Query 011355
Match_columns 488
No_of_seqs 413 out of 1934
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 00:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02871 UDP-sulfoquinovose:DA 100.0 3.4E-44 7.4E-49 357.9 41.4 367 74-473 56-438 (465)
2 PRK10307 putative glycosyl tra 100.0 9.8E-44 2.1E-48 350.6 38.6 371 77-472 1-410 (412)
3 cd03796 GT1_PIG-A_like This fa 100.0 2E-43 4.3E-48 346.4 38.8 354 78-473 1-371 (398)
4 PRK15427 colanic acid biosynth 100.0 4.4E-43 9.4E-48 342.3 37.3 350 77-469 1-405 (406)
5 TIGR03088 stp2 sugar transfera 100.0 4.9E-43 1.1E-47 341.8 36.5 361 77-470 2-373 (374)
6 PRK00654 glgA glycogen synthas 100.0 7.8E-43 1.7E-47 347.3 36.4 380 77-472 1-465 (466)
7 TIGR03449 mycothiol_MshA UDP-N 100.0 2.4E-42 5.1E-47 340.6 38.7 357 92-472 19-404 (405)
8 TIGR02472 sucr_P_syn_N sucrose 100.0 1.9E-42 4.1E-47 342.5 36.2 365 90-467 23-438 (439)
9 PLN02939 transferase, transfer 100.0 3.5E-41 7.5E-46 340.6 41.0 389 70-473 475-970 (977)
10 PRK15484 lipopolysaccharide 1, 100.0 2.5E-41 5.3E-46 328.2 36.9 344 78-471 4-379 (380)
11 PRK14099 glycogen synthase; Pr 100.0 2.9E-41 6.4E-46 334.4 37.5 385 74-473 1-482 (485)
12 PLN02316 synthase/transferase 100.0 3.6E-41 7.8E-46 347.0 39.4 361 74-471 585-1035(1036)
13 TIGR02149 glgA_Coryne glycogen 100.0 1.8E-41 3.9E-46 332.7 35.5 361 77-471 1-388 (388)
14 TIGR02095 glgA glycogen/starch 100.0 9.1E-42 2E-46 341.4 33.5 380 77-470 1-473 (473)
15 cd03818 GT1_ExpC_like This fam 100.0 4.5E-41 9.9E-46 329.7 35.6 359 78-464 1-395 (396)
16 cd04962 GT1_like_5 This family 100.0 1.8E-40 3.9E-45 323.8 35.6 351 77-470 1-371 (371)
17 cd03805 GT1_ALG2_like This fam 100.0 6.7E-40 1.5E-44 322.1 38.0 363 77-463 1-392 (392)
18 PRK15179 Vi polysaccharide bio 100.0 1.2E-39 2.5E-44 329.6 38.9 366 70-468 274-692 (694)
19 PRK14098 glycogen synthase; Pr 100.0 8E-40 1.7E-44 324.5 35.6 381 76-472 5-488 (489)
20 TIGR02468 sucrsPsyn_pln sucros 100.0 1.6E-39 3.5E-44 333.7 38.8 389 71-474 164-675 (1050)
21 PRK10125 putative glycosyl tra 100.0 1.2E-39 2.6E-44 316.6 35.3 358 77-470 1-405 (405)
22 PRK15490 Vi polysaccharide bio 100.0 8.6E-39 1.9E-43 308.2 37.2 359 78-469 163-575 (578)
23 cd03825 GT1_wcfI_like This fam 100.0 1.1E-38 2.3E-43 310.6 36.7 344 77-470 1-365 (365)
24 TIGR02470 sucr_synth sucrose s 100.0 1.7E-38 3.6E-43 320.3 38.8 377 74-467 253-745 (784)
25 cd03792 GT1_Trehalose_phosphor 100.0 5E-39 1.1E-43 312.9 34.1 347 78-469 1-371 (372)
26 cd03819 GT1_WavL_like This fam 100.0 3.4E-39 7.3E-44 312.9 31.6 328 91-459 8-355 (355)
27 cd04951 GT1_WbdM_like This fam 100.0 2.3E-38 4.9E-43 307.6 37.4 345 78-468 1-359 (360)
28 cd03800 GT1_Sucrose_synthase T 100.0 1.5E-38 3.2E-43 313.3 36.2 352 91-464 19-397 (398)
29 cd04955 GT1_like_6 This family 100.0 4E-38 8.6E-43 306.3 38.2 349 78-468 1-363 (363)
30 cd05844 GT1_like_7 Glycosyltra 100.0 8.5E-39 1.8E-43 311.5 33.1 346 78-465 1-366 (367)
31 TIGR03087 stp1 sugar transfera 100.0 1.7E-38 3.6E-43 311.5 34.9 362 79-468 1-395 (397)
32 cd03814 GT1_like_2 This family 100.0 3.3E-38 7.2E-43 306.6 35.6 356 78-468 1-364 (364)
33 cd03795 GT1_like_4 This family 100.0 3.6E-38 7.7E-43 305.9 34.6 341 78-460 1-357 (357)
34 cd03802 GT1_AviGT4_like This f 100.0 4.1E-38 9E-43 302.7 34.6 324 77-468 1-335 (335)
35 cd03791 GT1_Glycogen_synthase_ 100.0 3.9E-38 8.4E-43 316.7 33.9 378 78-468 1-475 (476)
36 cd03801 GT1_YqgM_like This fam 100.0 2.2E-37 4.7E-42 300.8 37.4 361 78-468 1-374 (374)
37 cd03807 GT1_WbnK_like This fam 100.0 7.1E-38 1.5E-42 304.0 33.7 351 78-468 1-365 (365)
38 cd03821 GT1_Bme6_like This fam 100.0 7.7E-38 1.7E-42 304.9 34.0 355 78-464 1-374 (375)
39 cd03816 GT1_ALG1_like This fam 100.0 2.4E-37 5.1E-42 303.6 36.6 358 75-462 2-409 (415)
40 cd03809 GT1_mtfB_like This fam 100.0 5E-38 1.1E-42 305.6 31.6 355 78-464 1-364 (365)
41 cd03817 GT1_UGDG_like This fam 100.0 3.3E-37 7.1E-42 300.5 37.4 360 78-469 1-373 (374)
42 PLN02949 transferase, transfer 100.0 1E-36 2.2E-41 298.8 40.3 375 75-473 32-460 (463)
43 cd03799 GT1_amsK_like This is 100.0 1.3E-37 2.8E-42 301.7 32.2 336 78-462 1-354 (355)
44 cd03823 GT1_ExpE7_like This fa 100.0 4.4E-37 9.6E-42 298.1 34.9 337 78-468 1-358 (359)
45 PRK09922 UDP-D-galactose:(gluc 100.0 1.1E-37 2.3E-42 301.6 30.3 337 77-472 1-358 (359)
46 PLN02846 digalactosyldiacylgly 100.0 4.9E-37 1.1E-41 295.8 34.4 349 75-469 3-391 (462)
47 KOG1111 N-acetylglucosaminyltr 100.0 1E-38 2.2E-43 282.2 20.1 354 77-474 1-371 (426)
48 cd03813 GT1_like_3 This family 100.0 1.4E-37 3E-42 310.5 30.8 281 163-468 172-475 (475)
49 cd03822 GT1_ecORF704_like This 100.0 2.1E-36 4.6E-41 294.3 36.8 339 78-468 1-366 (366)
50 cd03794 GT1_wbuB_like This fam 100.0 3E-36 6.5E-41 295.4 35.1 361 78-463 1-393 (394)
51 cd03806 GT1_ALG11_like This fa 100.0 8E-36 1.7E-40 292.4 37.5 360 78-461 2-418 (419)
52 cd03812 GT1_CapH_like This fam 100.0 5E-37 1.1E-41 298.0 28.6 335 78-452 1-348 (358)
53 PLN00142 sucrose synthase 100.0 1.1E-36 2.4E-41 307.0 30.8 378 74-467 277-768 (815)
54 cd03798 GT1_wlbH_like This fam 100.0 8.6E-36 1.9E-40 290.2 36.0 355 79-470 1-377 (377)
55 cd03820 GT1_amsD_like This fam 100.0 1.6E-35 3.6E-40 285.3 35.6 335 78-464 1-347 (348)
56 cd03808 GT1_cap1E_like This fa 100.0 2.8E-35 6E-40 285.0 36.6 343 78-464 1-358 (359)
57 cd03811 GT1_WabH_like This fam 100.0 1.6E-34 3.5E-39 278.8 33.1 335 78-455 1-352 (353)
58 cd03804 GT1_wbaZ_like This fam 100.0 1.9E-34 4.2E-39 278.8 31.3 340 78-463 1-350 (351)
59 cd04946 GT1_AmsK_like This fam 100.0 2E-33 4.3E-38 275.2 34.7 215 231-464 180-406 (407)
60 PHA01630 putative group 1 glyc 100.0 6.7E-33 1.5E-37 261.2 32.5 217 232-469 92-330 (331)
61 PLN02275 transferase, transfer 100.0 1.6E-32 3.4E-37 265.9 31.7 311 92-432 14-371 (371)
62 TIGR02918 accessory Sec system 100.0 1.9E-32 4.2E-37 271.2 32.4 216 230-470 266-500 (500)
63 PRK05749 3-deoxy-D-manno-octul 100.0 2.4E-32 5.3E-37 270.2 33.1 387 12-472 3-422 (425)
64 PLN02501 digalactosyldiacylgly 100.0 7E-32 1.5E-36 262.9 32.9 347 77-467 323-707 (794)
65 PHA01633 putative glycosyl tra 100.0 4.3E-32 9.3E-37 252.0 29.9 311 77-465 1-335 (335)
66 cd04949 GT1_gtfA_like This fam 100.0 4.9E-30 1.1E-34 250.1 24.9 211 231-463 154-372 (372)
67 PRK00726 murG undecaprenyldiph 100.0 6.9E-28 1.5E-32 233.2 30.2 328 77-468 2-356 (357)
68 COG0297 GlgA Glycogen synthase 100.0 3.6E-26 7.9E-31 220.6 32.8 385 77-474 1-482 (487)
69 COG1519 KdtA 3-deoxy-D-manno-o 100.0 2.1E-27 4.6E-32 218.4 22.4 383 11-468 1-416 (419)
70 PRK13609 diacylglycerol glucos 100.0 8.4E-27 1.8E-31 227.5 27.6 337 75-470 3-372 (380)
71 cd03788 GT1_TPS Trehalose-6-Ph 100.0 3.7E-27 7.9E-32 233.0 24.1 277 164-466 131-458 (460)
72 TIGR02400 trehalose_OtsA alpha 100.0 2E-26 4.3E-31 225.5 28.2 275 164-467 127-454 (456)
73 cd03785 GT1_MurG MurG is an N- 100.0 3.8E-26 8.3E-31 220.8 29.1 318 78-461 1-349 (350)
74 cd04950 GT1_like_1 Glycosyltra 99.9 5.1E-25 1.1E-29 213.7 31.9 217 230-469 149-371 (373)
75 cd03793 GT1_Glycogen_synthase_ 99.9 9.2E-26 2E-30 218.3 26.2 302 164-472 148-589 (590)
76 PRK13608 diacylglycerol glucos 99.9 1.2E-25 2.6E-30 218.9 26.9 342 75-474 4-376 (391)
77 TIGR01133 murG undecaprenyldip 99.9 2.7E-25 5.8E-30 214.7 28.1 318 77-461 1-346 (348)
78 PLN02605 monogalactosyldiacylg 99.9 3.7E-25 8.1E-30 215.2 28.1 221 230-467 146-379 (382)
79 KOG0853 Glycosyltransferase [C 99.9 1.2E-24 2.6E-29 206.3 28.2 390 70-483 28-481 (495)
80 PF00534 Glycos_transf_1: Glyc 99.9 1.8E-25 3.9E-30 192.9 17.5 162 280-449 3-172 (172)
81 KOG1387 Glycosyltransferase [C 99.9 3.1E-22 6.7E-27 176.7 31.7 370 78-473 45-462 (465)
82 PLN03063 alpha,alpha-trehalose 99.9 1.6E-23 3.4E-28 217.6 26.1 282 164-473 147-481 (797)
83 PRK09814 beta-1,6-galactofuran 99.9 2.3E-22 5.1E-27 191.6 29.3 282 91-452 13-315 (333)
84 PRK14501 putative bifunctional 99.9 1.4E-22 2.9E-27 211.5 23.9 280 164-473 133-466 (726)
85 TIGR00236 wecB UDP-N-acetylglu 99.9 5.4E-22 1.2E-26 192.4 26.1 343 77-465 1-363 (365)
86 cd01635 Glycosyltransferase_GT 99.9 9.5E-22 2.1E-26 177.8 23.8 114 298-417 109-229 (229)
87 PRK00025 lpxB lipid-A-disaccha 99.9 2E-22 4.4E-27 196.9 19.8 338 76-472 1-376 (380)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1.2E-21 2.7E-26 190.3 21.3 318 78-443 1-345 (363)
89 TIGR02398 gluc_glyc_Psyn gluco 99.9 1.6E-20 3.4E-25 182.6 26.6 276 164-468 132-481 (487)
90 COG0438 RfaG Glycosyltransfera 99.9 1E-18 2.2E-23 168.7 34.3 221 234-472 150-379 (381)
91 KOG2941 Beta-1,4-mannosyltrans 99.8 1.6E-17 3.5E-22 147.3 31.1 362 75-463 11-435 (444)
92 PLN03064 alpha,alpha-trehalose 99.8 1.9E-17 4.2E-22 171.2 28.0 281 164-472 231-564 (934)
93 PF13692 Glyco_trans_1_4: Glyc 99.8 3.9E-19 8.5E-24 146.6 11.5 131 294-434 3-135 (135)
94 TIGR03713 acc_sec_asp1 accesso 99.8 1.1E-16 2.4E-21 158.8 21.3 210 230-467 268-519 (519)
95 TIGR00215 lpxB lipid-A-disacch 99.7 2.7E-15 5.9E-20 145.4 25.2 318 78-450 7-366 (385)
96 COG0707 MurG UDP-N-acetylgluco 99.7 2.1E-13 4.6E-18 128.6 28.6 323 77-464 1-352 (357)
97 PF13439 Glyco_transf_4: Glyco 99.6 5.5E-15 1.2E-19 127.8 14.6 173 79-272 1-176 (177)
98 PRK12446 undecaprenyldiphospho 99.6 3.8E-13 8.2E-18 128.6 28.2 303 77-440 1-330 (352)
99 TIGR02094 more_P_ylases alpha- 99.6 1E-13 2.2E-18 139.5 24.7 233 230-467 258-598 (601)
100 PRK10117 trehalose-6-phosphate 99.6 8.4E-13 1.8E-17 127.5 24.1 280 164-472 123-456 (474)
101 PF00982 Glyco_transf_20: Glyc 99.6 2E-12 4.2E-17 126.7 26.5 278 164-468 141-473 (474)
102 TIGR02919 accessory Sec system 99.5 6.7E-13 1.5E-17 128.8 19.5 185 233-450 238-426 (438)
103 PF05693 Glycogen_syn: Glycoge 99.5 8.3E-13 1.8E-17 128.0 18.8 244 225-472 212-584 (633)
104 PF13524 Glyco_trans_1_2: Glyc 99.5 1.2E-13 2.5E-18 105.1 9.5 91 370-464 1-91 (92)
105 PLN02205 alpha,alpha-trehalose 99.5 1.2E-11 2.6E-16 129.3 25.9 279 166-471 203-553 (854)
106 COG0380 OtsA Trehalose-6-phosp 99.5 3.4E-11 7.4E-16 115.8 26.3 278 164-469 147-479 (486)
107 TIGR03568 NeuC_NnaA UDP-N-acet 99.5 2.1E-10 4.6E-15 110.4 30.3 334 77-465 1-363 (365)
108 PF13528 Glyco_trans_1_3: Glyc 99.4 4.6E-11 9.9E-16 113.8 23.0 292 77-431 1-317 (318)
109 PF13579 Glyco_trans_4_4: Glyc 99.4 1.1E-12 2.4E-17 111.2 10.5 151 93-266 1-160 (160)
110 TIGR03492 conserved hypothetic 99.4 2.4E-10 5.1E-15 111.1 26.4 336 91-464 5-393 (396)
111 COG0381 WecB UDP-N-acetylgluco 99.4 7.7E-10 1.7E-14 102.3 27.3 348 75-468 2-373 (383)
112 COG3914 Spy Predicted O-linked 99.4 1.6E-10 3.5E-15 110.5 22.8 335 73-472 256-616 (620)
113 cd03784 GT1_Gtf_like This fami 99.4 1.9E-10 4.1E-15 113.3 23.7 152 290-463 237-398 (401)
114 cd04299 GT1_Glycogen_Phosphory 99.3 6.7E-10 1.5E-14 114.2 25.4 172 294-469 479-690 (778)
115 TIGR01426 MGT glycosyltransfer 99.3 3.1E-09 6.7E-14 104.3 27.2 161 291-467 224-390 (392)
116 PF02350 Epimerase_2: UDP-N-ac 99.2 1.1E-09 2.3E-14 104.3 18.1 212 234-467 122-345 (346)
117 TIGR03590 PseG pseudaminic aci 99.2 2.8E-09 6E-14 98.7 20.0 253 78-401 1-269 (279)
118 PF04007 DUF354: Protein of un 99.2 5.6E-09 1.2E-13 97.6 21.5 295 77-434 1-310 (335)
119 COG0763 LpxB Lipid A disacchar 99.2 2.1E-09 4.6E-14 99.2 18.3 193 233-446 135-355 (381)
120 PF13844 Glyco_transf_41: Glyc 99.2 1.4E-09 3.1E-14 104.8 17.2 180 280-470 273-467 (468)
121 COG4641 Uncharacterized protei 99.1 1.7E-08 3.7E-13 92.7 21.4 332 91-472 12-364 (373)
122 TIGR00661 MJ1255 conserved hyp 99.1 7.6E-08 1.7E-12 91.5 24.1 119 294-434 190-314 (321)
123 PF09314 DUF1972: Domain of un 99.0 1.3E-08 2.8E-13 86.0 14.9 168 78-268 3-185 (185)
124 PF04464 Glyphos_transf: CDP-G 99.0 5.9E-08 1.3E-12 94.3 21.5 307 75-440 12-341 (369)
125 PF02684 LpxB: Lipid-A-disacch 99.0 3.7E-08 7.9E-13 93.5 18.7 186 234-440 133-345 (373)
126 COG1819 Glycosyl transferases, 99.0 2.5E-08 5.5E-13 96.9 17.5 162 288-468 233-400 (406)
127 PHA03392 egt ecdysteroid UDP-g 99.0 8.7E-07 1.9E-11 88.8 27.5 136 293-448 297-445 (507)
128 PRK10017 colanic acid biosynth 98.9 8.7E-06 1.9E-10 79.4 30.4 323 77-441 1-398 (426)
129 PRK01021 lpxB lipid-A-disaccha 98.9 5.1E-07 1.1E-11 89.5 21.5 314 77-449 227-585 (608)
130 PF13477 Glyco_trans_4_2: Glyc 98.7 4.7E-07 1E-11 74.6 13.8 132 78-242 1-139 (139)
131 COG1817 Uncharacterized protei 98.7 8.8E-06 1.9E-10 72.8 22.0 292 77-434 1-314 (346)
132 PLN02448 UDP-glycosyltransfera 98.7 0.00012 2.6E-09 72.9 31.6 202 231-448 205-429 (459)
133 COG4671 Predicted glycosyl tra 98.6 7.1E-06 1.5E-10 74.7 19.9 316 75-434 8-365 (400)
134 COG3980 spsG Spore coat polysa 98.6 2.9E-06 6.3E-11 74.7 14.8 286 77-444 1-302 (318)
135 PLN03007 UDP-glucosyltransfera 98.4 0.0028 6.2E-08 63.6 34.8 141 282-434 275-440 (482)
136 PRK02797 4-alpha-L-fucosyltran 98.4 0.00011 2.5E-09 66.5 20.7 208 231-472 95-319 (322)
137 PRK14089 ipid-A-disaccharide s 98.3 3.1E-06 6.8E-11 80.0 10.5 128 235-398 128-260 (347)
138 KOG3742 Glycogen synthase [Car 98.3 6.4E-06 1.4E-10 76.7 11.4 235 224-465 242-608 (692)
139 PLN02208 glycosyltransferase f 98.3 0.0045 9.9E-08 61.1 33.3 204 231-448 190-415 (442)
140 PLN02210 UDP-glucosyl transfer 98.3 0.0053 1.1E-07 61.0 33.4 139 284-434 261-415 (456)
141 PLN00414 glycosyltransferase f 98.2 0.0072 1.6E-07 59.8 32.2 209 230-450 188-418 (446)
142 PF07429 Glyco_transf_56: 4-al 98.2 0.0011 2.5E-08 61.0 23.0 206 232-470 135-356 (360)
143 PF04413 Glycos_transf_N: 3-De 98.2 3.5E-07 7.6E-12 78.6 -0.3 164 64-265 7-179 (186)
144 PF08323 Glyco_transf_5: Starc 98.1 7.5E-07 1.6E-11 80.7 1.3 43 78-120 1-43 (245)
145 PLN02410 UDP-glucoronosyl/UDP- 98.0 0.022 4.9E-07 56.4 33.4 191 232-434 201-410 (451)
146 PF04101 Glyco_tran_28_C: Glyc 98.0 6.4E-07 1.4E-11 76.4 -2.4 108 331-446 35-155 (167)
147 KOG4626 O-linked N-acetylgluco 98.0 0.00047 1E-08 67.5 16.4 181 282-472 749-943 (966)
148 PLN02562 UDP-glycosyltransfera 98.0 0.026 5.6E-07 56.1 32.3 131 293-439 274-417 (448)
149 TIGR02195 heptsyl_trn_II lipop 97.9 0.0018 3.8E-08 62.1 20.3 107 280-398 162-276 (334)
150 PRK10916 ADP-heptose:LPS hepto 97.7 0.0067 1.5E-07 58.4 20.0 105 282-398 170-286 (348)
151 PF12000 Glyco_trans_4_3: Gkyc 97.7 0.00038 8.3E-09 58.3 9.4 155 108-272 1-170 (171)
152 PLN02173 UDP-glucosyl transfer 97.6 0.091 2E-06 52.0 33.7 150 284-448 256-420 (449)
153 PLN02207 UDP-glycosyltransfera 97.6 0.038 8.1E-07 55.0 23.4 189 230-433 207-425 (468)
154 PF00201 UDPGT: UDP-glucoronos 97.5 0.00068 1.5E-08 68.9 10.7 142 281-438 265-412 (500)
155 PLN02764 glycosyltransferase f 97.5 0.029 6.4E-07 55.4 21.5 206 230-448 195-421 (453)
156 PF11440 AGT: DNA alpha-glucos 97.4 0.029 6.3E-07 49.8 18.2 296 93-434 1-353 (355)
157 PLN02863 UDP-glucoronosyl/UDP- 97.4 0.18 3.9E-06 50.5 33.3 78 348-434 343-433 (477)
158 COG3660 Predicted nucleoside-d 97.4 0.094 2E-06 46.4 23.3 257 77-403 1-276 (329)
159 PF11997 DUF3492: Domain of un 97.3 0.0066 1.4E-07 55.5 14.0 42 77-120 1-43 (268)
160 PRK10964 ADP-heptose:LPS hepto 97.3 0.11 2.4E-06 49.4 22.9 94 294-399 180-279 (322)
161 PLN02554 UDP-glycosyltransfera 97.3 0.062 1.4E-06 54.0 21.9 191 230-433 206-439 (481)
162 PLN02670 transferase, transfer 97.3 0.014 2.9E-07 58.1 16.7 228 230-471 209-467 (472)
163 PLN02167 UDP-glycosyltransfera 97.3 0.078 1.7E-06 53.2 22.2 188 230-434 211-434 (475)
164 COG2327 WcaK Polysaccharide py 97.3 0.18 3.9E-06 48.0 27.1 311 77-440 1-356 (385)
165 PRK10422 lipopolysaccharide co 97.3 0.047 1E-06 52.7 20.0 95 293-399 184-288 (352)
166 COG0859 RfaF ADP-heptose:LPS h 97.3 0.043 9.4E-07 52.4 19.4 96 292-399 175-277 (334)
167 KOG1050 Trehalose-6-phosphate 97.2 0.013 2.7E-07 60.8 15.6 198 259-465 240-470 (732)
168 TIGR03609 S_layer_CsaB polysac 97.2 0.21 4.5E-06 47.0 23.4 147 230-400 123-277 (298)
169 PLN02555 limonoid glucosyltran 97.2 0.16 3.5E-06 50.7 22.9 203 230-449 209-442 (480)
170 PLN00164 glucosyltransferase; 97.2 0.32 6.9E-06 48.9 34.5 95 348-449 339-446 (480)
171 cd03789 GT1_LPS_heptosyltransf 97.1 0.055 1.2E-06 50.3 18.3 96 294-401 123-226 (279)
172 TIGR02193 heptsyl_trn_I lipopo 97.0 0.19 4.1E-06 47.8 21.0 96 291-398 178-279 (319)
173 PF04230 PS_pyruv_trans: Polys 97.0 0.11 2.5E-06 47.8 19.3 152 230-400 123-284 (286)
174 PLN03004 UDP-glycosyltransfera 97.0 0.15 3.2E-06 50.6 20.5 190 230-434 204-424 (451)
175 PF06258 Mito_fiss_Elm1: Mitoc 96.9 0.22 4.7E-06 46.8 20.0 149 232-402 95-259 (311)
176 PLN02152 indole-3-acetate beta 96.8 0.081 1.7E-06 52.5 16.5 141 281-434 250-417 (455)
177 TIGR02201 heptsyl_trn_III lipo 96.8 0.34 7.3E-06 46.6 20.7 94 293-398 182-285 (344)
178 PF15024 Glyco_transf_18: Glyc 96.7 0.021 4.5E-07 56.5 11.7 152 294-469 279-455 (559)
179 COG0058 GlgP Glucan phosphoryl 96.7 0.031 6.8E-07 57.5 13.2 130 290-421 485-632 (750)
180 PLN02992 coniferyl-alcohol glu 96.5 0.67 1.4E-05 46.4 20.8 81 348-434 338-427 (481)
181 PRK14986 glycogen phosphorylas 95.9 0.055 1.2E-06 56.4 10.4 138 288-427 539-703 (815)
182 COG1887 TagB Putative glycosyl 95.6 0.68 1.5E-05 45.0 16.0 189 230-434 144-353 (388)
183 PLN03015 UDP-glucosyl transfer 95.6 2.9 6.3E-05 41.8 21.2 78 350-433 337-425 (470)
184 PLN02534 UDP-glycosyltransfera 95.5 3 6.5E-05 42.0 20.5 190 233-433 214-443 (491)
185 cd04300 GT1_Glycogen_Phosphory 95.4 0.12 2.7E-06 53.9 10.4 138 288-427 526-690 (797)
186 PF12038 DUF3524: Domain of un 95.4 0.15 3.1E-06 42.1 8.7 128 77-251 1-136 (168)
187 PF00343 Phosphorylase: Carboh 95.2 0.83 1.8E-05 47.3 15.5 192 233-426 330-603 (713)
188 PRK14985 maltodextrin phosphor 94.9 0.082 1.8E-06 55.0 7.6 138 288-427 525-689 (798)
189 KOG1192 UDP-glucuronosyl and U 94.9 0.45 9.7E-06 48.4 13.0 133 294-440 279-427 (496)
190 PF05159 Capsule_synth: Capsul 94.7 0.63 1.4E-05 42.9 12.3 84 307-403 138-229 (269)
191 TIGR02093 P_ylase glycogen/sta 94.7 0.16 3.4E-06 53.0 8.8 138 288-427 523-687 (794)
192 PF01075 Glyco_transf_9: Glyco 94.3 0.41 8.8E-06 43.5 10.2 96 291-398 104-208 (247)
193 PF06925 MGDG_synth: Monogalac 93.8 0.46 1E-05 40.3 8.8 36 230-266 133-168 (169)
194 PF03016 Exostosin: Exostosin 92.8 0.62 1.3E-05 43.7 8.8 71 358-429 227-300 (302)
195 TIGR00715 precor6x_red precorr 91.5 11 0.00023 34.4 22.7 118 294-432 131-255 (256)
196 PF10093 DUF2331: Uncharacteri 90.9 2 4.3E-05 41.0 9.6 104 279-400 168-290 (374)
197 PF10933 DUF2827: Protein of u 90.3 17 0.00036 34.5 21.8 309 91-456 16-350 (364)
198 COG4394 Uncharacterized protei 90.2 7.3 0.00016 35.3 11.8 105 280-401 165-285 (370)
199 PF00862 Sucrose_synth: Sucros 89.9 5.9 0.00013 39.2 12.0 161 77-247 273-481 (550)
200 KOG3349 Predicted glycosyltran 88.8 5.2 0.00011 32.5 8.9 94 294-403 5-111 (170)
201 PF08660 Alg14: Oligosaccharid 88.6 1.9 4.2E-05 36.4 7.0 34 91-124 6-41 (170)
202 PF03033 Glyco_transf_28: Glyc 86.0 1.3 2.8E-05 35.9 4.5 36 79-120 1-36 (139)
203 TIGR03837 efp_adjacent_2 conse 84.1 10 0.00022 36.0 9.7 104 280-400 168-288 (371)
204 COG1703 ArgK Putative periplas 83.8 19 0.00041 33.2 11.0 92 75-174 50-153 (323)
205 COG2120 Uncharacterized protei 82.8 13 0.00029 33.4 9.9 44 74-123 8-51 (237)
206 COG5017 Uncharacterized conser 82.8 12 0.00026 29.9 8.0 92 295-402 2-95 (161)
207 PF10087 DUF2325: Uncharacteri 82.2 2.5 5.5E-05 31.9 4.3 62 343-404 19-87 (97)
208 COG2910 Putative NADH-flavin r 82.0 2.5 5.5E-05 35.7 4.4 37 77-123 1-37 (211)
209 PF02951 GSH-S_N: Prokaryotic 82.0 2.4 5.3E-05 33.3 4.2 41 77-120 1-41 (119)
210 PF01975 SurE: Survival protei 81.0 2.5 5.3E-05 36.7 4.3 42 77-125 1-42 (196)
211 PF14386 DUF4417: Domain of un 78.2 6.7 0.00014 34.1 6.1 78 242-338 99-178 (200)
212 COG2894 MinD Septum formation 77.5 24 0.00053 31.0 9.0 38 78-121 3-42 (272)
213 PRK06849 hypothetical protein; 77.4 5.7 0.00012 38.9 6.2 83 75-173 3-85 (389)
214 PF03358 FMN_red: NADPH-depend 77.1 7.6 0.00016 32.0 6.0 41 77-120 1-41 (152)
215 PRK00207 sulfur transfer compl 76.9 6.2 0.00013 31.6 5.2 79 77-172 1-80 (128)
216 PF02571 CbiJ: Precorrin-6x re 75.8 62 0.0013 29.3 19.1 71 350-429 175-248 (249)
217 COG4635 HemG Flavodoxin [Energ 75.2 26 0.00057 28.9 8.1 39 77-120 1-39 (175)
218 PF01113 DapB_N: Dihydrodipico 75.0 2.4 5.2E-05 33.7 2.3 45 359-404 59-103 (124)
219 KOG0780 Signal recognition par 74.9 67 0.0015 31.0 11.8 157 298-468 159-341 (483)
220 PF02441 Flavoprotein: Flavopr 74.8 5.2 0.00011 32.0 4.3 37 77-120 1-37 (129)
221 PRK01372 ddl D-alanine--D-alan 73.8 8 0.00017 36.3 6.0 45 73-119 1-45 (304)
222 PLN02166 dTDP-glucose 4,6-dehy 73.4 17 0.00038 36.1 8.4 36 74-119 118-153 (436)
223 PF12996 DUF3880: DUF based on 73.4 8.6 0.00019 27.7 4.7 64 230-303 14-77 (79)
224 KOG1021 Acetylglucosaminyltran 73.1 23 0.0005 35.5 9.3 96 358-456 334-432 (464)
225 KOG2884 26S proteasome regulat 72.2 45 0.00097 29.0 9.1 117 294-434 109-229 (259)
226 PF00389 2-Hacid_dh: D-isomer 71.8 38 0.00082 27.1 8.7 83 341-428 13-101 (133)
227 PRK09271 flavodoxin; Provision 71.0 11 0.00023 31.5 5.5 38 77-119 1-38 (160)
228 PF00551 Formyl_trans_N: Formy 70.7 9 0.00019 32.8 5.0 27 77-112 1-27 (181)
229 TIGR03029 EpsG chain length de 70.0 47 0.001 30.5 10.1 40 76-119 102-141 (274)
230 PF02585 PIG-L: GlcNAc-PI de-N 69.2 46 0.001 26.3 8.7 26 96-121 11-36 (128)
231 COG0496 SurE Predicted acid ph 68.3 44 0.00096 30.1 8.9 40 77-124 1-40 (252)
232 COG0300 DltE Short-chain dehyd 68.2 11 0.00025 34.3 5.3 38 75-121 4-41 (265)
233 smart00672 CAP10 Putative lipo 68.0 45 0.00098 30.4 9.2 92 379-471 155-250 (256)
234 PF03308 ArgK: ArgK protein; 67.9 29 0.00063 31.4 7.6 92 75-174 28-131 (266)
235 COG1692 Calcineurin-like phosp 67.7 39 0.00085 30.1 8.1 81 295-380 2-94 (266)
236 PF00885 DMRL_synthase: 6,7-di 67.4 29 0.00063 28.4 7.0 66 74-171 1-69 (144)
237 COG1519 KdtA 3-deoxy-D-manno-o 67.1 71 0.0015 31.2 10.5 99 292-399 49-153 (419)
238 PRK05647 purN phosphoribosylgl 66.4 32 0.00069 30.0 7.6 34 77-119 2-37 (200)
239 PRK00346 surE 5'(3')-nucleotid 66.2 54 0.0012 29.7 9.2 40 77-124 1-40 (250)
240 TIGR00460 fmt methionyl-tRNA f 65.7 36 0.00078 32.1 8.4 33 77-120 1-33 (313)
241 PTZ00408 NAD-dependent deacety 65.7 69 0.0015 28.9 9.8 58 346-403 149-210 (242)
242 TIGR03609 S_layer_CsaB polysac 65.5 90 0.0019 29.1 11.2 96 295-401 3-108 (298)
243 PLN00016 RNA-binding protein; 65.4 8.5 0.00018 37.5 4.3 41 75-121 51-91 (378)
244 PF09198 T4-Gluco-transf: Bact 65.3 24 0.00051 20.2 5.1 38 77-114 1-38 (38)
245 TIGR00639 PurN phosphoribosylg 64.9 54 0.0012 28.3 8.6 35 77-120 1-37 (190)
246 PRK06249 2-dehydropantoate 2-r 64.7 12 0.00027 35.3 5.1 37 73-120 2-38 (313)
247 TIGR01007 eps_fam capsular exo 64.1 20 0.00043 31.3 6.1 42 75-120 15-56 (204)
248 PRK14138 NAD-dependent deacety 63.7 63 0.0014 29.2 9.2 82 346-431 153-240 (244)
249 PF05686 Glyco_transf_90: Glyc 63.3 22 0.00047 34.9 6.6 89 381-470 226-318 (395)
250 PRK06988 putative formyltransf 63.2 46 0.001 31.4 8.6 34 76-120 2-35 (312)
251 COG4370 Uncharacterized protei 63.0 21 0.00046 32.9 5.8 196 233-452 177-396 (412)
252 PRK09739 hypothetical protein; 62.6 22 0.00048 30.9 6.0 42 75-120 2-44 (199)
253 PF06564 YhjQ: YhjQ protein; 62.3 16 0.00036 32.8 5.1 40 77-120 1-40 (243)
254 PRK13011 formyltetrahydrofolat 62.1 38 0.00083 31.4 7.7 104 73-192 86-195 (286)
255 KOG0780 Signal recognition par 62.0 26 0.00057 33.6 6.4 39 77-120 101-139 (483)
256 PRK14569 D-alanyl-alanine synt 61.7 18 0.00039 33.8 5.6 42 75-118 2-43 (296)
257 cd01020 TroA_b Metal binding p 61.3 1.3E+02 0.0029 27.5 11.2 104 360-469 45-150 (264)
258 COG1087 GalE UDP-glucose 4-epi 60.6 30 0.00065 32.0 6.4 30 94-123 8-37 (329)
259 PLN02206 UDP-glucuronate decar 60.5 56 0.0012 32.6 9.1 34 75-118 118-151 (442)
260 PRK06756 flavodoxin; Provision 60.1 19 0.00042 29.5 4.9 38 77-119 2-39 (148)
261 COG0223 Fmt Methionyl-tRNA for 60.0 34 0.00074 32.0 6.8 39 76-125 1-39 (307)
262 PRK13932 stationary phase surv 60.0 17 0.00036 33.0 4.8 42 75-124 4-45 (257)
263 TIGR02690 resist_ArsH arsenica 59.6 39 0.00085 29.9 6.9 46 70-119 20-66 (219)
264 COG4088 Predicted nucleotide k 59.0 12 0.00025 32.5 3.4 38 77-119 1-38 (261)
265 PRK13931 stationary phase surv 58.7 98 0.0021 28.3 9.5 41 77-124 1-44 (261)
266 PF00289 CPSase_L_chain: Carba 58.5 30 0.00064 26.8 5.3 68 99-171 14-81 (110)
267 COG1763 MobB Molybdopterin-gua 58.3 73 0.0016 26.6 7.9 42 76-122 1-42 (161)
268 COG0373 HemA Glutamyl-tRNA red 58.2 1.9E+02 0.0042 28.4 12.7 97 328-433 202-306 (414)
269 PRK05562 precorrin-2 dehydroge 57.7 1.4E+02 0.003 26.6 12.7 118 328-453 48-180 (223)
270 PRK00005 fmt methionyl-tRNA fo 57.3 60 0.0013 30.6 8.3 33 77-120 1-33 (309)
271 TIGR01470 cysG_Nterm siroheme 57.1 1.3E+02 0.0029 26.2 12.8 132 312-454 22-166 (205)
272 TIGR01754 flav_RNR ribonucleot 56.2 22 0.00047 28.9 4.5 34 77-115 1-34 (140)
273 PRK05723 flavodoxin; Provision 56.0 21 0.00045 29.5 4.4 36 77-117 1-36 (151)
274 TIGR00064 ftsY signal recognit 55.6 80 0.0017 29.1 8.6 41 75-120 70-110 (272)
275 COG1154 Dxs Deoxyxylulose-5-ph 55.6 61 0.0013 33.1 8.1 83 349-434 534-624 (627)
276 PRK13869 plasmid-partitioning 55.4 38 0.00083 33.3 6.9 44 72-121 116-161 (405)
277 cd02037 MRP-like MRP (Multiple 55.3 95 0.0021 25.9 8.6 32 91-122 9-40 (169)
278 PRK08305 spoVFB dipicolinate s 55.2 30 0.00066 29.9 5.3 37 76-120 5-43 (196)
279 PRK06027 purU formyltetrahydro 55.1 38 0.00083 31.4 6.4 104 73-192 86-195 (286)
280 PLN02778 3,5-epimerase/4-reduc 54.9 21 0.00046 33.4 4.8 35 71-115 4-38 (298)
281 COG1553 DsrE Uncharacterized c 54.8 1E+02 0.0023 24.3 8.8 78 77-171 1-79 (126)
282 TIGR03446 mycothiol_Mca mycoth 54.8 1.7E+02 0.0037 27.2 10.5 39 78-122 2-40 (283)
283 TIGR03012 sulf_tusD_dsrE sulfu 54.5 73 0.0016 25.4 7.1 78 78-172 1-79 (127)
284 PF02374 ArsA_ATPase: Anion-tr 53.1 30 0.00065 32.5 5.5 41 77-122 1-41 (305)
285 PF04321 RmlD_sub_bind: RmlD s 52.7 37 0.00079 31.6 6.0 33 77-119 1-33 (286)
286 PRK05920 aromatic acid decarbo 52.6 32 0.0007 30.0 5.2 38 76-120 3-40 (204)
287 PRK08267 short chain dehydroge 52.0 20 0.00044 32.5 4.2 35 77-120 1-35 (260)
288 CHL00072 chlL photochlorophyll 51.8 37 0.0008 31.7 5.8 40 77-122 1-40 (290)
289 PRK10360 DNA-binding transcrip 51.6 1.5E+02 0.0032 25.0 9.6 76 359-434 37-118 (196)
290 PRK06179 short chain dehydroge 51.4 1.1E+02 0.0024 27.7 9.1 34 78-120 5-38 (270)
291 PF02606 LpxK: Tetraacyldisacc 50.8 28 0.0006 33.1 4.9 35 91-125 44-80 (326)
292 PRK12342 hypothetical protein; 50.7 1.5E+02 0.0031 27.1 9.2 32 91-122 32-63 (254)
293 PRK06703 flavodoxin; Provision 49.8 34 0.00074 28.1 4.8 38 77-119 2-39 (151)
294 COG0716 FldA Flavodoxins [Ener 49.6 35 0.00075 28.1 4.8 39 77-120 2-40 (151)
295 PF10649 DUF2478: Protein of u 49.5 28 0.00061 28.9 4.1 40 361-400 86-131 (159)
296 PRK06398 aldose dehydrogenase; 49.3 1.5E+02 0.0032 26.8 9.5 34 78-120 7-40 (258)
297 PRK00676 hemA glutamyl-tRNA re 49.1 2.5E+02 0.0053 26.9 14.2 97 363-472 222-321 (338)
298 TIGR03453 partition_RepA plasm 49.1 50 0.0011 32.3 6.6 44 73-120 100-143 (387)
299 PRK09435 membrane ATPase/prote 48.7 2.1E+02 0.0046 27.2 10.4 43 75-123 55-97 (332)
300 PF04413 Glycos_transf_N: 3-De 48.5 60 0.0013 27.9 6.2 98 293-399 22-125 (186)
301 PF02514 CobN-Mg_chel: CobN/Ma 48.5 19 0.0004 40.3 3.8 43 72-114 245-293 (1098)
302 TIGR03018 pepcterm_TyrKin exop 48.4 63 0.0014 28.2 6.6 43 75-121 33-76 (207)
303 PRK10037 cell division protein 48.4 35 0.00076 30.9 5.1 38 77-120 1-40 (250)
304 PRK07308 flavodoxin; Validated 48.4 53 0.0011 26.8 5.7 29 91-119 11-39 (146)
305 COG4565 CitB Response regulato 48.4 1.4E+02 0.003 26.3 8.1 76 358-434 35-120 (224)
306 PRK11519 tyrosine kinase; Prov 48.1 1.7E+02 0.0038 31.4 10.9 42 76-121 525-566 (719)
307 PF00201 UDPGT: UDP-glucoronos 48.1 8.8 0.00019 39.0 1.2 28 93-120 10-37 (500)
308 PRK13849 putative crown gall t 48.0 54 0.0012 29.4 6.1 39 77-121 1-41 (231)
309 PRK11104 hemG protoporphyrinog 47.9 28 0.0006 29.7 4.0 37 77-119 1-37 (177)
310 PLN02285 methionyl-tRNA formyl 47.3 1.6E+02 0.0036 28.0 9.5 37 75-122 5-47 (334)
311 PRK14571 D-alanyl-alanine synt 47.3 46 0.00099 31.1 5.8 41 77-119 1-41 (299)
312 PRK04155 chaperone protein Hch 47.3 70 0.0015 29.7 6.8 46 75-120 48-100 (287)
313 PRK10017 colanic acid biosynth 47.2 2.5E+02 0.0054 27.9 11.1 43 296-342 3-47 (426)
314 PF13614 AAA_31: AAA domain; P 47.1 62 0.0014 26.5 6.1 31 91-121 10-40 (157)
315 TIGR01915 npdG NADPH-dependent 47.0 29 0.00064 30.7 4.3 32 77-119 1-33 (219)
316 KOG3332 N-acetylglucosaminyl p 47.0 2E+02 0.0044 25.3 10.9 87 78-171 39-143 (247)
317 PF02525 Flavodoxin_2: Flavodo 46.9 47 0.001 28.8 5.5 41 77-121 1-44 (199)
318 PRK13940 glutamyl-tRNA reducta 46.8 1.6E+02 0.0035 29.1 9.6 94 329-430 206-302 (414)
319 TIGR00750 lao LAO/AO transport 46.8 2.5E+02 0.0054 26.3 10.6 43 75-122 32-74 (300)
320 TIGR03371 cellulose_yhjQ cellu 46.1 47 0.001 29.8 5.6 40 77-120 1-40 (246)
321 PRK05693 short chain dehydroge 45.6 35 0.00076 31.3 4.7 35 77-120 1-35 (274)
322 PF02635 DrsE: DsrE/DsrF-like 45.6 63 0.0014 25.0 5.6 42 77-121 1-45 (122)
323 KOG2452 Formyltetrahydrofolate 45.5 59 0.0013 31.7 6.0 33 77-120 1-33 (881)
324 TIGR00087 surE 5'/3'-nucleotid 45.3 38 0.00082 30.6 4.6 40 77-124 1-40 (244)
325 COG1089 Gmd GDP-D-mannose dehy 45.3 1.4E+02 0.0031 27.5 8.1 35 77-120 2-36 (345)
326 PF12146 Hydrolase_4: Putative 45.2 79 0.0017 22.6 5.5 37 78-120 17-53 (79)
327 PF03853 YjeF_N: YjeF-related 45.0 73 0.0016 26.9 6.1 39 75-120 24-62 (169)
328 PTZ00409 Sir2 (Silent Informat 44.8 2.1E+02 0.0045 26.4 9.4 85 346-434 174-264 (271)
329 PF05014 Nuc_deoxyrib_tr: Nucl 44.7 32 0.00069 26.6 3.7 41 362-402 56-99 (113)
330 PRK08105 flavodoxin; Provision 44.7 1.8E+02 0.0038 23.9 8.8 38 78-120 3-40 (149)
331 PF12046 DUF3529: Protein of u 44.4 1.3E+02 0.0027 25.4 7.1 21 95-115 42-62 (173)
332 PRK10569 NAD(P)H-dependent FMN 44.1 60 0.0013 28.1 5.6 39 77-119 1-40 (191)
333 KOG2264 Exostosin EXT1L [Signa 44.1 2.3E+02 0.0049 28.8 9.7 114 350-468 401-523 (907)
334 PRK06924 short chain dehydroge 44.0 40 0.00086 30.3 4.8 35 77-120 1-35 (251)
335 KOG3339 Predicted glycosyltran 43.9 2.1E+02 0.0045 24.5 8.8 28 75-109 37-64 (211)
336 COG0803 LraI ABC-type metal io 43.6 1.4E+02 0.0031 28.0 8.4 109 358-471 73-190 (303)
337 PRK02122 glucosamine-6-phospha 43.6 47 0.001 34.9 5.6 43 74-122 367-409 (652)
338 PRK12815 carB carbamoyl phosph 43.1 1.2E+02 0.0027 34.2 9.1 45 75-122 554-601 (1068)
339 PF01297 TroA: Periplasmic sol 43.0 81 0.0018 28.6 6.6 107 358-469 39-147 (256)
340 PLN02735 carbamoyl-phosphate s 43.0 1.2E+02 0.0026 34.3 9.0 81 75-171 573-656 (1102)
341 CHL00175 minD septum-site dete 42.8 60 0.0013 29.9 5.8 40 77-120 15-54 (281)
342 cd02032 Bchl_like This family 42.7 61 0.0013 29.7 5.8 39 77-121 1-39 (267)
343 TIGR00853 pts-lac PTS system, 42.6 82 0.0018 23.6 5.4 40 75-120 2-41 (95)
344 PLN03050 pyridoxine (pyridoxam 42.5 52 0.0011 29.8 5.1 34 77-117 61-94 (246)
345 PRK14494 putative molybdopteri 42.4 59 0.0013 29.0 5.3 38 77-119 1-38 (229)
346 PRK05708 2-dehydropantoate 2-r 42.4 40 0.00086 31.7 4.6 34 76-120 2-35 (305)
347 TIGR01380 glut_syn glutathione 42.3 27 0.00059 32.9 3.4 41 77-120 1-41 (312)
348 PRK13789 phosphoribosylamine-- 42.3 72 0.0016 31.7 6.5 35 75-120 3-37 (426)
349 PRK13234 nifH nitrogenase redu 42.3 74 0.0016 29.7 6.3 43 75-122 2-44 (295)
350 COG0003 ArsA Predicted ATPase 42.1 53 0.0012 31.1 5.2 40 77-123 2-43 (322)
351 PRK01966 ddl D-alanyl-alanine 42.0 53 0.0012 31.3 5.4 45 74-120 1-45 (333)
352 PRK07856 short chain dehydroge 41.9 1.7E+02 0.0036 26.3 8.6 34 78-120 7-40 (252)
353 PRK01906 tetraacyldisaccharide 41.9 56 0.0012 31.2 5.4 33 91-123 65-99 (338)
354 TIGR03682 arCOG04112 arCOG0411 41.8 2.4E+02 0.0051 26.6 9.5 41 352-398 249-289 (308)
355 COG4221 Short-chain alcohol de 41.7 44 0.00095 29.9 4.3 35 78-121 7-41 (246)
356 cd01016 TroA Metal binding pro 41.6 1.7E+02 0.0036 27.0 8.5 106 361-469 44-156 (276)
357 COG2204 AtoC Response regulato 41.6 1.9E+02 0.0042 28.9 9.1 85 348-434 29-122 (464)
358 PLN02683 pyruvate dehydrogenas 41.5 2.2E+02 0.0049 27.4 9.5 111 294-434 231-352 (356)
359 PRK08177 short chain dehydroge 41.4 50 0.0011 29.1 4.9 35 77-120 1-35 (225)
360 PRK07023 short chain dehydroge 41.3 2.2E+02 0.0047 25.3 9.2 27 91-120 9-35 (243)
361 COG0569 TrkA K+ transport syst 41.2 39 0.00085 30.1 4.1 124 77-253 1-132 (225)
362 PRK08125 bifunctional UDP-gluc 41.2 1.2E+02 0.0025 32.3 8.3 32 77-119 1-33 (660)
363 PF13277 YmdB: YmdB-like prote 41.1 85 0.0019 28.3 6.0 81 297-382 1-93 (253)
364 PRK07313 phosphopantothenoylcy 41.1 58 0.0013 27.9 4.9 36 78-120 3-38 (182)
365 PF10727 Rossmann-like: Rossma 41.0 55 0.0012 26.1 4.4 35 75-120 9-43 (127)
366 cd01409 SIRT4 SIRT4: Eukaryoti 40.6 1.4E+02 0.0031 27.3 7.7 59 346-404 179-243 (260)
367 COG2804 PulE Type II secretory 40.6 1.8E+02 0.0039 29.3 8.7 91 90-195 266-364 (500)
368 PRK09620 hypothetical protein; 40.3 2.4E+02 0.0052 25.2 8.9 20 100-119 33-52 (229)
369 TIGR01425 SRP54_euk signal rec 40.2 1.6E+02 0.0034 29.3 8.3 30 91-120 109-138 (429)
370 CHL00194 ycf39 Ycf39; Provisio 40.2 43 0.00094 31.5 4.5 34 77-120 1-34 (317)
371 PTZ00182 3-methyl-2-oxobutanat 40.1 2.7E+02 0.0058 26.9 9.8 110 294-431 236-354 (355)
372 PRK05993 short chain dehydroge 40.1 52 0.0011 30.2 5.0 35 77-120 4-38 (277)
373 PRK05333 NAD-dependent deacety 40.0 2.7E+02 0.0059 25.8 9.6 81 346-432 189-277 (285)
374 PRK06101 short chain dehydroge 39.8 52 0.0011 29.4 4.8 34 77-119 1-34 (240)
375 COG1663 LpxK Tetraacyldisaccha 39.6 1.7E+02 0.0037 27.7 8.0 32 91-122 56-89 (336)
376 PRK07178 pyruvate carboxylase 39.6 1.8E+02 0.0038 29.4 9.0 34 78-122 4-37 (472)
377 PLN02695 GDP-D-mannose-3',5'-e 39.5 48 0.001 32.1 4.8 35 75-119 20-54 (370)
378 PF01820 Dala_Dala_lig_N: D-al 39.4 45 0.00098 26.1 3.8 44 77-122 1-44 (117)
379 PRK06718 precorrin-2 dehydroge 39.3 2.6E+02 0.0056 24.4 12.8 131 312-454 23-166 (202)
380 PRK08462 biotin carboxylase; V 39.2 1.6E+02 0.0035 29.3 8.6 24 99-122 16-39 (445)
381 PRK09004 FMN-binding protein M 39.0 70 0.0015 26.2 5.0 36 78-118 3-38 (146)
382 TIGR01281 DPOR_bchL light-inde 39.0 74 0.0016 29.1 5.8 39 77-121 1-39 (268)
383 PRK00061 ribH 6,7-dimethyl-8-r 38.9 2.2E+02 0.0047 23.6 7.7 65 75-171 11-78 (154)
384 TIGR00288 conserved hypothetic 38.7 1E+02 0.0023 25.7 5.8 65 306-375 89-156 (160)
385 PRK06732 phosphopantothenate-- 38.7 54 0.0012 29.3 4.6 26 91-119 24-49 (229)
386 PLN00141 Tic62-NAD(P)-related 38.5 59 0.0013 29.3 5.0 36 75-120 16-51 (251)
387 PRK07454 short chain dehydroge 38.5 59 0.0013 29.0 5.0 37 75-120 4-40 (241)
388 PRK14619 NAD(P)H-dependent gly 38.2 63 0.0014 30.4 5.2 35 75-120 3-37 (308)
389 PRK10867 signal recognition pa 38.1 1.5E+02 0.0033 29.4 7.9 39 78-121 101-140 (433)
390 PRK03767 NAD(P)H:quinone oxido 37.9 69 0.0015 27.8 5.1 38 77-119 2-40 (200)
391 PHA02519 plasmid partition pro 37.9 79 0.0017 30.9 5.9 40 75-120 104-146 (387)
392 PRK13010 purU formyltetrahydro 37.9 1.1E+02 0.0024 28.5 6.6 103 74-192 91-199 (289)
393 PRK12833 acetyl-CoA carboxylas 37.8 2.3E+02 0.005 28.5 9.4 23 98-120 16-38 (467)
394 cd03146 GAT1_Peptidase_E Type 37.8 1.5E+02 0.0032 26.1 7.2 90 307-402 16-124 (212)
395 COG0541 Ffh Signal recognition 37.8 1.1E+02 0.0025 30.0 6.7 41 76-122 100-140 (451)
396 PRK08591 acetyl-CoA carboxylas 37.7 1.8E+02 0.0038 29.1 8.7 23 99-121 14-36 (451)
397 PRK09841 cryptic autophosphory 37.7 2.9E+02 0.0063 29.7 10.6 41 76-120 530-570 (726)
398 PRK03359 putative electron tra 37.6 3.2E+02 0.007 24.9 9.6 33 91-123 33-67 (256)
399 COG0512 PabA Anthranilate/para 37.6 1.9E+02 0.0042 24.9 7.3 33 77-119 2-34 (191)
400 PF03721 UDPG_MGDP_dh_N: UDP-g 37.4 58 0.0013 27.9 4.5 33 77-120 1-33 (185)
401 PRK06196 oxidoreductase; Provi 37.4 69 0.0015 30.1 5.4 33 78-119 27-59 (315)
402 KOG1209 1-Acyl dihydroxyaceton 37.4 84 0.0018 27.6 5.1 37 76-121 7-43 (289)
403 COG0062 Uncharacterized conser 37.3 92 0.002 27.2 5.6 40 76-122 49-88 (203)
404 PF00852 Glyco_transf_10: Glyc 37.2 63 0.0014 31.1 5.1 80 358-441 218-304 (349)
405 PF07015 VirC1: VirC1 protein; 37.2 1E+02 0.0022 27.5 5.9 43 77-123 1-43 (231)
406 PRK06180 short chain dehydroge 37.1 62 0.0013 29.7 5.0 35 77-120 4-38 (277)
407 PF00070 Pyr_redox: Pyridine n 37.1 51 0.0011 23.5 3.5 23 98-120 10-32 (80)
408 PRK05568 flavodoxin; Provision 37.1 1.2E+02 0.0026 24.4 6.2 38 78-120 3-40 (142)
409 PRK05472 redox-sensing transcr 37.0 2.9E+02 0.0063 24.2 10.0 66 358-431 135-202 (213)
410 KOG0832 Mitochondrial/chloropl 36.9 3E+02 0.0066 24.4 12.6 70 346-433 162-234 (251)
411 KOG1159 NADP-dependent flavopr 36.9 1.9E+02 0.004 29.0 7.9 40 77-121 1-40 (574)
412 PRK05749 3-deoxy-D-manno-octul 36.7 3.9E+02 0.0085 26.3 10.9 97 294-399 52-154 (425)
413 TIGR00514 accC acetyl-CoA carb 36.5 1.9E+02 0.0041 28.9 8.6 23 98-120 13-35 (449)
414 COG3911 Predicted ATPase [Gene 36.4 67 0.0014 26.4 4.2 36 73-117 5-40 (183)
415 PRK06444 prephenate dehydrogen 36.0 62 0.0014 28.1 4.4 28 77-114 1-28 (197)
416 PLN02225 1-deoxy-D-xylulose-5- 36.0 1.9E+02 0.0042 30.6 8.6 80 351-433 602-691 (701)
417 cd01410 SIRT7 SIRT7: Eukaryoti 35.8 1.3E+02 0.0028 26.4 6.4 58 346-403 130-193 (206)
418 COG0062 Uncharacterized conser 35.8 3E+02 0.0064 24.1 8.4 96 294-403 51-162 (203)
419 COG1618 Predicted nucleotide k 35.7 86 0.0019 26.3 4.8 39 75-119 4-42 (179)
420 PRK12921 2-dehydropantoate 2-r 35.7 53 0.0011 30.7 4.3 31 77-118 1-31 (305)
421 PRK03094 hypothetical protein; 35.3 23 0.00049 25.5 1.3 24 95-118 6-29 (80)
422 PRK10416 signal recognition pa 35.3 2.7E+02 0.0058 26.4 8.8 30 91-120 123-152 (318)
423 KOG1838 Alpha/beta hydrolase [ 34.9 76 0.0017 30.9 5.1 38 79-120 127-164 (409)
424 PRK12419 riboflavin synthase s 34.9 2.7E+02 0.0058 23.2 7.8 65 75-171 9-76 (158)
425 PRK09273 hypothetical protein; 34.8 83 0.0018 27.5 4.8 39 77-119 1-39 (211)
426 PF11071 DUF2872: Protein of u 34.7 62 0.0013 25.7 3.6 69 361-432 66-140 (141)
427 PRK13933 stationary phase surv 34.6 68 0.0015 29.1 4.5 39 77-123 1-39 (253)
428 PLN03049 pyridoxine (pyridoxam 34.6 70 0.0015 32.1 5.1 36 78-120 61-96 (462)
429 PRK07074 short chain dehydroge 34.4 55 0.0012 29.5 4.1 26 91-119 10-35 (257)
430 COG1691 NCAIR mutase (PurE)-re 34.4 1.4E+02 0.003 26.4 6.0 27 306-336 156-182 (254)
431 TIGR00421 ubiX_pad polyprenyl 34.2 84 0.0018 26.9 4.9 25 96-120 12-36 (181)
432 PF01210 NAD_Gly3P_dh_N: NAD-d 34.2 59 0.0013 27.0 3.9 22 99-120 11-32 (157)
433 TIGR02113 coaC_strep phosphopa 34.2 88 0.0019 26.7 4.9 24 97-120 14-37 (177)
434 PRK06015 keto-hydroxyglutarate 34.2 1.6E+02 0.0034 25.8 6.5 75 311-396 42-121 (201)
435 PRK07236 hypothetical protein; 34.1 40 0.00086 32.9 3.3 36 74-120 4-39 (386)
436 PRK10675 UDP-galactose-4-epime 34.1 63 0.0014 30.6 4.7 32 77-118 1-32 (338)
437 PRK10538 malonic semialdehyde 34.1 74 0.0016 28.5 4.9 34 77-120 1-34 (248)
438 PRK14568 vanB D-alanine--D-lac 34.1 77 0.0017 30.4 5.2 44 75-120 2-45 (343)
439 PRK06395 phosphoribosylamine-- 34.0 1.7E+02 0.0036 29.2 7.6 32 76-118 2-33 (435)
440 TIGR02700 flavo_MJ0208 archaeo 33.9 73 0.0016 28.6 4.7 28 93-120 10-39 (234)
441 cd01080 NAD_bind_m-THF_DH_Cycl 33.7 2.9E+02 0.0063 23.3 9.4 92 327-427 43-140 (168)
442 PF02302 PTS_IIB: PTS system, 33.6 1.2E+02 0.0026 22.0 5.1 36 78-119 1-37 (90)
443 TIGR02025 BchH magnesium chela 33.5 50 0.0011 37.4 4.2 40 75-114 415-460 (1216)
444 PF11238 DUF3039: Protein of u 33.5 35 0.00075 22.6 1.8 16 383-398 15-30 (58)
445 COG3580 Uncharacterized protei 33.4 4.1E+02 0.0089 24.9 12.1 93 294-398 22-119 (351)
446 PRK06753 hypothetical protein; 33.3 39 0.00084 32.7 3.1 33 77-120 1-33 (373)
447 PRK13768 GTPase; Provisional 33.3 1.1E+02 0.0025 27.7 5.9 40 77-121 2-41 (253)
448 PRK09548 PTS system ascorbate- 33.2 2.7E+02 0.0058 28.9 8.8 42 74-120 504-545 (602)
449 TIGR03815 CpaE_hom_Actino heli 33.2 1.4E+02 0.003 28.3 6.8 45 73-121 89-133 (322)
450 PRK13934 stationary phase surv 33.2 73 0.0016 29.1 4.5 39 77-123 1-39 (266)
451 cd02040 NifH NifH gene encodes 33.2 1E+02 0.0023 28.0 5.8 31 92-122 11-41 (270)
452 COG0655 WrbA Multimeric flavod 33.1 1.1E+02 0.0024 26.7 5.7 42 77-121 1-42 (207)
453 COG0429 Predicted hydrolase of 33.0 1.3E+02 0.0027 28.5 6.0 41 78-123 77-117 (345)
454 PRK12493 magnesium chelatase s 32.9 51 0.0011 37.7 4.2 40 74-113 429-474 (1310)
455 PRK10446 ribosomal protein S6 32.8 61 0.0013 30.3 4.2 36 77-120 1-36 (300)
456 PRK05282 (alpha)-aspartyl dipe 32.8 2.6E+02 0.0055 25.1 7.8 55 346-402 60-123 (233)
457 PRK06171 sorbitol-6-phosphate 32.7 3.7E+02 0.008 24.2 9.6 34 78-120 10-43 (266)
458 TIGR02257 cobalto_cobN cobalto 32.7 51 0.0011 36.9 4.1 43 72-114 366-414 (1122)
459 PLN03069 magnesiumprotoporphyr 32.6 53 0.0011 37.3 4.2 41 74-114 441-487 (1220)
460 PRK06522 2-dehydropantoate 2-r 32.5 68 0.0015 29.9 4.5 32 77-119 1-32 (304)
461 PF01531 Glyco_transf_11: Glyc 32.5 2.2E+02 0.0047 26.6 7.8 63 307-374 189-254 (298)
462 PRK00170 azoreductase; Reviewe 32.5 1E+02 0.0022 26.6 5.4 40 77-120 2-45 (201)
463 cd01408 SIRT1 SIRT1: Eukaryoti 32.4 2.7E+02 0.006 24.9 8.1 77 346-425 150-232 (235)
464 PRK06953 short chain dehydroge 32.2 79 0.0017 27.7 4.7 34 77-119 1-34 (222)
465 PRK13054 lipid kinase; Reviewe 32.2 1.2E+02 0.0025 28.4 6.0 40 75-120 2-41 (300)
466 COG0482 TrmU Predicted tRNA(5- 32.1 91 0.002 29.8 5.1 38 75-122 2-39 (356)
467 PF01656 CbiA: CobQ/CobB/MinD/ 32.1 1.4E+02 0.003 25.4 6.1 31 91-121 8-38 (195)
468 PRK09730 putative NAD(P)-bindi 32.0 81 0.0017 28.1 4.8 33 77-118 1-33 (247)
469 PRK12481 2-deoxy-D-gluconate 3 32.0 60 0.0013 29.3 3.9 32 78-118 9-40 (251)
470 COG3640 CooC CO dehydrogenase 32.0 1.4E+02 0.0031 26.7 5.9 39 77-121 1-40 (255)
471 COG2085 Predicted dinucleotide 31.9 62 0.0014 28.3 3.7 34 77-121 2-35 (211)
472 cd00363 PFK Phosphofructokinas 31.9 3.1E+02 0.0067 26.2 8.7 41 77-121 1-41 (338)
473 PRK13886 conjugal transfer pro 31.8 1.5E+02 0.0032 26.8 6.1 41 77-121 2-42 (241)
474 TIGR01205 D_ala_D_alaTIGR D-al 31.8 81 0.0018 29.6 4.9 41 78-120 1-41 (315)
475 PRK11780 isoprenoid biosynthes 31.8 1.2E+02 0.0027 26.8 5.6 40 78-120 3-43 (217)
476 COG0205 PfkA 6-phosphofructoki 31.8 4.3E+02 0.0093 25.4 9.5 44 76-123 2-45 (347)
477 cd02033 BchX Chlorophyllide re 31.7 1.5E+02 0.0033 28.2 6.5 43 74-121 28-70 (329)
478 PRK13761 hypothetical protein; 31.7 3.7E+02 0.008 23.9 8.4 91 367-469 150-241 (248)
479 PRK13405 bchH magnesium chelat 31.5 64 0.0014 36.5 4.6 42 73-114 435-482 (1209)
480 TIGR01755 flav_wrbA NAD(P)H:qu 31.5 1E+02 0.0023 26.7 5.1 38 77-119 1-39 (197)
481 PF00258 Flavodoxin_1: Flavodo 31.4 1.3E+02 0.0028 24.2 5.5 31 91-121 6-36 (143)
482 PLN02896 cinnamyl-alcohol dehy 31.3 1E+02 0.0022 29.6 5.5 37 73-119 7-43 (353)
483 PRK07102 short chain dehydroge 31.1 81 0.0018 28.1 4.6 27 91-120 9-35 (243)
484 TIGR00655 PurU formyltetrahydr 31.0 2.4E+02 0.0052 26.1 7.6 102 75-192 83-190 (280)
485 PRK09288 purT phosphoribosylgl 31.0 1.1E+02 0.0023 30.0 5.7 37 74-121 10-46 (395)
486 COG0647 NagD Predicted sugar p 30.8 3.6E+02 0.0079 24.8 8.6 92 327-434 90-183 (269)
487 PRK06029 3-octaprenyl-4-hydrox 30.8 92 0.002 26.7 4.5 37 77-120 2-39 (185)
488 PRK05246 glutathione synthetas 30.8 54 0.0012 31.0 3.5 42 77-121 2-43 (316)
489 PRK05717 oxidoreductase; Valid 30.8 1E+02 0.0022 27.8 5.2 36 75-119 8-43 (255)
490 PRK03202 6-phosphofructokinase 30.8 3.2E+02 0.0069 25.9 8.5 42 77-122 2-43 (320)
491 cd01018 ZntC Metal binding pro 30.7 2.4E+02 0.0053 25.8 7.7 55 412-469 111-167 (266)
492 PRK05884 short chain dehydroge 30.6 95 0.0021 27.4 4.9 33 77-119 1-33 (223)
493 PF00448 SRP54: SRP54-type pro 30.4 1.4E+02 0.003 25.9 5.7 30 91-120 10-39 (196)
494 PLN02657 3,8-divinyl protochlo 30.4 1E+02 0.0022 30.2 5.4 37 74-120 58-94 (390)
495 PRK09590 celB cellobiose phosp 30.4 1.3E+02 0.0028 23.0 4.8 37 78-120 3-39 (104)
496 PHA02518 ParA-like protein; Pr 30.4 1.4E+02 0.0031 25.8 6.0 29 92-120 11-39 (211)
497 CHL00144 odpB pyruvate dehydro 29.9 4.9E+02 0.011 24.7 10.0 113 294-434 204-325 (327)
498 PRK08340 glucose-1-dehydrogena 29.9 91 0.002 28.2 4.8 33 77-119 1-33 (259)
499 PRK13935 stationary phase surv 29.7 93 0.002 28.2 4.6 40 77-124 1-40 (253)
500 PRK05569 flavodoxin; Provision 29.6 1.6E+02 0.0034 23.7 5.7 37 78-119 3-39 (141)
No 1
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=3.4e-44 Score=357.86 Aligned_cols=367 Identities=22% Similarity=0.270 Sum_probs=270.9
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCC-CCccC-cchhHHH
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSK-PTAAG-YLDQSIV 151 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~-~~~~~~~ 151 (488)
.++|||++++..+|+ ...||++.++.+++++|.++||+|++++........ ..+...+...... +.... ...+...
T Consensus 56 ~~~mrI~~~~~~~~~-~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 56 SRPRRIALFVEPSPF-SYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQE-FHGAKVIGSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred CCCceEEEEECCcCC-cccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCcc-ccCceeeccCCcCCccCCCceeeccCC
Confidence 688999999864444 368999999999999999999999999987543211 1111111111100 00000 0111111
Q ss_pred HHHHHHHhcCCCCCcEEEeCCcchHH------hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHH
Q 011355 152 WQQLQTQNSTGKPFDVIHTESVGLRH------TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKV 225 (488)
Q Consensus 152 ~~~~~~~~~~~~~~Dvv~~~~~~~~~------~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (488)
. .+.+..++. +||+||+|+..... ....++| ++.+.|+........ ... ..+.+.+...
T Consensus 134 ~-~l~~~i~~~-kpDiIh~~~~~~~~~~~~~~ak~~~ip-~V~~~h~~~~~~~~~--------~~~----~~~~~~~~~~ 198 (465)
T PLN02871 134 P-RIISEVARF-KPDLIHASSPGIMVFGALFYAKLLCVP-LVMSYHTHVPVYIPR--------YTF----SWLVKPMWDI 198 (465)
T ss_pred H-HHHHHHHhC-CCCEEEECCCchhHHHHHHHHHHhCCC-EEEEEecCchhhhhc--------ccc----hhhHHHHHHH
Confidence 1 222222223 89999999753211 1234567 899999753321100 000 1111111111
Q ss_pred HHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCC-CCCCcEEEEEEeeecc
Q 011355 226 VEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGI-PENRSLVLGMAGRLVK 304 (488)
Q Consensus 226 ~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i-~~~~~~~i~~~Grl~~ 304 (488)
. ..+++.+|.++++|+...+.+.+.+..+.+++.++|||+|.+.|.+... ....++++.. ++++ ++|+|+||+.+
T Consensus 199 ~--r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~-~~~~~~~~~~~~~~~-~~i~~vGrl~~ 274 (465)
T PLN02871 199 I--RFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFR-SEEMRARLSGGEPEK-PLIVYVGRLGA 274 (465)
T ss_pred H--HHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccc-cHHHHHHhcCCCCCC-eEEEEeCCCch
Confidence 1 1346789999999999999998854455789999999999988865433 2345655543 2344 78899999999
Q ss_pred ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh--CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCC
Q 011355 305 DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL--GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLD 382 (488)
Q Consensus 305 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~ 382 (488)
.||++.++++++.+ ++++|+|+|+|+..+.++++ ..+|+|+|+++.+++..+|+.||++|+||. .|++|
T Consensus 275 ~K~~~~li~a~~~~--------~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~-~E~~g 345 (465)
T PLN02871 275 EKNLDFLKRVMERL--------PGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSE-SETLG 345 (465)
T ss_pred hhhHHHHHHHHHhC--------CCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCc-ccccC
Confidence 99999999988765 78999999999988887765 368999999999999999999999999997 59999
Q ss_pred hHHHHHHHcCCcEEEeCCCCcccceeec---CCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHH
Q 011355 383 HTVLEAMLSGKPLMATRLASIVGSVIVG---TDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATK 458 (488)
Q Consensus 383 ~~~lEAma~G~PVI~~~~~~~~~e~v~~---~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~ 458 (488)
++++|||+||+|||+++.+|+. |++.+ +++|+++++ |+++++++|.+++++ ++.+++|++++++.++ +|||+.
T Consensus 346 ~~vlEAmA~G~PVI~s~~gg~~-eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~-~fsw~~ 422 (465)
T PLN02871 346 FVVLEAMASGVPVVAARAGGIP-DIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD-PELRERMGAAAREEVE-KWDWRA 422 (465)
T ss_pred cHHHHHHHcCCCEEEcCCCCcH-hhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH-hCCHHH
Confidence 9999999999999999999998 88888 999999998 999999999999998 9999999999999985 599999
Q ss_pred HHHHHHH-HHHHhhcc
Q 011355 459 MAAAYER-LFLCISND 473 (488)
Q Consensus 459 ~~~~~~~-~~~~~~~~ 473 (488)
+++++.+ .|++++..
T Consensus 423 ~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 423 ATRKLRNEQYSAAIWF 438 (465)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999997 69887764
No 2
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=9.8e-44 Score=350.62 Aligned_cols=371 Identities=16% Similarity=0.181 Sum_probs=272.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCC-----------CCCCCceEEEecCCCCc-cC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSF-----------PTYPISSLYFHLSKPTA-AG 144 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~-~~ 144 (488)
|||++++..|+| ..||++.++.+++++|.++||+|+|+|..+..+.. ......++.+....... ..
T Consensus 1 mkIlii~~~~~P--~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~ 78 (412)
T PRK10307 1 MKILVYGINYAP--ELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQ 78 (412)
T ss_pred CeEEEEecCCCC--CccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCC
Confidence 899999988877 57899999999999999999999999976421110 00112233333221100 00
Q ss_pred cchhHH-------HHHHHHHHhcC-CCCCcEEEeCCcch----H-Hh--hhccCCcEEEeeeCCcchhhhhhhhHhhhcC
Q 011355 145 YLDQSI-------VWQQLQTQNST-GKPFDVIHTESVGL----R-HT--RARNLTNVVVSWHGIAYETIHSDIIQELLRT 209 (488)
Q Consensus 145 ~~~~~~-------~~~~~~~~~~~-~~~~Dvv~~~~~~~----~-~~--~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~ 209 (488)
.....+ .+..+...... ..+||+||+|+... . .+ ...+.| ++..+|+.+........ ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~-~v~~~~d~~~~~~~~~~-----~~ 152 (412)
T PRK10307 79 PSGLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGAR-TWLHIQDYEVDAAFGLG-----LL 152 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCC-EEEEeccCCHHHHHHhC-----Cc
Confidence 001111 11111111111 12899999986431 1 12 223456 88888886543221100 00
Q ss_pred CCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcc-cchhhhhhhCC
Q 011355 210 PEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVA-MGKDFKKKFGI 288 (488)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~-~~~~~r~~~~i 288 (488)
.. .....+...+ +...++++|.++++|+...+.+.+ ++++..++.+||||+|.+.+.+... ....+++++++
T Consensus 153 ~~-~~~~~~~~~~-----~~~~~~~ad~ii~~S~~~~~~~~~-~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~ 225 (412)
T PRK10307 153 KG-GKVARLATAF-----ERSLLRRFDNVSTISRSMMNKARE-KGVAAEKVIFFPNWSEVARFQPVADADVDALRAQLGL 225 (412)
T ss_pred cC-cHHHHHHHHH-----HHHHHhhCCEEEecCHHHHHHHHH-cCCCcccEEEECCCcCHhhcCCCCccchHHHHHHcCC
Confidence 11 1111222222 224578999999999999999987 6888889999999999887765432 23467888998
Q ss_pred CCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh----C-CcEEEeCccCHHHHHH
Q 011355 289 PENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL----G-TNVIVLGPLDQTRLAM 363 (488)
Q Consensus 289 ~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l----~-~~V~~~g~v~~~~l~~ 363 (488)
++++ ++++|+|++.+.||++.+++|++.+. +. ++++|+|+|+|+..+.++++ + ++|.|+|+++.+++.+
T Consensus 226 ~~~~-~~i~~~G~l~~~kg~~~li~a~~~l~-~~----~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 226 PDGK-KIVLYSGNIGEKQGLELVIDAARRLR-DR----PDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred CCCC-EEEEEcCccccccCHHHHHHHHHHhc-cC----CCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHH
Confidence 8776 88999999999999999999999874 45 78999999999887766542 1 4799999999999999
Q ss_pred HHHhcCEEEeCCCCCCC----CChHHHHHHHcCCcEEEeCCCCcc-cceeecCCceeEeCC-CHHHHHHHHHHHHhcCHH
Q 011355 364 FYNAIDIFVNPTLRAQG----LDHTVLEAMLSGKPLMATRLASIV-GSVIVGTDMGYLFSP-QVESVKKALYGIWADGRE 437 (488)
Q Consensus 364 ~~~~adv~v~ps~~~eg----~~~~~lEAma~G~PVI~~~~~~~~-~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~ 437 (488)
+|++||++++||.. |+ +|.+++|||+||+|||+++.+|.. .+++. ++|+++++ |+++++++|.+++++ ++
T Consensus 300 ~~~~aDi~v~ps~~-e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~-~~ 375 (412)
T PRK10307 300 LLKMADCHLLPQKA-GAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQ-AL 375 (412)
T ss_pred HHHhcCEeEEeecc-CcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhC-HH
Confidence 99999999999974 77 688899999999999999987631 25555 68999998 999999999999998 89
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 438 VLEKKGLVARKRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 438 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
.+++|+++++++++++|||+.++++|.++|++++.
T Consensus 376 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 376 LRPKLGTVAREYAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999876
No 3
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2e-43 Score=346.44 Aligned_cols=354 Identities=20% Similarity=0.242 Sum_probs=264.2
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC---CCCceEEEecCCCC-ccCcchhHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT---YPISSLYFHLSKPT-AAGYLDQSIVWQ 153 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---~~~~~i~~~~~~~~-~~~~~~~~~~~~ 153 (488)
||++++..|+| ..||.++++..++++|.++||+|+|++...+...... .+.+...++..... ..........+.
T Consensus 1 kI~~v~~~~~p--~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~ 78 (398)
T cd03796 1 RICMVSDFFYP--NLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFP 78 (398)
T ss_pred CeeEEeecccc--ccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHH
Confidence 79999988876 6899999999999999999999999997643322111 12222222211110 001112222333
Q ss_pred HHHHHhcCCCCCcEEEeCCcch-------HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHH
Q 011355 154 QLQTQNSTGKPFDVIHTESVGL-------RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVV 226 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~~~~~-------~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
.+....... +||+||+|+... ......++| ++.+.|+..... +. .........+
T Consensus 79 ~l~~~~~~~-~~DiIh~~~~~~~~~~~~~~~~~~~~~~-~v~t~h~~~~~~---~~------------~~~~~~~~~~-- 139 (398)
T cd03796 79 LLRNILIRE-RITIVHGHQAFSALAHEALLHARTMGLK-TVFTDHSLFGFA---DA------------SSIHTNKLLR-- 139 (398)
T ss_pred HHHHHHHhc-CCCEEEECCCCchHHHHHHHHhhhcCCc-EEEEeccccccc---ch------------hhHHhhHHHH--
Confidence 343343333 899999997421 112223457 889999853210 00 0111111111
Q ss_pred HHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecccc
Q 011355 227 EEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDK 306 (488)
Q Consensus 227 ~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~K 306 (488)
..++++|.++++|+...+.+....+++.+++.+||||+|.+.|.+.... .++++ ++++++||+.+.|
T Consensus 140 ---~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~---------~~~~~-~~i~~~grl~~~K 206 (398)
T cd03796 140 ---FSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK---------RDNDK-ITIVVISRLVYRK 206 (398)
T ss_pred ---HhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc---------CCCCc-eEEEEEeccchhc
Confidence 3468899999999999987655567788899999999998877654321 12344 8999999999999
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQG 380 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg 380 (488)
|++.+++|+..+.++. ++++|+|+|+|+..+.+++ +.++|.|+|+++.+++..+|+.||++++||. .|+
T Consensus 207 g~~~li~a~~~l~~~~----~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~-~E~ 281 (398)
T cd03796 207 GIDLLVGIIPEICKKH----PNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSL-TEA 281 (398)
T ss_pred CHHHHHHHHHHHHhhC----CCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCCh-hhc
Confidence 9999999999998888 8999999999987665554 3478999999999999999999999999997 599
Q ss_pred CChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHH
Q 011355 381 LDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMA 460 (488)
Q Consensus 381 ~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~ 460 (488)
||++++|||+||+|||+++.++.+ |++.++. ++++++|.++++++|.+++++ ......+++++++.+.++|||++++
T Consensus 282 ~g~~~~EAma~G~PVI~s~~gg~~-e~i~~~~-~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~fs~~~~~ 358 (398)
T cd03796 282 FCIAIVEAASCGLLVVSTRVGGIP-EVLPPDM-ILLAEPDVESIVRKLEEAISI-LRTGKHDPWSFHNRVKKMYSWEDVA 358 (398)
T ss_pred cCHHHHHHHHcCCCEEECCCCCch-hheeCCc-eeecCCCHHHHHHHHHHHHhC-hhhhhhHHHHHHHHHHhhCCHHHHH
Confidence 999999999999999999999998 8877654 455545999999999999998 6666678899999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 011355 461 AAYERLFLCISND 473 (488)
Q Consensus 461 ~~~~~~~~~~~~~ 473 (488)
+++.++|++++++
T Consensus 359 ~~~~~~y~~l~~~ 371 (398)
T cd03796 359 KRTEKVYDRILQT 371 (398)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998874
No 4
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=4.4e-43 Score=342.26 Aligned_cols=350 Identities=20% Similarity=0.260 Sum_probs=261.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCC-----C-CceEEEecCCCC---------
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTY-----P-ISSLYFHLSKPT--------- 141 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-----~-~~~i~~~~~~~~--------- 141 (488)
|||+++...||.. .|+++.+-+.+|.++||+|++++........... . ...+.+......
T Consensus 1 m~ia~~~~~~P~~-----setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (406)
T PRK15427 1 MKVGFFLLKFPLS-----SETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHR 75 (406)
T ss_pred CeEEEEeccCCcc-----chhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhh
Confidence 8999999998753 3899999999999999999999987654322111 1 011111100000
Q ss_pred -------c--------cCcchhHHHHHHH-----HHHhcCCCCCcEEEeCCcchH---Hhhhc----cCCcEEEeeeCCc
Q 011355 142 -------A--------AGYLDQSIVWQQL-----QTQNSTGKPFDVIHTESVGLR---HTRAR----NLTNVVVSWHGIA 194 (488)
Q Consensus 142 -------~--------~~~~~~~~~~~~~-----~~~~~~~~~~Dvv~~~~~~~~---~~~~~----~~p~~v~~~h~~~ 194 (488)
. ............+ .....+..+||+||+|..... ..++. ..+ .+.+.|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~-~~~t~Hg~d 154 (406)
T PRK15427 76 ASQTLRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELGVLRGK-IATIFHGID 154 (406)
T ss_pred hhhHhhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCCCCCC-eEEEEcccc
Confidence 0 0000000000000 011112228999999964321 11211 224 788999853
Q ss_pred chhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCC
Q 011355 195 YETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKP 274 (488)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~ 274 (488)
... .... .. +.. ... ..++++|.++++|+..++.+.+ +|++.+++.++|||+|.+.|.+
T Consensus 155 ~~~--~~~~------------~~-~~~---~~~--~~~~~ad~vv~~S~~~~~~l~~-~g~~~~ki~vi~nGvd~~~f~~ 213 (406)
T PRK15427 155 ISS--REVL------------NH-YTP---EYQ--QLFRRGDLMLPISDLWAGRLQK-MGCPPEKIAVSRMGVDMTRFSP 213 (406)
T ss_pred ccc--chhh------------hh-hhH---HHH--HHHHhCCEEEECCHHHHHHHHH-cCCCHHHEEEcCCCCCHHHcCC
Confidence 211 0000 00 000 111 3467899999999999999987 6888899999999999988765
Q ss_pred CcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCC
Q 011355 275 DVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGT 348 (488)
Q Consensus 275 ~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~ 348 (488)
.... ..++++.++++||+.+.||++.+++|++.+.+++ ++++++|+|+|+..+.+++ +.+
T Consensus 214 ~~~~----------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~----~~~~l~ivG~G~~~~~l~~~~~~~~l~~ 279 (406)
T PRK15427 214 RPVK----------APATPLEIISVARLTEKKGLHVAIEACRQLKEQG----VAFRYRILGIGPWERRLRTLIEQYQLED 279 (406)
T ss_pred Cccc----------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhC----CCEEEEEEECchhHHHHHHHHHHcCCCC
Confidence 3221 1223378999999999999999999999998888 8999999999998776654 347
Q ss_pred cEEEeCccCHHHHHHHHHhcCEEEeCCCC-----CCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHH
Q 011355 349 NVIVLGPLDQTRLAMFYNAIDIFVNPTLR-----AQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVE 422 (488)
Q Consensus 349 ~V~~~g~v~~~~l~~~~~~adv~v~ps~~-----~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~ 422 (488)
+|.|+|+++++++.++|+.||++|+||.. .||+|++++|||+||+|||+|+.+|++ |++.++.+|+++++ |++
T Consensus 280 ~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~-E~v~~~~~G~lv~~~d~~ 358 (406)
T PRK15427 280 VVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIP-ELVEADKSGWLVPENDAQ 358 (406)
T ss_pred eEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCch-hhhcCCCceEEeCCCCHH
Confidence 89999999999999999999999999963 299999999999999999999999998 99999999999999 999
Q ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 423 SVKKALYGIWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 423 ~la~~i~~ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
+++++|.++++ | ++.+++|++++++.+.++|+|+.+++++.++|++
T Consensus 359 ~la~ai~~l~~~d-~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 359 ALAQRLAAFSQLD-TDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999 7 8999999999999999999999999999999976
No 5
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.9e-43 Score=341.81 Aligned_cols=361 Identities=23% Similarity=0.297 Sum_probs=262.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
.||+++...+ ..||+++++.+++++|.+.||++.+++....+.........++.+...... .... ...+..+.
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQ--PGKD-VAVYPQLY 74 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCC--CCCC-hHHHHHHH
Confidence 4899998844 679999999999999999999999998654332111111112222221111 1111 11222333
Q ss_pred HHhcCCCCCcEEEeCCcchH--Hhh--hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhc
Q 011355 157 TQNSTGKPFDVIHTESVGLR--HTR--ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFF 232 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~~--~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (488)
+..+.. +||+||+|+.... .+. ..+.|..+++.|+......+. . ...+..+.+. ..
T Consensus 75 ~~l~~~-~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-----------~---~~~~~~~~~~-----~~ 134 (374)
T TIGR03088 75 RLLRQL-RPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDG-----------S---NWKYRWLRRL-----YR 134 (374)
T ss_pred HHHHHh-CCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcccccchh-----------h---HHHHHHHHHH-----HH
Confidence 333333 8999999974321 111 123342344555432111000 0 1111122221 23
Q ss_pred CCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHH
Q 011355 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMF 312 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll 312 (488)
+.+|.++++|+...+.+.+.++++..++.+|+||+|.+.+.+........+++...++++ ++++++||+.+.||++.++
T Consensus 135 ~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~vGrl~~~Kg~~~li 213 (374)
T TIGR03088 135 PLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADES-VVVGTVGRLQAVKDQPTLV 213 (374)
T ss_pred hcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCC-eEEEEEecCCcccCHHHHH
Confidence 467899999999999999878888899999999999988765543333333343344444 8999999999999999999
Q ss_pred HHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHH
Q 011355 313 EALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVL 386 (488)
Q Consensus 313 ~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~l 386 (488)
+|+..+.++.++..++++|+++|+|+..+.+++ +.++|.|.|. .+|+.++|+.||++|+||. .||||++++
T Consensus 214 ~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~pS~-~Eg~~~~~l 290 (374)
T TIGR03088 214 RAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGE--RDDVPALMQALDLFVLPSL-AEGISNTIL 290 (374)
T ss_pred HHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCC--cCCHHHHHHhcCEEEeccc-cccCchHHH
Confidence 999999877621113799999999987666554 3467999997 5699999999999999997 599999999
Q ss_pred HHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHH
Q 011355 387 EAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYER 465 (488)
Q Consensus 387 EAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 465 (488)
|||+||+|||+++.++.. |++.++.+|+++++ |+++++++|.+++++ ++.+..+++++++++.++|||+.++++|.+
T Consensus 291 EAma~G~Pvv~s~~~g~~-e~i~~~~~g~~~~~~d~~~la~~i~~l~~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 368 (374)
T TIGR03088 291 EAMASGLPVIATAVGGNP-ELVQHGVTGALVPPGDAVALARALQPYVSD-PAARRAHGAAGRARAEQQFSINAMVAAYAG 368 (374)
T ss_pred HHHHcCCCEEEcCCCCcH-HHhcCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999998 89999999999998 999999999999998 899999999999999999999999999999
Q ss_pred HHHHh
Q 011355 466 LFLCI 470 (488)
Q Consensus 466 ~~~~~ 470 (488)
+|+++
T Consensus 369 ~y~~~ 373 (374)
T TIGR03088 369 LYDQL 373 (374)
T ss_pred HHHHh
Confidence 99876
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=7.8e-43 Score=347.29 Aligned_cols=380 Identities=20% Similarity=0.289 Sum_probs=263.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------------------CCCceEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT------------------YPISSLYFHLS 138 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~------------------~~~~~i~~~~~ 138 (488)
|||++++..+.|....||.+.++..|+++|+++||+|.|+++......... ....++.+...
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 899999998766667999999999999999999999999998754321110 01122222211
Q ss_pred -------CCCccCcchhHH---HH-HHHHHHh-cCCCCCcEEEeCCcc---hHHhhh-------ccCCcEEEeeeCCcch
Q 011355 139 -------KPTAAGYLDQSI---VW-QQLQTQN-STGKPFDVIHTESVG---LRHTRA-------RNLTNVVVSWHGIAYE 196 (488)
Q Consensus 139 -------~~~~~~~~~~~~---~~-~~~~~~~-~~~~~~Dvv~~~~~~---~~~~~~-------~~~p~~v~~~h~~~~~ 196 (488)
++...+..+... .+ ....... ....+|||||+|++. ++.+++ .++| ++.++|+..+.
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~-~v~TiH~~~~~ 159 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIK-TVFTIHNLAYQ 159 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCC-EEEEcCCCcCC
Confidence 111111111100 01 1111111 112289999999732 222222 1457 99999997653
Q ss_pred hhhh-hhhHhhhcCCCChhH-HHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHH---------hcCCCCcEEEecC
Q 011355 197 TIHS-DIIQELLRTPEEPQA-YALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRI---------YMIPEERVHVILN 265 (488)
Q Consensus 197 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~---------~g~~~~~i~vi~n 265 (488)
.... +.... ...+...+. ..+. ...........+..+|.++++|+..++.+... ++.+.+++.+|+|
T Consensus 160 g~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~N 237 (466)
T PRK00654 160 GLFPAEILGE-LGLPAEAFHLEGLE-FYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILN 237 (466)
T ss_pred CcCCHHHHHH-cCCChHHcCchhhh-cCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecC
Confidence 2111 01110 000000000 0000 00000001134578999999999999888642 2345679999999
Q ss_pred CccCCCcCCCcc-----------------cchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCC
Q 011355 266 GVDEEVFKPDVA-----------------MGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRS 328 (488)
Q Consensus 266 gvd~~~~~~~~~-----------------~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~ 328 (488)
|+|.+.+.+... .+..+++++|+++++.++++++||+.++||++.+++|++++.+ .+
T Consensus 238 Gid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~------~~ 311 (466)
T PRK00654 238 GIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE------QG 311 (466)
T ss_pred CCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh------cC
Confidence 999998876432 1356889999986444889999999999999999999999875 46
Q ss_pred eEEEEEeCCCc--hhHHhh----hCCcEEE-eCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCC
Q 011355 329 TVFLVAGDGPW--GARYRD----LGTNVIV-LGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLA 401 (488)
Q Consensus 329 ~~l~ivG~g~~--~~~~~~----l~~~V~~-~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~ 401 (488)
++|+|+|+|+. .+.+++ +..++.+ .|+ +.+.+..+|+.||++|+||.+ |+||++++|||+||+|+|+++.|
T Consensus 312 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~-E~~gl~~lEAma~G~p~V~~~~g 389 (466)
T PRK00654 312 GQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIYAGADMFLMPSRF-EPCGLTQLYALRYGTLPIVRRTG 389 (466)
T ss_pred CEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHHhhCCEEEeCCCC-CCchHHHHHHHHCCCCEEEeCCC
Confidence 89999998863 234443 4456765 555 556678999999999999985 99999999999999999999999
Q ss_pred CcccceeecC------CceeEeCC-CHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Q 011355 402 SIVGSVIVGT------DMGYLFSP-QVESVKKALYGIWA---DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 402 ~~~~e~v~~~------~~g~l~~~-d~~~la~~i~~ll~---~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
|+. |.+.++ .+|+++++ |+++++++|.++++ + ++.+.+|++++. .++|||+.++++|.++|++++
T Consensus 390 G~~-e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~-~~~~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~~ 464 (466)
T PRK00654 390 GLA-DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQ-PPLWRALQRQAM---AQDFSWDKSAEEYLELYRRLL 464 (466)
T ss_pred Ccc-ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHHh
Confidence 998 888887 89999999 99999999999886 5 666888888775 367999999999999999876
Q ss_pred c
Q 011355 472 N 472 (488)
Q Consensus 472 ~ 472 (488)
+
T Consensus 465 ~ 465 (466)
T PRK00654 465 G 465 (466)
T ss_pred h
Confidence 5
No 7
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2.4e-42 Score=340.58 Aligned_cols=357 Identities=20% Similarity=0.264 Sum_probs=263.1
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-CCCceEEEecCCCC-ccC--cchhHH-----HHHHHHHHhc-C
Q 011355 92 AGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-YPISSLYFHLSKPT-AAG--YLDQSI-----VWQQLQTQNS-T 161 (488)
Q Consensus 92 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~--~~~~~~-----~~~~~~~~~~-~ 161 (488)
.||+++++.+|+++|.++||+|+|+|.......... ....++.+...... ..+ ...... .+..+..... .
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 699999999999999999999999998643222111 11233333322110 001 111111 1111212111 1
Q ss_pred CCCCcEEEeCCcc--hHH---hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCcc
Q 011355 162 GKPFDVIHTESVG--LRH---TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYA 236 (488)
Q Consensus 162 ~~~~Dvv~~~~~~--~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 236 (488)
..+||+||+|... ... ....++| ++.++|+..... .. .......+. ....... +...++++|
T Consensus 99 ~~~~Diih~h~~~~~~~~~~~~~~~~~p-~v~t~h~~~~~~--~~----~~~~~~~~~-~~~~~~~-----e~~~~~~~d 165 (405)
T TIGR03449 99 PGYYDLIHSHYWLSGQVGWLLRDRWGVP-LVHTAHTLAAVK--NA----ALADGDTPE-PEARRIG-----EQQLVDNAD 165 (405)
T ss_pred CCCCCeEEechHHHHHHHHHHHHhcCCC-EEEeccchHHHH--HH----hccCCCCCc-hHHHHHH-----HHHHHHhcC
Confidence 2279999999732 111 2234567 999999864211 00 000000000 0111111 124567899
Q ss_pred EEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHH
Q 011355 237 HHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALK 316 (488)
Q Consensus 237 ~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~ 316 (488)
.++++|+...+.+.+.++.+.+++.+||||+|.+.+.+. .....++++++++++ ++|+++|++.+.||++.+++|++
T Consensus 166 ~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~--~~~~~~~~~~~~~~~-~~i~~~G~l~~~K~~~~li~a~~ 242 (405)
T TIGR03449 166 RLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPG--DRATERARLGLPLDT-KVVAFVGRIQPLKAPDVLLRAVA 242 (405)
T ss_pred eEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCC--cHHHHHHhcCCCCCC-cEEEEecCCCcccCHHHHHHHHH
Confidence 999999999998888788888899999999999877654 235678888887766 78899999999999999999999
Q ss_pred HhHhhccCCCCC--eEEEEEeC----C-CchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCCh
Q 011355 317 QLLAENDTFRRS--TVFLVAGD----G-PWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDH 383 (488)
Q Consensus 317 ~l~~~~~~~~~~--~~l~ivG~----g-~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~ 383 (488)
.+.++. ++ ++|+|+|+ | +..+.+++ +.++|.|+|+++.+++.++|+.||++++||. .||||+
T Consensus 243 ~l~~~~----~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~-~E~~g~ 317 (405)
T TIGR03449 243 ELLDRD----PDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSY-NESFGL 317 (405)
T ss_pred HHHhhC----CCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCC-CCCcCh
Confidence 998877 66 99999995 2 23333433 3478999999999999999999999999997 599999
Q ss_pred HHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHH
Q 011355 384 TVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAA 462 (488)
Q Consensus 384 ~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 462 (488)
+++|||++|+|||+++.|+.. |++.++.+|+++++ |+++++++|.+++++ ++.+++|++++++.+ ++|||++++++
T Consensus 318 ~~lEAma~G~Pvi~~~~~~~~-e~i~~~~~g~~~~~~d~~~la~~i~~~l~~-~~~~~~~~~~~~~~~-~~fsw~~~~~~ 394 (405)
T TIGR03449 318 VAMEAQACGTPVVAARVGGLP-VAVADGETGLLVDGHDPADWADALARLLDD-PRTRIRMGAAAVEHA-AGFSWAATADG 394 (405)
T ss_pred HHHHHHHcCCCEEEecCCCcH-hhhccCCceEECCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 999999999999999999988 88999999999998 999999999999998 899999999999987 56999999999
Q ss_pred HHHHHHHhhc
Q 011355 463 YERLFLCISN 472 (488)
Q Consensus 463 ~~~~~~~~~~ 472 (488)
+.++|++++.
T Consensus 395 ~~~~y~~~~~ 404 (405)
T TIGR03449 395 LLSSYRDALA 404 (405)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 8
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.9e-42 Score=342.52 Aligned_cols=365 Identities=18% Similarity=0.181 Sum_probs=246.5
Q ss_pred CCCCcHHHHHHHHHHHHHHCCC--eEEEEecCCCCC----CC---C---CCCCceEEEecCCCCccC---cchh-HHHHH
Q 011355 90 SHAGGLERHALTLHLALAKRGH--ELHIFTASCLNC----SF---P---TYPISSLYFHLSKPTAAG---YLDQ-SIVWQ 153 (488)
Q Consensus 90 ~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~----~~---~---~~~~~~i~~~~~~~~~~~---~~~~-~~~~~ 153 (488)
+..||+++++.+|+++|+++|| +|+|+|...... .. . ..+++.+.+......... .+.+ .....
T Consensus 23 p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~ 102 (439)
T TIGR02472 23 ADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELAD 102 (439)
T ss_pred CCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHH
Confidence 4679999999999999999997 999999653221 11 0 122222223221110000 0111 11112
Q ss_pred HHHHHhcC-CCCCcEEEeCCcc--hHH---hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCCh-hHHHHHHHHHHHH
Q 011355 154 QLQTQNST-GKPFDVIHTESVG--LRH---TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEP-QAYALAERASKVV 226 (488)
Q Consensus 154 ~~~~~~~~-~~~~Dvv~~~~~~--~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 226 (488)
.+.....+ ..+|||||+|+.. +.. ....++| ++.+.|+...... . ......... .....+....+..
T Consensus 103 ~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p-~V~t~H~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~ 176 (439)
T TIGR02472 103 NLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVP-LIFTGHSLGREKR-R----RLLAAGLKPQQIEKQYNISRRIE 176 (439)
T ss_pred HHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCC-EEEecccccchhh-h----hcccCCCChhhhhhhcchHHHHH
Confidence 22222222 1269999999732 111 1223568 9999998532210 0 000000000 0011111111112
Q ss_pred HHhhhcCCccEEEEcChhhHH-HHHHHhcCCCCcEEEecCCccCCCcCCCccc--chhh---hhhhCCCCCCcEEEEEEe
Q 011355 227 EEVKFFPKYAHHVATSDHCGD-VLKRIYMIPEERVHVILNGVDEEVFKPDVAM--GKDF---KKKFGIPENRSLVLGMAG 300 (488)
Q Consensus 227 ~~~~~~~~~d~ii~~S~~~~~-~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~--~~~~---r~~~~i~~~~~~~i~~~G 300 (488)
.+...++.+|.++++|+.... .+....+++++++.+||||+|.+.|.+.... .... +++++.++++ ++++++|
T Consensus 177 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~vG 255 (439)
T TIGR02472 177 AEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEK-PPILAIS 255 (439)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCC-cEEEEEc
Confidence 233567899999999876433 3444336788999999999999888654321 1112 2334455555 6888999
Q ss_pred eeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhH-----------Hh----h--hCCcEEEeCccCHHHHHH
Q 011355 301 RLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGAR-----------YR----D--LGTNVIVLGPLDQTRLAM 363 (488)
Q Consensus 301 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~-----------~~----~--l~~~V~~~g~v~~~~l~~ 363 (488)
|+.+.||++.+++|++.+.+.... +++. +++|+|+..+. +. + +.++|+|+|+++.+++.+
T Consensus 256 rl~~~Kg~~~li~A~~~l~~~~~~--~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~ 332 (439)
T TIGR02472 256 RPDRRKNIPSLVEAYGRSPKLQEM--ANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPE 332 (439)
T ss_pred CCcccCCHHHHHHHHHhChhhhhh--ccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHH
Confidence 999999999999999865322100 3333 36787764321 11 1 457899999999999999
Q ss_pred HHHhc----CEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHH
Q 011355 364 FYNAI----DIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREV 438 (488)
Q Consensus 364 ~~~~a----dv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~ 438 (488)
+|+.| |++|+||. .|+||++++|||+||+|||+|+.||.+ |++.++.+|+++++ |+++++++|.+++++ ++.
T Consensus 333 ~~~~a~~~~Dv~v~pS~-~E~fg~~~lEAma~G~PvV~s~~gg~~-eiv~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~ 409 (439)
T TIGR02472 333 LYRLAARSRGIFVNPAL-TEPFGLTLLEAAACGLPIVATDDGGPR-DIIANCRNGLLVDVLDLEAIASALEDALSD-SSQ 409 (439)
T ss_pred HHHHHhhcCCEEecccc-cCCcccHHHHHHHhCCCEEEeCCCCcH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHhC-HHH
Confidence 99987 99999997 599999999999999999999999998 89999999999999 999999999999999 899
Q ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 011355 439 LEKKGLVARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 439 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
+++|++++++++.++|||+.++++|.+++
T Consensus 410 ~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 410 WQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999886
No 9
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.5e-41 Score=340.60 Aligned_cols=389 Identities=17% Similarity=0.200 Sum_probs=274.1
Q ss_pred CCCCCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--------------C-------
Q 011355 70 SNPPLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--------------Y------- 128 (488)
Q Consensus 70 ~~~~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--------------~------- 128 (488)
..+..++|||++|+....|....||...++..|.++|++.||+|.|+++......... .
T Consensus 475 ~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~ 554 (977)
T PLN02939 475 LSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKN 554 (977)
T ss_pred cCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEE
Confidence 4444578999999998877778999999999999999999999999999765332000 0
Q ss_pred -----CCceEEEecCC----------CCccCcchhHHHH----HHHHHHhc-CCCCCcEEEeCCcc--h--HHhhh----
Q 011355 129 -----PISSLYFHLSK----------PTAAGYLDQSIVW----QQLQTQNS-TGKPFDVIHTESVG--L--RHTRA---- 180 (488)
Q Consensus 129 -----~~~~i~~~~~~----------~~~~~~~~~~~~~----~~~~~~~~-~~~~~Dvv~~~~~~--~--~~~~~---- 180 (488)
..+++.+.+.. +..++..+....+ +....... ...+|||||+|.+. + +.+..
T Consensus 555 ~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~ 634 (977)
T PLN02939 555 KIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAP 634 (977)
T ss_pred EEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhh
Confidence 00112222111 1111111111111 11112221 12389999999753 2 22221
Q ss_pred ---ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhH--HHH----HHHHHHHHHHhhhcCCccEEEEcChhhHHHHHH
Q 011355 181 ---RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQA--YAL----AERASKVVEEVKFFPKYAHHVATSDHCGDVLKR 251 (488)
Q Consensus 181 ---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~ 251 (488)
...+ ++.++|+..+......-.......+...+. ..+ ...+.-+. ..+-.+|.|+++|+..++.+..
T Consensus 635 ~~~~~~k-tVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK---~GIv~AD~VtTVSptYA~EI~t 710 (977)
T PLN02939 635 KGFNSAR-ICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVK---GAIVYSNIVTTVSPTYAQEVRS 710 (977)
T ss_pred ccCCCCc-EEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHH---HHHHhCCeeEeeeHHHHHHHHH
Confidence 2245 999999997754322111011111111000 011 11111111 2234689999999999998875
Q ss_pred H--------hcCCCCcEEEecCCccCCCcCCCcc-----------------cchhhhhhhCCCCC--CcEEEEEEeeecc
Q 011355 252 I--------YMIPEERVHVILNGVDEEVFKPDVA-----------------MGKDFKKKFGIPEN--RSLVLGMAGRLVK 304 (488)
Q Consensus 252 ~--------~g~~~~~i~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~~--~~~~i~~~Grl~~ 304 (488)
. ++....++.+|+||||.+.+.+... .+..+++++|++.+ +.++|+++||+.+
T Consensus 711 e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~ 790 (977)
T PLN02939 711 EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVP 790 (977)
T ss_pred HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCc
Confidence 3 2346789999999999998877543 24678999999853 3378999999999
Q ss_pred ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch---hHHhh----h--CCcEEEeCccCHHHHHHHHHhcCEEEeCC
Q 011355 305 DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG---ARYRD----L--GTNVIVLGPLDQTRLAMFYNAIDIFVNPT 375 (488)
Q Consensus 305 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~---~~~~~----l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps 375 (488)
+||++.+++|+..+.. ++++|+|+|+|+.. +.+++ + .++|.|+|..+.+....+|+.||+||+||
T Consensus 791 QKGiDlLleA~~~Ll~------~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPS 864 (977)
T PLN02939 791 QKGVHLIRHAIYKTAE------LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPS 864 (977)
T ss_pred ccChHHHHHHHHHHhh------cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECC
Confidence 9999999999988864 57899999999753 33333 2 36899999988777889999999999999
Q ss_pred CCCCCCChHHHHHHHcCCcEEEeCCCCcccceeec---------CCceeEeCC-CHHHHHHHHHHHHh---cCHHHHHHH
Q 011355 376 LRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG---------TDMGYLFSP-QVESVKKALYGIWA---DGREVLEKK 442 (488)
Q Consensus 376 ~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~---------~~~g~l~~~-d~~~la~~i~~ll~---~~~~~~~~~ 442 (488)
.+ |+||++++|||+||+|+|++++||.. +.|.+ +.+|+++++ |+++++++|.+++. ++++.+.+|
T Consensus 865 r~-EPfGLvqLEAMAyGtPPVVs~vGGL~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L 942 (977)
T PLN02939 865 MF-EPCGLTQMIAMRYGSVPIVRKTGGLN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQL 942 (977)
T ss_pred Cc-cCCcHHHHHHHHCCCCEEEecCCCCc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 85 99999999999999999999999998 77765 578999999 99999999998875 238899999
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHHhhcc
Q 011355 443 GLVARKRGLNLFTATKMAAAYERLFLCISND 473 (488)
Q Consensus 443 ~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 473 (488)
++++. .+.|||+.++++|.++|+++++.
T Consensus 943 ~~~am---~~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 943 VQKDM---NIDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHH---HhcCCHHHHHHHHHHHHHHHHHh
Confidence 88764 36799999999999999998763
No 10
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=2.5e-41 Score=328.17 Aligned_cols=344 Identities=18% Similarity=0.224 Sum_probs=258.0
Q ss_pred EEEEEe-cCCC-CCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCc--eEEEe-cCCCCc--------cC
Q 011355 78 KIALFV-KKWP-HRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPIS--SLYFH-LSKPTA--------AG 144 (488)
Q Consensus 78 kIl~i~-~~~p-~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--~i~~~-~~~~~~--------~~ 144 (488)
||++++ +.+| |+...||+|+++..+++.|. ++|++++....+......... .++.. ...... ..
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLD 80 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccC
Confidence 676665 4554 23478999999999999994 399999998865332222221 22222 111000 00
Q ss_pred cchhHHHHHHHHHHhcCCCCCcEEEeCCcch-HHhhhc---cCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHH
Q 011355 145 YLDQSIVWQQLQTQNSTGKPFDVIHTESVGL-RHTRAR---NLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAE 220 (488)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~-~~~~~~---~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (488)
...+......+....... ++|+||+|+... ...+.. +.+ ++.++|+.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~-~v~~~h~~~~--------------------~---- 134 (380)
T PRK15484 81 PLPYSQRILNIAHKFTIT-KDSVIVIHNSMKLYRQIRERAPQAK-LVMHMHNAFE--------------------P---- 134 (380)
T ss_pred chhHHHHHHHHHHhcCCC-CCcEEEEeCcHHhHHHHHhhCCCCC-EEEEEecccC--------------------h----
Confidence 112222222222222222 799999997432 221222 224 8888997311 0
Q ss_pred HHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEe
Q 011355 221 RASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAG 300 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 300 (488)
..+.+++.++++|++.++.+.+.+ +..++.+||||+|.+.+.+.. ...+++++++++++ .+++++|
T Consensus 135 ---------~~~~~~~~ii~~S~~~~~~~~~~~--~~~~i~vIpngvd~~~~~~~~--~~~~~~~~~~~~~~-~~il~~G 200 (380)
T PRK15484 135 ---------ELLDKNAKIIVPSQFLKKFYEERL--PNADISIVPNGFCLETYQSNP--QPNLRQQLNISPDE-TVLLYAG 200 (380)
T ss_pred ---------hHhccCCEEEEcCHHHHHHHHhhC--CCCCEEEecCCCCHHHcCCcc--hHHHHHHhCCCCCC-eEEEEec
Confidence 112467899999999999988743 567899999999988776533 24567888887776 7889999
Q ss_pred eeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch---------hHHh----hhCCcEEEeCccCHHHHHHHHHh
Q 011355 301 RLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG---------ARYR----DLGTNVIVLGPLDQTRLAMFYNA 367 (488)
Q Consensus 301 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~---------~~~~----~l~~~V~~~g~v~~~~l~~~~~~ 367 (488)
|+.+.||++.+++|+..+.+++ |+++|+|+|+|+.. +.++ +++.+|.|+|+++.+++.++|+.
T Consensus 201 rl~~~Kg~~~Li~A~~~l~~~~----p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~ 276 (380)
T PRK15484 201 RISPDKGILLLMQAFEKLATAH----SNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL 276 (380)
T ss_pred cCccccCHHHHHHHHHHHHHhC----CCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh
Confidence 9999999999999999999888 99999999987532 1222 34578999999999999999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCcee-EeCC-CHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGY-LFSP-QVESVKKALYGIWADGREVLEKKGLV 445 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~-l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~ 445 (488)
||++|+||.+.|+||++++|||+||+|||+++.||++ |++.++.+|+ ++++ |+++++++|.++++| ++. .+|+++
T Consensus 277 aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~-Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d-~~~-~~~~~~ 353 (380)
T PRK15484 277 ADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGIT-EFVLEGITGYHLAEPMTSDSIISDINRTLAD-PEL-TQIAEQ 353 (380)
T ss_pred CCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcH-hhcccCCceEEEeCCCCHHHHHHHHHHHHcC-HHH-HHHHHH
Confidence 9999999975699999999999999999999999998 8999999999 5567 999999999999998 764 789999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHhh
Q 011355 446 ARKRGLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 446 a~~~~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
+++.+.++|||++++++++++|++..
T Consensus 354 ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 354 AKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998753
No 11
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=2.9e-41 Score=334.44 Aligned_cols=385 Identities=19% Similarity=0.232 Sum_probs=266.3
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC---------C---C---------Cce
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT---------Y---P---------ISS 132 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---------~---~---------~~~ 132 (488)
|.+|||+++++..-|....||....+..|.++|+++||+|.|+.+......... . + .++
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 367999999998777789999999999999999999999999999764331000 0 0 011
Q ss_pred EEEec-------CCCC-ccC------cchhHHH---H-HHHHHHhc---CCCCCcEEEeCCcc---hHHhhh----ccCC
Q 011355 133 LYFHL-------SKPT-AAG------YLDQSIV---W-QQLQTQNS---TGKPFDVIHTESVG---LRHTRA----RNLT 184 (488)
Q Consensus 133 i~~~~-------~~~~-~~~------~~~~~~~---~-~~~~~~~~---~~~~~Dvv~~~~~~---~~~~~~----~~~p 184 (488)
+.+.. .++. .++ ..+.... | +....... ...+|||||+|++. ++.++. ..+|
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~~~~~ 160 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGRPAPG 160 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCCCCCC
Confidence 11110 1110 110 0111111 1 11111111 12389999999842 222222 2346
Q ss_pred cEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHh---------cC
Q 011355 185 NVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIY---------MI 255 (488)
Q Consensus 185 ~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~---------g~ 255 (488)
.+.++|+..+..............+.....................+..+|.|+++|+..++.+.+.+ +.
T Consensus 161 -~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~ 239 (485)
T PRK14099 161 -TVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQ 239 (485)
T ss_pred -EEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHh
Confidence 99999998654322111111011110000000000000000012456789999999999999887532 12
Q ss_pred CCCcEEEecCCccCCCcCCCccc-----------------chhhhhhhCCCCC-CcEEEEEEeeeccccChHHHHHHHHH
Q 011355 256 PEERVHVILNGVDEEVFKPDVAM-----------------GKDFKKKFGIPEN-RSLVLGMAGRLVKDKGHPLMFEALKQ 317 (488)
Q Consensus 256 ~~~~i~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~~i~~~-~~~~i~~~Grl~~~Kg~~~ll~a~~~ 317 (488)
+.+++.+|+||+|.+.|.+.... +..+++++|++.+ +.++++++||+.++||++.+++|+..
T Consensus 240 ~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~ 319 (485)
T PRK14099 240 RADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPT 319 (485)
T ss_pred hCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHH
Confidence 46799999999999988764331 3568889999753 33788899999999999999999998
Q ss_pred hHhhccCCCCCeEEEEEeCCCc--hhHHhhh----CCcE-EEeCccCHHHHHHHH-HhcCEEEeCCCCCCCCChHHHHHH
Q 011355 318 LLAENDTFRRSTVFLVAGDGPW--GARYRDL----GTNV-IVLGPLDQTRLAMFY-NAIDIFVNPTLRAQGLDHTVLEAM 389 (488)
Q Consensus 318 l~~~~~~~~~~~~l~ivG~g~~--~~~~~~l----~~~V-~~~g~v~~~~l~~~~-~~adv~v~ps~~~eg~~~~~lEAm 389 (488)
+.+ .+++|+|+|+|+. .+.++++ ..++ .++|+ ++++..+| +.||++|+||. .|+||++.+|||
T Consensus 320 l~~------~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~--~~~l~~~~~a~aDifv~PS~-~E~fGl~~lEAm 390 (485)
T PRK14099 320 LLG------EGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY--DEALAHLIQAGADALLVPSR-FEPCGLTQLCAL 390 (485)
T ss_pred HHh------cCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC--CHHHHHHHHhcCCEEEECCc-cCCCcHHHHHHH
Confidence 875 4689999999863 3444443 3455 78998 77999887 57999999998 499999999999
Q ss_pred HcCCcEEEeCCCCcccceeecC---------CceeEeCC-CHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHhhhCCH
Q 011355 390 LSGKPLMATRLASIVGSVIVGT---------DMGYLFSP-QVESVKKALYG---IWADGREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 390 a~G~PVI~~~~~~~~~e~v~~~---------~~g~l~~~-d~~~la~~i~~---ll~~~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
+||+|+|++++||.. |.+.++ .+|+++++ |+++++++|.+ ++++ ++.+++|+++++ .++|||
T Consensus 391 a~G~ppVvs~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d-~~~~~~l~~~~~---~~~fSw 465 (485)
T PRK14099 391 RYGAVPVVARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFAD-PVAWRRLQRNGM---TTDVSW 465 (485)
T ss_pred HCCCCcEEeCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHhh---hhcCCh
Confidence 999988889999998 777765 68999999 99999999997 6667 899999999886 367999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 011355 457 TKMAAAYERLFLCISND 473 (488)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (488)
++++++|+++|+++++.
T Consensus 466 ~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 466 RNPAQHYAALYRSLVAE 482 (485)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998763
No 12
>PLN02316 synthase/transferase
Probab=100.00 E-value=3.6e-41 Score=347.00 Aligned_cols=361 Identities=16% Similarity=0.198 Sum_probs=263.6
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC----CC-----------------CCce
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFP----TY-----------------PISS 132 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~-----------------~~~~ 132 (488)
..+|||++|+..++|....||...++..|.++|++.||+|.|+++........ .. ..++
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 45699999999888877899999999999999999999999999986532110 00 0011
Q ss_pred EEEecCCCC--c------cCcchhHH----HHHHHHHH-hcCCCCCcEEEeCCc--ch-HHhhh--------ccCCcEEE
Q 011355 133 LYFHLSKPT--A------AGYLDQSI----VWQQLQTQ-NSTGKPFDVIHTESV--GL-RHTRA--------RNLTNVVV 188 (488)
Q Consensus 133 i~~~~~~~~--~------~~~~~~~~----~~~~~~~~-~~~~~~~Dvv~~~~~--~~-~~~~~--------~~~p~~v~ 188 (488)
+.+....+. . ++..+... .-+..... .....+|||||+|+. ++ +.++. .++| ++.
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p-~V~ 743 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKAR-VVF 743 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCC-EEE
Confidence 111111110 1 11011111 11111111 112238999999974 22 22221 2356 999
Q ss_pred eeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCC--CCcEEEecCC
Q 011355 189 SWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIP--EERVHVILNG 266 (488)
Q Consensus 189 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~--~~~i~vi~ng 266 (488)
++|+..+.. ...+ ..+..+|.|+++|+..++.+...+.+. ..++.+|+||
T Consensus 744 TiHnl~~~~-------------------n~lk---------~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NG 795 (1036)
T PLN02316 744 TIHNLEFGA-------------------NHIG---------KAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNG 795 (1036)
T ss_pred EeCCcccch-------------------hHHH---------HHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECC
Confidence 999853210 0000 234679999999999999988744443 4799999999
Q ss_pred ccCCCcCCCcc------------------cchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCC
Q 011355 267 VDEEVFKPDVA------------------MGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRS 328 (488)
Q Consensus 267 vd~~~~~~~~~------------------~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~ 328 (488)
||.+.+.+... .+..+++++|++..+.++++++||+.++||++.|++|+..+.+ .+
T Consensus 796 ID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~------~~ 869 (1036)
T PLN02316 796 IDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE------RN 869 (1036)
T ss_pred ccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh------cC
Confidence 99987655321 1345889999985344889999999999999999999999875 46
Q ss_pred eEEEEEeCCCch---hHHhh----h----CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEE
Q 011355 329 TVFLVAGDGPWG---ARYRD----L----GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMA 397 (488)
Q Consensus 329 ~~l~ivG~g~~~---~~~~~----l----~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~ 397 (488)
++|+|+|+|++. +.+++ + .++|.|.|..+......+|+.||+||+||. .|+||++.+|||+||+|+|+
T Consensus 870 ~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~-~EP~GLvqLEAMa~GtppVv 948 (1036)
T PLN02316 870 GQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI-FEPCGLTQLTAMRYGSIPVV 948 (1036)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc-ccCccHHHHHHHHcCCCeEE
Confidence 899999998753 22222 2 357999887654444589999999999997 59999999999999999999
Q ss_pred eCCCCcccceeecC-------------CceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 398 TRLASIVGSVIVGT-------------DMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 398 ~~~~~~~~e~v~~~-------------~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
+++||++ |.|.++ .+|++|++ |+++++.+|.+++.+..+....+++.+++.+.+.|||+.++++|
T Consensus 949 s~vGGL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 949 RKTGGLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred EcCCCcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 9999998 787763 68999999 99999999999998744556677888888888899999999999
Q ss_pred HHHHHHhh
Q 011355 464 ERLFLCIS 471 (488)
Q Consensus 464 ~~~~~~~~ 471 (488)
+++|+++.
T Consensus 1028 ~~LY~~a~ 1035 (1036)
T PLN02316 1028 MELYHSAR 1035 (1036)
T ss_pred HHHHHHHh
Confidence 99998875
No 13
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.8e-41 Score=332.74 Aligned_cols=361 Identities=23% Similarity=0.337 Sum_probs=264.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCC--CccCcchhHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKP--TAAGYLDQSIVWQQ 154 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~ 154 (488)
|||++++..|||. ..||.++++.+|+++|.++ ++|+|++...... . ..++.+..... ...........+..
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF--D---SEGLTVKGYRPWSELKEANKALGTFSV 73 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh--c---CCCeEEEEecChhhccchhhhhhhhhH
Confidence 8999999988873 4699999999999999987 7888887654321 1 12222221111 00010111111111
Q ss_pred HHHHhcCCCCCcEEEeCCcch--HHh---hhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHh
Q 011355 155 LQTQNSTGKPFDVIHTESVGL--RHT---RARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEV 229 (488)
Q Consensus 155 ~~~~~~~~~~~Dvv~~~~~~~--~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
.........++|+||+|+... ..+ ...++| ++.+.|+........ ....... ..+...+ +.
T Consensus 74 ~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~---~~~~~~~-----~~~~~~~-----~~ 139 (388)
T TIGR02149 74 DLAMANDPVDADVVHSHTWYTFLAGHLAKKLYDKP-LVVTAHSLEPLRPWK---EEQLGGG-----YKLSSWA-----EK 139 (388)
T ss_pred HHHHhhCCCCCCeEeecchhhhhHHHHHHHhcCCC-EEEEeeccccccccc---ccccccc-----hhHHHHH-----HH
Confidence 111112222799999997421 112 223567 999999864321100 0000000 1111111 12
Q ss_pred hhcCCccEEEEcChhhHHHHHHHh-cCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccCh
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIY-MIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGH 308 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~-g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~ 308 (488)
..++.+|.++++|+..++.+.+.+ +++..++.++|||+|.+.+.+. .....++++++++++ ++++++||+.+.||+
T Consensus 140 ~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~--~~~~~~~~~~~~~~~-~~i~~~Grl~~~Kg~ 216 (388)
T TIGR02149 140 TAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPD--DGNVVLDRYGIDRSR-PYILFVGRITRQKGV 216 (388)
T ss_pred HHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCC--chHHHHHHhCCCCCc-eEEEEEcccccccCH
Confidence 456889999999999999998876 6777899999999999877653 235678888987776 789999999999999
Q ss_pred HHHHHHHHHhHhhccCCCCCeEEEEEeCCCchh----HHhh----hC---CcEEEe-CccCHHHHHHHHHhcCEEEeCCC
Q 011355 309 PLMFEALKQLLAENDTFRRSTVFLVAGDGPWGA----RYRD----LG---TNVIVL-GPLDQTRLAMFYNAIDIFVNPTL 376 (488)
Q Consensus 309 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~----~~~~----l~---~~V~~~-g~v~~~~l~~~~~~adv~v~ps~ 376 (488)
+.+++|++.+. ++++++++|+|+... .+++ +. .+|.+. |.++.+++..+|+.||++|+||.
T Consensus 217 ~~li~a~~~l~-------~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~ 289 (388)
T TIGR02149 217 PHLLDAVHYIP-------KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSI 289 (388)
T ss_pred HHHHHHHHHHh-------hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCc
Confidence 99999999884 567889988765432 2222 22 347765 67899999999999999999997
Q ss_pred CCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CH------HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011355 377 RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QV------ESVKKALYGIWADGREVLEKKGLVARKR 449 (488)
Q Consensus 377 ~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~------~~la~~i~~ll~~~~~~~~~~~~~a~~~ 449 (488)
.|++|++++|||+||+|||+++.++.. |++.++.+|+++++ |. ++++++|.+++++ ++.+++|++++++.
T Consensus 290 -~e~~g~~~lEA~a~G~PvI~s~~~~~~-e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~a~~~ 366 (388)
T TIGR02149 290 -YEPLGIVNLEAMACGTPVVASATGGIP-EVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD-PELAKKMGIAGRKR 366 (388)
T ss_pred -cCCCChHHHHHHHcCCCEEEeCCCCHH-HHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 499999999999999999999999998 89999999999998 77 9999999999998 99999999999999
Q ss_pred HhhhCCHHHHHHHHHHHHHHhh
Q 011355 450 GLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 450 ~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
+.++|||+.+++++.++|++++
T Consensus 367 ~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 367 AEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHhCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999998763
No 14
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=9.1e-42 Score=341.43 Aligned_cols=380 Identities=21% Similarity=0.263 Sum_probs=266.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-------------------------CCCc
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-------------------------YPIS 131 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------------------------~~~~ 131 (488)
|||++++..++|....||...++..|.++|+++||+|.|+++......... ...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 899999998777667999999999999999999999999998765432110 0011
Q ss_pred eEEEecC-------CC-CccC--cchh----HHHHHHHHHH-hcCCCCCcEEEeCCcc--h-HHhhhc-----cCCcEEE
Q 011355 132 SLYFHLS-------KP-TAAG--YLDQ----SIVWQQLQTQ-NSTGKPFDVIHTESVG--L-RHTRAR-----NLTNVVV 188 (488)
Q Consensus 132 ~i~~~~~-------~~-~~~~--~~~~----~~~~~~~~~~-~~~~~~~Dvv~~~~~~--~-~~~~~~-----~~p~~v~ 188 (488)
++.+... ++ ..++ ..+. ...-...... .....+|||||+|++. + +.+++. ++| ++.
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~~~~-~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPNPIK-TVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCCCCC-EEE
Confidence 1222111 10 0111 0011 0011111111 1122389999999742 2 222222 156 999
Q ss_pred eeeCCcchhhhhh-hhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHH-hc--------CCCC
Q 011355 189 SWHGIAYETIHSD-IIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRI-YM--------IPEE 258 (488)
Q Consensus 189 ~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~-~g--------~~~~ 258 (488)
++|+..+...... .... ...+.............+..-....+..+|.++++|+..++.+... +| .++.
T Consensus 160 TiH~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ 238 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSE-LGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSG 238 (473)
T ss_pred EcCCCccCCcCCHHHHHH-cCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCC
Confidence 9999764322111 1110 1111000000000000001011245688999999999998887642 22 2357
Q ss_pred cEEEecCCccCCCcCCCcc-----------------cchhhhhhhCCCCC-CcEEEEEEeeeccccChHHHHHHHHHhHh
Q 011355 259 RVHVILNGVDEEVFKPDVA-----------------MGKDFKKKFGIPEN-RSLVLGMAGRLVKDKGHPLMFEALKQLLA 320 (488)
Q Consensus 259 ~i~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~~-~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~ 320 (488)
++.+|+||+|.+.+.+... .+..+++++|++.+ +.++++++||+.++||++.+++|+.++.+
T Consensus 239 ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~ 318 (473)
T TIGR02095 239 KLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE 318 (473)
T ss_pred CeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH
Confidence 9999999999998875422 23568899999862 33789999999999999999999999875
Q ss_pred hccCCCCCeEEEEEeCCC--chhHHhh----hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCc
Q 011355 321 ENDTFRRSTVFLVAGDGP--WGARYRD----LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKP 394 (488)
Q Consensus 321 ~~~~~~~~~~l~ivG~g~--~~~~~~~----l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~P 394 (488)
.+++|+|+|+|+ ..+.+++ ...++.+.+..+.+++..+|+.||++++||.. |+||++++|||+||+|
T Consensus 319 ------~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~-E~~gl~~lEAma~G~p 391 (473)
T TIGR02095 319 ------LGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRF-EPCGLTQLYAMRYGTV 391 (473)
T ss_pred ------cCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCc-CCcHHHHHHHHHCCCC
Confidence 458999999985 3344443 34678888888888899999999999999974 9999999999999999
Q ss_pred EEEeCCCCcccceeecC------CceeEeCC-CHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 395 LMATRLASIVGSVIVGT------DMGYLFSP-QVESVKKALYGIWA----DGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 395 VI~~~~~~~~~e~v~~~------~~g~l~~~-d~~~la~~i~~ll~----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
||+++.||.. |++.++ .+|+++++ |+++++++|.+++. + ++.+++|++++. .++|||++++++|
T Consensus 392 vI~s~~gg~~-e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~-~~~~~~~~~~~~---~~~fsw~~~a~~~ 466 (473)
T TIGR02095 392 PIVRRTGGLA-DTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD-PSLWEALQKNAM---SQDFSWDKSAKQY 466 (473)
T ss_pred eEEccCCCcc-ceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh---ccCCCcHHHHHHH
Confidence 9999999998 888887 89999999 99999999999887 6 888999998875 3579999999999
Q ss_pred HHHHHHh
Q 011355 464 ERLFLCI 470 (488)
Q Consensus 464 ~~~~~~~ 470 (488)
.++|+++
T Consensus 467 ~~~Y~~l 473 (473)
T TIGR02095 467 VELYRSL 473 (473)
T ss_pred HHHHHhC
Confidence 9999864
No 15
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=4.5e-41 Score=329.70 Aligned_cols=359 Identities=18% Similarity=0.192 Sum_probs=253.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcch----------
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLD---------- 147 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------- 147 (488)
||+|++.+||. ....|+++|.++||+|+++|......... +++.+.+........+...
T Consensus 1 ~il~~~~~~p~---------~~~~la~~L~~~G~~v~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (396)
T cd03818 1 RILFVHQNFPG---------QFRHLAPALAAQGHEVVFLTEPNAAPPPG--GVRVVRYRPPRGPTSGTHPYLREFEEAVL 69 (396)
T ss_pred CEEEECCCCch---------hHHHHHHHHHHCCCEEEEEecCCCCCCCC--CeeEEEecCCCCCCCCCCccchhHHHHHH
Confidence 68999998875 24579999999999999999987544332 3444444432211111111
Q ss_pred -hHHHHHHHHHHhcCCCCCcEEEeCCcch-HHhhhc---cCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 148 -QSIVWQQLQTQNSTGKPFDVIHTESVGL-RHTRAR---NLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~Dvv~~~~~~~-~~~~~~---~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
....+..+.....+..+||+||+|+... ...+.. ..| ++...|-.... ...+.. + .+..........++
T Consensus 70 ~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~-~v~~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~ 143 (396)
T cd03818 70 RGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAP-LIGYFEFYYRA-EGADVG---F-DPEFPPSLDDALRL 143 (396)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCC-EEEEEeeeecC-CCCCCC---C-CCCCCCchhHHHHH
Confidence 1122233333323334799999997432 222222 234 55544321110 000000 0 00000000000111
Q ss_pred H-HHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEee
Q 011355 223 S-KVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR 301 (488)
Q Consensus 223 ~-~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 301 (488)
. +.......++.+|.+|++|++.++.+.+.+ .+++.|||||+|.+.|.+........+....+++++ ++++|+||
T Consensus 144 ~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~---~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~-~~i~~vgR 219 (396)
T cd03818 144 RNRNALILLALAQADAGVSPTRWQRSTFPAEL---RSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGD-EVITFVAR 219 (396)
T ss_pred HHhhhHhHHHHHhCCEEECCCHHHHhhCcHhh---ccceEEeCCCccccccCCCchhhhcccccccCCCCC-eEEEEECC
Confidence 1 100112457899999999999999987755 378999999999998876544323333333344555 78889997
Q ss_pred -eccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC------------chh-HHhhh-----CCcEEEeCccCHHHHH
Q 011355 302 -LVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP------------WGA-RYRDL-----GTNVIVLGPLDQTRLA 362 (488)
Q Consensus 302 -l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~------------~~~-~~~~l-----~~~V~~~g~v~~~~l~ 362 (488)
+.+.||++.+++|+..+.++. |+++|+|+|++. +.+ .++++ .++|+|+|+++++++.
T Consensus 220 ~l~~~Kg~~~ll~a~~~l~~~~----~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~ 295 (396)
T cd03818 220 NLEPYRGFHVFMRALPRLLRAR----PDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYL 295 (396)
T ss_pred CcccccCHHHHHHHHHHHHHHC----CCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHH
Confidence 999999999999999999888 899999999732 111 12222 3689999999999999
Q ss_pred HHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHH
Q 011355 363 MFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEK 441 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~ 441 (488)
.+|+.||++++||. .|++|++++||||||+|||+++.++.. |++.++.+|+++++ |+++++++|.+++++ ++.+.+
T Consensus 296 ~~l~~adv~v~~s~-~e~~~~~llEAmA~G~PVIas~~~g~~-e~i~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~ 372 (396)
T cd03818 296 ALLQVSDVHVYLTY-PFVLSWSLLEAMACGCLVVGSDTAPVR-EVITDGENGLLVDFFDPDALAAAVIELLDD-PARRAR 372 (396)
T ss_pred HHHHhCcEEEEcCc-ccccchHHHHHHHCCCCEEEcCCCCch-hhcccCCceEEcCCCCHHHHHHHHHHHHhC-HHHHHH
Confidence 99999999999996 699999999999999999999999998 89999999999998 999999999999999 899999
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHH
Q 011355 442 KGLVARKRGLNLFTATKMAAAYE 464 (488)
Q Consensus 442 ~~~~a~~~~~~~fs~~~~~~~~~ 464 (488)
|++++++.+.++|||+.++++|.
T Consensus 373 l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 373 LRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999999875
No 16
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.8e-40 Score=323.78 Aligned_cols=351 Identities=24% Similarity=0.335 Sum_probs=263.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCC----CCccCcchhHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSK----PTAAGYLDQSIVW 152 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~ 152 (488)
|||++++. | ..||.++++.+++++|.++||+|+|++......... ..+.+.+.... +............
T Consensus 1 mki~~~~~--p---~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (371)
T cd04962 1 MKIGIVCY--P---TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDE--YSPNIFFHEVEVPQYPLFQYPPYDLALA 73 (371)
T ss_pred CceeEEEE--e---CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhh--hccCeEEEEecccccchhhcchhHHHHH
Confidence 79999973 2 579999999999999999999999998764321111 11122221110 0000111111122
Q ss_pred HHHHHHhcCCCCCcEEEeCCcc---hHHhhh------ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHH
Q 011355 153 QQLQTQNSTGKPFDVIHTESVG---LRHTRA------RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERAS 223 (488)
Q Consensus 153 ~~~~~~~~~~~~~Dvv~~~~~~---~~~~~~------~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
..+.+..++. +||+||+|... ...++. .++| ++.+.|+....... . .. ....+.
T Consensus 74 ~~l~~~i~~~-~~divh~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~----------~-~~----~~~~~~ 136 (371)
T cd04962 74 SKIAEVAKRY-KLDLLHVHYAVPHAVAAYLAREILGKKDLP-VVTTLHGTDITLVG----------Q-DP----SFQPAT 136 (371)
T ss_pred HHHHHHHhcC-CccEEeecccCCccHHHHHHHHhcCcCCCc-EEEEEcCCcccccc----------c-cc----cchHHH
Confidence 3333333333 89999998532 122211 1467 88999975322110 0 00 001111
Q ss_pred HHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeec
Q 011355 224 KVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLV 303 (488)
Q Consensus 224 ~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~ 303 (488)
+ ..++++|.++++|+...+.+.+.++ ...++.++|||+|...+.+... ...++++++++++ .+++++|++.
T Consensus 137 ~-----~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~i~vi~n~~~~~~~~~~~~--~~~~~~~~~~~~~-~~il~~g~l~ 207 (371)
T cd04962 137 R-----FSIEKSDGVTAVSESLRQETYELFD-ITKEIEVIPNFVDEDRFRPKPD--EALKRRLGAPEGE-KVLIHISNFR 207 (371)
T ss_pred H-----HHHhhCCEEEEcCHHHHHHHHHhcC-CcCCEEEecCCcCHhhcCCCch--HHHHHhcCCCCCC-eEEEEecccc
Confidence 1 3467899999999999999988654 4678999999999876654332 4466778887777 7889999999
Q ss_pred cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC
Q 011355 304 KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 304 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 377 (488)
+.||++.+++++..+.++ .+++++++|.|+..+.+++ +.++|.|.|.. +++.++|+.||++|+||.
T Consensus 208 ~~K~~~~li~a~~~l~~~-----~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~v~ps~- 279 (371)
T cd04962 208 PVKRIDDVIRIFAKVRKE-----VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQ--DHVEELLSIADLFLLPSE- 279 (371)
T ss_pred cccCHHHHHHHHHHHHhc-----CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCc--ccHHHHHHhcCEEEeCCC-
Confidence 999999999999998765 3689999999987666554 24689999985 589999999999999997
Q ss_pred CCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCH
Q 011355 378 AQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
.||+|++++|||++|+|||+++.++.. |++.++.+|+++++ |+++++++|.+++++ ++.+.+|++++++.+.++|||
T Consensus 280 ~E~~~~~~~EAma~g~PvI~s~~~~~~-e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~fs~ 357 (371)
T cd04962 280 KESFGLAALEAMACGVPVVASNAGGIP-EVVKHGETGFLVDVGDVEAMAEYALSLLED-DELWQEFSRAARNRAAERFDS 357 (371)
T ss_pred cCCCccHHHHHHHcCCCEEEeCCCCch-hhhcCCCceEEcCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCH
Confidence 599999999999999999999999988 89999999999999 999999999999998 999999999999998889999
Q ss_pred HHHHHHHHHHHHHh
Q 011355 457 TKMAAAYERLFLCI 470 (488)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (488)
+.+++++.++|+++
T Consensus 358 ~~~~~~~~~~y~~~ 371 (371)
T cd04962 358 ERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999763
No 17
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=6.7e-40 Score=322.06 Aligned_cols=363 Identities=18% Similarity=0.192 Sum_probs=254.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-CCCceEEEecCCCC-ccCcch----hHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-YPISSLYFHLSKPT-AAGYLD----QSI 150 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~~~~----~~~ 150 (488)
|||+++++.+ ..||+++++.+|+++|.++||+|+++|.......... .....+.+...... ....+. ...
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 76 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCA 76 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHH
Confidence 8999998743 5799999999999999999999999997543221111 11111222211100 001111 111
Q ss_pred HHHH----HHHHhcCCCCCcEEEeCCcchHHhhh---ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHH
Q 011355 151 VWQQ----LQTQNSTGKPFDVIHTESVGLRHTRA---RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERAS 223 (488)
Q Consensus 151 ~~~~----~~~~~~~~~~~Dvv~~~~~~~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
.+.. +........++|+||+++........ ...| ++.+.|...... ... ......++....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~----------~~~-~~~~~~~~~~~~ 144 (392)
T cd03805 77 YLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLFSPSK-ILFYCHFPDQLL----------AQR-GSLLKRLYRKPF 144 (392)
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHhcCCc-EEEEEecChHHh----------cCC-CcHHHHHHHHHH
Confidence 1111 11111222389999998744322221 1234 888888422110 011 111122332222
Q ss_pred HHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCC-CcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 224 KVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPE-ERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 224 ~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~-~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
+.. +...++.+|.++++|+..++.+.+.++... .++.+|+||+|.+.+.+..... .++....+++. ++++++||+
T Consensus 145 ~~~-e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~--~~~~~~~~~~~-~~i~~~grl 220 (392)
T cd03805 145 DWL-EEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP--DPGLLIPKSGK-KTFLSINRF 220 (392)
T ss_pred HHH-HHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc--cccccccCCCc-eEEEEEeee
Confidence 222 225678999999999999999988775433 3446999999988776543221 22333344444 889999999
Q ss_pred ccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch--------hHHh----h---hCCcEEEeCccCHHHHHHHHHh
Q 011355 303 VKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG--------ARYR----D---LGTNVIVLGPLDQTRLAMFYNA 367 (488)
Q Consensus 303 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~--------~~~~----~---l~~~V~~~g~v~~~~l~~~~~~ 367 (488)
.+.||++.+++|+.++.++... .++++|+++|+|+.. ++++ + +.++|.|+|+++.+++..+|+.
T Consensus 221 ~~~Kg~~~ll~a~~~l~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ 299 (392)
T cd03805 221 ERKKNIALAIEAFAILKDKLAE-FKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS 299 (392)
T ss_pred cccCChHHHHHHHHHHHhhccc-ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh
Confidence 9999999999999999875300 058999999987642 2222 2 3578999999999999999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVAR 447 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~ 447 (488)
||++++||. .|+||++++|||+||+|||+++.++.. |++.++.+|+++++|+++++++|.+++++ ++.+++|+++++
T Consensus 300 ad~~l~~s~-~E~~g~~~lEAma~G~PvI~s~~~~~~-e~i~~~~~g~~~~~~~~~~a~~i~~l~~~-~~~~~~~~~~a~ 376 (392)
T cd03805 300 ARALLYTPS-NEHFGIVPLEAMYAGKPVIACNSGGPL-ETVVDGETGFLCEPTPEEFAEAMLKLAND-PDLADRMGAAGR 376 (392)
T ss_pred CeEEEECCC-cCCCCchHHHHHHcCCCEEEECCCCcH-HHhccCCceEEeCCCHHHHHHHHHHHHhC-hHHHHHHHHHHH
Confidence 999999997 599999999999999999999999987 88999999999977999999999999999 889999999999
Q ss_pred HHHhhhCCHHHHHHHH
Q 011355 448 KRGLNLFTATKMAAAY 463 (488)
Q Consensus 448 ~~~~~~fs~~~~~~~~ 463 (488)
+++.++|+|+.+++++
T Consensus 377 ~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 377 KRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHhcCHHHHhhhC
Confidence 9999999999998763
No 18
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.2e-39 Score=329.64 Aligned_cols=366 Identities=16% Similarity=0.149 Sum_probs=254.8
Q ss_pred CCCCCCce-EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC--------------eEEEEecCC-CCC-CC-C---CC
Q 011355 70 SNPPLKLL-KIALFVKKWPHRSHAGGLERHALTLHLALAKRGH--------------ELHIFTASC-LNC-SF-P---TY 128 (488)
Q Consensus 70 ~~~~~~~m-kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--------------~V~v~~~~~-~~~-~~-~---~~ 128 (488)
..+|-++. ||+++.. +...||+|+++.+|+.+|.+.++ .|.+++... .+. .. . ..
T Consensus 274 ~~~~~~~~~rIl~vi~----sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~ 349 (694)
T PRK15179 274 DAGPESFVGPVLMING----SLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADA 349 (694)
T ss_pred cCCCCCCcceEEEEeC----CCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhC
Confidence 44555667 9999997 44789999999999999999854 344443321 111 11 1 13
Q ss_pred CCceEEEecCCCCccC-------cc---------hhHHHHHHHHHHhcCCCCCcEEEeCCcch-----HHhhhccCCcEE
Q 011355 129 PISSLYFHLSKPTAAG-------YL---------DQSIVWQQLQTQNSTGKPFDVIHTESVGL-----RHTRARNLTNVV 187 (488)
Q Consensus 129 ~~~~i~~~~~~~~~~~-------~~---------~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~-----~~~~~~~~p~~v 187 (488)
+++...+......... .+ ........+....+.. +|||||+|+... ......++|.++
T Consensus 350 Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~-kpDIVH~h~~~a~~lg~lAa~~~gvPvIv 428 (694)
T PRK15179 350 GIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSS-VPSVVHIWQDGSIFACALAALLAGVPRIV 428 (694)
T ss_pred CCeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHc-CCcEEEEeCCcHHHHHHHHHHHcCCCEEE
Confidence 3333333222100000 00 0111223333344444 899999997432 122223567334
Q ss_pred EeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCc
Q 011355 188 VSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGV 267 (488)
Q Consensus 188 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngv 267 (488)
.+.|+........ .+ ...+..+.+.. .....+.++++|+..++.+.+.+|++.+++.|||||+
T Consensus 429 ~t~h~~~~~~~~~------------~~-~~~~~~l~~~l----~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGV 491 (694)
T PRK15179 429 LSVRTMPPVDRPD------------RY-RVEYDIIYSEL----LKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGL 491 (694)
T ss_pred EEeCCCccccchh------------HH-HHHHHHHHHHH----HhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCc
Confidence 4667642211000 00 11111111111 1123467788888888888877899989999999999
Q ss_pred cCCCcCCCcccchhhhhh--hCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh
Q 011355 268 DEEVFKPDVAMGKDFKKK--FGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD 345 (488)
Q Consensus 268 d~~~~~~~~~~~~~~r~~--~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~ 345 (488)
|...|.+.+.... .+.. ...+.+. ++|+++||+.+.||++.+++|+.++.++. |+++|+|+|+|+..+.+++
T Consensus 492 d~~~f~~~~~~~~-~~~~~~~~~~~~~-~vIg~VGRL~~~KG~~~LI~A~a~l~~~~----p~~~LvIvG~G~~~~~L~~ 565 (694)
T PRK15179 492 APLKSVQDDACTA-MMAQFDARTSDAR-FTVGTVMRVDDNKRPFLWVEAAQRFAASH----PKVRFIMVGGGPLLESVRE 565 (694)
T ss_pred CHHhcCCCchhhH-HHHhhccccCCCC-eEEEEEEeCCccCCHHHHHHHHHHHHHHC----cCeEEEEEccCcchHHHHH
Confidence 9887754332211 1111 1233334 78999999999999999999999999888 8999999999987766654
Q ss_pred ------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC
Q 011355 346 ------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP 419 (488)
Q Consensus 346 ------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~ 419 (488)
+.++|+|+|+.+ ++..+|+.+|++|+||. .||||++++|||+||+|||+|+.+|.. |++.++.+|+++++
T Consensus 566 l~~~lgL~~~V~flG~~~--dv~~ll~aaDv~VlpS~-~Egfp~vlLEAMA~G~PVVat~~gG~~-EiV~dg~~GlLv~~ 641 (694)
T PRK15179 566 FAQRLGMGERILFTGLSR--RVGYWLTQFNAFLLLSR-FEGLPNVLIEAQFSGVPVVTTLAGGAG-EAVQEGVTGLTLPA 641 (694)
T ss_pred HHHHcCCCCcEEEcCCcc--hHHHHHHhcCEEEeccc-cccchHHHHHHHHcCCeEEEECCCChH-HHccCCCCEEEeCC
Confidence 348999999954 89999999999999997 599999999999999999999999998 99999999999987
Q ss_pred -C--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 420 -Q--VESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 420 -d--~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
| .++++++|.+++.+ ......+++++++++.++|||+.+++++.++|+
T Consensus 642 ~d~~~~~La~aL~~ll~~-l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 642 DTVTAPDVAEALARIHDM-CAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred CCCChHHHHHHHHHHHhC-hhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 5 46999999998887 555678889999999999999999999999994
No 19
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=8e-40 Score=324.53 Aligned_cols=381 Identities=18% Similarity=0.199 Sum_probs=266.0
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC---C------------CC-----------
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFP---T------------YP----------- 129 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~------------~~----------- 129 (488)
.|||+++++..-|-...||....+..|.++|+++||+|.|+.+........ . ..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 399999998776667999999999999999999999999999966433211 0 00
Q ss_pred -Cc--eEEEec-------CCCCccCc------c-hhHHHH----HHHHHHhc-CCCCCcEEEeCCcc---hHHhhh----
Q 011355 130 -IS--SLYFHL-------SKPTAAGY------L-DQSIVW----QQLQTQNS-TGKPFDVIHTESVG---LRHTRA---- 180 (488)
Q Consensus 130 -~~--~i~~~~-------~~~~~~~~------~-~~~~~~----~~~~~~~~-~~~~~Dvv~~~~~~---~~~~~~---- 180 (488)
.+ ++.+.. .++..++. + +....+ ........ ...+|||||+|++. ++.++.
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~ 164 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYA 164 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhh
Confidence 00 011100 11111111 0 111111 11111111 12279999999732 233232
Q ss_pred -----ccCCcEEEeeeCCcchhhhh-hhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHH--
Q 011355 181 -----RNLTNVVVSWHGIAYETIHS-DIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRI-- 252 (488)
Q Consensus 181 -----~~~p~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~-- 252 (488)
.++| ++.++|+..+..... ...... .+.... ..+........-....+..+|.|+++|+..++.+.+.
T Consensus 165 ~~~~~~~~~-~V~TiHn~~~qg~~~~~~~~~~--~~~~~~-~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~ 240 (489)
T PRK14098 165 DHEFFKDIK-TVLTIHNVYRQGVLPFKVFQKL--LPEEVC-SGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGE 240 (489)
T ss_pred hccccCCCC-EEEEcCCCcccCCCCHHHHHHh--CCHHhh-hhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCC
Confidence 1467 999999976532211 111110 010000 0000000000001134578999999999999988752
Q ss_pred --hcCC------CCcEEEecCCccCCCcCCCcc-----------------cchhhhhhhCCCCC-CcEEEEEEeeecccc
Q 011355 253 --YMIP------EERVHVILNGVDEEVFKPDVA-----------------MGKDFKKKFGIPEN-RSLVLGMAGRLVKDK 306 (488)
Q Consensus 253 --~g~~------~~~i~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~~-~~~~i~~~Grl~~~K 306 (488)
+|++ ..++.+|+||||.+.+.+... .+..+++++|++.+ +.++++++||+.++|
T Consensus 241 ~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~K 320 (489)
T PRK14098 241 EAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQ 320 (489)
T ss_pred CCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccC
Confidence 3443 679999999999998876432 13467788898743 337899999999999
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc--hhHHhh----hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW--GARYRD----LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQG 380 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~--~~~~~~----l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg 380 (488)
|++.+++|+..+.+ ++++|+|+|+|+. .+.+++ +.++|.|.|.++++++..+|+.||++++||. .|+
T Consensus 321 G~d~li~a~~~l~~------~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~-~E~ 393 (489)
T PRK14098 321 GAELLAESLEKLVE------LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGK-IES 393 (489)
T ss_pred cHHHHHHHHHHHHh------cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCC-CCC
Confidence 99999999999875 5799999999874 344444 4578999999999999999999999999997 599
Q ss_pred CChHHHHHHHcCCcEEEeCCCCcccceeec----CCceeEeCC-CHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHhh
Q 011355 381 LDHTVLEAMLSGKPLMATRLASIVGSVIVG----TDMGYLFSP-QVESVKKALYGIW---ADGREVLEKKGLVARKRGLN 452 (488)
Q Consensus 381 ~~~~~lEAma~G~PVI~~~~~~~~~e~v~~----~~~g~l~~~-d~~~la~~i~~ll---~~~~~~~~~~~~~a~~~~~~ 452 (488)
||++.+|||+||+|+|+++.||.. |.+.+ +.+|+++++ |+++++++|.+++ ++ ++.+.++++++ +.+
T Consensus 394 ~Gl~~lEAma~G~ppVv~~~GGl~-d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~-~~~~~~~~~~~---~~~ 468 (489)
T PRK14098 394 CGMLQMFAMSYGTIPVAYAGGGIV-ETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHD-EERWEELVLEA---MER 468 (489)
T ss_pred chHHHHHHHhCCCCeEEecCCCCc-eeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHHH---hcC
Confidence 999999999999999999999998 76654 679999999 9999999999865 45 77777777665 346
Q ss_pred hCCHHHHHHHHHHHHHHhhc
Q 011355 453 LFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 453 ~fs~~~~~~~~~~~~~~~~~ 472 (488)
+|||+.++++|.++|+++++
T Consensus 469 ~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 469 DFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred CCChHHHHHHHHHHHHHHhc
Confidence 79999999999999998864
No 20
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.6e-39 Score=333.72 Aligned_cols=389 Identities=16% Similarity=0.137 Sum_probs=268.1
Q ss_pred CCCCCceEEEEEecCC-C--------CCCCCCcHHHHHHHHHHHHHHCC--CeEEEEecCCCCCCC------C-------
Q 011355 71 NPPLKLLKIALFVKKW-P--------HRSHAGGLERHALTLHLALAKRG--HELHIFTASCLNCSF------P------- 126 (488)
Q Consensus 71 ~~~~~~mkIl~i~~~~-p--------~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~------~------- 126 (488)
....++|.|++|+.+- + -+...||...|+.+|+++|+++| |+|+++|........ .
T Consensus 164 ~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~ 243 (1050)
T TIGR02468 164 QQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPR 243 (1050)
T ss_pred hcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccc
Confidence 3345789999998532 2 13467899999999999999998 899999987643210 0
Q ss_pred -----------CCCCceEEEecCCCC-cc---CcchhHHHH-HHHHHHhc-------------CCCCCcEEEeCCcc---
Q 011355 127 -----------TYPISSLYFHLSKPT-AA---GYLDQSIVW-QQLQTQNS-------------TGKPFDVIHTESVG--- 174 (488)
Q Consensus 127 -----------~~~~~~i~~~~~~~~-~~---~~~~~~~~~-~~~~~~~~-------------~~~~~Dvv~~~~~~--- 174 (488)
..+...++++..... .. ..|.+...+ ..+..... ....||+||.|...
T Consensus 244 ~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~ 323 (1050)
T TIGR02468 244 SSENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGD 323 (1050)
T ss_pred ccccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHH
Confidence 012233344433221 00 112111111 11111110 11149999999632
Q ss_pred --hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCC--ChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHH
Q 011355 175 --LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPE--EPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLK 250 (488)
Q Consensus 175 --~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~ 250 (488)
.......++| ++.+.|....... ..+..... .......+....+...+...+..||.||+.|....+.+.
T Consensus 324 aa~~L~~~lgVP-~V~T~HSLgr~K~-----~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~ 397 (1050)
T TIGR02468 324 SAALLSGALNVP-MVLTGHSLGRDKL-----EQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQW 397 (1050)
T ss_pred HHHHHHHhhCCC-EEEECccchhhhh-----hhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHH
Confidence 2222334679 9999997531110 00000000 000001112222333344678999999999999998766
Q ss_pred HHhc-CC---------------------CCcEEEecCCccCCCcCCCcccc-------------------hhhhhhhCCC
Q 011355 251 RIYM-IP---------------------EERVHVILNGVDEEVFKPDVAMG-------------------KDFKKKFGIP 289 (488)
Q Consensus 251 ~~~g-~~---------------------~~~i~vi~ngvd~~~~~~~~~~~-------------------~~~r~~~~i~ 289 (488)
..|+ .+ ..++.|||||+|++.|.+..... ..++. +..+
T Consensus 398 ~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r-~~~~ 476 (1050)
T TIGR02468 398 GLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMR-FFTN 476 (1050)
T ss_pred HHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHh-hccc
Confidence 6553 22 34899999999999887642111 12222 2334
Q ss_pred CCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhH-----------Hhh------hCCcEEE
Q 011355 290 ENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGAR-----------YRD------LGTNVIV 352 (488)
Q Consensus 290 ~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~-----------~~~------l~~~V~~ 352 (488)
+++ ++|+++||+.+.||++.||+|+..+.+.... +++. +|+|.++..+. +++ +.++|.|
T Consensus 477 pdk-pvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~--~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~F 552 (1050)
T TIGR02468 477 PRK-PMILALARPDPKKNITTLVKAFGECRPLREL--ANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAY 552 (1050)
T ss_pred CCC-cEEEEEcCCccccCHHHHHHHHHHhHhhccC--CCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEe
Confidence 555 6788999999999999999999998753200 4665 46787653221 221 4588999
Q ss_pred eCccCHHHHHHHHHhc----CEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHH
Q 011355 353 LGPLDQTRLAMFYNAI----DIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKA 427 (488)
Q Consensus 353 ~g~v~~~~l~~~~~~a----dv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~ 427 (488)
+|+++++++..+|+.| |+||+||.. |+||++++||||||+|||+|+.||.. |++.++.+|+++++ |+++|+++
T Consensus 553 lG~v~~edvp~lYr~Ad~s~DVFV~PS~~-EgFGLvlLEAMAcGlPVVASdvGG~~-EII~~g~nGlLVdP~D~eaLA~A 630 (1050)
T TIGR02468 553 PKHHKQSDVPDIYRLAAKTKGVFINPAFI-EPFGLTLIEAAAHGLPMVATKNGGPV-DIHRVLDNGLLVDPHDQQAIADA 630 (1050)
T ss_pred cCCCCHHHHHHHHHHhhhcCCeeeCCccc-CCCCHHHHHHHHhCCCEEEeCCCCcH-HHhccCCcEEEECCCCHHHHHHH
Confidence 9999999999999988 699999974 99999999999999999999999998 89999999999999 99999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhccc
Q 011355 428 LYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISNDE 474 (488)
Q Consensus 428 i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 474 (488)
|.+++++ ++.+++|++++++.+. +|+|+.++++|.+.+..+...+
T Consensus 631 L~~LL~D-pelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 631 LLKLVAD-KQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHhhC-HHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhccC
Confidence 9999999 9999999999999985 5999999999999999887654
No 21
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.2e-39 Score=316.62 Aligned_cols=358 Identities=17% Similarity=0.150 Sum_probs=240.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCCCcc--------Ccc
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKPTAA--------GYL 146 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~--------~~~ 146 (488)
|||+.|.. ....||+|+.+.+|++.|.++||+|.++........... ...........+.... ...
T Consensus 1 mkil~i~~----~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (405)
T PRK10125 1 MNILQFNV----RLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNR 76 (405)
T ss_pred CeEEEEEe----eecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcch
Confidence 89999987 347899999999999999999999999998765444322 1111111111110000 000
Q ss_pred hhHHHHHHHHHHhcCCCCCcEEEeCCcc-----hHH---------hhhccCCcEEEeeeCCcchhhhhhhhHhhhc----
Q 011355 147 DQSIVWQQLQTQNSTGKPFDVIHTESVG-----LRH---------TRARNLTNVVVSWHGIAYETIHSDIIQELLR---- 208 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~Dvv~~~~~~-----~~~---------~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~---- 208 (488)
..........+......+|||||+|... +.. ....++| +++++|+.+..+.+..+.....+
T Consensus 77 ~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~p-iV~TlHd~~~~tg~c~~~~~C~~~~~~ 155 (405)
T PRK10125 77 DLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVT-LVWTLHDHWSVTGRCAFTDGCEGWKTG 155 (405)
T ss_pred hhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCC-EEEecccccccCCCcCCCccccccccc
Confidence 0011122222222112289999999632 221 1122457 99999999976533332111111
Q ss_pred ---------CCCCh--hHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcc
Q 011355 209 ---------TPEEP--QAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVA 277 (488)
Q Consensus 209 ---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~ 277 (488)
+|... ........-.+... ..++.++.+|++|++.++.+.+.++ ..++.+||||+|.+.+...+.
T Consensus 156 c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~--~~~~~~~~iV~~S~~l~~~~~~~~~--~~~i~vI~NGid~~~~~~~~~ 231 (405)
T PRK10125 156 CQKCPTLNNYPPVKVDRAHQLVAGKRQLFR--EMLALGCQFISPSQHVADAFNSLYG--PGRCRIINNGIDMATEAILAE 231 (405)
T ss_pred CCCCCCccCCCCCccchHHHHHHHHHHHHH--HHhhcCcEEEEcCHHHHHHHHHHcC--CCCEEEeCCCcCccccccccc
Confidence 11111 11122211111211 3345678999999999999887655 578999999999743222111
Q ss_pred cchhhhhhhCCCCCCcEEEEEEeee--ccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCc
Q 011355 278 MGKDFKKKFGIPENRSLVLGMAGRL--VKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGP 355 (488)
Q Consensus 278 ~~~~~r~~~~i~~~~~~~i~~~Grl--~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~ 355 (488)
. ...+ .++++ .+++++|+. .+.||++.+++|+..+. ++++|+++|+|+... .++|.++|+
T Consensus 232 ~-~~~~----~~~~~-~~il~v~~~~~~~~Kg~~~li~A~~~l~-------~~~~L~ivG~g~~~~-----~~~v~~~g~ 293 (405)
T PRK10125 232 L-PPVR----ETQGK-PKIAVVAHDLRYDGKTDQQLVREMMALG-------DKIELHTFGKFSPFT-----AGNVVNHGF 293 (405)
T ss_pred c-cccc----cCCCC-CEEEEEEeccccCCccHHHHHHHHHhCC-------CCeEEEEEcCCCccc-----ccceEEecC
Confidence 0 0011 12333 678899984 47899999999998863 679999999875422 357899997
Q ss_pred c-CHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 356 L-DQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 356 v-~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
. +.+++.++|++||+||+||. .||||++++||||||+|||+|++||++ |++.+ .+|+++++ |+++|++.+.
T Consensus 294 ~~~~~~l~~~y~~aDvfV~pS~-~Egfp~vilEAmA~G~PVVat~~gG~~-Eiv~~-~~G~lv~~~d~~~La~~~~---- 366 (405)
T PRK10125 294 ETDKRKLMSALNQMDALVFSSR-VDNYPLILCEALSIGVPVIATHSDAAR-EVLQK-SGGKTVSEEEVLQLAQLSK---- 366 (405)
T ss_pred cCCHHHHHHHHHhCCEEEECCc-cccCcCHHHHHHHcCCCEEEeCCCChH-HhEeC-CcEEEECCCCHHHHHhccC----
Confidence 6 56899999999999999998 599999999999999999999999998 77766 49999999 9999998543
Q ss_pred cCHHHHHH----HHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Q 011355 434 DGREVLEK----KGLVARKRGLNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 434 ~~~~~~~~----~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 470 (488)
++..++ +.+++++.+.++||++.++++|.++|+++
T Consensus 367 --~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 367 --PEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred --HHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 333222 23568888889999999999999999763
No 22
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=8.6e-39 Score=308.20 Aligned_cols=359 Identities=13% Similarity=0.170 Sum_probs=252.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHH----HHHCCC--------eEEEEecCCCCCCCCC--------CCCceEEEec
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLA----LAKRGH--------ELHIFTASCLNCSFPT--------YPISSLYFHL 137 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~----L~~~G~--------~V~v~~~~~~~~~~~~--------~~~~~i~~~~ 137 (488)
.+++++. +...||+|+.+.+++-+ .++.|- .|.+++..-....... ..++...+..
T Consensus 163 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (578)
T PRK15490 163 RLALCTG----SLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAK 238 (578)
T ss_pred ceEEEec----CCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeec
Confidence 4889987 45789999999955544 444443 6788877644333222 3333333322
Q ss_pred CCCCccCc----------------chhHHHHHHHHHHhcCCCCCcEEEeCCcch--H---HhhhccCCcEEEeeeCCcch
Q 011355 138 SKPTAAGY----------------LDQSIVWQQLQTQNSTGKPFDVIHTESVGL--R---HTRARNLTNVVVSWHGIAYE 196 (488)
Q Consensus 138 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~--~---~~~~~~~p~~v~~~h~~~~~ 196 (488)
.....+.. ......+..+....+.. +||+||+|.... . ..+..+.|.++.+.|+.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~-rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~~ 317 (578)
T PRK15490 239 ITGNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCER-KLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPPV 317 (578)
T ss_pred cchhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHc-CCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCCc
Confidence 21100000 01112233334444444 899999996432 1 12223567345566762111
Q ss_pred hhhhhhhHhhhcCCCChhHHHHHHHHHHHHHH-hhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCC
Q 011355 197 TIHSDIIQELLRTPEEPQAYALAERASKVVEE-VKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPD 275 (488)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~ 275 (488)
. . ......-.....+ ......+| +++.|...++.+.+.++++++++.+||||+|...|.+.
T Consensus 318 ~----------------~-~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~ 379 (578)
T PRK15490 318 V----------------R-KRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPS 379 (578)
T ss_pred c----------------h-hhHHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCcc
Confidence 0 0 1111000011111 01234445 78889999999988889999999999999999887765
Q ss_pred cccchhhhhh--hCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hC
Q 011355 276 VAMGKDFKKK--FGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LG 347 (488)
Q Consensus 276 ~~~~~~~r~~--~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~ 347 (488)
.......++. .+++++. ++++++||+.+.||+..+++++.++.++. |+++|+|+|+|+..+.+++ +.
T Consensus 380 ~~~~~~~r~~~~~~l~~~~-~vIg~VgRl~~~Kg~~~LI~A~a~llk~~----pdirLvIVGdG~~~eeLk~la~elgL~ 454 (578)
T PRK15490 380 SEVPHKIWQQFTQKTQDAD-TTIGGVFRFVGDKNPFAWIDFAARYLQHH----PATRFVLVGDGDLRAEAQKRAEQLGIL 454 (578)
T ss_pred chhhHHHHHHhhhccCCCC-cEEEEEEEEehhcCHHHHHHHHHHHHhHC----CCeEEEEEeCchhHHHHHHHHHHcCCC
Confidence 4322233332 3444455 78899999999999999999999998888 8999999999988766654 34
Q ss_pred CcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHH
Q 011355 348 TNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKK 426 (488)
Q Consensus 348 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~ 426 (488)
++|+|+|+ .+++..+|+.+|++|+||. .||||++++|||+||+|||+++.||.+ |++.++.+|+++++ |++++++
T Consensus 455 d~V~FlG~--~~Dv~~~LaaADVfVlPS~-~EGfp~vlLEAMA~GlPVVATdvGG~~-EiV~dG~nG~LVp~~D~~aLa~ 530 (578)
T PRK15490 455 ERILFVGA--SRDVGYWLQKMNVFILFSR-YEGLPNVLIEAQMVGVPVISTPAGGSA-ECFIEGVSGFILDDAQTVNLDQ 530 (578)
T ss_pred CcEEECCC--hhhHHHHHHhCCEEEEccc-ccCccHHHHHHHHhCCCEEEeCCCCcH-HHcccCCcEEEECCCChhhHHH
Confidence 88999999 5699999999999999997 599999999999999999999999998 99999999999999 8888888
Q ss_pred HH---HHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 427 AL---YGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 427 ~i---~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
++ ..+.++ .+....|++++++++.++|||+.++++|.++|..
T Consensus 531 ai~lA~aL~~l-l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 531 ACRYAEKLVNL-WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 76 444554 5556679999999999999999999999999964
No 23
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=1.1e-38 Score=310.56 Aligned_cols=344 Identities=24% Similarity=0.302 Sum_probs=262.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
|||++++.. ...||+++++..++++|.++||+|++++.... .+.
T Consensus 1 MkIl~~~~~----~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~--------------------------------~~~ 44 (365)
T cd03825 1 MKVLHLNTS----DISGGAARAAYRLHRALQAAGVDSTMLVQEKK--------------------------------ALI 44 (365)
T ss_pred CeEEEEecC----CCCCcHHHHHHHHHHHHHhcCCceeEEEeecc--------------------------------hhh
Confidence 899999863 36699999999999999999999999997653 111
Q ss_pred HHhcCCCCCcEEEeCCcc-----hHHhhh--ccCCcEEEeeeCCcchhhhhhhhHhhhcC-------CCChhHH--HHHH
Q 011355 157 TQNSTGKPFDVIHTESVG-----LRHTRA--RNLTNVVVSWHGIAYETIHSDIIQELLRT-------PEEPQAY--ALAE 220 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~-----~~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~ 220 (488)
...... +||+||+|... ...+.. .++| .++++|+.+....+.........+ +...... .+..
T Consensus 45 ~~~~~~-~~diih~~~~~~~~~~~~~~~~~~~~~~-~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (365)
T cd03825 45 SKIEII-NADIVHLHWIHGGFLSIEDLSKLLDRKP-VVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSR 122 (365)
T ss_pred hChhcc-cCCEEEEEccccCccCHHHHHHHHcCCC-EEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHH
Confidence 111122 89999998621 112222 2667 999999876543221111000000 0000000 0111
Q ss_pred HHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEe
Q 011355 221 RASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAG 300 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 300 (488)
...+.... ......+.++++|++..+.+.+.++++..++.++|||+|.+.+.+.. ....++.+++++++ .++++.|
T Consensus 123 ~~~~~~~~-~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~--~~~~~~~~~~~~~~-~~i~~~~ 198 (365)
T cd03825 123 WIWRRKRK-AWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRD--KREARKRLGLPADK-KIILFGA 198 (365)
T ss_pred HHHHHHHH-HhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCc--HHHHHHHhCCCCCC-eEEEEEe
Confidence 11111110 12267788999999999999886667888999999999998775433 35677888888776 6666667
Q ss_pred eecc--ccChHHHHHHHHHhHhh-ccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccC-HHHHHHHHHhcCEEEeCCC
Q 011355 301 RLVK--DKGHPLMFEALKQLLAE-NDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLD-QTRLAMFYNAIDIFVNPTL 376 (488)
Q Consensus 301 rl~~--~Kg~~~ll~a~~~l~~~-~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~-~~~l~~~~~~adv~v~ps~ 376 (488)
+... .||++.+++++..+.++ . ++++++++|+++..... .+..+|.++|+++ ++++..+|+.||++++||.
T Consensus 199 ~~~~~~~K~~~~ll~a~~~l~~~~~----~~~~~~i~G~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~ 273 (365)
T cd03825 199 VGGTDPRKGFDELIEALKRLAERWK----DDIELVVFGASDPEIPP-DLPFPVHYLGSLNDDESLALIYSAADVFVVPSL 273 (365)
T ss_pred cCCCccccCHHHHHHHHHHhhhccC----CCeEEEEeCCCchhhhc-cCCCceEecCCcCCHHHHHHHHHhCCEEEeccc
Confidence 6654 89999999999999876 4 78999999988755432 4567899999998 8899999999999999997
Q ss_pred CCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCC
Q 011355 377 RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFT 455 (488)
Q Consensus 377 ~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs 455 (488)
.||+|++++|||++|+|||+++.++.. |++.++.+|+++++ |++++++++.+++++ ++.+.++++++++.+.++||
T Consensus 274 -~e~~g~~~~Eam~~g~PvI~~~~~~~~-e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~s 350 (365)
T cd03825 274 -QENFPNTAIEALACGTPVVAFDVGGIP-DIVDHGVTGYLAKPGDPEDLAEGIEWLLAD-PDEREELGEAARELAENEFD 350 (365)
T ss_pred -cccccHHHHHHHhcCCCEEEecCCCCh-hheeCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcC
Confidence 599999999999999999999999998 88888889999998 999999999999998 88999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011355 456 ATKMAAAYERLFLCI 470 (488)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (488)
|++++++|.++|+++
T Consensus 351 ~~~~~~~~~~~y~~~ 365 (365)
T cd03825 351 SRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999863
No 24
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=1.7e-38 Score=320.31 Aligned_cols=377 Identities=16% Similarity=0.175 Sum_probs=253.3
Q ss_pred CCceEEEEEecCC----CC---CCCCCcHHHHHHHHHHHH--------HHCCC----eEEEEecCCCCCCCC--------
Q 011355 74 LKLLKIALFVKKW----PH---RSHAGGLERHALTLHLAL--------AKRGH----ELHIFTASCLNCSFP-------- 126 (488)
Q Consensus 74 ~~~mkIl~i~~~~----p~---~~~~gG~~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~~-------- 126 (488)
|+.|||++++.+. ++ .+..||...|+.+++++| +++|| +|+|+|...++....
T Consensus 253 p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~ 332 (784)
T TIGR02470 253 PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK 332 (784)
T ss_pred CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc
Confidence 4569999999876 31 123699999999999985 68899 777999876533211
Q ss_pred CCCCceEE---EecCCCCc---cC------cchhHHHH-HHHHH-HhcC-CCCCcEEEeCCcc--hH---HhhhccCCcE
Q 011355 127 TYPISSLY---FHLSKPTA---AG------YLDQSIVW-QQLQT-QNST-GKPFDVIHTESVG--LR---HTRARNLTNV 186 (488)
Q Consensus 127 ~~~~~~i~---~~~~~~~~---~~------~~~~~~~~-~~~~~-~~~~-~~~~Dvv~~~~~~--~~---~~~~~~~p~~ 186 (488)
....+++. ++...... .. .|.+...+ ..+.. .... ..+||+||+|.+. +. .....++| .
T Consensus 333 ~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP-~ 411 (784)
T TIGR02470 333 VYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVT-Q 411 (784)
T ss_pred ccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCC-E
Confidence 12223333 33222110 01 11111111 11111 1111 1279999999632 22 22234678 8
Q ss_pred EEeeeCCcchhhh-hhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHH----HHHH----------
Q 011355 187 VVSWHGIAYETIH-SDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGD----VLKR---------- 251 (488)
Q Consensus 187 v~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~----~~~~---------- 251 (488)
+.+.|........ .+. .... . ...+....++..+...++.||.||+.|..... .+.+
T Consensus 412 v~t~HsL~~~K~~~~g~-----~~~~--~-e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p 483 (784)
T TIGR02470 412 CTIAHALEKTKYPDSDI-----YWQE--F-EDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMP 483 (784)
T ss_pred EEECCcchhhccccccc-----cccc--c-hhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhccccccc
Confidence 8999976322110 000 0000 0 11112222333344678999999999965422 2221
Q ss_pred -Hh----cC--CCCcEEEecCCccCCCcCCCcccc-----------------hhhhhhhCC--CCCCcEEEEEEeeeccc
Q 011355 252 -IY----MI--PEERVHVILNGVDEEVFKPDVAMG-----------------KDFKKKFGI--PENRSLVLGMAGRLVKD 305 (488)
Q Consensus 252 -~~----g~--~~~~i~vi~ngvd~~~~~~~~~~~-----------------~~~r~~~~i--~~~~~~~i~~~Grl~~~ 305 (488)
.| |+ +..|+.|||+|+|...|.+..... ...++.+|+ ++++ ++|+++||+.+.
T Consensus 484 ~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~k-piIl~VGRL~~~ 562 (784)
T TIGR02470 484 GLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNK-PIIFSMARLDRV 562 (784)
T ss_pred ceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCC-cEEEEEeCCCcc
Confidence 12 22 557999999999998776533211 122466775 3444 678899999999
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc------hh---H---Hhh------hCCcEEEeCcc-CHHHHHHHHH
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW------GA---R---YRD------LGTNVIVLGPL-DQTRLAMFYN 366 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~------~~---~---~~~------l~~~V~~~g~v-~~~~l~~~~~ 366 (488)
||++.+++|+.++.... ++++|+|+|+++. .+ + +.+ +.++|.|+|.. +..++.++|.
T Consensus 563 KGid~LIeA~~~l~~l~----~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr 638 (784)
T TIGR02470 563 KNLTGLVECYGRSPKLR----ELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYR 638 (784)
T ss_pred CCHHHHHHHHHHhHhhC----CCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHH
Confidence 99999999998876544 6799999997642 11 1 111 34799999975 5556666664
Q ss_pred ----hcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHH----hcCHH
Q 011355 367 ----AIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIW----ADGRE 437 (488)
Q Consensus 367 ----~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll----~~~~~ 437 (488)
.+|+||+||. .|+||++++|||+||+|||+|+.||.. |+|.++.+|+++++ |+++++++|.+++ .| ++
T Consensus 639 ~iAd~adVfV~PS~-~EpFGLvvLEAMAcGlPVVAT~~GG~~-EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~d-p~ 715 (784)
T TIGR02470 639 YIADTKGIFVQPAL-YEAFGLTVLEAMTCGLPTFATRFGGPL-EIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDED-PS 715 (784)
T ss_pred HhhccCcEEEECCc-ccCCCHHHHHHHHcCCCEEEcCCCCHH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC-HH
Confidence 3579999997 599999999999999999999999998 99999999999999 9999999999886 46 99
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 011355 438 VLEKKGLVARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 438 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
.+++|++++++++.++|||+.+++++.++.
T Consensus 716 ~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 716 YWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999998775
No 25
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=5e-39 Score=312.86 Aligned_cols=347 Identities=16% Similarity=0.131 Sum_probs=248.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHH----H
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVW----Q 153 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~ 153 (488)
||++++..+ ..||+++++.++++.|.+.||+|++++............ .+..................+ .
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTK--KFHNALQGADIELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHH--HhhHhhcCCCCCCCHHHHHHHHHHHH
Confidence 688998754 569999999999999999999999998765332111000 000000000000001111111 1
Q ss_pred HHHHHhcCCCCCcEEEeCCcch---HHhhhc-cCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHh
Q 011355 154 QLQTQNSTGKPFDVIHTESVGL---RHTRAR-NLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEV 229 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~~~~~---~~~~~~-~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
..........+||+||+|+... ...... +.| ++.+.|...... . ......+.
T Consensus 75 ~~~~~~~~~~~~Dvv~~h~~~~~~~~~~~~~~~~~-~i~~~H~~~~~~-------------~----~~~~~~~~------ 130 (372)
T cd03792 75 ENAERPLLDLDADVVVIHDPQPLALPLFKKKRGRP-WIWRCHIDLSSP-------------N----RRVWDFLQ------ 130 (372)
T ss_pred HHhccccccCCCCEEEECCCCchhHHHhhhcCCCe-EEEEeeeecCCC-------------c----HHHHHHHH------
Confidence 1111011122899999997542 222222 556 888888642110 0 11111111
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCc---CCCcccchhhhhhhCCCCCCcEEEEEEeeecccc
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVF---KPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDK 306 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~---~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~K 306 (488)
+.++++|.+++.|.. .. . .+++..++ ++|||+|.... ...+......++++++++++ ++++++||+.+.|
T Consensus 131 ~~~~~~d~~i~~~~~---~~-~-~~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~vgrl~~~K 203 (372)
T cd03792 131 PYIEDYDAAVFHLPE---YV-P-PQVPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGIDPER-PYITQVSRFDPWK 203 (372)
T ss_pred HHHHhCCEEeecHHH---hc-C-CCCCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCC-cEEEEEecccccc
Confidence 345678998888832 22 2 24555555 99999997531 11222345678889988777 7889999999999
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch--------hHHh---hhCCcEEEeCcc--CHHHHHHHHHhcCEEEe
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG--------ARYR---DLGTNVIVLGPL--DQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~--------~~~~---~l~~~V~~~g~v--~~~~l~~~~~~adv~v~ 373 (488)
|++.+++|++.+.++. ++++|+++|+|+.. +.+. .+.++|.|+|.. +.+++..+|+.||++++
T Consensus 204 g~~~ll~a~~~l~~~~----~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~ 279 (372)
T cd03792 204 DPFGVIDAYRKVKERV----PDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQ 279 (372)
T ss_pred CcHHHHHHHHHHHhhC----CCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEe
Confidence 9999999999998887 89999999998642 1111 134689999976 88999999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 011355 374 PTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNL 453 (488)
Q Consensus 374 ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~ 453 (488)
||. .||||++++|||+||+|||+++.++.. +++.++.+|++++ +.++++++|.+++++ ++.+++|++++++.+.++
T Consensus 280 ~s~-~Eg~g~~~lEA~a~G~Pvv~s~~~~~~-~~i~~~~~g~~~~-~~~~~a~~i~~ll~~-~~~~~~~~~~a~~~~~~~ 355 (372)
T cd03792 280 KSI-REGFGLTVTEALWKGKPVIAGPVGGIP-LQIEDGETGFLVD-TVEEAAVRILYLLRD-PELRRKMGANAREHVREN 355 (372)
T ss_pred CCC-ccCCCHHHHHHHHcCCCEEEcCCCCch-hhcccCCceEEeC-CcHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHH
Confidence 997 599999999999999999999999988 8889999999988 778899999999998 899999999999999889
Q ss_pred CCHHHHHHHHHHHHHH
Q 011355 454 FTATKMAAAYERLFLC 469 (488)
Q Consensus 454 fs~~~~~~~~~~~~~~ 469 (488)
|+|+.+++++.++|++
T Consensus 356 ~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 356 FLITRHLKDYLYLISK 371 (372)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999976
No 26
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=3.4e-39 Score=312.86 Aligned_cols=328 Identities=23% Similarity=0.307 Sum_probs=248.4
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-CCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEEE
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-YPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVIH 169 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~ 169 (488)
..||+++++.+++++|.++||+|++++.......... .+...+.+..... ..+........+.....+. +||+||
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~-~~dii~ 83 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPFISK---NPLRILLNVARLRRLIREE-KVDIVH 83 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEcccccc---chhhhHHHHHHHHHHHHHc-CCCEEE
Confidence 5699999999999999999999999987532211111 1222222221111 1222222223333333333 899999
Q ss_pred eCCcch-----HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChh
Q 011355 170 TESVGL-----RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDH 244 (488)
Q Consensus 170 ~~~~~~-----~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~ 244 (488)
+|+... ......++| ++.++|+..... .+.. ..+.++|.++++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~-------------------~~~~---------~~~~~~~~vi~~s~~ 134 (355)
T cd03819 84 ARSRAPAWSAYLAARRTRPP-FVTTVHGFYSVN-------------------FRYN---------AIMARGDRVIAVSNF 134 (355)
T ss_pred ECCCchhHHHHHHHHhcCCC-EEEEeCCchhhH-------------------HHHH---------HHHHhcCEEEEeCHH
Confidence 997321 112223567 899999853211 0111 234678999999999
Q ss_pred hHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccc---hhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhh
Q 011355 245 CGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMG---KDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAE 321 (488)
Q Consensus 245 ~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~---~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~ 321 (488)
..+.+.+.++++..++.++|||+|...+.+..... ..++++++++++. ++++++||+.+.||++.+++++..+.++
T Consensus 135 ~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~Gr~~~~Kg~~~li~~~~~l~~~ 213 (355)
T cd03819 135 IADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGK-PVILLPGRLTRWKGQEVFIEALARLKKD 213 (355)
T ss_pred HHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCc-eEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 99999977899889999999999998776543221 1256777776666 8899999999999999999999999988
Q ss_pred ccCCCCCeEEEEEeCCCchhHH--------h--hhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHc
Q 011355 322 NDTFRRSTVFLVAGDGPWGARY--------R--DLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLS 391 (488)
Q Consensus 322 ~~~~~~~~~l~ivG~g~~~~~~--------~--~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~ 391 (488)
. ++++++++|+++..+.+ + .+.++|.|+|+ .+++.++|+.||++++||.+.||+|++++|||++
T Consensus 214 ~----~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~ 287 (355)
T cd03819 214 D----PDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAM 287 (355)
T ss_pred C----CCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhc
Confidence 7 89999999988654333 1 23478999999 6699999999999999995469999999999999
Q ss_pred CCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHH
Q 011355 392 GKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKM 459 (488)
Q Consensus 392 G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~ 459 (488)
|+|||+++.++.. |++.++.+|+++++ |+++++++|..++..+++.+.+++++|++.+.++|+|+.+
T Consensus 288 G~PvI~~~~~~~~-e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 288 GRPVIASDHGGAR-ETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred CCCEEEcCCCCcH-HHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 9999999999987 89999889999998 9999999997666644999999999999999999999864
No 27
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=2.3e-38 Score=307.61 Aligned_cols=345 Identities=22% Similarity=0.293 Sum_probs=258.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceE-EEecCCCCccCcchhHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSL-YFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
||+++++.+ ..||+++.+.+++++|.++||+|++++................ ...... ........+..+.
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 72 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATIILNLNMSK----NPLSFLLALWKLR 72 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccceEEecccc----cchhhHHHHHHHH
Confidence 578887643 6799999999999999999999999987653322211111111 111111 1122222223333
Q ss_pred HHhcCCCCCcEEEeCCcchH--H----hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 011355 157 TQNSTGKPFDVIHTESVGLR--H----TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVK 230 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~~--~----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (488)
+..+.. +||+||+|..... . ......+ ++.+.|+.... ........+.
T Consensus 73 ~~~~~~-~pdiv~~~~~~~~~~~~l~~~~~~~~~-~v~~~h~~~~~-------------------~~~~~~~~~~----- 126 (360)
T cd04951 73 KILRQF-KPDVVHAHMFHANIFARLLRLFLPSPP-LICTAHSKNEG-------------------GRLRMLAYRL----- 126 (360)
T ss_pred HHHHhc-CCCEEEEcccchHHHHHHHHhhCCCCc-EEEEeeccCch-------------------hHHHHHHHHH-----
Confidence 333333 8999999974321 1 1112334 88888874211 1111111111
Q ss_pred hcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHH
Q 011355 231 FFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPL 310 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ 310 (488)
....++.++++|+...+.+.+..+++.+++.++|||+|...+.+.......+++++++++++ ++++++|++.+.||++.
T Consensus 127 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~kg~~~ 205 (360)
T cd04951 127 TDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDT-FVILAVGRLVEAKDYPN 205 (360)
T ss_pred HhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCC-EEEEEEeeCchhcCcHH
Confidence 12346777889999999998865677889999999999888776555556788888887776 88999999999999999
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
+++++.++.++. ++++|+|+|+|+..+.+++ +.++|.++|+. +++.++|+.||++++||.. ||+|++
T Consensus 206 li~a~~~l~~~~----~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~-e~~~~~ 278 (360)
T cd04951 206 LLKAFAKLLSDY----LDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAW-EGFGLV 278 (360)
T ss_pred HHHHHHHHHhhC----CCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccc-cCCChH
Confidence 999999998888 8999999999987765544 34789999985 5899999999999999975 999999
Q ss_pred HHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 385 VLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
++|||++|+|||+++.++.. |++.+ +|+++++ |+++++++|.++++++++.+..++++ ++.+.++|||+.++++|
T Consensus 279 ~~Ea~a~G~PvI~~~~~~~~-e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~ 354 (360)
T cd04951 279 VAEAMACELPVVATDAGGVR-EVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQW 354 (360)
T ss_pred HHHHHHcCCCEEEecCCChh-hEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHH
Confidence 99999999999999999988 77765 7888888 99999999999996647777777766 88888999999999999
Q ss_pred HHHHH
Q 011355 464 ERLFL 468 (488)
Q Consensus 464 ~~~~~ 468 (488)
.++|+
T Consensus 355 ~~~y~ 359 (360)
T cd04951 355 LTLYT 359 (360)
T ss_pred HHHhh
Confidence 99996
No 28
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.5e-38 Score=313.34 Aligned_cols=352 Identities=22% Similarity=0.246 Sum_probs=256.1
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC-CCCCceEEEecCCCC--cc----Ccchh-HHHHHHHHHHhcCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCLNCSFP-TYPISSLYFHLSKPT--AA----GYLDQ-SIVWQQLQTQNSTG 162 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~----~~~~~-~~~~~~~~~~~~~~ 162 (488)
..||+++++.+|+++|++.||+|+|++......... .....++.+...... .. ..+.. ......+.......
T Consensus 19 ~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (398)
T cd03800 19 DTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRRE 98 (398)
T ss_pred CCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999765433221 112223333221110 00 01111 11122222222221
Q ss_pred -CCCcEEEeCCcc--h---HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCcc
Q 011355 163 -KPFDVIHTESVG--L---RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYA 236 (488)
Q Consensus 163 -~~~Dvv~~~~~~--~---~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 236 (488)
.+||+||+|... . ......++| ++.+.|+.......... .. ...........+...++.+|
T Consensus 99 ~~~~Div~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~ad 165 (398)
T cd03800 99 GGRPDLIHAHYWDSGLVALLLARRLGIP-LVHTFHSLGAVKRRHLG-------AA-----DTYEPARRIEAEERLLRAAD 165 (398)
T ss_pred CCCccEEEEecCccchHHHHHHhhcCCc-eEEEeecccccCCcccc-------cc-----cccchhhhhhHHHHHHhhCC
Confidence 279999998632 1 112223556 88899975432110000 00 00000111122235678999
Q ss_pred EEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHH
Q 011355 237 HHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALK 316 (488)
Q Consensus 237 ~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~ 316 (488)
.++++|+...+.+.+.++.+..++.+|+||+|.+.+.+.... ...++.++.+.++ ++++++||+.+.||++.+++++.
T Consensus 166 ~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~-~~~~~~~~~~~~~-~~i~~~gr~~~~k~~~~ll~a~~ 243 (398)
T cd03800 166 RVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRA-EARRARLLRDPDK-PRILAVGRLDPRKGIDTLIRAYA 243 (398)
T ss_pred EEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccch-hhHHHhhccCCCC-cEEEEEcccccccCHHHHHHHHH
Confidence 999999999999998776666779999999998877654332 2225556666555 88999999999999999999999
Q ss_pred HhHhhccCCCCCeEEEEEeCCCchh------H----Hh--hhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 317 QLLAENDTFRRSTVFLVAGDGPWGA------R----YR--DLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 317 ~l~~~~~~~~~~~~l~ivG~g~~~~------~----~~--~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
.+.++. ++++++++|+++... . .+ ++.++|.|+|+++.+++..+|+.||++++||. .|++|++
T Consensus 244 ~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~-~e~~~~~ 318 (398)
T cd03800 244 ELPELR----ERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPAL-YEPFGLT 318 (398)
T ss_pred HHHHhC----CCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEeccc-ccccCcH
Confidence 999887 899999999875421 1 11 13478999999999999999999999999997 5999999
Q ss_pred HHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 385 VLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
++|||++|+|||+++.++.. +++.++++|+++++ |+++++++|.+++++ ++.+++|++++++.+.++|||+.++++|
T Consensus 319 l~Ea~a~G~Pvi~s~~~~~~-e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 396 (398)
T cd03800 319 ALEAMACGLPVVATAVGGPR-DIVVDGVTGLLVDPRDPEALAAALRRLLTD-PALRRRLSRAGLRRARARYTWERVAARL 396 (398)
T ss_pred HHHHHhcCCCEEECCCCCHH-HHccCCCCeEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999987 89999999999998 999999999999998 9999999999999998999999999987
Q ss_pred H
Q 011355 464 E 464 (488)
Q Consensus 464 ~ 464 (488)
.
T Consensus 397 ~ 397 (398)
T cd03800 397 L 397 (398)
T ss_pred h
Confidence 5
No 29
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4e-38 Score=306.32 Aligned_cols=349 Identities=20% Similarity=0.225 Sum_probs=247.6
Q ss_pred EEEEEecC-CCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCc-cCcchhHHHHHHH
Q 011355 78 KIALFVKK-WPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTA-AGYLDQSIVWQQL 155 (488)
Q Consensus 78 kIl~i~~~-~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~ 155 (488)
||++++.. +|+ ..||+++++.+++++|.++||+|+|++........ .....++.+....... .........+..+
T Consensus 1 ~i~~i~~~~~~~--~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (363)
T cd04955 1 KIAIIGTRGIPA--KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK-ETEYNGVRLIHIPAPEIGGLGTIIYDILAI 77 (363)
T ss_pred CeEEEecCcCCc--ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc-ccccCCceEEEcCCCCccchhhhHHHHHHH
Confidence 68999654 565 78999999999999999999999999987543331 1122233332221110 0111111111112
Q ss_pred HHHhcCCCCCcEEEeCCcch--H--HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 156 QTQNSTGKPFDVIHTESVGL--R--HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 156 ~~~~~~~~~~Dvv~~~~~~~--~--~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
........++|++|...... . .....+.| ++++.|+..+... ........+..... ...
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~v~~~h~~~~~~~-----------~~~~~~~~~~~~~~-----~~~ 140 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAIAPFLPLLRLKGKK-VVVNMDGLEWKRA-----------KWGRPAKRYLKFGE-----KLA 140 (363)
T ss_pred HHHHhccCCeEEEEecCccHHHHHHHHHhcCCC-EEEEccCcceeec-----------ccccchhHHHHHHH-----HHH
Confidence 22211222666666654331 1 11222456 8999998533210 00001111222111 235
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLM 311 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~l 311 (488)
++.+|.++++|+..++.+.+.+|.+. .+||||+|...+.. ....+++++++++. .++++||+.+.||++.+
T Consensus 141 ~~~ad~ii~~s~~~~~~~~~~~~~~~---~~i~ngv~~~~~~~----~~~~~~~~~~~~~~--~i~~~G~~~~~Kg~~~l 211 (363)
T cd04955 141 VKFADRLIADSPGIKEYLKEKYGRDS---TYIPYGADHVVSSE----EDEILKKYGLEPGR--YYLLVGRIVPENNIDDL 211 (363)
T ss_pred HhhccEEEeCCHHHHHHHHHhcCCCC---eeeCCCcChhhcch----hhhhHHhcCCCCCc--EEEEEecccccCCHHHH
Confidence 67899999999999999977787543 89999999876544 12345556655443 56799999999999999
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhH----Hh---hhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGAR----YR---DLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~----~~---~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
++|++++. .+++|+++|+|+.... ++ .+.++|+++|+++++++..+|.+||++++||...||||++
T Consensus 212 i~a~~~l~-------~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~ 284 (363)
T cd04955 212 IEAFSKSN-------SGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPS 284 (363)
T ss_pred HHHHHhhc-------cCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChH
Confidence 99998874 4689999999854322 22 2348999999999999999999999999999755999999
Q ss_pred HHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 385 VLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
++|||+||+|||+++.++.. |++.+ +|.++++ |. ++++|.+++++ ++.+.++++++++.+.++|||+.+++++
T Consensus 285 ~~EAma~G~PvI~s~~~~~~-e~~~~--~g~~~~~~~~--l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 358 (363)
T cd04955 285 LLEAMAYGCPVLASDNPFNR-EVLGD--KAIYFKVGDD--LASLLEELEAD-PEEVSAMAKAARERIREKYTWEKIADQY 358 (363)
T ss_pred HHHHHHcCCCEEEecCCccc-eeecC--CeeEecCchH--HHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999987 77654 7888886 43 99999999999 8999999999999999999999999999
Q ss_pred HHHHH
Q 011355 464 ERLFL 468 (488)
Q Consensus 464 ~~~~~ 468 (488)
.++|+
T Consensus 359 ~~~y~ 363 (363)
T cd04955 359 EELYK 363 (363)
T ss_pred HHHhC
Confidence 99884
No 30
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=8.5e-39 Score=311.49 Aligned_cols=346 Identities=24% Similarity=0.268 Sum_probs=253.9
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccC-cc--hhHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAG-YL--DQSIVWQQ 154 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~~~~ 154 (488)
||+++++.|||. .++++.++++.|. ||+|++++...............+........... .+ ........
T Consensus 1 ~~~~~~~~~~~~-----~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (367)
T cd05844 1 RVLIFRPLLLAP-----SETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQ 73 (367)
T ss_pred CEEEEeCCCCCC-----chHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccH
Confidence 588999887662 7899999999994 78888888765444332222222222211100000 00 00000111
Q ss_pred HHHHhcCCCCCcEEEeCCcc--h---HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHh
Q 011355 155 LQTQNSTGKPFDVIHTESVG--L---RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEV 229 (488)
Q Consensus 155 ~~~~~~~~~~~Dvv~~~~~~--~---~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
+....++. +||+||+|... . ......++| ++++.|+.......... ... . ....... +.
T Consensus 74 ~~~~~~~~-~~dvvh~~~~~~~~~~~~~~~~~~~p-~i~~~h~~~~~~~~~~~------~~~-~--~~~~~~~-----~~ 137 (367)
T cd05844 74 LRRLLRRH-RPDLVHAHFGFDGVYALPLARRLGVP-LVVTFHGFDATTSLALL------LRS-R--WALYARR-----RR 137 (367)
T ss_pred HHHHHHhh-CCCEEEeccCchHHHHHHHHHHcCCC-EEEEEeCccccccchhh------ccc-c--hhHHHHH-----HH
Confidence 11122222 89999998532 1 122334567 99999975322110000 000 0 1111111 11
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChH
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHP 309 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~ 309 (488)
..++++|.++++|+..++.+.+ +|+++.++.+++||+|.+.+.+... ..++..++++|++.+.||++
T Consensus 138 ~~~~~~d~ii~~s~~~~~~~~~-~~~~~~~i~vi~~g~d~~~~~~~~~------------~~~~~~i~~~G~~~~~K~~~ 204 (367)
T cd05844 138 RLARRAALFIAVSQFIRDRLLA-LGFPPEKVHVHPIGVDTAKFTPATP------------ARRPPRILFVGRFVEKKGPL 204 (367)
T ss_pred HHHHhcCEEEECCHHHHHHHHH-cCCCHHHeEEecCCCCHHhcCCCCC------------CCCCcEEEEEEeeccccChH
Confidence 4567899999999999999988 6888889999999999877654321 12236889999999999999
Q ss_pred HHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC-----C
Q 011355 310 LMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR-----A 378 (488)
Q Consensus 310 ~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~-----~ 378 (488)
.+++|+..+.++. ++++|+++|+|+..+.+++ +.++|+|+|+++.+++..+|+.||++++||.. .
T Consensus 205 ~li~a~~~l~~~~----~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~ 280 (367)
T cd05844 205 LLLEAFARLARRV----PEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDA 280 (367)
T ss_pred HHHHHHHHHHHhC----CCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCc
Confidence 9999999999887 8999999999887665543 35789999999999999999999999999962 4
Q ss_pred CCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHH
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTAT 457 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~ 457 (488)
||+|++++|||+||+|||+++.++.. |++.++++|+++++ |+++++++|.+++++ ++.+.+|++++++++.++|||+
T Consensus 281 E~~~~~~~EA~a~G~PvI~s~~~~~~-e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 281 EGLPVVLLEAQASGVPVVATRHGGIP-EAVEDGETGLLVPEGDVAALAAALGRLLAD-PDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred cCCchHHHHHHHcCCCEEEeCCCCch-hheecCCeeEEECCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHCCHH
Confidence 89999999999999999999999988 88899999999998 999999999999998 8999999999999999999999
Q ss_pred HHHHHHHH
Q 011355 458 KMAAAYER 465 (488)
Q Consensus 458 ~~~~~~~~ 465 (488)
.+++++.+
T Consensus 359 ~~~~~l~~ 366 (367)
T cd05844 359 RQTAKLEA 366 (367)
T ss_pred HHHHHHhc
Confidence 99999875
No 31
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.7e-38 Score=311.52 Aligned_cols=362 Identities=20% Similarity=0.230 Sum_probs=253.6
Q ss_pred EEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-----CCCceEEEecC---------------
Q 011355 79 IALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-----YPISSLYFHLS--------------- 138 (488)
Q Consensus 79 Il~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-----~~~~~i~~~~~--------------- 138 (488)
||++++.+|.++..|| ...+++++++|++. |+|++++.......... .....+.....
T Consensus 1 iL~~~~~~P~P~~~G~-~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGD-KIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLT 78 (397)
T ss_pred CeeecCCCCCCCCCCC-cEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcC
Confidence 6889988776655555 77888999999876 99999998754332211 00111111110
Q ss_pred -CCCccCcchhHHHHHHHHHHhcCCCCCcEEEeCCcchHHhhh---ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChh
Q 011355 139 -KPTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTESVGLRHTRA---RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQ 214 (488)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
.+.....+......+.+.....+. ++|+||+++..+..+.. .+.| .+...|+.....+.. .........
T Consensus 79 ~~p~~~~~~~~~~~~~~l~~~~~~~-~~D~v~~~~~~~~~~~~~~~~~~p-~i~~~~d~~~~~~~~-----~~~~~~~~~ 151 (397)
T TIGR03087 79 GEPLSLPYYRSRRLARWVNALLAAE-PVDAIVVFSSAMAQYVTPHVRGVP-RIVDFVDVDSDKWLQ-----YARTKRWPL 151 (397)
T ss_pred CCCCcchhhCCHHHHHHHHHHHhhC-CCCEEEEeccccceeccccccCCC-eEeehhhHHHHHHHH-----HHhccCcch
Confidence 000001111122333333333333 89999999765443332 3567 888888764332211 111111111
Q ss_pred HHHHHH---HHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCC
Q 011355 215 AYALAE---RASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPEN 291 (488)
Q Consensus 215 ~~~~~~---~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~ 291 (488)
+.++. .... ..+...++++|.++++|+..++.+.+.++.+..++.+||||+|.+.|.+...... .++.+
T Consensus 152 -~~~~~~~~~~~~-~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~------~~~~~ 223 (397)
T TIGR03087 152 -RWIYRREGRLLL-AYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPN------PYPPG 223 (397)
T ss_pred -hHHHHHHHHHHH-HHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccC------CCCCC
Confidence 12221 1111 1234677999999999999999998865556679999999999988765432111 12233
Q ss_pred CcEEEEEEeeeccccChHHHH----HHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh--CCcEEEeCccCHHHHHHHH
Q 011355 292 RSLVLGMAGRLVKDKGHPLMF----EALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL--GTNVIVLGPLDQTRLAMFY 365 (488)
Q Consensus 292 ~~~~i~~~Grl~~~Kg~~~ll----~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l--~~~V~~~g~v~~~~l~~~~ 365 (488)
+ .+++|+|++.+.||++.++ +++..+.++. |+++|+|+|+|+.. .++++ .++|+|+|+++ ++..+|
T Consensus 224 ~-~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~----p~~~l~ivG~g~~~-~~~~l~~~~~V~~~G~v~--~~~~~~ 295 (397)
T TIGR03087 224 K-RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARR----PAAEFYIVGAKPSP-AVRALAALPGVTVTGSVA--DVRPYL 295 (397)
T ss_pred C-cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHC----CCcEEEEECCCChH-HHHHhccCCCeEEeeecC--CHHHHH
Confidence 3 6788999999999999887 5566677777 89999999998864 34443 37899999987 799999
Q ss_pred HhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011355 366 NAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLV 445 (488)
Q Consensus 366 ~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~ 445 (488)
+.||++|+||...||+|++++|||+||+|||+|+.++ . .+...+++|++++.|+++++++|.++++| ++.+++|+++
T Consensus 296 ~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~-~-~i~~~~~~g~lv~~~~~~la~ai~~ll~~-~~~~~~~~~~ 372 (397)
T TIGR03087 296 AHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAA-E-GIDALPGAELLVAADPADFAAAILALLAN-PAEREELGQA 372 (397)
T ss_pred HhCCEEEecccccCCcccHHHHHHHcCCCEEecCccc-c-cccccCCcceEeCCCHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 9999999999756999999999999999999999754 2 33445567888866999999999999998 9999999999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHH
Q 011355 446 ARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 446 a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
+++++.++|||+.+++++.++|.
T Consensus 373 ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 373 ARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999999999999885
No 32
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.3e-38 Score=306.64 Aligned_cols=356 Identities=24% Similarity=0.271 Sum_probs=263.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCC-CccCcchhHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKP-TAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~ 156 (488)
||++++..||| ..||.+.++..++++|.++||+|++++........... ....+..... ...........+..+.
T Consensus 1 kIl~i~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T cd03814 1 RIAIVTDTFLP--QVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--RVVPVPSVPLPGYPEIRLALPPRRRVR 76 (364)
T ss_pred CeEEEecccCc--cccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--CceeecccccCcccceEecccchhhHH
Confidence 69999999987 56999999999999999999999999987643322211 1111111100 0000000011122222
Q ss_pred HHhcCCCCCcEEEeCCcch------HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 011355 157 TQNSTGKPFDVIHTESVGL------RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVK 230 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~------~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (488)
...+.. +||+||+++... ......++| ++..+|+........ ... .........+.+ .
T Consensus 77 ~~~~~~-~pdii~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~-----~ 140 (364)
T cd03814 77 RLLDAF-APDVVHIATPGPLGLAALRAARRLGIP-VVTSYHTDFPEYLRY--------YGL-GPLSWLAWAYLR-----W 140 (364)
T ss_pred HHHHhc-CCCEEEEeccchhhHHHHHHHHHcCCC-EEEEEecChHHHhhh--------ccc-chHhHhhHHHHH-----H
Confidence 222222 899999986422 122234567 888899754322110 000 011111111111 4
Q ss_pred hcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHH
Q 011355 231 FFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPL 310 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ 310 (488)
+++++|.++++|+...+.+.+ . ...++.+++||+|...+.+.... ...+++++ +.++ ++++++|++.+.||++.
T Consensus 141 ~~~~~d~i~~~s~~~~~~~~~-~--~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~-~~~~-~~i~~~G~~~~~k~~~~ 214 (364)
T cd03814 141 FHNRADRVLVPSPSLADELRA-R--GFRRVRLWPRGVDTELFHPRRRD-EALRARLG-PPDR-PVLLYVGRLAPEKNLEA 214 (364)
T ss_pred HHHhCCEEEeCCHHHHHHHhc-c--CCCceeecCCCccccccCccccc-HHHHHHhC-CCCC-eEEEEEeccccccCHHH
Confidence 567899999999999986655 3 34689999999999877654332 34455555 3333 78999999999999999
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHH
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAML 390 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma 390 (488)
+++++..+.++ ++++++++|+|+..+.++...++|.+.|+++.+++.++|+.||++++||. .|++|++++|||+
T Consensus 215 ~i~~~~~l~~~-----~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~-~e~~~~~~lEa~a 288 (364)
T cd03814 215 LLDADLPLRRR-----PPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSR-TETFGLVVLEAMA 288 (364)
T ss_pred HHHHHHHhhhc-----CCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcc-cccCCcHHHHHHH
Confidence 99999998754 47999999999888777767789999999999999999999999999997 5999999999999
Q ss_pred cCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 391 SGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 391 ~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
||+|||+++.++.. +++.++++|+++++ |.++++++|.+++++ ++.+.+|++++++.+ ++|+|+.+++++.++|+
T Consensus 289 ~g~PvI~~~~~~~~-~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 289 SGLPVVAPDAGGPA-DIVTDGENGLLVEPGDAEAFAAALAALLAD-PELRRRMAARARAEA-ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred cCCCEEEcCCCCch-hhhcCCcceEEcCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH-hhcCHHHHHHHHHHhhC
Confidence 99999999999987 88888899999999 999999999999999 999999999999999 66999999999998873
No 33
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.6e-38 Score=305.90 Aligned_cols=341 Identities=26% Similarity=0.318 Sum_probs=249.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCCCccCcchhHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKPTAAGYLDQSIVWQQL 155 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 155 (488)
||++++..||| ..||.++++.+++++|.++||+|++++.......... ............. ..........+..+
T Consensus 1 kil~i~~~~~p--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (357)
T cd03795 1 RVLHVGKFYPP--DRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLN-VASTPFSPSFFKQL 77 (357)
T ss_pred CeeEecCCCCC--CCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccc-cccccccHHHHHHH
Confidence 78999988887 4899999999999999999999999998764433221 1111111111110 00000111111111
Q ss_pred HHHhcCCCCCcEEEeCCcch----HHhhh-ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 011355 156 QTQNSTGKPFDVIHTESVGL----RHTRA-RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVK 230 (488)
Q Consensus 156 ~~~~~~~~~~Dvv~~~~~~~----~~~~~-~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (488)
. .... +||+||+|.... ..... .+.| .+.++|+..... .........+.+ +
T Consensus 78 ~--~~~~-~~Dii~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~---------------~~~~~~~~~~~~-----~ 133 (357)
T cd03795 78 K--KLAK-KADVIHLHFPNPLADLALLLLPRKKP-VVVHWHSDIVKQ---------------KLLLKLYRPLQR-----R 133 (357)
T ss_pred H--hcCC-CCCEEEEecCcchHHHHHHHhccCce-EEEEEcChhhcc---------------chhhhhhhHHHH-----H
Confidence 1 1122 899999986421 11111 2445 888888632110 000111222211 3
Q ss_pred hcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHH
Q 011355 231 FFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPL 310 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ 310 (488)
+++++|.++++|+...+.+...++. ..++.++|||+|...+.+...... .....+.++ ++++++|++.+.||++.
T Consensus 134 ~~~~~d~vi~~s~~~~~~~~~~~~~-~~~~~~i~~gi~~~~~~~~~~~~~---~~~~~~~~~-~~i~~~G~~~~~K~~~~ 208 (357)
T cd03795 134 FLRRADAIVATSPNYAETSPVLRRF-RDKVRVIPLGLDPARYPRPDALEE---AIWRRAAGR-PFFLFVGRLVYYKGLDV 208 (357)
T ss_pred HHHhcCEEEeCcHHHHHHHHHhcCC-ccceEEecCCCChhhcCCcchhhh---HhhcCCCCC-cEEEEecccccccCHHH
Confidence 5688999999999999988875544 378999999999987765432211 122223344 78999999999999999
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCC-CCCCCCh
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTL-RAQGLDH 383 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~-~~eg~~~ 383 (488)
+++|++++ .+++++|+|+|+..+.+++ +.++|+|+|+++++++..+|+.||++++||. ..|++|+
T Consensus 209 li~a~~~l--------~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~ 280 (357)
T cd03795 209 LLEAAAAL--------PDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGI 280 (357)
T ss_pred HHHHHHhc--------cCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccch
Confidence 99999987 4689999999987765554 3479999999999999999999999999996 3599999
Q ss_pred HHHHHHHcCCcEEEeCCCCcccceeec-CCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHH
Q 011355 384 TVLEAMLSGKPLMATRLASIVGSVIVG-TDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMA 460 (488)
Q Consensus 384 ~~lEAma~G~PVI~~~~~~~~~e~v~~-~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~ 460 (488)
+++|||++|+|||+++.++.. +.+.+ +++|+++++ |+++++++|.+++++ ++.+++|++++++.+.++|||++++
T Consensus 281 ~~~Ea~~~g~Pvi~~~~~~~~-~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 281 VLLEAMAFGKPVISTEIGTGG-SYVNLHGVTGLVVPPGDPAALAEAIRRLLED-PELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred HHHHHHHcCCCEEecCCCCch-hHHhhCCCceEEeCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHhcchHhhC
Confidence 999999999999999999988 66665 899999998 999999999999999 9999999999999999999999864
No 34
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=4.1e-38 Score=302.70 Aligned_cols=324 Identities=22% Similarity=0.275 Sum_probs=240.2
Q ss_pred eEEEEEecCCC--CCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHH
Q 011355 77 LKIALFVKKWP--HRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQ 154 (488)
Q Consensus 77 mkIl~i~~~~p--~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 154 (488)
|||+++++.+. ++...||+++++..|+++|.++||+|++++...................... ..........+..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDA--PGRDRAEAEALAL 78 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCccccc--chhhHhhHHHHHH
Confidence 89999998762 1348999999999999999999999999998764322111000000000000 0011122223333
Q ss_pred HHHHhcCCCCCcEEEeCCcchH--HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhc
Q 011355 155 LQTQNSTGKPFDVIHTESVGLR--HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFF 232 (488)
Q Consensus 155 ~~~~~~~~~~~Dvv~~~~~~~~--~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (488)
+....+.. +||+||+|+.... .....+.| ++.+.|+...... .. .....
T Consensus 79 ~~~~~~~~-~~Divh~~~~~~~~~~~~~~~~~-~v~~~h~~~~~~~-----------------~~----------~~~~~ 129 (335)
T cd03802 79 AERALAAG-DFDIVHNHSLHLPLPFARPLPVP-VVTTLHGPPDPEL-----------------LK----------LYYAA 129 (335)
T ss_pred HHHHHhcC-CCCEEEecCcccchhhhcccCCC-EEEEecCCCCccc-----------------ch----------HHHhh
Confidence 33444443 8999999975433 23334556 9999998643211 00 01334
Q ss_pred CCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHH
Q 011355 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMF 312 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll 312 (488)
...+.++++|+...+.+... .++.+||||+|.+.+.+.. .++ ..++++||+.+.||++.++
T Consensus 130 ~~~~~~~~~s~~~~~~~~~~-----~~~~vi~ngvd~~~~~~~~-------------~~~-~~i~~~Gr~~~~Kg~~~li 190 (335)
T cd03802 130 RPDVPFVSISDAQRRPWPPL-----PWVATVHNGIDLDDYPFRG-------------PKG-DYLLFLGRISPEKGPHLAI 190 (335)
T ss_pred CcCCeEEEecHHHHhhcccc-----cccEEecCCcChhhCCCCC-------------CCC-CEEEEEEeeccccCHHHHH
Confidence 67788999999988876541 7899999999998776521 223 5788999999999999999
Q ss_pred HHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh-------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHH
Q 011355 313 EALKQLLAENDTFRRSTVFLVAGDGPWGARYRD-------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTV 385 (488)
Q Consensus 313 ~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~-------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~ 385 (488)
++++. .+++|+++|.|+..+.... +.++|+|+|+++++++..+|+.+|++++||...|+||+++
T Consensus 191 ~~~~~---------~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~ 261 (335)
T cd03802 191 RAARR---------AGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVM 261 (335)
T ss_pred HHHHh---------cCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHH
Confidence 98653 4789999999876543332 2589999999999999999999999999997569999999
Q ss_pred HHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHH
Q 011355 386 LEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYER 465 (488)
Q Consensus 386 lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 465 (488)
+|||+||+|||+++.|+.. |++.++.+|++++ ++++++++|.++.+. + .+++++.+.++|||+.++++|.+
T Consensus 262 lEAma~G~PvI~~~~~~~~-e~i~~~~~g~l~~-~~~~l~~~l~~l~~~-~------~~~~~~~~~~~~s~~~~~~~~~~ 332 (335)
T cd03802 262 IEAMACGTPVIAFRRGAVP-EVVEDGVTGFLVD-SVEELAAAVARADRL-D------RAACRRRAERRFSAARMVDDYLA 332 (335)
T ss_pred HHHHhcCCCEEEeCCCCch-hheeCCCcEEEeC-CHHHHHHHHHHHhcc-H------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999998 8999999999999 599999999998765 2 24677888899999999999999
Q ss_pred HHH
Q 011355 466 LFL 468 (488)
Q Consensus 466 ~~~ 468 (488)
+|+
T Consensus 333 ~y~ 335 (335)
T cd03802 333 LYR 335 (335)
T ss_pred HhC
Confidence 984
No 35
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=3.9e-38 Score=316.72 Aligned_cols=378 Identities=21% Similarity=0.246 Sum_probs=258.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-------------------------CCCce
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-------------------------YPISS 132 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------------------------~~~~~ 132 (488)
||+++++.+.|....||.+.++..|+++|++.||+|.|+++......... ....+
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 69999998766678999999999999999999999999998754332110 01112
Q ss_pred EEEecCCCCc------------cCcch----hHHHHHHHHHH-hcCCCCCcEEEeCCcc---hHHhhh--------ccCC
Q 011355 133 LYFHLSKPTA------------AGYLD----QSIVWQQLQTQ-NSTGKPFDVIHTESVG---LRHTRA--------RNLT 184 (488)
Q Consensus 133 i~~~~~~~~~------------~~~~~----~~~~~~~~~~~-~~~~~~~Dvv~~~~~~---~~~~~~--------~~~p 184 (488)
+.+....... ....+ +.......... .....+|||||+|+.. ++.++. .+.|
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 2222111100 00000 01011111111 1112389999999742 222222 1456
Q ss_pred cEEEeeeCCcchhhhhhhhHhhhcCCC-ChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHH---------Hhc
Q 011355 185 NVVVSWHGIAYETIHSDIIQELLRTPE-EPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKR---------IYM 254 (488)
Q Consensus 185 ~~v~~~h~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~---------~~g 254 (488)
++.++|+..+................ ......-.........+...+..+|.++++|+..++.+.+ .+.
T Consensus 161 -~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~ 239 (476)
T cd03791 161 -TVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLR 239 (476)
T ss_pred -EEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHH
Confidence 99999997654321111000000000 0000000000000011124467899999999999988764 223
Q ss_pred CCCCcEEEecCCccCCCcCCCccc-----------------chhhhhhhCCC--CCCcEEEEEEeeeccccChHHHHHHH
Q 011355 255 IPEERVHVILNGVDEEVFKPDVAM-----------------GKDFKKKFGIP--ENRSLVLGMAGRLVKDKGHPLMFEAL 315 (488)
Q Consensus 255 ~~~~~i~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~~i~--~~~~~~i~~~Grl~~~Kg~~~ll~a~ 315 (488)
.+..++.+|+||+|.+.+.+.... +..+++++|++ ++. ++++++||+.++||++.+++++
T Consensus 240 ~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~-~~i~~vGrl~~~Kg~~~li~a~ 318 (476)
T cd03791 240 ARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDA-PLFGFVGRLTEQKGIDLLLEAL 318 (476)
T ss_pred hccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCC-CEEEEEeeccccccHHHHHHHH
Confidence 356899999999999888764321 34578899986 444 7899999999999999999999
Q ss_pred HHhHhhccCCCCCeEEEEEeCCCch--hHHhh----hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHH
Q 011355 316 KQLLAENDTFRRSTVFLVAGDGPWG--ARYRD----LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAM 389 (488)
Q Consensus 316 ~~l~~~~~~~~~~~~l~ivG~g~~~--~~~~~----l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAm 389 (488)
..+.+ .+++|+++|+|+.. +.+++ ..++|.+.+..+.+++..+|+.||++++||.. |+||++.+|||
T Consensus 319 ~~l~~------~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~-E~~gl~~lEAm 391 (476)
T cd03791 319 PELLE------LGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRF-EPCGLTQMYAM 391 (476)
T ss_pred HHHHH------cCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCC-CCCcHHHHHHh
Confidence 99876 35899999998532 33333 24688877666777888999999999999975 99999999999
Q ss_pred HcCCcEEEeCCCCcccceeecCC------ceeEeCC-CHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhhhCCHHHHH
Q 011355 390 LSGKPLMATRLASIVGSVIVGTD------MGYLFSP-QVESVKKALYGIWAD--GREVLEKKGLVARKRGLNLFTATKMA 460 (488)
Q Consensus 390 a~G~PVI~~~~~~~~~e~v~~~~------~g~l~~~-d~~~la~~i~~ll~~--~~~~~~~~~~~a~~~~~~~fs~~~~~ 460 (488)
+||+|||+++.||+. |++.++. +|+++++ |+++++++|.++++. .++.+.++++++.+ +.|||+.++
T Consensus 392 a~G~pvI~~~~gg~~-e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a 467 (476)
T cd03791 392 RYGTVPIVRATGGLA-DTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMA---QDFSWDRSA 467 (476)
T ss_pred hCCCCCEECcCCCcc-ceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc---cCCChHHHH
Confidence 999999999999998 8888887 9999999 999999999998862 26777777777654 569999999
Q ss_pred HHHHHHHH
Q 011355 461 AAYERLFL 468 (488)
Q Consensus 461 ~~~~~~~~ 468 (488)
++|.++|+
T Consensus 468 ~~~~~~y~ 475 (476)
T cd03791 468 KEYLELYR 475 (476)
T ss_pred HHHHHHHh
Confidence 99999986
No 36
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=2.2e-37 Score=300.77 Aligned_cols=361 Identities=29% Similarity=0.439 Sum_probs=271.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEec-CCCCccCcchhHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHL-SKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~ 156 (488)
||++++..+|+ ..||.+.++..++++|.+.||+|.+++.................... .................+.
T Consensus 1 kI~ii~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
T cd03801 1 KILLVTPEYPP--SVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLR 78 (374)
T ss_pred CeeEEecccCC--ccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHH
Confidence 68999988776 37999999999999999999999999988654433221111111100 0000001112222222333
Q ss_pred HHhcCCCCCcEEEeCCcchHHh-----hhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 157 TQNSTGKPFDVIHTESVGLRHT-----RARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~~~~-----~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
...... +||+||++....... ...+.| ++...|+......... ........... ....
T Consensus 79 ~~~~~~-~~Dii~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~----------~~~~~~~~~~~-----~~~~ 141 (374)
T cd03801 79 RLLRRE-RFDVVHAHDWLALLAAALAARLLGIP-LVLTVHGLEFGRPGNE----------LGLLLKLARAL-----ERRA 141 (374)
T ss_pred HHhhhc-CCcEEEEechhHHHHHHHHHHhcCCc-EEEEeccchhhccccc----------hhHHHHHHHHH-----HHHH
Confidence 333333 899999997543322 234556 9999998754322111 00001111111 2255
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLM 311 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~l 311 (488)
++.+|.++++|+...+.+.+.++.+..++.++|||+|...+.... ...+.....+.+. ++++++|++.+.||++.+
T Consensus 142 ~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~i~~~g~~~~~k~~~~~ 217 (374)
T cd03801 142 LRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP---RAARRRLGIPEDE-PVILFVGRLVPRKGVDLL 217 (374)
T ss_pred HHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc---hHHHhhcCCcCCC-eEEEEecchhhhcCHHHH
Confidence 788999999999999999997766557999999999988775432 2233333334444 889999999999999999
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHH
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTV 385 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~ 385 (488)
++++..+.++. ++++|+++|.++..+.+++ ..++|.+.|+++.+++.++|+.||++++|+.. ||+|+++
T Consensus 218 i~~~~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~-~~~~~~~ 292 (374)
T cd03801 218 LEALAKLRKEY----PDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLY-EGFGLVL 292 (374)
T ss_pred HHHHHHHhhhc----CCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchh-ccccchH
Confidence 99999999887 8999999998877766554 45899999999999999999999999999975 9999999
Q ss_pred HHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHH
Q 011355 386 LEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYE 464 (488)
Q Consensus 386 lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 464 (488)
+|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++++ ++.+.++++++++.+.+.|+|+++++++.
T Consensus 293 ~Ea~~~g~pvI~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (374)
T cd03801 293 LEAMAAGLPVVASDVGGIP-EVVEDGETGLLVPPGDPEALAEAILRLLDD-PELRRRLGEAARERVAERFSWDRVAARTE 370 (374)
T ss_pred HHHHHcCCcEEEeCCCChh-HHhcCCcceEEeCCCCHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999987 88888999999999 899999999999999 89999999999989999999999999999
Q ss_pred HHHH
Q 011355 465 RLFL 468 (488)
Q Consensus 465 ~~~~ 468 (488)
++|+
T Consensus 371 ~~~~ 374 (374)
T cd03801 371 EVYY 374 (374)
T ss_pred HhhC
Confidence 8873
No 37
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=7.1e-38 Score=303.96 Aligned_cols=351 Identities=24% Similarity=0.314 Sum_probs=266.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQT 157 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 157 (488)
||++++..+ ..||+++.+..++++|.+.||+|.+++..............++.+...... ........+..+..
T Consensus 1 ~i~~i~~~~----~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~ 74 (365)
T cd03807 1 KVLHVITGL----DVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKR--PGRPDPGALLRLYK 74 (365)
T ss_pred CeEEEEeec----cCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecc--cccccHHHHHHHHH
Confidence 688998866 349999999999999999999999999765433221111112222221110 11122222333333
Q ss_pred HhcCCCCCcEEEeCCcch--H----HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 158 QNSTGKPFDVIHTESVGL--R----HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 158 ~~~~~~~~Dvv~~~~~~~--~----~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
..++. +||+||++.... . .....+.+ ++++.|+...... .........+.+ ..
T Consensus 75 ~~~~~-~~div~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~--------------~~~~~~~~~~~~-----~~ 133 (365)
T cd03807 75 LIRRL-RPDVVHTWMYHADLYGGLAARLAGVPP-VIWGIRHSDLDLG--------------KKSTRLVARLRR-----LL 133 (365)
T ss_pred HHHhh-CCCEEEeccccccHHHHHHHHhcCCCc-EEEEecCCccccc--------------chhHhHHHHHHH-----Hh
Confidence 33333 899999985321 1 11113345 8999998644311 000122222222 34
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLM 311 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~l 311 (488)
.+.+|.++++|+...+.+.+ ++++..++.+++||+|...+..........+++++++++. ++++++|++.+.||++.+
T Consensus 134 ~~~~~~~i~~s~~~~~~~~~-~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~K~~~~l 211 (365)
T cd03807 134 SSFIPLIVANSAAAAEYHQA-IGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDT-FLIGIVARLHPQKDHATL 211 (365)
T ss_pred ccccCeEEeccHHHHHHHHH-cCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCC-eEEEEecccchhcCHHHH
Confidence 57789999999999999988 5888889999999999887776655556677889988776 889999999999999999
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh-------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD-------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~-------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
++++..+.++. ++++++++|.++.....+. +.++|.+.|. .+++.++|+.||++++||.. ||+|++
T Consensus 212 i~a~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~-e~~~~~ 284 (365)
T cd03807 212 LRAAALLLKKF----PNARLLLVGDGPDRANLELLALKELGLEDKVILLGE--RSDVPALLNALDVFVLSSLS-EGFPNV 284 (365)
T ss_pred HHHHHHHHHhC----CCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccc--cccHHHHHHhCCEEEeCCcc-ccCCcH
Confidence 99999998887 8999999999876543322 3468999997 45899999999999999985 999999
Q ss_pred HHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 385 VLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
++|||+||+|||+++.++.. +++.+ +|+++++ |+++++++|.+++++ ++.+.++++++++.+.++|||++++++|
T Consensus 285 ~~Ea~a~g~PvI~~~~~~~~-e~~~~--~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 360 (365)
T cd03807 285 LLEAMACGLPVVATDVGDNA-ELVGD--TGFLVPPGDPEALAEAIEALLAD-PALRQALGEAARERIEENFSIEAMVEAY 360 (365)
T ss_pred HHHHHhcCCCEEEcCCCChH-HHhhc--CCEEeCCCCHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999987 77766 8999998 999999999999999 8999999999999999999999999999
Q ss_pred HHHHH
Q 011355 464 ERLFL 468 (488)
Q Consensus 464 ~~~~~ 468 (488)
.++|+
T Consensus 361 ~~~y~ 365 (365)
T cd03807 361 EELYR 365 (365)
T ss_pred HHHhC
Confidence 99884
No 38
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=7.7e-38 Score=304.89 Aligned_cols=355 Identities=24% Similarity=0.256 Sum_probs=258.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCce--EEEe--cCCCCccCcchhHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISS--LYFH--LSKPTAAGYLDQSIVWQ 153 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~--i~~~--~~~~~~~~~~~~~~~~~ 153 (488)
||+++++.+++ ..||.++++.+++++|.+.||+|++++............... .... .................
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLL 78 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHH
Confidence 68999988875 789999999999999999999999999876543322211110 0000 00000000001111111
Q ss_pred HHHHHhcCCCCCcEEEeCCcch-------HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHH
Q 011355 154 QLQTQNSTGKPFDVIHTESVGL-------RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVV 226 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~~~~~-------~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
...... ..++|+||+++... ......+.| ++...|+....... .. ..+...+....
T Consensus 79 ~~~~~~--~~~~dii~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~----------~~----~~~~~~~~~~~ 141 (375)
T cd03821 79 AWLRLN--IREADIVHVHGLWSYPSLAAARAARKYGIP-YVVSPHGMLDPWAL----------PH----KALKKRLAWFL 141 (375)
T ss_pred HHHHHh--CCCCCEEEEecccchHHHHHHHHHHHhCCC-EEEEcccccccccc----------cc----chhhhHHHHHH
Confidence 122222 22899999987321 111223556 88899985432210 01 11112222222
Q ss_pred HHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecccc
Q 011355 227 EEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDK 306 (488)
Q Consensus 227 ~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~K 306 (488)
.+...++.++.+++.|+........ +.+..++.++|||+|.+.+........ |+.++.+.++ ++++++|++.+.|
T Consensus 142 ~~~~~~~~~~~i~~~s~~~~~~~~~--~~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~G~~~~~K 216 (375)
T cd03821 142 FERRLLQAAAAVHATSEQEAAEIRR--LGLKAPIAVIPNGVDIPPFAALPSRGR--RRKFPILPDK-RIILFLGRLHPKK 216 (375)
T ss_pred HHHHHHhcCCEEEECCHHHHHHHHh--hCCcccEEEcCCCcChhccCcchhhhh--hhhccCCCCC-cEEEEEeCcchhc
Confidence 2335568899999999877777665 235678999999999987765443222 6666666666 8899999999999
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch--hHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG--ARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~--~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
|++.+++++..+.+++ ++++++++|.++.. ..++. +.++|+++|+++++++..+|+.||++++||..
T Consensus 217 ~~~~li~a~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~- 291 (375)
T cd03821 217 GLDLLIEAFAKLAERF----PDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHS- 291 (375)
T ss_pred CHHHHHHHHHHhhhhc----CCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEecccc-
Confidence 9999999999999888 89999999986432 22222 34789999999999999999999999999975
Q ss_pred CCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHH
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATK 458 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~ 458 (488)
||+|++++|||+||+|||+++.++.. +++.+ ..|++++.+.++++++|.+++++ ++.++++++++++.+.++|+|+.
T Consensus 292 e~~~~~~~Eama~G~PvI~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~ 368 (375)
T cd03821 292 ENFGIVVAEALACGTPVVTTDKVPWQ-ELIEY-GCGWVVDDDVDALAAALRRALEL-PQRLKAMGENGRALVEERFSWTA 368 (375)
T ss_pred CCCCcHHHHHHhcCCCEEEcCCCCHH-HHhhc-CceEEeCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999988 77777 88998887779999999999999 89999999999999889999999
Q ss_pred HHHHHH
Q 011355 459 MAAAYE 464 (488)
Q Consensus 459 ~~~~~~ 464 (488)
+++++.
T Consensus 369 ~~~~~~ 374 (375)
T cd03821 369 IAQQLL 374 (375)
T ss_pred HHHHhh
Confidence 999875
No 39
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=2.4e-37 Score=303.64 Aligned_cols=358 Identities=16% Similarity=0.171 Sum_probs=245.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCc--cCc-ch---h
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTA--AGY-LD---Q 148 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~-~~---~ 148 (488)
++-||++++. ..+|.+.++..+++.|+++||+|++++..............++.++...... .+. .. +
T Consensus 2 ~~~~~~~~~~------~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 75 (415)
T cd03816 2 KRKRVCVLVL------GDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFA 75 (415)
T ss_pred CccEEEEEEe------cccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHH
Confidence 3457888875 4566677778999999999999999998754332221223344444332211 110 01 0
Q ss_pred -HH----HHHHHHHHhcCCCCCcEEEeCCcc-h----HHh---hhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhH
Q 011355 149 -SI----VWQQLQTQNSTGKPFDVIHTESVG-L----RHT---RARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQA 215 (488)
Q Consensus 149 -~~----~~~~~~~~~~~~~~~Dvv~~~~~~-~----~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 215 (488)
.. .+..+....... +||+||+|+.. + ..+ ...+.| ++.++|+.++.... .........
T Consensus 76 ~~~~~~~~~~~~~~l~~~~-~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~-~V~~~h~~~~~~~~-------~~~~~~~~~ 146 (415)
T cd03816 76 PLKVLWQFFSLLWLLYKLR-PADYILIQNPPSIPTLLIAWLYCLLRRTK-LIIDWHNYGYTILA-------LKLGENHPL 146 (415)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCCchHHHHHHHHHHHhCCe-EEEEcCCchHHHHh-------cccCCCCHH
Confidence 01 111112122233 89999998632 1 111 123456 89999986432110 001111111
Q ss_pred HHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccc--hhhhh---------
Q 011355 216 YALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMG--KDFKK--------- 284 (488)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~--~~~r~--------- 284 (488)
..+..++.+ ..++.+|.++++|+.+++.+.+ +|.+.+++.|||||.+ ..|.+..... ..+.+
T Consensus 147 ~~~~~~~e~-----~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~~-~~f~p~~~~~~~~~~~~~~~~~~~~~ 219 (415)
T cd03816 147 VRLAKWYEK-----LFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRPP-EQFRPLPLEEKHELFLKLAKTFLTRE 219 (415)
T ss_pred HHHHHHHHH-----HHhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCCH-HHceeCcHHHHHHHHHhccccccccc
Confidence 123333332 4568899999999999999988 7888999999999954 4444432211 11111
Q ss_pred ----hhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhh------ccCCCCCeEEEEEeCCCchhHHhhh----C-Cc
Q 011355 285 ----KFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAE------NDTFRRSTVFLVAGDGPWGARYRDL----G-TN 349 (488)
Q Consensus 285 ----~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~------~~~~~~~~~l~ivG~g~~~~~~~~l----~-~~ 349 (488)
..++.+++..+++++||+.+.||++.+++|+..+.+. + |+++|+|+|+|+..+.++++ + ++
T Consensus 220 ~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~----~~i~l~ivG~G~~~~~l~~~~~~~~l~~ 295 (415)
T cd03816 220 LRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKL----PKLLCIITGKGPLKEKYLERIKELKLKK 295 (415)
T ss_pred cccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccC----CCEEEEEEecCccHHHHHHHHHHcCCCc
Confidence 1123344447788999999999999999999998752 3 68999999999987766652 2 45
Q ss_pred EEEe-CccCHHHHHHHHHhcCEEEeCCC--CCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHH
Q 011355 350 VIVL-GPLDQTRLAMFYNAIDIFVNPTL--RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKK 426 (488)
Q Consensus 350 V~~~-g~v~~~~l~~~~~~adv~v~ps~--~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~ 426 (488)
+.+. |+++.+++.++|++||+++.|+. ..||+|++++|||+||+|||+++.++.. |++.++.+|++++ |++++++
T Consensus 296 ~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~-eiv~~~~~G~lv~-d~~~la~ 373 (415)
T cd03816 296 VTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCID-ELVKHGENGLVFG-DSEELAE 373 (415)
T ss_pred EEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHH-HHhcCCCCEEEEC-CHHHHHH
Confidence 6554 78999999999999999986532 2478999999999999999999999988 9999999999997 9999999
Q ss_pred HHHHHHhcC--HHHHHHHHHHHHHHHhhhCCHHHHHHH
Q 011355 427 ALYGIWADG--REVLEKKGLVARKRGLNLFTATKMAAA 462 (488)
Q Consensus 427 ~i~~ll~~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~ 462 (488)
+|.++++++ ++.+++|++++++..+ ++|++..++
T Consensus 374 ~i~~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~ 409 (415)
T cd03816 374 QLIDLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDR 409 (415)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHH
Confidence 999999973 7889999999999984 466665444
No 40
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=5e-38 Score=305.58 Aligned_cols=355 Identities=22% Similarity=0.215 Sum_probs=260.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCcc-CcchhHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAA-GYLDQSIVWQQLQ 156 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~ 156 (488)
||++++..++++ ..||+++++.+++++|.+.||+|++++.......................... ........+....
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRL 79 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHH
Confidence 688888777654 78999999999999999999999999988654443321111111000000000 1111111222222
Q ss_pred HHhcCCCCCcEEEeCCcchHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCcc
Q 011355 157 TQNSTGKPFDVIHTESVGLRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYA 236 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 236 (488)
.... . ++|+||+++.........+.| .+..+|+........... ........... ...++++|
T Consensus 80 ~~~~-~-~~Dii~~~~~~~~~~~~~~~~-~i~~~hd~~~~~~~~~~~---------~~~~~~~~~~~-----~~~~~~~d 142 (365)
T cd03809 80 LLLL-L-GLDLLHSPHNTAPLLRLRGVP-VVVTIHDLIPLRFPEYFS---------PGFRRYFRRLL-----RRALRRAD 142 (365)
T ss_pred Hhhh-c-CCCeeeecccccCcccCCCCC-EEEEeccchhhhCcccCC---------HHHHHHHHHHH-----HHHHHHcC
Confidence 2222 2 899999998655443445567 999999875432211110 00011112111 24578899
Q ss_pred EEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHH
Q 011355 237 HHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALK 316 (488)
Q Consensus 237 ~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~ 316 (488)
.++++|+..++.+.+.++.+..++.++|||+|...+....... +.+.....++ ++++++|++.+.||++.+++++.
T Consensus 143 ~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~i~~~G~~~~~K~~~~~l~~~~ 218 (365)
T cd03809 143 AIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE---VLRALYLLPR-PYFLYVGTIEPRKNLERLLEAFA 218 (365)
T ss_pred EEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH---HHHHhcCCCC-CeEEEeCCCccccCHHHHHHHHH
Confidence 9999999999999998887788999999999988775543211 3333344454 78899999999999999999999
Q ss_pred HhHhhccCCCCCeEEEEEeCCCchh-HH-h-----hhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHH
Q 011355 317 QLLAENDTFRRSTVFLVAGDGPWGA-RY-R-----DLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAM 389 (488)
Q Consensus 317 ~l~~~~~~~~~~~~l~ivG~g~~~~-~~-~-----~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAm 389 (488)
.+.++. ++++|+++|.++... .. + ...++|+++|+++.+++.++|+.||++++||. .|++|++++|||
T Consensus 219 ~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~-~e~~~~~~~Ea~ 293 (365)
T cd03809 219 RLPAKG----PDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL-YEGFGLPVLEAM 293 (365)
T ss_pred HHHHhc----CCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch-hccCCCCHHHHh
Confidence 999887 789999999765332 11 1 24589999999999999999999999999997 599999999999
Q ss_pred HcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHH
Q 011355 390 LSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYE 464 (488)
Q Consensus 390 a~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 464 (488)
++|+|||+++.++.. |++ +.+|+++++ |.++++++|.+++++ ++.+..+++++++.+ ++|+|+++++++.
T Consensus 294 a~G~pvI~~~~~~~~-e~~--~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~-~~~sw~~~~~~~~ 364 (365)
T cd03809 294 ACGTPVIASNISSLP-EVA--GDAALYFDPLDPEALAAAIERLLED-PALREELRERGLARA-KRFSWEKTARRTL 364 (365)
T ss_pred cCCCcEEecCCCCcc-cee--cCceeeeCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHH-HhCCHHHHHHHHh
Confidence 999999999999988 666 356888888 999999999999998 999999999999766 5599999998875
No 41
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=3.3e-37 Score=300.46 Aligned_cols=360 Identities=24% Similarity=0.354 Sum_probs=261.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQT 157 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 157 (488)
||++++..||| ..||.+..+..++++|.+.||+|++++..................................+..+..
T Consensus 1 kil~~~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
T cd03817 1 KIGIFTDTYLP--QVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALII 78 (374)
T ss_pred CeeEeehhccC--CCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHH
Confidence 68999998887 6799999999999999999999999998764433222111100000000000000111111122222
Q ss_pred HhcCCCCCcEEEeCCcchH------HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 158 QNSTGKPFDVIHTESVGLR------HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 158 ~~~~~~~~Dvv~~~~~~~~------~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
..... +||+||+++.... .....++| ++.+.|+.+....+.. . ...... ...... ..+...
T Consensus 79 ~~~~~-~~Div~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~-----~-~~~~~~-~~~~~~----~~~~~~ 145 (374)
T cd03817 79 ILKEL-GPDIVHTHTPFSLGLLGLRVARKLGIP-VVATYHTMYEDYTHYV-----P-LGRLLA-RAVVRR----KLSRRF 145 (374)
T ss_pred HHhhc-CCCEEEECCchhhhhHHHHHHHHcCCC-EEEEecCCHHHHHHHH-----h-cccchh-HHHHHH----HHHHHH
Confidence 22222 8999999864221 11223567 8999998654221111 0 000000 111110 122356
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLM 311 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~l 311 (488)
++.+|.++++|+..++.+.+ ++.+ .++.++|||+|...+..... ...++++++++++ ++++++|++.+.||++.+
T Consensus 146 ~~~~d~i~~~s~~~~~~~~~-~~~~-~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~i~~~G~~~~~k~~~~l 220 (374)
T cd03817 146 YNRCDAVIAPSEKIADLLRE-YGVK-RPIEVIPTGIDLDRFEPVDG--DDERRKLGIPEDE-PVLLYVGRLAKEKNIDFL 220 (374)
T ss_pred hhhCCEEEeccHHHHHHHHh-cCCC-CceEEcCCccchhccCccch--hHHHHhcCCCCCC-eEEEEEeeeecccCHHHH
Confidence 78999999999999999887 6654 56999999999887765433 2335666666555 889999999999999999
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHH
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTV 385 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~ 385 (488)
++++..+.++. ++++++++|+|+..+.+++ +.++|.++|+++++++..+|+.||++++||. .|++|+++
T Consensus 221 ~~~~~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~-~e~~~~~~ 295 (374)
T cd03817 221 IRAFARLLKEE----PDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST-TETQGLVL 295 (374)
T ss_pred HHHHHHHHHhC----CCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc-ccCcChHH
Confidence 99999999887 8999999999987766554 3478999999999999999999999999997 59999999
Q ss_pred HHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHH
Q 011355 386 LEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYE 464 (488)
Q Consensus 386 lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 464 (488)
+|||+||+|||+++.++.. +++.++.+|+++++ +. +++++|.+++++ ++.+++|++++++.+.+.+ ..+++.
T Consensus 296 ~Ea~~~g~PvI~~~~~~~~-~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~ 368 (374)
T cd03817 296 LEAMAAGLPVVAVDAPGLP-DLVADGENGFLFPPGDE-ALAEALLRLLQD-PELRRRLSKNAEESAEKFS----FAKKVE 368 (374)
T ss_pred HHHHHcCCcEEEeCCCChh-hheecCceeEEeCCCCH-HHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 9999999999999999987 89999999999998 55 999999999999 8888999999999997743 666777
Q ss_pred HHHHH
Q 011355 465 RLFLC 469 (488)
Q Consensus 465 ~~~~~ 469 (488)
++|++
T Consensus 369 ~~~~~ 373 (374)
T cd03817 369 KLYEE 373 (374)
T ss_pred HHHhc
Confidence 77764
No 42
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1e-36 Score=298.81 Aligned_cols=375 Identities=15% Similarity=0.099 Sum_probs=251.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC--eEEEEecCCCCCCCC----C---CC------CceEEEec--
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH--ELHIFTASCLNCSFP----T---YP------ISSLYFHL-- 137 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~----~---~~------~~~i~~~~-- 137 (488)
++++|+|+++.. ...||+|+.+...+.+|++.|+ +|.++|...+..... . .+ ...+.+..
T Consensus 32 ~~~~v~f~HP~~---~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~ 108 (463)
T PLN02949 32 RKRAVGFFHPYT---NDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRK 108 (463)
T ss_pred CCcEEEEECCCC---CCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEecccc
Confidence 567999999742 2445999999999999999998 777777553222111 0 00 00111211
Q ss_pred -CCCCccCcc-hhHHHHHHH---HHHhcCCCCCcEEEeCCcc----hHHhhhccCCcEEEeeeCCcchhhhhhhhHhh--
Q 011355 138 -SKPTAAGYL-DQSIVWQQL---QTQNSTGKPFDVIHTESVG----LRHTRARNLTNVVVSWHGIAYETIHSDIIQEL-- 206 (488)
Q Consensus 138 -~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~Dvv~~~~~~----~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~-- 206 (488)
..+...+.+ -....+..+ ....... .|| |++.+.+ ++.....+.| ++..+|...... ++....
T Consensus 109 ~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~-~p~-v~vDt~~~~~~~pl~~~~~~~-v~~yvH~p~~~~---dm~~~v~~ 182 (463)
T PLN02949 109 WIEEETYPRFTMIGQSLGSVYLAWEALCKF-TPL-YFFDTSGYAFTYPLARLFGCK-VVCYTHYPTISS---DMISRVRD 182 (463)
T ss_pred ccccccCCceehHHHHHHHHHHHHHHHHhc-CCC-EEEeCCCcccHHHHHHhcCCc-EEEEEeCCcchH---HHHHHHhh
Confidence 111111111 111111111 1111111 455 5554433 3333333556 999999653221 111110
Q ss_pred -----------hcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCC
Q 011355 207 -----------LRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPD 275 (488)
Q Consensus 207 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~ 275 (488)
.........+.++.+......+ ...+.+|.++++|+++++.+.+.++. ++++.+++||+|...+...
T Consensus 183 ~~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~-~~~~~ad~ii~nS~~t~~~l~~~~~~-~~~i~vvyp~vd~~~~~~~ 260 (463)
T PLN02949 183 RSSMYNNDASIARSFWLSTCKILYYRAFAWMYG-LVGRCAHLAMVNSSWTKSHIEALWRI-PERIKRVYPPCDTSGLQAL 260 (463)
T ss_pred cccccCccchhhccchhHHHHHHHHHHHHHHHH-HHcCCCCEEEECCHHHHHHHHHHcCC-CCCeEEEcCCCCHHHcccC
Confidence 0000001113333333332221 34589999999999999999886665 4588999999987655322
Q ss_pred cccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch------hHHhh----
Q 011355 276 VAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG------ARYRD---- 345 (488)
Q Consensus 276 ~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~------~~~~~---- 345 (488)
+.. -+.++ ..++++||+.++||++.+|+|++++.++.++-.++++|+|+|+++.. +++++
T Consensus 261 ~~~---------~~~~~-~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~ 330 (463)
T PLN02949 261 PLE---------RSEDP-PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKE 330 (463)
T ss_pred Ccc---------ccCCC-CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHH
Confidence 110 01223 57889999999999999999999887532100168999999986421 22332
Q ss_pred --hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeec---CCceeEeCCC
Q 011355 346 --LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG---TDMGYLFSPQ 420 (488)
Q Consensus 346 --l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~---~~~g~l~~~d 420 (488)
+.++|+|+|+++.+++.++|+.||++++||. .|+||++++|||++|+|||+++.||..++++.+ +.+|++++ |
T Consensus 331 l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~-~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~-~ 408 (463)
T PLN02949 331 LGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI-DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT-T 408 (463)
T ss_pred cCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc-cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC-C
Confidence 3578999999999999999999999999996 699999999999999999999999976577765 67899987 9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhcc
Q 011355 421 VESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISND 473 (488)
Q Consensus 421 ~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 473 (488)
+++++++|.++++++++.+++|++++++.+ ++|||+++.+++.+.+++++++
T Consensus 409 ~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 409 VEEYADAILEVLRMRETERLEIAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 999999999999964788899999999999 5599999999999999998773
No 43
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.3e-37 Score=301.69 Aligned_cols=336 Identities=26% Similarity=0.309 Sum_probs=252.5
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQT 157 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 157 (488)
||++++..||+ |.++++.++++.|.++||+|++++.................. ........+........+..
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 73 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELA--RTRYLARSLALLAQALVLAR 73 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccc--chHHHHHHHHHHHHHHHHHH
Confidence 69999998865 267899999999999999999999876433221100000000 00000011111111112222
Q ss_pred HhcCCCCCcEEEeCCcc---hHHhhh---ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 158 QNSTGKPFDVIHTESVG---LRHTRA---RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 158 ~~~~~~~~Dvv~~~~~~---~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
..+.. ++|+||+|... ...+.. .+.| ++.+.|+...... .. . . .....
T Consensus 74 ~~~~~-~~Dii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~----~----~-----~~~~~ 127 (355)
T cd03799 74 ELRRL-GIDHIHAHFGTTPATVAMLASRLGGIP-YSFTAHGKDIFRS-----------PD----A----I-----DLDEK 127 (355)
T ss_pred HHHhc-CCCEEEECCCCchHHHHHHHHHhcCCC-EEEEEeccccccc-----------Cc----h----H-----HHHHH
Confidence 22223 89999998642 111211 2345 8888886422100 00 0 0 11144
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLM 311 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~l 311 (488)
++.+|.++++|+..++.+.+.++.+..++.++|||+|.+.+..... . ..++++.++++|++.+.||++.+
T Consensus 128 ~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~---------~-~~~~~~~i~~~g~~~~~k~~~~l 197 (355)
T cd03799 128 LARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPP---------P-PPGEPLRILSVGRLVEKKGLDYL 197 (355)
T ss_pred HhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccc---------c-ccCCCeEEEEEeeeccccCHHHH
Confidence 6789999999999999999976888899999999999887755430 0 12333789999999999999999
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC-----CC
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA-----QG 380 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~-----eg 380 (488)
++++..+.++. ++++++++|.++..+.+++ +.++|.+.|+++.+++..+|++||++++||..+ ||
T Consensus 198 ~~~~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~ 273 (355)
T cd03799 198 LEALALLKDRG----IDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREG 273 (355)
T ss_pred HHHHHHHhhcC----CCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccC
Confidence 99999998877 8999999999887765554 347899999999999999999999999999743 99
Q ss_pred CChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHH
Q 011355 381 LDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKM 459 (488)
Q Consensus 381 ~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~ 459 (488)
+|++++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++++ ++.+.+|++++++.+.++|||+..
T Consensus 274 ~~~~~~Ea~a~G~Pvi~~~~~~~~-~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~a~~~~~~~~s~~~~ 351 (355)
T cd03799 274 LPVVLMEAMAMGLPVISTDVSGIP-ELVEDGETGLLVPPGDPEALADAIERLLDD-PELRREMGEAGRARVEEEFDIRKQ 351 (355)
T ss_pred ccHHHHHHHHcCCCEEecCCCCcc-hhhhCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999987 89988889999998 999999999999999 888999999999999999999998
Q ss_pred HHH
Q 011355 460 AAA 462 (488)
Q Consensus 460 ~~~ 462 (488)
+++
T Consensus 352 ~~~ 354 (355)
T cd03799 352 AAR 354 (355)
T ss_pred hhc
Confidence 865
No 44
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=4.4e-37 Score=298.06 Aligned_cols=337 Identities=25% Similarity=0.308 Sum_probs=252.0
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEec-----CCCCc-cC-----cc
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHL-----SKPTA-AG-----YL 146 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~-----~~~~~-~~-----~~ 146 (488)
||++++..+|+. ..||+++++.+++++|.++||+|++++.................... ..... .. ..
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDY 79 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhc
Confidence 689999888763 68999999999999999999999999987654433221111111110 00000 00 00
Q ss_pred hhHHHHHHHHHHhcCCCCCcEEEeCCcch------HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHH
Q 011355 147 DQSIVWQQLQTQNSTGKPFDVIHTESVGL------RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAE 220 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~------~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (488)
........+....... +||+||++.... ......++| ++.++|+.+.......
T Consensus 80 ~~~~~~~~~~~~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~-~i~~~hd~~~~~~~~~------------------- 138 (359)
T cd03823 80 DNPAVVAEFARLLEDF-RPDVVHFHHLQGLGVSILRAARDRGIP-IVLTLHDYWLICPRQG------------------- 138 (359)
T ss_pred cCHHHHHHHHHHHHHc-CCCEEEECCccchHHHHHHHHHhcCCC-EEEEEeeeeeecchhh-------------------
Confidence 1111223333333333 899999987321 112233457 9999998543211100
Q ss_pred HHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEe
Q 011355 221 RASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAG 300 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 300 (488)
......|.++++|+...+.+.+ ++.+..++.+++||+|...+..... +.+.++ ++++++|
T Consensus 139 ---------~~~~~~d~ii~~s~~~~~~~~~-~~~~~~~~~vi~n~~~~~~~~~~~~---------~~~~~~-~~i~~~G 198 (359)
T cd03823 139 ---------LFKKGGDAVIAPSRFLLDRYVA-NGLFAEKISVIRNGIDLDRAKRPRR---------APPGGR-LRFGFIG 198 (359)
T ss_pred ---------hhccCCCEEEEeCHHHHHHHHH-cCCCccceEEecCCcChhhcccccc---------CCCCCc-eEEEEEe
Confidence 0112239999999999999988 4545679999999999987654321 123343 8899999
Q ss_pred eeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh---hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC
Q 011355 301 RLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD---LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 301 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~---l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 377 (488)
++.+.||++.++++++.+.+ ++++|+++|.++....... ..++|.++|+++.+++.++|+.||++++||..
T Consensus 199 ~~~~~k~~~~li~~~~~l~~------~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~ 272 (359)
T cd03823 199 QLTPHKGVDLLLEAFKRLPR------GDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIW 272 (359)
T ss_pred cCccccCHHHHHHHHHHHHh------cCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcc
Confidence 99999999999999999875 4899999999876654433 45899999999999999999999999999975
Q ss_pred CCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCH
Q 011355 378 AQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
.||+|++++|||+||+|||+++.++.. +++.++.+|+++++ |+++++++|.+++++ ++.++.+++++++....
T Consensus 273 ~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~---- 346 (359)
T cd03823 273 PENFPLVIREALAAGVPVIASDIGGMA-ELVRDGVNGLLFPPGDAEDLAAALERLIDD-PDLLERLRAGIEPPRSI---- 346 (359)
T ss_pred cCCCChHHHHHHHCCCCEEECCCCCHH-HHhcCCCcEEEECCCCHHHHHHHHHHHHhC-hHHHHHHHHhHHHhhhH----
Confidence 699999999999999999999999987 88888889999999 899999999999998 99999999998887643
Q ss_pred HHHHHHHHHHHH
Q 011355 457 TKMAAAYERLFL 468 (488)
Q Consensus 457 ~~~~~~~~~~~~ 468 (488)
+++++++.++|+
T Consensus 347 ~~~~~~~~~~~~ 358 (359)
T cd03823 347 EDQAEEYLKLYR 358 (359)
T ss_pred HHHHHHHHHHhh
Confidence 899999999885
No 45
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1.1e-37 Score=301.59 Aligned_cols=337 Identities=16% Similarity=0.123 Sum_probs=236.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCCCceE-EEecCCCCccCcchhHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFPTYPISSL-YFHLSKPTAAGYLDQSIVWQ 153 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~ 153 (488)
|||++++..+| ..||+|+++.+++++|.++ ||+|.+++...............+ .+..... ..........
T Consensus 1 mkI~~~~~~~~---~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 74 (359)
T PRK09922 1 MKIAFIGEAVS---GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKL---SFLRRAKHVY 74 (359)
T ss_pred CeeEEeccccc---CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchh---hhhcccHHHH
Confidence 89999987543 4699999999999999999 899999887654221110111100 0000000 0011112233
Q ss_pred HHHHHhcCCCCCcEEEeCCcchHH--hhh---ccCCc-EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHH
Q 011355 154 QLQTQNSTGKPFDVIHTESVGLRH--TRA---RNLTN-VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVE 227 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~~~~~~~--~~~---~~~p~-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (488)
.+.+..++. +||+||+|+..... ... .+.|. ++.+.|.... .. ... ..
T Consensus 75 ~l~~~l~~~-~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-------------~~------~~~-~~----- 128 (359)
T PRK09922 75 NFSKWLKET-QPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLD-------------HK------KHA-EC----- 128 (359)
T ss_pred HHHHHHHhc-CCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCccc-------------cc------chh-hh-----
Confidence 333444443 89999999743211 111 12231 4444453100 00 000 00
Q ss_pred HhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeec--cc
Q 011355 228 EVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLV--KD 305 (488)
Q Consensus 228 ~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~--~~ 305 (488)
..+..+|.++++|+..++.+.+ +|++.+++.++|||+|.+.+..... ..+++++++++||+. +.
T Consensus 129 --~~~~~~d~~i~~S~~~~~~~~~-~~~~~~ki~vi~N~id~~~~~~~~~-----------~~~~~~~i~~~Grl~~~~~ 194 (359)
T PRK09922 129 --KKITCADYHLAISSGIKEQMMA-RGISAQRISVIYNPVEIKTIIIPPP-----------ERDKPAVFLYVGRLKFEGQ 194 (359)
T ss_pred --hhhhcCCEEEEcCHHHHHHHHH-cCCCHHHEEEEcCCCCHHHccCCCc-----------ccCCCcEEEEEEEEecccC
Confidence 1136799999999999999987 7888889999999999654322111 012237889999996 46
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccC--HHHHHHHHHhcCEEEeCCCC
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLD--QTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~--~~~l~~~~~~adv~v~ps~~ 377 (488)
||++.+++++.++. ++++|+++|+|+..+.+++ +.++|+|+|+++ .+++.++|+.+|++|+||.
T Consensus 195 k~~~~l~~a~~~~~-------~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~- 266 (359)
T PRK09922 195 KNVKELFDGLSQTT-------GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSK- 266 (359)
T ss_pred cCHHHHHHHHHhhC-------CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCc-
Confidence 99999999998873 5799999999998776665 347899999874 4889999999999999997
Q ss_pred CCCCChHHHHHHHcCCcEEEeC-CCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCC
Q 011355 378 AQGLDHTVLEAMLSGKPLMATR-LASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFT 455 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~~-~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs 455 (488)
.||||++++||||||+|||+++ .+|.. |++.++.+|+++++ |+++++++|.+++++ ++.+. .++......+|+
T Consensus 267 ~Egf~~~~lEAma~G~Pvv~s~~~~g~~-eiv~~~~~G~lv~~~d~~~la~~i~~l~~~-~~~~~---~~~~~~~~~~~~ 341 (359)
T PRK09922 267 FEGFPMTLLEAMSYGIPCISSDCMSGPR-DIIKPGLNGELYTPGNIDEFVGKLNKVISG-EVKYQ---HDAIPNSIERFY 341 (359)
T ss_pred ccCcChHHHHHHHcCCCEEEeCCCCChH-HHccCCCceEEECCCCHHHHHHHHHHHHhC-cccCC---HHHHHHHHHHhh
Confidence 4999999999999999999999 88877 89999999999998 999999999999999 65331 223333335578
Q ss_pred HHHHHHHHHHHHHHhhc
Q 011355 456 ATKMAAAYERLFLCISN 472 (488)
Q Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (488)
.+++.+++.++|+.+++
T Consensus 342 ~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 342 EVLYFKNLNNALFSKLQ 358 (359)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88899999999988765
No 46
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.9e-37 Score=295.83 Aligned_cols=349 Identities=13% Similarity=0.058 Sum_probs=235.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEecCCCCCCC---------------CC------CCCce
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG-HELHIFTASCLNCSF---------------PT------YPISS 132 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~---------------~~------~~~~~ 132 (488)
++|||++++..|+| ..+|+......++..|+++| |+|+|+.+....... .. .....
T Consensus 3 ~~mrIaivTdt~lP--~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v 80 (462)
T PLN02846 3 KKQHIAIFTTASLP--WMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERI 80 (462)
T ss_pred CCCEEEEEEcCCCC--CCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeE
Confidence 57999999999998 78999999999999999999 799999986532100 00 00111
Q ss_pred EEEecCCCCccCc-c----hhHHHHHHHHHHhcCCCCCcEEEeCCcchHHhh-------hccCCcEEEeeeCCcchhhhh
Q 011355 133 LYFHLSKPTAAGY-L----DQSIVWQQLQTQNSTGKPFDVIHTESVGLRHTR-------ARNLTNVVVSWHGIAYETIHS 200 (488)
Q Consensus 133 i~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~-------~~~~p~~v~~~h~~~~~~~~~ 200 (488)
+.+.......+.. + ........+....... +|||||+++.....+. .+..+ ++.++|.....+.+
T Consensus 81 ~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~-~pDVIHv~tP~~LG~~~~g~~~~~k~~~-vV~tyHT~y~~Y~~- 157 (462)
T PLN02846 81 SFLPKFSIKFYPGKFSTDKRSILPVGDISETIPDE-EADIAVLEEPEHLTWYHHGKRWKTKFRL-VIGIVHTNYLEYVK- 157 (462)
T ss_pred EEecccccccCcccccccccccCChHHHHHHHHhc-CCCEEEEcCchhhhhHHHHHHHHhcCCc-EEEEECCChHHHHH-
Confidence 1111111100011 0 0000112233333333 8999999987654443 12234 67788873322111
Q ss_pred hhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccch
Q 011355 201 DIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGK 280 (488)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~ 280 (488)
..........+.+.+.++... + .+|.++++|+...+ +.+ .+.+..+|||.+.|.+....
T Consensus 158 -------~~~~g~~~~~l~~~~~~~~~r--~--~~d~vi~pS~~~~~-l~~-------~~i~~v~GVd~~~f~~~~~~-- 216 (462)
T PLN02846 158 -------REKNGRVKAFLLKYINSWVVD--I--YCHKVIRLSAATQD-YPR-------SIICNVHGVNPKFLEIGKLK-- 216 (462)
T ss_pred -------HhccchHHHHHHHHHHHHHHH--H--hcCEEEccCHHHHH-Hhh-------CEEecCceechhhcCCCccc--
Confidence 001101112233333333321 1 38999999986655 332 23444589999988765432
Q ss_pred hhhhhhCCCCCC-cEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhC-----CcEEEeC
Q 011355 281 DFKKKFGIPENR-SLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLG-----TNVIVLG 354 (488)
Q Consensus 281 ~~r~~~~i~~~~-~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~-----~~V~~~g 354 (488)
.++.++ +.+. ...++|+||+.++||++.+++|++++.+.. ++++|+|+|+||.++.++++. +...|.|
T Consensus 217 -~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~----~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G 290 (462)
T PLN02846 217 -LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKEL----SGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPG 290 (462)
T ss_pred -HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhC----CCeEEEEECCCccHHHHHHHHHhcCCcEEEECC
Confidence 333333 2332 146889999999999999999999998877 899999999999998877643 1224677
Q ss_pred ccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhc
Q 011355 355 PLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWAD 434 (488)
Q Consensus 355 ~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~ 434 (488)
..+. .++|+.+|+||+||. .|+||++++||||||+|||+++.++ . +++.++.+|++++ |.+++++++.+++.+
T Consensus 291 ~~~~---~~~~~~~DvFv~pS~-~Et~g~v~lEAmA~G~PVVa~~~~~-~-~~v~~~~ng~~~~-~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 291 RDHA---DPLFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPS-N-EFFKQFPNCRTYD-DGKGFVRATLKALAE 363 (462)
T ss_pred CCCH---HHHHHhCCEEEECCC-cccchHHHHHHHHcCCcEEEecCCC-c-ceeecCCceEecC-CHHHHHHHHHHHHcc
Confidence 6443 379999999999997 5999999999999999999999997 4 8899999999997 899999999999986
Q ss_pred CHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 435 GREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
++ ..++.+++ +.|||+.+.+++.++|+-
T Consensus 364 ~~---~~~~~~a~----~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 364 EP---APLTDAQR----HELSWEAATERFLRVADL 391 (462)
T ss_pred Cc---hhHHHHHH----HhCCHHHHHHHHHHHhcc
Confidence 33 22233332 469999999999999974
No 47
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=1e-38 Score=282.24 Aligned_cols=354 Identities=21% Similarity=0.258 Sum_probs=261.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC---CCCceEEEecCCC-CccCcchhHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT---YPISSLYFHLSKP-TAAGYLDQSIVW 152 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~~~ 152 (488)
++|+++++.|.| ..||++.+++.|.+.|.+.||.|.++|-..++...-. .+...++.+.... ...........+
T Consensus 1 ~~i~mVsdff~P--~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~ 78 (426)
T KOG1111|consen 1 SRILMVSDFFYP--STGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDF 78 (426)
T ss_pred CcceeeCccccc--CCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccC
Confidence 478999998876 8999999999999999999999999998765542221 2222222221110 000111111122
Q ss_pred HHHHHHhcCCCCCcEEEeCCcc-------hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHH
Q 011355 153 QQLQTQNSTGKPFDVIHTESVG-------LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKV 225 (488)
Q Consensus 153 ~~~~~~~~~~~~~Dvv~~~~~~-------~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (488)
..++....++ +..+||.|+.. +.+....+.. .+.+-|...... + ....+...+..
T Consensus 79 Pllr~i~lrE-~I~ivhghs~fS~lahe~l~hartMGlk-tVfTdHSlfGfa---d------------~~si~~n~ll~- 140 (426)
T KOG1111|consen 79 PLLRPILLRE-RIEIVHGHSPFSYLAHEALMHARTMGLK-TVFTDHSLFGFA---D------------IGSILTNKLLP- 140 (426)
T ss_pred cccchhhhhh-ceEEEecCChHHHHHHHHHHHHHhcCce-EEEecccccccc---c------------hhhhhhcceee-
Confidence 2333333333 89999999743 2333334445 888888743211 1 00111222111
Q ss_pred HHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccc
Q 011355 226 VEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKD 305 (488)
Q Consensus 226 ~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~ 305 (488)
-.+...|++||+|...++...-+-.+++.++.+|||.++...|.|.+.++ +.++...++.+||+..+
T Consensus 141 ----~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~---------~S~~i~~ivv~sRLvyr 207 (426)
T KOG1111|consen 141 ----LSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK---------PSADIITIVVASRLVYR 207 (426)
T ss_pred ----eeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCcccc---------CCCCeeEEEEEeeeeec
Confidence 34678999999999998876654568899999999999999998865542 34444789999999999
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCC
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQ 379 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~e 379 (488)
||+|.+++++.++.+++ |+++++|+|+||.+..+++ ++++|.++|.++++++.+.|.+.|+|++||+ .|
T Consensus 208 KGiDll~~iIp~vc~~~----p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSl-TE 282 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKH----PEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSL-TE 282 (426)
T ss_pred cchHHHHHHHHHHHhcC----CCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHH-HH
Confidence 99999999999999999 9999999999996544443 6799999999999999999999999999998 69
Q ss_pred CCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHH
Q 011355 380 GLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKM 459 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~ 459 (488)
.|+++++||++||+|||++++||++ |++-++ .-++-+++++++++++++.+.. - ...-....+.+.+.|+|+.+
T Consensus 283 afc~~ivEAaScGL~VVsTrVGGIp-eVLP~d-~i~~~~~~~~dl~~~v~~ai~~-~---~~~p~~~h~~v~~~y~w~dV 356 (426)
T KOG1111|consen 283 AFCMVIVEAASCGLPVVSTRVGGIP-EVLPED-MITLGEPGPDDLVGAVEKAITK-L---RTLPLEFHDRVKKMYSWKDV 356 (426)
T ss_pred HHHHHHHHHHhCCCEEEEeecCCcc-ccCCcc-ceeccCCChHHHHHHHHHHHHH-h---ccCchhHHHHHHHhccHHHH
Confidence 9999999999999999999999999 777555 3333444899999999988875 2 22235556778888999999
Q ss_pred HHHHHHHHHHhhccc
Q 011355 460 AAAYERLFLCISNDE 474 (488)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (488)
+++.+.+|.++.+.+
T Consensus 357 a~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 357 AERTEKVYDRAATTS 371 (426)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999988743
No 48
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.4e-37 Score=310.47 Aligned_cols=281 Identities=22% Similarity=0.271 Sum_probs=218.9
Q ss_pred CCCcEEEeCCcchH---H---hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCcc
Q 011355 163 KPFDVIHTESVGLR---H---TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYA 236 (488)
Q Consensus 163 ~~~Dvv~~~~~~~~---~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 236 (488)
.++|++|+|+.+.. . ....++| ++++.|+........++.... .........+.+...... ...++++|
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p-~I~t~Hg~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~l~--~~~~~~ad 246 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTP-FLLTEHGIYTRERKIELLQAD--WEMSYFRRLWIRFFESLG--RLAYQAAD 246 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCC-EEEecCCccHHHHHHHHHhcc--cchHHHHHHHHHHHHHHH--HHHHHhCC
Confidence 37999999985432 1 2234567 999999975432111111100 001111111222222221 24678999
Q ss_pred EEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHH
Q 011355 237 HHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALK 316 (488)
Q Consensus 237 ~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~ 316 (488)
.|+++|+..++...+ +|.+++|+.+||||+|.+.+.+.... ..+++ +++++++||+.+.||++.+++|++
T Consensus 247 ~Ii~~s~~~~~~~~~-~g~~~~ki~vIpNgid~~~f~~~~~~--------~~~~~-~~~i~~vGrl~~~Kg~~~li~a~~ 316 (475)
T cd03813 247 RITTLYEGNRERQIE-DGADPEKIRVIPNGIDPERFAPARRA--------RPEKE-PPVVGLIGRVVPIKDIKTFIRAAA 316 (475)
T ss_pred EEEecCHHHHHHHHH-cCCCHHHeEEeCCCcCHHHcCCcccc--------ccCCC-CcEEEEEeccccccCHHHHHHHHH
Confidence 999999999988766 78888999999999999877654321 11233 388999999999999999999999
Q ss_pred HhHhhccCCCCCeEEEEEeCCCch----hHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHH
Q 011355 317 QLLAENDTFRRSTVFLVAGDGPWG----ARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVL 386 (488)
Q Consensus 317 ~l~~~~~~~~~~~~l~ivG~g~~~----~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~l 386 (488)
.+.++. |+++++|+|+++.. +++++ +.++|+|+| .+++.++|+.+|++|+||. .||+|++++
T Consensus 317 ~l~~~~----p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~-~Eg~p~~vl 388 (475)
T cd03813 317 IVRKKI----PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSI-SEGQPLVIL 388 (475)
T ss_pred HHHHhC----CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCch-hhcCChHHH
Confidence 999888 89999999988532 22222 347999999 5689999999999999997 599999999
Q ss_pred HHHHcCCcEEEeCCCCcccceeec------CCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHH
Q 011355 387 EAMLSGKPLMATRLASIVGSVIVG------TDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKM 459 (488)
Q Consensus 387 EAma~G~PVI~~~~~~~~~e~v~~------~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~ 459 (488)
|||+||+|||+|+.|+.. |++.+ |.+|+++++ |+++++++|.+++++ ++.+++|++++++++.+.|+|+++
T Consensus 389 EAma~G~PVVatd~g~~~-elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~-~~~~~~~~~~a~~~v~~~~s~~~~ 466 (475)
T cd03813 389 EAMAAGIPVVATDVGSCR-ELIEGADDEALGPAGEVVPPADPEALARAILRLLKD-PELRRAMGEAGRKRVERYYTLERM 466 (475)
T ss_pred HHHHcCCCEEECCCCChH-HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998 88887 569999999 999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011355 460 AAAYERLFL 468 (488)
Q Consensus 460 ~~~~~~~~~ 468 (488)
+++|.++|+
T Consensus 467 ~~~y~~lY~ 475 (475)
T cd03813 467 IDSYRRLYL 475 (475)
T ss_pred HHHHHHHhC
Confidence 999999984
No 49
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=2.1e-36 Score=294.25 Aligned_cols=339 Identities=22% Similarity=0.251 Sum_probs=245.9
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQT 157 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 157 (488)
||+++++. ++ ..||+++++.+++++|.+.||+|++++....................... ..... ..+..
T Consensus 1 kI~~v~~~-~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~ 70 (366)
T cd03822 1 RIALVSPY-PP--RKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLD---NPLDY----RRAAR 70 (366)
T ss_pred CeEEecCC-CC--CCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecC---CchhH----HHHHH
Confidence 78999864 43 47999999999999999999999999877644332221110001111110 11111 22222
Q ss_pred HhcCCCCCcEEEeCCc------chHHhh-----hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHH
Q 011355 158 QNSTGKPFDVIHTESV------GLRHTR-----ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVV 226 (488)
Q Consensus 158 ~~~~~~~~Dvv~~~~~------~~~~~~-----~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
..... +||+||++.. ...... ..+.| ++.+.|+.... .. ......+.+
T Consensus 71 ~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~-------------~~----~~~~~~~~~-- 129 (366)
T cd03822 71 AIRLS-GPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIP-VVVTLHTVLLH-------------EP----RPGDRALLR-- 129 (366)
T ss_pred HHhhc-CCCEEEEeeccccccchhhHHHHHHHhhcCCC-EEEEEecCCcc-------------cc----chhhhHHHH--
Confidence 22222 8999999751 111111 14556 99999995110 00 011111111
Q ss_pred HHhhhcCCccEEEEcC-hhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccc
Q 011355 227 EEVKFFPKYAHHVATS-DHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKD 305 (488)
Q Consensus 227 ~~~~~~~~~d~ii~~S-~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~ 305 (488)
..++.+|.++++| +...+.+.. . ...++.++|||+|...+...... ++...+.++ ++++++|++.+.
T Consensus 130 ---~~~~~~d~ii~~s~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~-~~i~~~G~~~~~ 197 (366)
T cd03822 130 ---LLLRRADAVIVMSSELLRALLLR-A--YPEKIAVIPHGVPDPPAEPPESL-----KALGGLDGR-PVLLTFGLLRPY 197 (366)
T ss_pred ---HHHhcCCEEEEeeHHHHHHHHhh-c--CCCcEEEeCCCCcCcccCCchhh-----HhhcCCCCC-eEEEEEeeccCC
Confidence 4467899999996 333333322 1 14799999999998766543211 233334444 789999999999
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhH---------Hhh--hCCcEEEeCc-cCHHHHHHHHHhcCEEEe
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGAR---------YRD--LGTNVIVLGP-LDQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~---------~~~--l~~~V~~~g~-v~~~~l~~~~~~adv~v~ 373 (488)
||++.+++|+..+.++. ++++|+++|++..... +++ +.++|.|.|. ++.+++.++|+.||++++
T Consensus 198 K~~~~ll~a~~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ 273 (366)
T cd03822 198 KGLELLLEALPLLVAKH----PDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVL 273 (366)
T ss_pred CCHHHHHHHHHHHHhhC----CCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEe
Confidence 99999999999999888 8999999998754321 223 3479999987 999999999999999999
Q ss_pred CCCCCC--CCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011355 374 PTLRAQ--GLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRG 450 (488)
Q Consensus 374 ps~~~e--g~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~ 450 (488)
||. .| ++|++++|||++|+|||+++.++ . +.+.++.+|+++++ |+++++++|.+++++ ++.+.+|++++++.+
T Consensus 274 ps~-~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~-~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~ 349 (366)
T cd03822 274 PYR-SADQTQSGVLAYAIGFGKPVISTPVGH-A-EEVLDGGTGLLVPPGDPAALAEAIRRLLAD-PELAQALRARAREYA 349 (366)
T ss_pred ccc-ccccccchHHHHHHHcCCCEEecCCCC-h-heeeeCCCcEEEcCCCHHHHHHHHHHHHcC-hHHHHHHHHHHHHHH
Confidence 997 58 99999999999999999999999 6 66788889999998 999999999999998 899999999999999
Q ss_pred hhhCCHHHHHHHHHHHHH
Q 011355 451 LNLFTATKMAAAYERLFL 468 (488)
Q Consensus 451 ~~~fs~~~~~~~~~~~~~ 468 (488)
.+ |||+++++++.++|+
T Consensus 350 ~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 350 RA-MSWERVAERYLRLLA 366 (366)
T ss_pred hh-CCHHHHHHHHHHHhC
Confidence 88 999999999999873
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=3e-36 Score=295.41 Aligned_cols=361 Identities=24% Similarity=0.261 Sum_probs=261.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------CCCceEEE---ecCCCCccCc---
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT------YPISSLYF---HLSKPTAAGY--- 145 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~i~~---~~~~~~~~~~--- 145 (488)
||++++..+|+ ..||.+.++..++++|+++||+|++++.......... .....+.+ ..........
T Consensus 1 kIl~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (394)
T cd03794 1 KILILSQYFPP--ELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKR 78 (394)
T ss_pred CEEEEecccCC--ccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHH
Confidence 68999998877 3499999999999999999999999998764443322 11122222 2211111011
Q ss_pred -c-hhHHHHHHHHHHhcCCCCCcEEEeCCcc----hH-Hhhh--ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHH
Q 011355 146 -L-DQSIVWQQLQTQNSTGKPFDVIHTESVG----LR-HTRA--RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAY 216 (488)
Q Consensus 146 -~-~~~~~~~~~~~~~~~~~~~Dvv~~~~~~----~~-~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (488)
. .....+...........+||+||++... .. .... .+.| +++.+|+.+........ .........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~-----~~~~~~~~~ 152 (394)
T cd03794 79 LLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAP-FVLEVRDLWPESAVALG-----LLKNGSLLY 152 (394)
T ss_pred HHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCC-EEEEehhhcchhHHHcc-----CccccchHH
Confidence 0 1111122222222122389999999721 11 1111 2456 89999986543221110 001101101
Q ss_pred HHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEE
Q 011355 217 ALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVL 296 (488)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i 296 (488)
.+...+. ...++.+|.++++|+...+.+.. ++.+..++.++|||+|...+........ +++.....+. +++
T Consensus 153 ~~~~~~~-----~~~~~~~d~vi~~s~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i 223 (394)
T cd03794 153 RLLRKLE-----RLIYRRADAIVVISPGMREYLVR-RGVPPEKISVIPNGVDLELFKPPPADES--LRKELGLDDK-FVV 223 (394)
T ss_pred HHHHHHH-----HHHHhcCCEEEEECHHHHHHHHh-cCCCcCceEEcCCCCCHHHcCCccchhh--hhhccCCCCc-EEE
Confidence 2222222 24578999999999999999984 7788899999999999876655432211 3333334444 899
Q ss_pred EEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh-----hCCcEEEeCccCHHHHHHHHHhcCEE
Q 011355 297 GMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD-----LGTNVIVLGPLDQTRLAMFYNAIDIF 371 (488)
Q Consensus 297 ~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~-----l~~~V~~~g~v~~~~l~~~~~~adv~ 371 (488)
+++|++.+.||++.+++++..+.+. ++++++++|+|+..+.+++ ..++|.+.|+++.+++.++|+.||++
T Consensus 224 ~~~G~~~~~k~~~~l~~~~~~l~~~-----~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~ 298 (394)
T cd03794 224 LYAGNIGRAQGLDTLLEAAALLKDR-----PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVG 298 (394)
T ss_pred EEecCcccccCHHHHHHHHHHHhhc-----CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCee
Confidence 9999999999999999999998753 4899999999887766554 12789999999999999999999999
Q ss_pred EeCCCCCCC-----CChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011355 372 VNPTLRAQG-----LDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLV 445 (488)
Q Consensus 372 v~ps~~~eg-----~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~ 445 (488)
++|+.. |+ +|++++|||++|+|||+++.++.. +.+.++++|+++++ |+++++++|.+++++ ++.+++++++
T Consensus 299 i~~~~~-~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~ 375 (394)
T cd03794 299 LVPLKP-GPAFEGVSPSKLFEYMAAGKPVLASVDGESA-ELVEEAGAGLVVPPGDPEALAAAILELLDD-PEERAEMGEN 375 (394)
T ss_pred EEeccC-cccccccCchHHHHHHHCCCcEEEecCCCch-hhhccCCcceEeCCCCHHHHHHHHHHHHhC-hHHHHHHHHH
Confidence 999974 54 488899999999999999999988 88888899999999 999999999999988 9999999999
Q ss_pred HHHHHhhhCCHHHHHHHH
Q 011355 446 ARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 446 a~~~~~~~fs~~~~~~~~ 463 (488)
+++++.++|||+.++++|
T Consensus 376 ~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 376 GRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHhhcHHHHHHhc
Confidence 999999899999999876
No 51
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=8e-36 Score=292.40 Aligned_cols=360 Identities=15% Similarity=0.089 Sum_probs=241.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCC---------C-CC---CCCceEEEe-c---C
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCS---------F-PT---YPISSLYFH-L---S 138 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~---------~-~~---~~~~~i~~~-~---~ 138 (488)
-|+|+++. ....||+||.+...+.+|++. ||+|+++|....... . .. .....+.+. . .
T Consensus 2 ~~~f~hp~---~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~ 78 (419)
T cd03806 2 TVGFFHPY---CNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLV 78 (419)
T ss_pred eEEEECCC---CCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeee
Confidence 46788864 334459999999999999998 899999999865532 1 11 122222221 1 1
Q ss_pred CCCccCc-chhH----HHHHHHHHHhcCCCCCcEEEeCC-cch--HHhh-hccCCcEEEeeeCCcchhhhhhhhHhh-hc
Q 011355 139 KPTAAGY-LDQS----IVWQQLQTQNSTGKPFDVIHTES-VGL--RHTR-ARNLTNVVVSWHGIAYETIHSDIIQEL-LR 208 (488)
Q Consensus 139 ~~~~~~~-~~~~----~~~~~~~~~~~~~~~~Dvv~~~~-~~~--~~~~-~~~~p~~v~~~h~~~~~~~~~~~~~~~-~~ 208 (488)
.+...+. .... ..+..+..... . +|||++.++ ... +... ..+.| ++..+|- +... .+..... .+
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~~~~~-~-~pDv~i~~~g~~~~~~~~~~~~~~~-~i~y~h~-P~~~--~d~l~~~~~~ 152 (419)
T cd03806 79 EASTYPRFTLLGQALGSMILGLEALLK-L-VPDIFIDTMGYPFTYPLVRLLGGCP-VGAYVHY-PTIS--TDMLQKVRSR 152 (419)
T ss_pred ccccCCceeeHHHHHHHHHHHHHHHHh-c-CCCEEEEcCCcccHHHHHHHhcCCe-EEEEecC-Ccch--HHHHHHHhhc
Confidence 1111111 1111 12222222222 2 799998886 222 2211 12456 8999992 2111 0111100 00
Q ss_pred C----------CCC--hhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCc
Q 011355 209 T----------PEE--PQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDV 276 (488)
Q Consensus 209 ~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~ 276 (488)
. ... ...+.++.++..... ...++.+|.++++|++.++.+.+.++. ..++.+|+||+|.+.+.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~k~~y~~~~~~~~-~~~~~~aD~ii~~S~~~~~~~~~~~~~-~~~~~vi~~gvd~~~~~~~~ 230 (419)
T cd03806 153 EASYNNSATIARSPVLSKAKLLYYRLFAFLY-GLAGSFADVVMVNSTWTRNHIRSLWKR-NTKPSIVYPPCDVEELLKLP 230 (419)
T ss_pred cccccCccchhccchHHHHHHHHHHHHHHHH-HHHhhcCCEEEECCHHHHHHHHHHhCc-CCCcEEEcCCCCHHHhcccc
Confidence 0 000 122334433333332 246799999999999999999986654 35899999999987665432
Q ss_pred ccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccC-CCCCeEEEEEeCCCc------hhHHhh----
Q 011355 277 AMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDT-FRRSTVFLVAGDGPW------GARYRD---- 345 (488)
Q Consensus 277 ~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~-~~~~~~l~ivG~g~~------~~~~~~---- 345 (488)
.. ...++ .+++++||+.+.||++.+++|++++.+..++ ..++++|+|+|++.. .+.+++
T Consensus 231 ~~---------~~~~~-~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~ 300 (419)
T cd03806 231 LD---------EKTRE-NQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKE 300 (419)
T ss_pred cc---------cccCC-cEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHH
Confidence 10 11233 6899999999999999999999999887610 001499999998642 223332
Q ss_pred --hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceee---cCCceeEeCCC
Q 011355 346 --LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIV---GTDMGYLFSPQ 420 (488)
Q Consensus 346 --l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~---~~~~g~l~~~d 420 (488)
+.++|+|+|.++.+++..+|+.||++|+||. .|+||++++|||+||+|||+++.+|..++++. ++.+|++++ |
T Consensus 301 l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~-~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~-d 378 (419)
T cd03806 301 LGLEDKVEFVVNAPFEELLEELSTASIGLHTMW-NEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS-T 378 (419)
T ss_pred hCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc-cCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC-C
Confidence 3479999999999999999999999999997 59999999999999999999999886557887 899999987 9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHH
Q 011355 421 VESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAA 461 (488)
Q Consensus 421 ~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 461 (488)
+++++++|.++++++++.++.+ .++++.+.++||++.+.+
T Consensus 379 ~~~la~ai~~ll~~~~~~~~~~-~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 379 AEEYAEAIEKILSLSEEERLRI-RRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHhhCHHHhcc
Confidence 9999999999999845555555 555555678899998753
No 52
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=5e-37 Score=297.98 Aligned_cols=335 Identities=19% Similarity=0.260 Sum_probs=239.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-CCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-YPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
||+++++.+ ..||.++++.+++++|.+.||+|++++.......... ....++.+..... ...........+.
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 73 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPA---RKKNPLKYFKKLY 73 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecC---CCccHHHHHHHHH
Confidence 689998755 6799999999999999999999999998764421111 0001111111111 1112222223333
Q ss_pred HHhcCCCCCcEEEeCCcch---HHhhh--ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 157 TQNSTGKPFDVIHTESVGL---RHTRA--RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~---~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
...... +||+||+|+... ..+.. ...|..+...|+...... ........ + ..+...
T Consensus 74 ~~~~~~-~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~---~-~~~~~~ 134 (358)
T cd03812 74 KLIKKN-KYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHD--------------KKKKILKY---K-VLRKLI 134 (358)
T ss_pred HHHhcC-CCCEEEEeCcchhHHHHHHHhhCCCCeEEEEecccccccc--------------ccchhhHH---H-HHHHHH
Confidence 333333 899999997532 22222 234535666776432210 00001100 1 111134
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLM 311 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~l 311 (488)
.+.+|.++++|+...+.+.+. ....++.+||||+|.+.+......+.. +++.+...++ ++|+++||+.+.||++.+
T Consensus 135 ~~~~~~~i~~s~~~~~~~~~~--~~~~~~~vi~ngvd~~~~~~~~~~~~~-~~~~~~~~~~-~~i~~vGr~~~~Kg~~~l 210 (358)
T cd03812 135 NRLATDYLACSEEAGKWLFGK--VKNKKFKVIPNGIDLEKFIFNEEIRKK-RRELGILEDK-FVIGHVGRFSEQKNHEFL 210 (358)
T ss_pred HhcCCEEEEcCHHHHHHHHhC--CCcccEEEEeccCcHHHcCCCchhhhH-HHHcCCCCCC-EEEEEEeccccccChHHH
Confidence 678999999999999988774 467899999999999877654433222 5556665555 899999999999999999
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHH
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTV 385 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~ 385 (488)
++|+..+.+++ ++++++|+|+|+..+.+++ +.++|.++|+ .+++.++|+.||++|+||. .||+|+++
T Consensus 211 i~a~~~l~~~~----~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~-~E~~~~~~ 283 (358)
T cd03812 211 IEIFAELLKKN----PNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSL-YEGLPLVL 283 (358)
T ss_pred HHHHHHHHHhC----CCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEeccc-ccCCCHHH
Confidence 99999999888 8999999999987765554 3478999999 6689999999999999997 59999999
Q ss_pred HHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 011355 386 LEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLN 452 (488)
Q Consensus 386 lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~ 452 (488)
+|||++|+|||+++.++.. +++.+ +.|++..+ ++++++++|.+++++ ++.++.++.++......
T Consensus 284 lEAma~G~PvI~s~~~~~~-~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~-~~~~~~~~~~~~~~~~~ 348 (358)
T cd03812 284 IEAQASGLPCILSDTITKE-VDLTD-LVKFLSLDESPEIWAEEILKLKSE-DRRERSSESIKKKGLDA 348 (358)
T ss_pred HHHHHhCCCEEEEcCCchh-hhhcc-CccEEeCCCCHHHHHHHHHHHHhC-cchhhhhhhhhhccchh
Confidence 9999999999999999988 77777 45666655 789999999999999 88888888777666544
No 53
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.1e-36 Score=307.03 Aligned_cols=378 Identities=13% Similarity=0.094 Sum_probs=249.2
Q ss_pred CCceEEEEEecCC-------CCCCCCCcHHHHHHHHH--------HHHHHCCCeEE----EEecCCCCCCCC--------
Q 011355 74 LKLLKIALFVKKW-------PHRSHAGGLERHALTLH--------LALAKRGHELH----IFTASCLNCSFP-------- 126 (488)
Q Consensus 74 ~~~mkIl~i~~~~-------p~~~~~gG~~~~~~~l~--------~~L~~~G~~V~----v~~~~~~~~~~~-------- 126 (488)
|+-|||++++.+- .-....||...|+.+++ +.|+++||+|+ |+|....+....
T Consensus 277 p~~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~ 356 (815)
T PLN00142 277 PMVFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEK 356 (815)
T ss_pred hHhHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCccee
Confidence 3458999998643 22346788888887655 67778899874 888765433211
Q ss_pred CCCCceEEE---ecCCCC-----c---cCcchhHHHH-HHHHHHh-c-CCCCCcEEEeCCcc-----hHHhhhccCCcEE
Q 011355 127 TYPISSLYF---HLSKPT-----A---AGYLDQSIVW-QQLQTQN-S-TGKPFDVIHTESVG-----LRHTRARNLTNVV 187 (488)
Q Consensus 127 ~~~~~~i~~---~~~~~~-----~---~~~~~~~~~~-~~~~~~~-~-~~~~~Dvv~~~~~~-----~~~~~~~~~p~~v 187 (488)
....++..+ +..... + ...|.+...+ ..+.... . ...+||+||.|.+. .......++| .+
T Consensus 357 v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP-~v 435 (815)
T PLN00142 357 VSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVT-QC 435 (815)
T ss_pred ccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCC-EE
Confidence 122222333 322210 0 0011111111 1111111 1 11269999999632 2233334789 99
Q ss_pred EeeeCCcchhh-hhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHH-------HHHH-------
Q 011355 188 VSWHGIAYETI-HSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDV-------LKRI------- 252 (488)
Q Consensus 188 ~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~-------~~~~------- 252 (488)
.+.|....... +++.... .. ...+....++..+...++.||.||+.|...... +...
T Consensus 436 ~T~HsL~k~K~~~~~~~~~---~~-----e~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~ 507 (815)
T PLN00142 436 TIAHALEKTKYPDSDIYWK---KF-----DDKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPG 507 (815)
T ss_pred EEcccchhhhccccCCccc---cc-----chhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccch
Confidence 99997532211 1110000 00 111122222333445678899999988666531 2121
Q ss_pred -----hcC--CCCcEEEecCCccCCCcCCCcccc-----------------hhhhhhhCCC-CCCcEEEEEEeeeccccC
Q 011355 253 -----YMI--PEERVHVILNGVDEEVFKPDVAMG-----------------KDFKKKFGIP-ENRSLVLGMAGRLVKDKG 307 (488)
Q Consensus 253 -----~g~--~~~~i~vi~ngvd~~~~~~~~~~~-----------------~~~r~~~~i~-~~~~~~i~~~Grl~~~Kg 307 (488)
.|+ ...++.|||+|+|...|.+..... ...++.+|+. +.++.+|+++||+.+.||
T Consensus 508 L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KG 587 (815)
T PLN00142 508 LYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKN 587 (815)
T ss_pred hhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCC
Confidence 122 255899999999998776432111 1124556652 222367889999999999
Q ss_pred hHHHHHHHHHhHhhccCCCCCeEEEEEeCCC------chh------HHhh------hCCcEEEeCcc----CHHHHHHHH
Q 011355 308 HPLMFEALKQLLAENDTFRRSTVFLVAGDGP------WGA------RYRD------LGTNVIVLGPL----DQTRLAMFY 365 (488)
Q Consensus 308 ~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~------~~~------~~~~------l~~~V~~~g~v----~~~~l~~~~ 365 (488)
++.+++|+.++.+.. ++++|+|+|++. ..+ .+.+ +.++|.|+|.. +.+++..++
T Consensus 588 id~LIeA~a~l~~l~----~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~i 663 (815)
T PLN00142 588 LTGLVEWYGKNKRLR----ELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYI 663 (815)
T ss_pred HHHHHHHHHHHHHhC----CCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHH
Confidence 999999999887766 789999999862 111 1211 34789998853 346777777
Q ss_pred H-hcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHH----hcCHHHH
Q 011355 366 N-AIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIW----ADGREVL 439 (488)
Q Consensus 366 ~-~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll----~~~~~~~ 439 (488)
+ .+|+||+||. .|+||++++|||+||+|||+|+.||.. |+|.++.+|+++++ |+++++++|.+++ .| ++.+
T Consensus 664 adaaDVfVlPS~-~EgFGLvvLEAMA~GlPVVATdvGG~~-EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~D-p~lr 740 (815)
T PLN00142 664 ADTKGAFVQPAL-YEAFGLTVVEAMTCGLPTFATCQGGPA-EIIVDGVSGFHIDPYHGDEAANKIADFFEKCKED-PSYW 740 (815)
T ss_pred HhhCCEEEeCCc-ccCCCHHHHHHHHcCCCEEEcCCCCHH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 7 4799999997 599999999999999999999999998 99999999999999 9999999998754 56 9999
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 011355 440 EKKGLVARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 440 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
++|+++|++++.++|||+.+++++.++.
T Consensus 741 ~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 741 NKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 54
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=8.6e-36 Score=290.22 Aligned_cols=355 Identities=28% Similarity=0.378 Sum_probs=266.0
Q ss_pred EEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCc-------eEEEecCCCCccCcchhHHH
Q 011355 79 IALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPIS-------SLYFHLSKPTAAGYLDQSIV 151 (488)
Q Consensus 79 Il~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~ 151 (488)
|++++..+|+. ..||.++++..++++|.+.||+|++++.............. ....................
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLA 79 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHH
Confidence 57888888763 47999999999999999999999999987644432221000 00000000011122233334
Q ss_pred HHHHHHHhc--CCCCCcEEEeCCcchH----Hhhh--ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHH
Q 011355 152 WQQLQTQNS--TGKPFDVIHTESVGLR----HTRA--RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERAS 223 (488)
Q Consensus 152 ~~~~~~~~~--~~~~~Dvv~~~~~~~~----~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
+..+..... .. +||+|+++..... .... .++| ++...|+........ ........
T Consensus 80 ~~~~~~~l~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~---------------~~~~~~~~ 142 (377)
T cd03798 80 ARALLKLLKLKRF-RPDLIHAHFAYPDGFAAALLKRKLGIP-LVVTLHGSDVNLLPR---------------KRLLRALL 142 (377)
T ss_pred HHHHHHHHhcccC-CCCEEEEeccchHHHHHHHHHHhcCCC-EEEEeecchhcccCc---------------hhhHHHHH
Confidence 444444443 33 8999999863321 1111 2346 899999864432111 01111111
Q ss_pred HHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeec
Q 011355 224 KVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLV 303 (488)
Q Consensus 224 ~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~ 303 (488)
...++++|.++++|+..++.+.+.+ .+..++.+++||+|...+........ ++.+...++ +.++++|++.
T Consensus 143 -----~~~~~~~d~ii~~s~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~i~~~g~~~ 212 (377)
T cd03798 143 -----RRALRRADAVIAVSEALADELKALG-IDPEKVTVIPNGVDTERFSPADRAEA---RKLGLPEDK-KVILFVGRLV 212 (377)
T ss_pred -----HHHHhcCCeEEeCCHHHHHHHHHhc-CCCCceEEcCCCcCcccCCCcchHHH---HhccCCCCc-eEEEEeccCc
Confidence 1456889999999999999999854 67889999999999987765433211 333333444 8899999999
Q ss_pred cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC
Q 011355 304 KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 304 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 377 (488)
+.||++.+++++..+.++. ++++++++|.++..+.+++ +.++|.+.|+++++++.++|+.||++++||..
T Consensus 213 ~~k~~~~li~~~~~~~~~~----~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~ 288 (377)
T cd03798 213 PRKGIDYLIEALARLLKKR----PDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLR 288 (377)
T ss_pred cccCHHHHHHHHHHHHhcC----CCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhh
Confidence 9999999999999998877 8999999999887665544 34789999999999999999999999999975
Q ss_pred CCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCH
Q 011355 378 AQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
|++|++++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++++ ++. +++.++++.+.++|+|
T Consensus 289 -~~~~~~~~Ea~~~G~pvI~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~--~~~~~~~~~~~~~~s~ 363 (377)
T cd03798 289 -EGFGLVLLEAMACGLPVVATDVGGIP-EIITDGENGLLVPPGDPEALAEAILRLLAD-PWL--RLGRAARRRVAERFSW 363 (377)
T ss_pred -ccCChHHHHHHhcCCCEEEecCCChH-HHhcCCcceeEECCCCHHHHHHHHHHHhcC-cHH--HHhHHHHHHHHHHhhH
Confidence 99999999999999999999999987 88999999999999 999999999999998 665 7888999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 011355 457 TKMAAAYERLFLCI 470 (488)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (488)
+.+++++.++|+++
T Consensus 364 ~~~~~~~~~~~~~l 377 (377)
T cd03798 364 ENVAERLLELYREV 377 (377)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998763
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=1.6e-35 Score=285.27 Aligned_cols=335 Identities=21% Similarity=0.231 Sum_probs=244.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCc-cCcchhHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTA-AGYLDQSIVWQQLQ 156 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~ 156 (488)
||++++..+.+ .||.++.+..++++|.+.||+|++++....... .......+.+....... ............+.
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGEPP-FYELDPKIKVIDLGDKRDSKLLARFKKLRRLR 76 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCC-ccccCCccceeecccccccchhccccchHHHH
Confidence 68899876532 799999999999999999999999998775411 11111112111111000 00111111222233
Q ss_pred HHhcCCCCCcEEEeCCcc---hHHhhhccC-CcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhc
Q 011355 157 TQNSTGKPFDVIHTESVG---LRHTRARNL-TNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFF 232 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~---~~~~~~~~~-p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (488)
...+.. +||+|+++... +......+. | ++.+.|+....... ...... .+...+
T Consensus 77 ~~l~~~-~~d~i~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~----------------~~~~~~-----~~~~~~ 133 (348)
T cd03820 77 KLLKNN-KPDVVISFLTSLLTFLASLGLKIVK-LIVSEHNSPDAYKK----------------RLRRLL-----LRRLLY 133 (348)
T ss_pred Hhhccc-CCCEEEEcCchHHHHHHHHhhcccc-EEEecCCCccchhh----------------hhHHHH-----HHHHHH
Confidence 333333 89999999754 222333333 5 88888875322110 000000 122567
Q ss_pred CCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHH
Q 011355 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMF 312 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll 312 (488)
+.+|.++++|+..+... .+.+..++.++|||++...+... .+.++ ..++++|++.+.||++.++
T Consensus 134 ~~~d~ii~~s~~~~~~~---~~~~~~~~~vi~~~~~~~~~~~~------------~~~~~-~~i~~~g~~~~~K~~~~l~ 197 (348)
T cd03820 134 RRADAVVVLTEEDRALY---YKKFNKNVVVIPNPLPFPPEEPS------------SDLKS-KRILAVGRLVPQKGFDLLI 197 (348)
T ss_pred hcCCEEEEeCHHHHHHh---hccCCCCeEEecCCcChhhcccc------------CCCCC-cEEEEEEeeccccCHHHHH
Confidence 89999999999987222 34567899999999998765433 01233 7889999999999999999
Q ss_pred HHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHH
Q 011355 313 EALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVL 386 (488)
Q Consensus 313 ~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~l 386 (488)
+++..+.+.. ++++|+++|+++..+.+++ +.++|.+.|. .+++..+|+.||++++||.. ||+|++++
T Consensus 198 ~~~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~-e~~~~~~~ 270 (348)
T cd03820 198 EAWAKIAKKH----PDWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRF-EGFPMVLL 270 (348)
T ss_pred HHHHHHHhcC----CCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccc-cccCHHHH
Confidence 9999998877 8999999999887766553 3478999998 67999999999999999975 99999999
Q ss_pred HHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHH
Q 011355 387 EAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYE 464 (488)
Q Consensus 387 EAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 464 (488)
|||++|+|||+++.++..++++.++.+|+++++ |+++++++|.+++++ ++.+++|++++++.+ ++|+|++++++|.
T Consensus 271 Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 271 EAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED-EELRKRMGANARESA-ERFSIENIIKQWE 347 (348)
T ss_pred HHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH-HHhCHHHHHHHhc
Confidence 999999999999987655467777779999998 999999999999998 999999999997766 5699999998875
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=2.8e-35 Score=284.97 Aligned_cols=343 Identities=24% Similarity=0.322 Sum_probs=253.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC-CCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS-FPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
||++++. ..||.++++..++++|.+.||+|++++....... ....+.....+..... ....+.....+..+.
T Consensus 1 kIl~i~~------~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 73 (359)
T cd03808 1 KILHIVT------VDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR-GINPFKDLKALLRLY 73 (359)
T ss_pred CeeEEEe------cchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc-ccChHhHHHHHHHHH
Confidence 6888986 3689999999999999999999999998765442 1112222222222110 011222222333344
Q ss_pred HHhcCCCCCcEEEeCCcch---HHhhh--ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 157 TQNSTGKPFDVIHTESVGL---RHTRA--RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~---~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
...+.. +||+||+++... ..... ...+.++...|+.......... .......+.+ ..
T Consensus 74 ~~~~~~-~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------~~~~~~~~~~-----~~ 135 (359)
T cd03808 74 RLLRKE-RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSGGL------------KRRLYLLLER-----LA 135 (359)
T ss_pred HHHHhc-CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhccchh------------HHHHHHHHHH-----HH
Confidence 444333 899999986421 11111 2334478888875432211110 1122222222 34
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCC-CCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIP-EERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPL 310 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~-~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ 310 (488)
++.+|.++++|+...+.+.+.++.+ ..++.++++|+|...+...... .+.+ +++++++|++.+.||++.
T Consensus 136 ~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~i~~~G~~~~~k~~~~ 205 (359)
T cd03808 136 LRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP---------IPED-DPVFLFVARLLKDKGIDE 205 (359)
T ss_pred HhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc---------cCCC-CcEEEEEeccccccCHHH
Confidence 6788999999999999999855443 4577788899998776554321 1223 388999999999999999
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHh-----h--hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCCh
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGPWGARYR-----D--LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDH 383 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~-----~--l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~ 383 (488)
+++++..+.+++ ++++|+++|.++...... + ..++|.+.|+ .+++.++|+.||++++||.. ||+|+
T Consensus 206 li~~~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps~~-e~~~~ 278 (359)
T cd03808 206 LLEAARILKAKG----PNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPSYR-EGLPR 278 (359)
T ss_pred HHHHHHHHHhcC----CCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEecCcc-cCcch
Confidence 999999998877 899999999987654332 2 3478999999 66999999999999999975 99999
Q ss_pred HHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHH
Q 011355 384 TVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAA 462 (488)
Q Consensus 384 ~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 462 (488)
+++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++.+ ++.+.++++++++++.++|+|+.++++
T Consensus 279 ~~~Ea~~~G~Pvi~s~~~~~~-~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~ 356 (359)
T cd03808 279 VLLEAMAMGRPVIATDVPGCR-EAVIDGVNGFLVPPGDAEALADAIERLIED-PELRARMGQAARKRAEEEFDEEIVVKK 356 (359)
T ss_pred HHHHHHHcCCCEEEecCCCch-hhhhcCcceEEECCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999987 88888999999998 899999999999998 899999999999999999999999988
Q ss_pred HH
Q 011355 463 YE 464 (488)
Q Consensus 463 ~~ 464 (488)
+.
T Consensus 357 ~~ 358 (359)
T cd03808 357 LL 358 (359)
T ss_pred hh
Confidence 75
No 57
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=1.6e-34 Score=278.77 Aligned_cols=335 Identities=23% Similarity=0.295 Sum_probs=247.9
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCce--EEEecCCCCccCcchhHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISS--LYFHLSKPTAAGYLDQSIVWQQL 155 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~ 155 (488)
||++++..+ ..||.++.+..++++|.+.||+|.+++............... ........ ...........+
T Consensus 1 kIl~~~~~~----~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 73 (353)
T cd03811 1 KILFVIPSL----GGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKL---KSLRDLLAILRL 73 (353)
T ss_pred CeEEEeecc----cCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeec---ccccchhHHHHH
Confidence 688998855 369999999999999999999999999876544322211100 00110000 111112222233
Q ss_pred HHHhcCCCCCcEEEeCCc-c--hHHhhhc--cCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 011355 156 QTQNSTGKPFDVIHTESV-G--LRHTRAR--NLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVK 230 (488)
Q Consensus 156 ~~~~~~~~~~Dvv~~~~~-~--~~~~~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (488)
....+.. +||+|+++.. . +...... +.| .+.+.|+.......... ... .....
T Consensus 74 ~~~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~--------------~~~------~~~~~ 131 (353)
T cd03811 74 RRLLRKE-KPDVVISHLTTTPNVLALLAARLGTK-LIVWEHNSLSLELKRKL--------------RLL------LLIRK 131 (353)
T ss_pred HHHHHhc-CCCEEEEcCccchhHHHHHHhhcCCc-eEEEEcCcchhhhccch--------------hHH------HHHHh
Confidence 3333333 8999999975 2 1222222 356 99999986543211100 000 11225
Q ss_pred hcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHH
Q 011355 231 FFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPL 310 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ 310 (488)
.++++|.++++|+..++.+.+.++.+..++.++|||+|...+........ +++.+.++ ++++++|++.+.||++.
T Consensus 132 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~-~~i~~~g~~~~~k~~~~ 206 (353)
T cd03811 132 LYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL----ELGIPPDG-PVILAVGRLSPQKGFDT 206 (353)
T ss_pred hccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh----hcCCCCCc-eEEEEEecchhhcChHH
Confidence 67899999999999999999987766789999999999887765433211 22334444 88999999999999999
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
+++++..+.++. ++++|+++|.++..+.+++ +.++|.+.|+++ ++.++|+.||++++||.. ||+|++
T Consensus 207 ~i~~~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~d~~i~ps~~-e~~~~~ 279 (353)
T cd03811 207 LIRAFALLRKEG----PDARLVILGDGPLREELEALAKELGLADRVHFLGFQS--NPYPYLKAADLFVLSSRY-EGFPNV 279 (353)
T ss_pred HHHHHHHhhhcC----CCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccC--CHHHHHHhCCEEEeCccc-CCCCcH
Confidence 999999999887 7999999999887665543 347899999954 899999999999999975 999999
Q ss_pred HHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHH---HHHHHHHHhcCHHHHHHHHHHHHHHHhhhCC
Q 011355 385 VLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESV---KKALYGIWADGREVLEKKGLVARKRGLNLFT 455 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~l---a~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs 455 (488)
++|||++|+|||+++.++.. |++.++.+|+++++ |.+++ ++.+..+.++ ++.+.++++++++.+.++|+
T Consensus 280 ~~Ea~~~G~PvI~~~~~~~~-e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 280 LLEAMALGTPVVATDCPGPR-EILEDGENGLLVPVGDEAALAAAALALLDLLLD-PELRERLAAAARERVAREYS 352 (353)
T ss_pred HHHHHHhCCCEEEcCCCChH-HHhcCCCceEEECCCCHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987 89999999999998 88888 7788888888 88899999988888888776
No 58
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=1.9e-34 Score=278.78 Aligned_cols=340 Identities=20% Similarity=0.218 Sum_probs=226.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecC--CCCc-cCcchhHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLS--KPTA-AGYLDQSIVWQQ 154 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~--~~~~-~~~~~~~~~~~~ 154 (488)
||++++..++ ..||+|+.+.++++.|.+ .+|..+............. ..+..... .+.. .....+......
T Consensus 1 ~i~~~~~~~~---~~GG~E~~~~~l~~~l~~--~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (351)
T cd03804 1 KVAIVHDWLV---NIGGGEKVVEALARLFPD--ADIFTLVDDPDKLPRLLRL-KKIRTSFIQKLPFARRRYRKYLPLMPL 74 (351)
T ss_pred CEEEEEeccc---cCCCHHHHHHHHHHhCCC--CCEEEEeecCCccchhhcC-CceeechhhhchhhHhhHhhhCchhhH
Confidence 6899997653 469999999999998864 2333333222111111111 11111111 1100 001111111111
Q ss_pred HHHHhcCCCCCcEEEeCCcchHHhh--hccCCcEEEeeeCCcchhhhhhhhHhhhcC---CCChhHHHHHHHHHHHHHHh
Q 011355 155 LQTQNSTGKPFDVIHTESVGLRHTR--ARNLTNVVVSWHGIAYETIHSDIIQELLRT---PEEPQAYALAERASKVVEEV 229 (488)
Q Consensus 155 ~~~~~~~~~~~Dvv~~~~~~~~~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 229 (488)
+....... ++|+|++++....... ....| .+..+|......+ +........ ............+... +.
T Consensus 75 ~~~~~~~~-~~D~v~~~~~~~~~~~~~~~~~~-~~~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 148 (351)
T cd03804 75 AIEQFDLS-GYDLVISSSHAVAKGVITRPDQL-HICYCHTPMRYAW--DLYHDYLKESGLGKRLALRLLLHYLRIW--DR 148 (351)
T ss_pred HHHhcccc-CCCEEEEcCcHHhccccCCCCCc-EEEEeCCchHHHh--cCchHhhhhcccchhhHHHHHHHHHHHH--HH
Confidence 22222222 8999999875433332 23455 6777776321110 000011000 0111111122222222 22
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChH
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHP 309 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~ 309 (488)
+.++++|.++++|+.+++.+.+.++. +..+++||+|.+.+.+.. ..+ ..++++|++.+.||++
T Consensus 149 ~~~~~~d~ii~~S~~~~~~~~~~~~~---~~~vi~~~~d~~~~~~~~-------------~~~-~~il~~G~~~~~K~~~ 211 (351)
T cd03804 149 RSAARVDYFIANSRFVARRIKKYYGR---DATVIYPPVDTDRFTPAE-------------EKE-DYYLSVGRLVPYKRID 211 (351)
T ss_pred HHhcCCCEEEECCHHHHHHHHHHhCC---CcEEECCCCCHhhcCcCC-------------CCC-CEEEEEEcCccccChH
Confidence 55799999999999999999886653 468999999987765432 122 3577999999999999
Q ss_pred HHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh-hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHH
Q 011355 310 LMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD-LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEA 388 (488)
Q Consensus 310 ~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~-l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEA 388 (488)
.+++|++.+ + ++|+|+|+|+..+.+++ ..++|+|+|+++++++.++|+.||++++||. |+||++++||
T Consensus 212 ~li~a~~~~--------~-~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~--e~~g~~~~Ea 280 (351)
T cd03804 212 LAIEAFNKL--------G-KRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAE--EDFGIVPVEA 280 (351)
T ss_pred HHHHHHHHC--------C-CcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCc--CCCCchHHHH
Confidence 999999876 5 78999999988776664 4589999999999999999999999999994 9999999999
Q ss_pred HHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 389 MLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 389 ma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
|+||+|||+++.++.. |++.++.+|+++++ |+++++++|..++++ ++ .+++++++.+. +|+|+.+.+++
T Consensus 281 ma~G~Pvi~~~~~~~~-e~i~~~~~G~~~~~~~~~~la~~i~~l~~~-~~---~~~~~~~~~~~-~~~~~~~~~~~ 350 (351)
T cd03804 281 MASGTPVIAYGKGGAL-ETVIDGVTGILFEEQTVESLAAAVERFEKN-ED---FDPQAIRAHAE-RFSESRFREKI 350 (351)
T ss_pred HHcCCCEEEeCCCCCc-ceeeCCCCEEEeCCCCHHHHHHHHHHHHhC-cc---cCHHHHHHHHH-hcCHHHHHHHh
Confidence 9999999999999988 89999999999998 999999999999998 53 23445555554 48999988765
No 59
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=2e-33 Score=275.19 Aligned_cols=215 Identities=21% Similarity=0.311 Sum_probs=189.5
Q ss_pred hcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHH
Q 011355 231 FFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPL 310 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ 310 (488)
.++++|.++++|+..++.+.+.++...+++.+++||++...+.... ..++++.++++|++.+.||++.
T Consensus 180 ~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~------------~~~~~~~il~~Grl~~~Kg~~~ 247 (407)
T cd04946 180 LLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISKP------------SKDDTLRIVSCSYLVPVKRVDL 247 (407)
T ss_pred HHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCCC------------CCCCCEEEEEeeccccccCHHH
Confidence 4678999999999999999998888888999999999886554321 1123388999999999999999
Q ss_pred HHHHHHHhHhhccCCCC--CeEEEEEeCCCchhHHhhh------CCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCC
Q 011355 311 MFEALKQLLAENDTFRR--STVFLVAGDGPWGARYRDL------GTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQG 380 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~--~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg 380 (488)
+++|+..+.+++ | +++++++|+|+..+.++++ .++|+|+|+++.+++..+|+. +|++++||. .||
T Consensus 248 li~a~~~l~~~~----p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~-~Eg 322 (407)
T cd04946 248 IIKALAALAKAR----PSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSE-SEG 322 (407)
T ss_pred HHHHHHHHHHhC----CCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCc-ccc
Confidence 999999999876 5 5677889999877666542 367999999999999999986 788999997 599
Q ss_pred CChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC--CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHH
Q 011355 381 LDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP--QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATK 458 (488)
Q Consensus 381 ~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~--d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~ 458 (488)
+|++++|||++|+|||+|++||.+ |++.++.+|+++++ |+++++++|.+++++ ++.+++|+++|++.+.++|+++.
T Consensus 323 ~p~~llEAma~G~PVIas~vgg~~-e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~-~~~~~~m~~~ar~~~~~~f~~~~ 400 (407)
T cd04946 323 LPVSIMEAMSFGIPVIATNVGGTP-EIVDNGGNGLLLSKDPTPNELVSSLSKFIDN-EEEYQTMREKAREKWEENFNASK 400 (407)
T ss_pred ccHHHHHHHHcCCCEEeCCCCCcH-HHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999999998 89999989999986 799999999999998 99999999999999999999999
Q ss_pred HHHHHH
Q 011355 459 MAAAYE 464 (488)
Q Consensus 459 ~~~~~~ 464 (488)
..+++.
T Consensus 401 ~~~~~~ 406 (407)
T cd04946 401 NYREFA 406 (407)
T ss_pred hHHHhc
Confidence 988874
No 60
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=6.7e-33 Score=261.18 Aligned_cols=217 Identities=16% Similarity=0.178 Sum_probs=176.7
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCC-CCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIP-EERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPL 310 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~-~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ 310 (488)
.+++|.++++|+.+++.+.+ .|++ ++++.+||||+|.+.|.+.... .+.+++++++|++.+.||++.
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~-~g~~~~~~i~vIpNGVd~~~f~~~~~~-----------~~~~~vl~~~g~~~~~Kg~d~ 159 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYT-SGLKIPQPIYVIPHNLNPRMFEYKPKE-----------KPHPCVLAILPHSWDRKGGDI 159 (331)
T ss_pred hccCCEEEECCHHHHHHHHH-cCCCCCCCEEEECCCCCHHHcCCCccc-----------cCCCEEEEEeccccccCCHHH
Confidence 47899999999999999987 5655 5689999999998877543221 123377778889999999999
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHH
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAML 390 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma 390 (488)
+++|++.+.++. ++++++++|+++....+..+. .+.|.++.+++..+|+.||++++||. .||||++++||||
T Consensus 160 Li~A~~~l~~~~----~~~~llivG~~~~~~~l~~~~---~~~~~v~~~~l~~~y~~aDv~v~pS~-~E~fgl~~lEAMA 231 (331)
T PHA01630 160 VVKIFHELQNEG----YDFYFLIKSSNMLDPRLFGLN---GVKTPLPDDDIYSLFAGCDILFYPVR-GGAFEIPVIEALA 231 (331)
T ss_pred HHHHHHHHHhhC----CCEEEEEEeCcccchhhcccc---ceeccCCHHHHHHHHHhCCEEEECCc-cccCChHHHHHHH
Confidence 999999999887 899999999776544333221 13566889999999999999999997 5999999999999
Q ss_pred cCCcEEEeCCCCcccceeecCCceeEe--------------------CCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Q 011355 391 SGKPLMATRLASIVGSVIVGTDMGYLF--------------------SPQVESVKKALYGIWADG-REVLEKKGLVARKR 449 (488)
Q Consensus 391 ~G~PVI~~~~~~~~~e~v~~~~~g~l~--------------------~~d~~~la~~i~~ll~~~-~~~~~~~~~~a~~~ 449 (488)
||+|||+|+.||.+ |++.++.+|+++ ++|.+++++++.+++.++ ++.++++..++...
T Consensus 232 ~G~PVIas~~gg~~-E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~ 310 (331)
T PHA01630 232 LGLDVVVTEKGAWS-EWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAIL 310 (331)
T ss_pred cCCCEEEeCCCCch-hhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999999999988 888888776665 447889999999999872 25555555555665
Q ss_pred HhhhCCHHHHHHHHHHHHHH
Q 011355 450 GLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 450 ~~~~fs~~~~~~~~~~~~~~ 469 (488)
+.++|||++++++++++|++
T Consensus 311 ~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 311 YRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 66889999999999999965
No 61
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.6e-32 Score=265.85 Aligned_cols=311 Identities=16% Similarity=0.171 Sum_probs=210.0
Q ss_pred CCcHHHHHHHHHHHHHHCCC-eEEEEecCCCCCCCCCCCCceEEEecCC-C-CccCcchhHH----------HHHHHHHH
Q 011355 92 AGGLERHALTLHLALAKRGH-ELHIFTASCLNCSFPTYPISSLYFHLSK-P-TAAGYLDQSI----------VWQQLQTQ 158 (488)
Q Consensus 92 ~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~~~~~~~~----------~~~~~~~~ 158 (488)
..|.+..+..++..|.++|+ +|++++..............++.++... + .......... .+..+...
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLLWF 93 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 36667777788899988875 8999998664433233334344444432 1 1101111111 11111111
Q ss_pred h-cCCCCCcEEEeCCcch-----HHh-h--hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHh
Q 011355 159 N-STGKPFDVIHTESVGL-----RHT-R--ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEV 229 (488)
Q Consensus 159 ~-~~~~~~Dvv~~~~~~~-----~~~-~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
. .+..+||+||+|+... ... . ..+.| ++.++|+.+...... ..........+...+.+
T Consensus 94 ~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~-------~~~~~~~~~~~~~~~e~----- 160 (371)
T PLN02275 94 LCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAK-FVIDWHNFGYTLLAL-------SLGRSHPLVRLYRWYER----- 160 (371)
T ss_pred HHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCC-EEEEcCCccHHHHhc-------ccCCCCHHHHHHHHHHH-----
Confidence 1 1122899999986331 111 1 23456 889999864211100 00111111233333333
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChH
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHP 309 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~ 309 (488)
..++++|.++++|+.+++.+.+.+|++ +.+|+|+. .+.|.+.... . .+..+++.+++++||+.+.||++
T Consensus 161 ~~~~~ad~ii~~S~~~~~~l~~~~g~~---i~vi~n~~-~~~f~~~~~~-----~--~~~~~~~~~i~~~grl~~~k~~~ 229 (371)
T PLN02275 161 HYGKMADGHLCVTKAMQHELDQNWGIR---ATVLYDQP-PEFFRPASLE-----I--RLRPNRPALVVSSTSWTPDEDFG 229 (371)
T ss_pred HHHhhCCEEEECCHHHHHHHHHhcCCC---eEEECCCC-HHHcCcCCch-----h--cccCCCcEEEEEeCceeccCCHH
Confidence 457889999999999999998866764 88999985 3445443211 1 11223336778999999999999
Q ss_pred HHHHHHHHhHh-----------------hccCCCCCeEEEEEeCCCchhHHhhh----C-CcEEEeC-ccCHHHHHHHHH
Q 011355 310 LMFEALKQLLA-----------------ENDTFRRSTVFLVAGDGPWGARYRDL----G-TNVIVLG-PLDQTRLAMFYN 366 (488)
Q Consensus 310 ~ll~a~~~l~~-----------------~~~~~~~~~~l~ivG~g~~~~~~~~l----~-~~V~~~g-~v~~~~l~~~~~ 366 (488)
.+++|+..+.. +. |+++|+|+|+|+..+++++. + ++|.|.+ +++.+++..+|+
T Consensus 230 ~li~a~~~l~~~~~~~~~~~~~~~~~~~~~----~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~ 305 (371)
T PLN02275 230 ILLEAAVMYDRRVAARLNESDSASGKQSLY----PRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLG 305 (371)
T ss_pred HHHHHHHHHHhhhhhccccccccccccccC----CCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHH
Confidence 99999988742 34 78999999999988776642 2 4588766 699999999999
Q ss_pred hcCEEEeCC--CCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHH
Q 011355 367 AIDIFVNPT--LRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIW 432 (488)
Q Consensus 367 ~adv~v~ps--~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll 432 (488)
.||++|.|+ ...||+|++++||||||+|||+++.|+.+ |++.++.+|++++ |+++++++|.+++
T Consensus 306 ~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~-eiv~~g~~G~lv~-~~~~la~~i~~l~ 371 (371)
T PLN02275 306 SADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG-ELVKDGKNGLLFS-SSSELADQLLELL 371 (371)
T ss_pred hCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH-HHccCCCCeEEEC-CHHHHHHHHHHhC
Confidence 999999763 33589999999999999999999999988 9999999999998 8999999998864
No 62
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=1.9e-32 Score=271.22 Aligned_cols=216 Identities=16% Similarity=0.237 Sum_probs=182.1
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhc---CCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecccc
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYM---IPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDK 306 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g---~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~K 306 (488)
...+.+|.+|++|+..++.+.+.++ .+..++.++|||++...+.+.. ..++..++++||+.+.|
T Consensus 266 ~~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~-------------~r~~~~il~vGrl~~~K 332 (500)
T TIGR02918 266 SNADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ-------------ERKPFSIITASRLAKEK 332 (500)
T ss_pred hchhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc-------------ccCCeEEEEEecccccc
Confidence 3457899999999998888877553 3467899999998654432211 12236889999999999
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQG 380 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg 380 (488)
|++.+++|+..+.++. |+++|+|+|+|+..+.+++ +.++|.|+|+. ++.++|+.||++|+||. .||
T Consensus 333 g~~~li~A~~~l~~~~----p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~-~Eg 404 (500)
T TIGR02918 333 HIDWLVKAVVKAKKSV----PELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSAST-SEG 404 (500)
T ss_pred CHHHHHHHHHHHHhhC----CCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCc-ccc
Confidence 9999999999999888 9999999999988766654 34789999974 57889999999999997 599
Q ss_pred CChHHHHHHHcCCcEEEeCCC-CcccceeecCCceeEeCC-----C----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011355 381 LDHTVLEAMLSGKPLMATRLA-SIVGSVIVGTDMGYLFSP-----Q----VESVKKALYGIWADGREVLEKKGLVARKRG 450 (488)
Q Consensus 381 ~~~~~lEAma~G~PVI~~~~~-~~~~e~v~~~~~g~l~~~-----d----~~~la~~i~~ll~~~~~~~~~~~~~a~~~~ 450 (488)
||++++||||||+|||+++++ |.+ |++.++.+|+++++ | +++++++|.++++ ++.+.+|+++|++.+
T Consensus 405 fgl~~lEAma~G~PVI~~dv~~G~~-eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~--~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 405 FGLTLMEAVGSGLGMIGFDVNYGNP-TFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN--SNDIDAFHEYSYQIA 481 (500)
T ss_pred ccHHHHHHHHhCCCEEEecCCCCCH-HHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHH
Confidence 999999999999999999987 676 89999999999983 2 8899999999994 457899999999987
Q ss_pred hhhCCHHHHHHHHHHHHHHh
Q 011355 451 LNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 451 ~~~fs~~~~~~~~~~~~~~~ 470 (488)
+ .|||+.+++++.++++++
T Consensus 482 ~-~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 482 E-GFLTANIIEKWKKLVREV 500 (500)
T ss_pred H-hcCHHHHHHHHHHHHhhC
Confidence 4 599999999999998764
No 63
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=100.00 E-value=2.4e-32 Score=270.19 Aligned_cols=387 Identities=17% Similarity=0.144 Sum_probs=254.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHhhcCCCCCcccCCcccccccccccccccccccccccCCCCCCCCceEEEEEecCCCCCCC
Q 011355 12 RSFCCVFFVLSAFSFISFLYWCHCSGPCYSQNQIMTQKQDKFIDLLWFPSAWNHLSFPSNPPLKLLKIALFVKKWPHRSH 91 (488)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~~~p~~~~ 91 (488)
..+|.+++.+++|++..++++|+.+...+ +.++. +++++.......+-+.++++. .
T Consensus 3 ~~~y~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~---------------~r~~~~~~~~~~~~~~iW~Ha------~ 58 (425)
T PRK05749 3 RLLYTALLYLALPLILLRLLLRSRKAPKY---RKRWG---------------ERFGFRKPNPPPKGPLIWFHA------V 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccc---hhhhc---------------cccCCCCCCCCCCCCeEEEEe------C
Confidence 45899999999999999988886544444 44455 555542111112234578886 6
Q ss_pred CCcHHHHHHHHHHHHHHCCCe--EEEEecCCCCCCCCC-CCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEE
Q 011355 92 AGGLERHALTLHLALAKRGHE--LHIFTASCLNCSFPT-YPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVI 168 (488)
Q Consensus 92 ~gG~~~~~~~l~~~L~~~G~~--V~v~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 168 (488)
+.|....+..|++.|.+++++ |.+.+.+.++..... ...+.+.+... | .+.......+.+.. +||++
T Consensus 59 s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~-P-----~d~~~~~~~~l~~~----~Pd~v 128 (425)
T PRK05749 59 SVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYL-P-----YDLPGAVRRFLRFW----RPKLV 128 (425)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEe-c-----CCcHHHHHHHHHhh----CCCEE
Confidence 678889999999999988655 444443332222111 11111222111 1 23334455555444 89999
Q ss_pred EeCCcchH-----HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcCh
Q 011355 169 HTESVGLR-----HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSD 243 (488)
Q Consensus 169 ~~~~~~~~-----~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~ 243 (488)
+++...++ .....++| ++...|....... ..+....+... ..++.+|.++++|+
T Consensus 129 ~~~~~~~~~~~l~~~~~~~ip-~vl~~~~~~~~s~------------------~~~~~~~~~~r--~~~~~~d~ii~~S~ 187 (425)
T PRK05749 129 IIMETELWPNLIAELKRRGIP-LVLANARLSERSF------------------KRYQKFKRFYR--LLFKNIDLVLAQSE 187 (425)
T ss_pred EEEecchhHHHHHHHHHCCCC-EEEEeccCChhhH------------------HHHHHHHHHHH--HHHHhCCEEEECCH
Confidence 98753322 22334567 6655444311110 00011111111 35678999999999
Q ss_pred hhHHHHHHHhcCCCCcEEEecCC-ccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhc
Q 011355 244 HCGDVLKRIYMIPEERVHVILNG-VDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAEN 322 (488)
Q Consensus 244 ~~~~~~~~~~g~~~~~i~vi~ng-vd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~ 322 (488)
..++.+.+ +|++.+ +.+++|+ +|.............++++++ + ++ .+++++|+. .|+.+.+++|++++.++.
T Consensus 188 ~~~~~l~~-~g~~~~-i~vi~n~~~d~~~~~~~~~~~~~~r~~~~-~-~~-~vil~~~~~--~~~~~~ll~A~~~l~~~~ 260 (425)
T PRK05749 188 EDAERFLA-LGAKNE-VTVTGNLKFDIEVPPELAARAATLRRQLA-P-NR-PVWIAASTH--EGEEELVLDAHRALLKQF 260 (425)
T ss_pred HHHHHHHH-cCCCCC-cEecccccccCCCChhhHHHHHHHHHHhc-C-CC-cEEEEeCCC--chHHHHHHHHHHHHHHhC
Confidence 99999998 788777 8899984 443322222223356777776 3 44 566777764 677899999999998888
Q ss_pred cCCCCCeEEEEEeCCCch-hHHhhh----C---------------CcEEEeCccCHHHHHHHHHhcCEE-EeCCCCCCCC
Q 011355 323 DTFRRSTVFLVAGDGPWG-ARYRDL----G---------------TNVIVLGPLDQTRLAMFYNAIDIF-VNPTLRAQGL 381 (488)
Q Consensus 323 ~~~~~~~~l~ivG~g~~~-~~~~~l----~---------------~~V~~~g~v~~~~l~~~~~~adv~-v~ps~~~eg~ 381 (488)
|+++|+|+|+|+.+ +.+++. + .+|.+.+. .+++..+|+.||++ +.+|. .|++
T Consensus 261 ----~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~--~~el~~~y~~aDi~~v~~S~-~e~~ 333 (425)
T PRK05749 261 ----PNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT--MGELGLLYAIADIAFVGGSL-VKRG 333 (425)
T ss_pred ----CCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec--HHHHHHHHHhCCEEEECCCc-CCCC
Confidence 89999999999875 444432 1 13455554 56999999999995 45676 4889
Q ss_pred ChHHHHHHHcCCcEEEeCC-CCcccceeecC-CceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHH
Q 011355 382 DHTVLEAMLSGKPLMATRL-ASIVGSVIVGT-DMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATK 458 (488)
Q Consensus 382 ~~~~lEAma~G~PVI~~~~-~~~~~e~v~~~-~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~ 458 (488)
|++++|||+||+|||+++. ++.. ++.... ++|.++++ |+++++++|.++++| ++.+++|++++++++.++ ..
T Consensus 334 g~~~lEAma~G~PVI~g~~~~~~~-e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~-~~~~~~m~~~a~~~~~~~---~~ 408 (425)
T PRK05749 334 GHNPLEPAAFGVPVISGPHTFNFK-EIFERLLQAGAAIQVEDAEDLAKAVTYLLTD-PDARQAYGEAGVAFLKQN---QG 408 (425)
T ss_pred CCCHHHHHHhCCCEEECCCccCHH-HHHHHHHHCCCeEEECCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhC---cc
Confidence 9999999999999999865 3333 444332 45777777 999999999999998 999999999999999775 36
Q ss_pred HHHHHHHHHHHhhc
Q 011355 459 MAAAYERLFLCISN 472 (488)
Q Consensus 459 ~~~~~~~~~~~~~~ 472 (488)
..+++.+++.+.+.
T Consensus 409 ~~~~~~~~l~~~l~ 422 (425)
T PRK05749 409 ALQRTLQLLEPYLP 422 (425)
T ss_pred HHHHHHHHHHHhcc
Confidence 66777777776554
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=7e-32 Score=262.94 Aligned_cols=347 Identities=14% Similarity=0.062 Sum_probs=226.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCCCCC--------------------------CC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCLNCSFPT--------------------------YP 129 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~--------------------------~~ 129 (488)
-+|+|++..-.| -..|...--+--+-+|++. |++|+++.+--....... .-
T Consensus 323 r~~~ivTtAslP--WmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~ 400 (794)
T PLN02501 323 RHVAIVTTASLP--WMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGF 400 (794)
T ss_pred CeEEEEEcccCc--ccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 479999876555 3455544444456677777 799999987543221111 00
Q ss_pred CceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEEEeCCcchHHhh-------hccCCcEEEeeeCCcchhhhhhh
Q 011355 130 ISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTESVGLRHTR-------ARNLTNVVVSWHGIAYETIHSDI 202 (488)
Q Consensus 130 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~-------~~~~p~~v~~~h~~~~~~~~~~~ 202 (488)
.....+.++.........-......+....... +|||||++++....+. .+.-| ++..+|.....+..
T Consensus 401 ~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f-~PDVVHLatP~~LGw~~~Glr~ArKl~P-VVasyHTny~eYl~--- 475 (794)
T PLN02501 401 KADFKISFYPGKFSKERRSIIPAGDTSQFIPSK-DADIAILEEPEHLNWYHHGKRWTDKFNH-VVGVVHTNYLEYIK--- 475 (794)
T ss_pred CCCceEEeecchhccCCccccchHHHHHHhhcc-CCCEEEECCchhhccHHHHHHHHHHcCC-eEEEEeCCcHHHHh---
Confidence 011111111100000001111122233333333 8999999986543333 22236 88899975432211
Q ss_pred hHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhh
Q 011355 203 IQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDF 282 (488)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~ 282 (488)
.+........+.+.+.++... ++ ||.++++|+.+.+ + +...+..+ ||||.+.|.+.... ..
T Consensus 476 -----~y~~g~L~~~llk~l~~~v~r--~h--cD~VIaPS~atq~-L------~~~vI~nV-nGVDte~F~P~~r~--~~ 536 (794)
T PLN02501 476 -----REKNGALQAFFVKHINNWVTR--AY--CHKVLRLSAATQD-L------PKSVICNV-HGVNPKFLKIGEKV--AE 536 (794)
T ss_pred -----HhcchhHHHHHHHHHHHHHHH--hh--CCEEEcCCHHHHH-h------cccceeec-ccccccccCCcchh--HH
Confidence 111112222233333333321 22 8999999977663 2 12222222 79999998876442 22
Q ss_pred hhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh----hCCcEEEeCccCH
Q 011355 283 KKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD----LGTNVIVLGPLDQ 358 (488)
Q Consensus 283 r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~----l~~~V~~~g~v~~ 358 (488)
+++++++... ..++|+||+.++||++.+++|++.+.++. ++++|+|+|+|+..+.+++ ++-+|.|+|..+
T Consensus 537 ~r~lgi~~~~-kgiLfVGRLa~EKGld~LLeAla~L~~~~----pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~d- 610 (794)
T PLN02501 537 ERELGQQAFS-KGAYFLGKMVWAKGYRELIDLLAKHKNEL----DGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRD- 610 (794)
T ss_pred HHhcCCcccc-CceEEEEcccccCCHHHHHHHHHHHHhhC----CCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCC-
Confidence 3566665433 34679999999999999999999998877 8999999999999877765 334589999854
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHH
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREV 438 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~ 438 (488)
+..++|+.+|+||+||. .||||++++||||||+|||+++.++. +.+.++.+|++.. |.++++++|.+++.+ ++.
T Consensus 611 -d~~~lyasaDVFVlPS~-sEgFGlVlLEAMA~GlPVVATd~pG~--e~V~~g~nGll~~-D~EafAeAI~~LLsd-~~~ 684 (794)
T PLN02501 611 -HADDSLHGYKVFINPSI-SDVLCTATAEALAMGKFVVCADHPSN--EFFRSFPNCLTYK-TSEDFVAKVKEALAN-EPQ 684 (794)
T ss_pred -CHHHHHHhCCEEEECCC-cccchHHHHHHHHcCCCEEEecCCCC--ceEeecCCeEecC-CHHHHHHHHHHHHhC-chh
Confidence 67799999999999997 59999999999999999999999984 4577788888765 999999999999998 443
Q ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 011355 439 LEKKGLVARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 439 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
...+++ ...|||+.+++++.+.-
T Consensus 685 rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 685 PLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred hhHHHH------HhhCCHHHHHHHHHHhh
Confidence 333321 23689999999998764
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=100.00 E-value=4.3e-32 Score=251.96 Aligned_cols=311 Identities=14% Similarity=0.241 Sum_probs=219.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
||-++++..| +.+.....++++.|++.|.-|++++....-+.. ....+.+++..| ....+...
T Consensus 1 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~----- 63 (335)
T PHA01633 1 MKTAILTMNY------SSISNVSEDIAEVLRENGEIVTITKNPFYIPKA---EKLIVFIPFHPP---SLNPYLYA----- 63 (335)
T ss_pred CceEEEEech------hhhhhHHHHHHHHHHhCCcEEEEecCCcccCcc---ceEEEEeecCCc---ccchHHhh-----
Confidence 6778888754 455667788999999999888888765422211 111122222222 11111111
Q ss_pred HHhcCCCCCcEEEeCCcchHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCcc
Q 011355 157 TQNSTGKPFDVIHTESVGLRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYA 236 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 236 (488)
..++....+ .+.++|+.... .++ . +.+.+.+
T Consensus 64 -------------------~~~~~~~~~-~~tt~~g~~~~--------------------~~y---~------~~m~~~~ 94 (335)
T PHA01633 64 -------------------YYQFKGKKY-FYTTCDGIPNI--------------------EIV---N------KYLLQDV 94 (335)
T ss_pred -------------------hhhhcCCCc-eEEeeCCcCch--------------------HHH---H------HHHhcCC
Confidence 122222335 88999986321 111 1 2233456
Q ss_pred EEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHH
Q 011355 237 HHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALK 316 (488)
Q Consensus 237 ~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~ 316 (488)
.+|++|+.+++.+.+ .|++.. + +|++|+|.+.|.+.......+|++++....+.++++++||+.++||++.+++|++
T Consensus 95 ~vIavS~~t~~~L~~-~G~~~~-i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~ 171 (335)
T PHA01633 95 KFIPNSKFSAENLQE-VGLQVD-L-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFN 171 (335)
T ss_pred EEEeCCHHHHHHHHH-hCCCCc-e-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHH
Confidence 889999999999998 687654 3 5789999998877554445677777754233478999999999999999999999
Q ss_pred HhHhhccCCCCCeEEEEEeCCCchhHHh--hhCCcEEEe---CccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHc
Q 011355 317 QLLAENDTFRRSTVFLVAGDGPWGARYR--DLGTNVIVL---GPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLS 391 (488)
Q Consensus 317 ~l~~~~~~~~~~~~l~ivG~g~~~~~~~--~l~~~V~~~---g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~ 391 (488)
.+.++.++...+++++++|.+ .++ .+.++|+|. |+++.+++.++|++||++|+||. .||||++++|||+|
T Consensus 172 ~L~~~~p~~~~~i~l~ivG~~----~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~-~EgfGlvlLEAMA~ 246 (335)
T PHA01633 172 ELNTKYPDIAKKIHFFVISHK----QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG-TEGFGMPVLESMAM 246 (335)
T ss_pred HHHHhCCCccccEEEEEEcHH----HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc-cccCCHHHHHHHHc
Confidence 998877111114688888843 223 255789998 56678999999999999999997 59999999999999
Q ss_pred CCcEEEeCCCCcccceee------------------cCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 011355 392 GKPLMATRLASIVGSVIV------------------GTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLN 452 (488)
Q Consensus 392 G~PVI~~~~~~~~~e~v~------------------~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~ 452 (488)
|+|||+++.++++ |++. +...|+.+++ |+++++++|..++.. . ....++.++++.+++
T Consensus 247 G~PVVas~~~~l~-Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~-~-~~~~~~~~~~~~a~~ 323 (335)
T PHA01633 247 GTPVIHQLMPPLD-EFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFEL-Q-DREERSMKLKELAKK 323 (335)
T ss_pred CCCEEEccCCCce-eecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhc-c-ChhhhhHHHHHHHHh
Confidence 9999999999987 6432 1235778888 999999999999665 2 233446788888755
Q ss_pred hCCHHHHHHHHHH
Q 011355 453 LFTATKMAAAYER 465 (488)
Q Consensus 453 ~fs~~~~~~~~~~ 465 (488)
|+|++++++|++
T Consensus 324 -f~~~~~~~~~~~ 335 (335)
T PHA01633 324 -YDIRNLYTRFLE 335 (335)
T ss_pred -cCHHHHHHHhhC
Confidence 999999998863
No 66
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.97 E-value=4.9e-30 Score=250.15 Aligned_cols=211 Identities=15% Similarity=0.234 Sum_probs=182.1
Q ss_pred hcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHH
Q 011355 231 FFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPL 310 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ 310 (488)
.++++|.+++.|+..++.+.+.++.. .++.+||||++...+.+... .+..+ ..++++||+.+.||++.
T Consensus 154 ~~~~~d~ii~~s~~~~~~l~~~~~~~-~~v~~ip~g~~~~~~~~~~~----------~~~~~-~~i~~vgrl~~~K~~~~ 221 (372)
T cd04949 154 NLDKVDGVIVATEQQKQDLQKQFGNY-NPIYTIPVGSIDPLKLPAQF----------KQRKP-HKIITVARLAPEKQLDQ 221 (372)
T ss_pred ChhhCCEEEEccHHHHHHHHHHhCCC-CceEEEcccccChhhcccch----------hhcCC-CeEEEEEccCcccCHHH
Confidence 35789999999999999999877643 45999999999876654310 01222 67889999999999999
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
+++++.++.++. |+++|+|+|.|+....+++ +.++|.+.|+ .+++..+|+.||++|+||. .||||++
T Consensus 222 li~a~~~l~~~~----~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~v~~S~-~Eg~~~~ 294 (372)
T cd04949 222 LIKAFAKVVKQV----PDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGY--TRDLDEVYQKAQLSLLTSQ-SEGFGLS 294 (372)
T ss_pred HHHHHHHHHHhC----CCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCC--CCCHHHHHhhhhEEEeccc-ccccChH
Confidence 999999999988 9999999999887655443 3578999997 5589999999999999997 5999999
Q ss_pred HHHHHHcCCcEEEeCCC-CcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHH
Q 011355 385 VLEAMLSGKPLMATRLA-SIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAA 462 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~~-~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 462 (488)
++|||++|+|||+++.+ |.. +++.++.+|+++++ |+++++++|..++++ ++.+.+|++++++.+ ++|||++++++
T Consensus 295 ~lEAma~G~PvI~~~~~~g~~-~~v~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~-~~~s~~~~~~~ 371 (372)
T cd04949 295 LMEALSHGLPVISYDVNYGPS-EIIEDGENGYLVPKGDIEALAEAIIELLND-PKLLQKFSEAAYENA-ERYSEENVWEK 371 (372)
T ss_pred HHHHHhCCCCEEEecCCCCcH-HHcccCCCceEeCCCcHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH-HHhhHHHHHhc
Confidence 99999999999999987 665 89999999999999 999999999999999 899999999999995 66999999876
Q ss_pred H
Q 011355 463 Y 463 (488)
Q Consensus 463 ~ 463 (488)
|
T Consensus 372 w 372 (372)
T cd04949 372 W 372 (372)
T ss_pred C
Confidence 4
No 67
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=6.9e-28 Score=233.25 Aligned_cols=328 Identities=20% Similarity=0.117 Sum_probs=223.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC--CCCCceEEEecCCCCccC-------cch
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFP--TYPISSLYFHLSKPTAAG-------YLD 147 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~-------~~~ 147 (488)
|||++++. ..||.++.+.+++++|.++||+|++++......... ..+.+...+......... ...
T Consensus 2 ~~i~i~~~------g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (357)
T PRK00726 2 KKILLAGG------GTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFK 75 (357)
T ss_pred cEEEEEcC------cchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHH
Confidence 89999985 568999999999999999999999999865321111 123333333321110011 112
Q ss_pred hHHHHHHHHHHhcCCCCCcEEEeCCc--chHH---hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 148 QSIVWQQLQTQNSTGKPFDVIHTESV--GLRH---TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~Dvv~~~~~--~~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
....+..+.+..++. +||+||+|+. .+.. ....+.| ++...|+.. + . ..
T Consensus 76 ~~~~~~~~~~~ik~~-~pDvv~~~~~~~~~~~~~~~~~~~~p-~v~~~~~~~---------------~-----~----~~ 129 (357)
T PRK00726 76 LLKGVLQARKILKRF-KPDVVVGFGGYVSGPGGLAARLLGIP-LVIHEQNAV---------------P-----G----LA 129 (357)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEECCCcchhHHHHHHHHcCCC-EEEEcCCCC---------------c-----c----HH
Confidence 233334444444444 8999999973 2222 2223456 665544321 0 0 01
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
.+ ..++.+|.+++.++... .+ .+..++++++||+|.+.+.... .+++++++++. .+++++|+.
T Consensus 130 ~r-----~~~~~~d~ii~~~~~~~---~~---~~~~~i~vi~n~v~~~~~~~~~-----~~~~~~~~~~~-~~i~~~gg~ 192 (357)
T PRK00726 130 NK-----LLARFAKKVATAFPGAF---PE---FFKPKAVVTGNPVREEILALAA-----PPARLAGREGK-PTLLVVGGS 192 (357)
T ss_pred HH-----HHHHHhchheECchhhh---hc---cCCCCEEEECCCCChHhhcccc-----hhhhccCCCCC-eEEEEECCc
Confidence 11 22346788888887432 22 5678999999999987654321 23455666555 677788888
Q ss_pred ccccChHHHH-HHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh--hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCC
Q 011355 303 VKDKGHPLMF-EALKQLLAENDTFRRSTVFLVAGDGPWGARYRD--LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQ 379 (488)
Q Consensus 303 ~~~Kg~~~ll-~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~--l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~e 379 (488)
...|++..++ +|+.++.+ . + ..++++|+|+.++..+. ++-+|.+.|++ +++.++|+.||++|.++
T Consensus 193 ~~~~~~~~~l~~a~~~~~~-~----~-~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~~~---- 260 (357)
T PRK00726 193 QGARVLNEAVPEALALLPE-A----L-QVIHQTGKGDLEEVRAAYAAGINAEVVPFI--DDMAAAYAAADLVICRA---- 260 (357)
T ss_pred HhHHHHHHHHHHHHHHhhh-C----c-EEEEEcCCCcHHHHHHHhhcCCcEEEeehH--hhHHHHHHhCCEEEECC----
Confidence 8888776555 88888753 2 3 56788999876544333 23349999996 69999999999999855
Q ss_pred CCChHHHHHHHcCCcEEEeCCCCcc-------cceeecCCceeEeCC-C--HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011355 380 GLDHTVLEAMLSGKPLMATRLASIV-------GSVIVGTDMGYLFSP-Q--VESVKKALYGIWADGREVLEKKGLVARKR 449 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~~~~~-------~e~v~~~~~g~l~~~-d--~~~la~~i~~ll~~~~~~~~~~~~~a~~~ 449 (488)
| +.+++|||++|+|||++..++.. .+.+.+.++|+++++ | +++++++|.+++++ ++.+++|+++++++
T Consensus 261 g-~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~ 338 (357)
T PRK00726 261 G-ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD-PERLEAMAEAARAL 338 (357)
T ss_pred C-HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC-HHHHHHHHHHHHhc
Confidence 2 58999999999999998765322 145777889999987 6 99999999999999 99999999999999
Q ss_pred HhhhCCHHHHHHHHHHHHH
Q 011355 450 GLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 450 ~~~~fs~~~~~~~~~~~~~ 468 (488)
+. .++.+.+++.+.++..
T Consensus 339 ~~-~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 339 GK-PDAAERLADLIEELAR 356 (357)
T ss_pred CC-cCHHHHHHHHHHHHhh
Confidence 74 4899999988887653
No 68
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.6e-26 Score=220.59 Aligned_cols=385 Identities=21% Similarity=0.239 Sum_probs=261.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-------------------------CC--
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-------------------------YP-- 129 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------------------------~~-- 129 (488)
|||++++...-|-...||....+..+.++|++.|++|.|+.+......... ..
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 899999987766678999999999999999999999999998765221111 00
Q ss_pred C-ceEEEecCCCCcc--------CcchhHHHHHHHH----HHhcCC---CCCcEEEeCCcc---hHHhhhc------cCC
Q 011355 130 I-SSLYFHLSKPTAA--------GYLDQSIVWQQLQ----TQNSTG---KPFDVIHTESVG---LRHTRAR------NLT 184 (488)
Q Consensus 130 ~-~~i~~~~~~~~~~--------~~~~~~~~~~~~~----~~~~~~---~~~Dvv~~~~~~---~~~~~~~------~~p 184 (488)
. ....+.. .+... +..+....+..+. ...... ..|||||+|+.. ++.+++. .+|
T Consensus 81 ~~v~~~lid-~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~ 159 (487)
T COG0297 81 GGVDLYLID-NPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIP 159 (487)
T ss_pred CCCcEEEec-ChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCC
Confidence 0 0111110 11111 1111111111111 111111 269999999842 3444443 346
Q ss_pred cEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHH-HHhc--------C
Q 011355 185 NVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLK-RIYM--------I 255 (488)
Q Consensus 185 ~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~-~~~g--------~ 255 (488)
.+.++|...+.........+...-|.....................+..+|.+.++|...++.+. ..+| .
T Consensus 160 -tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~ 238 (487)
T COG0297 160 -TVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSW 238 (487)
T ss_pred -eEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhh
Confidence 99999998876555522222223332111100000001111111345789999999998888776 1121 2
Q ss_pred CCCcEEEecCCccCCCcCCCcc-----------------cchhhhhhhCCCCC-CcEEEEEEeeeccccChHHHHHHHHH
Q 011355 256 PEERVHVILNGVDEEVFKPDVA-----------------MGKDFKKKFGIPEN-RSLVLGMAGRLVKDKGHPLMFEALKQ 317 (488)
Q Consensus 256 ~~~~i~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~~-~~~~i~~~Grl~~~Kg~~~ll~a~~~ 317 (488)
...+++-|-||+|.+...+... .+..+.+++|++.+ +.+.++++||+..+||++.+++++..
T Consensus 239 ~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~ 318 (487)
T COG0297 239 RSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDE 318 (487)
T ss_pred ccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHH
Confidence 3467889999999886654322 23567888999854 33899999999999999999999999
Q ss_pred hHhhccCCCCCeEEEEEeCCC--chhHHhh----hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHc
Q 011355 318 LLAENDTFRRSTVFLVAGDGP--WGARYRD----LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLS 391 (488)
Q Consensus 318 l~~~~~~~~~~~~l~ivG~g~--~~~~~~~----l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~ 391 (488)
+.++ ..++++.|.|+ +++.+.. ...++.+.-..+..-...+|+.+|++++||. .|++|++-++||..
T Consensus 319 ~l~~------~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSr-fEPcGL~ql~amry 391 (487)
T COG0297 319 LLEQ------GWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSR-FEPCGLTQLYAMRY 391 (487)
T ss_pred HHHh------CceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCc-CcCCcHHHHHHHHc
Confidence 9884 48999999983 1222332 2355666666677777899999999999997 59999999999999
Q ss_pred CCcEEEeCCCCcccceeec--------CCceeEeCC-CHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHhhhCCHHHH
Q 011355 392 GKPLMATRLASIVGSVIVG--------TDMGYLFSP-QVESVKKALYGIWA---DGREVLEKKGLVARKRGLNLFTATKM 459 (488)
Q Consensus 392 G~PVI~~~~~~~~~e~v~~--------~~~g~l~~~-d~~~la~~i~~ll~---~~~~~~~~~~~~a~~~~~~~fs~~~~ 459 (488)
|+++|+..+||.. +.|.+ ..+|+++.+ |.++++.+|.+.+. +++..++.+..++.. ..|+|++.
T Consensus 392 GtvpIv~~tGGLa-dTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~---~d~sw~~s 467 (487)
T COG0297 392 GTLPIVRETGGLA-DTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG---ADFSWDLS 467 (487)
T ss_pred CCcceEcccCCcc-ceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc---cccCchhH
Confidence 9999999999999 55553 589999999 99999999987765 323336666666655 56999999
Q ss_pred HHHHHHHHHHhhccc
Q 011355 460 AAAYERLFLCISNDE 474 (488)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (488)
+++|.++|+.+.+..
T Consensus 468 a~~y~~lY~~~~~~~ 482 (487)
T COG0297 468 AKEYVELYKPLLSKP 482 (487)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998743
No 69
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.1e-27 Score=218.45 Aligned_cols=383 Identities=17% Similarity=0.163 Sum_probs=279.4
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhhcCCCCCcccCCcccccccccccccccccccccccCCCCCCCCceEEEEEecCCCCCC
Q 011355 11 FRSFCCVFFVLSAFSFISFLYWCHCSGPCYSQNQIMTQKQDKFIDLLWFPSAWNHLSFPSNPPLKLLKIALFVKKWPHRS 90 (488)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~~~p~~~ 90 (488)
++++|++++++++|++..++++|+...+.| ..+|. +|++++....++.--.++++.
T Consensus 1 ~~~lY~~l~~~~~p~~~~~l~~R~~~~~~y---~~r~~---------------eRfg~~~~~~~~~~p~vWiHa------ 56 (419)
T COG1519 1 LRFLYRLLLTLALPFIAPRLLYRSFKGPKY---RKRLG---------------ERFGFYKPPVKPEGPLVWIHA------ 56 (419)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcChHH---HHHHH---------------HHhcccCCCCCCCCCeEEEEe------
Confidence 467999999999999999999999999999 99999 999976444444335688876
Q ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEE
Q 011355 91 HAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVI 168 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 168 (488)
.+-|....+..|+++|.++ ++.+.+.|.++++.+......+....+...| .+.....+++.... +||++
T Consensus 57 aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP-----~D~~~~v~rFl~~~----~P~l~ 127 (419)
T COG1519 57 ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLP-----LDLPIAVRRFLRKW----RPKLL 127 (419)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecC-----cCchHHHHHHHHhc----CCCEE
Confidence 6789899999999999998 7888888877766544332222222333323 56666777777776 99999
Q ss_pred EeCCcchH-----HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcCh
Q 011355 169 HTESVGLR-----HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSD 243 (488)
Q Consensus 169 ~~~~~~~~-----~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~ 243 (488)
++....+| ....+++| ++..--.+ +-.+..-+.+...+.+ ..+++.|.|+++|+
T Consensus 128 Ii~EtElWPnli~e~~~~~~p-~~LvNaRL------------------S~rS~~~y~k~~~~~~--~~~~~i~li~aQse 186 (419)
T COG1519 128 IIMETELWPNLINELKRRGIP-LVLVNARL------------------SDRSFARYAKLKFLAR--LLFKNIDLILAQSE 186 (419)
T ss_pred EEEeccccHHHHHHHHHcCCC-EEEEeeee------------------chhhhHHHHHHHHHHH--HHHHhcceeeecCH
Confidence 88764433 33345667 44332221 1111222333333333 45788999999999
Q ss_pred hhHHHHHHHhcCCCCcEEEecC-CccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhc
Q 011355 244 HCGDVLKRIYMIPEERVHVILN-GVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAEN 322 (488)
Q Consensus 244 ~~~~~~~~~~g~~~~~i~vi~n-gvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~ 322 (488)
..++.+.+ +|.++ +.+..| .+|.+.-+........+|.+++.+ + .+++..+++..+. +.+++++..+++++
T Consensus 187 ~D~~Rf~~-LGa~~--v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~--r-~v~iaaSTH~GEe--ei~l~~~~~l~~~~ 258 (419)
T COG1519 187 EDAQRFRS-LGAKP--VVVTGNLKFDIEPPPQLAAELAALRRQLGGH--R-PVWVAASTHEGEE--EIILDAHQALKKQF 258 (419)
T ss_pred HHHHHHHh-cCCcc--eEEecceeecCCCChhhHHHHHHHHHhcCCC--C-ceEEEecCCCchH--HHHHHHHHHHHhhC
Confidence 99999999 78754 888888 677665555555567788888754 3 5677788754444 34899999999999
Q ss_pred cCCCCCeEEEEEeCCCchh-----HHhh---------------hCCcEEEeCccCHHHHHHHHHhcCE-EEeCCCCCCCC
Q 011355 323 DTFRRSTVFLVAGDGPWGA-----RYRD---------------LGTNVIVLGPLDQTRLAMFYNAIDI-FVNPTLRAQGL 381 (488)
Q Consensus 323 ~~~~~~~~l~ivG~g~~~~-----~~~~---------------l~~~V~~~g~v~~~~l~~~~~~adv-~v~ps~~~eg~ 381 (488)
|+..+++|.++|++- .+++ ...+|.+.+.+. ||..+|..+|+ ||..|..+.|
T Consensus 259 ----~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmG--EL~l~y~~adiAFVGGSlv~~G- 331 (419)
T COG1519 259 ----PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMG--ELGLLYGIADIAFVGGSLVPIG- 331 (419)
T ss_pred ----CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHh--HHHHHHhhccEEEECCcccCCC-
Confidence 999999999998762 1221 124788888977 99999999999 7778886566
Q ss_pred ChHHHHHHHcCCcEEEeC----CCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHH
Q 011355 382 DHTVLEAMLSGKPLMATR----LASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTAT 457 (488)
Q Consensus 382 ~~~~lEAma~G~PVI~~~----~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~ 457 (488)
|..++|+.++|+|||... ...+. +.+...+.|+.++ |.+.+++++..++.+ ++.+++|++++.+.+.++ .
T Consensus 332 GHN~LEpa~~~~pvi~Gp~~~Nf~ei~-~~l~~~ga~~~v~-~~~~l~~~v~~l~~~-~~~r~~~~~~~~~~v~~~---~ 405 (419)
T COG1519 332 GHNPLEPAAFGTPVIFGPYTFNFSDIA-ERLLQAGAGLQVE-DADLLAKAVELLLAD-EDKREAYGRAGLEFLAQN---R 405 (419)
T ss_pred CCChhhHHHcCCCEEeCCccccHHHHH-HHHHhcCCeEEEC-CHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHh---h
Confidence 999999999999999863 34444 4556677888888 788888888888888 999999999999998764 2
Q ss_pred HHHHHHHHHHH
Q 011355 458 KMAAAYERLFL 468 (488)
Q Consensus 458 ~~~~~~~~~~~ 468 (488)
...+++.+.++
T Consensus 406 gal~r~l~~l~ 416 (419)
T COG1519 406 GALARTLEALK 416 (419)
T ss_pred HHHHHHHHHhh
Confidence 34444444443
No 70
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=8.4e-27 Score=227.47 Aligned_cols=337 Identities=12% Similarity=0.045 Sum_probs=223.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCC-----------C-ce-EEEecC-CC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYP-----------I-SS-LYFHLS-KP 140 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----------~-~~-i~~~~~-~~ 140 (488)
+.|||++++.+ ..+|....+..++++|.++|++|++++............ . +. ..+... ..
T Consensus 3 ~~~rili~t~~-----~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 77 (380)
T PRK13609 3 KNPKVLILTAH-----YGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVE 77 (380)
T ss_pred CCCeEEEEEcC-----CCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Confidence 56799999974 345899999999999999999877776554222110000 0 00 000000 00
Q ss_pred CccCc--ch--hHHHHHHHHHHhcCCCCCcEEEeCCcch--HHhhh---ccCCcEEEeeeCCcchhhhhhhhHhhhcCCC
Q 011355 141 TAAGY--LD--QSIVWQQLQTQNSTGKPFDVIHTESVGL--RHTRA---RNLTNVVVSWHGIAYETIHSDIIQELLRTPE 211 (488)
Q Consensus 141 ~~~~~--~~--~~~~~~~~~~~~~~~~~~Dvv~~~~~~~--~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~ 211 (488)
..... .. .......+.+..++. +||+||++.... +...+ .++| ++...++... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~-~pD~Vi~~~~~~~~~~~~~~~~~~ip-~~~~~td~~~--------------~- 140 (380)
T PRK13609 78 KIYDKKIFSWYANFGRKRLKLLLQAE-KPDIVINTFPIIAVPELKKQTGISIP-TYNVLTDFCL--------------H- 140 (380)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHh-CcCEEEEcChHHHHHHHHHhcCCCCC-eEEEeCCCCC--------------C-
Confidence 00000 00 111123344444444 899999986432 22221 2345 5544433210 0
Q ss_pred ChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCC
Q 011355 212 EPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPEN 291 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~ 291 (488)
..++++++|.++++|+..++.+.+ +|++++++.+++++++....... ....++++++++++
T Consensus 141 ----------------~~~~~~~ad~i~~~s~~~~~~l~~-~gi~~~ki~v~G~p~~~~f~~~~--~~~~~~~~~~l~~~ 201 (380)
T PRK13609 141 ----------------KIWVHREVDRYFVATDHVKKVLVD-IGVPPEQVVETGIPIRSSFELKI--NPDIIYNKYQLCPN 201 (380)
T ss_pred ----------------cccccCCCCEEEECCHHHHHHHHH-cCCChhHEEEECcccChHHcCcC--CHHHHHHHcCCCCC
Confidence 003467899999999999999988 79988999998877754332221 23457889999887
Q ss_pred CcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEe-CC-CchhHHhh----hCCcEEEeCccCHHHHHHHH
Q 011355 292 RSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG-DG-PWGARYRD----LGTNVIVLGPLDQTRLAMFY 365 (488)
Q Consensus 292 ~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG-~g-~~~~~~~~----l~~~V~~~g~v~~~~l~~~~ 365 (488)
+++++++.|++...|++..+++++.+. ++++++++| .+ +..+.+++ ..++|+++|+++ ++.++|
T Consensus 202 ~~~il~~~G~~~~~k~~~~li~~l~~~--------~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~--~~~~l~ 271 (380)
T PRK13609 202 KKILLIMAGAHGVLGNVKELCQSLMSV--------PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVE--NIDELF 271 (380)
T ss_pred CcEEEEEcCCCCCCcCHHHHHHHHhhC--------CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechh--hHHHHH
Confidence 767777889998889999888887532 678888764 33 23444443 335899999964 799999
Q ss_pred HhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeC-CCCccc---ceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHH
Q 011355 366 NAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATR-LASIVG---SVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEK 441 (488)
Q Consensus 366 ~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~-~~~~~~---e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~ 441 (488)
+.||++|. ++.|++++|||+||+|||+++ .+|... +.+.+.+.|+... |+++++++|.+++++ ++.+++
T Consensus 272 ~~aD~~v~-----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~-~~~~l~~~i~~ll~~-~~~~~~ 344 (380)
T PRK13609 272 RVTSCMIT-----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR-DDEEVFAKTEALLQD-DMKLLQ 344 (380)
T ss_pred HhccEEEe-----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC-CHHHHHHHHHHHHCC-HHHHHH
Confidence 99999884 233789999999999999976 554321 1233233333332 999999999999998 899999
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Q 011355 442 KGLVARKRGLNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 442 ~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 470 (488)
|++++++.... ++++++++.+.+++...
T Consensus 345 m~~~~~~~~~~-~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 345 MKEAMKSLYLP-EPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHHHHhCCC-chHHHHHHHHHHhhhhh
Confidence 99999887755 79999999998887553
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.96 E-value=3.7e-27 Score=232.95 Aligned_cols=277 Identities=17% Similarity=0.137 Sum_probs=195.6
Q ss_pred CCcEEEeCCcc---hHHhhhccCC--cEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLT--NVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
..|+|++|++. ++..+....| ++...+|-.++.. +.+.- .| ....+. +.+-.+|.+
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~---e~~~~---lp---~~~~ll----------~~~l~~D~i 191 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSS---EIFRC---LP---WREELL----------RGLLGADLI 191 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCCh---HHHhh---CC---ChHHHH----------HHHhcCCEE
Confidence 67999999864 3444443322 2788888653211 11100 01 001111 233458888
Q ss_pred EEcChhhHHHHHHHh----c------------CCCCcEEEecCCccCCCcCCCccc---chhhhhhhCCCCCCcEEEEEE
Q 011355 239 VATSDHCGDVLKRIY----M------------IPEERVHVILNGVDEEVFKPDVAM---GKDFKKKFGIPENRSLVLGMA 299 (488)
Q Consensus 239 i~~S~~~~~~~~~~~----g------------~~~~~i~vi~ngvd~~~~~~~~~~---~~~~r~~~~i~~~~~~~i~~~ 299 (488)
.+.+....+.+.+.. + -...++.++|||||.+.|.+.... ....++..+..+++ .+|+++
T Consensus 192 gF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~il~v 270 (460)
T cd03788 192 GFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGR-KLIVGV 270 (460)
T ss_pred EECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCC-EEEEEe
Confidence 888866555444421 1 123478999999999888654222 12233344555555 788899
Q ss_pred eeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCC-----Cchh----HHhhh--------C----CcEE-EeCccC
Q 011355 300 GRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDG-----PWGA----RYRDL--------G----TNVI-VLGPLD 357 (488)
Q Consensus 300 Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g-----~~~~----~~~~l--------~----~~V~-~~g~v~ 357 (488)
||+++.||++.+++|++.+.+++++++.+++|+++|.+ +..+ .++++ + ..|+ +.|.++
T Consensus 271 gRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~ 350 (460)
T cd03788 271 DRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLP 350 (460)
T ss_pred cCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCC
Confidence 99999999999999999998888222224788888643 2222 22222 1 2354 457889
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCc----EEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKP----LMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIW 432 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~P----VI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll 432 (488)
.+++..+|+.||++|+||.+ ||||++++|||+||+| ||+|+.+|.. +. +.+|+++++ |+++++++|.+++
T Consensus 351 ~~el~~~y~~aDv~v~pS~~-Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~-~~---~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLR-DGMNLVAKEYVACQDDDPGVLILSEFAGAA-EE---LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccc-cccCcccceeEEEecCCCceEEEeccccch-hh---cCCCEEECCCCHHHHHHHHHHHH
Confidence 99999999999999999985 9999999999999999 9999988877 33 578999999 9999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHH
Q 011355 433 ADGREVLEKKGLVARKRGLNLFTATKMAAAYERL 466 (488)
Q Consensus 433 ~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 466 (488)
++++++++.+++++++++.+ ||++..++++.+-
T Consensus 426 ~~~~~e~~~~~~~~~~~v~~-~~~~~w~~~~l~~ 458 (460)
T cd03788 426 TMPLEERRERHRKLREYVRT-HDVQAWANSFLDD 458 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHh
Confidence 98678899999999999854 9999999988653
No 72
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.96 E-value=2e-26 Score=225.54 Aligned_cols=275 Identities=17% Similarity=0.161 Sum_probs=200.1
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
.-|+|++|++. ++..+....|. +...+|-.++. .+++. .+.....-++.+-.+|.|
T Consensus 127 ~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~---~e~f~----------------~lp~r~~il~gll~~dli 187 (456)
T TIGR02400 127 PGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPS---SEIYR----------------TLPWRRELLEGLLAYDLV 187 (456)
T ss_pred CCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCC---hHHHh----------------hCCcHHHHHHHHhcCCEE
Confidence 46899999864 45555554443 56677754221 11111 111111112445689999
Q ss_pred EEcChhhHHHHHHHh----cC-----------CCCcEEEecCCccCCCcCCCccc------chhhhhhhCCCCCCcEEEE
Q 011355 239 VATSDHCGDVLKRIY----MI-----------PEERVHVILNGVDEEVFKPDVAM------GKDFKKKFGIPENRSLVLG 297 (488)
Q Consensus 239 i~~S~~~~~~~~~~~----g~-----------~~~~i~vi~ngvd~~~~~~~~~~------~~~~r~~~~i~~~~~~~i~ 297 (488)
-+.+....+.+.+.. |. ...++.++|||||.+.|.+.... ...+|++++ ++ .+|+
T Consensus 188 gF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~-~vIl 263 (456)
T TIGR02400 188 GFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GR-KLII 263 (456)
T ss_pred EECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CC-eEEE
Confidence 999988887776632 21 34578899999999988653221 124566663 44 6888
Q ss_pred EEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEe-----CCCchhHHh----hh--------C-----CcEEEeCc
Q 011355 298 MAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG-----DGPWGARYR----DL--------G-----TNVIVLGP 355 (488)
Q Consensus 298 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG-----~g~~~~~~~----~l--------~-----~~V~~~g~ 355 (488)
++||+++.||++.+++|++.+.+++++.+.++.|+++| +++..+.++ ++ + +-+.+.|.
T Consensus 264 ~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~ 343 (456)
T TIGR02400 264 GVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRS 343 (456)
T ss_pred EccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCC
Confidence 99999999999999999999988883222346788775 333332222 22 0 12344568
Q ss_pred cCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCc----EEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHH
Q 011355 356 LDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKP----LMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYG 430 (488)
Q Consensus 356 v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~P----VI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ 430 (488)
++.+++..+|+.||++++||.+ ||||++++||||||+| ||+|+.+|.. +.+. +|++++| |+++++++|.+
T Consensus 344 ~~~~el~aly~aaDv~vv~S~~-EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-~~l~---~gllVnP~d~~~lA~aI~~ 418 (456)
T TIGR02400 344 YDREELMALYRAADVGLVTPLR-DGMNLVAKEYVAAQDPKDGVLILSEFAGAA-QELN---GALLVNPYDIDGMADAIAR 418 (456)
T ss_pred CCHHHHHHHHHhCcEEEECccc-cccCccHHHHHHhcCCCCceEEEeCCCCCh-HHhC---CcEEECCCCHHHHHHHHHH
Confidence 8999999999999999999985 9999999999999999 9999999987 4442 7999999 99999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 011355 431 IWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 431 ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
++++++++++++.+++++++.+ ||+...++++.+-+
T Consensus 419 aL~~~~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 419 ALTMPLEEREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred HHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 9998789999999999999866 89999999987644
No 73
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.95 E-value=3.8e-26 Score=220.78 Aligned_cols=318 Identities=20% Similarity=0.153 Sum_probs=212.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCCCccCcc-------hh
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKPTAAGYL-------DQ 148 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~-------~~ 148 (488)
+|++.+. ..||..+.+..++++|.++||+|++++.......... .+.....+..........+ ..
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKL 74 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHH
Confidence 3555554 6689999999999999999999999988653222111 1223223322211001111 11
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeCCcc--hH---HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHH
Q 011355 149 SIVWQQLQTQNSTGKPFDVIHTESVG--LR---HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERAS 223 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Dvv~~~~~~--~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
...+..+.+..++. +||+||+++.. +. .....++| ++...|+.. + .. ..
T Consensus 75 ~~~~~~~~~~i~~~-~pDvI~~~~~~~~~~~~~~a~~~~~p-~v~~~~~~~---------------~-----~~----~~ 128 (350)
T cd03785 75 LKGVLQARKILKKF-KPDVVVGFGGYVSGPVGLAAKLLGIP-LVIHEQNAV---------------P-----GL----AN 128 (350)
T ss_pred HHHHHHHHHHHHhc-CCCEEEECCCCcchHHHHHHHHhCCC-EEEEcCCCC---------------c-----cH----HH
Confidence 22223334444444 89999998632 22 12223456 554333311 0 00 11
Q ss_pred HHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeec
Q 011355 224 KVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLV 303 (488)
Q Consensus 224 ~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~ 303 (488)
+ ..++.+|.++++|+...+. ++..++.+++||+|.+.+.... .++++++++++ .+++++|+..
T Consensus 129 ~-----~~~~~~~~vi~~s~~~~~~------~~~~~~~~i~n~v~~~~~~~~~-----~~~~~~~~~~~-~~i~~~~g~~ 191 (350)
T cd03785 129 R-----LLARFADRVALSFPETAKY------FPKDKAVVTGNPVREEILALDR-----ERARLGLRPGK-PTLLVFGGSQ 191 (350)
T ss_pred H-----HHHHhhCEEEEcchhhhhc------CCCCcEEEECCCCchHHhhhhh-----hHHhcCCCCCC-eEEEEECCcH
Confidence 1 2335689999999988765 3568999999999987664421 17778887777 5666777666
Q ss_pred cccChHH-HHHHHHHhHhhccCCCCCeE-EEEEeCCCchhHHhh----hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC
Q 011355 304 KDKGHPL-MFEALKQLLAENDTFRRSTV-FLVAGDGPWGARYRD----LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 304 ~~Kg~~~-ll~a~~~l~~~~~~~~~~~~-l~ivG~g~~~~~~~~----l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 377 (488)
..|+... +++++..+.+ +++. ++++|+|. .+.+++ +.++|++.|++ +++.++|+.||++|.++
T Consensus 192 ~~~~~~~~l~~a~~~l~~------~~~~~~~i~G~g~-~~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~v~~s-- 260 (350)
T cd03785 192 GARAINEAVPEALAELLR------KRLQVIHQTGKGD-LEEVKKAYEELGVNYEVFPFI--DDMAAAYAAADLVISRA-- 260 (350)
T ss_pred hHHHHHHHHHHHHHHhhc------cCeEEEEEcCCcc-HHHHHHHHhccCCCeEEeehh--hhHHHHHHhcCEEEECC--
Confidence 6677654 5588887763 3555 45778873 344433 33689999996 69999999999999755
Q ss_pred CCCCChHHHHHHHcCCcEEEeCCCCc--------ccceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011355 378 AQGLDHTVLEAMLSGKPLMATRLASI--------VGSVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKKGLVA 446 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~~~~~~--------~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~a 446 (488)
| +++++|||++|+|||+++.++. . +.+.+.++|+++++ |+++++++|.+++++ ++.+++|++++
T Consensus 261 --g-~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~-~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~ 335 (350)
T cd03785 261 --G-ASTVAELAALGLPAILIPLPYAADDHQTANA-RALVKAGAAVLIPQEELTPERLAAALLELLSD-PERLKAMAEAA 335 (350)
T ss_pred --C-HhHHHHHHHhCCCEEEeecCCCCCCcHHHhH-HHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 2 5799999999999999876541 2 45667789999985 699999999999988 99999999999
Q ss_pred HHHHhhhCCHHHHHH
Q 011355 447 RKRGLNLFTATKMAA 461 (488)
Q Consensus 447 ~~~~~~~fs~~~~~~ 461 (488)
++++.. +..+++++
T Consensus 336 ~~~~~~-~~~~~i~~ 349 (350)
T cd03785 336 RSLARP-DAAERIAD 349 (350)
T ss_pred HhcCCC-CHHHHHHh
Confidence 998854 67776654
No 74
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.95 E-value=5.1e-25 Score=213.73 Aligned_cols=217 Identities=19% Similarity=0.130 Sum_probs=157.7
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChH
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHP 309 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~ 309 (488)
..++++|.|+++|+...+.+.+ ++ .++++++||+|.+.|.+........+... ..++ ++++|+|++.+.++++
T Consensus 149 ~~~~~ad~vi~~S~~l~~~~~~-~~---~~i~~i~ngvd~~~f~~~~~~~~~~~~~~--~~~~-~~i~y~G~l~~~~d~~ 221 (373)
T cd04950 149 RLLKRADLVFTTSPSLYEAKRR-LN---PNVVLVPNGVDYEHFAAARDPPPPPADLA--ALPR-PVIGYYGAIAEWLDLE 221 (373)
T ss_pred HHHHhCCEEEECCHHHHHHHhh-CC---CCEEEcccccCHHHhhcccccCCChhHHh--cCCC-CEEEEEeccccccCHH
Confidence 5678999999999999998877 44 68999999999988865432211111111 1233 7899999999977776
Q ss_pred HHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh--CCcEEEeCccCHHHHHHHHHhcCEEEeCCCC----CCCCCh
Q 011355 310 LMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL--GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR----AQGLDH 383 (488)
Q Consensus 310 ~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~----~eg~~~ 383 (488)
.+.++.+ .. |+++|+++|.++.......+ .+||+++|.++.+++..+|+.+|++++|+.. .+++|+
T Consensus 222 ll~~la~----~~----p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~ 293 (373)
T cd04950 222 LLEALAK----AR----PDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPL 293 (373)
T ss_pred HHHHHHH----HC----CCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcc
Confidence 5544333 34 89999999987332222222 3799999999999999999999999999853 246899
Q ss_pred HHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 384 TVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 384 ~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
+++||||||+|||+++.+++. ...+.+++++.|+++++++|.+++.++...... ++++ +.+.|||++.++++
T Consensus 294 Kl~EylA~G~PVVat~~~~~~----~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~---~~~~-~~~~~sW~~~a~~~ 365 (373)
T cd04950 294 KLFEYLAAGKPVVATPLPEVR----RYEDEVVLIADDPEEFVAAIEKALLEDGPARER---RRLR-LAAQNSWDARAAEM 365 (373)
T ss_pred hHHHHhccCCCEEecCcHHHH----hhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHH---HHHH-HHHHCCHHHHHHHH
Confidence 999999999999999875543 333445555448999999999976652322222 2222 44568999999999
Q ss_pred HHHHHH
Q 011355 464 ERLFLC 469 (488)
Q Consensus 464 ~~~~~~ 469 (488)
.+.+.+
T Consensus 366 ~~~l~~ 371 (373)
T cd04950 366 LEALQE 371 (373)
T ss_pred HHHHHh
Confidence 866554
No 75
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.95 E-value=9.2e-26 Score=218.32 Aligned_cols=302 Identities=15% Similarity=0.115 Sum_probs=195.1
Q ss_pred CCcEEEeCCcc----hHHhh--hccCCcEEEeeeCCcchhh-hhh---hhHhhhcCCCChhHHHHHHHHHHHHHHhhhcC
Q 011355 164 PFDVIHTESVG----LRHTR--ARNLTNVVVSWHGIAYETI-HSD---IIQELLRTPEEPQAYALAERASKVVEEVKFFP 233 (488)
Q Consensus 164 ~~Dvv~~~~~~----~~~~~--~~~~p~~v~~~h~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (488)
++|++|+|.+. +.... ...+| .+.+.|....-.. +.. ++..+........ ..-.....+...|.....
T Consensus 148 ~~dViH~HeWm~g~a~~~lK~~~~~Vp-tVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~e-A~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 148 PAVVAHFHEWQAGVGLPLLRKRKVDVS-TIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKE-AGKRGIYHRYCIERAAAH 225 (590)
T ss_pred CCeEEEEcchhHhHHHHHHHHhCCCCC-EEEEecccccccccccCCcccchhhhhcchhhh-hhcccchHHHHHHHHHHh
Confidence 79999999742 22222 12456 9999997543221 111 1111100000000 000011122223445678
Q ss_pred CccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCccc---------------chhhhhhhCCCCCCcEEEEE
Q 011355 234 KYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAM---------------GKDFKKKFGIPENRSLVLGM 298 (488)
Q Consensus 234 ~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~---------------~~~~r~~~~i~~~~~~~i~~ 298 (488)
.||.++++|+.+++.+...|+.++++ |||||+|...|....+. +..++.++++++++++++..
T Consensus 226 ~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f~ 303 (590)
T cd03793 226 CAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFFT 303 (590)
T ss_pred hCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEEE
Confidence 89999999999999999999998877 99999999998765421 23467778887777444444
Q ss_pred Eeeecc-ccChHHHHHHHHHhHhhccCCCCC---eEEEEEeCCCc-----------------------------------
Q 011355 299 AGRLVK-DKGHPLMFEALKQLLAENDTFRRS---TVFLVAGDGPW----------------------------------- 339 (488)
Q Consensus 299 ~Grl~~-~Kg~~~ll~a~~~l~~~~~~~~~~---~~l~ivG~g~~----------------------------------- 339 (488)
+||++. +||++.+|+|+.++......-..+ +-|+++.....
T Consensus 304 ~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~ 383 (590)
T cd03793 304 AGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEAA 383 (590)
T ss_pred eeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhHh
Confidence 899988 999999999999887621000022 23444432200
Q ss_pred -------hhHH---------h--------------------------------h--h----CC--cEEEeC-ccC-----
Q 011355 340 -------GARY---------R--------------------------------D--L----GT--NVIVLG-PLD----- 357 (488)
Q Consensus 340 -------~~~~---------~--------------------------------~--l----~~--~V~~~g-~v~----- 357 (488)
.+++ + . | .+ +|+|.+ +++
T Consensus 384 l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~ 463 (590)
T cd03793 384 LKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPL 463 (590)
T ss_pred hccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCc
Confidence 0000 0 0 1 12 255554 222
Q ss_pred -HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcc---cceeecC-CceeEeC-------C-CHHHH
Q 011355 358 -QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIV---GSVIVGT-DMGYLFS-------P-QVESV 424 (488)
Q Consensus 358 -~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~---~e~v~~~-~~g~l~~-------~-d~~~l 424 (488)
..+..++|+.||++|+||.+ ||||++++|||+||+|||+|+.+|.. .|++.++ ..|+.+. + +++++
T Consensus 464 ~g~~y~E~~~g~dl~v~PS~y-E~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 464 LGLDYEEFVRGCHLGVFPSYY-EPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred CCcchHHHhhhceEEEecccc-CCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 33577899999999999986 99999999999999999999999883 1455444 3566665 3 68899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 425 KKALYGIWADGREVLEKKGLVAR-KRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 425 a~~i~~ll~~~~~~~~~~~~~a~-~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
+++|.++++. +.++.+.+++. +...+.|+|+++++.|.+.|+..+.
T Consensus 543 a~~m~~~~~~--~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 543 TQYMYEFCQL--SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHhCC--cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 9999998855 45555555543 3344669999999999999987654
No 76
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=1.2e-25 Score=218.95 Aligned_cols=342 Identities=12% Similarity=0.067 Sum_probs=226.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC---eEEEEecCCCCCCCCC-----------CCCceEE-EecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH---ELHIFTASCLNCSFPT-----------YPISSLY-FHLSK 139 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~---~V~v~~~~~~~~~~~~-----------~~~~~i~-~~~~~ 139 (488)
+.|||++++.+ ..+|....+..|.++|.+.|. +|.++-.-........ ...+.+. ..+..
T Consensus 4 ~~~~vlil~~~-----~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~ 78 (391)
T PRK13608 4 QNKKILIITGS-----FGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYS 78 (391)
T ss_pred CCceEEEEECC-----CCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 45799999973 457888889999999988754 4554432211111111 0111111 00000
Q ss_pred CC-c-cCcchhHHHHHHHHHHhcCCCCCcEEEeCCcchHHh--h---hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCC
Q 011355 140 PT-A-AGYLDQSIVWQQLQTQNSTGKPFDVIHTESVGLRHT--R---ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEE 212 (488)
Q Consensus 140 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~--~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~ 212 (488)
.. . ...+.....+..+.+..++. +||+|+++.+..... . ..++| ++....+.. .|
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~-kPDvVi~~~p~~~~~~l~~~~~~~iP-~~~v~td~~---~~------------- 140 (391)
T PRK13608 79 RPDKLDKCFYKYYGLNKLINLLIKE-KPDLILLTFPTPVMSVLTEQFNINIP-VATVMTDYR---LH------------- 140 (391)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHh-CcCEEEECCcHHHHHHHHHhcCCCCC-EEEEeCCCC---cc-------------
Confidence 00 0 00001111123344444444 999999976432222 1 12456 544333320 00
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCC
Q 011355 213 PQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENR 292 (488)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~ 292 (488)
..+..+.+|.+++.|+.+++.+.+ .|++.+++.+++++++..+.... .....++++++++++
T Consensus 141 ---------------~~w~~~~~d~~~v~s~~~~~~l~~-~gi~~~ki~v~GiPv~~~f~~~~--~~~~~~~~~~l~~~~ 202 (391)
T PRK13608 141 ---------------KNWITPYSTRYYVATKETKQDFID-VGIDPSTVKVTGIPIDNKFETPI--DQKQWLIDNNLDPDK 202 (391)
T ss_pred ---------------cccccCCCCEEEECCHHHHHHHHH-cCCCHHHEEEECeecChHhcccc--cHHHHHHHcCCCCCC
Confidence 003357899999999999999988 69999999999888875433222 235677889998877
Q ss_pred cEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEE-eCCC-chhHHhh---hCCcEEEeCccCHHHHHHHHHh
Q 011355 293 SLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVA-GDGP-WGARYRD---LGTNVIVLGPLDQTRLAMFYNA 367 (488)
Q Consensus 293 ~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-G~g~-~~~~~~~---l~~~V~~~g~v~~~~l~~~~~~ 367 (488)
+.++++.|++...||++.+++++. +.. ++++++++ |+++ ..+.+++ ..++|+++|++ +++.++|+.
T Consensus 203 ~~ilv~~G~lg~~k~~~~li~~~~---~~~----~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~--~~~~~~~~~ 273 (391)
T PRK13608 203 QTILMSAGAFGVSKGFDTMITDIL---AKS----ANAQVVMICGKSKELKRSLTAKFKSNENVLILGYT--KHMNEWMAS 273 (391)
T ss_pred CEEEEECCCcccchhHHHHHHHHH---hcC----CCceEEEEcCCCHHHHHHHHHHhccCCCeEEEecc--chHHHHHHh
Confidence 677778999998899999999853 233 67888655 5443 2233433 23689999996 489999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeC-CCCccc---ceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHH
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATR-LASIVG---SVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKG 443 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~-~~~~~~---e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~ 443 (488)
||++|.. +.|+++.|||++|+|+|+++ .++..+ ..+.+.+.|+... |.++++++|.+++++ ++.+++|+
T Consensus 274 aDl~I~k-----~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~-~~~~l~~~i~~ll~~-~~~~~~m~ 346 (391)
T PRK13608 274 SQLMITK-----PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD-TPEEAIKIVASLTNG-NEQLTNMI 346 (391)
T ss_pred hhEEEeC-----CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC-CHHHHHHHHHHHhcC-HHHHHHHH
Confidence 9999962 23789999999999999986 333110 2334556676655 999999999999998 89999999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHhhccc
Q 011355 444 LVARKRGLNLFTATKMAAAYERLFLCISNDE 474 (488)
Q Consensus 444 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 474 (488)
+++++.... |+++.+++.+.++++.+....
T Consensus 347 ~~~~~~~~~-~s~~~i~~~l~~l~~~~~~~~ 376 (391)
T PRK13608 347 STMEQDKIK-YATQTICRDLLDLIGHSSQPQ 376 (391)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHhhhhhhhh
Confidence 999998765 899999999999998766543
No 77
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.95 E-value=2.7e-25 Score=214.71 Aligned_cols=318 Identities=18% Similarity=0.134 Sum_probs=200.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCC--CCCCCceEEEecCCCCccCc-------ch
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSF--PTYPISSLYFHLSKPTAAGY-------LD 147 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~-------~~ 147 (488)
|||++++. ..||.......|+++|.++||+|++++........ ...+.+...+........+. +.
T Consensus 1 ~~i~~~~g------~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~ 74 (348)
T TIGR01133 1 KKVVLAAG------GTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLK 74 (348)
T ss_pred CeEEEEeC------ccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHH
Confidence 68998886 45666667779999999999999999864321111 11223333333221111111 11
Q ss_pred hHHHHHHHHHHhcCCCCCcEEEeCCcc--hHH---hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 148 QSIVWQQLQTQNSTGKPFDVIHTESVG--LRH---TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
.......+.+..++. +||+||+++.. +.. ....++| ++...++.. + ...
T Consensus 75 ~~~~~~~l~~~i~~~-~pDvVi~~~~~~~~~~~~~~~~~~~p-~v~~~~~~~---------------~-----~~~---- 128 (348)
T TIGR01133 75 LLKAVFQARRILKKF-KPDAVIGFGGYVSGPAGLAAKLLGIP-LFHHEQNAV---------------P-----GLT---- 128 (348)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEcCCcccHHHHHHHHHcCCC-EEEECCCCC---------------c-----cHH----
Confidence 122233333334444 89999998632 221 2223445 543222110 0 011
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
.+ ..++.+|.++++|+.+.+.+ +..+++||+|...+.+.. .+++++++++. ++++++|+.
T Consensus 129 ~~-----~~~~~~d~ii~~~~~~~~~~---------~~~~i~n~v~~~~~~~~~-----~~~~~~~~~~~-~~i~~~gg~ 188 (348)
T TIGR01133 129 NK-----LLSRFAKKVLISFPGAKDHF---------EAVLVGNPVRQEIRSLPV-----PRERFGLREGK-PTILVLGGS 188 (348)
T ss_pred HH-----HHHHHhCeeEECchhHhhcC---------CceEEcCCcCHHHhcccc-----hhhhcCCCCCC-eEEEEECCc
Confidence 11 23456899999999776654 237999999876553321 13456777666 778899887
Q ss_pred ccccChHH-HHHHHHHhHhhccCCCCCeEE-EEEeCCCchhHHhhh-C-Cc-EEEeCccCHHHHHHHHHhcCEEEeCCCC
Q 011355 303 VKDKGHPL-MFEALKQLLAENDTFRRSTVF-LVAGDGPWGARYRDL-G-TN-VIVLGPLDQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 303 ~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~l-~ivG~g~~~~~~~~l-~-~~-V~~~g~v~~~~l~~~~~~adv~v~ps~~ 377 (488)
...|++.. ++++++.+.+. +.++ +++|+++. +.+++. . .+ .....+... ++.++|+.||++|.++
T Consensus 189 ~~~~~~~~~l~~a~~~l~~~------~~~~~~~~g~~~~-~~l~~~~~~~~l~~~v~~~~~-~~~~~l~~ad~~v~~~-- 258 (348)
T TIGR01133 189 QGAKILNELVPKALAKLAEK------GIQIVHQTGKNDL-EKVKNVYQELGIEAIVTFIDE-NMAAAYAAADLVISRA-- 258 (348)
T ss_pred hhHHHHHHHHHHHHHHHhhc------CcEEEEECCcchH-HHHHHHHhhCCceEEecCccc-CHHHHHHhCCEEEECC--
Confidence 77888654 55888877653 3444 45555543 444431 1 11 122223323 8999999999999754
Q ss_pred CCCCChHHHHHHHcCCcEEEeCCCCccc------ceeecCCceeEeCC-C--HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011355 378 AQGLDHTVLEAMLSGKPLMATRLASIVG------SVIVGTDMGYLFSP-Q--VESVKKALYGIWADGREVLEKKGLVARK 448 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~~~~~~~~------e~v~~~~~g~l~~~-d--~~~la~~i~~ll~~~~~~~~~~~~~a~~ 448 (488)
| |++++|||++|+|+|+++.++..+ +++.++++|+++++ | +++++++|.+++++ ++.+++|++++++
T Consensus 259 --g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~ 334 (348)
T TIGR01133 259 --G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD-PANLEAMAEAARK 334 (348)
T ss_pred --C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC-HHHHHHHHHHHHh
Confidence 3 689999999999999998765321 46778899999987 6 99999999999998 9999999999998
Q ss_pred HHhhhCCHHHHHH
Q 011355 449 RGLNLFTATKMAA 461 (488)
Q Consensus 449 ~~~~~fs~~~~~~ 461 (488)
++.+ ...+++++
T Consensus 335 ~~~~-~~~~~i~~ 346 (348)
T TIGR01133 335 LAKP-DAAKRIAE 346 (348)
T ss_pred cCCc-cHHHHHHh
Confidence 8855 45665554
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.95 E-value=3.7e-25 Score=215.25 Aligned_cols=221 Identities=14% Similarity=0.146 Sum_probs=173.7
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChH
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHP 309 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~ 309 (488)
++.+.+|.++++|+..++.+.+ +|++++++.+++++++.++.... ..+..+|+++|+++++ ++++++|+....|++.
T Consensus 146 w~~~~~d~~~~~s~~~~~~l~~-~g~~~~ki~v~g~~v~~~f~~~~-~~~~~~r~~~gl~~~~-~~il~~Gg~~g~~~~~ 222 (382)
T PLN02605 146 WFHKGVTRCFCPSEEVAKRALK-RGLEPSQIRVYGLPIRPSFARAV-RPKDELRRELGMDEDL-PAVLLMGGGEGMGPLE 222 (382)
T ss_pred cccCCCCEEEECCHHHHHHHHH-cCCCHHHEEEECcccCHhhccCC-CCHHHHHHHcCCCCCC-cEEEEECCCcccccHH
Confidence 4467899999999999999988 69999999999999987654332 3456789999998877 7788999998999999
Q ss_pred HHHHHHHHhHh----hccCCCCCeE-EEEEeCCC-chhHHhhh--CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCC
Q 011355 310 LMFEALKQLLA----ENDTFRRSTV-FLVAGDGP-WGARYRDL--GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGL 381 (488)
Q Consensus 310 ~ll~a~~~l~~----~~~~~~~~~~-l~ivG~g~-~~~~~~~l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~ 381 (488)
.+++++..+.. .. ++.+ ++++|+++ ..+.+++. ..+|+++|+++ ++.++|++||++|.++ |
T Consensus 223 ~li~~l~~~~~~~~~~~----~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~--~~~~l~~aaDv~V~~~----g- 291 (382)
T PLN02605 223 ETARALGDSLYDKNLGK----PIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVT--NMEEWMGACDCIITKA----G- 291 (382)
T ss_pred HHHHHHHHhhccccccC----CCceEEEEECCCHHHHHHHHhhcccCCeEEEeccc--cHHHHHHhCCEEEECC----C-
Confidence 99999976541 12 4554 67888764 34555543 35799999975 8999999999999854 2
Q ss_pred ChHHHHHHHcCCcEEEeCCC-----CcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCH
Q 011355 382 DHTVLEAMLSGKPLMATRLA-----SIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 382 ~~~~lEAma~G~PVI~~~~~-----~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
|++++|||+||+|+|+++.. +.. +.+.+++.|+.+. |+++++++|.++++++++.+++|++++++.... .+.
T Consensus 292 ~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~~~-~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~-~a~ 368 (382)
T PLN02605 292 PGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAFSE-SPKEIARIVAEWFGDKSDELEAMSENALKLARP-EAV 368 (382)
T ss_pred cchHHHHHHcCCCEEEecCCCccchhhH-HHHHhCCceeecC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-chH
Confidence 67999999999999999842 112 3345566777654 999999999999986578899999999998866 578
Q ss_pred HHHHHHHHHHH
Q 011355 457 TKMAAAYERLF 467 (488)
Q Consensus 457 ~~~~~~~~~~~ 467 (488)
+.+++.+.++.
T Consensus 369 ~~i~~~l~~~~ 379 (382)
T PLN02605 369 FDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHHHh
Confidence 88887776553
No 79
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.94 E-value=1.2e-24 Score=206.35 Aligned_cols=390 Identities=17% Similarity=0.127 Sum_probs=262.5
Q ss_pred CCCCCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH---------CCCeEEEEecCCCCCCCCC---------CC-C
Q 011355 70 SNPPLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAK---------RGHELHIFTASCLNCSFPT---------YP-I 130 (488)
Q Consensus 70 ~~~~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~---------~G~~V~v~~~~~~~~~~~~---------~~-~ 130 (488)
+++.+..++++++++ ....||.++-....+-.+.. .|++|.+++.......... .. .
T Consensus 28 ~t~~~~~~~~~~~~~----~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~ 103 (495)
T KOG0853|consen 28 STPEKPFEHVTFIHP----DLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTP 103 (495)
T ss_pred ccccccchhheeecc----ccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCC
Confidence 444556788999987 44789999998888888888 9999999998765542111 22 1
Q ss_pred ceEEEecCCCCccC-cchh----------HHHHHHHHHHhcCCCCCcEEEeCCcchHHhhhc--c----CCcEEEeeeCC
Q 011355 131 SSLYFHLSKPTAAG-YLDQ----------SIVWQQLQTQNSTGKPFDVIHTESVGLRHTRAR--N----LTNVVVSWHGI 193 (488)
Q Consensus 131 ~~i~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~~--~----~p~~v~~~h~~ 193 (488)
+...+-...|...+ .... ...+....+.. . +.|+++........++.. . ++++.++.|..
T Consensus 104 ~i~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~--~-~~d~~i~d~~~~~~~l~~~~~~p~~~~~i~~~~h~~ 180 (495)
T KOG0853|consen 104 PILVVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWA--E-KVDPIIEDFVSACVPLLKQLSGPDVIIKIYFYCHFP 180 (495)
T ss_pred ceEEEEeecCcccchhhhhhhccceeEEEEeccchhhhhh--h-hhceeecchHHHHHHHHHHhcCCcccceeEEeccch
Confidence 22222111121111 0000 00010111111 1 678888875433222221 1 34366667765
Q ss_pred cchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHh-cCCCCcEEEecCCccCCCc
Q 011355 194 AYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIY-MIPEERVHVILNGVDEEVF 272 (488)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~-g~~~~~i~vi~ngvd~~~~ 272 (488)
.-...+... ..+.+++......+ ......++.+++.|...+..+...+ .++..++.+++..+|.+.+
T Consensus 181 ~~lla~r~g-----------~~~~l~~~~l~~~e-~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~ 248 (495)
T KOG0853|consen 181 DSLLAKRLG-----------VLKVLYRHALDKIE-EETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWF 248 (495)
T ss_pred HHHhccccC-----------ccceeehhhhhhhh-hhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhc
Confidence 333322210 00122222211111 1446788999999999999998865 3555568899999998776
Q ss_pred CC-----CcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccC-CCCCeEEEEEeCC-------Cc
Q 011355 273 KP-----DVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDT-FRRSTVFLVAGDG-------PW 339 (488)
Q Consensus 273 ~~-----~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~-~~~~~~l~ivG~g-------~~ 339 (488)
.+ ..+.+...|.+.+....+ ..+..+.++.+.||++.+++++..+....++ -.++.+++++|+. +.
T Consensus 249 ~~~~~~~~~~~~~~~r~~~~v~~~d-~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen 327 (495)
T KOG0853|consen 249 TYGQYESHLELRLPVRLYRGVSGID-RFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSEN 327 (495)
T ss_pred cccccccchhcccccceeeeecccc-eEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhh
Confidence 54 222334455556666555 6778899999999999999999999887621 0135788888832 11
Q ss_pred hhHHhh----------hCCcEEEeCccCHHHHHHHHHhcCE-EEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccccee
Q 011355 340 GARYRD----------LGTNVIVLGPLDQTRLAMFYNAIDI-FVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVI 408 (488)
Q Consensus 340 ~~~~~~----------l~~~V~~~g~v~~~~l~~~~~~adv-~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v 408 (488)
...+++ .++.|.|+...++.+...+++.+.+ +..|. .|.||++++|||+||+|||+++.||.. |++
T Consensus 328 ~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa--~E~FGiv~IEAMa~glPvvAt~~GGP~-EiV 404 (495)
T KOG0853|consen 328 VEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPA--NEHFGIVPIEAMACGLPVVATNNGGPA-EIV 404 (495)
T ss_pred HHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCC--CCCccceeHHHHhcCCCEEEecCCCce-EEE
Confidence 122222 2577889898777777666667766 44566 399999999999999999999999988 999
Q ss_pred ecCCceeEeCCCHH---HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhccccCCCCCccc
Q 011355 409 VGTDMGYLFSPQVE---SVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISNDEKNGENNCKY 483 (488)
Q Consensus 409 ~~~~~g~l~~~d~~---~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (488)
.++.+|++++++.+ .+++++.++..| ++.+.+|++++++++.+.|+|.++.+++.++........+.+...|..
T Consensus 405 ~~~~tG~l~dp~~e~~~~~a~~~~kl~~~-p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~~~~~~~~~~~~~ 481 (495)
T KOG0853|consen 405 VHGVTGLLIDPGQEAVAELADALLKLRRD-PELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYLQWEKVSSLDSLE 481 (495)
T ss_pred EcCCcceeeCCchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcCCccccccccccc
Confidence 99999999999555 799999999999 999999999999999999999999999999998877655554444433
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.94 E-value=1.8e-25 Score=192.91 Aligned_cols=162 Identities=31% Similarity=0.576 Sum_probs=142.0
Q ss_pred hhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhh-ccCCCCCeEEEEEeCCCchhHHhh------hCCcEEE
Q 011355 280 KDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAE-NDTFRRSTVFLVAGDGPWGARYRD------LGTNVIV 352 (488)
Q Consensus 280 ~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~-~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~ 352 (488)
...+.+.+.+.++ ++++++|++.+.||++.+++++..+.++ . +++.++|+|.++....++. +.++|++
T Consensus 3 ~~~~~~~~~~~~~-~~il~~g~~~~~K~~~~li~a~~~l~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~ 77 (172)
T PF00534_consen 3 DKLREKLKIPDKK-KIILFIGRLDPEKGIDLLIEAFKKLKEKKN----PNYKLVIVGDGEYKKELKNLIEKLNLKENIIF 77 (172)
T ss_dssp HHHHHHTTT-TTS-EEEEEESESSGGGTHHHHHHHHHHHHHHHH----TTEEEEEESHCCHHHHHHHHHHHTTCGTTEEE
T ss_pred HHHHHHcCCCCCC-eEEEEEecCccccCHHHHHHHHHHHHhhcC----CCeEEEEEcccccccccccccccccccccccc
Confidence 4566777776666 8999999999999999999999999875 6 8999999997766544443 4479999
Q ss_pred eCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHH
Q 011355 353 LGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGI 431 (488)
Q Consensus 353 ~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~l 431 (488)
.|.++.+++..+|+.||++|+||.. |++|++++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.++
T Consensus 78 ~~~~~~~~l~~~~~~~di~v~~s~~-e~~~~~~~Ea~~~g~pvI~~~~~~~~-e~~~~~~~g~~~~~~~~~~l~~~i~~~ 155 (172)
T PF00534_consen 78 LGYVPDDELDELYKSSDIFVSPSRN-EGFGLSLLEAMACGCPVIASDIGGNN-EIINDGVNGFLFDPNDIEELADAIEKL 155 (172)
T ss_dssp EESHSHHHHHHHHHHTSEEEE-BSS-BSS-HHHHHHHHTT-EEEEESSTHHH-HHSGTTTSEEEESTTSHHHHHHHHHHH
T ss_pred cccccccccccccccceeccccccc-cccccccccccccccceeeccccCCc-eeeccccceEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999999999985 99999999999999999999999987 99999999999999 999999999999
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 011355 432 WADGREVLEKKGLVARKR 449 (488)
Q Consensus 432 l~~~~~~~~~~~~~a~~~ 449 (488)
+++ ++.++.|+++++++
T Consensus 156 l~~-~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 156 LND-PELRQKLGKNARER 172 (172)
T ss_dssp HHH-HHHHHHHHHHHHHH
T ss_pred HCC-HHHHHHHHHHhcCC
Confidence 999 89999999999875
No 81
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.93 E-value=3.1e-22 Score=176.73 Aligned_cols=370 Identities=15% Similarity=0.141 Sum_probs=244.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCCCCC------------CCCceEEEecCC-----
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCLNCSFPT------------YPISSLYFHLSK----- 139 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~------------~~~~~i~~~~~~----- 139 (488)
.++|+++. ....||+|+.+..-++.+++. -..+.|+..++.+..... .+...+.+...+
T Consensus 45 tvgfFHPY---CNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lV 121 (465)
T KOG1387|consen 45 TVGFFHPY---CNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLV 121 (465)
T ss_pred EEEEeccc---ccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeee
Confidence 57888854 457889999999999999876 223444444332222111 122233332211
Q ss_pred --CCccCcchhHHHH----HHHHHHhcCCCCCcEEEeCC---cchHHhh-hccCCcEEEeeeCCcchhhhhhhhHhhhcC
Q 011355 140 --PTAAGYLDQSIVW----QQLQTQNSTGKPFDVIHTES---VGLRHTR-ARNLTNVVVSWHGIAYETIHSDIIQELLRT 209 (488)
Q Consensus 140 --~~~~~~~~~~~~~----~~~~~~~~~~~~~Dvv~~~~---~~~~~~~-~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~ 209 (488)
..+........+. -.+.... +. .||+.+-.. ...+... ..++| ++...|-.. ...++.......
T Consensus 122 ea~~~~hfTllgQaigsmIl~~Eai~-r~-~Pdi~IDtMGY~fs~p~~r~l~~~~-V~aYvHYP~---iS~DML~~l~qr 195 (465)
T KOG1387|consen 122 EASTWKHFTLLGQAIGSMILAFEAII-RF-PPDIFIDTMGYPFSYPIFRRLRRIP-VVAYVHYPT---ISTDMLKKLFQR 195 (465)
T ss_pred ecccccceehHHHHHHHHHHHHHHHH-hC-CchheEecCCCcchhHHHHHHccCc-eEEEEeccc---ccHHHHHHHHhh
Confidence 1111111111111 1111122 22 899987642 2334444 45667 888888543 234444444333
Q ss_pred CCChh---HHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhh
Q 011355 210 PEEPQ---AYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKF 286 (488)
Q Consensus 210 ~~~~~---~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~ 286 (488)
+.... .+..+.++...... ..-..+|.+++.|.|+.+++.+.++. .++++++++++.+.. .+..
T Consensus 196 q~s~~l~~~KlaY~rlFa~lY~-~~G~~ad~vm~NssWT~nHI~qiW~~--~~~~iVyPPC~~e~l----------ks~~ 262 (465)
T KOG1387|consen 196 QKSGILVWGKLAYWRLFALLYQ-SAGSKADIVMTNSSWTNNHIKQIWQS--NTCSIVYPPCSTEDL----------KSKF 262 (465)
T ss_pred hhcchhhhHHHHHHHHHHHHHH-hccccceEEEecchhhHHHHHHHhhc--cceeEEcCCCCHHHH----------HHHh
Confidence 32211 12222222221111 33478999999999999999998864 688899998887533 2222
Q ss_pred CCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccC--CCCCeEEEEEeCCC---chhHHhh---------hCCcEEE
Q 011355 287 GIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDT--FRRSTVFLVAGDGP---WGARYRD---------LGTNVIV 352 (488)
Q Consensus 287 ~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~--~~~~~~l~ivG~g~---~~~~~~~---------l~~~V~~ 352 (488)
+-...+...++++|.+.|+|++. +++.++....+.+. .-++++|+++|+-. +.++++. +.++|.|
T Consensus 263 ~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F 341 (465)
T KOG1387|consen 263 GTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQF 341 (465)
T ss_pred cccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEE
Confidence 32233447899999999999999 66666554444311 11468999999732 2233332 3478999
Q ss_pred eCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeec---CCceeEeCCCHHHHHHHHH
Q 011355 353 LGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG---TDMGYLFSPQVESVKKALY 429 (488)
Q Consensus 353 ~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~---~~~g~l~~~d~~~la~~i~ 429 (488)
.-.+|.+++..+|..|.+.|+.- +.|.||+.++|+||+|+-.|+.+.||..-+++.+ ..+|++.+ +.++.++++.
T Consensus 342 ~~N~Py~~lv~lL~~a~iGvh~M-wNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~-t~~EYaE~iL 419 (465)
T KOG1387|consen 342 EKNVPYEKLVELLGKATIGVHTM-WNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP-TDEEYAEAIL 419 (465)
T ss_pred EecCCHHHHHHHhccceeehhhh-hhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC-ChHHHHHHHH
Confidence 99999999999999999999987 5799999999999999999999999876566654 35799887 8999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhcc
Q 011355 430 GIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISND 473 (488)
Q Consensus 430 ~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 473 (488)
+++..+.+++..|+++||..+.+ |+-.++-+.+...+..++..
T Consensus 420 kIv~~~~~~r~~~r~~AR~s~~R-FsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 420 KIVKLNYDERNMMRRNARKSLAR-FGELKFDKDWENPICKLLEE 462 (465)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHH-hhHHHHHHhHhHHHHHhhcc
Confidence 99998788899999999988855 99999999999998888774
No 82
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.92 E-value=1.6e-23 Score=217.57 Aligned_cols=282 Identities=20% Similarity=0.184 Sum_probs=199.8
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
.=|+|.+|++. ++..+....|. +...+|..++. .+++.-+ | ....+ ++.+-.||.|
T Consensus 147 ~~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs---~e~fr~l---p---~r~~i----------l~gll~aDli 207 (797)
T PLN03063 147 EGDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPS---SEIYKTL---P---SRSEL----------LRAVLTADLI 207 (797)
T ss_pred CCCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCC---HHHHhhC---C---CHHHH----------HHHHhcCCEE
Confidence 45899999864 45555554443 66667765332 1111110 1 00111 1334578888
Q ss_pred EEcChhhHHHHHHH----hcC-----------CCCcEEEecCCccCCCcCCCccc------chhhhhhhCCCCCCcEEEE
Q 011355 239 VATSDHCGDVLKRI----YMI-----------PEERVHVILNGVDEEVFKPDVAM------GKDFKKKFGIPENRSLVLG 297 (488)
Q Consensus 239 i~~S~~~~~~~~~~----~g~-----------~~~~i~vi~ngvd~~~~~~~~~~------~~~~r~~~~i~~~~~~~i~ 297 (488)
-+.+....+.+.+. .+. ...++.++|||||.+.|.+.... ...++++++ ++ .+|+
T Consensus 208 gF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~-~lIl 283 (797)
T PLN03063 208 GFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GR-KVIL 283 (797)
T ss_pred EeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CC-eEEE
Confidence 88887777766652 122 22578899999999877543221 123444443 44 6788
Q ss_pred EEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEe-----CCCchhHHh----hhC----C--------cEEE-eCc
Q 011355 298 MAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG-----DGPWGARYR----DLG----T--------NVIV-LGP 355 (488)
Q Consensus 298 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG-----~g~~~~~~~----~l~----~--------~V~~-~g~ 355 (488)
++||+++.||++.+++|++.+.+++++++.++.|+.++ +++..+.++ ++. . .|++ .+.
T Consensus 284 ~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~ 363 (797)
T PLN03063 284 GVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCS 363 (797)
T ss_pred EecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCC
Confidence 99999999999999999999998883322234555443 233333332 221 1 1333 357
Q ss_pred cCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCc----EEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHH
Q 011355 356 LDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKP----LMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYG 430 (488)
Q Consensus 356 v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~P----VI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ 430 (488)
++.+++..+|+.||++|.||.+ ||+|++++|||+||+| +|.|+++|.. +.+ +.+|++++| |+++++++|.+
T Consensus 364 v~~~el~aly~~ADvfvvtSlr-EGmnLv~lEamA~g~p~~gvlVlSe~~G~~-~~l--~~~allVnP~D~~~lA~AI~~ 439 (797)
T PLN03063 364 VDFNYLCALYAITDVMLVTSLR-DGMNLVSYEFVACQKAKKGVLVLSEFAGAG-QSL--GAGALLVNPWNITEVSSAIKE 439 (797)
T ss_pred CCHHHHHHHHHhCCEEEeCccc-cccCcchhhHheeecCCCCCEEeeCCcCch-hhh--cCCeEEECCCCHHHHHHHHHH
Confidence 8999999999999999999986 9999999999999999 9999999987 443 567999999 99999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhcc
Q 011355 431 IWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISND 473 (488)
Q Consensus 431 ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 473 (488)
+++.++++++++.++.++++.+ ++|...++.+.+-++++..+
T Consensus 440 aL~m~~~er~~r~~~~~~~v~~-~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 440 ALNMSDEERETRHRHNFQYVKT-HSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred HHhCCHHHHHHHHHHHHHhhhh-CCHHHHHHHHHHHHHHHhhh
Confidence 9996588888888999999966 79999999999988877653
No 83
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.92 E-value=2.3e-22 Score=191.61 Aligned_cols=282 Identities=14% Similarity=0.069 Sum_probs=191.7
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCC-cEEE
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPF-DVIH 169 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dvv~ 169 (488)
...|+...-.++.+.+.+.|+++.-+...+.. .........++....... ++ |+||
T Consensus 13 ~~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~-~~~Dvv~ 69 (333)
T PRK09814 13 GNSAALKAKNDVTKIAKQLGFEELGIYFYNIK----------------------RDSLSERSKRLDGILASL-KPGDIVI 69 (333)
T ss_pred ccchHHHHHHHHHHHHHHCCCeEeEEEecccc----------------------cchHHHHHHHHHHHHhcC-CCCCEEE
Confidence 44566677778899999999988665432100 001111122222222222 55 9999
Q ss_pred eCCcchHH---------h-hhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEE
Q 011355 170 TESVGLRH---------T-RARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHV 239 (488)
Q Consensus 170 ~~~~~~~~---------~-~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 239 (488)
++++.... . ...+.| ++..+|+.+...... . ... ...+..+++++|.++
T Consensus 70 ~~~P~~~~~~~~~~~~~~~k~~~~k-~i~~ihD~~~~~~~~---------~-----~~~------~~~~~~~~~~aD~iI 128 (333)
T PRK09814 70 FQFPTWNGFEFDRLFVDKLKKKQVK-IIILIHDIEPLRFDS---------N-----YYL------MKEEIDMLNLADVLI 128 (333)
T ss_pred EECCCCchHHHHHHHHHHHHHcCCE-EEEEECCcHHHhccc---------c-----chh------hHHHHHHHHhCCEEE
Confidence 98753321 1 111356 999999975432100 0 011 111235678999999
Q ss_pred EcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhH
Q 011355 240 ATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLL 319 (488)
Q Consensus 240 ~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~ 319 (488)
++|+.+++.+.+ .|++..++.++++..+........ .+..+ ..++|+|++...++ + .
T Consensus 129 ~~S~~~~~~l~~-~g~~~~~i~~~~~~~~~~~~~~~~-----------~~~~~-~~i~yaG~l~k~~~----l------~ 185 (333)
T PRK09814 129 VHSKKMKDRLVE-EGLTTDKIIVQGIFDYLNDIELVK-----------TPSFQ-KKINFAGNLEKSPF----L------K 185 (333)
T ss_pred ECCHHHHHHHHH-cCCCcCceEecccccccccccccc-----------cccCC-ceEEEecChhhchH----H------H
Confidence 999999999988 688777888877655432111100 01223 57899999984332 1 1
Q ss_pred hhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC----------CCCCChHHHHHH
Q 011355 320 AENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR----------AQGLDHTVLEAM 389 (488)
Q Consensus 320 ~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~----------~eg~~~~~lEAm 389 (488)
+.. ++++|+|+|+|+..+ ...++|+|.|+++.+++..+|+. |+.+.+... .-++|.++.|+|
T Consensus 186 ~~~----~~~~l~i~G~g~~~~---~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ym 257 (333)
T PRK09814 186 NWS----QGIKLTVFGPNPEDL---ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYL 257 (333)
T ss_pred hcC----CCCeEEEECCCcccc---ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHH
Confidence 123 689999999998654 45579999999999999999998 664443210 135799999999
Q ss_pred HcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 011355 390 LSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLN 452 (488)
Q Consensus 390 a~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~ 452 (488)
|||+|||+++.++.. +++.++++|++++ +.+++++++.++ + ++.+.+|++++++.+.+
T Consensus 258 A~G~PVI~~~~~~~~-~~V~~~~~G~~v~-~~~el~~~l~~~--~-~~~~~~m~~n~~~~~~~ 315 (333)
T PRK09814 258 AAGLPVIVWSKAAIA-DFIVENGLGFVVD-SLEELPEIIDNI--T-EEEYQEMVENVKKISKL 315 (333)
T ss_pred HCCCCEEECCCccHH-HHHHhCCceEEeC-CHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHH
Confidence 999999999999988 9999999999999 888999999985 2 57789999999998855
No 84
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.91 E-value=1.4e-22 Score=211.45 Aligned_cols=280 Identities=15% Similarity=0.130 Sum_probs=195.7
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
.-|+|.+|++. ++..+....|. +...+|-.++. .+++. .+.....-++.+-.+|.|
T Consensus 133 ~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~---~~~f~----------------~lp~~~~ll~~ll~~Dli 193 (726)
T PRK14501 133 PGDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPS---FEVFR----------------LLPWREEILEGLLGADLI 193 (726)
T ss_pred CCCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCC---hHHHh----------------hCCChHHHHHHHhcCCeE
Confidence 45999999864 45555544332 66677765432 11111 111111111344578888
Q ss_pred EEcChhhHHHHHHHh----cC-----------CCCcEEEecCCccCCCcCCCccc------chhhhhhhCCCCCCcEEEE
Q 011355 239 VATSDHCGDVLKRIY----MI-----------PEERVHVILNGVDEEVFKPDVAM------GKDFKKKFGIPENRSLVLG 297 (488)
Q Consensus 239 i~~S~~~~~~~~~~~----g~-----------~~~~i~vi~ngvd~~~~~~~~~~------~~~~r~~~~i~~~~~~~i~ 297 (488)
-..+....+.+.+.. +. ...++.++|+|||.+.|.+.... ...+|+.+ +++ .+|+
T Consensus 194 gf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~-~~il 269 (726)
T PRK14501 194 GFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGR-KIIL 269 (726)
T ss_pred EeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCC-EEEE
Confidence 888877666555421 21 12368899999999988654321 12244443 244 6888
Q ss_pred EEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCC-----CchhHHh----hh----C---------CcEEEeCc
Q 011355 298 MAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDG-----PWGARYR----DL----G---------TNVIVLGP 355 (488)
Q Consensus 298 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g-----~~~~~~~----~l----~---------~~V~~~g~ 355 (488)
++||+++.||+..+++|+..+.+++++++.+++|+++|.+ +..+.++ ++ . +.+.+.|.
T Consensus 270 ~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~ 349 (726)
T PRK14501 270 SIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRS 349 (726)
T ss_pred EecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCC
Confidence 9999999999999999999999888333335789888732 2222222 21 1 12457789
Q ss_pred cCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC-----cEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHH
Q 011355 356 LDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK-----PLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 356 v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~-----PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
++.+++..+|+.||++++||.+ ||||++++|||+||+ ||++...|+.. ++. .|++++| |+++++++|.
T Consensus 350 ~~~~~l~~ly~~aDv~v~~S~~-EG~~lv~~Eama~~~~~~g~~vls~~~G~~~-~l~----~~llv~P~d~~~la~ai~ 423 (726)
T PRK14501 350 LPFEELVALYRAADVALVTPLR-DGMNLVAKEYVASRTDGDGVLILSEMAGAAA-ELA----EALLVNPNDIEGIAAAIK 423 (726)
T ss_pred CCHHHHHHHHHhccEEEecccc-cccCcccceEEEEcCCCCceEEEecccchhH-HhC----cCeEECCCCHHHHHHHHH
Confidence 9999999999999999999985 999999999999954 66666666665 543 4899999 9999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhcc
Q 011355 430 GIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISND 473 (488)
Q Consensus 430 ~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 473 (488)
++++++.+++....+++++++. +|||+.+++++.+.|+++...
T Consensus 424 ~~l~~~~~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 424 RALEMPEEEQRERMQAMQERLR-RYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHcCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Confidence 9999755666666678999985 599999999999999987654
No 85
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.90 E-value=5.4e-22 Score=192.43 Aligned_cols=343 Identities=13% Similarity=0.095 Sum_probs=210.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCCCCC----CCC-ceEEEecCCCCccCcchhHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCLNCSFPT----YPI-SSLYFHLSKPTAAGYLDQSI 150 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~----~~~-~~i~~~~~~~~~~~~~~~~~ 150 (488)
|||++++..= .. -..+..++++|.+. +.++.++........... .++ +.+.+...............
T Consensus 1 ~~i~~~~gtr------~~-~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 73 (365)
T TIGR00236 1 LKVSIVLGTR------PE-AIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSN 73 (365)
T ss_pred CeEEEEEecC------HH-HHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHH
Confidence 7999998632 22 23567899999876 566666665432211000 122 22222222111111122233
Q ss_pred HHHHHHHHhcCCCCCcEEEeCCcc------hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHH
Q 011355 151 VWQQLQTQNSTGKPFDVIHTESVG------LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASK 224 (488)
Q Consensus 151 ~~~~~~~~~~~~~~~Dvv~~~~~~------~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (488)
....+....++. +||+||+|+.. .......++| ++...++..... .. ...+ ....+.+.
T Consensus 74 ~~~~l~~~l~~~-~pDiv~~~gd~~~~la~a~aa~~~~ip-v~h~~~g~~s~~---~~----~~~~-----~~~~r~~~- 138 (365)
T TIGR00236 74 MLEGLEELLLEE-KPDIVLVQGDTTTTLAGALAAFYLQIP-VGHVEAGLRTGD---RY----SPMP-----EEINRQLT- 138 (365)
T ss_pred HHHHHHHHHHHc-CCCEEEEeCCchHHHHHHHHHHHhCCC-EEEEeCCCCcCC---CC----CCCc-----cHHHHHHH-
Confidence 334444444444 89999999631 2222334678 665444421100 00 0001 11111111
Q ss_pred HHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCc-cCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee-
Q 011355 225 VVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGV-DEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL- 302 (488)
Q Consensus 225 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngv-d~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl- 302 (488)
.+.+|.++++|+..++.+.+ .|++++++++++|++ |.............++++++. +++++++..+|.
T Consensus 139 -------~~~ad~~~~~s~~~~~~l~~-~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~ 208 (365)
T TIGR00236 139 -------GHIADLHFAPTEQAKDNLLR-ENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE--DKRYILLTLHRRE 208 (365)
T ss_pred -------HHHHHhccCCCHHHHHHHHH-cCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC--CCCEEEEecCchh
Confidence 12367789999999999988 699999999999996 432222111123456667762 333555444454
Q ss_pred ccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc--hhHHhh---hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC
Q 011355 303 VKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW--GARYRD---LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 303 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~--~~~~~~---l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 377 (488)
...||++.+++|+.++.++. |+++++++|.+.. .+.+.+ ..++|+|+|.++..++..+|+.||+++.+|
T Consensus 209 ~~~k~~~~ll~a~~~l~~~~----~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-- 282 (365)
T TIGR00236 209 NVGEPLENIFKAIREIVEEF----EDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-- 282 (365)
T ss_pred hhhhHHHHHHHHHHHHHHHC----CCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC--
Confidence 34589999999999998777 7889888764322 222222 236899999999999999999999999877
Q ss_pred CCCCChHHHHHHHcCCcEEEe-CCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCH
Q 011355 378 AQGLDHTVLEAMLSGKPLMAT-RLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~-~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
|..++|||++|+|||++ +.++.. +.+..+ .+.+++.|++++++++.+++++ ++.+++|+++...+.. ..++
T Consensus 283 ----g~~~~EA~a~g~PvI~~~~~~~~~-e~~~~g-~~~lv~~d~~~i~~ai~~ll~~-~~~~~~~~~~~~~~g~-~~a~ 354 (365)
T TIGR00236 283 ----GGVQEEAPSLGKPVLVLRDTTERP-ETVEAG-TNKLVGTDKENITKAAKRLLTD-PDEYKKMSNASNPYGD-GEAS 354 (365)
T ss_pred ----hhHHHHHHHcCCCEEECCCCCCCh-HHHhcC-ceEEeCCCHHHHHHHHHHHHhC-hHHHHHhhhcCCCCcC-chHH
Confidence 33579999999999996 667766 666654 5666655999999999999998 8888888776533322 2345
Q ss_pred HHHHHHHHH
Q 011355 457 TKMAAAYER 465 (488)
Q Consensus 457 ~~~~~~~~~ 465 (488)
+++++.+.+
T Consensus 355 ~ri~~~l~~ 363 (365)
T TIGR00236 355 ERIVEELLN 363 (365)
T ss_pred HHHHHHHHh
Confidence 555554443
No 86
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.90 E-value=9.5e-22 Score=177.79 Aligned_cols=114 Identities=34% Similarity=0.514 Sum_probs=99.6
Q ss_pred EEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------hCCcEEEeCcc-CHHHHHHHHHhcCE
Q 011355 298 MAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------LGTNVIVLGPL-DQTRLAMFYNAIDI 370 (488)
Q Consensus 298 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------l~~~V~~~g~v-~~~~l~~~~~~adv 370 (488)
++|++.+.||++.+++++..+.++. ++++++++|.++.....+. ..++|.+.|++ +.+++..+++.||+
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~----~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di 184 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERG----PDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADV 184 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhC----CCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCE
Confidence 8999999999999999999999888 8999999999876654432 45799999998 45566666667999
Q ss_pred EEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEe
Q 011355 371 FVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLF 417 (488)
Q Consensus 371 ~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~ 417 (488)
++.||. .|++|++++|||++|+|+|+++.++.. |.+.++++|+++
T Consensus 185 ~l~~~~-~e~~~~~~~Eam~~g~pvi~s~~~~~~-e~i~~~~~g~~~ 229 (229)
T cd01635 185 FVLPSL-REGFGLVVLEAMACGLPVIATDVGGPP-EIVEDGLTGLLV 229 (229)
T ss_pred EEeccc-ccCcChHHHHHHhCCCCEEEcCCCCcc-eEEECCCceEEC
Confidence 999997 589999999999999999999999988 888899999875
No 87
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.90 E-value=2e-22 Score=196.87 Aligned_cols=338 Identities=14% Similarity=0.073 Sum_probs=207.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCC--CccCcchhHHH
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKP--TAAGYLDQSIV 151 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~--~~~~~~~~~~~ 151 (488)
.|||++... ..||.-.-.. ++++|.+.++++.++........... ...+...+..... .....+.....
T Consensus 1 ~~ki~i~~G------gt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 73 (380)
T PRK00025 1 PLRIAIVAG------EVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKI 73 (380)
T ss_pred CceEEEEec------CcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhhhccHHHHHHHHHHHHHH
Confidence 378988875 5677655555 99999998888888876542211110 1111111110000 00011122333
Q ss_pred HHHHHHHhcCCCCCcEEEeCCcc-hHH-----hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHH
Q 011355 152 WQQLQTQNSTGKPFDVIHTESVG-LRH-----TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKV 225 (488)
Q Consensus 152 ~~~~~~~~~~~~~~Dvv~~~~~~-~~~-----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (488)
...+.+..++. +||+||++++. ++. ....++| ++...+...+ . .. .....
T Consensus 74 ~~~~~~~l~~~-kPdivi~~~~~~~~~~~a~~a~~~~ip-~i~~~~~~~~--------~----~~-----~~~~~----- 129 (380)
T PRK00025 74 RRRLKRRLLAE-PPDVFIGIDAPDFNLRLEKKLRKAGIP-TIHYVSPSVW--------A----WR-----QGRAF----- 129 (380)
T ss_pred HHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHHCCCC-EEEEeCCchh--------h----cC-----chHHH-----
Confidence 34444444444 89999987531 211 2224567 6654443100 0 00 01111
Q ss_pred HHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee-cc
Q 011355 226 VEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL-VK 304 (488)
Q Consensus 226 ~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl-~~ 304 (488)
+..+.+|.+++.|+...+.+.+ +|++ +.+++|++....... ..+...+++++++++++.++++.|+- ..
T Consensus 130 ----~~~~~~d~i~~~~~~~~~~~~~-~g~~---~~~~G~p~~~~~~~~--~~~~~~~~~l~~~~~~~~il~~~gsr~~~ 199 (380)
T PRK00025 130 ----KIAKATDHVLALFPFEAAFYDK-LGVP---VTFVGHPLADAIPLL--PDRAAARARLGLDPDARVLALLPGSRGQE 199 (380)
T ss_pred ----HHHHHHhhheeCCccCHHHHHh-cCCC---eEEECcCHHHhcccc--cChHHHHHHcCCCCCCCEEEEECCCCHHH
Confidence 1234568889999999998877 5643 677777764332111 12356788899987774455566643 33
Q ss_pred c-cChHHHHHHHHHhHhhccCCCCCeEEEEEeC-CCchhHHhh----h-CCcEEEeCccCHHHHHHHHHhcCEEEeCCCC
Q 011355 305 D-KGHPLMFEALKQLLAENDTFRRSTVFLVAGD-GPWGARYRD----L-GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 305 ~-Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-g~~~~~~~~----l-~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 377 (488)
. ++++.+++++..+.++. ++++++++|. ++..+.+++ . +.++.+.+ +++..+|+.||++|.+|
T Consensus 200 ~~~~~~~l~~a~~~l~~~~----~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~aDl~v~~s-- 269 (380)
T PRK00025 200 IKRLLPPFLKAAQLLQQRY----PDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD----GQKREAMAAADAALAAS-- 269 (380)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc----ccHHHHHHhCCEEEECc--
Confidence 3 45788999999998877 8899999986 444444443 2 23455533 48999999999999976
Q ss_pred CCCCChHHHHHHHcCCcEEEe-----------------CCCCcccceeecCC--ceeEeCC-CHHHHHHHHHHHHhcCHH
Q 011355 378 AQGLDHTVLEAMLSGKPLMAT-----------------RLASIVGSVIVGTD--MGYLFSP-QVESVKKALYGIWADGRE 437 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~-----------------~~~~~~~e~v~~~~--~g~l~~~-d~~~la~~i~~ll~~~~~ 437 (488)
|.+.+|||++|+|+|++ +.++++ +++.++. .+++.+. |++++++++.++++| ++
T Consensus 270 ----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~-~~ 343 (380)
T PRK00025 270 ----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLP-NLLAGRELVPELLQEEATPEKLARALLPLLAD-GA 343 (380)
T ss_pred ----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehH-HHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC-HH
Confidence 56888999999999987 444555 5555543 4566666 899999999999999 99
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 438 VLEKKGLVARKRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 438 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
.+++|++++.+..... -...++++.+.+.+...
T Consensus 344 ~~~~~~~~~~~~~~~~--~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 344 RRQALLEGFTELHQQL--RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhh
Confidence 9999999886655442 22244555555555544
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.89 E-value=1.2e-21 Score=190.29 Aligned_cols=318 Identities=15% Similarity=0.103 Sum_probs=197.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCCCCC--------CCCceEEEecCCCCccCcchh
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCLNCSFPT--------YPISSLYFHLSKPTAAGYLDQ 148 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~ 148 (488)
||++++. ...+. ..+..+.++|++. |+++.++.+......... .....+...............
T Consensus 1 ~i~~~~g------tr~~~-~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 73 (363)
T cd03786 1 KILVVTG------TRPEY-IKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQT 73 (363)
T ss_pred CEEEEEe------cCHHH-HHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHH
Confidence 5788875 22332 3456899999987 899998777532221110 111222222222111111122
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeCCcc---h---HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 149 SIVWQQLQTQNSTGKPFDVIHTESVG---L---RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Dvv~~~~~~---~---~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
......+....... +||+||+|+.. + ......++| ++...|+..... ...+. .....
T Consensus 74 ~~~~~~l~~~l~~~-~pDvV~~~g~~~~~~~~~~aa~~~~iP-vv~~~~g~~s~~---------~~~~~----~~~r~-- 136 (363)
T cd03786 74 AGLLIGLEAVLLEE-KPDLVLVLGDTNETLAAALAAFKLGIP-VAHVEAGLRSFD---------RGMPD----EENRH-- 136 (363)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEeCCchHHHHHHHHHHHcCCC-EEEEecccccCC---------CCCCc----hHHHH--
Confidence 22233333334444 89999999632 1 122234678 776655532100 00010 01001
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCc-cCCCcCCCcccchhhhhhhCCCCCCcEEEEEEee
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGV-DEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR 301 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngv-d~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 301 (488)
...+.+|.+++.|+..++.+.+ +|++++++.+++|++ |...+..........+++++++++. +++++.|+
T Consensus 137 -------~~~~~ad~~~~~s~~~~~~l~~-~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~vlv~~~r 207 (363)
T cd03786 137 -------AIDKLSDLHFAPTEEARRNLLQ-EGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKK-YILVTLHR 207 (363)
T ss_pred -------HHHHHhhhccCCCHHHHHHHHH-cCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCC-EEEEEeCC
Confidence 1223568889999999999987 799999999999985 5433222222122335567776544 77888898
Q ss_pred ecc---ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh----h---CCcEEEeCccCHHHHHHHHHhcCEE
Q 011355 302 LVK---DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD----L---GTNVIVLGPLDQTRLAMFYNAIDIF 371 (488)
Q Consensus 302 l~~---~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~----l---~~~V~~~g~v~~~~l~~~~~~adv~ 371 (488)
... .||++.+++++..+.+ .++.+++.|.++..+.+++ + .++|.|.|..+.+++..+|+.||++
T Consensus 208 ~~~~~~~k~~~~l~~al~~l~~------~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~ 281 (363)
T cd03786 208 VENVDDGEQLEEILEALAELAE------EDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLV 281 (363)
T ss_pred ccccCChHHHHHHHHHHHHHHh------cCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEE
Confidence 764 7999999999998853 3467777777665554443 2 4789999988889999999999999
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEEeCCCC-cccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHH
Q 011355 372 VNPTLRAQGLDHTVLEAMLSGKPLMATRLAS-IVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKG 443 (488)
Q Consensus 372 v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~-~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~ 443 (488)
|.+|. | ...|||++|+|||+++..+ .+ +.+.+| .+..+..|+++++++|.+++++ +..+..|.
T Consensus 282 v~~Sg-----g-i~~Ea~~~g~PvI~~~~~~~~~-~~~~~g-~~~~~~~~~~~i~~~i~~ll~~-~~~~~~~~ 345 (363)
T cd03786 282 LTDSG-----G-IQEEASFLGVPVLNLRDRTERP-ETVESG-TNVLVGTDPEAILAAIEKLLSD-EFAYSLMS 345 (363)
T ss_pred EEcCc-----c-HHhhhhhcCCCEEeeCCCCccc-hhhhee-eEEecCCCHHHHHHHHHHHhcC-chhhhcCC
Confidence 99882 3 5799999999999987433 33 444333 3333333799999999999998 66665553
No 89
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.88 E-value=1.6e-20 Score=182.62 Aligned_cols=276 Identities=11% Similarity=0.069 Sum_probs=201.9
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
.-|+|.+|++. ++..+....|+ +-..+|..++. .+++.-+ +....+ ++.+-.+|.|
T Consensus 132 ~~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs---~eifr~L------P~r~~l----------l~glL~aDli 192 (487)
T TIGR02398 132 EGATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPS---ADVFNIL------PWREQI----------IGSLLCCDYI 192 (487)
T ss_pred CCCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCC---hHHHhhC------CchHHH----------HHHHhcCCeE
Confidence 45899999864 45555554442 56666654332 1111110 111111 1334568888
Q ss_pred EEcChhhHHHHHHHh----cCC--------------------------------CCcEEEecCCccCCCcCCCcc-----
Q 011355 239 VATSDHCGDVLKRIY----MIP--------------------------------EERVHVILNGVDEEVFKPDVA----- 277 (488)
Q Consensus 239 i~~S~~~~~~~~~~~----g~~--------------------------------~~~i~vi~ngvd~~~~~~~~~----- 277 (488)
=+.+...++.+.+.. |.. .-++.++|.|||.+.|.....
T Consensus 193 GFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~ 272 (487)
T TIGR02398 193 GFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIR 272 (487)
T ss_pred EeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHH
Confidence 888877776665522 211 113789999999988754321
Q ss_pred -cchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC-----c----hhHHhhh-
Q 011355 278 -MGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP-----W----GARYRDL- 346 (488)
Q Consensus 278 -~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~-----~----~~~~~~l- 346 (488)
....+|++++ ++ .+|+.++|++..||+...++|+.++.+++|+++.++.|+++|.+. . ..+++++
T Consensus 273 ~~~~~lr~~~~---~~-kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v 348 (487)
T TIGR02398 273 EMMERIRSELA---GV-KLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAV 348 (487)
T ss_pred HHHHHHHHHcC---Cc-eEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHH
Confidence 1345788877 44 678899999999999999999999999996655678999998653 1 1222221
Q ss_pred ------------CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC----cEEEeCCCCcccceeec
Q 011355 347 ------------GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK----PLMATRLASIVGSVIVG 410 (488)
Q Consensus 347 ------------~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~----PVI~~~~~~~~~e~v~~ 410 (488)
.+-+.+.+.++.+++..+|+.||+++.+|.+ ||++++..|+++|+. |+|.|.++|.. +.+
T Consensus 349 ~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lr-DGmNLVa~Eyva~~~~~~GvLILSefaGaa-~~l-- 424 (487)
T TIGR02398 349 GRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLR-DGLNLVAKEYVAAQGLLDGVLVLSEFAGAA-VEL-- 424 (487)
T ss_pred HHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccc-cccCcchhhHHhhhcCCCCCEEEeccccch-hhc--
Confidence 1346788999999999999999999999997 999999999999998 99999999987 443
Q ss_pred CCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 411 TDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 411 ~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
..+++++| |++++|++|.+.++.+.+++++.-+..++++.+ ++....++.+.+-++
T Consensus 425 -~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 425 -KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-YDVQRWADEFLAAVS 481 (487)
T ss_pred -CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhh
Confidence 45899999 999999999999999888888888888888866 799998888876543
No 90
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=1e-18 Score=168.75 Aligned_cols=221 Identities=29% Similarity=0.461 Sum_probs=179.7
Q ss_pred CccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCC-cEEEEEEeeeccccChHHHH
Q 011355 234 KYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENR-SLVLGMAGRLVKDKGHPLMF 312 (488)
Q Consensus 234 ~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~-~~~i~~~Grl~~~Kg~~~ll 312 (488)
..+.+++.++...+.+... .. ..++.+++++++...+... ..++..+. ...++++|++.+.||++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i 218 (381)
T COG0438 150 LADRVIAVSPALKELLEAL-GV-PNKIVVIPNGIDTEKFAPA---------RIGLLPEGGKFVVLYVGRLDPEKGLDLLI 218 (381)
T ss_pred cccEEEECCHHHHHHHHHh-CC-CCCceEecCCcCHHHcCcc---------ccCCCcccCceEEEEeeccChhcCHHHHH
Confidence 5788899988886666663 32 3378999999998876542 01112222 26888999999999999999
Q ss_pred HHHHHhHhhccCCCCCeEEEEEeCCCch-hH----Hhhh--CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHH
Q 011355 313 EALKQLLAENDTFRRSTVFLVAGDGPWG-AR----YRDL--GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTV 385 (488)
Q Consensus 313 ~a~~~l~~~~~~~~~~~~l~ivG~g~~~-~~----~~~l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~ 385 (488)
+++..+.... +++.++++|.++.. +. .++. .++|.+.|.++.+++..+++.||++++||.. |++|+++
T Consensus 219 ~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~-e~~~~~~ 293 (381)
T COG0438 219 EAAAKLKKRG----PDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLS-EGFGLVL 293 (381)
T ss_pred HHHHHhhhhc----CCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEecccc-ccchHHH
Confidence 9999998876 66999999998762 22 2222 3789999999988899999999999999975 9999999
Q ss_pred HHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHH
Q 011355 386 LEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYE 464 (488)
Q Consensus 386 lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 464 (488)
+|||++|+|||+++.++.. +++.++..|+++++ +.+++++++..++++ .+.++.+++++++.+.+.|+|+..++.+.
T Consensus 294 ~Ea~a~g~pvi~~~~~~~~-e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (381)
T COG0438 294 LEAMAAGTPVIASDVGGIP-EVVEDGETGLLVPPGDVEELADALEQLLED-PELREELGEAARERVEEEFSWERIAEQLL 371 (381)
T ss_pred HHHHhcCCcEEECCCCChH-HHhcCCCceEecCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999887 78877777887776 799999999999999 67788888867777767899999999999
Q ss_pred HHHHHhhc
Q 011355 465 RLFLCISN 472 (488)
Q Consensus 465 ~~~~~~~~ 472 (488)
+++.....
T Consensus 372 ~~~~~~~~ 379 (381)
T COG0438 372 ELYEELLA 379 (381)
T ss_pred HHHHHHHh
Confidence 99987755
No 91
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.6e-17 Score=147.27 Aligned_cols=362 Identities=16% Similarity=0.164 Sum_probs=232.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCc--cCc----chh
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTA--AGY----LDQ 148 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~----~~~ 148 (488)
++-+++++.- + ..| -+-++-.-|..|++.|++|+++....+.+.......+.++++...... ... +..
T Consensus 11 ~k~ra~vvVL----G-DvG-RSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~ 84 (444)
T KOG2941|consen 11 KKKRAIVVVL----G-DVG-RSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLP 84 (444)
T ss_pred ccceEEEEEe----c-ccC-CChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCcccCCCchhhhhH
Confidence 3446655553 1 233 344455677889999999999998876555444456666666432211 111 111
Q ss_pred HHHHHHHHHH---hcCCCCCcEEEeCCc-chHHh-------hhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHH
Q 011355 149 SIVWQQLQTQ---NSTGKPFDVIHTESV-GLRHT-------RARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYA 217 (488)
Q Consensus 149 ~~~~~~~~~~---~~~~~~~Dvv~~~~~-~~~~~-------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (488)
.+.+.++..+ ......+|++.+.++ +++.. ...+.+ +++.+|++.|. ....+......++ -.
T Consensus 85 lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~K-fiIDWHNy~Ys-----l~l~~~~g~~h~l-V~ 157 (444)
T KOG2941|consen 85 LKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAK-FIIDWHNYGYS-----LQLKLKLGFQHPL-VR 157 (444)
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcce-EEEEehhhHHH-----HHHHhhcCCCCch-HH
Confidence 1111111111 111228999999863 22221 112334 99999997653 1111112222222 13
Q ss_pred HHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCcc-----CCC----cCC----------C-cc
Q 011355 218 LAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVD-----EEV----FKP----------D-VA 277 (488)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd-----~~~----~~~----------~-~~ 277 (488)
+.+.+.+ .+-+.+|.-+|+++.+++.+.+.+|+. +..|++.--. .+. |.+ . ++
T Consensus 158 l~~~~E~-----~fgk~a~~nLcVT~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q 230 (444)
T KOG2941|consen 158 LVRWLEK-----YFGKLADYNLCVTKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQ 230 (444)
T ss_pred HHHHHHH-----HhhcccccchhhHHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccc
Confidence 3333333 345789999999999999999999974 4555554211 110 111 0 00
Q ss_pred ----cchhhhhhhC-----CCCCCcEEEEEEeeeccccChHHHHHHHHHhH-----hhccCCCCCeEEEEEeCCCchhHH
Q 011355 278 ----MGKDFKKKFG-----IPENRSLVLGMAGRLVKDKGHPLMFEALKQLL-----AENDTFRRSTVFLVAGDGPWGARY 343 (488)
Q Consensus 278 ----~~~~~r~~~~-----i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~-----~~~~~~~~~~~l~ivG~g~~~~~~ 343 (488)
++..+-++.. ...+.+.+++...+..+..++..+++|+.... +.+. .|++.++|.|+||.++.+
T Consensus 231 ~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~--lP~llciITGKGPlkE~Y 308 (444)
T KOG2941|consen 231 DKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHN--LPSLLCIITGKGPLKEKY 308 (444)
T ss_pred cchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCC--CCcEEEEEcCCCchhHHH
Confidence 1122233322 11234467777778899999999999998442 2221 288999999999998877
Q ss_pred hhh----C-CcEEE-eCccCHHHHHHHHHhcCEEEe--CCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCcee
Q 011355 344 RDL----G-TNVIV-LGPLDQTRLAMFYNAIDIFVN--PTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGY 415 (488)
Q Consensus 344 ~~l----~-~~V~~-~g~v~~~~l~~~~~~adv~v~--ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~ 415 (488)
.+. . .+|.+ +.++..|+.+.+++.||+.|. .|..+-..|+++++...||+||++-++.-+. |+|.+++||+
T Consensus 309 ~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~-ELVkh~eNGl 387 (444)
T KOG2941|consen 309 SQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLD-ELVKHGENGL 387 (444)
T ss_pred HHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHH-HHHhcCCCce
Confidence 652 1 34544 678899999999999999654 5544456799999999999999999999997 9999999999
Q ss_pred EeCCCHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 416 LFSPQVESVKKALYGIWA----DGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 416 l~~~d~~~la~~i~~ll~----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
+|+ |.+++++.+..+.+ + .+.+.++.+++++..+ ..|+..-++.
T Consensus 388 vF~-Ds~eLa~ql~~lf~~fp~~-a~~l~~lkkn~~e~~e--~RW~~~W~~~ 435 (444)
T KOG2941|consen 388 VFE-DSEELAEQLQMLFKNFPDN-ADELNQLKKNLREEQE--LRWDESWERT 435 (444)
T ss_pred Eec-cHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHh--hhHHHHHHHh
Confidence 999 99999999999999 5 8889999999998853 3566554443
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.81 E-value=1.9e-17 Score=171.25 Aligned_cols=281 Identities=20% Similarity=0.172 Sum_probs=196.6
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
.=|+|.+|++. ++..+....|. +-..+|..++. .+++ +.+.....-++.+-.||.|
T Consensus 231 ~gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs---~Eif----------------r~LP~r~elL~glL~aDlI 291 (934)
T PLN03064 231 EGDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPS---SEIH----------------RTLPSRSELLRSVLAADLV 291 (934)
T ss_pred CCCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCC---hHHH----------------hhCCcHHHHHHHHhcCCeE
Confidence 45899999864 45555555443 56666764332 1111 1111111112344578999
Q ss_pred EEcChhhHHHHHHH----hcCC-----------CCcEEEecCCccCCCcCCCcc------cchhhhhhhCCCCCCcEEEE
Q 011355 239 VATSDHCGDVLKRI----YMIP-----------EERVHVILNGVDEEVFKPDVA------MGKDFKKKFGIPENRSLVLG 297 (488)
Q Consensus 239 i~~S~~~~~~~~~~----~g~~-----------~~~i~vi~ngvd~~~~~~~~~------~~~~~r~~~~i~~~~~~~i~ 297 (488)
=+.+....+.|.+. +|.. .-++.+.|-|||.+.|..... ....++++++ ++ .+|+
T Consensus 292 GFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~-kiIl 367 (934)
T PLN03064 292 GFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GR-KVML 367 (934)
T ss_pred EeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---Cc-eEEE
Confidence 99988877777652 2221 113557788999987754322 1246777765 44 5788
Q ss_pred EEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEe-----CCCchhHHh----hh--------C----CcEEEe-Cc
Q 011355 298 MAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG-----DGPWGARYR----DL--------G----TNVIVL-GP 355 (488)
Q Consensus 298 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG-----~g~~~~~~~----~l--------~----~~V~~~-g~ 355 (488)
.++|++..||+...++||..+.+++++++.++.|+-+. +++..+.++ ++ + .-|+++ ..
T Consensus 368 gVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~ 447 (934)
T PLN03064 368 GVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRS 447 (934)
T ss_pred EeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccC
Confidence 99999999999999999999999985444445555332 333333322 11 1 114443 45
Q ss_pred cCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC----cEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHH
Q 011355 356 LDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK----PLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYG 430 (488)
Q Consensus 356 v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~----PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ 430 (488)
++.+++..+|+.||+++.||.+ ||++++..|||+|+. ++|.|.+.|.. +.+ +..+++++| |+++++++|.+
T Consensus 448 l~~eeL~AlY~~ADV~lvTslr-DGmNLva~Eyva~~~~~~GvLILSEfaGaa-~~L--~~~AllVNP~D~~~vA~AI~~ 523 (934)
T PLN03064 448 LDFHALCALYAVTDVALVTSLR-DGMNLVSYEFVACQDSKKGVLILSEFAGAA-QSL--GAGAILVNPWNITEVAASIAQ 523 (934)
T ss_pred CCHHHHHHHHHhCCEEEeCccc-cccCchHHHHHHhhcCCCCCeEEeCCCchH-HHh--CCceEEECCCCHHHHHHHHHH
Confidence 8999999999999999999996 999999999999954 44459998887 444 457899999 99999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 431 IWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 431 ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
.++.++++++.+.++.++++.+ +|+...++.+.+-+.+...
T Consensus 524 AL~M~~~Er~~r~~~~~~~V~~-~d~~~Wa~~fl~~L~~~~~ 564 (934)
T PLN03064 524 ALNMPEEEREKRHRHNFMHVTT-HTAQEWAETFVSELNDTVV 564 (934)
T ss_pred HHhCCHHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHHh
Confidence 9996589999999999999966 7999999998877766543
No 93
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.80 E-value=3.9e-19 Score=146.60 Aligned_cols=131 Identities=27% Similarity=0.437 Sum_probs=99.6
Q ss_pred EEEEEEeeeccccChHHHHH-HHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh-CCcEEEeCccCHHHHHHHHHhcCEE
Q 011355 294 LVLGMAGRLVKDKGHPLMFE-ALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL-GTNVIVLGPLDQTRLAMFYNAIDIF 371 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~-a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l-~~~V~~~g~v~~~~l~~~~~~adv~ 371 (488)
+.++++|++.+.|+++.+++ ++.++.++. |+++|+|+|.++. +++++ .++|+++|++ +++.++++.||++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~----p~~~l~i~G~~~~--~l~~~~~~~v~~~g~~--~e~~~~l~~~dv~ 74 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKH----PDIELIIIGNGPD--ELKRLRRPNVRFHGFV--EELPEILAAADVG 74 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHS----TTEEEEEECESS---HHCCHHHCTEEEE-S---HHHHHHHHC-SEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHC----cCEEEEEEeCCHH--HHHHhcCCCEEEcCCH--HHHHHHHHhCCEE
Confidence 67899999999999999999 999999999 9999999999776 35555 6799999998 5899999999999
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhc
Q 011355 372 VNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWAD 434 (488)
Q Consensus 372 v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~ 434 (488)
+.|+...++++.+++|||++|+|||+++. +.. +++...+.|.++..|+++++++|.++++|
T Consensus 75 l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 75 LIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAE-GIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp EE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCH-CHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred EEEeeCCCcCcHHHHHHHHhCCCEEECCc-chh-hheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 99986567999999999999999999998 444 55555667777744999999999999875
No 94
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.75 E-value=1.1e-16 Score=158.84 Aligned_cols=210 Identities=11% Similarity=0.077 Sum_probs=167.0
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCC--CCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEe--eeccc
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIP--EERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAG--RLVKD 305 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~--~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G--rl~~~ 305 (488)
..+.++|.+|+.|+...+.+.++++-. ..++..||.+.- ... . |.....+-.+++++ |+ ++
T Consensus 268 ~~~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~-~------------~~s~r~~~~~I~v~idrL-~e 332 (519)
T TIGR03713 268 ESLSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLR-L------------GQSQQLYETEIGFWIDGL-SD 332 (519)
T ss_pred hChhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEe-c------------ChhhcccceEEEEEcCCC-Ch
Confidence 345688999999988788787766411 134566775432 111 1 11112223566788 99 99
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch---hHHhh----h--C-----------------------------
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG---ARYRD----L--G----------------------------- 347 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~---~~~~~----l--~----------------------------- 347 (488)
|.++.+|+++.++.++. |+++|.+.|.+.+. +.+++ + .
T Consensus 333 k~~~~~I~av~~~~~~~----p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (519)
T TIGR03713 333 EELQQILQQLLQYILKN----PDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEK 408 (519)
T ss_pred HHHHHHHHHHHHHHhhC----CCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccc
Confidence 99999999999999999 99999999987543 22221 1 2
Q ss_pred CcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHH
Q 011355 348 TNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKA 427 (488)
Q Consensus 348 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~ 427 (488)
..|.|.|..+.+++...|..+.++|.+|. .|||+ +.+||++.|+|+| +.|. . ++|.++.+|+++. |..+|+++
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~-~eg~~-~~ieAiS~GiPqI--nyg~-~-~~V~d~~NG~li~-d~~~l~~a 481 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSK-EPDLY-TQISGISAGIPQI--NKVE-T-DYVEHNKNGYIID-DISELLKA 481 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCC-CCChH-HHHHHHHcCCCee--ecCC-c-eeeEcCCCcEEeC-CHHHHHHH
Confidence 58999999888899999999999999997 69999 9999999999999 4444 5 8999999999997 99999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 011355 428 LYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 428 i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
+..++.+ ++.+.++...+++.+.+ ||-+++.+++.+++
T Consensus 482 l~~~L~~-~~~wn~~~~~sy~~~~~-yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 482 LDYYLDN-LKNWNYSLAYSIKLIDD-YSSENIIERLNELI 519 (519)
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhC
Confidence 9999999 99999999999999955 99999999987753
No 95
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.72 E-value=2.7e-15 Score=145.40 Aligned_cols=318 Identities=11% Similarity=0.063 Sum_probs=184.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCC--CC--CCCceEEEecCCCCccCcchhHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSF--PT--YPISSLYFHLSKPTAAGYLDQSIVWQ 153 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 153 (488)
||++.+. ..||.-.-. .++++|.++|+++.++......-.. .. .....+.+................+.
T Consensus 7 ki~i~aG------gtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~ 79 (385)
T TIGR00215 7 TIALVAG------EASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRK 79 (385)
T ss_pred eEEEEeC------CccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHH
Confidence 6777664 556655555 9999999999999999876422111 00 11111111100000111222333344
Q ss_pred HHHHHhcCCCCCcEEEeCCc-chH-----HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHH
Q 011355 154 QLQTQNSTGKPFDVIHTESV-GLR-----HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVE 227 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~~~-~~~-----~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (488)
+..+..++. +||+|+..+. +++ .....++| +++ |.. +. .+. ++. ...+.
T Consensus 80 ~~~~~l~~~-kPd~vi~~g~~~~~~~~a~aa~~~gip-~v~--~i~-P~-----~wa----w~~-----~~~r~------ 134 (385)
T TIGR00215 80 EVVQLAKQA-KPDLLVGIDAPDFNLTKELKKKDPGIK-IIY--YIS-PQ-----VWA----WRK-----WRAKK------ 134 (385)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCccHHHHHHHhhCCCC-EEE--EeC-Cc-----Hhh----cCc-----chHHH------
Confidence 444445455 8999999863 222 22234566 553 321 10 000 000 00111
Q ss_pred HhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEe-eecc-c
Q 011355 228 EVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAG-RLVK-D 305 (488)
Q Consensus 228 ~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G-rl~~-~ 305 (488)
+.+.+|++++.++...+.+.+ +|+ ++.+++|++....... ...+...|++++++++++.+++..| |..+ .
T Consensus 135 ---l~~~~d~v~~~~~~e~~~~~~-~g~---~~~~vGnPv~~~~~~~-~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~ 206 (385)
T TIGR00215 135 ---IEKATDFLLAILPFEKAFYQK-KNV---PCRFVGHPLLDAIPLY-KPDRKSAREKLGIDHNGETLALLPGSRGSEVE 206 (385)
T ss_pred ---HHHHHhHhhccCCCcHHHHHh-cCC---CEEEECCchhhhcccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHH
Confidence 124567779999999888876 443 5667888874332211 1123567888999887744444455 5555 6
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEe-CCCchhHHhh----h--CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAG-DGPWGARYRD----L--GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG-~g~~~~~~~~----l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
|+++.+++++..+.++. |++++++.+ .+...+.+++ + ..+|.+.+. ++..+|++||++|.+|
T Consensus 207 k~~~~ll~a~~~l~~~~----p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~aADl~V~~S--- 275 (385)
T TIGR00215 207 KLFPLFLKAAQLLEQQE----PDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG----DARKAMFAADAALLAS--- 275 (385)
T ss_pred HhHHHHHHHHHHHHHhC----CCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc----hHHHHHHhCCEEeecC---
Confidence 89999999999998888 889887654 4333333332 2 245655543 5668999999999988
Q ss_pred CCCChHHHHHHHcCCcEEEeC-CCCccc---------------ceeecCCce-eEeC-C-CHHHHHHHHHHHHhcCH---
Q 011355 379 QGLDHTVLEAMLSGKPLMATR-LASIVG---------------SVIVGTDMG-YLFS-P-QVESVKKALYGIWADGR--- 436 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~-~~~~~~---------------e~v~~~~~g-~l~~-~-d~~~la~~i~~ll~~~~--- 436 (488)
|.+.+|+|++|+|+|... ....+. .++.+.+.. -+.. . +++.+++.+.++++| +
T Consensus 276 ---Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~-~~~~ 351 (385)
T TIGR00215 276 ---GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLEN-GLKA 351 (385)
T ss_pred ---CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcC-Cccc
Confidence 456679999999998872 111110 122222211 1222 2 789999999999998 7
Q ss_pred -HHHHHHHHHHHHHH
Q 011355 437 -EVLEKKGLVARKRG 450 (488)
Q Consensus 437 -~~~~~~~~~a~~~~ 450 (488)
+.++++.+...+..
T Consensus 352 ~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 352 YKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 77777665554443
No 96
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=2.1e-13 Score=128.64 Aligned_cols=323 Identities=20% Similarity=0.129 Sum_probs=185.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCC--CCCceEEEecCCCCccCcc-------
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHE-LHIFTASCLNCSFPT--YPISSLYFHLSKPTAAGYL------- 146 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~------- 146 (488)
|+|++... ..||.-.-+..++++|.++|++ |.++.....-..... .......+..........+
T Consensus 1 ~~ivl~~g------GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~ 74 (357)
T COG0707 1 KKIVLTAG------GTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPF 74 (357)
T ss_pred CeEEEEeC------CCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHH
Confidence 45566554 6788888899999999999995 666644332222221 1222222222222111222
Q ss_pred hhHHHHHHHHHHhcCCCCCcEEEeCC--cchHHhh---hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHH
Q 011355 147 DQSIVWQQLQTQNSTGKPFDVIHTES--VGLRHTR---ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAER 221 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~Dvv~~~~--~~~~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
.......+.+...++. +||+|+..+ ...+..+ ..++| ++....+.. + ....+.
T Consensus 75 ~~~~~~~~a~~il~~~-kPd~vig~Ggyvs~P~~~Aa~~~~iP-v~ihEqn~~---------------~-----G~ank~ 132 (357)
T COG0707 75 KLLKGVLQARKILKKL-KPDVVIGTGGYVSGPVGIAAKLLGIP-VIIHEQNAV---------------P-----GLANKI 132 (357)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEecCCccccHHHHHHHhCCCC-EEEEecCCC---------------c-----chhHHH
Confidence 2222333334444444 999999964 2233332 23455 443333321 1 111122
Q ss_pred HHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEee
Q 011355 222 ASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR 301 (488)
Q Consensus 222 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 301 (488)
..+. ++. ++.+... .. -+.+++++.++.|++..+... .+. ...+.... .+++.++++-|+
T Consensus 133 ~~~~---------a~~-V~~~f~~----~~-~~~~~~~~~~tG~Pvr~~~~~-~~~--~~~~~~~~--~~~~~ilV~GGS 192 (357)
T COG0707 133 LSKF---------AKK-VASAFPK----LE-AGVKPENVVVTGIPVRPEFEE-LPA--AEVRKDGR--LDKKTILVTGGS 192 (357)
T ss_pred hHHh---------hce-eeecccc----cc-ccCCCCceEEecCcccHHhhc-cch--hhhhhhcc--CCCcEEEEECCc
Confidence 2222 222 3333222 11 345667899999999887665 222 12222211 144345555555
Q ss_pred eccccChHHHHHHHHHhHhhccCCCCCeEE-EEEeCCCchhHHh---hhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC
Q 011355 302 LVKDKGHPLMFEALKQLLAENDTFRRSTVF-LVAGDGPWGARYR---DLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 302 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l-~ivG~g~~~~~~~---~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 377 (488)
....+--+.+.++...+.+ ++++ +.+|.+...+... ++.. +.+.++ .+++.++|++||++|. +
T Consensus 193 ~Ga~~ln~~v~~~~~~l~~-------~~~v~~~~G~~~~~~~~~~~~~~~~-~~v~~f--~~dm~~~~~~ADLvIs---R 259 (357)
T COG0707 193 QGAKALNDLVPEALAKLAN-------RIQVIHQTGKNDLEELKSAYNELGV-VRVLPF--IDDMAALLAAADLVIS---R 259 (357)
T ss_pred chhHHHHHHHHHHHHHhhh-------CeEEEEEcCcchHHHHHHHHhhcCc-EEEeeH--HhhHHHHHHhccEEEe---C
Confidence 5444433333344444432 3444 5566654222222 2333 899999 4599999999999997 4
Q ss_pred CCCCChHHHHHHHcCCcEEEeCCCCccc-------ceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011355 378 AQGLDHTVLEAMLSGKPLMATRLASIVG-------SVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKKGLVAR 447 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~~~~~~~~-------e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~a~ 447 (488)
.| ++++.|..++|+|+|.-..+...+ ..+++.+.|.+++. +.+++.+.|.+++++ ++.++.|.++++
T Consensus 260 -aG-a~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~-~~~l~~m~~~a~ 336 (357)
T COG0707 260 -AG-ALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSN-PEKLKAMAENAK 336 (357)
T ss_pred -Cc-ccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 34 679999999999999987766521 24566677888886 488999999999999 999999999998
Q ss_pred HHHhhhCCHHHHHHHHH
Q 011355 448 KRGLNLFTATKMAAAYE 464 (488)
Q Consensus 448 ~~~~~~fs~~~~~~~~~ 464 (488)
+....+ ..+.+++..+
T Consensus 337 ~~~~p~-aa~~i~~~~~ 352 (357)
T COG0707 337 KLGKPD-AAERIADLLL 352 (357)
T ss_pred hcCCCC-HHHHHHHHHH
Confidence 877553 4444444443
No 97
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.64 E-value=5.5e-15 Score=127.80 Aligned_cols=173 Identities=26% Similarity=0.412 Sum_probs=92.5
Q ss_pred EEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHHH
Q 011355 79 IALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQTQ 158 (488)
Q Consensus 79 Il~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (488)
|+++...+ ...||+++++.+++++|+++||+|++++....+..... .........................+...
T Consensus 1 ili~~~~~---~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF13439_consen 1 ILITNIFL---PNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE--LVKIFVKIPYPIRKRFLRSFFFMRRLRRL 75 (177)
T ss_dssp -EEECC-T---TSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST--EEEE---TT-SSTSS--HHHHHHHHHHHH
T ss_pred CEEEEecC---CCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh--ccceeeeeecccccccchhHHHHHHHHHH
Confidence 34555433 26899999999999999999999999988865554433 00111111111111222222233333334
Q ss_pred hcCCCCCcEEEeCCcch---HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCc
Q 011355 159 NSTGKPFDVIHTESVGL---RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKY 235 (488)
Q Consensus 159 ~~~~~~~Dvv~~~~~~~---~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (488)
.++. +||+||+|.... ........| .+.+.|+.... ........... ..+.....+ ..++++
T Consensus 76 i~~~-~~DiVh~~~~~~~~~~~~~~~~~~-~v~~~H~~~~~-------~~~~~~~~~~~-~~~~~~~~~-----~~~~~~ 140 (177)
T PF13439_consen 76 IKKE-KPDIVHIHGPPAFWIALLACRKVP-IVYTIHGPYFE-------RRFLKSKLSPY-SYLNFRIER-----KLYKKA 140 (177)
T ss_dssp HHHH-T-SEEECCTTHCCCHHHHHHHCSC-EEEEE-HHH---------HHTTTTSCCCH-HHHHHCTTH-----HHHCCS
T ss_pred HHHc-CCCeEEecccchhHHHHHhccCCC-EEEEeCCCccc-------ccccccccchh-hhhhhhhhh-----hHHhcC
Confidence 4333 899999997432 111112667 99999986432 00111111111 122222211 336899
Q ss_pred cEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCc
Q 011355 236 AHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVF 272 (488)
Q Consensus 236 d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~ 272 (488)
|.++++|+.+++.+.+ +|++++++.|||||+|.+.|
T Consensus 141 ~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 141 DRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp SEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred CEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 9999999999999999 99999999999999999876
No 98
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.63 E-value=3.8e-13 Score=128.62 Aligned_cols=303 Identities=16% Similarity=0.111 Sum_probs=170.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCCCccCcc-------h
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKPTAAGYL-------D 147 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~-------~ 147 (488)
||.++++. ...||.-.-+..++++|.++||+|.+++....-..... .+.+...+..........+ .
T Consensus 1 ~~~i~~~~-----GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (352)
T PRK12446 1 MKKIVFTG-----GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFL 75 (352)
T ss_pred CCeEEEEc-----CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHH
Confidence 45455553 26788888899999999999999999987654332221 2333333332211100011 1
Q ss_pred hHHHHHHHHHHhcCCCCCcEEEeCCcc-----hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 148 QSIVWQQLQTQNSTGKPFDVIHTESVG-----LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~Dvv~~~~~~-----~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
......+..++.++. +||+|+.+... .......++| ..+|.-.. .+ ...-+.+
T Consensus 76 ~~~~~~~~~~i~~~~-kPdvvi~~Ggy~s~p~~~aa~~~~~p---~~i~e~n~-------------~~-----g~~nr~~ 133 (352)
T PRK12446 76 VMKGVMDAYVRIRKL-KPDVIFSKGGFVSVPVVIGGWLNRVP---VLLHESDM-------------TP-----GLANKIA 133 (352)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEecCchhhHHHHHHHHHcCCC---EEEECCCC-------------Cc-----cHHHHHH
Confidence 122222333334444 89999998632 2222333455 33443210 00 0111111
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
.+.++.+.+.=+... + +++.+++.++++++..+..... +...++.++++++++.++++-|+.
T Consensus 134 ---------~~~a~~v~~~f~~~~----~--~~~~~k~~~tG~Pvr~~~~~~~---~~~~~~~~~l~~~~~~iLv~GGS~ 195 (352)
T PRK12446 134 ---------LRFASKIFVTFEEAA----K--HLPKEKVIYTGSPVREEVLKGN---REKGLAFLGFSRKKPVITIMGGSL 195 (352)
T ss_pred ---------HHhhCEEEEEccchh----h--hCCCCCeEEECCcCCccccccc---chHHHHhcCCCCCCcEEEEECCcc
Confidence 123444443222211 2 2355788999999977654221 345667788887775555555655
Q ss_pred ccccCh-HHHHHHHHHhHhhccCCCCCeEE-EEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCC
Q 011355 303 VKDKGH-PLMFEALKQLLAENDTFRRSTVF-LVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQG 380 (488)
Q Consensus 303 ~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~l-~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg 380 (488)
.. +.+ +.+.+++..+. .++++ +++|.....+..... .++...+++ .+++.++|+.||++|. + .|
T Consensus 196 Ga-~~in~~~~~~l~~l~-------~~~~vv~~~G~~~~~~~~~~~-~~~~~~~f~-~~~m~~~~~~adlvIs---r-~G 261 (352)
T PRK12446 196 GA-KKINETVREALPELL-------LKYQIVHLCGKGNLDDSLQNK-EGYRQFEYV-HGELPDILAITDFVIS---R-AG 261 (352)
T ss_pred ch-HHHHHHHHHHHHhhc-------cCcEEEEEeCCchHHHHHhhc-CCcEEecch-hhhHHHHHHhCCEEEE---C-CC
Confidence 43 333 23334444442 23444 456755433323222 345556774 2589999999999997 3 23
Q ss_pred CChHHHHHHHcCCcEEEeCCCCc----cc----ceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHH
Q 011355 381 LDHTVLEAMLSGKPLMATRLASI----VG----SVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLE 440 (488)
Q Consensus 381 ~~~~~lEAma~G~PVI~~~~~~~----~~----e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~ 440 (488)
+.++.|++++|+|.|....... .+ +.+.+.+.+..+.. +++.+.+++.++++| ++.++
T Consensus 262 -~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~-~~~~~ 330 (352)
T PRK12446 262 -SNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHN-NEKYK 330 (352)
T ss_pred -hhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcC-HHHHH
Confidence 6799999999999999865421 11 23445566666643 689999999999988 65543
No 99
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.63 E-value=1e-13 Score=139.46 Aligned_cols=233 Identities=16% Similarity=0.194 Sum_probs=168.4
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcC-----C--CCcEEEecCCccCCCcCCCcc-------------------------
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMI-----P--EERVHVILNGVDEEVFKPDVA------------------------- 277 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~-----~--~~~i~vi~ngvd~~~~~~~~~------------------------- 277 (488)
-.+..+|.+.++|+...+..+..++. + ..++.-|-||||.....+...
T Consensus 258 lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~ 337 (601)
T TIGR02094 258 LALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAI 337 (601)
T ss_pred HHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhc
Confidence 34578899999999888744443321 1 234788889999875543210
Q ss_pred ----------c----chhhhh----h-----------------hC--CCCCCcEEEEEEeeeccccChHHHHHHHHHhHh
Q 011355 278 ----------M----GKDFKK----K-----------------FG--IPENRSLVLGMAGRLVKDKGHPLMFEALKQLLA 320 (488)
Q Consensus 278 ----------~----~~~~r~----~-----------------~~--i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~ 320 (488)
. +..+.+ + +| +.++. +.+++++|+..+||+++++.++..+.+
T Consensus 338 ~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~-~~ig~v~Rl~~yKr~dLil~~i~~l~~ 416 (601)
T TIGR02094 338 DDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDV-LTIGFARRFATYKRADLIFRDLERLAR 416 (601)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCC-cEEEEEEcchhhhhHHHHHHHHHHHHH
Confidence 0 111211 1 11 23344 789999999999999999999888864
Q ss_pred --hccCCCCCeEEEEEeCCCch--------hHHhh------hCCcEEEeCccCHHHHHHHHHhcCEEEe-CCCCCCCCCh
Q 011355 321 --ENDTFRRSTVFLVAGDGPWG--------ARYRD------LGTNVIVLGPLDQTRLAMFYNAIDIFVN-PTLRAQGLDH 383 (488)
Q Consensus 321 --~~~~~~~~~~l~ivG~g~~~--------~~~~~------l~~~V~~~g~v~~~~l~~~~~~adv~v~-ps~~~eg~~~ 383 (488)
..++ .++++++.|++... +.+.+ ..++|.|+...+.+--..+++.||++++ ||.-.|.+|+
T Consensus 417 i~~~~~--~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGt 494 (601)
T TIGR02094 417 ILNNPE--RPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGT 494 (601)
T ss_pred HhhCCC--CCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchH
Confidence 2111 36899999987522 22222 2358888776666666788999999999 9972499999
Q ss_pred HHHHHHHcCCcEEEeCCCCcccceeecCCceeEeC------------C-CHHHHHHHHHHHHh----cC-----HHHHHH
Q 011355 384 TVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFS------------P-QVESVKKALYGIWA----DG-----REVLEK 441 (488)
Q Consensus 384 ~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~------------~-d~~~la~~i~~ll~----~~-----~~~~~~ 441 (488)
+-+=||..|.+.+++--|... |.. ++.+|+.+. . |.++|-++|++.+. +. |..+.+
T Consensus 495 sqMka~~nGgL~~sv~DG~~~-E~~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~ 572 (601)
T TIGR02094 495 SGMKAAMNGVLNLSILDGWWG-EGY-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVE 572 (601)
T ss_pred HHHHHHHcCCceeecccCccc-ccC-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHH
Confidence 999999999999999877766 444 678999998 4 89999999976551 21 345888
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHH
Q 011355 442 KGLVARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 442 ~~~~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
|.+++.......|||+.++++|.++|
T Consensus 573 ~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 573 MMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 88888887666799999999999886
No 100
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.57 E-value=8.4e-13 Score=127.47 Aligned_cols=280 Identities=14% Similarity=0.096 Sum_probs=196.4
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
.-|+|.+|++. ++..+....|. +-..+|-.++. .+++..+ | ....+ ++.+-.+|.|
T Consensus 123 ~~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs---~eifr~L---P---~r~ei----------l~glL~aDlI 183 (474)
T PRK10117 123 DDDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPT---PEIFNAL---P---PHDEL----------LEQLCDYDLL 183 (474)
T ss_pred CCCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCC---hHHHhhC---C---ChHHH----------HHHHHhCccc
Confidence 45899999864 44555444332 66667764332 1111111 1 11111 1334467888
Q ss_pred EEcChhhHHHHHHHh----cCC------------CCcEEEecCCccCCCcCCCc-----ccchhhhhhhCCCCCCcEEEE
Q 011355 239 VATSDHCGDVLKRIY----MIP------------EERVHVILNGVDEEVFKPDV-----AMGKDFKKKFGIPENRSLVLG 297 (488)
Q Consensus 239 i~~S~~~~~~~~~~~----g~~------------~~~i~vi~ngvd~~~~~~~~-----~~~~~~r~~~~i~~~~~~~i~ 297 (488)
=+.+....+.+.+.. |.. .-++.+.|-|||.+.|.... .....++++++ ++ .+|+
T Consensus 184 GFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~---~~-~lil 259 (474)
T PRK10117 184 GFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELK---NV-QNIF 259 (474)
T ss_pred eeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcC---CC-eEEE
Confidence 888887777666522 211 11356777789987664321 12245666654 34 4677
Q ss_pred EEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC--c---hh----HHhhh--------C----CcEEEe-Cc
Q 011355 298 MAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP--W---GA----RYRDL--------G----TNVIVL-GP 355 (488)
Q Consensus 298 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~--~---~~----~~~~l--------~----~~V~~~-g~ 355 (488)
-+.|++..||+..=++||+.+.+++|+++.++.|+-+.... . .+ +++++ + .-|.++ ..
T Consensus 260 gVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~ 339 (474)
T PRK10117 260 SVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQH 339 (474)
T ss_pred EecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCC
Confidence 89999999999999999999999998888888888665321 1 11 11111 1 125444 56
Q ss_pred cCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC-----cEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHH
Q 011355 356 LDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK-----PLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 356 v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~-----PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
++.+++..+|..||+++.++.+ +|+.++..|+.+|.. .+|.|.+.|.. +.+ ...++++| |.+++|++|.
T Consensus 340 ~~~~~l~alyr~ADv~lVTplR-DGMNLVAkEyva~q~~~~~GvLILSefAGaA-~~L---~~AllVNP~d~~~~A~Ai~ 414 (474)
T PRK10117 340 FDRKLLMKIFRYSDVGLVTPLR-DGMNLVAKEYVAAQDPANPGVLVLSQFAGAA-NEL---TSALIVNPYDRDEVAAALD 414 (474)
T ss_pred CCHHHHHHHHHhccEEEecccc-cccccccchheeeecCCCCccEEEecccchH-HHh---CCCeEECCCCHHHHHHHHH
Confidence 8999999999999999999987 999999999999976 38889999987 444 24799999 9999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 430 GIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 430 ~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
+.++.+++++++..+..++.+.+ ++....++.+.+-+.++..
T Consensus 415 ~AL~Mp~~Er~~R~~~l~~~v~~-~dv~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 415 RALTMPLAERISRHAEMLDVIVK-NDINHWQECFISDLKQIVP 456 (474)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHhhh
Confidence 99999888888888888898866 6999999998887777644
No 101
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.57 E-value=2e-12 Score=126.74 Aligned_cols=278 Identities=18% Similarity=0.204 Sum_probs=166.8
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
.-|+|.+|++. ++..+....|+ +...+|-.++. .++ ++.. +....+ ++.+-.||.|
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs---~e~----fr~l--P~r~ei----------L~glL~aDlI 201 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPS---SEI----FRCL--PWREEI----------LRGLLGADLI 201 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S-------HHH----HTTS--TTHHHH----------HHHHTTSSEE
T ss_pred CCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCC---HHH----HhhC--CcHHHH----------HHHhhcCCEE
Confidence 67999999854 56666655443 56666764321 111 1111 111111 1345679999
Q ss_pred EEcChhhHHHHHHH----hcCC--CC-----------cEEEecCCccCCCcCCC------cccchhhhhhhCCCCCCcEE
Q 011355 239 VATSDHCGDVLKRI----YMIP--EE-----------RVHVILNGVDEEVFKPD------VAMGKDFKKKFGIPENRSLV 295 (488)
Q Consensus 239 i~~S~~~~~~~~~~----~g~~--~~-----------~i~vi~ngvd~~~~~~~------~~~~~~~r~~~~i~~~~~~~ 295 (488)
-+.+....+.+... +|.. .. ++.+.|-|||.+.+... ......++++++ .+. .+
T Consensus 202 gFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~-~i 278 (474)
T PF00982_consen 202 GFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--GKR-KI 278 (474)
T ss_dssp EESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T-S-EE
T ss_pred EEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--CCc-EE
Confidence 99998888777553 2221 11 36677778888766432 112355777764 223 57
Q ss_pred EEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC--ch-------hHHhh--------hC----CcEE-Ee
Q 011355 296 LGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP--WG-------ARYRD--------LG----TNVI-VL 353 (488)
Q Consensus 296 i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~--~~-------~~~~~--------l~----~~V~-~~ 353 (488)
|+.+.|++..||+..=+.||.++.+++|+++.++.|+-++... .. +++.+ .+ .-|. +.
T Consensus 279 i~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~ 358 (474)
T PF00982_consen 279 IVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIY 358 (474)
T ss_dssp EEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-
T ss_pred EEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEe
Confidence 7899999999999999999999999998888889988776421 11 11111 11 1244 45
Q ss_pred CccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCc----EEEeCCCCcccceeecCCceeEeCC-CHHHHHHHH
Q 011355 354 GPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKP----LMATRLASIVGSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 354 g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~P----VI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
+.++.+++..+|+.||+++.+|.+ +|+.++..|+.+|..+ +|.|.+.|.. +.+ ++..++++| |.+++|++|
T Consensus 359 ~~~~~~~~~aly~~aDv~lvTslr-DGmNLva~Eyva~q~~~~GvLiLSefaGaa-~~L--~~~al~VNP~d~~~~A~ai 434 (474)
T PF00982_consen 359 RSLSFEELLALYRAADVALVTSLR-DGMNLVAKEYVACQDDNPGVLILSEFAGAA-EQL--SEAALLVNPWDIEEVADAI 434 (474)
T ss_dssp S---HHHHHHHHHH-SEEEE--SS-BS--HHHHHHHHHS-TS--EEEEETTBGGG-GT---TTS-EEE-TT-HHHHHHHH
T ss_pred cCCCHHHHHHHHHhhhhEEecchh-hccCCcceEEEEEecCCCCceEeeccCCHH-HHc--CCccEEECCCChHHHHHHH
Confidence 679999999999999999999987 9999999999999875 7888888877 444 224489999 999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 429 YGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 429 ~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
.+.++.++++++..-+..++++.+ ++....++.+.+-++
T Consensus 435 ~~AL~M~~~Er~~r~~~~~~~v~~-~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 435 HEALTMPPEERKERHARLREYVRE-HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHT--HHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhHh-CCHHHHHHHHHHHhh
Confidence 999998788888888888898866 699998888876554
No 102
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.53 E-value=6.7e-13 Score=128.84 Aligned_cols=185 Identities=11% Similarity=0.090 Sum_probs=138.3
Q ss_pred CCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHH
Q 011355 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMF 312 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll 312 (488)
.+.|.||+.++...+.+.++++ +..++.++|-|+-.. ..... ..+..+++++. +..|
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~-~~~~~~~ip~g~i~~---~~~~~------------r~~~~~l~~t~-------s~~I 294 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLD-NEYQEQISQLGYLYP---FKKDN------------KYRKQALILTN-------SDQI 294 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhC-cccCceEEEEEEEEe---ecccc------------CCcccEEEECC-------HHHH
Confidence 6889999999988888888775 356778888876521 11111 11123445551 8899
Q ss_pred HHHHHhHhhccCCCCCeEEEEEeCCCc-hhHHhhhC--CcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHH
Q 011355 313 EALKQLLAENDTFRRSTVFLVAGDGPW-GARYRDLG--TNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAM 389 (488)
Q Consensus 313 ~a~~~l~~~~~~~~~~~~l~ivG~g~~-~~~~~~l~--~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAm 389 (488)
++++.+.++. |+++|.| |.+.+ ...+.++. +||+..+.+...++.++|..||+++..|. +|++++++.||+
T Consensus 295 ~~i~~Lv~~l----Pd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~-~e~~~~al~eA~ 368 (438)
T TIGR02919 295 EHLEEIVQAL----PDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINH-GNEILNAVRRAF 368 (438)
T ss_pred HHHHHHHHhC----CCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccc-cccHHHHHHHHH
Confidence 9999999999 9999999 76654 44444432 56655555556689999999999999996 699999999999
Q ss_pred HcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011355 390 LSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRG 450 (488)
Q Consensus 390 a~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~ 450 (488)
..|+||++.+....+.+++.+ |.+++. ++++++++|.+++.+ ++.++..-..-++.+
T Consensus 369 ~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d-~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 369 EYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND-PNQFRELLEQQREHA 426 (438)
T ss_pred HcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh
Confidence 999999999877555455554 789998 999999999999999 766665544444444
No 103
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.52 E-value=8.3e-13 Score=128.01 Aligned_cols=244 Identities=18% Similarity=0.167 Sum_probs=142.5
Q ss_pred HHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCccc-------chh----hhh----hhCCC
Q 011355 225 VVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAM-------GKD----FKK----KFGIP 289 (488)
Q Consensus 225 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~-------~~~----~r~----~~~i~ 289 (488)
..-|......||.+.++|+-++......++-+++ .|+|||++.+.++...+- ++. ++. .+++.
T Consensus 212 ~~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pD--vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd 289 (633)
T PF05693_consen 212 HSIERAAAHYADVFTTVSEITAKEAEHLLKRKPD--VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFD 289 (633)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHHHHHHHHSS--S--EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-
T ss_pred HHHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCC--EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 3334455678999999999999998887764333 688999999877664321 111 121 23445
Q ss_pred CCCcEEEEEEeeec-cccChHHHHHHHHHhHhhccCCCCC---eEEEEEeCCCc---h---------hHHhh--------
Q 011355 290 ENRSLVLGMAGRLV-KDKGHPLMFEALKQLLAENDTFRRS---TVFLVAGDGPW---G---------ARYRD-------- 345 (488)
Q Consensus 290 ~~~~~~i~~~Grl~-~~Kg~~~ll~a~~~l~~~~~~~~~~---~~l~ivG~g~~---~---------~~~~~-------- 345 (488)
.++.+.|...||.+ ..||+|.+|+|+.+|......-..+ +-|+|+..... - +.+++
T Consensus 290 ~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~ 369 (633)
T PF05693_consen 290 LDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEK 369 (633)
T ss_dssp GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55668888999997 5799999999999885421000022 33555543210 0 00000
Q ss_pred -----------------------------------------------------------------h----CC--cEEEeC
Q 011355 346 -----------------------------------------------------------------L----GT--NVIVLG 354 (488)
Q Consensus 346 -----------------------------------------------------------------l----~~--~V~~~g 354 (488)
+ .+ +|+|.+
T Consensus 370 ~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P 449 (633)
T PF05693_consen 370 IGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHP 449 (633)
T ss_dssp HHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--
T ss_pred HHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEee
Confidence 0 12 356654
Q ss_pred -ccC------HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceee-cCCceeEe-CC---
Q 011355 355 -PLD------QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIV-GTDMGYLF-SP--- 419 (488)
Q Consensus 355 -~v~------~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~-~~~~g~l~-~~--- 419 (488)
+++ .-+..+++..||+.|+||++ |.+|.+.+|+.++|+|.|+|+..|.-. +.+. ....|+.+ +-
T Consensus 450 ~yL~~~dgif~l~Y~dfv~GcdLgvFPSYY-EPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~ 528 (633)
T PF05693_consen 450 EYLSGTDGIFNLDYYDFVRGCDLGVFPSYY-EPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDK 528 (633)
T ss_dssp S---TTSSSS-S-HHHHHHHSSEEEE--SS-BSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS
T ss_pred ccccCCCCCCCCCHHHHhccCceeeecccc-ccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCC
Confidence 222 34678999999999999985 999999999999999999999887531 2222 22345444 32
Q ss_pred C----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 420 Q----VESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 420 d----~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
+ ++++++.|.++...+...+..++.++.+.. +..+|+++...|.+.|+..+.
T Consensus 529 n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS-~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 529 NYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLS-DLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp -HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHG-GGGBHHHHCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence 2 567777777777765667777777776655 558999999999998886554
No 104
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.50 E-value=1.2e-13 Score=105.13 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=84.2
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011355 370 IFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKR 449 (488)
Q Consensus 370 v~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~ 449 (488)
+.++|+. ..+++.+++|+||||+|||+.+.++.. +++.++..++.++ |++++.+++..+++| ++.+++++++|++.
T Consensus 1 i~Ln~~~-~~~~~~r~~E~~a~G~~vi~~~~~~~~-~~~~~~~~~~~~~-~~~el~~~i~~ll~~-~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 1 INLNPSR-SDGPNMRIFEAMACGTPVISDDSPGLR-EIFEDGEHIITYN-DPEELAEKIEYLLEN-PEERRRIAKNARER 76 (92)
T ss_pred CEeeCCC-CCCCchHHHHHHHCCCeEEECChHHHH-HHcCCCCeEEEEC-CHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
Confidence 3577886 489999999999999999999999988 7888888999999 999999999999999 99999999999999
Q ss_pred HhhhCCHHHHHHHHH
Q 011355 450 GLNLFTATKMAAAYE 464 (488)
Q Consensus 450 ~~~~fs~~~~~~~~~ 464 (488)
+.++|+|++.++++.
T Consensus 77 v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 77 VLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHhCCHHHHHHHHH
Confidence 999999999998875
No 105
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.49 E-value=1.2e-11 Score=129.34 Aligned_cols=279 Identities=12% Similarity=0.125 Sum_probs=196.1
Q ss_pred cEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEE
Q 011355 166 DVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVA 240 (488)
Q Consensus 166 Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 240 (488)
|+|.+|++. ++.++....|. +...+|..++. .+++ +.+...-.-++.+-.||.|=+
T Consensus 203 d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs---~eif----------------r~LP~r~eiL~glL~aDlIGF 263 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPS---SEIY----------------KTLPIREELLRALLNSDLIGF 263 (854)
T ss_pred CEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCC---hHHH----------------hhCCcHHHHHHHHhcCCeEEe
Confidence 899999864 45666555443 66667764332 1111 111111111244567899999
Q ss_pred cChhhHHHHHHH----hcCC---------------CCcEEEecCCccCCCcCCCc------ccchhhhhhhCCCCCCcEE
Q 011355 241 TSDHCGDVLKRI----YMIP---------------EERVHVILNGVDEEVFKPDV------AMGKDFKKKFGIPENRSLV 295 (488)
Q Consensus 241 ~S~~~~~~~~~~----~g~~---------------~~~i~vi~ngvd~~~~~~~~------~~~~~~r~~~~i~~~~~~~ 295 (488)
.+...++.|.+. .|+. .-++.+.|-|||...+.... ....+++++++- +++ .+
T Consensus 264 ht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~ 341 (854)
T PLN02205 264 HTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDR-IM 341 (854)
T ss_pred cCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCC-EE
Confidence 988877777662 2321 11355777899987664321 123456666642 234 67
Q ss_pred EEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCC-----CchhHHh----h--------hC----CcEEEe-
Q 011355 296 LGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDG-----PWGARYR----D--------LG----TNVIVL- 353 (488)
Q Consensus 296 i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g-----~~~~~~~----~--------l~----~~V~~~- 353 (488)
|+-+.|++..||+..=+.|++++.+++|+++.++.|+-+... +..++++ + .+ ..|+++
T Consensus 342 ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~ 421 (854)
T PLN02205 342 LLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLID 421 (854)
T ss_pred EEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEe
Confidence 889999999999999999999999999887778888866532 2222222 1 11 235555
Q ss_pred CccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC-------------------cEEEeCCCCcccceeecCCce
Q 011355 354 GPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK-------------------PLMATRLASIVGSVIVGTDMG 414 (488)
Q Consensus 354 g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~-------------------PVI~~~~~~~~~e~v~~~~~g 414 (488)
..++.+++..+|+.||+++.++.+ +|+.++..|+.+|.. .+|.|.+.|.. ..+ ...
T Consensus 422 ~~~~~~e~~aly~~ADv~lVT~lR-DGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa-~~L---~~A 496 (854)
T PLN02205 422 APLKFYERVAYYVVAECCLVTAVR-DGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCS-PSL---SGA 496 (854)
T ss_pred cCCCHHHHHHHHHhccEEEecccc-ccccccchheeEEccCccccccccccccccCCCCceEeeeccchh-HHh---CcC
Confidence 678999999999999999999987 999999999999864 37778888876 334 347
Q ss_pred eEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Q 011355 415 YLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 415 ~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
++++| |.+++|++|.+.++.++++++..-++.++++.+ ++....++.+.+-++...
T Consensus 497 i~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~-~d~~~W~~~fl~~l~~~~ 553 (854)
T PLN02205 497 IRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVST-HDVGYWARSFLQDLERTC 553 (854)
T ss_pred eEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHH
Confidence 99999 999999999999998888888877888888866 699998888877666653
No 106
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=3.4e-11 Score=115.78 Aligned_cols=278 Identities=18% Similarity=0.199 Sum_probs=197.5
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
+=|+|.+|++. ++..+...+|. +...+|-.++. + -+.+.+.....-++.+-.+|.|
T Consensus 147 ~gDiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPs---s----------------Evfr~lP~r~eIl~gll~~dli 207 (486)
T COG0380 147 PGDIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPS---S----------------EVFRCLPWREEILEGLLGADLI 207 (486)
T ss_pred CCCEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCC---H----------------HHHhhCchHHHHHHHhhcCCee
Confidence 45999999864 45666666654 55556654332 1 1122222222222445678888
Q ss_pred EEcChhhHHHHHHHhc-C----------------CCCcEEEecCCccCCCcCCCc------ccchhhhhhhCCCCCCcEE
Q 011355 239 VATSDHCGDVLKRIYM-I----------------PEERVHVILNGVDEEVFKPDV------AMGKDFKKKFGIPENRSLV 295 (488)
Q Consensus 239 i~~S~~~~~~~~~~~g-~----------------~~~~i~vi~ngvd~~~~~~~~------~~~~~~r~~~~i~~~~~~~ 295 (488)
-..++..++.|.+... + ...++...|-|+|...+.... ....++++.++ .++ .+
T Consensus 208 gFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~-ki 284 (486)
T COG0380 208 GFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNK-KL 284 (486)
T ss_pred EecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCc-eE
Confidence 8888888777665321 0 113566777899987765432 12345566654 224 56
Q ss_pred EEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch--hH---Hh----h--------hC----CcEEEe-
Q 011355 296 LGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG--AR---YR----D--------LG----TNVIVL- 353 (488)
Q Consensus 296 i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~--~~---~~----~--------l~----~~V~~~- 353 (488)
|+.+.|++.-||+..=+.||.++..++|+++.++.++-++..... +. ++ + .+ .-|+++
T Consensus 285 ivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~ 364 (486)
T COG0380 285 IVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLH 364 (486)
T ss_pred EEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEe
Confidence 778999999999999999999999999888888888877753211 11 11 1 01 234444
Q ss_pred CccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC----cEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHH
Q 011355 354 GPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK----PLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 354 g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~----PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
-.++.+++..+|..||+++..+++ +|+.++..|+.+|.- |.|-|.+.|.. ..+. ..++++| |.++++++|
T Consensus 365 ~~~~~~~l~al~~~aDv~lVtplr-DGMNLvakEyVa~q~~~~G~LiLSeFaGaa-~~L~---~AliVNP~d~~~va~ai 439 (486)
T COG0380 365 RDLDRNELLALYRAADVMLVTPLR-DGMNLVAKEYVAAQRDKPGVLILSEFAGAA-SELR---DALIVNPWDTKEVADAI 439 (486)
T ss_pred ccCCHHHHHHHHhhhceeeecccc-ccccHHHHHHHHhhcCCCCcEEEeccccch-hhhc---cCEeECCCChHHHHHHH
Confidence 468999999999999999999987 999999999999854 88889988877 4443 3799999 999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 429 YGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 429 ~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
.+.++.+++++++.-+..++.+.+ ++....++.+.+-+.+
T Consensus 440 ~~AL~m~~eEr~~r~~~~~~~v~~-~d~~~W~~~fl~~la~ 479 (486)
T COG0380 440 KRALTMSLEERKERHEKLLKQVLT-HDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 999999888888888888888876 6898888887766554
No 107
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.46 E-value=2.1e-10 Score=110.37 Aligned_cols=334 Identities=14% Similarity=0.108 Sum_probs=186.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCCC-----CC---CCC---ceEEEecCCCCccC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCLNCSF-----PT---YPI---SSLYFHLSKPTAAG 144 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~-----~~---~~~---~~i~~~~~~~~~~~ 144 (488)
|||++++..= -. -.-+..++++|++. ++++.++......... .. .+. +.+.+.........
T Consensus 1 ~ki~~v~GtR------pe-~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (365)
T TIGR03568 1 KKICVVTGTR------AD-YGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAG 73 (365)
T ss_pred CeEEEEEecC------hh-HHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCC
Confidence 6899998632 22 23456889999875 7888888765432111 00 111 11222111110001
Q ss_pred -cchhHHHHHHHHHHhcCCCCCcEEEeCCc------chHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHH
Q 011355 145 -YLDQSIVWQQLQTQNSTGKPFDVIHTESV------GLRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYA 217 (488)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~------~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (488)
..........+.....+. +||+|++++- +.......++| ++..--+..... .+. ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~-~Pd~vlv~GD~~~~la~alaA~~~~IP-v~HveaG~rs~~-----------~~e----E~ 136 (365)
T TIGR03568 74 MAKSMGLTIIGFSDAFERL-KPDLVVVLGDRFEMLAAAIAAALLNIP-IAHIHGGEVTEG-----------AID----ES 136 (365)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCEEEEeCCchHHHHHHHHHHHhCCc-EEEEECCccCCC-----------Cch----HH
Confidence 122233344444444444 8999999862 23333445667 543322211100 000 01
Q ss_pred HHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecC-CccCCCcCCCcccchhhhhhhCCCCCCcEEE
Q 011355 218 LAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILN-GVDEEVFKPDVAMGKDFKKKFGIPENRSLVL 296 (488)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~n-gvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i 296 (488)
....+.+ -++..++.++..++.+.+ -|.++.++.++.| ++|.-.... ......+.+++|++.++++++
T Consensus 137 ~r~~i~~---------la~l~f~~t~~~~~~L~~-eg~~~~~i~~tG~~~iD~l~~~~-~~~~~~~~~~lgl~~~~~~vl 205 (365)
T TIGR03568 137 IRHAITK---------LSHLHFVATEEYRQRVIQ-MGEDPDRVFNVGSPGLDNILSLD-LLSKEELEEKLGIDLDKPYAL 205 (365)
T ss_pred HHHHHHH---------HHhhccCCCHHHHHHHHH-cCCCCCcEEEECCcHHHHHHhhh-ccCHHHHHHHhCCCCCCCEEE
Confidence 1111111 234457788888888887 7888889999988 555432211 123467788899875544655
Q ss_pred EEEeeec--cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc----hhHHhhh---CCcEEEeCccCHHHHHHHHHh
Q 011355 297 GMAGRLV--KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW----GARYRDL---GTNVIVLGPLDQTRLAMFYNA 367 (488)
Q Consensus 297 ~~~Grl~--~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~----~~~~~~l---~~~V~~~g~v~~~~l~~~~~~ 367 (488)
+.+-+-. .....+.+.+.++.+.+.. .++.++.-..++. .+.++++ .++|.+.+.++..++..+++.
T Consensus 206 vt~Hp~~~~~~~~~~~l~~li~~L~~~~----~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~ 281 (365)
T TIGR03568 206 VTFHPVTLEKESAEEQIKELLKALDELN----KNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKN 281 (365)
T ss_pred EEeCCCcccccCchHHHHHHHHHHHHhc----cCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHh
Confidence 5554432 3333344444444444333 3443322112221 2233332 368999999999999999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVAR 447 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~ 447 (488)
||++|.-|. | .+.||.++|+|||+-. .-+ |.+..+.+++++..|++++.+++.+++ + ++.+..+
T Consensus 282 a~~vitdSS-----g-gi~EA~~lg~Pvv~l~--~R~-e~~~~g~nvl~vg~~~~~I~~a~~~~~-~-~~~~~~~----- 345 (365)
T TIGR03568 282 ADAVIGNSS-----S-GIIEAPSFGVPTINIG--TRQ-KGRLRADSVIDVDPDKEEIVKAIEKLL-D-PAFKKSL----- 345 (365)
T ss_pred CCEEEEcCh-----h-HHHhhhhcCCCEEeec--CCc-hhhhhcCeEEEeCCCHHHHHHHHHHHh-C-hHHHHHH-----
Confidence 999996541 2 2389999999999653 444 677778888878669999999999954 4 3332222
Q ss_pred HHHhhhCCHHHHHHHHHH
Q 011355 448 KRGLNLFTATKMAAAYER 465 (488)
Q Consensus 448 ~~~~~~fs~~~~~~~~~~ 465 (488)
.....-|...+.++++.+
T Consensus 346 ~~~~~pygdg~as~rI~~ 363 (365)
T TIGR03568 346 KNVKNPYGDGNSSERIIE 363 (365)
T ss_pred hhCCCCCCCChHHHHHHH
Confidence 112233555555555544
No 108
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.42 E-value=4.6e-11 Score=113.80 Aligned_cols=292 Identities=19% Similarity=0.155 Sum_probs=162.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceE-----EEecCCCCccC---cc--
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSL-----YFHLSKPTAAG---YL-- 146 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~---~~-- 146 (488)
|||++.+.+ ..-|.-.....++++| +||+|++++.......... ..... ........... ..
T Consensus 1 MkIl~~v~~-----~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQG-----HGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-RFPVREIPGLGPIQENGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCC-----CCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-ccCEEEccCceEeccCCccchHHHHHHH
Confidence 899999973 4567777888999999 4899999998864322211 12221 11111111000 00
Q ss_pred -----hhHHHHHHHHHHhcCCCCCcEEEeCCcchH--HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHH
Q 011355 147 -----DQSIVWQQLQTQNSTGKPFDVIHTESVGLR--HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALA 219 (488)
Q Consensus 147 -----~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~--~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (488)
................ +||+|++....+. .....++| .+...|..+........ + ....+.
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~-~pDlVIsD~~~~~~~aa~~~giP-~i~i~~~~~~~~~~~~~-------~---~~~~~~ 140 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLREF-RPDLVISDFYPLAALAARRAGIP-VIVISNQYWFLHPNFWL-------P---WDQDFG 140 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHhc-CCCEEEEcChHHHHHHHHhcCCC-EEEEEehHHcccccCCc-------c---hhhhHH
Confidence 0111222222333333 8999999864433 33445678 66655553322111100 0 001222
Q ss_pred HHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEE
Q 011355 220 ERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMA 299 (488)
Q Consensus 220 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~ 299 (488)
..+.+...+. .+..++..+..+-... .. +..++.+++..+........ +.+++.+++++
T Consensus 141 ~~~~~~~~~~-~~~~~~~~l~~~~~~~-~~------~~~~~~~~~p~~~~~~~~~~-------------~~~~~~iLv~~ 199 (318)
T PF13528_consen 141 RLIERYIDRY-HFPPADRRLALSFYPP-LP------PFFRVPFVGPIIRPEIRELP-------------PEDEPKILVYF 199 (318)
T ss_pred HHHHHhhhhc-cCCcccceecCCcccc-cc------ccccccccCchhcccccccC-------------CCCCCEEEEEe
Confidence 2223322211 2455555555553311 00 01122333333322211111 12333788899
Q ss_pred eeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCC
Q 011355 300 GRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQ 379 (488)
Q Consensus 300 Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~e 379 (488)
|..+.. .++++++.+ ++..++++|.+.... ..+||++.++. .+++.++++.||++|...
T Consensus 200 gg~~~~----~~~~~l~~~--------~~~~~~v~g~~~~~~----~~~ni~~~~~~-~~~~~~~m~~ad~vIs~~---- 258 (318)
T PF13528_consen 200 GGGGPG----DLIEALKAL--------PDYQFIVFGPNAADP----RPGNIHVRPFS-TPDFAELMAAADLVISKG---- 258 (318)
T ss_pred CCCcHH----HHHHHHHhC--------CCCeEEEEcCCcccc----cCCCEEEeecC-hHHHHHHHHhCCEEEECC----
Confidence 987555 567777665 778888888653111 26899999873 379999999999999733
Q ss_pred CCChHHHHHHHcCCcEEEeCCCCcccc-----eeecCCceeEeCC---CHHHHHHHHHHH
Q 011355 380 GLDHTVLEAMLSGKPLMATRLASIVGS-----VIVGTDMGYLFSP---QVESVKKALYGI 431 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~~~~~~e-----~v~~~~~g~l~~~---d~~~la~~i~~l 431 (488)
|+ .++.||+++|+|+|.....+..|+ .+.+.+.|..++. +.+.|++.|+++
T Consensus 259 G~-~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 259 GY-TTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CH-HHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 33 379999999999999988765532 3455667777653 678888888764
No 109
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.42 E-value=1.1e-12 Score=111.18 Aligned_cols=151 Identities=25% Similarity=0.310 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCCCccCcchhHHHHHHHHHHh--cCCCCCcEE
Q 011355 93 GGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKPTAAGYLDQSIVWQQLQTQN--STGKPFDVI 168 (488)
Q Consensus 93 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dvv 168 (488)
||+++++.+++++|.++||+|++++.......... .+.....+...... ..+........+.... ... +||+|
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-~~Dvv 77 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRP--WPLRLLRFLRRLRRLLAARRE-RPDVV 77 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SS--SGGGHCCHHHHHHHHCHHCT----SEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccc--hhhhhHHHHHHHHHHHhhhcc-CCeEE
Confidence 89999999999999999999999998765543321 22222222222211 1111111222333332 333 89999
Q ss_pred EeCCcc---hHHhh--hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcCh
Q 011355 169 HTESVG---LRHTR--ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSD 243 (488)
Q Consensus 169 ~~~~~~---~~~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~ 243 (488)
|+|+.. +..+. ..++| ++.++|+..... ...+...+...+.+ ..++++|.++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~ad~vi~~S~ 138 (160)
T PF13579_consen 78 HAHSPTAGLVAALARRRRGIP-LVVTVHGTLFRR-------------GSRWKRRLYRWLER-----RLLRRADRVIVVSE 138 (160)
T ss_dssp EEEHHHHHHHHHHHHHHHT---EEEE-SS-T-------------------HHHHHHHHHHH-----HHHHH-SEEEESSH
T ss_pred EecccchhHHHHHHHHccCCc-EEEEECCCchhh-------------ccchhhHHHHHHHH-----HHHhcCCEEEECCH
Confidence 999742 11111 24567 999999843211 01111233333322 56788999999999
Q ss_pred hhHHHHHHHhcCCCCcEEEecCC
Q 011355 244 HCGDVLKRIYMIPEERVHVILNG 266 (488)
Q Consensus 244 ~~~~~~~~~~g~~~~~i~vi~ng 266 (488)
..++.+.+ +|++++++.|||||
T Consensus 139 ~~~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 139 AMRRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHHHH-H---GGGEEE----
T ss_pred HHHHHHHH-hCCCCCcEEEeCcC
Confidence 99999999 89999999999997
No 110
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.40 E-value=2.4e-10 Score=111.08 Aligned_cols=336 Identities=15% Similarity=0.030 Sum_probs=182.8
Q ss_pred CCCcHHHHHHHHHHHHHH--CCCeEE---EEecCCCCCCCCCCCC-ceEEEecCCCCccCcch----hHH-----HHHHH
Q 011355 91 HAGGLERHALTLHLALAK--RGHELH---IFTASCLNCSFPTYPI-SSLYFHLSKPTAAGYLD----QSI-----VWQQL 155 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~--~G~~V~---v~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~----~~~-----~~~~~ 155 (488)
+..|.......++++|.+ .|++|. ++.....-........ +...++........... ... .++++
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~ 84 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQW 84 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHH
Confidence 446777889999999998 599999 6655543221111110 11111111100011111 111 12222
Q ss_pred HHHhcCCCCCcEEEeCCcchHH--hhhccCCcEEEeeeCCcchh------hhhhhhHhhhcCCCChhHHHHHHHHHHHHH
Q 011355 156 QTQNSTGKPFDVIHTESVGLRH--TRARNLTNVVVSWHGIAYET------IHSDIIQELLRTPEEPQAYALAERASKVVE 227 (488)
Q Consensus 156 ~~~~~~~~~~Dvv~~~~~~~~~--~~~~~~p~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (488)
....+..++||+|+...-..+. ....++|-+++..|.-.+.. .+.+.+ .+.++..+..+ . -.+
T Consensus 85 ~~~~~~~~~p~~v~~~Gg~v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~---~~~~G~~~~p~-e--~n~--- 155 (396)
T TIGR03492 85 RALRKWAKKGDLIVAVGDIVPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEY---HRLEGSLYLPW-E--RWL--- 155 (396)
T ss_pred HHHHHHhhcCCEEEEECcHHHHHHHHHcCCCceEEEeeccceeecCCCCCccchhh---hccCCCccCHH-H--HHH---
Confidence 2222222279999987633322 23345674555556532220 001111 11121111111 0 011
Q ss_pred HhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecc--c
Q 011355 228 EVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVK--D 305 (488)
Q Consensus 228 ~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~--~ 305 (488)
-.-+.|+.+.+..+...+.+.+ .|+ ++.++.|++-........ . +++++.+.+++..|+-.. .
T Consensus 156 --l~~~~a~~v~~~~~~t~~~l~~-~g~---k~~~vGnPv~d~l~~~~~-------~--~l~~~~~~lllLpGSR~ae~~ 220 (396)
T TIGR03492 156 --MRSRRCLAVFVRDRLTARDLRR-QGV---RASYLGNPMMDGLEPPER-------K--PLLTGRFRIALLPGSRPPEAY 220 (396)
T ss_pred --hhchhhCEEeCCCHHHHHHHHH-CCC---eEEEeCcCHHhcCccccc-------c--ccCCCCCEEEEECCCCHHHHH
Confidence 1225678888888888888876 554 789999987433221111 0 444555456666666533 3
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEe-CCCchhHHhh----hC----------------CcEEEeCccCHHHHHHH
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAG-DGPWGARYRD----LG----------------TNVIVLGPLDQTRLAMF 364 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG-~g~~~~~~~~----l~----------------~~V~~~g~v~~~~l~~~ 364 (488)
++.+.+++++..+.++ +++.+++.- .+...+.+++ .+ +++.+..+ ..++.++
T Consensus 221 ~~lp~~l~al~~L~~~-----~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ 293 (396)
T TIGR03492 221 RNLKLLLRALEALPDS-----QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG--RGAFAEI 293 (396)
T ss_pred ccHHHHHHHHHHHhhC-----CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEec--hHhHHHH
Confidence 6777999999998643 356665432 2333333322 11 12566666 5689999
Q ss_pred HHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc--ceeecC----CceeEeCC-CHHHHHHHHHHHHhcCHH
Q 011355 365 YNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG--SVIVGT----DMGYLFSP-QVESVKKALYGIWADGRE 437 (488)
Q Consensus 365 ~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~--e~v~~~----~~g~l~~~-d~~~la~~i~~ll~~~~~ 437 (488)
|+.||++|..| |.+..|++++|+|+|....++... .+.... +.+..+.. +.+.+++++.++++| ++
T Consensus 294 l~~ADlvI~rS------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d-~~ 366 (396)
T TIGR03492 294 LHWADLGIAMA------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLAD-PE 366 (396)
T ss_pred HHhCCEEEECc------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcC-HH
Confidence 99999999854 345599999999999987544310 111220 23344444 889999999999998 88
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHH
Q 011355 438 VLEKKGLVARKRGLNLFTATKMAAAYE 464 (488)
Q Consensus 438 ~~~~~~~~a~~~~~~~fs~~~~~~~~~ 464 (488)
.+++|.+++++...+....+.+++.+.
T Consensus 367 ~~~~~~~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 367 LLERCRRNGQERMGPPGASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 888887655554434344555554443
No 111
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=7.7e-10 Score=102.35 Aligned_cols=348 Identities=17% Similarity=0.145 Sum_probs=207.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEecCCCCC-CCCC-----CCC--ceEEEecCCCCccCc
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG-HELHIFTASCLNC-SFPT-----YPI--SSLYFHLSKPTAAGY 145 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~-~~~~-----~~~--~~i~~~~~~~~~~~~ 145 (488)
.+|||++|...=|. -.-+..+++++.+.+ .+..|+....... .... .+. +...+....+...-.
T Consensus 2 ~~~Kv~~I~GTRPE-------~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~ 74 (383)
T COG0381 2 KMLKVLTIFGTRPE-------AIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLG 74 (383)
T ss_pred CceEEEEEEecCHH-------HHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHH
Confidence 57899999864332 345668999999886 7777776654321 1111 111 333333332211111
Q ss_pred chhHHHHHHHHHHhcCCCCCcEEEeCC---cch---HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHH
Q 011355 146 LDQSIVWQQLQTQNSTGKPFDVIHTES---VGL---RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALA 219 (488)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~Dvv~~~~---~~~---~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (488)
-.....+..+.....+. +||+|.+|+ ..+ ......++| +...--|....... ++.+. .+.+.
T Consensus 75 ~~t~~~i~~~~~vl~~~-kPD~VlVhGDT~t~lA~alaa~~~~Ip-V~HvEAGlRt~~~~--~PEE~--------NR~l~ 142 (383)
T COG0381 75 EITGNIIEGLSKVLEEE-KPDLVLVHGDTNTTLAGALAAFYLKIP-VGHVEAGLRTGDLY--FPEEI--------NRRLT 142 (383)
T ss_pred HHHHHHHHHHHHHHHhh-CCCEEEEeCCcchHHHHHHHHHHhCCc-eEEEecccccCCCC--CcHHH--------HHHHH
Confidence 22233444444444444 999999995 222 233334567 55555453221100 11110 01222
Q ss_pred HHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCc-cCCCcCCC-cccchhhhhh-hCCCCCCcEEE
Q 011355 220 ERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGV-DEEVFKPD-VAMGKDFKKK-FGIPENRSLVL 296 (488)
Q Consensus 220 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngv-d~~~~~~~-~~~~~~~r~~-~~i~~~~~~~i 296 (488)
.. -+|..+++++..++.+.+ -|+++++++|++|.+ |.-..... .......... ++...++ +++
T Consensus 143 ~~------------~S~~hfapte~ar~nLl~-EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~-~iL 208 (383)
T COG0381 143 SH------------LSDLHFAPTEIARKNLLR-EGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKK-YIL 208 (383)
T ss_pred HH------------hhhhhcCChHHHHHHHHH-cCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCc-EEE
Confidence 22 245569999999999998 799999999999965 33211111 1111122222 3333333 666
Q ss_pred EEEeeeccc-cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC--chhH-HhhhC--CcEEEeCccCHHHHHHHHHhcCE
Q 011355 297 GMAGRLVKD-KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP--WGAR-YRDLG--TNVIVLGPLDQTRLAMFYNAIDI 370 (488)
Q Consensus 297 ~~~Grl~~~-Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~--~~~~-~~~l~--~~V~~~g~v~~~~l~~~~~~adv 370 (488)
+.+=|.... +++..+++++.++.+++ +++.++.--... .++. .+.++ ++|+++..++..+...++..|.+
T Consensus 209 vT~HRreN~~~~~~~i~~al~~i~~~~----~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~ 284 (383)
T COG0381 209 VTAHRRENVGEPLEEICEALREIAEEY----PDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL 284 (383)
T ss_pred EEcchhhcccccHHHHHHHHHHHHHhC----CCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE
Confidence 666555433 88999999999999888 676655443221 1111 23344 56999999999999999999977
Q ss_pred EEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011355 371 FVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRG 450 (488)
Q Consensus 371 ~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~ 450 (488)
.+.=| |...=||-..|+||++-+...-+.|.+ +.++-.++..+.+.+.+++..++++ ++.+++|+...-.+.
T Consensus 285 iltDS------GgiqEEAp~lg~Pvl~lR~~TERPE~v-~agt~~lvg~~~~~i~~~~~~ll~~-~~~~~~m~~~~npYg 356 (383)
T COG0381 285 ILTDS------GGIQEEAPSLGKPVLVLRDTTERPEGV-EAGTNILVGTDEENILDAATELLED-EEFYERMSNAKNPYG 356 (383)
T ss_pred EEecC------CchhhhHHhcCCcEEeeccCCCCccce-ecCceEEeCccHHHHHHHHHHHhhC-hHHHHHHhcccCCCc
Confidence 77533 336789999999999976654443544 4455667776899999999999999 888888876544443
Q ss_pred hhhCCHHHHHHHHHHHHH
Q 011355 451 LNLFTATKMAAAYERLFL 468 (488)
Q Consensus 451 ~~~fs~~~~~~~~~~~~~ 468 (488)
..+ +.+++++.+...+.
T Consensus 357 dg~-as~rIv~~l~~~~~ 373 (383)
T COG0381 357 DGN-ASERIVEILLNYFD 373 (383)
T ss_pred Ccc-hHHHHHHHHHHHhh
Confidence 332 44455544444443
No 112
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.6e-10 Score=110.50 Aligned_cols=335 Identities=16% Similarity=0.188 Sum_probs=204.0
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHH
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVW 152 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 152 (488)
+.++.||+++++.. ....++.....+.+.+.+..+||..+..+.+........+..-..+.... +..+.....
T Consensus 256 ~~~rlRvGylS~dl----r~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~---~~~dd~e~a 328 (620)
T COG3914 256 NGKRLRVGYLSSDL----RSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPI---GRMDDAEIA 328 (620)
T ss_pred cccceeEEEecccc----ccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheecc---CCcCHHHHH
Confidence 45789999999854 55666777888888888777999988887333222211111100010100 112233333
Q ss_pred HHHHHHhcCCCCCcEEEeCC-----cchHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHH
Q 011355 153 QQLQTQNSTGKPFDVIHTES-----VGLRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVE 227 (488)
Q Consensus 153 ~~~~~~~~~~~~~Dvv~~~~-----~~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (488)
.++.. . +.||.+--+ .....+..+..| +.+++-|.+.-..... ..
T Consensus 329 ~~I~~---d--~IdILvDl~g~T~d~r~~v~A~RpAP-iqvswlGy~aT~g~p~-~D----------------------- 378 (620)
T COG3914 329 NAIRT---D--GIDILVDLDGHTVDTRCQVFAHRPAP-IQVSWLGYPATTGSPN-MD----------------------- 378 (620)
T ss_pred HHHHh---c--CCeEEEeccCceeccchhhhhcCCCc-eEEeecccccccCCCc-ce-----------------------
Confidence 33222 2 789887532 223333344457 8888877543221000 00
Q ss_pred HhhhcCCccEEEEcChhhHHHHHHHh-cCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecccc
Q 011355 228 EVKFFPKYAHHVATSDHCGDVLKRIY-MIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDK 306 (488)
Q Consensus 228 ~~~~~~~~d~ii~~S~~~~~~~~~~~-g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~K 306 (488)
+--+|..+.+ +....++.+.. .+| -++-++|- +.+... .--|..+|+|++. ++++++++ ..|
T Consensus 379 ----Y~I~D~y~vP-p~ae~yysEkl~RLp-----~cy~p~d~--~~~v~p--~~sR~~lglp~~a-vVf~c~~n--~~K 441 (620)
T COG3914 379 ----YFISDPYTVP-PTAEEYYSEKLWRLP-----QCYQPVDG--FEPVTP--PPSRAQLGLPEDA-VVFCCFNN--YFK 441 (620)
T ss_pred ----EEeeCceecC-chHHHHHHHHHHhcc-----cccCCCCC--cccCCC--CcchhhcCCCCCe-EEEEecCC--ccc
Confidence 0012222333 55555555432 222 22334432 222111 2347889999988 77766664 577
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchh---HHhhh-------CCcEEEeCccCHHHHHHHHHhcCEEEeCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGA---RYRDL-------GTNVIVLGPLDQTRLAMFYNAIDIFVNPTL 376 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~---~~~~l-------~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 376 (488)
-.+.+++.+.++.+.. |+-.|++.|.|+..+ .++++ .++..|.+..+.++..+.|.-||+++-+.-
T Consensus 442 ~~pev~~~wmqIL~~v----P~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyP 517 (620)
T COG3914 442 ITPEVFALWMQILSAV----PNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYP 517 (620)
T ss_pred CCHHHHHHHHHHHHhC----CCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeeccc
Confidence 7888999999999998 999999998875443 23332 278999999999999999999999998663
Q ss_pred CCCCCChHHHHHHHcCCcEEEe-------CCCCcccceeec-CCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011355 377 RAQGLDHTVLEAMLSGKPLMAT-------RLASIVGSVIVG-TDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARK 448 (488)
Q Consensus 377 ~~eg~~~~~lEAma~G~PVI~~-------~~~~~~~e~v~~-~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~ 448 (488)
-|-..+.+||+.+|+|||+- +.|+ .++.. |..-+++. +.++..+.-..+-.| ...+++.+..-.+
T Consensus 518 --Y~g~TTa~daLwm~vPVlT~~G~~FasR~~~---si~~~agi~e~vA~-s~~dYV~~av~~g~d-ral~q~~r~~l~~ 590 (620)
T COG3914 518 --YGGHTTASDALWMGVPVLTRVGEQFASRNGA---SIATNAGIPELVAD-SRADYVEKAVAFGSD-RALRQQVRAELKR 590 (620)
T ss_pred --CCCccchHHHHHhcCceeeeccHHHHHhhhH---HHHHhcCCchhhcC-CHHHHHHHHHHhccc-HHHHHhhHHHHHh
Confidence 45578999999999999974 2222 12222 23333444 677777777776666 5555555544443
Q ss_pred HHhh--hCCHHHHHHHHHHHHHHhhc
Q 011355 449 RGLN--LFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 449 ~~~~--~fs~~~~~~~~~~~~~~~~~ 472 (488)
.... -|+.+.++++++.+|.++-+
T Consensus 591 ~r~tspL~d~~~far~le~~y~~M~~ 616 (620)
T COG3914 591 SRQTSPLFDPKAFARKLETLYWGMWS 616 (620)
T ss_pred ccccCcccCHHHHHHHHHHHHHHHHH
Confidence 3333 58999999999999998866
No 113
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.36 E-value=1.9e-10 Score=113.32 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=95.5
Q ss_pred CCCcEEEEEEeeecc---ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHH
Q 011355 290 ENRSLVLGMAGRLVK---DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYN 366 (488)
Q Consensus 290 ~~~~~~i~~~Grl~~---~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~ 366 (488)
++++.+++..|+... .+....+++++..+ +.-.++.+|...... ..+.+||.+.++++.. .++.
T Consensus 237 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~--------~~~~i~~~g~~~~~~--~~~~~~v~~~~~~p~~---~ll~ 303 (401)
T cd03784 237 AGRPPVYVGFGSMVVRDPEALARLDVEAVATL--------GQRAILSLGWGGLGA--EDLPDNVRVVDFVPHD---WLLP 303 (401)
T ss_pred CCCCcEEEeCCCCcccCHHHHHHHHHHHHHHc--------CCeEEEEccCccccc--cCCCCceEEeCCCCHH---HHhh
Confidence 345577788888754 23334444554433 233345566544322 3456899999998755 5588
Q ss_pred hcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCc----ccceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHH
Q 011355 367 AIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASI----VGSVIVGTDMGYLFSP---QVESVKKALYGIWADGREVL 439 (488)
Q Consensus 367 ~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~----~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~ 439 (488)
.||++|. + .| ..++.||+++|+|+|.....+- . +.+.+.+.|..++. +.+++.+++.+++++ + .+
T Consensus 304 ~~d~~I~---h-gG-~~t~~eal~~GvP~v~~P~~~dQ~~~a-~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~-~-~~ 375 (401)
T cd03784 304 RCAAVVH---H-GG-AGTTAAALRAGVPQLVVPFFGDQPFWA-ARVAELGAGPALDPRELTAERLAAALRRLLDP-P-SR 375 (401)
T ss_pred hhheeee---c-CC-chhHHHHHHcCCCEEeeCCCCCcHHHH-HHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH-H-HH
Confidence 8999995 2 34 4699999999999999876552 2 34555667777764 689999999999985 3 34
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 440 EKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 440 ~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
++..+.+.+.. +.-..+..++.+
T Consensus 376 ~~~~~~~~~~~-~~~g~~~~~~~i 398 (401)
T cd03784 376 RRAAALLRRIR-EEDGVPSAADVI 398 (401)
T ss_pred HHHHHHHHHHH-hccCHHHHHHHH
Confidence 44433333332 222444444433
No 114
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.32 E-value=6.7e-10 Score=114.18 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=130.7
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhc--cCCCCCeEEEEEeCCCch-----h---HHhhh------CCcEEEeCccC
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAEN--DTFRRSTVFLVAGDGPWG-----A---RYRDL------GTNVIVLGPLD 357 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~--~~~~~~~~l~ivG~g~~~-----~---~~~~l------~~~V~~~g~v~ 357 (488)
+++++++|+..+|+.++++..+..+.+-. ++ .+++++++|++... + .+.++ ..+|.|+...+
T Consensus 479 ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~--~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd 556 (778)
T cd04299 479 LTIGFARRFATYKRATLLLRDPERLKRLLNDPE--RPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYD 556 (778)
T ss_pred cEEeeeecchhhhhHHHHHHHHHHHHHHhhCCC--CCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCC
Confidence 78999999999999999999988775411 01 35999999985411 1 12222 35888887776
Q ss_pred HHHHHHHHHhcCEEEeCCCC-CCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-------------CHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLR-AQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-------------QVES 423 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~-~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-------------d~~~ 423 (488)
.+--..+++.||++++||++ -|.+|+.-+=||..|.+-+++--|... |.. ++.+|+.+.+ |.++
T Consensus 557 ~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~-E~~-~g~nGwaig~~~~~~~~~~~d~~da~~ 634 (778)
T cd04299 557 MALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWD-EGY-DGENGWAIGDGDEYEDDEYQDAEEAEA 634 (778)
T ss_pred HHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccc-ccc-CCCCceEeCCCccccChhhcchhhHHH
Confidence 66677889999999999971 389999999999999999999888877 554 7899999975 2445
Q ss_pred HHHHHHHHHh----c-----CHHHHHHHHHHHHHHHhhhCCHHHHHHHHHH-HHHH
Q 011355 424 VKKALYGIWA----D-----GREVLEKKGLVARKRGLNLFTATKMAAAYER-LFLC 469 (488)
Q Consensus 424 la~~i~~ll~----~-----~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~-~~~~ 469 (488)
|-+.|++-+. + .|..+.+|.+++...+...|||+.++++|.+ +|..
T Consensus 635 Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p 690 (778)
T cd04299 635 LYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLP 690 (778)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHH
Confidence 5566644222 2 1567888999998888889999999999876 4543
No 115
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.29 E-value=3.1e-09 Score=104.25 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=103.7
Q ss_pred CCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCE
Q 011355 291 NRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDI 370 (488)
Q Consensus 291 ~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv 370 (488)
+++.+++..|+....+. . +++.+.+...+. +.-.++.+|.+...+.++++.++|.+.+++++. +++..||+
T Consensus 224 ~~~~v~vs~Gs~~~~~~-~-~~~~~~~al~~~----~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~---~ll~~~~~ 294 (392)
T TIGR01426 224 GRPVVLISLGTVFNNQP-S-FYRTCVEAFRDL----DWHVVLSVGRGVDPADLGELPPNVEVRQWVPQL---EILKKADA 294 (392)
T ss_pred CCCEEEEecCccCCCCH-H-HHHHHHHHHhcC----CCeEEEEECCCCChhHhccCCCCeEEeCCCCHH---HHHhhCCE
Confidence 45577888888643332 2 343333233222 333345567665555566677899999999864 67899999
Q ss_pred EEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHHHH
Q 011355 371 FVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKKGL 444 (488)
Q Consensus 371 ~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~ 444 (488)
+|..+ | ..++.||+++|+|+|+....+-.. +.+.+.+.|..+.. +.++++++|.+++++ ++.++++.+
T Consensus 295 ~I~hg----G-~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~ 368 (392)
T TIGR01426 295 FITHG----G-MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSD-PRYAERLRK 368 (392)
T ss_pred EEECC----C-chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 99733 3 248999999999999976544221 23445567777663 689999999999998 665554433
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHH
Q 011355 445 VARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 445 ~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
..+.+...-..+..++.+++++
T Consensus 369 -l~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 369 -MRAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred -HHHHHHHcCCHHHHHHHHHHhh
Confidence 3333334446777776666554
No 116
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.20 E-value=1.1e-09 Score=104.35 Aligned_cols=212 Identities=16% Similarity=0.173 Sum_probs=120.6
Q ss_pred CccEEEEcChhhHHHHHHHhcCCCCcEEEecC-CccCCCcCCCcccchhh-hhhhCCCCCCcEEEEEEeeecc---ccCh
Q 011355 234 KYAHHVATSDHCGDVLKRIYMIPEERVHVILN-GVDEEVFKPDVAMGKDF-KKKFGIPENRSLVLGMAGRLVK---DKGH 308 (488)
Q Consensus 234 ~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~n-gvd~~~~~~~~~~~~~~-r~~~~i~~~~~~~i~~~Grl~~---~Kg~ 308 (488)
-++..++.++..++.+.+ .|++++++++++| ++|.-.... ....... ...+.-...+++++++.=+... ....
T Consensus 122 la~lhf~~t~~~~~~L~~-~G~~~~rI~~vG~~~~D~l~~~~-~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~ 199 (346)
T PF02350_consen 122 LAHLHFAPTEEARERLLQ-EGEPPERIFVVGNPGIDALLQNK-EEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERL 199 (346)
T ss_dssp H-SEEEESSHHHHHHHHH-TT--GGGEEE---HHHHHHHHHH-HTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--H
T ss_pred hhhhhccCCHHHHHHHHh-cCCCCCeEEEEChHHHHHHHHhH-HHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHH
Confidence 377889999999999999 7999999999998 455431111 1111111 1111002344366655533322 2345
Q ss_pred HHHHHHHHHhHhhccCCCCCeEEEEEeC--CCch----hHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCC
Q 011355 309 PLMFEALKQLLAENDTFRRSTVFLVAGD--GPWG----ARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLD 382 (488)
Q Consensus 309 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~--g~~~----~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~ 382 (488)
..+.++++.+.+. +++.+++... .... +.++++ ++|.+...++..++..+++.|+++|.-| |
T Consensus 200 ~~i~~~l~~L~~~-----~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~~a~~vvgdS------s 267 (346)
T PF02350_consen 200 EQILEALKALAER-----QNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLKNADLVVGDS------S 267 (346)
T ss_dssp HHHHHHHHHHHHH-----TTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHHHHESEEEESS------H
T ss_pred HHHHHHHHHHHhc-----CCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHHhcceEEEEcC------c
Confidence 6777777777765 3677776664 2222 334445 6999999999999999999999999744 3
Q ss_pred hHHH-HHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHH
Q 011355 383 HTVL-EAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAA 461 (488)
Q Consensus 383 ~~~l-EAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 461 (488)
.+. ||..+|+|+|.-+..+-+.+.+..+.+-+ +..|.+++.++|.+++.+ .+.+..+.. ...-|.-.+.++
T Consensus 268 -GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v~~~~~~I~~ai~~~l~~-~~~~~~~~~-----~~npYgdG~as~ 339 (346)
T PF02350_consen 268 -GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-VGTDPEAIIQAIEKALSD-KDFYRKLKN-----RPNPYGDGNASE 339 (346)
T ss_dssp -HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-ETSSHHHHHHHHHHHHH--HHHHHHHHC-----S--TT-SS-HHH
T ss_pred -cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-eCCCHHHHHHHHHHHHhC-hHHHHhhcc-----CCCCCCCCcHHH
Confidence 355 99999999999866565546666666555 766999999999999987 555444322 112344445555
Q ss_pred HHHHHH
Q 011355 462 AYERLF 467 (488)
Q Consensus 462 ~~~~~~ 467 (488)
++.+++
T Consensus 340 rI~~~L 345 (346)
T PF02350_consen 340 RIVEIL 345 (346)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555544
No 117
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.19 E-value=2.8e-09 Score=98.67 Aligned_cols=253 Identities=17% Similarity=0.106 Sum_probs=142.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC---CCCCceEEEecCCCCccCcchhHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFP---TYPISSLYFHLSKPTAAGYLDQSIVWQQ 154 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 154 (488)
||+|.+...+. ...|.-.++..|+++|.++|++|.+++......... ..+.+.+.+.... . ...-...
T Consensus 1 ~i~ir~Da~~~--iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~----~---~~~d~~~ 71 (279)
T TIGR03590 1 KILFRADASSE--IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDES----S---RYDDALE 71 (279)
T ss_pred CEEEEecCCcc--ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCC----c---hhhhHHH
Confidence 57788776543 456777889999999999999999999876442111 1223222221111 0 1112222
Q ss_pred HHHHhcCCCCCcEEEeCCcchH----HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 011355 155 LQTQNSTGKPFDVIHTESVGLR----HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVK 230 (488)
Q Consensus 155 ~~~~~~~~~~~Dvv~~~~~~~~----~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (488)
+....... +||+|++.++.+. ...+...+ .+..+-+... +
T Consensus 72 ~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~-~l~~iDD~~~----------------------------------~ 115 (279)
T TIGR03590 72 LINLLEEE-KFDILIVDHYGLDADWEKLIKEFGR-KILVIDDLAD----------------------------------R 115 (279)
T ss_pred HHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCC-eEEEEecCCC----------------------------------C
Confidence 33333333 8999999875422 11212233 3444444210 0
Q ss_pred hcCCccEEEEcChhhHHHHHHHhc-CCCCcEEEecCCccCCCcCCCcccchhhhhhh--CCC-CCCcEEEEEEeeecccc
Q 011355 231 FFPKYAHHVATSDHCGDVLKRIYM-IPEERVHVILNGVDEEVFKPDVAMGKDFKKKF--GIP-ENRSLVLGMAGRLVKDK 306 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~~~g-~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~--~i~-~~~~~~i~~~Grl~~~K 306 (488)
-..+|.++..+.. .+... +.+ +++...... |.+-.... .++.+.. ... ++.+.++++.|..++.+
T Consensus 116 -~~~~D~vin~~~~-~~~~~-y~~~~~~~~~~l~--G~~Y~~lr------~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~ 184 (279)
T TIGR03590 116 -PHDCDLLLDQNLG-ADASD-YQGLVPANCRLLL--GPSYALLR------EEFYQLATANKRRKPLRRVLVSFGGADPDN 184 (279)
T ss_pred -CcCCCEEEeCCCC-cCHhH-hcccCcCCCeEEe--cchHHhhh------HHHHHhhHhhhcccccCeEEEEeCCcCCcC
Confidence 0146777776654 33222 223 344444443 43221111 1111100 000 11225677889888877
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEE-EEEeCC-CchhHHhh---hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVF-LVAGDG-PWGARYRD---LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGL 381 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l-~ivG~g-~~~~~~~~---l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~ 381 (488)
....+++++.++. +++++ +++|.+ +..+.+++ ...+|.+.++ .+++.++|+.||++|.+.
T Consensus 185 ~~~~~l~~l~~~~-------~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~--~~~m~~lm~~aDl~Is~~------ 249 (279)
T TIGR03590 185 LTLKLLSALAESQ-------INISITLVTGSSNPNLDELKKFAKEYPNIILFID--VENMAELMNEADLAIGAA------ 249 (279)
T ss_pred HHHHHHHHHhccc-------cCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeC--HHHHHHHHHHCCEEEECC------
Confidence 6677788877653 23332 367765 34444443 2368999999 459999999999999732
Q ss_pred ChHHHHHHHcCCcEEEeCCC
Q 011355 382 DHTVLEAMLSGKPLMATRLA 401 (488)
Q Consensus 382 ~~~~lEAma~G~PVI~~~~~ 401 (488)
|.++.|++++|+|+|+....
T Consensus 250 G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 250 GSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred chHHHHHHHcCCCEEEEEec
Confidence 47999999999999987653
No 118
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.18 E-value=5.6e-09 Score=97.57 Aligned_cols=295 Identities=14% Similarity=0.122 Sum_probs=165.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCCCccC-cchhHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKPTAAG-YLDQSIVWQ 153 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~-~~~~~~~~~ 153 (488)
|||.+-..+- ..-.+..++++.|.++||+|.+.+...+...... .+.+.+.+-.......+ .........
T Consensus 1 MkIwiDi~~p-------~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHP-------AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCc-------hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 7888877532 2367888999999999999999998764322111 34444333222211100 011111112
Q ss_pred HHHHHhcCCCCCcEEEeCCc-chH-HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 154 QLQTQNSTGKPFDVIHTESV-GLR-HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~~~-~~~-~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
++.+...+. +||++++... ... .....++| .+.....-.. ... .+ -.
T Consensus 74 ~l~~~~~~~-~pDv~is~~s~~a~~va~~lgiP-~I~f~D~e~a---------------------~~~---~~-----Lt 122 (335)
T PF04007_consen 74 KLLKLIKKF-KPDVAISFGSPEAARVAFGLGIP-SIVFNDTEHA---------------------IAQ---NR-----LT 122 (335)
T ss_pred HHHHHHHhh-CCCEEEecCcHHHHHHHHHhCCC-eEEEecCchh---------------------hcc---ce-----ee
Confidence 222223333 8999998753 333 44555667 5554443100 000 00 23
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccc-----c
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKD-----K 306 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~-----K 306 (488)
+..+|.++++.-.-.+.+.+ +|.. +++ .-+||++...+-..-.....+.+++|++++. ++++ |..+. +
T Consensus 123 ~Pla~~i~~P~~~~~~~~~~-~G~~-~~i-~~y~G~~E~ayl~~F~Pd~~vl~~lg~~~~~-yIvv---R~~~~~A~y~~ 195 (335)
T PF04007_consen 123 LPLADVIITPEAIPKEFLKR-FGAK-NQI-RTYNGYKELAYLHPFKPDPEVLKELGLDDEP-YIVV---RPEAWKASYDN 195 (335)
T ss_pred hhcCCeeECCcccCHHHHHh-cCCc-CCE-EEECCeeeEEeecCCCCChhHHHHcCCCCCC-EEEE---EeccccCeeec
Confidence 45678888877665565555 7754 332 2278887643222223336788899977544 5554 33321 2
Q ss_pred Ch-HHHHHHHHHhHhhccCCCCCeEEEEEeCCCchh-HHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 307 GH-PLMFEALKQLLAENDTFRRSTVFLVAGDGPWGA-RYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 307 g~-~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~-~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
|. ..+-+.+..+.+.. +. ++++.+.+... ..++.. +.+... .-+..+++.-||++|. +| |..
T Consensus 196 ~~~~i~~~ii~~L~~~~-----~~-vV~ipr~~~~~~~~~~~~--~~i~~~--~vd~~~Ll~~a~l~Ig-----~g-gTM 259 (335)
T PF04007_consen 196 GKKSILPEIIEELEKYG-----RN-VVIIPRYEDQRELFEKYG--VIIPPE--PVDGLDLLYYADLVIG-----GG-GTM 259 (335)
T ss_pred CccchHHHHHHHHHhhC-----ce-EEEecCCcchhhHHhccC--ccccCC--CCCHHHHHHhcCEEEe-----CC-cHH
Confidence 22 23446666666544 33 66666554433 333332 544443 2355689999999995 33 678
Q ss_pred HHHHHHcCCcEEEeCCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 385 VLEAMLSGKPLMATRLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
..||...|+|+|++..|... ++.+. +.|+++.. |++++.+.+.+....
T Consensus 260 a~EAA~LGtPaIs~~~g~~~~vd~~L~--~~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 260 AREAALLGTPAISCFPGKLLAVDKYLI--EKGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred HHHHHHhCCCEEEecCCcchhHHHHHH--HCCCeEecCCHHHHHHHHHHhhhc
Confidence 99999999999987543221 12332 34677776 999998866665443
No 119
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=2.1e-09 Score=99.18 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=131.1
Q ss_pred CCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecc--ccChHH
Q 011355 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVK--DKGHPL 310 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~--~Kg~~~ 310 (488)
+.+|+++++=++..+.+.+ +|++ ++.|+|+.-... +...++...|++++++.+.+.+.+..|+-.. .+..+.
T Consensus 135 ~~~D~lLailPFE~~~y~k-~g~~---~~yVGHpl~d~i--~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~ 208 (381)
T COG0763 135 KYVDHLLAILPFEPAFYDK-FGLP---CTYVGHPLADEI--PLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPP 208 (381)
T ss_pred HHhhHeeeecCCCHHHHHh-cCCC---eEEeCChhhhhc--cccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHH
Confidence 4578889999999999988 7764 677777653221 1223346699999999999888888886533 366788
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh--hCCcE-EEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHH
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD--LGTNV-IVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLE 387 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~--l~~~V-~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lE 387 (488)
+.+++..+.++. |+.++++--..+..+..+. +...+ ...-.+...+-.+.+.+||+.+..| |.+.+|
T Consensus 209 f~~a~~~l~~~~----~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS------GT~tLE 278 (381)
T COG0763 209 FVQAAQELKARY----PDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS------GTATLE 278 (381)
T ss_pred HHHHHHHHHhhC----CCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc------cHHHHH
Confidence 899999999898 9999998876554333332 21111 0111222447788999999988755 679999
Q ss_pred HHHcCCcEEEe-CC----------------CCcccceeecCCceeEeC-----C-CHHHHHHHHHHHHhcCHHHHHHHHH
Q 011355 388 AMLSGKPLMAT-RL----------------ASIVGSVIVGTDMGYLFS-----P-QVESVKKALYGIWADGREVLEKKGL 444 (488)
Q Consensus 388 Ama~G~PVI~~-~~----------------~~~~~e~v~~~~~g~l~~-----~-d~~~la~~i~~ll~~~~~~~~~~~~ 444 (488)
++.+|+|.|++ .. -+.+ .++.+. .+++ . .++.+++++..++.| .+.++.+.+
T Consensus 279 ~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLp-NIi~~~---~ivPEliq~~~~pe~la~~l~~ll~~-~~~~~~~~~ 353 (381)
T COG0763 279 AALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLP-NILAGR---EIVPELIQEDCTPENLARALEELLLN-GDRREALKE 353 (381)
T ss_pred HHHhCCCEEEEEeccHHHHHHHHHhccCCcccch-HHhcCC---ccchHHHhhhcCHHHHHHHHHHHhcC-hHhHHHHHH
Confidence 99999999986 22 2222 222221 1222 2 599999999999999 555555544
Q ss_pred HH
Q 011355 445 VA 446 (488)
Q Consensus 445 ~a 446 (488)
..
T Consensus 354 ~~ 355 (381)
T COG0763 354 KF 355 (381)
T ss_pred HH
Confidence 43
No 120
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.17 E-value=1.4e-09 Score=104.85 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=121.6
Q ss_pred hhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch-hHHhh----h---CCcEE
Q 011355 280 KDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG-ARYRD----L---GTNVI 351 (488)
Q Consensus 280 ~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~-~~~~~----l---~~~V~ 351 (488)
...|+.+|+|++. ++++++.++ .|=.+..++++.++.+.. |+.+|++...+... +.+++ . .+++.
T Consensus 273 ~~~R~~~gLp~d~-vvF~~fn~~--~KI~p~~l~~W~~IL~~v----P~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~ 345 (468)
T PF13844_consen 273 VTTRAQYGLPEDA-VVFGSFNNL--FKISPETLDLWARILKAV----PNSRLWLLRFPASGEARLRRRFAAHGVDPDRII 345 (468)
T ss_dssp EEETGGGT--SSS-EEEEE-S-G--GG--HHHHHHHHHHHHHS----TTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEE
T ss_pred ccCHHHcCCCCCc-eEEEecCcc--ccCCHHHHHHHHHHHHhC----CCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEE
Confidence 3568899999988 777776654 677788999999999999 99999887654322 22222 2 27899
Q ss_pred EeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccc----eeec-CCceeEeCCCHHHHHH
Q 011355 352 VLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGS----VIVG-TDMGYLFSPQVESVKK 426 (488)
Q Consensus 352 ~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e----~v~~-~~~g~l~~~d~~~la~ 426 (488)
|.+..+.++....|..+|+++-+..+ +-+.+.+||+.+|+|||+-.-....+. ++.. |-..++.. |.++..+
T Consensus 346 f~~~~~~~ehl~~~~~~DI~LDT~p~--nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~-s~~eYv~ 422 (468)
T PF13844_consen 346 FSPVAPREEHLRRYQLADICLDTFPY--NGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD-SEEEYVE 422 (468)
T ss_dssp EEE---HHHHHHHGGG-SEEE--SSS----SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S-SHHHHHH
T ss_pred EcCCCCHHHHHHHhhhCCEEeeCCCC--CCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC-CHHHHHH
Confidence 99998888888899999999997643 447899999999999998764444321 1111 22233444 8999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hhCCHHHHHHHHHHHHHHh
Q 011355 427 ALYGIWADGREVLEKKGLVARKRGL--NLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 427 ~i~~ll~~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~~~~~ 470 (488)
...++.+| ++.++.++++-++... .-|+....++.+++.|+.+
T Consensus 423 ~Av~La~D-~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 423 IAVRLATD-PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 99999999 9999999998887664 3489999999999999864
No 121
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.13 E-value=1.7e-08 Score=92.69 Aligned_cols=332 Identities=14% Similarity=0.026 Sum_probs=202.0
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCC-c-eEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEE
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPI-S-SLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVI 168 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~-~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 168 (488)
..+|...+..-+.++|...||+++.+-..+.......... + .-....... . -....+.... ..++|+|
T Consensus 12 y~~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k~rd~~~~~~~~~~~~~~-------~-~e~~~~~~i~--~fk~d~i 81 (373)
T COG4641 12 YNNGSAEYYRGLLRALKMDGMKVLFLESGDFWDYKNRDIDAEDGCTEAFYKD-------Q-PELESLLYIR--EFKPDII 81 (373)
T ss_pred hcCCchhhHHHHHHHHHhccceEEEEecccHHhhhcccccCccchhheeecC-------c-HHHHHHHHHH--hcCCcEE
Confidence 4567777888999999999999999988764332221111 1 000011110 0 0111111111 1289999
Q ss_pred EeCCc----------chHHhhhc-cCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccE
Q 011355 169 HTESV----------GLRHTRAR-NLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAH 237 (488)
Q Consensus 169 ~~~~~----------~~~~~~~~-~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 237 (488)
+.... .++.|+.. .+| ++.+.-+.++.......+ ....+. .+.+.-.|.
T Consensus 82 v~~~~~~~~~~~~~~~~~a~l~~~~l~-~~~w~te~p~~~~~~~~~--------------~~~~~~-----~~~l~~fd~ 141 (373)
T COG4641 82 VNMSGDDQPDEESTIDLWAWLKRKCLP-VIVWYTEDPYDTDIFSQV--------------AEEQLA-----RRPLFIFDN 141 (373)
T ss_pred EEecccccccceehHHHHHHhhcCCcc-eEEEEeccchhhhhhhhh--------------hHHHhh-----ccccchhhh
Confidence 87531 23444443 345 566665554433221111 111111 012233344
Q ss_pred EEEcChhh-HHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHH
Q 011355 238 HVATSDHC-GDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALK 316 (488)
Q Consensus 238 ii~~S~~~-~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~ 316 (488)
|++.++.. ++.+.+..+ ..+...++.++|.+.+.+.+.+. ...--+.++|+..+. ..+.+-+.+.
T Consensus 142 v~~~g~~l~~~~yyq~~~--~~~~~~~~~a~d~~~~~~i~~da-----------~~~~dL~~ign~~pD-r~e~~ke~~~ 207 (373)
T COG4641 142 VLSFGGGLVANKYYQEGG--ARNCYYLPWAVDDSLFHPIPPDA-----------SYDVDLNLIGNPYPD-RVEEIKEFFV 207 (373)
T ss_pred hhhccchHHHHHHHHhhc--ccceeccCccCCchhcccCCccc-----------cceeeeEEecCCCcc-HHHHHHHHhh
Confidence 56666665 555554333 46788899999998887755321 111357788876655 1233333332
Q ss_pred HhHhhccCCCCCeEEEEEeCCCchhHHhh-hCCcEEEeCccCH-HHHHHHHHhcCEEEeCCCC--CCC---CChHHHHHH
Q 011355 317 QLLAENDTFRRSTVFLVAGDGPWGARYRD-LGTNVIVLGPLDQ-TRLAMFYNAIDIFVNPTLR--AQG---LDHTVLEAM 389 (488)
Q Consensus 317 ~l~~~~~~~~~~~~l~ivG~g~~~~~~~~-l~~~V~~~g~v~~-~~l~~~~~~adv~v~ps~~--~eg---~~~~~lEAm 389 (488)
.-..+. ..+-++.+.|..-....... ..+++...|+++. ..+...++..|+.+.-+.. .++ +.+-+.|++
T Consensus 208 ~ps~kl---~v~rr~~~~g~~y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeia 284 (373)
T COG4641 208 EPSFKL---MVDRRFYVLGPRYPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIA 284 (373)
T ss_pred ccchhh---hccceeeecCCccchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHh
Confidence 211111 01245556665411222222 3468888888766 8899999999998774431 222 278999999
Q ss_pred HcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 390 LSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 390 a~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
+||.|.|+....++. ..+.+|+.-.+.. |..++.+.+..++.. ++.++++++.+++.+...|+.+.-+..+.+....
T Consensus 285 gc~~~liT~~~~~~e-~~f~pgk~~iv~~-d~kdl~~~~~yll~h-~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~s 361 (373)
T COG4641 285 GCGGFLITDYWKDLE-KFFKPGKDIIVYQ-DSKDLKEKLKYLLNH-PDERKEIAECAYERVLARHTYEERIFKLLNEIAS 361 (373)
T ss_pred hcCCccccccHHHHH-HhcCCchheEEec-CHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999888875 6777777766666 999999999999999 8999999999999999999999999888888776
Q ss_pred hhc
Q 011355 470 ISN 472 (488)
Q Consensus 470 ~~~ 472 (488)
+..
T Consensus 362 I~~ 364 (373)
T COG4641 362 INI 364 (373)
T ss_pred HHH
Confidence 443
No 122
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.06 E-value=7.6e-08 Score=91.50 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=78.9
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEe
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 373 (488)
.++++.|. .+...+++++.++ +++.+++ |..... ...+.+++.+.++.+ +++.++|..||++|.
T Consensus 190 ~iLv~~g~----~~~~~l~~~l~~~--------~~~~~i~-~~~~~~--~~~~~~~v~~~~~~~-~~~~~~l~~ad~vI~ 253 (321)
T TIGR00661 190 YILVYIGF----EYRYKILELLGKI--------ANVKFVC-YSYEVA--KNSYNENVEIRRITT-DNFKELIKNAELVIT 253 (321)
T ss_pred cEEEECCc----CCHHHHHHHHHhC--------CCeEEEE-eCCCCC--ccccCCCEEEEECCh-HHHHHHHHhCCEEEE
Confidence 56666554 2445567766544 5655443 432211 124567999999865 789999999999998
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEEeCCCCccc-----ceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 374 PTLRAQGLDHTVLEAMLSGKPLMATRLASIVG-----SVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 374 ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~-----e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
-+ |+ .++.||+++|+|+|.....+..+ ..+.+.+.|..++. +. ++.+++...+++
T Consensus 254 ~~----G~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 254 HG----GF-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNM 314 (321)
T ss_pred CC----Ch-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhcccc
Confidence 33 32 47999999999999998876442 23566677888876 55 555555555544
No 123
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.02 E-value=1.3e-08 Score=85.99 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=103.1
Q ss_pred EEEEEec-CCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCCCccCcchhH----H
Q 011355 78 KIALFVK-KWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKPTAAGYLDQS----I 150 (488)
Q Consensus 78 kIl~i~~-~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~----~ 150 (488)
||+++.. ..|. ..||.|+++.+|+..|+++|++|+|+|.......... .+...++++..... ...... .
T Consensus 3 kIaIiGtrGIPa--~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g--~~~si~yd~~s 78 (185)
T PF09314_consen 3 KIAIIGTRGIPA--RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNG--SAESIIYDFLS 78 (185)
T ss_pred eEEEEeCCCCCc--ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCC--chHHHHHHHHH
Confidence 7899966 4665 8999999999999999999999999998764432222 33333444332221 111111 1
Q ss_pred HHHHHHHHhcCCCCCcEEEeCCcc---hH-Hhhh----ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 151 VWQQLQTQNSTGKPFDVIHTESVG---LR-HTRA----RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 151 ~~~~~~~~~~~~~~~Dvv~~~~~~---~~-~~~~----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
....+........+.|+++++... +. .+.. .+.+ ++...||..+.- .++ ..+.++.
T Consensus 79 l~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~-v~vN~DGlEWkR--------------~KW-~~~~k~~ 142 (185)
T PF09314_consen 79 LLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGK-VVVNMDGLEWKR--------------AKW-GRPAKKY 142 (185)
T ss_pred HHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCc-EEECCCcchhhh--------------hhc-CHHHHHH
Confidence 222221111111268899987643 11 1221 1235 888888864421 112 1222333
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCcc
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVD 268 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd 268 (488)
.++.+ .-..+.+|.+|+-|+...+++.+.|+ ..++.+|++|.|
T Consensus 143 lk~~E-~~avk~ad~lIaDs~~I~~y~~~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 143 LKFSE-KLAVKYADRLIADSKGIQDYIKERYG--RKKSTFIAYGAD 185 (185)
T ss_pred HHHHH-HHHHHhCCEEEEcCHHHHHHHHHHcC--CCCcEEecCCCC
Confidence 33322 23568899999999999999999996 467899999976
No 124
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=99.01 E-value=5.9e-08 Score=94.30 Aligned_cols=307 Identities=15% Similarity=0.189 Sum_probs=149.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHH--HCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALA--KRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVW 152 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~--~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 152 (488)
++-+|++.+.. +...++-.. .+.+.|. ..++++.+++..... .....+..+.... .+
T Consensus 12 ~~~~Ivf~~~~---g~~~~dN~~---~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~-----------s~ 70 (369)
T PF04464_consen 12 KKKKIVFESES---GNKFSDNPK---ALFEYLIKNYPDYKIYWIINKKSP----ELKPKGIKVVKFG-----------SL 70 (369)
T ss_dssp EEEEEEEEBTT---TTBS-HHHH---HHHHHHHHH-TTSEEEEEESSGGG--------SS-EEEETT-----------SH
T ss_pred cCCEEEEEECC---CCCCCCCHH---HHHHHHHhhCCCcEEEEEEcCchH----hhccCCceEEeec-----------HH
Confidence 44466666642 223444444 4555665 336778777766433 1111112221111 12
Q ss_pred HHHHHHhcCCCCCcEEEeCCcch---HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHh
Q 011355 153 QQLQTQNSTGKPFDVIHTESVGL---RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEV 229 (488)
Q Consensus 153 ~~~~~~~~~~~~~Dvv~~~~~~~---~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
+.+.... ..+++++.+... ......+.. ++..+||.+......+... .. .. .. ...
T Consensus 71 ~~~~~~~----~Ak~~i~~~~~~~~~~~~~~~~~~-~i~lwHG~~~K~~g~~~~~----~~--~~-~~---------~~~ 129 (369)
T PF04464_consen 71 KHIYYLA----RAKYIISDSYFPDLIYFKKRKNQK-YIQLWHGIPLKKIGYDSPD----NK--NY-RK---------NYK 129 (369)
T ss_dssp HHHHHHH----HEEEEEESS---T--TS---TTSE-EEE--SS--SB--GGG-S---------TS--H---------HHH
T ss_pred HHHHHHH----hCcEEEECCCCCcccccccCCCcE-EEEecCCCcccccchhccc----cc--cc-hh---------hhh
Confidence 2222223 578888874222 222233333 8999999744321111100 00 00 00 111
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccCh-
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGH- 308 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~- 308 (488)
+.....|.+++.|+...+.+.+.++.+.+++.+.+.+=....+.........+++.++++.++ .+|+|+-++......
T Consensus 130 ~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~-k~ILyaPT~R~~~~~~ 208 (369)
T PF04464_consen 130 RNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDK-KVILYAPTWRDNSSNE 208 (369)
T ss_dssp HHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS--EEEEEE----GGG--G
T ss_pred hhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCC-cEEEEeeccccccccc
Confidence 345788999999999999999999998888877655422222333333356788899998888 578888776543322
Q ss_pred -----HHH--HHHHHHhHhhccCCCCCeEEEEEeCCCchhHH---hhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 309 -----PLM--FEALKQLLAENDTFRRSTVFLVAGDGPWGARY---RDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 309 -----~~l--l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~---~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
... .+.+..+. . +++.+++-.-....... ....++|.+... .+++.+++..||++|. .
T Consensus 209 ~~~~~~~~~~~~~l~~~~--~----~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~--~~~~~~ll~~aDiLIT---D- 276 (369)
T PF04464_consen 209 YFKFFFSDLDFEKLNFLL--K----NNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSD--NEDIYDLLAAADILIT---D- 276 (369)
T ss_dssp GSS----TT-HHHHHHHH--T----TTEEEEE--SHHHHTT----TT-TTTEEE-TT---S-HHHHHHT-SEEEE---S-
T ss_pred cccccccccCHHHHHHHh--C----CCcEEEEEeCchhhhchhhhhccCCcEEECCC--CCCHHHHHHhcCEEEE---e-
Confidence 112 23333222 2 67877776642222222 234578888776 5599999999999995 1
Q ss_pred CCCChHHHHHHHcCCcEEEe--CCCCccc--ce---eecCCceeEeCCCHHHHHHHHHHHHhcCHHHHH
Q 011355 379 QGLDHTVLEAMLSGKPLMAT--RLASIVG--SV---IVGTDMGYLFSPQVESVKKALYGIWADGREVLE 440 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~--~~~~~~~--e~---v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~ 440 (488)
++.++.|++.+++|||.. |...... .. ..+...|-.+. +.++|.++|..++++ ++...
T Consensus 277 --ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~-~~~eL~~~i~~~~~~-~~~~~ 341 (369)
T PF04464_consen 277 --YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY-NFEELIEAIENIIEN-PDEYK 341 (369)
T ss_dssp --S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES-SHHHHHHHHTTHHHH-HHHTH
T ss_pred --chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC-CHHHHHHHHHhhhhC-CHHHH
Confidence 355999999999999965 3211110 11 12334455665 899999999999887 54443
No 125
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.00 E-value=3.7e-08 Score=93.47 Aligned_cols=186 Identities=17% Similarity=0.215 Sum_probs=123.8
Q ss_pred CccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecc--ccChHHH
Q 011355 234 KYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVK--DKGHPLM 311 (488)
Q Consensus 234 ~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~--~Kg~~~l 311 (488)
.+|+++++=+...+.+.+ .|+ +++.++|+.-.. ..... .....++.+ ++++++.+.+..|+-.. .+....+
T Consensus 133 ~~D~ll~ifPFE~~~y~~-~g~---~~~~VGHPl~d~-~~~~~-~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~ 205 (373)
T PF02684_consen 133 YVDHLLVIFPFEPEFYKK-HGV---PVTYVGHPLLDE-VKPEP-DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIF 205 (373)
T ss_pred HHhheeECCcccHHHHhc-cCC---CeEEECCcchhh-hccCC-CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 357779999999999988 664 578888875222 22211 235566777 88888777788886533 3566899
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhH-Hhh----hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHH
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGAR-YRD----LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVL 386 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~-~~~----l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~l 386 (488)
++++..+.+++ |++++++.......+. +++ ...++.+.-. ..+-.+.+++||+.+..| |.+.+
T Consensus 206 l~aa~~l~~~~----p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~m~~ad~al~~S------GTaTL 273 (373)
T PF02684_consen 206 LEAAKLLKKQR----PDLQFVVPVAPEVHEELIEEILAEYPPDVSIVII--EGESYDAMAAADAALAAS------GTATL 273 (373)
T ss_pred HHHHHHHHHhC----CCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEc--CCchHHHHHhCcchhhcC------CHHHH
Confidence 99999999999 9999998876543332 222 2233333222 346778999999998766 67999
Q ss_pred HHHHcCCcEEEeC-CC----------------CcccceeecCC-ceeEeC-C-CHHHHHHHHHHHHhcCHHHHH
Q 011355 387 EAMLSGKPLMATR-LA----------------SIVGSVIVGTD-MGYLFS-P-QVESVKKALYGIWADGREVLE 440 (488)
Q Consensus 387 EAma~G~PVI~~~-~~----------------~~~~e~v~~~~-~g~l~~-~-d~~~la~~i~~ll~~~~~~~~ 440 (488)
|++.+|+|.|+.- .. +++ .++.+.+ ..-++. . +++.+++++..++.| ++.++
T Consensus 274 E~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~-Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~-~~~~~ 345 (373)
T PF02684_consen 274 EAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLP-NIIAGREVVPELIQEDATPENIAAELLELLEN-PEKRK 345 (373)
T ss_pred HHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeech-hhhcCCCcchhhhcccCCHHHHHHHHHHHhcC-HHHHH
Confidence 9999999998752 11 222 2222111 111222 3 799999999999998 55533
No 126
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.98 E-value=2.5e-08 Score=96.93 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=108.8
Q ss_pred CCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHh
Q 011355 288 IPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNA 367 (488)
Q Consensus 288 i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ 367 (488)
++.+++++.+..|+.... ..+++.+....... +.++++...+ .+..+..+..|+...+++++.+ ++..
T Consensus 233 ~~~d~~~vyvslGt~~~~---~~l~~~~~~a~~~l-----~~~vi~~~~~-~~~~~~~~p~n~~v~~~~p~~~---~l~~ 300 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA---VELLAIVLEALADL-----DVRVIVSLGG-ARDTLVNVPDNVIVADYVPQLE---LLPR 300 (406)
T ss_pred hcCCCCeEEEEcCCcccH---HHHHHHHHHHHhcC-----CcEEEEeccc-cccccccCCCceEEecCCCHHH---Hhhh
Confidence 455666777778877544 44454444444332 5666666644 3335667889999999998764 8899
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcc---cceeecCCceeEeC--C-CHHHHHHHHHHHHhcCHHHHHH
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIV---GSVIVGTDMGYLFS--P-QVESVKKALYGIWADGREVLEK 441 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~---~e~v~~~~~g~l~~--~-d~~~la~~i~~ll~~~~~~~~~ 441 (488)
||++|+.. |. .++.||+.+|+|+|+-..+.-. .+.+++-+.|.... . +.+.++++|++++.+ +..++.
T Consensus 301 ad~vI~hG----G~-gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~-~~~~~~ 374 (406)
T COG1819 301 ADAVIHHG----GA-GTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD-DSYRRA 374 (406)
T ss_pred cCEEEecC----Cc-chHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC-HHHHHH
Confidence 99999833 43 4899999999999998665311 13566778888877 4 899999999999998 544443
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 442 KGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 442 ~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
. ++..+...+.-..+++++.+++...
T Consensus 375 ~-~~~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 375 A-ERLAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred H-HHHHHHhhhcccHHHHHHHHHHHHh
Confidence 3 4444444443455555555555443
No 127
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.95 E-value=8.7e-07 Score=88.83 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=90.0
Q ss_pred cEEEEEEeeeccc-----cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHH--
Q 011355 293 SLVLGMAGRLVKD-----KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFY-- 365 (488)
Q Consensus 293 ~~~i~~~Grl~~~-----Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~-- 365 (488)
+.+++..|+.... +-...+++|++.+ + .++++...++... ..+.+||.+.+++|+.+ ++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l--------~-~~viw~~~~~~~~--~~~p~Nv~i~~w~Pq~~---lL~h 362 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL--------P-YNVLWKYDGEVEA--INLPANVLTQKWFPQRA---VLKH 362 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC--------C-CeEEEEECCCcCc--ccCCCceEEecCCCHHH---HhcC
Confidence 3777788886432 2234555555544 4 3555554433222 34678999999999764 55
Q ss_pred HhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHH
Q 011355 366 NAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVGTDMGYLFSP---QVESVKKALYGIWADGREVL 439 (488)
Q Consensus 366 ~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~ 439 (488)
..+++||. + .| ..++.||+.+|+|+|+....+-.. ..+++.+.|..++. +.+++.++|.+++++ ++.+
T Consensus 363 p~v~~fIt---H-GG-~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~-~~y~ 436 (507)
T PHA03392 363 KNVKAFVT---Q-GG-VQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIEN-PKYR 436 (507)
T ss_pred CCCCEEEe---c-CC-cccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCC-HHHH
Confidence 56888886 3 34 458999999999999976544110 23456677887764 789999999999998 6655
Q ss_pred HHHHHHHHH
Q 011355 440 EKKGLVARK 448 (488)
Q Consensus 440 ~~~~~~a~~ 448 (488)
++..+-+..
T Consensus 437 ~~a~~ls~~ 445 (507)
T PHA03392 437 KNLKELRHL 445 (507)
T ss_pred HHHHHHHHH
Confidence 544444333
No 128
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.87 E-value=8.7e-06 Score=79.41 Aligned_cols=323 Identities=11% Similarity=0.082 Sum_probs=166.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCC-CC--CceEEEecCCCC----------
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFPT-YP--ISSLYFHLSKPT---------- 141 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~-~~--~~~i~~~~~~~~---------- 141 (488)
|||+++.. | +...-|.+-.+..+++.|++. +.+++|++..+....... .. ......+.....
T Consensus 1 ~~i~i~G~-~--g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (426)
T PRK10017 1 MKLLILGN-H--TCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVK 77 (426)
T ss_pred CeEEEEcc-c--cCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHH
Confidence 78888874 3 346789999999999999988 578999988775433110 00 000000000000
Q ss_pred -----------------ccCc---chhHHHHHHHHHHhcCCCCCcEEEeCCcch----------H---HhhhccCCcEEE
Q 011355 142 -----------------AAGY---LDQSIVWQQLQTQNSTGKPFDVIHTESVGL----------R---HTRARNLTNVVV 188 (488)
Q Consensus 142 -----------------~~~~---~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~----------~---~~~~~~~p~~v~ 188 (488)
..+. ......+..+.+..+ +.|+++.-+..+ . .....+.| ++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkp-v~l 153 (426)
T PRK10017 78 KVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLS---GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKP-LYM 153 (426)
T ss_pred HHHHhhhhHHHHHhhhccccccccccchhhHHHHHHHHH---hCCEEEECCCCccccCcccHHHHHHHHHHHcCCC-EEE
Confidence 0000 011111222222221 789998864211 1 11112334 555
Q ss_pred eeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCcc
Q 011355 189 SWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVD 268 (488)
Q Consensus 189 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd 268 (488)
.-+++.+. .....+.+.+ ..++++|.|.+--+...+.+.+ .|++..++.+.+..+-
T Consensus 154 ~gqsiGPf------------------~~~~~r~l~r-----~vl~~~~~ItvRD~~S~~~Lk~-lGv~~~~v~~~aDpAF 209 (426)
T PRK10017 154 IGHSVGPF------------------QDEQFNQLAN-----YVFGHCDALILRESVSLDLMKR-SNITTAKVEHGVDTAW 209 (426)
T ss_pred ECCcCCCc------------------CCHHHHHHHH-----HHHhcCCEEEEccHHHHHHHHH-hCCCccceEEecChhh
Confidence 55554221 1222232322 4578999999999999999887 7998778888765431
Q ss_pred CCCcCCCc-ccchhhhhhhCCCCCCcEEEEEEeeeccc-c-------Ch-HHHHHHHHHhHhhccCCCCCeEEEEE--eC
Q 011355 269 EEVFKPDV-AMGKDFKKKFGIPENRSLVLGMAGRLVKD-K-------GH-PLMFEALKQLLAENDTFRRSTVFLVA--GD 336 (488)
Q Consensus 269 ~~~~~~~~-~~~~~~r~~~~i~~~~~~~i~~~Grl~~~-K-------g~-~~ll~a~~~l~~~~~~~~~~~~l~iv--G~ 336 (488)
.-...... .....+...++.+..++.+-+.+..+.+. + .. ..+.+++..+.+++ -++.|+-. |.
T Consensus 210 ~L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g----~~Vv~lp~~~~~ 285 (426)
T PRK10017 210 LVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEG----YQVIALSTCTGI 285 (426)
T ss_pred hCCccccccccchhhhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCC----CeEEEEecccCc
Confidence 11100000 00011112222223332333333433211 1 11 34456666665544 44444322 10
Q ss_pred ---CCchhH-Hhh----hC--CcEE-EeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc
Q 011355 337 ---GPWGAR-YRD----LG--TNVI-VLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG 405 (488)
Q Consensus 337 ---g~~~~~-~~~----l~--~~V~-~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~ 405 (488)
++.... .++ +. .+++ +.+..+..|+..++++||++|..-++ .++=|++.|+|+|+-....=..
T Consensus 286 ~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH------a~I~a~~~gvP~i~i~Y~~K~~ 359 (426)
T PRK10017 286 DSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH------SAIISMNFGTPAIAINYEHKSA 359 (426)
T ss_pred cCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch------HHHHHHHcCCCEEEeeehHHHH
Confidence 121111 122 22 2333 34445677899999999999985543 6788999999999975532111
Q ss_pred ceeec-CCceeEeC--C-CHHHHHHHHHHHHhcCHHHHHH
Q 011355 406 SVIVG-TDMGYLFS--P-QVESVKKALYGIWADGREVLEK 441 (488)
Q Consensus 406 e~v~~-~~~g~l~~--~-d~~~la~~i~~ll~~~~~~~~~ 441 (488)
.++.+ +...++++ . +.+++.+.+.+++++ .+.+++
T Consensus 360 ~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~-r~~~~~ 398 (426)
T PRK10017 360 GIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ-LPALNA 398 (426)
T ss_pred HHHHHcCCccEEechhhCCHHHHHHHHHHHHhC-HHHHHH
Confidence 22221 12223333 3 688999999999999 544443
No 129
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.86 E-value=5.1e-07 Score=89.53 Aligned_cols=314 Identities=12% Similarity=0.085 Sum_probs=171.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC--C--CCCceEEEecCCCCccCcchhHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFP--T--YPISSLYFHLSKPTAAGYLDQSIVW 152 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~~~~~~~ 152 (488)
-||.+++. ..+| ..+...|+++|+++.-++.+...+.+.-... + .....+.+.....-........+..
T Consensus 227 ~kIfI~AG------E~SG-DlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~ 299 (608)
T PRK01021 227 TSCFISAG------EHSG-DTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRY 299 (608)
T ss_pred CeEEEEec------cccH-HHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHH
Confidence 48888875 4445 4566799999999877788776654321110 0 1111111110000001122233344
Q ss_pred HHHHHHhcCCCCCcEEEeCC-cchHHhhh-----ccC--CcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHH
Q 011355 153 QQLQTQNSTGKPFDVIHTES-VGLRHTRA-----RNL--TNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASK 224 (488)
Q Consensus 153 ~~~~~~~~~~~~~Dvv~~~~-~~~~~~~~-----~~~--p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (488)
+++.+...+. +||++++-+ +++...++ .++ | +++.+- +. .+.+ . ..-.+.+.
T Consensus 300 ~~l~~~i~~~-kPD~vIlID~PgFNlrLAK~lkk~Gi~ip-viyYVs---Pq-----VWAW----R-----~~Rikki~- 359 (608)
T PRK01021 300 RKLYKTILKT-NPRTVICIDFPDFHFLLIKKLRKRGYKGK-IVHYVC---PS-----IWAW----R-----PKRKTILE- 359 (608)
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCCHHHHHHHHhcCCCCC-EEEEEC---cc-----ceee----C-----cchHHHHH-
Confidence 4444444444 899999854 33322222 221 3 332221 11 1100 0 11112222
Q ss_pred HHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecc
Q 011355 225 VVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVK 304 (488)
Q Consensus 225 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~ 304 (488)
+.+|+++|+=+...+.+++ +|+ +++.++|+.-.. ... ..++.+.++++|++++++.+.+..|+-..
T Consensus 360 --------k~vD~ll~IfPFE~~~y~~-~gv---~v~yVGHPL~d~-i~~-~~~~~~~r~~lgl~~~~~iIaLLPGSR~~ 425 (608)
T PRK01021 360 --------KYLDLLLLILPFEQNLFKD-SPL---RTVYLGHPLVET-ISS-FSPNLSWKEQLHLPSDKPIVAAFPGSRRG 425 (608)
T ss_pred --------HHhhhheecCccCHHHHHh-cCC---CeEEECCcHHhh-ccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHH
Confidence 3457779999999999988 665 467888876222 211 22335679999998777677778886432
Q ss_pred --ccChHHHHHHHH--HhHhhccCCCCCeEEEEEeCCCc-hhHHhhhC-----CcEEEeCccCHHHHHHHHHhcCEEEeC
Q 011355 305 --DKGHPLMFEALK--QLLAENDTFRRSTVFLVAGDGPW-GARYRDLG-----TNVIVLGPLDQTRLAMFYNAIDIFVNP 374 (488)
Q Consensus 305 --~Kg~~~ll~a~~--~l~~~~~~~~~~~~l~ivG~g~~-~~~~~~l~-----~~V~~~g~v~~~~l~~~~~~adv~v~p 374 (488)
.+..+.+++|++ .+. ++.++++....+. .+.+++.- ..+.+... ++-.+++++||+.+..
T Consensus 426 EI~rllPv~l~aa~~~~l~-------~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~---~~~~~~m~aaD~aLaa 495 (608)
T PRK01021 426 DILRNLTIQVQAFLASSLA-------STHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPS---QFRYELMRECDCALAK 495 (608)
T ss_pred HHHHHHHHHHHHHHHHHhc-------cCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecC---cchHHHHHhcCeeeec
Confidence 366778888887 443 4567766543332 23333321 12333321 1236999999999986
Q ss_pred CCCCCCCChHHHHHHHcCCcEEEe-CCCCccc-----------------ceeecCC-ceeEe---CC-CHHHHHHHHHHH
Q 011355 375 TLRAQGLDHTVLEAMLSGKPLMAT-RLASIVG-----------------SVIVGTD-MGYLF---SP-QVESVKKALYGI 431 (488)
Q Consensus 375 s~~~eg~~~~~lEAma~G~PVI~~-~~~~~~~-----------------e~v~~~~-~g~l~---~~-d~~~la~~i~~l 431 (488)
| |.+.+|++.+|+|.|+. ..+...- .++.+.+ .--++ +. +++.+++++ ++
T Consensus 496 S------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~l 568 (608)
T PRK01021 496 C------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DI 568 (608)
T ss_pred C------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HH
Confidence 6 67999999999999885 2221110 1111111 11123 23 799999996 88
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 011355 432 WADGREVLEKKGLVARKR 449 (488)
Q Consensus 432 l~~~~~~~~~~~~~a~~~ 449 (488)
+.| ++.++++.+...+.
T Consensus 569 L~d-~~~r~~~~~~l~~l 585 (608)
T PRK01021 569 LKT-SQSKEKQKDACRDL 585 (608)
T ss_pred hcC-HHHHHHHHHHHHHH
Confidence 887 66666665554433
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.71 E-value=4.7e-07 Score=74.62 Aligned_cols=132 Identities=20% Similarity=0.137 Sum_probs=76.2
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQT 157 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 157 (488)
||++++... +.++.++++.|.++||||++++........ ....++.+................ ..+.+
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~--~~~~~i~~~~~~~~~k~~~~~~~~-~~l~k 68 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYEKY--EIIEGIKVIRLPSPRKSPLNYIKY-FRLRK 68 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCchhh--hHhCCeEEEEecCCCCccHHHHHH-HHHHH
Confidence 688888622 457889999999999999999996543222 112233332222112123444433 35555
Q ss_pred HhcCCCCCcEEEeCCcc---hHHhhh---cc-CCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 011355 158 QNSTGKPFDVIHTESVG---LRHTRA---RN-LTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVK 230 (488)
Q Consensus 158 ~~~~~~~~Dvv~~~~~~---~~~~~~---~~-~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (488)
..++. +||+||+|... +.+.++ .+ .| ++++.||.... . .+ .. ..+.+.+.+ .
T Consensus 69 ~ik~~-~~DvIh~h~~~~~~~~~~l~~~~~~~~~-~i~~~hg~~~~-~----------~~--~~-~~~~~~~~~-----~ 127 (139)
T PF13477_consen 69 IIKKE-KPDVIHCHTPSPYGLFAMLAKKLLKNKK-VIYTVHGSDFY-N----------SS--KK-KKLKKFIIK-----F 127 (139)
T ss_pred HhccC-CCCEEEEecCChHHHHHHHHHHHcCCCC-EEEEecCCeee-c----------CC--ch-HHHHHHHHH-----H
Confidence 55555 89999999743 222222 23 45 99999985331 1 00 00 112333333 4
Q ss_pred hcCCccEEEEcC
Q 011355 231 FFPKYAHHVATS 242 (488)
Q Consensus 231 ~~~~~d~ii~~S 242 (488)
+++++|.+++.|
T Consensus 128 ~~k~~~~ii~~~ 139 (139)
T PF13477_consen 128 AFKRADKIIVQS 139 (139)
T ss_pred HHHhCCEEEEcC
Confidence 567899999876
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.70 E-value=8.8e-06 Score=72.79 Aligned_cols=292 Identities=14% Similarity=0.125 Sum_probs=162.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--CCCceEEEecCCCCccCcc-hhHHHH-
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT--YPISSLYFHLSKPTAAGYL-DQSIVW- 152 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~-~~~~~~- 152 (488)
|||.|-..+-| .-++..++...|.++||+|.+.|...+...... .+.+...+ .+....... ......
T Consensus 1 mkVwiDI~n~~-------hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~I--gk~g~~tl~~Kl~~~~e 71 (346)
T COG1817 1 MKVWIDIGNPP-------HVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSI--GKHGGVTLKEKLLESAE 71 (346)
T ss_pred CeEEEEcCCcc-------hhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEee--cccCCccHHHHHHHHHH
Confidence 57666654322 257889999999999999999998765443322 23322222 121100111 111111
Q ss_pred --HHHHHHhcCCCCCcEEEe-CCcchHHh-hhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHH
Q 011355 153 --QQLQTQNSTGKPFDVIHT-ESVGLRHT-RARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEE 228 (488)
Q Consensus 153 --~~~~~~~~~~~~~Dvv~~-~~~~~~~~-~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (488)
..+.+...+. +||+.+. |++.++.. ...++| .+.....- |. ....+
T Consensus 72 R~~~L~ki~~~~-kpdv~i~~~s~~l~rvafgLg~p-sIi~~D~e-----hA----------------~~qnk------- 121 (346)
T COG1817 72 RVYKLSKIIAEF-KPDVAIGKHSPELPRVAFGLGIP-SIIFVDNE-----HA----------------EAQNK------- 121 (346)
T ss_pred HHHHHHHHHhhc-CCceEeecCCcchhhHHhhcCCc-eEEecCCh-----hH----------------HHHhh-------
Confidence 2223333344 8999886 45544433 233445 33332210 00 11111
Q ss_pred hhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccC----CCcCCCcccchhhhhhhCCCCCCcEEEEEEee---
Q 011355 229 VKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDE----EVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR--- 301 (488)
Q Consensus 229 ~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~----~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr--- 301 (488)
..+.-|+.++.++....+.+.+ +|-++.++. -+||+-. ..|.++ .++-+++|+..+.+++++=.-.
T Consensus 122 -l~~Pla~~ii~P~~~~~~~~~~-~G~~p~~i~-~~~giae~~~v~~f~pd----~evlkeLgl~~~~~yIVmRpe~~~A 194 (346)
T COG1817 122 -LTLPLADVIITPEAIDEEELLD-FGADPNKIS-GYNGIAELANVYGFVPD----PEVLKELGLEEGETYIVMRPEPWGA 194 (346)
T ss_pred -cchhhhhheecccccchHHHHH-hCCCcccee-cccceeEEeecccCCCC----HHHHHHcCCCCCCceEEEeeccccc
Confidence 2345567778887777777766 787766654 3456432 224333 5678899999876565542222
Q ss_pred --eccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc-hhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 302 --LVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW-GARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 302 --l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~-~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
...+++++.+.+++..+.+ .-.+++.+... ++..+... +++....+ -+-.+++-.|++++.
T Consensus 195 ~y~~g~~~~~~~~~li~~l~k--------~giV~ipr~~~~~eife~~~-n~i~pk~~--vD~l~Llyya~lvig----- 258 (346)
T COG1817 195 HYDNGDRGISVLPDLIKELKK--------YGIVLIPREKEQAEIFEGYR-NIIIPKKA--VDTLSLLYYATLVIG----- 258 (346)
T ss_pred eeeccccchhhHHHHHHHHHh--------CcEEEecCchhHHHHHhhhc-cccCCccc--ccHHHHHhhhheeec-----
Confidence 1335666677777777754 22566665433 33333332 33222221 133346777888874
Q ss_pred CCCChHHHHHHHcCCcEEEeCCC---CcccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLA---SIVGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~---~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
+| |...-||...|+|.|++.-| +.. +.. -+.|.++.. |+.+..+...+.+.+
T Consensus 259 ~g-gTMarEaAlLGtpaIs~~pGkll~vd-k~l--ie~G~~~~s~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 259 AG-GTMAREAALLGTPAISCYPGKLLAVD-KYL--IEKGLLYHSTDEIAIVEYAVRNLKY 314 (346)
T ss_pred CC-chHHHHHHHhCCceEEecCCcccccc-HHH--HhcCceeecCCHHHHHHHHHHHhhc
Confidence 33 66889999999999998733 122 222 156788886 888777777777766
No 132
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.66 E-value=0.00012 Score=72.94 Aligned_cols=202 Identities=16% Similarity=0.072 Sum_probs=105.1
Q ss_pred hcCCccEEEEcChh-hHHHHHHHhcC-CCCcEEEecCCccCCCcC---C---CcccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 231 FFPKYAHHVATSDH-CGDVLKRIYMI-PEERVHVILNGVDEEVFK---P---DVAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 231 ~~~~~d~ii~~S~~-~~~~~~~~~g~-~~~~i~vi~ngvd~~~~~---~---~~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
...+++.|++.|-+ ....+.+.+.- -..++..|..-+...... . ......++.+-+.-.+.++.+.+..|+.
T Consensus 205 ~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~ 284 (459)
T PLN02448 205 WVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSF 284 (459)
T ss_pred hcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeeccc
Confidence 35678899998876 32232332310 012455555433211100 0 0000012333333333444777788886
Q ss_pred ccc--cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh-hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCC
Q 011355 303 VKD--KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD-LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQ 379 (488)
Q Consensus 303 ~~~--Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~-l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~e 379 (488)
... +-+..++++++.. +..++++..++. ..+.+ ..+++.+.+++|+.+ ++...++..+-++ -
T Consensus 285 ~~~~~~~~~~~~~~l~~~---------~~~~lw~~~~~~-~~~~~~~~~~~~v~~w~pQ~~---iL~h~~v~~fvtH--g 349 (459)
T PLN02448 285 LSVSSAQMDEIAAGLRDS---------GVRFLWVARGEA-SRLKEICGDMGLVVPWCDQLK---VLCHSSVGGFWTH--C 349 (459)
T ss_pred ccCCHHHHHHHHHHHHhC---------CCCEEEEEcCch-hhHhHhccCCEEEeccCCHHH---HhccCccceEEec--C
Confidence 432 2233344444332 345555544331 12323 336788889999776 4556666333342 3
Q ss_pred CCChHHHHHHHcCCcEEEeCCCCccc---ceeecC-CceeEeC-------C-CHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011355 380 GLDHTVLEAMLSGKPLMATRLASIVG---SVIVGT-DMGYLFS-------P-QVESVKKALYGIWADGREVLEKKGLVAR 447 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~-~~g~l~~-------~-d~~~la~~i~~ll~~~~~~~~~~~~~a~ 447 (488)
| -++++||+++|+|+|+-...+-.. ..+.+. +.|+-+. . +.+++++++.+++.++.++-++|++++.
T Consensus 350 G-~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~ 428 (459)
T PLN02448 350 G-WNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAK 428 (459)
T ss_pred c-hhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4 458999999999999976543110 223332 3455542 2 7899999999999862233444444444
Q ss_pred H
Q 011355 448 K 448 (488)
Q Consensus 448 ~ 448 (488)
+
T Consensus 429 ~ 429 (459)
T PLN02448 429 E 429 (459)
T ss_pred H
Confidence 3
No 133
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.64 E-value=7.1e-06 Score=74.65 Aligned_cols=316 Identities=17% Similarity=0.143 Sum_probs=168.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCC-CCCceEEEecCCCCccCcc-----
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFPT-YPISSLYFHLSKPTAAGYL----- 146 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~----- 146 (488)
+.|||++-+.+ ...=|.-+.+..++++|.+. |.+|.+++.......... .++..+.++.......+.+
T Consensus 8 ~~~Ri~~Yshd----~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~ 83 (400)
T COG4671 8 KRPRILFYSHD----LLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDL 83 (400)
T ss_pred ccceEEEEehh----hccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeec
Confidence 45699999862 23447778889999999998 999999998876555544 5555555553322111111
Q ss_pred -----hhHHHHHHHHHHhcCCCCCcEEEeCCcc----------hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCC
Q 011355 147 -----DQSIVWQQLQTQNSTGKPFDVIHTESVG----------LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPE 211 (488)
Q Consensus 147 -----~~~~~~~~~~~~~~~~~~~Dvv~~~~~~----------~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~ 211 (488)
.......+++....+..+||++++.... +....... ++.+.-+.++ .+.++.. ..
T Consensus 84 ~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~-t~~vL~lr~i------~D~p~~~---~~ 153 (400)
T COG4671 84 DGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTG-TRLVLGLRSI------RDIPQEL---EA 153 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcC-CcceeehHhh------hhchhhh---cc
Confidence 1111112222222222399999998632 11222222 2233333222 1111111 00
Q ss_pred ChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCC-cEEEecCCccCCCcCCCcccchhhhhhhCCCC
Q 011355 212 EPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEE-RVHVILNGVDEEVFKPDVAMGKDFKKKFGIPE 290 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~-~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~ 290 (488)
..........+. +.+|.|.+..+-.-..+.+-|++.+. +-.+.+.|+=....+..+....+ + ++
T Consensus 154 ~w~~~~~~~~I~---------r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~~~-----~-pE 218 (400)
T COG4671 154 DWRRAETVRLIN---------RFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPPHE-----A-PE 218 (400)
T ss_pred chhhhHHHHHHH---------HhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCCcC-----C-Cc
Confidence 001112222333 34678888776655555555654321 23344444421111111100000 0 23
Q ss_pred CCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeE---EEEEeCC-Cc--hhHHhhhC---CcEEEeCccCHHHH
Q 011355 291 NRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTV---FLVAGDG-PW--GARYRDLG---TNVIVLGPLDQTRL 361 (488)
Q Consensus 291 ~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~---l~ivG~g-~~--~~~~~~l~---~~V~~~g~v~~~~l 361 (488)
+. .+++.+|. ..-|-+++..+++. .... +++. ++|.|.- |. .+.+...+ ++|.+..+ .+++
T Consensus 219 ~~-~Ilvs~GG--G~dG~eLi~~~l~A-~~~l----~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f--~~~~ 288 (400)
T COG4671 219 GF-DILVSVGG--GADGAELIETALAA-AQLL----AGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEF--RNDF 288 (400)
T ss_pred cc-eEEEecCC--ChhhHHHHHHHHHH-hhhC----CCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEh--hhhH
Confidence 33 67778773 34554444433333 2222 3333 4555632 21 22333322 78999999 7799
Q ss_pred HHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceee-------cCCceeEeCC--CHHHHHHHHHHHH
Q 011355 362 AMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIV-------GTDMGYLFSP--QVESVKKALYGIW 432 (488)
Q Consensus 362 ~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~-------~~~~g~l~~~--d~~~la~~i~~ll 432 (488)
..++..|+..|.-+ |+ +++.|-+++|||.+.-....-.+|... =|-...+.+. +++.|+++|...+
T Consensus 289 ~~ll~gA~~vVSm~----GY-NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l 363 (400)
T COG4671 289 ESLLAGARLVVSMG----GY-NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAAL 363 (400)
T ss_pred HHHHHhhheeeecc----cc-hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcc
Confidence 99999999999633 43 589999999999988766554433221 1223444444 7899999999988
Q ss_pred hc
Q 011355 433 AD 434 (488)
Q Consensus 433 ~~ 434 (488)
+.
T Consensus 364 ~~ 365 (400)
T COG4671 364 AR 365 (400)
T ss_pred cC
Confidence 84
No 134
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=2.9e-06 Score=74.68 Aligned_cols=286 Identities=15% Similarity=0.156 Sum_probs=144.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
|||+|++...+. ...|.-.+...|+++|.+.|..+..++.+........ ........... .. +
T Consensus 1 M~V~i~~Dgg~~--iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~-~~~~f~~~~~~----~~-n--------- 63 (318)
T COG3980 1 MKVLIRCDGGLE--IGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHK-VYEGFKVLEGR----GN-N--------- 63 (318)
T ss_pred CcEEEEecCCcc--cCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhh-hhhhccceeee----cc-c---------
Confidence 899999987754 5667778899999999999988888887653221100 00011111000 00 0
Q ss_pred HHhcCCCCCcEEEeCCcchHHhhhccC----CcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhc
Q 011355 157 TQNSTGKPFDVIHTESVGLRHTRARNL----TNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFF 232 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~~~~~~~~~----p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (488)
..+.. ++|++++.++++..=..+.+ ...+..+.+... +.+.
T Consensus 64 -~ik~~-k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~--------------------~~~~------------- 108 (318)
T COG3980 64 -LIKEE-KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENA--------------------KSFK------------- 108 (318)
T ss_pred -ccccc-cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCc--------------------cchh-------------
Confidence 12222 89999999876543332221 112233322110 0000
Q ss_pred CCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHH
Q 011355 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMF 312 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll 312 (488)
..| ..++.... .. ++|+.-+.+..+ .-|.+.....+. -...|++.-..+.+ -+++..|.- ..||+ .+
T Consensus 109 -d~d--~ivN~~~~-a~-~~y~~v~~k~~~-~lGp~y~~lr~e---F~~~r~~~~~r~~r-~ilI~lGGs-Dpk~l--t~ 175 (318)
T COG3980 109 -DND--LIVNAILN-AN-DYYGLVPNKTRY-YLGPGYAPLRPE---FYALREENTERPKR-DILITLGGS-DPKNL--TL 175 (318)
T ss_pred -hhH--hhhhhhhc-ch-hhccccCcceEE-EecCCceeccHH---HHHhHHHHhhcchh-eEEEEccCC-Chhhh--HH
Confidence 001 11111111 11 224544445433 234332222111 11222222111122 245566643 44555 77
Q ss_pred HHHHHhHhhccCCCCCeEEEEEeCC-CchhHHhh---hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHH
Q 011355 313 EALKQLLAENDTFRRSTVFLVAGDG-PWGARYRD---LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEA 388 (488)
Q Consensus 313 ~a~~~l~~~~~~~~~~~~l~ivG~g-~~~~~~~~---l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEA 388 (488)
+.++.+.+.. -++++ ++|++ |....+.+ ..+++.+.-. .+++.+++..||..|.. + |.++.||
T Consensus 176 kvl~~L~~~~----~nl~i-V~gs~~p~l~~l~k~~~~~~~i~~~~~--~~dma~LMke~d~aI~A-----a-GstlyEa 242 (318)
T COG3980 176 KVLAELEQKN----VNLHI-VVGSSNPTLKNLRKRAEKYPNINLYID--TNDMAELMKEADLAISA-----A-GSTLYEA 242 (318)
T ss_pred HHHHHhhccC----eeEEE-EecCCCcchhHHHHHHhhCCCeeeEec--chhHHHHHHhcchheec-----c-chHHHHH
Confidence 8888887643 23333 34533 33333332 3478877766 67999999999999862 2 6799999
Q ss_pred HHcCCcEEEe----CCCCcccceee----cCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHH
Q 011355 389 MLSGKPLMAT----RLASIVGSVIV----GTDMGYLFSPQVESVKKALYGIWADGREVLEKKGL 444 (488)
Q Consensus 389 ma~G~PVI~~----~~~~~~~e~v~----~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~ 444 (488)
+..|+|.++- +--... ..+. ..+.|+-. ..+.....+.++.+| ...+..+..
T Consensus 243 ~~lgvP~l~l~~a~NQ~~~a-~~f~~lg~~~~l~~~l--~~~~~~~~~~~i~~d-~~~rk~l~~ 302 (318)
T COG3980 243 LLLGVPSLVLPLAENQIATA-KEFEALGIIKQLGYHL--KDLAKDYEILQIQKD-YARRKNLSF 302 (318)
T ss_pred HHhcCCceEEeeeccHHHHH-HHHHhcCchhhccCCC--chHHHHHHHHHhhhC-HHHhhhhhh
Confidence 9999994332 211111 1111 11223222 356666777777777 666655543
No 135
>PLN03007 UDP-glucosyltransferase family protein
Probab=98.43 E-value=0.0028 Score=63.61 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=78.1
Q ss_pred hhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc--------hhHHhh--hCCcEE
Q 011355 282 FKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW--------GARYRD--LGTNVI 351 (488)
Q Consensus 282 ~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~--------~~~~~~--l~~~V~ 351 (488)
+.+-+.-.++++.+.+..|+.... ..+.+.+.+..+.... -++- ..++.... .+.+.+ ...++.
T Consensus 275 ~~~wLd~~~~~svvyvsfGS~~~~-~~~~~~~~~~~l~~~~----~~fl-w~~~~~~~~~~~~~~lp~~~~~r~~~~g~~ 348 (482)
T PLN03007 275 CLKWLDSKKPDSVIYLSFGSVASF-KNEQLFEIAAGLEGSG----QNFI-WVVRKNENQGEKEEWLPEGFEERTKGKGLI 348 (482)
T ss_pred HHHHHhcCCCCceEEEeecCCcCC-CHHHHHHHHHHHHHCC----CCEE-EEEecCCcccchhhcCCHHHHHHhccCCEE
Confidence 344444334445778888887432 1223444444443322 2333 33443110 111111 246889
Q ss_pred EeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeec-CCceeEe----------
Q 011355 352 VLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVG-TDMGYLF---------- 417 (488)
Q Consensus 352 ~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~-~~~g~l~---------- 417 (488)
+.+++|+. ++|+.+++-.+-++ -| -++++||+.+|+|+|+-...+-.. ..+.+ -+.|+-+
T Consensus 349 v~~w~PQ~---~iL~h~~v~~fvtH--~G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~ 422 (482)
T PLN03007 349 IRGWAPQV---LILDHQATGGFVTH--CG-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKG 422 (482)
T ss_pred EecCCCHH---HHhccCccceeeec--Cc-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccccc
Confidence 99999975 56777777444343 34 358999999999999976533110 11111 1223322
Q ss_pred CC-CHHHHHHHHHHHHhc
Q 011355 418 SP-QVESVKKALYGIWAD 434 (488)
Q Consensus 418 ~~-d~~~la~~i~~ll~~ 434 (488)
+. +.+++++++.+++.+
T Consensus 423 ~~~~~~~l~~av~~~m~~ 440 (482)
T PLN03007 423 DFISREKVEKAVREVIVG 440 (482)
T ss_pred CcccHHHHHHHHHHHhcC
Confidence 22 789999999999987
No 136
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.39 E-value=0.00011 Score=66.45 Aligned_cols=208 Identities=14% Similarity=0.164 Sum_probs=121.4
Q ss_pred hcCCccEEEEcChhhHHHH-HHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEee-eccccCh
Q 011355 231 FFPKYAHHVATSDHCGDVL-KRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR-LVKDKGH 308 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~-~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr-l~~~Kg~ 308 (488)
..++..++++ +......+ ++.++++.+ ....|.-.+... .....++ .+.++++| .+|+ -++..++
T Consensus 95 aq~rvg~v~a-trGD~~~~a~~~~~v~~~-llyfpt~m~~~l-~~~~~~~---------~~~~~~tI-lvGNSgd~SN~H 161 (322)
T PRK02797 95 AQKRVGHVFA-TRGDLSYFAQRHPKVPGS-LLYFPTRMDPSL-NTMANDR---------QRAGKMTI-LVGNSGDRSNRH 161 (322)
T ss_pred HHhhcCeEEE-ecchHHHHHHhcCCCCcc-EEecCCcchhhh-ccccccc---------cCCCceEE-EEeCCCCCcccH
Confidence 3467888899 66666764 455666543 322222222211 1111000 12233666 4565 4667777
Q ss_pred HHHHHHHHHhHhhccCCCCCeEEEEE-eC--CC--chhHHhh-----hC-CcEEE-eCccCHHHHHHHHHhcCEEEeCCC
Q 011355 309 PLMFEALKQLLAENDTFRRSTVFLVA-GD--GP--WGARYRD-----LG-TNVIV-LGPLDQTRLAMFYNAIDIFVNPTL 376 (488)
Q Consensus 309 ~~ll~a~~~l~~~~~~~~~~~~l~iv-G~--g~--~~~~~~~-----l~-~~V~~-~g~v~~~~l~~~~~~adv~v~ps~ 376 (488)
-.+++++++... .++++++- |- |. +.++.++ .+ +++.. ..+++-+|..++++.||+.++.-.
T Consensus 162 ie~L~~l~~~~~------~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~ 235 (322)
T PRK02797 162 IEALRALHQQFG------DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFA 235 (322)
T ss_pred HHHHHHHHHHhC------CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeec
Confidence 666666655533 57777654 33 22 1222222 23 56665 468899999999999999888766
Q ss_pred CCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 011355 377 RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKKGLVARKRGLNL 453 (488)
Q Consensus 377 ~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~ 453 (488)
+-+|+| +++=.+..|+||+.+.....-.++.+ .+.-++++. |...+.+ ..+++...-++.+.
T Consensus 236 RQQgiG-nl~lLi~~G~~v~l~r~n~fwqdl~e-~gv~Vlf~~d~L~~~~v~e-----------~~rql~~~dk~~I~-- 300 (322)
T PRK02797 236 RQQGIG-TLCLLIQLGKPVVLSRDNPFWQDLTE-QGLPVLFTGDDLDEDIVRE-----------AQRQLASVDKNIIA-- 300 (322)
T ss_pred hhhHHh-HHHHHHHCCCcEEEecCCchHHHHHh-CCCeEEecCCcccHHHHHH-----------HHHHHHhhCcceee--
Confidence 668988 56669999999998854443324433 333344443 3333322 22333344444443
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 011355 454 FTATKMAAAYERLFLCISN 472 (488)
Q Consensus 454 fs~~~~~~~~~~~~~~~~~ 472 (488)
|+.++..+.+.+++....+
T Consensus 301 Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 301 FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred ecCHhHHHHHHHHHHHhhC
Confidence 9999999999999987665
No 137
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.35 E-value=3.1e-06 Score=80.01 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=76.2
Q ss_pred ccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecc--ccChHHHH
Q 011355 235 YAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVK--DKGHPLMF 312 (488)
Q Consensus 235 ~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~--~Kg~~~ll 312 (488)
+|++.+.=+...+.+ |+ ++.+++|++-.. .... ++. ++++ +.+.++.|+-.. .+....++
T Consensus 128 ~d~vl~ifPFE~~~y----g~---~~~~VGhPl~d~-~~~~-------~~~--~~~~-~~I~llPGSR~~Ei~~llP~~~ 189 (347)
T PRK14089 128 CDFLASILPFEVQFY----QS---KATYVGHPLLDE-IKEF-------KKD--LDKE-GTIAFMPGSRKSEIKRLMPIFK 189 (347)
T ss_pred HhhhhccCCCCHHHh----CC---CCEEECCcHHHh-hhhh-------hhh--cCCC-CEEEEECCCCHHHHHHHHHHHH
Confidence 344455545544443 43 456888875322 1111 111 2223 366667776532 25566777
Q ss_pred HHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh-hC--CcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHH
Q 011355 313 EALKQLLAENDTFRRSTVFLVAGDGPWGARYRD-LG--TNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAM 389 (488)
Q Consensus 313 ~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~-l~--~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAm 389 (488)
+++.++.++ ...+++.|.... +.+++ .. ..+.+.+ +..++|+.||+.+..| |.+.+|++
T Consensus 190 ~aa~~L~~~------~~~~~i~~a~~~-~~i~~~~~~~~~~~~~~-----~~~~~m~~aDlal~~S------GT~TLE~a 251 (347)
T PRK14089 190 ELAKKLEGK------EKILVVPSFFKG-KDLKEIYGDISEFEISY-----DTHKALLEAEFAFICS------GTATLEAA 251 (347)
T ss_pred HHHHHHhhc------CcEEEEeCCCcH-HHHHHHHhcCCCcEEec-----cHHHHHHhhhHHHhcC------cHHHHHHH
Confidence 888888753 257777776443 33333 21 2444442 4568999999999755 55777999
Q ss_pred HcCCcEEEe
Q 011355 390 LSGKPLMAT 398 (488)
Q Consensus 390 a~G~PVI~~ 398 (488)
.+|+|.|..
T Consensus 252 l~g~P~Vv~ 260 (347)
T PRK14089 252 LIGTPFVLA 260 (347)
T ss_pred HhCCCEEEE
Confidence 999999985
No 138
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=6.4e-06 Score=76.74 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=143.6
Q ss_pred HHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCccc---------------chhhhhhhCC
Q 011355 224 KVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAM---------------GKDFKKKFGI 288 (488)
Q Consensus 224 ~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~---------------~~~~r~~~~i 288 (488)
+..-+......|+.+.++|+-++-.....+. .+.=.+.|||.+...|....+- +..+.-.+++
T Consensus 242 rYC~ERaa~h~AhVFTTVSeITa~EAeHlLk--RKPD~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGHF~GhlDF 319 (692)
T KOG3742|consen 242 RYCLERAAAHTAHVFTTVSEITALEAEHLLK--RKPDVITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGHFHGHLDF 319 (692)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh--cCCCeeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 3333444556777778888766544443332 2334688999998877543221 1112223445
Q ss_pred CCCCcEEEEEEeeec-cccChHHHHHHHHHhHhhc---cCCCCC--eEEEEEeCCC------------chhHHhh-----
Q 011355 289 PENRSLVLGMAGRLV-KDKGHPLMFEALKQLLAEN---DTFRRS--TVFLVAGDGP------------WGARYRD----- 345 (488)
Q Consensus 289 ~~~~~~~i~~~Grl~-~~Kg~~~ll~a~~~l~~~~---~~~~~~--~~l~ivG~g~------------~~~~~~~----- 345 (488)
.-++.+.+..+||.+ ..||-+.+|+++++|.-.. .. +. +-|.|..... ....+.+
T Consensus 320 dLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s--~~TVVaFlImPaktN~FnVesLkgqAv~kqL~dtv~~V 397 (692)
T KOG3742|consen 320 DLDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGS--PKTVVAFLIMPAKTNSFNVESLKGQAVRKQLWDTVNEV 397 (692)
T ss_pred cccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCC--CceEEEEEEeecCCCccchhhhccHHHHHHHHHHHHHH
Confidence 556668888999986 5799999999999875311 00 11 2334443210 0000000
Q ss_pred ------------------------------------------------------------h------------CCc--EE
Q 011355 346 ------------------------------------------------------------L------------GTN--VI 351 (488)
Q Consensus 346 ------------------------------------------------------------l------------~~~--V~ 351 (488)
| .++ |+
T Consensus 398 k~~~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN~~~DRVKvi 477 (692)
T KOG3742|consen 398 KEKVGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFNSPSDRVKVI 477 (692)
T ss_pred HHHHHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhcccCcccceEEE
Confidence 0 122 44
Q ss_pred EeC-cc------CHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCc---ccceeecC-CceeEe-C-
Q 011355 352 VLG-PL------DQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASI---VGSVIVGT-DMGYLF-S- 418 (488)
Q Consensus 352 ~~g-~v------~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~---~~e~v~~~-~~g~l~-~- 418 (488)
|.+ ++ =.-+..++.+.|++.|+||++ |.+|.+..|.-.+|+|-|+|+..|. .+|.+.+. ..|+.+ +
T Consensus 478 fHPEFLss~sPllglDYeeFVRGCHLGVFPSYY-EPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDR 556 (692)
T KOG3742|consen 478 FHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSYY-EPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDR 556 (692)
T ss_pred ecHHHhccCCCCcCCCHHHHhcccccccccccc-CCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEec
Confidence 543 11 123567889999999999985 9999999999999999999987764 23555443 345433 2
Q ss_pred ----C--CHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHhhhCCHHHHHHHHHH
Q 011355 419 ----P--QVESVKKALYGIWADGREVLEKKGL-VARKRGLNLFTATKMAAAYER 465 (488)
Q Consensus 419 ----~--d~~~la~~i~~ll~~~~~~~~~~~~-~a~~~~~~~fs~~~~~~~~~~ 465 (488)
+ ++++|++-+.++... ..++++-+ |--++..+..+|+.+..-|.+
T Consensus 557 Rfks~deSv~qL~~~m~~F~~q--sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~ 608 (692)
T KOG3742|consen 557 RFKSPDESVQQLASFMYEFCKQ--SRRQRIIQRNRTERLSDLLDWKYLGRYYRK 608 (692)
T ss_pred ccCChhhHHHHHHHHHHHHHHH--HHHHHHHHhcchhhHHHHHhHHHHhHHHHH
Confidence 2 578888888888876 44455444 344566677789887766543
No 139
>PLN02208 glycosyltransferase family protein
Probab=98.32 E-value=0.0045 Score=61.12 Aligned_cols=204 Identities=11% Similarity=0.024 Sum_probs=110.6
Q ss_pred hcCCccEEEEcChhhHH-HHHHHhcCC-CCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccCh
Q 011355 231 FFPKYAHHVATSDHCGD-VLKRIYMIP-EERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGH 308 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~-~~~~~~g~~-~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~ 308 (488)
.+.++|.+++.|-...+ .+.+.+.-+ ..++..|..-..... .......++.+-++-.+++..+.+.+|+... -..
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~--~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~-l~~ 266 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD--TSKPLEEQWSHFLSGFPPKSVVFCSLGSQII-LEK 266 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC--CCCCCHHHHHHHHhcCCCCcEEEEecccccc-CCH
Confidence 45689999998854433 333333211 135555554321110 0011123445555544444577888888753 233
Q ss_pred HHHHHHHHHhHhhccCCCCCeEEEEEeC-C--Cchh----HHhh--hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCC
Q 011355 309 PLMFEALKQLLAENDTFRRSTVFLVAGD-G--PWGA----RYRD--LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQ 379 (488)
Q Consensus 309 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~-g--~~~~----~~~~--l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~e 379 (488)
+.+.+.+..+.... -+..+++--. + .... .+.+ .+.++.+.+|+|+.+ +++...+..+-++ -
T Consensus 267 ~q~~e~~~~l~~s~----~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~---iL~H~~v~~FvtH--c 337 (442)
T PLN02208 267 DQFQELCLGMELTG----LPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPL---ILDHPSIGCFVNH--C 337 (442)
T ss_pred HHHHHHHHHHHhCC----CcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHH---HhcCCccCeEEcc--C
Confidence 44666655552222 2343444311 1 1111 1111 136888889999775 5667776555453 3
Q ss_pred CCChHHHHHHHcCCcEEEeCCCC----cccceeec-CCceeEeC------CCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011355 380 GLDHTVLEAMLSGKPLMATRLAS----IVGSVIVG-TDMGYLFS------PQVESVKKALYGIWADGREVLEKKGLVARK 448 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~-~~~g~l~~------~d~~~la~~i~~ll~~~~~~~~~~~~~a~~ 448 (488)
|+ ++++||+++|+|+|+-..-+ .. ..+.+ -+.|..++ .+.++++++|.++++++.+..+++.+++++
T Consensus 338 G~-nS~~Eai~~GVP~l~~P~~~DQ~~na-~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 338 GP-GTIWESLVSDCQMVLIPFLSDQVLFT-RLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred Cc-hHHHHHHHcCCCEEecCcchhhHHHH-HHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 43 58999999999999975433 11 22222 35566553 167899999999998732444555555443
No 140
>PLN02210 UDP-glucosyl transferase
Probab=98.30 E-value=0.0053 Score=61.04 Aligned_cols=139 Identities=15% Similarity=0.144 Sum_probs=79.3
Q ss_pred hhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC---chhHHhhh--CCcEEEeCccCH
Q 011355 284 KKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP---WGARYRDL--GTNVIVLGPLDQ 358 (488)
Q Consensus 284 ~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~---~~~~~~~l--~~~V~~~g~v~~ 358 (488)
+-++-.++++.+.+..|+.... ..+.+-+.+..+.... -.+-+ +++... ..+.+++. .++..+.+++|+
T Consensus 261 ~wld~~~~~svvyvsfGS~~~~-~~~~~~e~a~~l~~~~----~~flw-~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ 334 (456)
T PLN02210 261 EWLDKQARSSVVYISFGSMLES-LENQVETIAKALKNRG----VPFLW-VIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQ 334 (456)
T ss_pred HHHhCCCCCceEEEEecccccC-CHHHHHHHHHHHHhCC----CCEEE-EEeCCccccchhhHHhhccCCCeEEEecCCH
Confidence 3333333444777788887432 2233444444444322 22322 334211 11223232 255567799997
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcc---cceeec-CCceeEeC------C-CHHHHHHH
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIV---GSVIVG-TDMGYLFS------P-QVESVKKA 427 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~---~e~v~~-~~~g~l~~------~-d~~~la~~ 427 (488)
.+ +++.+.+..+-++ -|+ ++++||+.+|+|+|+-...+-. ...+.+ -+.|..+. . +.++++++
T Consensus 335 ~~---iL~h~~vg~FitH--~G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~a 408 (456)
T PLN02210 335 EK---ILSHMAISCFVTH--CGW-NSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERC 408 (456)
T ss_pred HH---HhcCcCcCeEEee--CCc-ccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHH
Confidence 64 6777775444343 354 4899999999999997654311 023333 46676663 2 78999999
Q ss_pred HHHHHhc
Q 011355 428 LYGIWAD 434 (488)
Q Consensus 428 i~~ll~~ 434 (488)
+.+++.+
T Consensus 409 v~~~m~~ 415 (456)
T PLN02210 409 IEAVTEG 415 (456)
T ss_pred HHHHhcC
Confidence 9999976
No 141
>PLN00414 glycosyltransferase family protein
Probab=98.23 E-value=0.0072 Score=59.82 Aligned_cols=209 Identities=11% Similarity=0.009 Sum_probs=113.1
Q ss_pred hhcCCccEEEEcChhhHH-HHHHHhcCC-CCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccC
Q 011355 230 KFFPKYAHHVATSDHCGD-VLKRIYMIP-EERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKG 307 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~-~~~~~~g~~-~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg 307 (488)
..+.+++.+++.|-...+ .+.+.+.-. ..++.-|..-+...............-+-++-.+.++.+.+.+|+.....
T Consensus 188 ~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~- 266 (446)
T PLN00414 188 KGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFE- 266 (446)
T ss_pred HhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCC-
Confidence 345778999998854333 333323110 12455555433211100001111234455555555557788888875432
Q ss_pred hHHHHHHHHHhHhhccCCCCCeEEEEEe---CCC----chhHHhh-h-CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 308 HPLMFEALKQLLAENDTFRRSTVFLVAG---DGP----WGARYRD-L-GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 308 ~~~ll~a~~~l~~~~~~~~~~~~l~ivG---~g~----~~~~~~~-l-~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
.+.+.+....|...+ -++-.++.. .+. ..+.+++ . +....+.|++|+.+ +++.+.+..+-++
T Consensus 267 ~~q~~e~a~gL~~s~----~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~---vL~h~~v~~fvtH-- 337 (446)
T PLN00414 267 KDQFQEFCLGMELTG----LPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPL---ILSHPSVGCFVNH-- 337 (446)
T ss_pred HHHHHHHHHHHHHcC----CCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHH---HhcCCccceEEec--
Confidence 345666666555544 344444432 111 1111111 1 24566779999775 5555644333232
Q ss_pred CCCChHHHHHHHcCCcEEEeCCCC----ccccee-ecCCceeEeC-----C-CHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLAS----IVGSVI-VGTDMGYLFS-----P-QVESVKKALYGIWADGREVLEKKGLVAR 447 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v-~~~~~g~l~~-----~-d~~~la~~i~~ll~~~~~~~~~~~~~a~ 447 (488)
-| -++++||+.+|+|+|+-...+ .. ..+ +.-+.|..+. . +.+++++++.+++.++.+..+++.++++
T Consensus 338 ~G-~nS~~Ea~~~GvP~l~~P~~~dQ~~na-~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~ 415 (446)
T PLN00414 338 CG-FGSMWESLVSDCQIVFIPQLADQVLIT-RLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHK 415 (446)
T ss_pred Cc-hhHHHHHHHcCCCEEecCcccchHHHH-HHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 34 358999999999999975433 11 223 2346666662 2 7899999999999874455555666655
Q ss_pred HHH
Q 011355 448 KRG 450 (488)
Q Consensus 448 ~~~ 450 (488)
+.-
T Consensus 416 ~~~ 418 (446)
T PLN00414 416 KLK 418 (446)
T ss_pred HHH
Confidence 443
No 142
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.20 E-value=0.0011 Score=60.99 Aligned_cols=206 Identities=15% Similarity=0.138 Sum_probs=119.1
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEee-eccccChHH
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR-LVKDKGHPL 310 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr-l~~~Kg~~~ 310 (488)
.++..+|++ .+.....+++.++..+.....-|..+|.......... ..++++.| .+|+ -++..++-.
T Consensus 135 q~rvg~V~a-t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~~----------~~~~~ltI-LvGNSgd~sNnHie 202 (360)
T PF07429_consen 135 QKRVGHVFA-TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKNK----------KNKGKLTI-LVGNSGDPSNNHIE 202 (360)
T ss_pred HhhcCeEEE-EcchHHHHHHHcCCCCceEEEcCCCCchhhhcccccc----------CCCCceEE-EEcCCCCCCccHHH
Confidence 355667765 6788889999886433344333434443221111110 11233666 4565 456677755
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEE-eCCC----chhHHhh----h-C-CcEEE-eCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVA-GDGP----WGARYRD----L-G-TNVIV-LGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~iv-G~g~----~~~~~~~----l-~-~~V~~-~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
+++++++.. . .++++++- |-|. +.+++.+ + + +++.. ..+++-+|..++++.||+.++...+.
T Consensus 203 aL~~L~~~~--~----~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQ 276 (360)
T PF07429_consen 203 ALEALKQQF--G----DDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQ 276 (360)
T ss_pred HHHHHHHhc--C----CCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechh
Confidence 555554422 2 46775543 3332 2222222 2 3 47765 56999999999999999999998887
Q ss_pred CCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeC--C-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCC
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFS--P-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFT 455 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~--~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs 455 (488)
+|.| +++=.+.+|+||+.+.....- ..+.+.+.-+++. . |...+.++=+++..-++ +.+ .|.
T Consensus 277 QgiG-nI~lLl~~G~~v~L~~~np~~-~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk-----------~~i--aFf 341 (360)
T PF07429_consen 277 QGIG-NICLLLQLGKKVFLSRDNPFW-QDLKEQGIPVLFYGDELDEALVREAQRQLANVDK-----------QQI--AFF 341 (360)
T ss_pred hhHh-HHHHHHHcCCeEEEecCChHH-HHHHhCCCeEEeccccCCHHHHHHHHHHHhhCcc-----------cce--eee
Confidence 8988 566699999999998766655 3334444334444 2 56666655555544311 111 155
Q ss_pred HHHHHHHHHHHHHHh
Q 011355 456 ATKMAAAYERLFLCI 470 (488)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (488)
.....+.+.+.+.-.
T Consensus 342 ~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 342 APNYLQGWRQALRLA 356 (360)
T ss_pred CCchHHHHHHHHHHH
Confidence 555666666655443
No 143
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=98.16 E-value=3.5e-07 Score=78.59 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=81.8
Q ss_pred ccccCCCCCCCCc-eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCCC-ceEEEecCC
Q 011355 64 NHLSFPSNPPLKL-LKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFPTYPI-SSLYFHLSK 139 (488)
Q Consensus 64 ~~~~~~~~~~~~~-mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~-~~i~~~~~~ 139 (488)
+|+++...+.+.+ -+.++++. .+-|.-..+..|++.|.++ |+.|.+.+.+..+........ +.+....
T Consensus 7 eR~g~~~~~~~~~~~~~iWiHa------~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~-- 78 (186)
T PF04413_consen 7 ERLGFYPPPPPRKPGPLIWIHA------ASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQY-- 78 (186)
T ss_dssp HHHS--GGGGGGT--T-EEEE-------SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE--
T ss_pred HhcCCCCCCCCCCCCCcEEEEE------CCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEE--
Confidence 6677653333221 16788886 6688889999999999987 888888887665443221111 1111111
Q ss_pred CCccCcchhHHHHHHHHHHhcCCCCCcEEEeCCcchH-----HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChh
Q 011355 140 PTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTESVGLR-----HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQ 214 (488)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~-----~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
..++.....+.+.... +||++++....++ .....++| ++..--.+. ..
T Consensus 79 ----~P~D~~~~~~rfl~~~----~P~~~i~~EtElWPnll~~a~~~~ip-~~LvNarls------------------~~ 131 (186)
T PF04413_consen 79 ----LPLDFPWAVRRFLDHW----RPDLLIWVETELWPNLLREAKRRGIP-VVLVNARLS------------------ER 131 (186)
T ss_dssp -------SSHHHHHHHHHHH------SEEEEES----HHHHHH-----S--EEEEEE-----------------------
T ss_pred ----eCccCHHHHHHHHHHh----CCCEEEEEccccCHHHHHHHhhcCCC-EEEEeeeec------------------cc
Confidence 2256677778888887 9999998765433 22234566 333222110 01
Q ss_pred HHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecC
Q 011355 215 AYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILN 265 (488)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~n 265 (488)
+...+.++..+.. ..++..|.|.+.|+..++.+.+ .|.+++++.|.+|
T Consensus 132 s~~~~~~~~~~~r--~~l~~f~~i~aqs~~da~r~~~-lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 132 SFRRYRRFPFLFR--PLLSRFDRILAQSEADAERFRK-LGAPPERVHVTGN 179 (186)
T ss_dssp ---------HHHH--HHGGG-SEEEESSHHHHHHHHT-TT-S--SEEE---
T ss_pred cchhhhhhHHHHH--HHHHhCCEEEECCHHHHHHHHH-cCCCcceEEEeCc
Confidence 1111222222222 4578899999999999999999 8999999999987
No 144
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=98.14 E-value=7.5e-07 Score=80.69 Aligned_cols=43 Identities=28% Similarity=0.457 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||++++..++|-...||....+..|.++|+++||+|.|+++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 7999999998878999999999999999999999999999875
No 145
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.98 E-value=0.022 Score=56.44 Aligned_cols=191 Identities=12% Similarity=0.014 Sum_probs=100.5
Q ss_pred cCCccEEEEcChhhHH-HHHHHhcC-CCCcEEEecCCccCCCcC-CCcccchhhhhhhCCCCCCcEEEEEEeeeccccCh
Q 011355 232 FPKYAHHVATSDHCGD-VLKRIYMI-PEERVHVILNGVDEEVFK-PDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGH 308 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~-~~~~~~g~-~~~~i~vi~ngvd~~~~~-~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~ 308 (488)
..++|.|++.|-...+ .+.+.+.- ...++..|..-....... .........-+-++-.+.++.+.+.+|+...- ..
T Consensus 201 ~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~-~~ 279 (451)
T PLN02410 201 KRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALM-EI 279 (451)
T ss_pred cccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccC-CH
Confidence 4689999998854433 22222311 112455554322110000 00111111223333333444788888887532 23
Q ss_pred HHHHHHHHHhHhhccCCCCCeEEEEEeCC----Cc-----h-hHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 309 PLMFEALKQLLAENDTFRRSTVFLVAGDG----PW-----G-ARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 309 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~g----~~-----~-~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
+.+.+.+.-|.... ..+- .++..+ .. . ...+...+|..+.+++|+.+ +++..++..+-++
T Consensus 280 ~q~~ela~gLe~s~----~~Fl-Wv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~---iL~h~~v~~fvtH-- 349 (451)
T PLN02410 280 NEVMETASGLDSSN----QQFL-WVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKE---VLSHPAVGGFWSH-- 349 (451)
T ss_pred HHHHHHHHHHHhcC----CCeE-EEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHH---HhCCCccCeeeec--
Confidence 34444444444332 2232 333321 11 1 12223557888889999876 5666555333232
Q ss_pred CCCChHHHHHHHcCCcEEEeCCCCccc---ceeecC-CceeEeCC--CHHHHHHHHHHHHhc
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLASIVG---SVIVGT-DMGYLFSP--QVESVKKALYGIWAD 434 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~-~~g~l~~~--d~~~la~~i~~ll~~ 434 (488)
-|+ ++++||+++|+|+|+-...+-.. ..+.+. +.|+-+.. +.++++++|.+++.+
T Consensus 350 ~G~-nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~ 410 (451)
T PLN02410 350 CGW-NSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVE 410 (451)
T ss_pred Cch-hHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcC
Confidence 354 58999999999999976543110 223333 57766643 899999999999977
No 146
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.97 E-value=6.4e-07 Score=76.39 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=69.3
Q ss_pred EEEEeCCCchhHHhh---hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc--
Q 011355 331 FLVAGDGPWGARYRD---LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG-- 405 (488)
Q Consensus 331 l~ivG~g~~~~~~~~---l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~-- 405 (488)
++++|.....+...+ ...+|.+.++.+ ++.++|+.||++|. + .| +.++.|++++|+|.|.-..++..+
T Consensus 35 iv~~G~~~~~~~~~~~~~~~~~v~~~~~~~--~m~~~m~~aDlvIs---~-aG-~~Ti~E~l~~g~P~I~ip~~~~~~~~ 107 (167)
T PF04101_consen 35 IVQTGKNNYEELKIKVENFNPNVKVFGFVD--NMAELMAAADLVIS---H-AG-AGTIAEALALGKPAIVIPLPGAADNH 107 (167)
T ss_dssp CCCCTTCECHHHCCCHCCTTCCCEEECSSS--SHHHHHHHHSEEEE---C-S--CHHHHHHHHCT--EEEE--TTT-T-C
T ss_pred EEEECCCcHHHHHHHHhccCCcEEEEechh--hHHHHHHHcCEEEe---C-CC-ccHHHHHHHcCCCeeccCCCCcchHH
Confidence 345565533332222 236899999966 89999999999996 3 23 579999999999999877666210
Q ss_pred -----ceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011355 406 -----SVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKKGLVA 446 (488)
Q Consensus 406 -----e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~a 446 (488)
..+.+...|..+.. +.++|.++|.+++.+ +.....+.+++
T Consensus 108 q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~-~~~~~~~~~~~ 155 (167)
T PF04101_consen 108 QEENAKELAKKGAAIMLDESELNPEELAEAIEELLSD-PEKLKEMAKAA 155 (167)
T ss_dssp HHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCC-HH-SHHHCCCH
T ss_pred HHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcC-cHHHHHHHHHH
Confidence 12334444555543 578899999999998 66655555443
No 147
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.96 E-value=0.00047 Score=67.48 Aligned_cols=181 Identities=20% Similarity=0.315 Sum_probs=127.5
Q ss_pred hhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEE-----eCCCchhHHhhhC---CcEEEe
Q 011355 282 FKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVA-----GDGPWGARYRDLG---TNVIVL 353 (488)
Q Consensus 282 ~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-----G~g~~~~~~~~l~---~~V~~~ 353 (488)
.|..+++|++. ++++.+..+ .|=-+..++.+..+.++. |+-.|.+. |+...+...++++ ++|+|.
T Consensus 749 ~r~~y~Lp~d~-vvf~~FNqL--yKidP~~l~~W~~ILk~V----PnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs 821 (966)
T KOG4626|consen 749 TRSQYGLPEDA-VVFCNFNQL--YKIDPSTLQMWANILKRV----PNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFS 821 (966)
T ss_pred CCCCCCCCCCe-EEEeechhh--hcCCHHHHHHHHHHHHhC----CcceeEEEeccccchHHHHHHHHHhCCCccceeec
Confidence 67788999887 777666655 444467899999999998 88766654 4323334444443 889999
Q ss_pred CccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc----ceeecCCceeEeCCCHHHHHHHHH
Q 011355 354 GPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG----SVIVGTDMGYLFSPQVESVKKALY 429 (488)
Q Consensus 354 g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~----e~v~~~~~g~l~~~d~~~la~~i~ 429 (488)
+-...+|-..-+.-+||.+-+-.. .| -.+-.|.+..|+|+|+-....... ..+..-+.|-++..+.++..+.-.
T Consensus 822 ~va~k~eHvrr~~LaDv~LDTplc-nG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV 899 (966)
T KOG4626|consen 822 PVAAKEEHVRRGQLADVCLDTPLC-NG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAV 899 (966)
T ss_pred cccchHHHHHhhhhhhhcccCcCc-CC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHH
Confidence 977777877888999999876654 33 346789999999999865332221 122223444455448889999889
Q ss_pred HHHhcCHHHHHHHHHHHHHHHh--hhCCHHHHHHHHHHHHHHhhc
Q 011355 430 GIWADGREVLEKKGLVARKRGL--NLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 430 ~ll~~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~~~~~~~ 472 (488)
++-.| .+.++.+...-+..-. .-|+-...+..++++|.++=+
T Consensus 900 ~Latd-~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~ 943 (966)
T KOG4626|consen 900 RLATD-KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWK 943 (966)
T ss_pred HhhcC-HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHH
Confidence 99888 8888888776655432 348888888888888877654
No 148
>PLN02562 UDP-glycosyltransferase
Probab=97.95 E-value=0.026 Score=56.08 Aligned_cols=131 Identities=18% Similarity=0.121 Sum_probs=79.2
Q ss_pred cEEEEEEeeec---cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCC---Cchh-HHhhhCCcEEEeCccCHHHHHHHH
Q 011355 293 SLVLGMAGRLV---KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDG---PWGA-RYRDLGTNVIVLGPLDQTRLAMFY 365 (488)
Q Consensus 293 ~~~i~~~Grl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g---~~~~-~~~~l~~~V~~~g~v~~~~l~~~~ 365 (488)
+.+++.+|+.. +.+-+..+..+++.. . ..+-+ ++..+ ...+ ..+...+|+.+.+++|+.+ ++
T Consensus 274 svvyvsfGS~~~~~~~~~~~~l~~~l~~~---g----~~fiW-~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~---iL 342 (448)
T PLN02562 274 SVIYISFGSWVSPIGESNVRTLALALEAS---G----RPFIW-VLNPVWREGLPPGYVERVSKQGKVVSWAPQLE---VL 342 (448)
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHC---C----CCEEE-EEcCCchhhCCHHHHHHhccCEEEEecCCHHH---Hh
Confidence 36777888864 233344444554444 2 22222 23321 1111 1223557899999999775 45
Q ss_pred HhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeec-CCceeEeCC-CHHHHHHHHHHHHhcCHHHH
Q 011355 366 NAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVG-TDMGYLFSP-QVESVKKALYGIWADGREVL 439 (488)
Q Consensus 366 ~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~-~~~g~l~~~-d~~~la~~i~~ll~~~~~~~ 439 (488)
+..++..+-++ -|+ ++++||+.+|+|+|+....+ .. ..+.+ -+.|+-+.. +.+++++++.+++.+ ++.+
T Consensus 343 ~h~~v~~fvtH--~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na-~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~-~~~r 417 (448)
T PLN02562 343 KHQAVGCYLTH--CGW-NSTMEAIQCQKRLLCYPVAGDQFVNC-AYIVDVWKIGVRISGFGQKEVEEGLRKVMED-SGMG 417 (448)
T ss_pred CCCccceEEec--Ccc-hhHHHHHHcCCCEEeCCcccchHHHH-HHHHHHhCceeEeCCCCHHHHHHHHHHHhCC-HHHH
Confidence 55665444343 353 58999999999999875543 21 23333 356666655 889999999999987 5443
No 149
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.93 E-value=0.0018 Score=62.08 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=72.7
Q ss_pred hhhhhhhCCCCCCcEEEEEEee-eccccChH--HHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh----CCc-EE
Q 011355 280 KDFKKKFGIPENRSLVLGMAGR-LVKDKGHP--LMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL----GTN-VI 351 (488)
Q Consensus 280 ~~~r~~~~i~~~~~~~i~~~Gr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l----~~~-V~ 351 (488)
..+.++++++.+++++++..|. ..+.|... ...+.+..+.+ .+..+++.|...+.+..+++ .++ +.
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~------~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~ 235 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID------QGYQVVLFGSAKDHPAGNEIEALLPGELRN 235 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH------CCCEEEEEEChhhHHHHHHHHHhCCccccc
Confidence 3455666776556577777776 34666653 66676666654 34678888976655544443 233 34
Q ss_pred EeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEe
Q 011355 352 VLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMAT 398 (488)
Q Consensus 352 ~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~ 398 (488)
+.|..+-.++..+++.||++|..- + | .+-=|.|.|+|+|+-
T Consensus 236 l~g~~sL~el~ali~~a~l~I~~D----S-G-p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 236 LAGETSLDEAVDLIALAKAVVTND----S-G-LMHVAAALNRPLVAL 276 (334)
T ss_pred CCCCCCHHHHHHHHHhCCEEEeeC----C-H-HHHHHHHcCCCEEEE
Confidence 678888889999999999999743 2 1 445588999999985
No 150
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.68 E-value=0.0067 Score=58.41 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=68.6
Q ss_pred hhhhhCCCCCCcEEEEEEeee-ccccCh--HHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh----CC----c-
Q 011355 282 FKKKFGIPENRSLVLGMAGRL-VKDKGH--PLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL----GT----N- 349 (488)
Q Consensus 282 ~r~~~~i~~~~~~~i~~~Grl-~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l----~~----~- 349 (488)
+.+.+++..+++++.+..|.- .+.|.. +.+.+.+..+.+ .++++++.|...+.+..+++ .. +
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~------~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~ 243 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID------EGYQVVLFGSAKDHEAGNEILAALNTEQQAWC 243 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH------CCCeEEEEeCHHhHHHHHHHHHhcccccccce
Confidence 444455544554666677753 356654 355666666653 45678888876555544432 11 1
Q ss_pred EEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEe
Q 011355 350 VIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMAT 398 (488)
Q Consensus 350 V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~ 398 (488)
+.+.|..+-.++..+++.||++|..- + | .+-=|.|.|+|+|+-
T Consensus 244 ~~l~g~~sL~el~ali~~a~l~I~nD----T-G-p~HlAaA~g~P~val 286 (348)
T PRK10916 244 RNLAGETQLEQAVILIAACKAIVTND----S-G-LMHVAAALNRPLVAL 286 (348)
T ss_pred eeccCCCCHHHHHHHHHhCCEEEecC----C-h-HHHHHHHhCCCEEEE
Confidence 55678778889999999999999743 2 1 445589999999975
No 151
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.66 E-value=0.00038 Score=58.28 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=82.1
Q ss_pred HCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCc-----------chhHHHHHHHHHHhcCCCCCcEEEeCCc-ch
Q 011355 108 KRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGY-----------LDQSIVWQQLQTQNSTGKPFDVIHTESV-GL 175 (488)
Q Consensus 108 ~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~Dvv~~~~~-~~ 175 (488)
+.||+|..+|........ .++..+.+.......... ..-....+.+..+..+...||||+.|+. +-
T Consensus 1 q~gh~v~fl~~~~~~~~~--~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe 78 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGE 78 (171)
T ss_pred CCCCEEEEEecCCCCCCC--CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcch
Confidence 369999999955433322 344444444322111111 1122334555556666668999999973 33
Q ss_pred HHhhhccCCc-EEEeeeCCcchhhhhhhhHhhhcCCCChh--HHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHH
Q 011355 176 RHTRARNLTN-VVVSWHGIAYETIHSDIIQELLRTPEEPQ--AYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRI 252 (488)
Q Consensus 176 ~~~~~~~~p~-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~ 252 (488)
...++.-.|. -+..+.+.++.....+. .-.|..+. .....-++ +.......+..+|..+++|.+.++.+-..
T Consensus 79 ~Lflkdv~P~a~li~Y~E~~y~~~g~d~----~FDpe~p~~~~~~~~~r~-rN~~~l~~l~~~D~~isPT~wQ~~~fP~~ 153 (171)
T PF12000_consen 79 TLFLKDVFPDAPLIGYFEFYYRASGADV----GFDPEFPPSLDDRARLRM-RNAHNLLALEQADAGISPTRWQRSQFPAE 153 (171)
T ss_pred hhhHHHhCCCCcEEEEEEEEecCCCCcC----CCCCCCCCCHHHHHHHHH-HhHHHHHHHHhCCcCcCCCHHHHHhCCHH
Confidence 4444433343 12223232222111111 01111111 11111121 22222345688999999999999998886
Q ss_pred hcCCCCcEEEecCCccCCCc
Q 011355 253 YMIPEERVHVILNGVDEEVF 272 (488)
Q Consensus 253 ~g~~~~~i~vi~ngvd~~~~ 272 (488)
+ .+|+.||.-|||++.+
T Consensus 154 ~---r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 154 F---RSKISVIHDGIDTDRF 170 (171)
T ss_pred H---HcCcEEeecccchhhc
Confidence 6 5799999999998754
No 152
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.60 E-value=0.091 Score=52.05 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=84.6
Q ss_pred hhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC--ch-hHHhhh-CCcEEEeCccCHH
Q 011355 284 KKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP--WG-ARYRDL-GTNVIVLGPLDQT 359 (488)
Q Consensus 284 ~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~--~~-~~~~~l-~~~V~~~g~v~~~ 359 (488)
+-++-.+.++.+.+..|+... -..+.+.+.+.-| .. -++-.++-.+.. .. ...+.. .+++.+.+++|+.
T Consensus 256 ~WLd~~~~~svvyvsfGS~~~-~~~~~~~ela~gL-s~-----~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~ 328 (449)
T PLN02173 256 DWLDKRPQGSVVYIAFGSMAK-LSSEQMEEIASAI-SN-----FSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQL 328 (449)
T ss_pred HHHhcCCCCceEEEEeccccc-CCHHHHHHHHHHh-cC-----CCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHH
Confidence 334333344477788888643 2233444444444 32 234444432111 11 122233 5789999999966
Q ss_pred HHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeecC-CceeEeC------C-CHHHHHHHH
Q 011355 360 RLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVGT-DMGYLFS------P-QVESVKKAL 428 (488)
Q Consensus 360 ~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~-~~g~l~~------~-d~~~la~~i 428 (488)
+ +++...+..+-++ -| .++++||+++|+|+|+-..-+-.. ..+.+. +.|+-+. . +.+++++++
T Consensus 329 ~---iL~H~~v~~FvtH--cG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av 402 (449)
T PLN02173 329 Q---VLSNKAIGCFMTH--CG-WNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSI 402 (449)
T ss_pred H---HhCCCccceEEec--Cc-cchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHH
Confidence 4 6777776555453 34 469999999999999975433110 233332 4555442 1 679999999
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 011355 429 YGIWADGREVLEKKGLVARK 448 (488)
Q Consensus 429 ~~ll~~~~~~~~~~~~~a~~ 448 (488)
.+++.+ ++ .+++.+++++
T Consensus 403 ~~vm~~-~~-~~~~r~~a~~ 420 (449)
T PLN02173 403 KEVMEG-EK-SKEMKENAGK 420 (449)
T ss_pred HHHhcC-Ch-HHHHHHHHHH
Confidence 999976 32 2444444433
No 153
>PLN02207 UDP-glycosyltransferase
Probab=97.56 E-value=0.038 Score=54.99 Aligned_cols=189 Identities=11% Similarity=0.041 Sum_probs=100.9
Q ss_pred hhcCCccEEEEcChhhHHH-HHHHhcC--CCCcEEEecCCccCCCcCCCc----ccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 230 KFFPKYAHHVATSDHCGDV-LKRIYMI--PEERVHVILNGVDEEVFKPDV----AMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~-~~~~~g~--~~~~i~vi~ngvd~~~~~~~~----~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
..+.++|.+++.|....+. ..+.+.- ...++..|..-..... ...+ ....++.+-++-.+.++.+.+.+|+.
T Consensus 207 ~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~-~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~ 285 (468)
T PLN02207 207 ILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKA-QPHPEQDLARRDELMKWLDDQPEASVVFLCFGSM 285 (468)
T ss_pred HhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCccccc-CCCCccccchhhHHHHHHhcCCCCcEEEEEeccC
Confidence 4468899999999876664 2222310 1124555543321110 0011 11133444454334444777788876
Q ss_pred cc--ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc-------hhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEe
Q 011355 303 VK--DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW-------GARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 303 ~~--~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~-------~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 373 (488)
.. .+.+..+..++..+ . ..+ +..+.+... ....+...+++.+.+|+|+.++ ++...+..+
T Consensus 286 ~~~~~~q~~ela~~l~~~---~----~~f-lW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~I---L~H~~vg~F 354 (468)
T PLN02207 286 GRLRGPLVKEIAHGLELC---Q----YRF-LWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEI---LAHKAVGGF 354 (468)
T ss_pred cCCCHHHHHHHHHHHHHC---C----CcE-EEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHH---hccccccee
Confidence 42 23344445555443 1 223 233332111 1122235577888899998764 455555333
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeec-CCceeEe---------CC-CHHHHHHHHHHHHh
Q 011355 374 PTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVG-TDMGYLF---------SP-QVESVKKALYGIWA 433 (488)
Q Consensus 374 ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~-~~~g~l~---------~~-d~~~la~~i~~ll~ 433 (488)
-++ -|+ ++++||+.+|+|+|+-...+-.. ..+.+ -+.|+-+ +. +.+++.++|.+++.
T Consensus 355 vTH--~Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 355 VSH--CGW-NSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred eec--Ccc-ccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 343 344 48899999999999976544110 12222 3455422 12 78999999999996
No 154
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.50 E-value=0.00068 Score=68.93 Aligned_cols=142 Identities=14% Similarity=0.178 Sum_probs=83.3
Q ss_pred hhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHH
Q 011355 281 DFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTR 360 (488)
Q Consensus 281 ~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~ 360 (488)
++.+.+.-+.+++.+++..|+... .-.+..++++.+..++. |+ +++..-++. ....+.+|+.+..|+|+.
T Consensus 265 ~~~~~~~~~~~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~----~~-~~iW~~~~~---~~~~l~~n~~~~~W~PQ~- 334 (500)
T PF00201_consen 265 ELWNFLDSSGKKGVVYVSFGSIVS-SMPEEKLKEIAEAFENL----PQ-RFIWKYEGE---PPENLPKNVLIVKWLPQN- 334 (500)
T ss_dssp HHHHHTSTTTTTEEEEEE-TSSST-T-HHHHHHHHHHHHHCS----TT-EEEEEETCS---HGCHHHTTEEEESS--HH-
T ss_pred ccchhhhccCCCCEEEEecCcccc-hhHHHHHHHHHHHHhhC----CC-ccccccccc---ccccccceEEEeccccch-
Confidence 344444322345578888898753 22333344444444444 66 555554442 223456899999999976
Q ss_pred HHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeecCCceeEeCC---CHHHHHHHHHHHHhc
Q 011355 361 LAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVGTDMGYLFSP---QVESVKKALYGIWAD 434 (488)
Q Consensus 361 l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~---d~~~la~~i~~ll~~ 434 (488)
++++...+-++-+ + .| -+.+.||+.+|+|+|+-..-+-.. ..+++.+.|..++. +.+++.++|.++++|
T Consensus 335 --~lL~hp~v~~fit-H-gG-~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 335 --DLLAHPRVKLFIT-H-GG-LNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLEN 409 (500)
T ss_dssp --HHHTSTTEEEEEE-S----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHS
T ss_pred --hhhhcccceeeee-c-cc-cchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhh
Confidence 4566555533333 2 34 569999999999999986544110 34556677887774 789999999999998
Q ss_pred CHHH
Q 011355 435 GREV 438 (488)
Q Consensus 435 ~~~~ 438 (488)
+..
T Consensus 410 -~~y 412 (500)
T PF00201_consen 410 -PSY 412 (500)
T ss_dssp -HHH
T ss_pred -hHH
Confidence 543
No 155
>PLN02764 glycosyltransferase family protein
Probab=97.49 E-value=0.029 Score=55.37 Aligned_cols=206 Identities=12% Similarity=0.002 Sum_probs=109.5
Q ss_pred hhcCCccEEEEcChhhHH-HHHHHhcCC-CCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccC
Q 011355 230 KFFPKYAHHVATSDHCGD-VLKRIYMIP-EERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKG 307 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~-~~~~~~g~~-~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg 307 (488)
+.+..++.|++.|-+..+ .+.+.+.-. ..++..|..-+.... .........-+-++-.+.++.+.+.+|+... -.
T Consensus 195 ~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~--~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~-~~ 271 (453)
T PLN02764 195 TSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPD--KTRELEERWVKWLSGYEPDSVVFCALGSQVI-LE 271 (453)
T ss_pred HhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcc--ccccchhHHHHHHhCCCCCceEEEeeccccc-CC
Confidence 345778899988744333 333323110 134665554322110 0011123344555545555578888898743 12
Q ss_pred hHHHHHHHHHhHhhccCCCCCeEEEEEe-CCCc--hh----HHhh--hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 308 HPLMFEALKQLLAENDTFRRSTVFLVAG-DGPW--GA----RYRD--LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 308 ~~~ll~a~~~l~~~~~~~~~~~~l~ivG-~g~~--~~----~~~~--l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
.+.+.+....|.... -++.+++-. .+.. .. .+++ -+..+.+.+|+|+.++ ++...+..+-++
T Consensus 272 ~~q~~ela~gL~~s~----~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~v---L~h~~v~~FvtH-- 342 (453)
T PLN02764 272 KDQFQELCLGMELTG----SPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLI---LSHPSVGCFVSH-- 342 (453)
T ss_pred HHHHHHHHHHHHhCC----CCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHH---hcCcccCeEEec--
Confidence 344566555555444 345555541 1111 11 1111 1345777899998764 555444333232
Q ss_pred CCCChHHHHHHHcCCcEEEeCCCCccc---ceee-cCCceeEeC-----C-CHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLASIVG---SVIV-GTDMGYLFS-----P-QVESVKKALYGIWADGREVLEKKGLVARK 448 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~-~~~~g~l~~-----~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~ 448 (488)
-| -++++||+.+|+|+|+-...+-.. ..+. .-+.|+-+. . +.+++.+++.++++++.+..+++.+++++
T Consensus 343 ~G-~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~ 421 (453)
T PLN02764 343 CG-FGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTK 421 (453)
T ss_pred CC-chHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34 458999999999999976543110 2332 234555441 3 78999999999998732444445444443
No 156
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=97.44 E-value=0.029 Score=49.82 Aligned_cols=296 Identities=16% Similarity=0.106 Sum_probs=143.7
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-CCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEEEeC
Q 011355 93 GGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-YPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 93 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~ 171 (488)
.|+.++..++-..+.+.|++++++......-.... .....+++... .....-..+.... .+|+++++
T Consensus 1 CGVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~--------~~~e~de~v~~vN----~yDI~m~n 68 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKY--------LAKEYDETVKKVN----DYDIVMFN 68 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE---------TTTHHHHHHHHHT----SSSEEEEE
T ss_pred CCccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehh--------hHHHHHHHHHHhh----ccCEEEEe
Confidence 48899999999999999999999998764433322 12222233211 1112223333343 79999998
Q ss_pred CcchHH-----------hhhccC-C-cEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 172 SVGLRH-----------TRARNL-T-NVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 172 ~~~~~~-----------~~~~~~-p-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
+..... .+..-. + +++...|+....... +...-...++.+|.|
T Consensus 69 SvPa~~vqE~~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~------------------------rn~~le~~m~~~DvI 124 (355)
T PF11440_consen 69 SVPATKVQEAIINNYEKIIKKIKPSIKVVGFMHDHNKLSID------------------------RNPYLEGTMNEMDVI 124 (355)
T ss_dssp E--BTTS-HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHT------------------------TBSSHHHHHHH-SEE
T ss_pred cccCchHHHHHHHHHHHHHHhccccceeEEEeeccceeecc------------------------ccccHHHHHHhhcEE
Confidence 743211 111111 1 256777875332211 111111345678999
Q ss_pred EEcChhh--HHHHH-HHhcC---CCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEE---EEEeeeccccChH
Q 011355 239 VATSDHC--GDVLK-RIYMI---PEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVL---GMAGRLVKDKGHP 309 (488)
Q Consensus 239 i~~S~~~--~~~~~-~~~g~---~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i---~~~Grl~~~Kg~~ 309 (488)
.+.|... .+.+. ..+.- ..+++...|-....+ .+.+-...|..+-....+ +.. .|+||..-.||..
T Consensus 125 fshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~nfq----pp~~i~~~Rstywkd~se-~nmnv~~yigR~Tt~kG~~ 199 (355)
T PF11440_consen 125 FSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMVFNFQ----PPMDINKYRSTYWKDVSE-KNMNVNRYIGRQTTWKGPR 199 (355)
T ss_dssp EES-TTSHHHHTHHHHHS-SS--SSS-------EEE--------B-HHHHHHHH---GGG-SEEEEEEEE--SSGGG-HH
T ss_pred EeccccchHHHHHHHhhccccCchhhhhhhcceeeecC----CcccHHHHHHHHhhhhHh-hhcccceeeeeeeeecCcH
Confidence 9987542 23333 33321 112344333332221 122224556655533333 444 6999999999999
Q ss_pred HHHHHHHHhHhhccCCCCCeEEEEEeCCCchh--HHhh-----------------hC--CcEEEeCccCHHHHHHHHHhc
Q 011355 310 LMFEALKQLLAENDTFRRSTVFLVAGDGPWGA--RYRD-----------------LG--TNVIVLGPLDQTRLAMFYNAI 368 (488)
Q Consensus 310 ~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~--~~~~-----------------l~--~~V~~~g~v~~~~l~~~~~~a 368 (488)
.+++..++..+. ++.+-++-|=..... .+.+ +. .-+.++|..-++|..+.++.+
T Consensus 200 ~mfD~h~~~lK~-----~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks 274 (355)
T PF11440_consen 200 RMFDLHEKILKP-----AGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKS 274 (355)
T ss_dssp HHHHHHHHTTTT-----TT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTE
T ss_pred HHhhhHHHhcCC-----cchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhc
Confidence 999998886654 578888888321111 1111 12 237788876689999999998
Q ss_pred CEEEeCCC-C----CCCCChHHHHHHHcCC-cEEEeCCCCccc------ceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 369 DIFVNPTL-R----AQGLDHTVLEAMLSGK-PLMATRLASIVG------SVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 369 dv~v~ps~-~----~eg~~~~~lEAma~G~-PVI~~~~~~~~~------e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
-+...-+. . .+.+-.+-+|..|||. ||.-...|..-. ..+......+.++. |.++-.+.|.++.++
T Consensus 275 ~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 275 LFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp EEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred cceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHHHHHhcc
Confidence 88765432 1 2346778999999996 665543322110 23344455566666 777777777777655
No 157
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.40 E-value=0.18 Score=50.53 Aligned_cols=78 Identities=17% Similarity=0.326 Sum_probs=51.9
Q ss_pred CcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeec-CCceeEeC--
Q 011355 348 TNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVG-TDMGYLFS-- 418 (488)
Q Consensus 348 ~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~-~~~g~l~~-- 418 (488)
.++.+.+++|+.+ ++.. +++||. + -|+ ++++||+++|+|+|+-...+ .. ..+.+ -+.|..+.
T Consensus 343 ~g~~v~~w~PQ~~---vL~h~~v~~fvt--H--~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na-~~v~~~~gvG~~~~~~ 413 (477)
T PLN02863 343 RGLVIRGWAPQVA---ILSHRAVGAFLT--H--CGW-NSVLEGLVAGVPMLAWPMAADQFVNA-SLLVDELKVAVRVCEG 413 (477)
T ss_pred CCEEecCCCCHHH---HhcCCCcCeEEe--c--CCc-hHHHHHHHcCCCEEeCCccccchhhH-HHHHHhhceeEEeccC
Confidence 5688889999764 5555 445554 2 343 58999999999999975433 11 22222 25565551
Q ss_pred ---C-CHHHHHHHHHHHHhc
Q 011355 419 ---P-QVESVKKALYGIWAD 434 (488)
Q Consensus 419 ---~-d~~~la~~i~~ll~~ 434 (488)
. +.+++++++.+++.+
T Consensus 414 ~~~~~~~~~v~~~v~~~m~~ 433 (477)
T PLN02863 414 ADTVPDSDELARVFMESVSE 433 (477)
T ss_pred CCCCcCHHHHHHHHHHHhhc
Confidence 2 678999999998843
No 158
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.36 E-value=0.094 Score=46.38 Aligned_cols=257 Identities=16% Similarity=0.164 Sum_probs=125.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
|||-.+++ ...|..+.+..|++.|.+..+.|.++....-. ..+..-.... ..-.....+....
T Consensus 1 ~ki~aisD------~RtGnt~QaiaLa~~l~r~eyttk~l~~~~l~------~lP~~wl~~y-----p~~~~~~l~~~~~ 63 (329)
T COG3660 1 MKIWAISD------GRTGNTHQAIALAEQLTRSEYTTKLLEYNNLA------KLPNFWLAYY-----PIHILRELFGPRL 63 (329)
T ss_pred CceEEeec------CCCccHHHHHHHHHHhhccceEEEEeeccccc------cCchhhhhcC-----ccHhHHHhhcCcc
Confidence 78888886 67899999999999998644555555443111 1111000000 0000111111111
Q ss_pred HHhcCCCCCcEEEeCCc---chHHhhhccC--CcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 157 TQNSTGKPFDVIHTESV---GLRHTRARNL--TNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~---~~~~~~~~~~--p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
....+. .||+++..+- .+...+.+.. + .++.+.+.. .|
T Consensus 64 ~r~p~~-~Pdl~I~aGrrta~l~~~lkk~~~~~-~vVqI~~Pr--------------lp--------------------- 106 (329)
T COG3660 64 SRKPEQ-RPDLIITAGRRTAPLAFYLKKKFGGI-KVVQIQDPR--------------LP--------------------- 106 (329)
T ss_pred ccCccC-CCceEEecccchhHHHHHHHHhcCCc-eEEEeeCCC--------------CC---------------------
Confidence 111122 6999998752 1222222222 3 444444321 01
Q ss_pred cCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCC-cccchhhhhhhCCCCCCcEEEEEEeeeccccCh--
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPD-VAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGH-- 308 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~-~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~-- 308 (488)
++..|.+|+.-+...+.... ...++.-| ||.....-... ...++.+++.+ |..++++-+++|.-.+.-..
T Consensus 107 ~~~fDlvivp~HD~~~~~s~----~~~Nilpi-~Gs~h~Vt~~~lAa~~e~~~~~~--p~~rq~vAVlVGg~nk~f~~~~ 179 (329)
T COG3660 107 YNHFDLVIVPYHDWREELSD----QGPNILPI-NGSPHNVTSQRLAALREAFKHLL--PLPRQRVAVLVGGNNKAFVFQE 179 (329)
T ss_pred cccceEEeccchhhhhhhhc----cCCceeec-cCCCCcccHHHhhhhHHHHHhhC--CCCCceEEEEecCCCCCCccCH
Confidence 23467777776555544221 12333332 44432221111 11223333333 55556788889865443332
Q ss_pred ---HHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh-----hC-CcEEEeCcc--CHHHHHHHHHhcCEEEeCCCC
Q 011355 309 ---PLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD-----LG-TNVIVLGPL--DQTRLAMFYNAIDIFVNPTLR 377 (488)
Q Consensus 309 ---~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~-----l~-~~V~~~g~v--~~~~l~~~~~~adv~v~ps~~ 377 (488)
..+..++.+..++ ....+++--+-...+..+. +. .-..+...- +..-..+++++||.+|.+.
T Consensus 180 d~a~q~~~~l~k~l~~-----~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~Ta-- 252 (329)
T COG3660 180 DKAHQFASLLVKILEN-----QGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTA-- 252 (329)
T ss_pred HHHHHHHHHHHHHHHh-----CCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEec--
Confidence 2333444333332 2345555543222222222 22 223333322 3345789999999999854
Q ss_pred CCCCChHHHHHHHcCCcEEEeCCCCc
Q 011355 378 AQGLDHTVLEAMLSGKPLMATRLASI 403 (488)
Q Consensus 378 ~eg~~~~~lEAma~G~PVI~~~~~~~ 403 (488)
++ =....||.+.|+||-+..-++.
T Consensus 253 -DS-inM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 253 -DS-INMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred -ch-hhhhHHHhccCCCeEEEecCCc
Confidence 22 2367899999999988654443
No 159
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=97.34 E-value=0.0066 Score=55.52 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=35.0
Q ss_pred eEEEEEec-CCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVK-KWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~-~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+|++++. .||. ..||++..+.+|++.|.+..+.|..++...
T Consensus 1 ~~V~ll~EGtYPy--v~GGVSsW~~~LI~glpe~~F~v~~i~a~~ 43 (268)
T PF11997_consen 1 MDVCLLTEGTYPY--VRGGVSSWVHQLIRGLPEHEFHVYAIGANP 43 (268)
T ss_pred CeEEEEecCcCCC--CCCchhHHHHHHHhcCCCceEEEEEEeCCc
Confidence 78999976 5777 899999999999999988767777777664
No 160
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.33 E-value=0.11 Score=49.40 Aligned_cols=94 Identities=16% Similarity=0.072 Sum_probs=61.3
Q ss_pred EEEEEEeeeccccCh--HHHHHHHHHhHhhccCCCCCeEEEEE-eCCCchhHHhhh---CCcEEEeCccCHHHHHHHHHh
Q 011355 294 LVLGMAGRLVKDKGH--PLMFEALKQLLAENDTFRRSTVFLVA-GDGPWGARYRDL---GTNVIVLGPLDQTRLAMFYNA 367 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~l~iv-G~g~~~~~~~~l---~~~V~~~g~v~~~~l~~~~~~ 367 (488)
++++..|.-.+.|.. +...+.+..+.+ .+..+++. |...+.+..+++ ..++.+.|..+-.|+..+++.
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~------~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAP------SGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHH------CCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHh
Confidence 554445543445554 356676666654 24566675 543344333333 245778898888999999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeC
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATR 399 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~ 399 (488)
||++|..-. | .+-=|.|+|+|+|+-=
T Consensus 254 a~l~I~nDS---G---p~HlA~A~g~p~valf 279 (322)
T PRK10964 254 AKAVVSVDT---G---LSHLTAALDRPNITLY 279 (322)
T ss_pred CCEEEecCC---c---HHHHHHHhCCCEEEEE
Confidence 999997431 2 4455899999999853
No 161
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.32 E-value=0.062 Score=54.02 Aligned_cols=191 Identities=14% Similarity=0.069 Sum_probs=97.4
Q ss_pred hhcCCccEEEEcChhhHH-HHHHHhc-C--CCCcEEEecCCccCCCcCCC--cccchhhhhhhCCCCCCcEEEEEEeeec
Q 011355 230 KFFPKYAHHVATSDHCGD-VLKRIYM-I--PEERVHVILNGVDEEVFKPD--VAMGKDFKKKFGIPENRSLVLGMAGRLV 303 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~-~~~~~~g-~--~~~~i~vi~ngvd~~~~~~~--~~~~~~~r~~~~i~~~~~~~i~~~Grl~ 303 (488)
..+.+++.+++.|-...+ .....+. . ...++..|+.-+........ .....++.+-++-.+.++.+.+.+|+..
T Consensus 206 ~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~ 285 (481)
T PLN02554 206 RRFREMKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMG 285 (481)
T ss_pred HhcccCCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccc
Confidence 456789999998854333 2222221 0 11245555443221111000 1111234444443333446777888863
Q ss_pred c--ccChHHHHHHHHHhHhhccCCCCCeEEEEEeC---------CC--c-----h-hHHhhhCCcEEEeCccCHHHHHHH
Q 011355 304 K--DKGHPLMFEALKQLLAENDTFRRSTVFLVAGD---------GP--W-----G-ARYRDLGTNVIVLGPLDQTRLAMF 364 (488)
Q Consensus 304 ~--~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~---------g~--~-----~-~~~~~l~~~V~~~g~v~~~~l~~~ 364 (488)
. .+.+..++.+++.. . .++-+++-+. +. . . ...+...+++.+.+++|+.++...
T Consensus 286 ~~~~~~~~~la~~l~~~---~----~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H 358 (481)
T PLN02554 286 GFSEEQAREIAIALERS---G----HRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAK 358 (481)
T ss_pred cCCHHHHHHHHHHHHHc---C----CCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCC
Confidence 2 33444555555443 2 2232222111 00 0 0 111224567888899997754221
Q ss_pred HHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeC-------------C-CHHHHHH
Q 011355 365 YNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFS-------------P-QVESVKK 426 (488)
Q Consensus 365 ~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~-------------~-d~~~la~ 426 (488)
.++..|| ++ -|+ ++++||+.+|+|+|+-...+ ....+++.-+.|..++ . +.+++++
T Consensus 359 -~~v~~Fv--tH--~G~-nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~ 432 (481)
T PLN02554 359 -PAIGGFV--TH--CGW-NSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIER 432 (481)
T ss_pred -cccCccc--cc--Ccc-chHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHH
Confidence 3444455 32 343 58999999999999976443 1101233334555542 3 7899999
Q ss_pred HHHHHHh
Q 011355 427 ALYGIWA 433 (488)
Q Consensus 427 ~i~~ll~ 433 (488)
+|.+++.
T Consensus 433 av~~vm~ 439 (481)
T PLN02554 433 GIRCLME 439 (481)
T ss_pred HHHHHhc
Confidence 9999997
No 162
>PLN02670 transferase, transferring glycosyl groups
Probab=97.30 E-value=0.014 Score=58.14 Aligned_cols=228 Identities=13% Similarity=0.014 Sum_probs=118.4
Q ss_pred hhcCCccEEEEcChhhHH-HHHHHhcCC-CCcEEEecCCccC-CCcCCCc-cc---chhhhhhhCCCCCCcEEEEEEeee
Q 011355 230 KFFPKYAHHVATSDHCGD-VLKRIYMIP-EERVHVILNGVDE-EVFKPDV-AM---GKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~-~~~~~~g~~-~~~i~vi~ngvd~-~~~~~~~-~~---~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
....+++.+++.|-...+ .+.+.+.-. ..++.-|+.-+.. ..-.... .. ..++.+-++-.+.+..+.+.+|+.
T Consensus 209 ~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~ 288 (472)
T PLN02670 209 FAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTE 288 (472)
T ss_pred hhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEeccc
Confidence 345788999988854333 222222100 1245555433211 0000000 00 023444454433444777788887
Q ss_pred cc--ccChHHHHHHHHHhHhhccCCCCCeEEEEEeC-CCchhHHhhh---------CCcEEEeCccCHHHHHHHHHhcCE
Q 011355 303 VK--DKGHPLMFEALKQLLAENDTFRRSTVFLVAGD-GPWGARYRDL---------GTNVIVLGPLDQTRLAMFYNAIDI 370 (488)
Q Consensus 303 ~~--~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-g~~~~~~~~l---------~~~V~~~g~v~~~~l~~~~~~adv 370 (488)
.. .+.+..+..++... . ..+-.++-.. +...+....+ +..+.+.+|+|+.+ +++...+
T Consensus 289 ~~l~~~q~~ela~gl~~s---~----~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~---IL~H~~v 358 (472)
T PLN02670 289 ASLRREEVTELALGLEKS---E----TPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVK---ILSHESV 358 (472)
T ss_pred ccCCHHHHHHHHHHHHHC---C----CCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHH---HhcCccc
Confidence 42 23334444444443 2 2333333221 1101101111 13377789999775 5666666
Q ss_pred EEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeC------C-CHHHHHHHHHHHHhcCH-HH
Q 011355 371 FVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFS------P-QVESVKKALYGIWADGR-EV 438 (488)
Q Consensus 371 ~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~------~-d~~~la~~i~~ll~~~~-~~ 438 (488)
..+-++ -| -++++||+++|+|+|+-...+ .. ..+...+.|+.++ . +.+++.++|.+++.+++ +.
T Consensus 359 ~~FvtH--cG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na-~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~ 434 (472)
T PLN02670 359 GGFLTH--CG-WNSVVEGLGFGRVLILFPVLNEQGLNT-RLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEE 434 (472)
T ss_pred ceeeec--CC-cchHHHHHHcCCCEEeCcchhccHHHH-HHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHH
Confidence 444443 34 358999999999999976443 11 2334456777663 2 68999999999997621 12
Q ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Q 011355 439 LEKKGLVARKRGLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 439 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
+++-.++.++.+.++=..+++++.+.+.+.+..
T Consensus 435 ~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 435 IRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 333333334444444466777777777666544
No 163
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.29 E-value=0.078 Score=53.23 Aligned_cols=188 Identities=14% Similarity=0.069 Sum_probs=96.8
Q ss_pred hhcCCccEEEEcChhhHH-HHHHHhc-C--CCCcEEEecCCccCCC-cC-C-CcccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 230 KFFPKYAHHVATSDHCGD-VLKRIYM-I--PEERVHVILNGVDEEV-FK-P-DVAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~-~~~~~~g-~--~~~~i~vi~ngvd~~~-~~-~-~~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
....++|.|++.|-...+ ...+.+. . ...++..|..-..... .. . ......++.+-+.-.+.++.+.+..|++
T Consensus 211 ~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~ 290 (475)
T PLN02167 211 ERFPEAKGILVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSL 290 (475)
T ss_pred HhhcccCEeeeccHHHHHHHHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeeccc
Confidence 345789999998854433 2222221 0 0124554443221110 00 0 0111133444454444444677788886
Q ss_pred cc--ccChHHHHHHHHHhHhhccCCCCCeEEE-EEeCCCc---------h-hHHhhhCCcEEEeCccCHHHHHHHHHhcC
Q 011355 303 VK--DKGHPLMFEALKQLLAENDTFRRSTVFL-VAGDGPW---------G-ARYRDLGTNVIVLGPLDQTRLAMFYNAID 369 (488)
Q Consensus 303 ~~--~Kg~~~ll~a~~~l~~~~~~~~~~~~l~-ivG~g~~---------~-~~~~~l~~~V~~~g~v~~~~l~~~~~~ad 369 (488)
.. .+.+..+..+++.. +..++ +++.... . ...+...++..+.+++|+.+ +++...
T Consensus 291 ~~~~~~~~~ela~~l~~~---------~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~---iL~h~~ 358 (475)
T PLN02167 291 GSLPAPQIKEIAQALELV---------GCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVE---ILAHKA 358 (475)
T ss_pred ccCCHHHHHHHHHHHHhC---------CCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHH---HhcCcc
Confidence 32 23344444444443 22333 3332111 0 11112334557789999775 555544
Q ss_pred --EEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---c-eeecCCceeEeC---------C-CHHHHHHHHHHHHh
Q 011355 370 --IFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---S-VIVGTDMGYLFS---------P-QVESVKKALYGIWA 433 (488)
Q Consensus 370 --v~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e-~v~~~~~g~l~~---------~-d~~~la~~i~~ll~ 433 (488)
.||. + -|+ ++++||+++|+|+|+-...+-.. . ++..-+.|+.+. . +.++++++|.+++.
T Consensus 359 vg~fvt---H-~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~ 433 (475)
T PLN02167 359 IGGFVS---H-CGW-NSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMD 433 (475)
T ss_pred cCeEEe---e-CCc-ccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhc
Confidence 4554 2 354 48999999999999875433110 1 123335565542 2 78999999999997
Q ss_pred c
Q 011355 434 D 434 (488)
Q Consensus 434 ~ 434 (488)
+
T Consensus 434 ~ 434 (475)
T PLN02167 434 G 434 (475)
T ss_pred C
Confidence 6
No 164
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=97.27 E-value=0.18 Score=47.96 Aligned_cols=311 Identities=14% Similarity=0.071 Sum_probs=152.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCc--ch-hHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGY--LD-QSIV 151 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~-~~~~ 151 (488)
||++++. .| +....|-+-.+..+.++|++. ..+|.+++..++... ..+... ..|..... .. ....
T Consensus 1 m~~~L~g-~~--g~gN~Gdeail~all~~l~~~~~~~~~~~~~~~p~~i~------~p~~~~-~~p~~~~~~l~g~~k~v 70 (385)
T COG2327 1 MKALLLG-YY--GFGNIGDEAILKALLDMLRRLNPDAKVLVMGRRPPVIV------DPVFLS-ANPEGSAAGLNGRVKSV 70 (385)
T ss_pred CeeEEEe-ee--cCCCcccHHHHHHHHHHHHhhCcccceeeeecCCcccc------cceeec-CCcccCchhhhHHHHHH
Confidence 6766665 44 336778888899999999866 567777777652211 111111 11111011 11 1111
Q ss_pred HHHHH------HHhcCCCCCcEEEeCCcc-----------------hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhc
Q 011355 152 WQQLQ------TQNSTGKPFDVIHTESVG-----------------LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLR 208 (488)
Q Consensus 152 ~~~~~------~~~~~~~~~Dvv~~~~~~-----------------~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~ 208 (488)
.++.. .......+.|++++...+ +......+.| ++..-|+..+
T Consensus 71 ~R~~~k~~~~~~il~~l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp-~~~~g~svGP------------- 136 (385)
T COG2327 71 LRRRLKHPGLVSILSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKP-TFFFGQSVGP------------- 136 (385)
T ss_pred HHHhhccccHHHHHHHhhhCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCC-EEEEeccCCC-------------
Confidence 11111 122222278999886321 1111223456 6666666432
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCC
Q 011355 209 TPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGI 288 (488)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i 288 (488)
...+.++++.. ..++.++.+++-.+...+.++. .|++..... |..+.-+......... .+.
T Consensus 137 -~~~~~s~~~~~---------~~~~~~s~i~vRD~~S~~llk~-~gi~a~l~~------D~Af~L~~~~~~~~~~--~~~ 197 (385)
T COG2327 137 -LKHPLSRQLLN---------YVLGGCSAISVRDPVSYELLKQ-LGINARLVT------DPAFLLPASSQNATAS--DVE 197 (385)
T ss_pred -ccCHHHHHHHH---------HHhcCCcEEEEecHHhHHHHHH-cCCCeEeec------Ccceeccccccccccc--ccc
Confidence 12222222222 3467788888888888888885 787543222 4332221111100000 011
Q ss_pred CCCCcEEEEEEeeeccccChH-----HHHHHHHHhHhhccCCCCCeEEEE--EeCCCchhHHhh----hC--CcEEEeCc
Q 011355 289 PENRSLVLGMAGRLVKDKGHP-----LMFEALKQLLAENDTFRRSTVFLV--AGDGPWGARYRD----LG--TNVIVLGP 355 (488)
Q Consensus 289 ~~~~~~~i~~~Grl~~~Kg~~-----~ll~a~~~l~~~~~~~~~~~~l~i--vG~g~~~~~~~~----l~--~~V~~~g~ 355 (488)
.+.+ .+.+..-.+.+.+..+ .+-+++..+..+.. ...++.. .+...+....+. .. +++.+..-
T Consensus 198 ~~~~-~~~i~lr~~~~~~t~~~~~~~~v~~~l~~~~~~~~---~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d 273 (385)
T COG2327 198 AREK-TVAITLRGLHPDNTAQRSILKYVNEALDLVERQVK---ALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSD 273 (385)
T ss_pred cccc-eEEEEecccCCchhhhHHHHHHHHHHHHHHHHhhh---cceEEEeeeccccchhHHHHHHHhhcCCccceEeecc
Confidence 1222 2333333343332222 22333333311110 3333333 333222221221 22 56666553
Q ss_pred cCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeec-CCceeEeC--C-CHHHHHHHHHHH
Q 011355 356 LDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG-TDMGYLFS--P-QVESVKKALYGI 431 (488)
Q Consensus 356 v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~-~~~g~l~~--~-d~~~la~~i~~l 431 (488)
...+++...+++||++|..-++ .++=|++.|+|+|+-....=...+.++ +-.++..+ + |.+.+.+...+.
T Consensus 274 ~~~~~~~~~l~~~dl~Vg~R~H------saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~ 347 (385)
T COG2327 274 EYAEELGGILAACDLIVGMRLH------SAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLER 347 (385)
T ss_pred hHHHHHHHHhccCceEEeehhH------HHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHH
Confidence 2246788899999999985543 677899999999997554322111111 22333333 4 889999998888
Q ss_pred HhcCHHHHH
Q 011355 432 WADGREVLE 440 (488)
Q Consensus 432 l~~~~~~~~ 440 (488)
+.+.++.++
T Consensus 348 ~~~~~~~~~ 356 (385)
T COG2327 348 LTKLDELRE 356 (385)
T ss_pred HhccHHHHh
Confidence 887444443
No 165
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.27 E-value=0.047 Score=52.67 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=63.1
Q ss_pred cEEEEEEeeeccccCh--HHHHHHHHHhHhhccCCCCCeEEEEEeCCCc--hhHHhhh----C--CcEEEeCccCHHHHH
Q 011355 293 SLVLGMAGRLVKDKGH--PLMFEALKQLLAENDTFRRSTVFLVAGDGPW--GARYRDL----G--TNVIVLGPLDQTRLA 362 (488)
Q Consensus 293 ~~~i~~~Grl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~--~~~~~~l----~--~~V~~~g~v~~~~l~ 362 (488)
+++++..|.-.+.|.. +...+.+..+.+ .+..+++.|...+ .+..+++ . ..+.+.|..+-.|+.
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~------~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ 257 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQA------RGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELG 257 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHH------CCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHH
Confidence 4677788876666765 356666666654 3567788875322 2212222 1 235678888889999
Q ss_pred HHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeC
Q 011355 363 MFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATR 399 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~ 399 (488)
.+++.||++|..- + | .+-=|.|.|+|+|+--
T Consensus 258 ali~~a~l~v~nD----S-G-p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 258 ALIDHAQLFIGVD----S-A-PAHIAAAVNTPLICLF 288 (352)
T ss_pred HHHHhCCEEEecC----C-H-HHHHHHHcCCCEEEEE
Confidence 9999999999733 2 1 4455889999999853
No 166
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.043 Score=52.40 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=67.2
Q ss_pred CcEEEEEEe-eeccccChH--HHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhC----CcEEEeCccCHHHHHHH
Q 011355 292 RSLVLGMAG-RLVKDKGHP--LMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLG----TNVIVLGPLDQTRLAMF 364 (488)
Q Consensus 292 ~~~~i~~~G-rl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~----~~V~~~g~v~~~~l~~~ 364 (488)
++.+++..| +....|... ...+.+..+.++ ..+++++|...+.+..+++. ..+.+.|..+-+|+..+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~------~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~l 248 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAK------GYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAAL 248 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHC------CCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHH
Confidence 346777888 665777653 556666666653 36888889775555544433 23338898889999999
Q ss_pred HHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeC
Q 011355 365 YNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATR 399 (488)
Q Consensus 365 ~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~ 399 (488)
++.||++|.+.. | .+-=|.|.|+|+|+--
T Consensus 249 i~~a~l~I~~DS---g---~~HlAaA~~~P~I~iy 277 (334)
T COG0859 249 IAGADLVIGNDS---G---PMHLAAALGTPTIALY 277 (334)
T ss_pred HhcCCEEEccCC---h---HHHHHHHcCCCEEEEE
Confidence 999999997542 2 3444899999999853
No 167
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.013 Score=60.83 Aligned_cols=198 Identities=18% Similarity=0.198 Sum_probs=133.3
Q ss_pred cEEEecCCccCCCcCCCcc------cchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEE
Q 011355 259 RVHVILNGVDEEVFKPDVA------MGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFL 332 (488)
Q Consensus 259 ~i~vi~ngvd~~~~~~~~~------~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ 332 (488)
.+..+|-|+|...+..... ...++++.+ .++ .+++-+-+++.-||+..=+.++.++..+++++++++.++
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~-klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvli 315 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGK-KLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLI 315 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc---cCC-ceEecccccccccCchHHHHHHHHHHHhChhhhceEEEE
Confidence 3445666777665533221 123333333 244 567778899999999999999999999998777888887
Q ss_pred EEeCCCc--h---hHHhh----------------hCCcE-EEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHH
Q 011355 333 VAGDGPW--G---ARYRD----------------LGTNV-IVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAML 390 (488)
Q Consensus 333 ivG~g~~--~---~~~~~----------------l~~~V-~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma 390 (488)
.+..+.. . +.++. ....| .+...++..++.+++..+|+.+..+.+ +|..++.+|+..
T Consensus 316 qi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~r-dGmnl~~~e~i~ 394 (732)
T KOG1050|consen 316 QIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWR-DGMNLVFLEYIL 394 (732)
T ss_pred EEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccc-cccchhhhHHHH
Confidence 7764321 1 11221 11233 455678999999999999999998975 999999999998
Q ss_pred cC----CcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHH
Q 011355 391 SG----KPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYER 465 (488)
Q Consensus 391 ~G----~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 465 (488)
|. .+.|.+.+-|.. +.+ +....++.+ |.++++.+|...++.+.+.++..-...+.++.. .+....++.+..
T Consensus 395 ~~~~~~~~lVlsef~G~~-~tl--~d~aivvnpw~~~~~~~~i~~al~~s~~e~~~r~~~~~~~v~~-~~~~~W~~~~~~ 470 (732)
T KOG1050|consen 395 CQENKKSVLVLSEFIGDD-TTL--EDAAIVVNPWDGDEFAILISKALTMSDEERELREPKHYKYVST-HDVVYWAKSFLQ 470 (732)
T ss_pred hhcccCCceEEeeecccc-ccc--cccCEEECCcchHHHHHHHHHHhhcCHHHHhhcchhhhhhhcc-hhHHHHHHHHHH
Confidence 85 677888877765 333 345578888 999999999999998555555444444444322 344444444444
No 168
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.19 E-value=0.21 Score=46.96 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=83.4
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeec--cccC
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLV--KDKG 307 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~--~~Kg 307 (488)
+.++++|.+.+-.+...+.+++ +|+ ++.+.+..+ ..-+.... . .. ...+++.+.+.+.... ..+.
T Consensus 123 ~~l~~~~~i~vRD~~S~~~l~~-~g~---~i~~~~D~a---~~l~~~~~-~---~~--~~~~~~~i~i~~r~~~~~~~~~ 189 (298)
T TIGR03609 123 RVLRGCRAISVRDAASYRLLKR-LGI---PAELAADPV---WLLPPEPW-P---GG--EPLPEPVIVVSLRPWPLLDVSR 189 (298)
T ss_pred HHHccCCEEEEeCHHHHHHHHH-hCC---CceEeCChh---hhCCCCcc-c---cc--ccCCCCeEEEEECCCCcCCHHH
Confidence 4578899999988888888876 776 355555432 21111000 0 00 0112223333332211 1223
Q ss_pred hHHHHHHHHHhHhhccCCCCCeEEEEEeC--CCchhHHhh----hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCC
Q 011355 308 HPLMFEALKQLLAENDTFRRSTVFLVAGD--GPWGARYRD----LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGL 381 (488)
Q Consensus 308 ~~~ll~a~~~l~~~~~~~~~~~~l~ivG~--g~~~~~~~~----l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~ 381 (488)
.+.+.+++..+.++. +.+++++.- +.+.+..++ +.+...+....+.+|+..++++||++|...++
T Consensus 190 ~~~l~~~l~~l~~~~-----g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH---- 260 (298)
T TIGR03609 190 LLRLLRALDRLQRDT-----GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH---- 260 (298)
T ss_pred HHHHHHHHHHHHHhh-----CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH----
Confidence 556777777776653 445555443 222222222 22222333556788999999999999986654
Q ss_pred ChHHHHHHHcCCcEEEeCC
Q 011355 382 DHTVLEAMLSGKPLMATRL 400 (488)
Q Consensus 382 ~~~~lEAma~G~PVI~~~~ 400 (488)
.++=|+.+|+|+|+-..
T Consensus 261 --~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 261 --ALILAAAAGVPFVALSY 277 (298)
T ss_pred --HHHHHHHcCCCEEEeec
Confidence 56779999999997643
No 169
>PLN02555 limonoid glucosyltransferase
Probab=97.18 E-value=0.16 Score=50.75 Aligned_cols=203 Identities=14% Similarity=0.017 Sum_probs=103.9
Q ss_pred hhcCCccEEEEcChhhHH-HHHHHhcCCCCcEEEecCCccCCC-c-CC--C--cccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 230 KFFPKYAHHVATSDHCGD-VLKRIYMIPEERVHVILNGVDEEV-F-KP--D--VAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~-~~~~~~g~~~~~i~vi~ngvd~~~-~-~~--~--~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
....+++.+++.|-...+ ...+.+.- ..++..|..-+.... . .. . ........+-++-.+.+..+.+.+|++
T Consensus 209 ~~~~~a~~vlvNTf~eLE~~~~~~l~~-~~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~ 287 (480)
T PLN02555 209 KNLDKPFCILIDTFQELEKEIIDYMSK-LCPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTV 287 (480)
T ss_pred HhcccCCEEEEEchHHHhHHHHHHHhh-CCCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccc
Confidence 456788999998854433 22222311 113555544321110 0 00 0 011123333443333333677788876
Q ss_pred ccccChHHHHHHHHHhHhhccCCCCCeEEEEE-eCC-----C----ch-hHHhhhCCcEEEeCccCHHHHHHHHHhcCEE
Q 011355 303 VKDKGHPLMFEALKQLLAENDTFRRSTVFLVA-GDG-----P----WG-ARYRDLGTNVIVLGPLDQTRLAMFYNAIDIF 371 (488)
Q Consensus 303 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-G~g-----~----~~-~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~ 371 (488)
.. -..+.+.+.+..+... +..++.+ ... . .. ...+...+++.+.+++|+.++... .++.+|
T Consensus 288 ~~-~~~~q~~ela~~l~~~------~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H-~~v~~F 359 (480)
T PLN02555 288 VY-LKQEQIDEIAYGVLNS------GVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAH-PSVACF 359 (480)
T ss_pred cC-CCHHHHHHHHHHHHhc------CCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCC-CccCeE
Confidence 42 2223344444434332 2344433 311 0 11 223335578888999997654322 445556
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecC-CceeEeC-------C-CHHHHHHHHHHHHhcCHHH
Q 011355 372 VNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGT-DMGYLFS-------P-QVESVKKALYGIWADGREV 438 (488)
Q Consensus 372 v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~-~~g~l~~-------~-d~~~la~~i~~ll~~~~~~ 438 (488)
|. + -| -++++||+.+|+|+|+-..-+ .. ..+.+. +.|+-+. . +.++++++|.+++.+ ++
T Consensus 360 vt---H-~G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na-~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~-~~- 431 (480)
T PLN02555 360 VT---H-CG-WNSTMEALSSGVPVVCFPQWGDQVTDA-VYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVG-EK- 431 (480)
T ss_pred Ee---c-CC-cchHHHHHHcCCCEEeCCCccccHHHH-HHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcC-ch-
Confidence 64 2 34 358999999999999976543 11 223333 5666651 2 689999999999975 32
Q ss_pred HHHHHHHHHHH
Q 011355 439 LEKKGLVARKR 449 (488)
Q Consensus 439 ~~~~~~~a~~~ 449 (488)
-++|++++++.
T Consensus 432 g~~~r~ra~~l 442 (480)
T PLN02555 432 AAELKQNALKW 442 (480)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 170
>PLN00164 glucosyltransferase; Provisional
Probab=97.18 E-value=0.32 Score=48.90 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=60.1
Q ss_pred CcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----ccccee-ecCCceeEeC----
Q 011355 348 TNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVI-VGTDMGYLFS---- 418 (488)
Q Consensus 348 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v-~~~~~g~l~~---- 418 (488)
..+.+.+++|+.+ +++.+++..+-++ -|+ ++++||+.+|+|+|+-..-+ .. ..+ ..-+.|+.+.
T Consensus 339 ~g~~v~~w~PQ~~---iL~h~~vg~fvtH--~Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na-~~~~~~~gvG~~~~~~~~ 411 (480)
T PLN00164 339 RGLVWPTWAPQKE---ILAHAAVGGFVTH--CGW-NSVLESLWHGVPMAPWPLYAEQHLNA-FELVADMGVAVAMKVDRK 411 (480)
T ss_pred CCeEEeecCCHHH---HhcCcccCeEEee--ccc-chHHHHHHcCCCEEeCCccccchhHH-HHHHHHhCeEEEeccccc
Confidence 4477779999774 5667776444343 354 48999999999999975433 11 122 2335666552
Q ss_pred ---C-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011355 419 ---P-QVESVKKALYGIWADGREVLEKKGLVARKR 449 (488)
Q Consensus 419 ---~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~ 449 (488)
. +.++++++|.+++.++.++.+++.+++.+.
T Consensus 412 ~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~ 446 (480)
T PLN00164 412 RDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEM 446 (480)
T ss_pred cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 2 679999999999976222244444444433
No 171
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.13 E-value=0.055 Score=50.27 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=63.2
Q ss_pred EEEEEEeeeccccC--hHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh-----C-CcEEEeCccCHHHHHHHH
Q 011355 294 LVLGMAGRLVKDKG--HPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL-----G-TNVIVLGPLDQTRLAMFY 365 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg--~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l-----~-~~V~~~g~v~~~~l~~~~ 365 (488)
.+++..|.-.+.|. .+...+.++.+.+ .+++++++|..++.+..+++ . ..+.+.|..+-.|+..++
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~------~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li 196 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLA------RGARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALL 196 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHH------CCCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHH
Confidence 44445555444454 3566777777765 24678888876555444432 1 335567777788999999
Q ss_pred HhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCC
Q 011355 366 NAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLA 401 (488)
Q Consensus 366 ~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~ 401 (488)
+.||++|.+- + | .+--|.+.|+|+|+--.+
T Consensus 197 ~~~~l~I~~D----s-g-~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 197 ARADLVVTND----S-G-PMHLAAALGTPTVALFGP 226 (279)
T ss_pred HhCCEEEeeC----C-H-HHHHHHHcCCCEEEEECC
Confidence 9999999743 2 2 444467999999986433
No 172
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.01 E-value=0.19 Score=47.75 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=63.1
Q ss_pred CCcEEEEEEeeeccccCh--HHHHHHHHHhHhhccCCCCCeEEEEEeCCCc-hhHHhhh---CCcEEEeCccCHHHHHHH
Q 011355 291 NRSLVLGMAGRLVKDKGH--PLMFEALKQLLAENDTFRRSTVFLVAGDGPW-GARYRDL---GTNVIVLGPLDQTRLAMF 364 (488)
Q Consensus 291 ~~~~~i~~~Grl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~-~~~~~~l---~~~V~~~g~v~~~~l~~~ 364 (488)
+++.+++..|.-.+.|.. +...+.+..+.+ .+..+++.|.++. .+..+++ .++..+.|..+-.|+..+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~------~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~al 251 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA------RGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAAL 251 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH------CCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHH
Confidence 344677777765566765 456666666654 2456777754443 2333332 234567788888899999
Q ss_pred HHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEe
Q 011355 365 YNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMAT 398 (488)
Q Consensus 365 ~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~ 398 (488)
++.||++|..- +. .+-=|.|.|+|+|+-
T Consensus 252 i~~a~l~I~~D----Sg--p~HlAaa~g~P~i~l 279 (319)
T TIGR02193 252 LAGADAVVGVD----TG--LTHLAAALDKPTVTL 279 (319)
T ss_pred HHcCCEEEeCC----Ch--HHHHHHHcCCCEEEE
Confidence 99999999743 21 344478999999985
No 173
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=97.01 E-value=0.11 Score=47.84 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=85.5
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChH
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHP 309 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~ 309 (488)
+.+++++.+.+-.+...+.+.+ .|++. ++.++|..+=. ....... .. ..+ +......+..........-.+
T Consensus 123 ~~l~~~~~i~vRD~~S~~~l~~-~g~~~-~~~~~~D~af~--l~~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~~~~ 193 (286)
T PF04230_consen 123 RILSKADYISVRDEYSYELLKK-LGISG-NVKLVPDPAFL--LPPSYPD-ED-KSK---PKRNYISVSNSPSRNNEEYIE 193 (286)
T ss_pred HHHhCCCEEEECCHHHHHHHHH-cCCCC-CcEEEeCchhh--cCccccc-cc-ccc---cccceeeeccccchhhhhHHH
Confidence 4567789988888888886665 78765 77877765411 1111000 00 000 011101111111112233345
Q ss_pred HHHHHHHHhHhhccCCCCCeEEEEEeCCCchh---HH------hhh-CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCC
Q 011355 310 LMFEALKQLLAENDTFRRSTVFLVAGDGPWGA---RY------RDL-GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQ 379 (488)
Q Consensus 310 ~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~---~~------~~l-~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~e 379 (488)
.+.+.+..+.++. ..+.+......+... .. ... ..........+.+++..+++.||++|....+
T Consensus 194 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH-- 267 (286)
T PF04230_consen 194 EIAELIQRLLDKG----YKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH-- 267 (286)
T ss_pred HHHHHHHHhhccc----ceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH--
Confidence 5666777766644 445554444322111 11 111 1334455567899999999999999987764
Q ss_pred CCChHHHHHHHcCCcEEEeCC
Q 011355 380 GLDHTVLEAMLSGKPLMATRL 400 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~ 400 (488)
..+=|+++|+|+|+-+.
T Consensus 268 ----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 ----GAILALSLGVPVIAISY 284 (286)
T ss_pred ----HHHHHHHcCCCEEEEec
Confidence 46779999999998654
No 174
>PLN03004 UDP-glycosyltransferase
Probab=97.00 E-value=0.15 Score=50.62 Aligned_cols=190 Identities=14% Similarity=0.045 Sum_probs=102.4
Q ss_pred hhcCCccEEEEcChhhHH-HHHHHhc--CCCCcEEEecCCccCCCcCCC-cccchhhhhhhCCCCCCcEEEEEEeeecc-
Q 011355 230 KFFPKYAHHVATSDHCGD-VLKRIYM--IPEERVHVILNGVDEEVFKPD-VAMGKDFKKKFGIPENRSLVLGMAGRLVK- 304 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~-~~~~~~g--~~~~~i~vi~ngvd~~~~~~~-~~~~~~~r~~~~i~~~~~~~i~~~Grl~~- 304 (488)
..+.++|.+++.|-+..+ .+.+.+. ....++.-|..-+........ ........+-++-.+.++.+.+.+|+...
T Consensus 204 ~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~ 283 (451)
T PLN03004 204 KQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLF 283 (451)
T ss_pred HhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccC
Confidence 446778899988854433 2223231 111245555443211110000 00112233444433344477888888732
Q ss_pred -ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc-------hh-----HH-hh-hCCcEEEeCccCHHHHHHHHHhcC
Q 011355 305 -DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW-------GA-----RY-RD-LGTNVIVLGPLDQTRLAMFYNAID 369 (488)
Q Consensus 305 -~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~-------~~-----~~-~~-l~~~V~~~g~v~~~~l~~~~~~ad 369 (488)
.+....+..++... . ..+- ..+..... .+ .+ ++ .+.++.+.+|+|+.+ +++.++
T Consensus 284 ~~~q~~ela~gL~~s---~----~~Fl-W~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~---iL~H~~ 352 (451)
T PLN03004 284 SKEQVIEIAVGLEKS---G----QRFL-WVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP---VLNHKA 352 (451)
T ss_pred CHHHHHHHHHHHHHC---C----CCEE-EEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH---HhCCCc
Confidence 23344444444443 2 2222 33332110 01 01 11 136899999999775 678888
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeec-CCceeEeC-----C-CHHHHHHHHHHHHhc
Q 011355 370 IFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVG-TDMGYLFS-----P-QVESVKKALYGIWAD 434 (488)
Q Consensus 370 v~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~-~~~g~l~~-----~-d~~~la~~i~~ll~~ 434 (488)
+..+-++ -| -++++||+++|+|+|+....+ .. ..+.+ -+.|..++ . +.++++++|.+++.+
T Consensus 353 v~~FvTH--~G-~nS~lEal~~GVP~v~~P~~~DQ~~na-~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~ 424 (451)
T PLN03004 353 VGGFVTH--CG-WNSILEAVCAGVPMVAWPLYAEQRFNR-VMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE 424 (451)
T ss_pred cceEecc--Cc-chHHHHHHHcCCCEEeccccccchhhH-HHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC
Confidence 8444453 34 358999999999999975433 22 23333 36676664 3 789999999999986
No 175
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.94 E-value=0.22 Score=46.79 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=86.3
Q ss_pred cCCccEEEEcChhhHHHHHHHhcC-CCCcEEEec---CCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecccc-
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYMI-PEERVHVIL---NGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDK- 306 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g~-~~~~i~vi~---ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~K- 306 (488)
...+|.||++.++ +. ...++.... |.++.+... ..+..+..+++-.+ ++.+.+.+|.-...-
T Consensus 95 ~~~FDlvi~p~HD---------~~~~~~Nvl~t~ga~~~i~~~~l~---~a~~~~~~~~~~l~-~p~~avLIGG~s~~~~ 161 (311)
T PF06258_consen 95 PRPFDLVIVPEHD---------RLPRGPNVLPTLGAPNRITPERLA---EAAAAWAPRLAALP-RPRVAVLIGGDSKHYR 161 (311)
T ss_pred ccccCEEEECccc---------CcCCCCceEecccCCCcCCHHHHH---HHHHhhhhhhccCC-CCeEEEEECcCCCCcc
Confidence 3567888998765 22 223333322 333322111 11223334444222 335666777533322
Q ss_pred -Ch---HHHHHHHHHhHhhccCCCCCeEEEEEeCCCch----hHHhhh---CCcEEEeCccCHHHHHHHHHhcCEEEeCC
Q 011355 307 -GH---PLMFEALKQLLAENDTFRRSTVFLVAGDGPWG----ARYRDL---GTNVIVLGPLDQTRLAMFYNAIDIFVNPT 375 (488)
Q Consensus 307 -g~---~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~----~~~~~l---~~~V~~~g~v~~~~l~~~~~~adv~v~ps 375 (488)
+- ..+++.+..+.+.. ...+.|..+.... +.+++. ...+.+.+.-+..-+..+|+.||.++.+.
T Consensus 162 ~~~~~~~~l~~~l~~~~~~~-----~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~ 236 (311)
T PF06258_consen 162 WDEEDAERLLDQLAALAAAY-----GGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTE 236 (311)
T ss_pred cCHHHHHHHHHHHHHHHHhC-----CCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcC
Confidence 22 25667777777665 4788888864322 233332 25665555545556889999999999854
Q ss_pred CCCCCCChHHHHHHHcCCcEEEeCCCC
Q 011355 376 LRAQGLDHTVLEAMLSGKPLMATRLAS 402 (488)
Q Consensus 376 ~~~eg~~~~~lEAma~G~PVI~~~~~~ 402 (488)
++ -..+.||++.|+||.....++
T Consensus 237 ---DS-vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 237 ---DS-VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred ---cc-HHHHHHHHHcCCCEEEecCCC
Confidence 33 347899999999999988776
No 176
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.76 E-value=0.081 Score=52.51 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=82.3
Q ss_pred hhhhhhCCCCCCcEEEEEEeeec--cccChHHHHHHHHHhHhhccCCCCCeEEEEEeC--------CCc-------hhHH
Q 011355 281 DFKKKFGIPENRSLVLGMAGRLV--KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGD--------GPW-------GARY 343 (488)
Q Consensus 281 ~~r~~~~i~~~~~~~i~~~Grl~--~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~--------g~~-------~~~~ 343 (488)
++.+-++-.+.++.+.+.+|++. +.+....+..++.... ..+-.++-+. +.. ....
T Consensus 250 ~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~-------~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~ 322 (455)
T PLN02152 250 SYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGK-------RPFLWVITDKLNREAKIEGEEETEIEKIAGFR 322 (455)
T ss_pred HHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcC-------CCeEEEEecCcccccccccccccccccchhHH
Confidence 34555554444457788889864 3344555556555542 2233333221 010 1112
Q ss_pred hhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeecC-CceeEeC-
Q 011355 344 RDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVGT-DMGYLFS- 418 (488)
Q Consensus 344 ~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~-~~g~l~~- 418 (488)
+...++..+.+++|+.+ +++..++..+-++ -| .++++||+.+|+|+|+-...+-.. ..+.+. +.|+-+.
T Consensus 323 e~~~~~g~v~~W~PQ~~---iL~h~~vg~fvtH--~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~ 396 (455)
T PLN02152 323 HELEEVGMIVSWCSQIE---VLRHRAVGCFVTH--CG-WSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRE 396 (455)
T ss_pred HhccCCeEEEeeCCHHH---HhCCcccceEEee--CC-cccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeec
Confidence 23557788889999664 6777777555453 34 458999999999999975433110 122221 2344431
Q ss_pred ----C-CHHHHHHHHHHHHhc
Q 011355 419 ----P-QVESVKKALYGIWAD 434 (488)
Q Consensus 419 ----~-d~~~la~~i~~ll~~ 434 (488)
. +.+++++++.+++.+
T Consensus 397 ~~~~~~~~e~l~~av~~vm~~ 417 (455)
T PLN02152 397 NSEGLVERGEIRRCLEAVMEE 417 (455)
T ss_pred CcCCcCcHHHHHHHHHHHHhh
Confidence 2 689999999999976
No 177
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.76 E-value=0.34 Score=46.59 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=61.7
Q ss_pred cEEEEEEeeeccccCh--HHHHHHHHHhHhhccCCCCCeEEEEEeCCC--chhHHhhh----C-C-cEEEeCccCHHHHH
Q 011355 293 SLVLGMAGRLVKDKGH--PLMFEALKQLLAENDTFRRSTVFLVAGDGP--WGARYRDL----G-T-NVIVLGPLDQTRLA 362 (488)
Q Consensus 293 ~~~i~~~Grl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~--~~~~~~~l----~-~-~V~~~g~v~~~~l~ 362 (488)
+++++..|.-.+.|.. +...+.+..+.+ .+..+++.|... +.+..+++ . . .+.+.|..+-.|+.
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~------~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ 255 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHA------RGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLA 255 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHh------CCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHH
Confidence 3666677765566654 455566666654 346788888543 22222332 2 2 24578888888999
Q ss_pred HHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEe
Q 011355 363 MFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMAT 398 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~ 398 (488)
.+++.||++|..- + ..+-=|.|.|+|+|+-
T Consensus 256 ali~~a~l~Vs~D----S--Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 256 ALIDHARLFIGVD----S--VPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHhCCEEEecC----C--HHHHHHHHcCCCEEEE
Confidence 9999999999743 2 1455589999999985
No 178
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=96.71 E-value=0.021 Score=56.47 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=103.9
Q ss_pred EEEEEEeee-ccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEE
Q 011355 294 LVLGMAGRL-VKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFV 372 (488)
Q Consensus 294 ~~i~~~Grl-~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v 372 (488)
..++| |.- .-.||-+..++++.+. -+++-.|.+... ....+..-|.-+|.++.+|+..+++.+.++|
T Consensus 279 ~AlVy-GK~~~~w~~k~~~l~~l~~~--------~eih~tV~~~~~---~~~~~P~~V~NHG~l~~~ef~~lL~~akvfi 346 (559)
T PF15024_consen 279 QALVY-GKERYMWKGKEKYLDVLHKY--------MEIHGTVYDEPQ---RPPNVPSFVKNHGILSGDEFQQLLRKAKVFI 346 (559)
T ss_pred eeEEE-ccchhhhcCcHHHHHHHHhh--------cEEEEEeccCCC---CCcccchhhhhcCcCCHHHHHHHHHhhhEee
Confidence 33433 543 3457777788777654 466766665432 2223445688899999999999999999999
Q ss_pred eCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc--------------c---------eeecCCceeEeCC-CHHHHHHHH
Q 011355 373 NPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG--------------S---------VIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 373 ~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~--------------e---------~v~~~~~g~l~~~-d~~~la~~i 428 (488)
....-.|| =+.+||++.|+|.|-........ + ........+.|+- |.+++.++|
T Consensus 347 GlGfP~Eg--PaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Av 424 (559)
T PF15024_consen 347 GLGFPYEG--PAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAV 424 (559)
T ss_pred ecCCCCCC--CChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHH
Confidence 86542354 38999999999998765432110 1 0122334667777 999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 429 YGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 429 ~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
.+++++.. .-++--.|+.+.+.+++..+++.
T Consensus 425 k~il~~~v----------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 425 KAILATPV----------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHHhcCC----------CCcCCcccCHHHHHHHHHHHHHh
Confidence 99998821 23455568999999999777754
No 179
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.031 Score=57.45 Aligned_cols=130 Identities=19% Similarity=0.243 Sum_probs=91.5
Q ss_pred CCCcEEEEEEeeeccccChHHHHHHHHHhHhhcc-CCCCCeEEEEEeC-CCchhH----Hhh------h---CCcEEEeC
Q 011355 290 ENRSLVLGMAGRLVKDKGHPLMFEALKQLLAEND-TFRRSTVFLVAGD-GPWGAR----YRD------L---GTNVIVLG 354 (488)
Q Consensus 290 ~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~-~~~~~~~l~ivG~-g~~~~~----~~~------l---~~~V~~~g 354 (488)
++. +.++++-|+..+|...+.+.-...+..... +..|.+.+++.|+ .|.... ++. . ..+|.|+.
T Consensus 485 p~~-lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~ 563 (750)
T COG0058 485 PNA-LFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLP 563 (750)
T ss_pred CCc-ceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeC
Confidence 344 888899999999988765543333332220 1116677888886 232211 111 1 25689998
Q ss_pred ccCHHHHHHHHHhcCEEEeCCCC-CCCCChHHHHHHHcCCcEEEeCCCCcccceee--cCCceeEeCCCH
Q 011355 355 PLDQTRLAMFYNAIDIFVNPTLR-AQGLDHTVLEAMLSGKPLMATRLASIVGSVIV--GTDMGYLFSPQV 421 (488)
Q Consensus 355 ~v~~~~l~~~~~~adv~v~ps~~-~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~--~~~~g~l~~~d~ 421 (488)
..+-+-...++.+|||-.+.|+. -|..|..-+-++..|.+.|+|--|... |+.+ .+++|++|..+.
T Consensus 564 nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanv-Ei~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 564 NYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANV-EIYEHVGGENGWIFGETV 632 (750)
T ss_pred CCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHH-HHHHhcCCCceEEeCCch
Confidence 87766777889999998886652 477788889999999999999888887 7765 889999998633
No 180
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=96.48 E-value=0.67 Score=46.41 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=55.7
Q ss_pred CcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---cee-ecCCceeEeC----C
Q 011355 348 TNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVI-VGTDMGYLFS----P 419 (488)
Q Consensus 348 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v-~~~~~g~l~~----~ 419 (488)
.++.+.+|+|+.+ +++...+..+-++ -| -++++||+.+|+|+|+-...+-.. ..+ +.-+.|..++ .
T Consensus 338 rg~vv~~W~PQ~~---iL~h~~vg~FitH--~G-~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~ 411 (481)
T PLN02992 338 RGFVVPSWAPQAE---ILAHQAVGGFLTH--CG-WSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEV 411 (481)
T ss_pred CCEEEeecCCHHH---HhCCcccCeeEec--Cc-hhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCc
Confidence 4688999999775 5566666333342 34 458999999999999976543110 233 2445666663 2
Q ss_pred -CHHHHHHHHHHHHhc
Q 011355 420 -QVESVKKALYGIWAD 434 (488)
Q Consensus 420 -d~~~la~~i~~ll~~ 434 (488)
+.++++++|.+++.+
T Consensus 412 ~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 412 ISRSKIEALVRKVMVE 427 (481)
T ss_pred ccHHHHHHHHHHHhcC
Confidence 789999999999976
No 181
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.95 E-value=0.055 Score=56.41 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=97.3
Q ss_pred CCCCCcEEEEEEeeeccccChHH-HHHHHH---HhHhhccCCCCCeEEEEEeCC-CchhH----Hhh-------------
Q 011355 288 IPENRSLVLGMAGRLVKDKGHPL-MFEALK---QLLAENDTFRRSTVFLVAGDG-PWGAR----YRD------------- 345 (488)
Q Consensus 288 i~~~~~~~i~~~Grl~~~Kg~~~-ll~a~~---~l~~~~~~~~~~~~l~ivG~g-~~~~~----~~~------------- 345 (488)
+.++. +.++++-|+..+|...+ ++..+. ++++....-..+..+++.|+. |.... ++.
T Consensus 539 ldp~s-Lfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~ 617 (815)
T PRK14986 539 VNPKA-LFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQ 617 (815)
T ss_pred cCccc-ceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChh
Confidence 34444 78889999999999887 555544 444321000024788888863 32211 111
Q ss_pred hCC--cEEEeCccCHHHHHHHHHhcCEEEeCCC-CCCCCChHHHHHHHcCCcEEEeCCCCcccceeec--CCceeEeCCC
Q 011355 346 LGT--NVIVLGPLDQTRLAMFYNAIDIFVNPTL-RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG--TDMGYLFSPQ 420 (488)
Q Consensus 346 l~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~-~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~--~~~g~l~~~d 420 (488)
..+ +|.|+...+-+--..++.+||+-.+-|+ --|..|..-+=+|..|.+.+++--|... |+.++ +++|+.|..+
T Consensus 618 v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nv-Ei~e~vG~eN~~~fG~~ 696 (815)
T PRK14986 618 IGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANV-EMLEHVGEENIFIFGNT 696 (815)
T ss_pred hcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchh-HHHHhcCCCcEEEeCCC
Confidence 123 6999988777777889999999998666 2477788889999999999999888887 76665 8899999876
Q ss_pred HHHHHHH
Q 011355 421 VESVKKA 427 (488)
Q Consensus 421 ~~~la~~ 427 (488)
++++.+.
T Consensus 697 ~~ev~~~ 703 (815)
T PRK14986 697 AEEVEAL 703 (815)
T ss_pred HHHHHHH
Confidence 6666654
No 182
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=95.65 E-value=0.68 Score=44.96 Aligned_cols=189 Identities=14% Similarity=0.161 Sum_probs=113.6
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccc--hhhhhhhCCCCCCcEEEEEEeeecccc-
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMG--KDFKKKFGIPENRSLVLGMAGRLVKDK- 306 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~--~~~r~~~~i~~~~~~~i~~~Grl~~~K- 306 (488)
......|.+.+.+......+.+.+|+..+++..++.+-....+....... ......+++|.++ .+|+|.-.+.+..
T Consensus 144 ~~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k-~vIlyaPTfr~~~~ 222 (388)
T COG1887 144 YVRNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDK-KVILYAPTFRDNDV 222 (388)
T ss_pred eeeeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccC-ceEEecCCccCCcc
Confidence 44567888899888888888888998888777766554433333322221 2234556677676 7788998887665
Q ss_pred --C---hHHHH--HHHHHhHhhccCCCCCeEEEEEeCCCchh-HHh---hhCCcEEEeCccCHHHHHHHHHhcCEEEeCC
Q 011355 307 --G---HPLMF--EALKQLLAENDTFRRSTVFLVAGDGPWGA-RYR---DLGTNVIVLGPLDQTRLAMFYNAIDIFVNPT 375 (488)
Q Consensus 307 --g---~~~ll--~a~~~l~~~~~~~~~~~~l~ivG~g~~~~-~~~---~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps 375 (488)
| ....+ +.+.+...+ .+..++ +=.+|... ... +..+.+..... ..++.++|..+|++|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~-----~~~~ii-~k~Hp~is~~~~~~~~~~~~~~~vs~--~~di~dll~~sDiLIT-- 292 (388)
T COG1887 223 LIGTQFFNLDIDIEKLKEKLGE-----NEYVII-VKPHPLISDKIDKRYALDDFVLDVSD--NADINDLLLVSDILIT-- 292 (388)
T ss_pred ccchhhhhhhhhHHHHHHhhcc-----CCeEEE-EecChhhhhhhhhhhhccceeEeccc--chhHHHHHhhhCEEEe--
Confidence 2 22222 223222221 244444 33344321 111 12232333333 5899999999999995
Q ss_pred CCCCCCChHHHHHHHcCCcEEEeCCCCccc----ce---eecCCceeEeCCCHHHHHHHHHHHHhc
Q 011355 376 LRAQGLDHTVLEAMLSGKPLMATRLASIVG----SV---IVGTDMGYLFSPQVESVKKALYGIWAD 434 (488)
Q Consensus 376 ~~~eg~~~~~lEAma~G~PVI~~~~~~~~~----e~---v~~~~~g~l~~~d~~~la~~i~~ll~~ 434 (488)
.++.+..|+|...+|||..-.....- .. ......|-++. +.+++.++|.....+
T Consensus 293 ----DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~-~~~~li~ai~~~~~~ 353 (388)
T COG1887 293 ----DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE-TQEELIDAIKPYDED 353 (388)
T ss_pred ----echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc-cHHHHHHHHHhhhcc
Confidence 24669999999999999863322100 00 12223455555 788999999888875
No 183
>PLN03015 UDP-glucosyl transferase
Probab=95.56 E-value=2.9 Score=41.77 Aligned_cols=78 Identities=21% Similarity=0.095 Sum_probs=50.6
Q ss_pred EEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---cee-ecCCceeEeC------C
Q 011355 350 VIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVI-VGTDMGYLFS------P 419 (488)
Q Consensus 350 V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v-~~~~~g~l~~------~ 419 (488)
+.+.+|+|+.++ ++...+..+-++ -| -++++||+.+|+|+|+-..-+-.. ..+ +.-+.|.-+. .
T Consensus 337 l~v~~W~PQ~~v---L~h~~vg~fvtH--~G-wnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~ 410 (470)
T PLN03015 337 LVVTQWAPQVEI---LSHRSIGGFLSH--CG-WSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKV 410 (470)
T ss_pred eEEEecCCHHHH---hccCccCeEEec--CC-chhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCc
Confidence 677899997765 445555333343 34 358999999999999976533110 112 2334455442 2
Q ss_pred -CHHHHHHHHHHHHh
Q 011355 420 -QVESVKKALYGIWA 433 (488)
Q Consensus 420 -d~~~la~~i~~ll~ 433 (488)
+.++++++|.+++.
T Consensus 411 v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 411 IGREEVASLVRKIVA 425 (470)
T ss_pred cCHHHHHHHHHHHHc
Confidence 78999999999995
No 184
>PLN02534 UDP-glycosyltransferase
Probab=95.52 E-value=3 Score=42.00 Aligned_cols=190 Identities=14% Similarity=0.076 Sum_probs=96.0
Q ss_pred CCccEEEEcChhhHH-HHHHHhcC-CCCcEEEecCCccCCC-----cC-CC--cccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 233 PKYAHHVATSDHCGD-VLKRIYMI-PEERVHVILNGVDEEV-----FK-PD--VAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~-~~~~~~g~-~~~~i~vi~ngvd~~~-----~~-~~--~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
..++.|++.|-...+ .+.+.+.- -..++..|..-+.... .. .. ..+....-+-++-.+.++.+.+.+|+.
T Consensus 214 ~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~ 293 (491)
T PLN02534 214 STAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSL 293 (491)
T ss_pred ccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEeccc
Confidence 457788888855444 22222210 1135665554332110 00 00 001123444454444445777788887
Q ss_pred ccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCC--Cc-h-----hHHh-h-hCCcEEEeCccCHHHHHHHHHhcCEEE
Q 011355 303 VKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDG--PW-G-----ARYR-D-LGTNVIVLGPLDQTRLAMFYNAIDIFV 372 (488)
Q Consensus 303 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g--~~-~-----~~~~-~-l~~~V~~~g~v~~~~l~~~~~~adv~v 372 (488)
.. -..+.+.+.+.-|.... ..+-.++-.++ +. . +.+. . .+.++.+.|++++.+ ++...++..
T Consensus 294 ~~-~~~~q~~e~a~gl~~~~----~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~---iL~h~~v~~ 365 (491)
T PLN02534 294 CR-LVPSQLIELGLGLEASK----KPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVL---ILSHPAIGG 365 (491)
T ss_pred cc-CCHHHHHHHHHHHHhCC----CCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHH---HhcCCccce
Confidence 52 22333444444443333 33333333111 11 0 1112 2 246788889999754 677777744
Q ss_pred eCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---c-eeecCCceeEe--------------C-C-CHHHHHHHHHHHH
Q 011355 373 NPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---S-VIVGTDMGYLF--------------S-P-QVESVKKALYGIW 432 (488)
Q Consensus 373 ~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e-~v~~~~~g~l~--------------~-~-d~~~la~~i~~ll 432 (488)
+-++ -| .++++||+++|+|+|+-...+-.. . +++.-+.|+-+ . . +.+++++++.+++
T Consensus 366 fvtH--~G-~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m 442 (491)
T PLN02534 366 FLTH--CG-WNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLM 442 (491)
T ss_pred EEec--Cc-cHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHh
Confidence 4342 34 469999999999999976533110 0 11111122211 0 1 6899999999999
Q ss_pred h
Q 011355 433 A 433 (488)
Q Consensus 433 ~ 433 (488)
.
T Consensus 443 ~ 443 (491)
T PLN02534 443 D 443 (491)
T ss_pred c
Confidence 6
No 185
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.37 E-value=0.12 Score=53.95 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=96.4
Q ss_pred CCCCCcEEEEEEeeeccccChHH-HHHH---HHHhHhhccCCCCCeEEEEEeCC-CchhHHhh-----------------
Q 011355 288 IPENRSLVLGMAGRLVKDKGHPL-MFEA---LKQLLAENDTFRRSTVFLVAGDG-PWGARYRD----------------- 345 (488)
Q Consensus 288 i~~~~~~~i~~~Grl~~~Kg~~~-ll~a---~~~l~~~~~~~~~~~~l~ivG~g-~~~~~~~~----------------- 345 (488)
+.++. +..+++-|+..+|...+ ++.. +.++++....-..+..+++.|+. |....-++
T Consensus 526 ldp~s-lfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~ 604 (797)
T cd04300 526 VDPDS-LFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPD 604 (797)
T ss_pred cCCCc-cEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChh
Confidence 34555 78889999999999887 5554 44444321000023778888863 32211111
Q ss_pred hCC--cEEEeCccCHHHHHHHHHhcCEEEeCCC-CCCCCChHHHHHHHcCCcEEEeCCCCcccceeec--CCceeEeCCC
Q 011355 346 LGT--NVIVLGPLDQTRLAMFYNAIDIFVNPTL-RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG--TDMGYLFSPQ 420 (488)
Q Consensus 346 l~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~-~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~--~~~g~l~~~d 420 (488)
..+ +|.|+...+-+--..++.+||+-.+-|+ -.|..|..-+=+|..|.+.++|--|... |+.++ ++++++|-.+
T Consensus 605 v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanv-Ei~e~vG~eN~fiFG~~ 683 (797)
T cd04300 605 VGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV-EIAEEVGEENIFIFGLT 683 (797)
T ss_pred cCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhH-HHHHHhCcCcEEEeCCC
Confidence 123 6999988777777889999999988665 2477788889999999999999888877 77665 7899999876
Q ss_pred HHHHHHH
Q 011355 421 VESVKKA 427 (488)
Q Consensus 421 ~~~la~~ 427 (488)
++++.+.
T Consensus 684 ~~ev~~~ 690 (797)
T cd04300 684 AEEVEAL 690 (797)
T ss_pred HHHHHHH
Confidence 6666544
No 186
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=95.36 E-value=0.15 Score=42.14 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=68.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQL 155 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 155 (488)
|||+++.+. .||..+. +++.|.+. .|+++++|.....- .|+.....-.+
T Consensus 1 M~ILlle~y------~ggSHk~---~~~~L~~~~~~~~~lltLP~r~w---------------------~WRmRg~AL~~ 50 (168)
T PF12038_consen 1 MRILLLEPY------YGGSHKQ---WADGLAAHSEHEWTLLTLPARKW---------------------HWRMRGAALYF 50 (168)
T ss_pred CeEEEEccc------cccCHHH---HHHHHHHhccCCEEEEEcCCCcc---------------------ccccCCCHHHH
Confidence 899999973 4666654 33444333 58999998854211 12211111111
Q ss_pred HHHhcCCCCCcEEEeCCcc-hHHhhh-----ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhH-HHHHHHHHHHHHH
Q 011355 156 QTQNSTGKPFDVIHTESVG-LRHTRA-----RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQA-YALAERASKVVEE 228 (488)
Q Consensus 156 ~~~~~~~~~~Dvv~~~~~~-~~~~~~-----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 228 (488)
.........+|+|++.+.. +..+++ ...| .++.+|+.-..+ |..+.. +...-.+..+
T Consensus 51 a~~~~~~~~~dll~aTsmldLa~l~gL~p~l~~~p-~ilYFHENQl~Y------------P~~~~~~rd~~~~~~ni--- 114 (168)
T PF12038_consen 51 AQQIPLSHSYDLLFATSMLDLATLRGLRPDLANVP-KILYFHENQLAY------------PVSPGQERDFQYGMNNI--- 114 (168)
T ss_pred hhccccccCCCEEEeeccccHHHHHhhccCCCCCC-EEEEEecCcccC------------CCCCCccccccHHHHHH---
Confidence 1222222278999998742 222221 2446 899999854332 211111 1111112222
Q ss_pred hhhcCCccEEEEcChhhHHHHHH
Q 011355 229 VKFFPKYAHHVATSDHCGDVLKR 251 (488)
Q Consensus 229 ~~~~~~~d~ii~~S~~~~~~~~~ 251 (488)
...-.||.|+.+|.+.++.+.+
T Consensus 115 -~saLaAD~v~FNS~~nr~sFL~ 136 (168)
T PF12038_consen 115 -YSALAADRVVFNSAFNRDSFLD 136 (168)
T ss_pred -HHHHhceeeeecchhhHHHHHH
Confidence 2234799999999998887765
No 187
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=95.22 E-value=0.83 Score=47.29 Aligned_cols=192 Identities=19% Similarity=0.254 Sum_probs=111.4
Q ss_pred CCccEEEEcChhhHHHHHH-----HhcCCCCcEEEecCCccCCCcCCC--cc---------------------------c
Q 011355 233 PKYAHHVATSDHCGDVLKR-----IYMIPEERVHVILNGVDEEVFKPD--VA---------------------------M 278 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~-----~~g~~~~~i~vi~ngvd~~~~~~~--~~---------------------------~ 278 (488)
..+..+-.+|+-..+.+++ ++.+.+.++.-+-|||.....-.. +. +
T Consensus 330 ~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~d 409 (713)
T PF00343_consen 330 RGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFAD 409 (713)
T ss_dssp HCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCC
T ss_pred HhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhC
Confidence 4556778888776666543 455667889999999977544211 10 0
Q ss_pred -------------------chhhhhhhC--CCCCCcEEEEEEeeeccccChHH-HH---HHHHHhHhhccCCCCCeEEEE
Q 011355 279 -------------------GKDFKKKFG--IPENRSLVLGMAGRLVKDKGHPL-MF---EALKQLLAENDTFRRSTVFLV 333 (488)
Q Consensus 279 -------------------~~~~r~~~~--i~~~~~~~i~~~Grl~~~Kg~~~-ll---~a~~~l~~~~~~~~~~~~l~i 333 (488)
...++++.+ +.++. +..+++-|+..+|...+ ++ +-+.++++.-..-..++.+++
T Consensus 410 d~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~s-lfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IF 488 (713)
T PF00343_consen 410 DEEFQEELREVKQENKERLAEYIKKRTGVELDPDS-LFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIF 488 (713)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTS-EEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcch-hhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEE
Confidence 011222333 44555 78889999999999877 33 444455543100003588999
Q ss_pred EeCC-Cchh----HHhh-------------hCC--cEEEeCccCHHHHHHHHHhcCEEEeCCCC-CCCCChHHHHHHHcC
Q 011355 334 AGDG-PWGA----RYRD-------------LGT--NVIVLGPLDQTRLAMFYNAIDIFVNPTLR-AQGLDHTVLEAMLSG 392 (488)
Q Consensus 334 vG~g-~~~~----~~~~-------------l~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~~-~eg~~~~~lEAma~G 392 (488)
.|+. |... .++. +.+ +|.|+...+-+--..++.++||-...|++ .|..|..-+=+|..|
T Consensus 489 aGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NG 568 (713)
T PF00343_consen 489 AGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNG 568 (713)
T ss_dssp E----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT
T ss_pred eccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCC
Confidence 9962 3221 1111 123 69999987777788899999999986663 488899999999999
Q ss_pred CcEEEeCCCCcccceeec--CCceeEeCCCHHHHHH
Q 011355 393 KPLMATRLASIVGSVIVG--TDMGYLFSPQVESVKK 426 (488)
Q Consensus 393 ~PVI~~~~~~~~~e~v~~--~~~g~l~~~d~~~la~ 426 (488)
.+.+++--|... |+.+. .++.++|-.+.+++.+
T Consensus 569 aL~lstlDG~ni-Ei~e~vG~eN~fiFG~~~~ev~~ 603 (713)
T PF00343_consen 569 ALNLSTLDGWNI-EIAEAVGEENIFIFGLTAEEVEE 603 (713)
T ss_dssp -EEEEESSTCHH-HHHHHH-GGGSEEES-BHHHHHH
T ss_pred CeEEecccchhH-HHHHhcCCCcEEEcCCCHHHHHH
Confidence 999999888877 66543 4678888766666544
No 188
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=94.92 E-value=0.082 Score=54.97 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=95.9
Q ss_pred CCCCCcEEEEEEeeeccccChHH-HHHHHHHhHh--hccC-CCCCeEEEEEeCC-CchhHHhh-----------------
Q 011355 288 IPENRSLVLGMAGRLVKDKGHPL-MFEALKQLLA--ENDT-FRRSTVFLVAGDG-PWGARYRD----------------- 345 (488)
Q Consensus 288 i~~~~~~~i~~~Grl~~~Kg~~~-ll~a~~~l~~--~~~~-~~~~~~l~ivG~g-~~~~~~~~----------------- 345 (488)
+.++. +..+++-|+..+|...+ ++..+..+.+ ..++ ...+..+++.|+. |....-++
T Consensus 525 ldp~s-lfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~ 603 (798)
T PRK14985 525 INPQA-IFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPL 603 (798)
T ss_pred cCchh-cchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChh
Confidence 44444 77888999999999877 6555443332 1210 0023788888863 32211111
Q ss_pred hCC--cEEEeCccCHHHHHHHHHhcCEEEeCCC-CCCCCChHHHHHHHcCCcEEEeCCCCcccceeec--CCceeEeCCC
Q 011355 346 LGT--NVIVLGPLDQTRLAMFYNAIDIFVNPTL-RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG--TDMGYLFSPQ 420 (488)
Q Consensus 346 l~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~-~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~--~~~g~l~~~d 420 (488)
..+ +|.|+...+-+--..++.+||+-..-|+ -.|..|..-+=+|..|.+.++|--|... |+.++ +++|+.|-.+
T Consensus 604 v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanv-Ei~e~vG~eN~f~fG~~ 682 (798)
T PRK14985 604 VGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANV-EIAEQVGEENIFIFGHT 682 (798)
T ss_pred hCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHH-HHHHHhCcCcEEEeCCC
Confidence 123 6999998777778889999999988665 2477788889999999999999888877 66654 7899999876
Q ss_pred HHHHHHH
Q 011355 421 VESVKKA 427 (488)
Q Consensus 421 ~~~la~~ 427 (488)
++++.+.
T Consensus 683 ~~ev~~~ 689 (798)
T PRK14985 683 VEQVKAL 689 (798)
T ss_pred HHHHHHH
Confidence 6666554
No 189
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=94.88 E-value=0.45 Score=48.37 Aligned_cols=133 Identities=21% Similarity=0.164 Sum_probs=76.6
Q ss_pred EEEEEEeeecc-----ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchh-HHhhh----CCcEEEeCccCHHHHHH
Q 011355 294 LVLGMAGRLVK-----DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGA-RYRDL----GTNVIVLGPLDQTRLAM 363 (488)
Q Consensus 294 ~~i~~~Grl~~-----~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~-~~~~l----~~~V~~~g~v~~~~l~~ 363 (488)
.+++..|+... .+-...+..++..+ +++.++..=.++... ..+.+ ..+|...+|+|+.++.
T Consensus 279 vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~--------~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~ll- 349 (496)
T KOG1192|consen 279 VVYISFGSMVNSADLPEEQKKELAKALESL--------QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLL- 349 (496)
T ss_pred eEEEECCcccccccCCHHHHHHHHHHHHhC--------CCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHh-
Confidence 67777888753 34445566666665 355555444332221 12223 3479999999988766
Q ss_pred HHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC--CHHHHHHHHHHHHhcCHH
Q 011355 364 FYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP--QVESVKKALYGIWADGRE 437 (488)
Q Consensus 364 ~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~--d~~~la~~i~~ll~~~~~ 437 (488)
+...-+-.+-++ .|++ .++|++.+|+|+|+...-+ ....+...+..+.+... +.+++.+++..++.+ ++
T Consensus 350 -l~H~~v~~FvTH--gG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~-~~ 424 (496)
T KOG1192|consen 350 -LDHPAVGGFVTH--GGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILEN-EE 424 (496)
T ss_pred -cCCCcCcEEEEC--Cccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcC-hH
Confidence 333333333343 4665 5599999999999653322 22123344455555443 334488899999887 54
Q ss_pred HHH
Q 011355 438 VLE 440 (488)
Q Consensus 438 ~~~ 440 (488)
..+
T Consensus 425 y~~ 427 (496)
T KOG1192|consen 425 YKE 427 (496)
T ss_pred HHH
Confidence 433
No 190
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.67 E-value=0.63 Score=42.92 Aligned_cols=84 Identities=23% Similarity=0.286 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc------hhHHhhh--CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW------GARYRDL--GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA 378 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~------~~~~~~l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~ 378 (488)
....+++.+..+.+.. |+.+++|-- +|. ...+.++ ..++.+... .-++.+++..||.++.-+
T Consensus 138 ~~~~~~~~l~~~~~~~----p~~~lvvK~-HP~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ll~~s~~Vvtin--- 207 (269)
T PF05159_consen 138 SQADFLDMLESFAKEN----PDAKLVVKP-HPDERGGNKYSYLEELPNLPNVVIIDD--DVNLYELLEQSDAVVTIN--- 207 (269)
T ss_pred cHhHHHHHHHHHHHHC----CCCEEEEEE-CchhhCCCChhHhhhhhcCCCeEEECC--CCCHHHHHHhCCEEEEEC---
Confidence 4556777777777777 777776554 332 1223333 245555544 447889999999988633
Q ss_pred CCCChHHHHHHHcCCcEEEeCCCCc
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLASI 403 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~~~ 403 (488)
+.+-+||+.+|+||++...+-.
T Consensus 208 ---StvGlEAll~gkpVi~~G~~~Y 229 (269)
T PF05159_consen 208 ---STVGLEALLHGKPVIVFGRAFY 229 (269)
T ss_pred ---CHHHHHHHHcCCceEEecCccc
Confidence 3478999999999999765443
No 191
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.65 E-value=0.16 Score=53.00 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=96.2
Q ss_pred CCCCCcEEEEEEeeeccccChHH-HHHHHH---HhHhhccCCCCCeEEEEEeCC-CchhHHhh-----------------
Q 011355 288 IPENRSLVLGMAGRLVKDKGHPL-MFEALK---QLLAENDTFRRSTVFLVAGDG-PWGARYRD----------------- 345 (488)
Q Consensus 288 i~~~~~~~i~~~Grl~~~Kg~~~-ll~a~~---~l~~~~~~~~~~~~l~ivG~g-~~~~~~~~----------------- 345 (488)
+.++. +..+++-|+..+|...+ ++..+. ++++.-..-..+..+++.|+. |....-++
T Consensus 523 ldp~s-lfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~ 601 (794)
T TIGR02093 523 VDPNS-IFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPA 601 (794)
T ss_pred cCccc-cchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChh
Confidence 34444 77788999999999877 555544 443321000025688888863 32211111
Q ss_pred hCC--cEEEeCccCHHHHHHHHHhcCEEEeCCC-CCCCCChHHHHHHHcCCcEEEeCCCCcccceeec--CCceeEeCCC
Q 011355 346 LGT--NVIVLGPLDQTRLAMFYNAIDIFVNPTL-RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG--TDMGYLFSPQ 420 (488)
Q Consensus 346 l~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~-~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~--~~~g~l~~~d 420 (488)
..+ +|.|+...+-+--..++.+||+-.+-|+ -.|..|..-+=+|..|.+.|+|--|... |+.++ ++++++|-.+
T Consensus 602 v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanv-Ei~e~vG~eN~fiFG~~ 680 (794)
T TIGR02093 602 VGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV-EIREEVGAENIFIFGLT 680 (794)
T ss_pred hCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhH-HHHHHhCcccEEEcCCC
Confidence 123 6999998777778889999999988666 2477788889999999999999888877 77665 7899999877
Q ss_pred HHHHHHH
Q 011355 421 VESVKKA 427 (488)
Q Consensus 421 ~~~la~~ 427 (488)
++++.+.
T Consensus 681 ~~ev~~~ 687 (794)
T TIGR02093 681 VEEVEAL 687 (794)
T ss_pred HHHHHHH
Confidence 7766654
No 192
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.33 E-value=0.41 Score=43.48 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=58.2
Q ss_pred CCcEEEEEEeeeccccChH--HHHHHHHHhHhhccCCCCCeEEEEEeCCCc--hhHHhhhC-----CcEEEeCccCHHHH
Q 011355 291 NRSLVLGMAGRLVKDKGHP--LMFEALKQLLAENDTFRRSTVFLVAGDGPW--GARYRDLG-----TNVIVLGPLDQTRL 361 (488)
Q Consensus 291 ~~~~~i~~~Grl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~--~~~~~~l~-----~~V~~~g~v~~~~l 361 (488)
+++.+++..|.-.+.|... ...+.+..+.++ ...++++|...+ .+..+.+. ..+.+.|..+-.|+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~------~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKER------GYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCC------T-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhh------CceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHH
Confidence 4447777888777777754 355555555432 367888887665 23332321 26788898888999
Q ss_pred HHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEe
Q 011355 362 AMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMAT 398 (488)
Q Consensus 362 ~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~ 398 (488)
..+++.||++|.+- + ..+-=|.|.|+|+|+-
T Consensus 178 ~ali~~a~~~I~~D----t--g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADLVIGND----T--GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSEEEEES----S--HHHHHHHHTT--EEEE
T ss_pred HHHHhcCCEEEecC----C--hHHHHHHHHhCCEEEE
Confidence 99999999999843 2 1455599999999986
No 193
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=93.81 E-value=0.46 Score=40.28 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=31.1
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCC
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNG 266 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ng 266 (488)
+.-+.+|..++.|+.+++.+.+ .|++++++.+.+-+
T Consensus 133 W~~~~~D~y~Vase~~~~~l~~-~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 133 WIHPGVDRYFVASEEVKEELIE-RGIPPERIHVTGIP 168 (169)
T ss_pred eecCCCCEEEECCHHHHHHHHH-cCCChhHEEEeCcc
Confidence 4457899999999999999999 89999999987543
No 194
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=92.78 E-value=0.62 Score=43.74 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC-cEEEeCCCCcc-cceeecCCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK-PLMATRLASIV-GSVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~-PVI~~~~~~~~-~e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
..+..+.|+.+...+.|.-. ..+..-++|||++|| |||.++.--.+ ++++.=....+.++. +..++.+.|+
T Consensus 227 ~~~~~~~l~~S~FCL~p~G~-~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCPRGD-GPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred chHHHHhcccCeEEEECCCC-CcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHh
Confidence 45688999999999998743 346889999999996 88887643333 245544566777765 5555555443
No 195
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.48 E-value=11 Score=34.37 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=66.8
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhC---CcE-EEeCccCHHHHHHHHHhcC
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLG---TNV-IVLGPLDQTRLAMFYNAID 369 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~---~~V-~~~g~v~~~~l~~~~~~ad 369 (488)
-+++..|+ |.+..+.. ... . ..+...+......-+...+++ .++ -..|..+.+.=..+++...
T Consensus 131 ~i~lttG~----k~l~~f~~----~~~-~----~~~~~RvLP~~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~ 197 (256)
T TIGR00715 131 RVFLTAGA----SWLSHFSL----SQD-E----AVVFVRVLPYPQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYR 197 (256)
T ss_pred cEEEecCc----chHHHHhh----ccC-C----ceEEEEECCCchhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcC
Confidence 36667773 55555533 111 1 245555554332333444432 344 4457677666677777555
Q ss_pred E--EEeC-CCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHH
Q 011355 370 I--FVNP-TLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIW 432 (488)
Q Consensus 370 v--~v~p-s~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll 432 (488)
+ +|.= |-...|+.-++--|+.+|+|||.-+-+..+. .+-.+. +.+++.+.+.+++
T Consensus 198 i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~-------~~~~~~-~~~el~~~l~~~~ 255 (256)
T TIGR00715 198 IDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIP-------GVAIFD-DISQLNQFVARLL 255 (256)
T ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC-------CCccCC-CHHHHHHHHHHhc
Confidence 5 4441 2111255678888999999999988765431 112344 7888888777654
No 196
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=90.91 E-value=2 Score=40.97 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=69.0
Q ss_pred chhhhhhhCCC---CCCcEEEEEEeeeccccC-hHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh---------
Q 011355 279 GKDFKKKFGIP---ENRSLVLGMAGRLVKDKG-HPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD--------- 345 (488)
Q Consensus 279 ~~~~r~~~~i~---~~~~~~i~~~Grl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~--------- 345 (488)
+..+.+++|++ ++. +.+..++ ..+. +..+++++.... ..+.++|.++ .-...++.
T Consensus 168 ~~~~~~~lg~~~~~~~~-~~vslF~---Ye~~~l~~ll~~~~~~~-------~pv~llvp~g-~~~~~~~~~~~~~~~~~ 235 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGA-LRVSLFC---YENAALASLLDAWAASP-------KPVHLLVPEG-RALNSLAAWLGDALLQA 235 (374)
T ss_pred HHHHHHHcCCCCCCCCC-eEEEEEe---CCchHHHHHHHHHhcCC-------CCeEEEecCC-ccHHHHHHHhccccccC
Confidence 45677788885 333 4443322 3333 667777776442 4567766664 32222211
Q ss_pred ------hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCC
Q 011355 346 ------LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRL 400 (488)
Q Consensus 346 ------l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~ 400 (488)
-.-.+++++++++++...++-.||+-+. ++|- +++=|+.+|+|.|=.-.
T Consensus 236 g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfV---RGED---SfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 236 GDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFV---RGED---SFVRAQWAGKPFVWHIY 290 (374)
T ss_pred ccccccCCeEEEECCCCCHHHHHHHHHhCccceE---ecch---HHHHHHHhCCCceEecC
Confidence 1135888999999999999999999555 6776 78999999999996544
No 197
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=90.28 E-value=17 Score=34.48 Aligned_cols=309 Identities=15% Similarity=0.135 Sum_probs=165.4
Q ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEE
Q 011355 91 HAGGLERHALTLHLALAKRG--HELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVI 168 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 168 (488)
-..|+..-+.-|+..|++.. ++|.++..++..............+.. .. +... .. +.||+
T Consensus 16 W~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~~~~~~~~~~~~~--------~~----~~~~----~~--~lDVl 77 (364)
T PF10933_consen 16 WENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIPAALMLDLLDVPL--------VD----FDDA----ID--ELDVL 77 (364)
T ss_pred hhhchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCCcccccccCCCce--------ec----HHHh----cc--cCCEE
Confidence 34678888888999998875 789999876543222111111100000 01 1111 11 68999
Q ss_pred EeCCcc-----hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcCh
Q 011355 169 HTESVG-----LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSD 243 (488)
Q Consensus 169 ~~~~~~-----~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~ 243 (488)
+-.+.. +....+++.+ ++....|..+...-.. -++..+.... -.-..+|.|.++-+
T Consensus 78 IEmg~ql~~~~~~~~~~~G~K-vV~y~~GndYv~~~E~---~lF~k~~~~~---------------f~~~~yD~VW~lPq 138 (364)
T PF10933_consen 78 IEMGAQLDPEWLDYMRARGGK-VVSYRCGNDYVMDIES---MLFNKPSGHL---------------FNGAPYDEVWTLPQ 138 (364)
T ss_pred EEccCccCHHHHHHHHHcCCe-EEEEeCCchHHHHhhH---HhcCCCCCcc---------------CCCCCCceeEeccc
Confidence 876543 3344445544 8888887655322111 1122221100 11256787776654
Q ss_pred hh---HHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCC-cEEE-EEEeeeccccChHHHHHHHHHh
Q 011355 244 HC---GDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENR-SLVL-GMAGRLVKDKGHPLMFEALKQL 318 (488)
Q Consensus 244 ~~---~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~-~~~i-~~~Grl~~~Kg~~~ll~a~~~l 318 (488)
.. ..++.-.+ ..+++++|.--++.++......-++-..++|..+++ +..+ ++=-++.--|+--.=+-+.++.
T Consensus 139 ~~~~~~~yl~~l~---r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~a 215 (364)
T PF10933_consen 139 FENTCAPYLETLH---RCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEA 215 (364)
T ss_pred hhhhchHHHHHHh---cCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHH
Confidence 32 34555444 456788887666554433221111112234443322 1222 2222333345532222233333
Q ss_pred HhhccCCCCC-eEEE-EEeCCCch--hHHh----hh----CCcEEEeCccCHHHHHHHHH-hcCEEEeCCCCCCCCChHH
Q 011355 319 LAENDTFRRS-TVFL-VAGDGPWG--ARYR----DL----GTNVIVLGPLDQTRLAMFYN-AIDIFVNPTLRAQGLDHTV 385 (488)
Q Consensus 319 ~~~~~~~~~~-~~l~-ivG~g~~~--~~~~----~l----~~~V~~~g~v~~~~l~~~~~-~adv~v~ps~~~eg~~~~~ 385 (488)
-... |+ +..+ ++-.-..+ ..+. .+ .....|.|.. ++..+++ ..|++|.-- |.-+.-..-
T Consensus 216 YR~~----P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~tD~VvSHq-WeN~lNYlY 287 (364)
T PF10933_consen 216 YRAD----PDAVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHTDAVVSHQ-WENPLNYLY 287 (364)
T ss_pred HHhC----hhhcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCCCEEEecc-ccchhhHHH
Confidence 3333 33 3333 33321111 1111 11 2567788865 3445554 578888644 555666788
Q ss_pred HHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCH
Q 011355 386 LEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 386 lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
+||+.-|=|.|- |.+- +. +.|+..+. |..+=++++.+.+.+....++...+++++.+.. ++.
T Consensus 288 ~daLyggYPLVH-NS~~-----l~--d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~-~~p 350 (364)
T PF10933_consen 288 YDALYGGYPLVH-NSPL-----LK--DVGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDR-LSP 350 (364)
T ss_pred HHHHhcCCCccc-Ccch-----hc--ccCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-hCC
Confidence 999999999994 3322 32 38999998 999999999988887677788888888888755 454
No 198
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.20 E-value=7.3 Score=35.31 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=65.0
Q ss_pred hhhhhhhCCCCCCcEEEEEEeeecccc-ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh-------------
Q 011355 280 KDFKKKFGIPENRSLVLGMAGRLVKDK-GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------------- 345 (488)
Q Consensus 280 ~~~r~~~~i~~~~~~~i~~~Grl~~~K-g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------------- 345 (488)
..+++++|+++.....+ +-+..++ ..+-.|+-+++.. .++.|++.+. .....+.+
T Consensus 165 ~~l~~rlgv~ek~~~~~---slFaY~npa~~s~ieq~r~a~-------~p~llL~~e~-~~~~~~~~~~~~~~~a~Gdv~ 233 (370)
T COG4394 165 EYLLERLGVNEKYDLIA---SLFAYENPALPSWIEQLRKAD-------KPILLLIPEG-KTQANFAKYFDNNNNADGDVF 233 (370)
T ss_pred HHHHHHcCCchhhchhh---hhhccCCcchHHHHHHHHhcC-------CCEEEEcccc-hHHHHHHHHcCCCcccccchh
Confidence 45677777765432222 2222333 4555666555543 3455555543 22222221
Q ss_pred --hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCC
Q 011355 346 --LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLA 401 (488)
Q Consensus 346 --l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~ 401 (488)
-.-+|..++++++++..+++..||+-+. ++|. +.+-|..+|+|.+=.=.+
T Consensus 234 ~~~~lrvvklPFvpqddyd~LL~lcD~n~V---RGED---SFVRAq~agkPflWHIYp 285 (370)
T COG4394 234 QTAKLRVVKLPFVPQDDYDELLWLCDFNLV---RGED---SFVRAQLAGKPFLWHIYP 285 (370)
T ss_pred cccceEEEEecCCcHhHHHHHHHhccccee---ecch---HHHHHHHcCCCcEEEecC
Confidence 1245778999999999999999999665 5565 778999999999865443
No 199
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=89.92 E-value=5.9 Score=39.18 Aligned_cols=161 Identities=11% Similarity=-0.010 Sum_probs=77.7
Q ss_pred eEEEEEecCC-------CCCCCCCcHHHHHHHHHHHHHHC--------CC----eEEEEecCCCCCCCCC----------
Q 011355 77 LKIALFVKKW-------PHRSHAGGLERHALTLHLALAKR--------GH----ELHIFTASCLNCSFPT---------- 127 (488)
Q Consensus 77 mkIl~i~~~~-------p~~~~~gG~~~~~~~l~~~L~~~--------G~----~V~v~~~~~~~~~~~~---------- 127 (488)
-+|++++.+- -..+..||--.|+.+++++|.+. |. +|.++|.--++.....
T Consensus 273 f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~g 352 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSG 352 (550)
T ss_dssp SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETT
T ss_pred EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCC
Confidence 4889988631 11236789999999999999753 43 4888877543332211
Q ss_pred -CCCceEEEecCCCC-----c---cCcchhHHHH-----HHHHHHhcCCCCCcEEEeCCc-----chHHhhhccCCcEEE
Q 011355 128 -YPISSLYFHLSKPT-----A---AGYLDQSIVW-----QQLQTQNSTGKPFDVIHTESV-----GLRHTRARNLTNVVV 188 (488)
Q Consensus 128 -~~~~~i~~~~~~~~-----~---~~~~~~~~~~-----~~~~~~~~~~~~~Dvv~~~~~-----~~~~~~~~~~p~~v~ 188 (488)
.....+++++.... + ...|.+...+ ..+..... ..||+||.|.. +.....+.++| ...
T Consensus 353 t~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe~fa~d~~~~i~~e~~--~~PdlI~GnYsDgnlvA~LLs~~lgv~-~~~ 429 (550)
T PF00862_consen 353 TENARILRVPFGPEKGILRKWISRFDLWPYLEEFADDAEREILAELQ--GKPDLIIGNYSDGNLVASLLSRKLGVT-QCF 429 (550)
T ss_dssp ESSEEEEEE-ESESTEEE-S---GGG-GGGHHHHHHHHHHHHHHHHT--S--SEEEEEHHHHHHHHHHHHHHHT-E-EEE
T ss_pred CCCcEEEEecCCCCcchhhhccchhhchhhHHHHHHHHHHHHHHHhC--CCCcEEEeccCcchHHHHHHHhhcCCc-eeh
Confidence 22223333333211 1 1223322221 11222222 28999999852 22222334567 788
Q ss_pred eeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHH
Q 011355 189 SWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGD 247 (488)
Q Consensus 189 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~ 247 (488)
+-|...-.-+. ...-...-...-+....++..+...++.+|.||+-+.....
T Consensus 430 iaHsLek~Ky~-------~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 430 IAHSLEKTKYE-------DSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp E-SS-HHHHHH-------TTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHHHHH
T ss_pred hhhcccccccc-------ccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcchHhhc
Confidence 88875322111 01111111244555666666667788999999997754433
No 200
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=88.75 E-value=5.2 Score=32.51 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=57.2
Q ss_pred EEEEEEeeeccccChHHHHHH------HHHhHhhccCCCCCeEEE-EEeCCC-ch-hHHhh--hCCc--EEEeCccCHHH
Q 011355 294 LVLGMAGRLVKDKGHPLMFEA------LKQLLAENDTFRRSTVFL-VAGDGP-WG-ARYRD--LGTN--VIVLGPLDQTR 360 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a------~~~l~~~~~~~~~~~~l~-ivG~g~-~~-~~~~~--l~~~--V~~~g~v~~~~ 360 (488)
-+++.+|.-. .+.|+.+ ...|.+.+ -.+|+ =.|+|. .. +.... .... |....+ ..+
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G-----~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f--~ps 73 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRG-----FTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDF--SPS 73 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcC-----ccEEEEEecCCccCCCCHHHhhcccCCeEEEEEec--Ccc
Confidence 4677888653 5666643 34455544 23443 467762 11 11111 1233 444455 458
Q ss_pred HHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCc
Q 011355 361 LAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASI 403 (488)
Q Consensus 361 l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~ 403 (488)
+.++++.||++|. + .|- .+++|.+..|+|.|+.-....
T Consensus 74 l~e~I~~AdlVIs---H-AGa-GS~letL~l~KPlivVvNd~L 111 (170)
T KOG3349|consen 74 LTEDIRSADLVIS---H-AGA-GSCLETLRLGKPLIVVVNDSL 111 (170)
T ss_pred HHHHHhhccEEEe---c-CCc-chHHHHHHcCCCEEEEeChHh
Confidence 9999999999996 2 343 389999999999998654443
No 201
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=88.57 E-value=1.9 Score=36.43 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHHH--HHCCCeEEEEecCCCCCC
Q 011355 91 HAGGLERHALTLHLAL--AKRGHELHIFTASCLNCS 124 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L--~~~G~~V~v~~~~~~~~~ 124 (488)
..||....+..|.+.+ ....++..+++..+....
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~ 41 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSR 41 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccH
Confidence 4699999999999999 233677778877765443
No 202
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=86.04 E-value=1.3 Score=35.94 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=27.6
Q ss_pred EEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 79 IALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 79 Il~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|++.+. ..+|.-.-...++++|+++||||.+.+...
T Consensus 1 Ili~~~------Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 1 ILIATG------GTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp EEEEEE------SSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred CEEEEc------CChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 455554 456777778899999999999999888764
No 203
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=84.14 E-value=10 Score=36.05 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=66.3
Q ss_pred hhhhhhhCCC--CCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh------------
Q 011355 280 KDFKKKFGIP--ENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD------------ 345 (488)
Q Consensus 280 ~~~r~~~~i~--~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~------------ 345 (488)
..+.+++|++ ++. .++..++ .+.-.+..++++++... .+++++|-. |.....+..
T Consensus 168 ~~~~~~lg~~~~~~~-~~vSLF~--Ye~~al~~ll~~~~~~~-------~pv~lLvp~-Gr~~~~v~~~l~~~~~~~g~~ 236 (371)
T TIGR03837 168 RALLRRLGVGPEPDA-LLVSLFC--YENAALPALLDALAQSG-------SPVHLLVPE-GRALAAVAAWLGDALLAAGDV 236 (371)
T ss_pred HHHHHHcCCCCCCCC-eEEEEEe--cCChhHHHHHHHHHhCC-------CCeEEEecC-CccHHHHHHHhCccccCCccc
Confidence 3456677875 333 3332222 23344777888776543 355555544 332222211
Q ss_pred --h-CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCC
Q 011355 346 --L-GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRL 400 (488)
Q Consensus 346 --l-~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~ 400 (488)
. .-.|++++++++++...++-.||+-+. ++|- +++=|..+|+|.|=.=.
T Consensus 237 ~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfV---RGED---SFVRAqWAgkPfvWhIY 288 (371)
T TIGR03837 237 HRRGALTVAVLPFVPQDDYDRLLWACDLNFV---RGED---SFVRAQWAGKPFVWHIY 288 (371)
T ss_pred cccCceEEEEcCCCChhhHHHHHHhChhcEe---echh---HHHHHHHcCCCceeecc
Confidence 0 135888999999999999999999554 6776 78999999999996543
No 204
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=83.81 E-value=19 Score=33.25 Aligned_cols=92 Identities=16% Similarity=0.100 Sum_probs=54.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------------CCCceEEEecCCCCc
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT------------YPISSLYFHLSKPTA 142 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~------------~~~~~i~~~~~~~~~ 142 (488)
+.-.|.+... ...|=++.+-.|.+.|.++||.|-|++.++..+...- ...+++.+..... .
T Consensus 50 ~a~viGITG~------PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s-r 122 (323)
T COG1703 50 NAHVIGITGV------PGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS-R 122 (323)
T ss_pred CCcEEEecCC------CCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC-C
Confidence 3345555542 3467788899999999999999999999876554322 2234444433221 1
Q ss_pred cCcchhHHHHHHHHHHhcCCCCCcEEEeCCcc
Q 011355 143 AGYLDQSIVWQQLQTQNSTGKPFDVIHTESVG 174 (488)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~ 174 (488)
...-.....-.......... .||+|++.+.+
T Consensus 123 G~lGGlS~at~~~i~~ldAa-G~DvIIVETVG 153 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAA-GYDVIIVETVG 153 (323)
T ss_pred ccchhhhHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 11122233333333333333 89999998754
No 205
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=82.78 E-value=13 Score=33.36 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=29.3
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
+..++|++|..+ |.+-..|.. ..+..+.++|++|.+++.+.+..
T Consensus 8 ~~~~~vL~v~aH-PDDe~~g~g-----gtla~~~~~G~~V~v~~lT~Ge~ 51 (237)
T COG2120 8 LDPLRVLVVFAH-PDDEEIGCG-----GTLAKLAARGVEVTVVCLTLGEA 51 (237)
T ss_pred ccCCcEEEEecC-CcchhhccH-----HHHHHHHHCCCeEEEEEccCCcc
Confidence 356899999864 333233333 34455688999999999886543
No 206
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=82.76 E-value=12 Score=29.92 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=57.3
Q ss_pred EEEEEeeeccccChHHHHHH--HHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEE
Q 011355 295 VLGMAGRLVKDKGHPLMFEA--LKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFV 372 (488)
Q Consensus 295 ~i~~~Grl~~~Kg~~~ll~a--~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v 372 (488)
+++.+|.- ..++..++.- ...+.+.. .+--++=.|+|.... . ....+.|+--.+++..+...|.++|
T Consensus 2 ifVTvGst--f~~f~rlv~k~e~~el~~~i----~e~lIvQyGn~d~kp----v-agl~v~~F~~~~kiQsli~darIVI 70 (161)
T COG5017 2 IFVTVGST--FYPFNRLVLKIEVLELTELI----QEELIVQYGNGDIKP----V-AGLRVYGFDKEEKIQSLIHDARIVI 70 (161)
T ss_pred eEEEecCc--cchHHHHHhhHHHHHHHHHh----hhheeeeecCCCccc----c-cccEEEeechHHHHHHHhhcceEEE
Confidence 46678865 3334333332 22233332 222344567765432 1 2367788877899999999999777
Q ss_pred eCCCCCCCCChHHHHHHHcCCcEEEeCCCC
Q 011355 373 NPTLRAQGLDHTVLEAMLSGKPLMATRLAS 402 (488)
Q Consensus 373 ~ps~~~eg~~~~~lEAma~G~PVI~~~~~~ 402 (488)
. +-++| +++.++..++|.|......
T Consensus 71 S--HaG~G---SIL~~~rl~kplIv~pr~s 95 (161)
T COG5017 71 S--HAGEG---SILLLLRLDKPLIVVPRSS 95 (161)
T ss_pred e--ccCcc---hHHHHhhcCCcEEEEECch
Confidence 4 32444 8899999999999875544
No 207
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.23 E-value=2.5 Score=31.87 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=37.2
Q ss_pred HhhhCCcEEEe---CccCHH--HHHHHHHhcCEEEeCCCC-CCC-CChHHHHHHHcCCcEEEeCCCCcc
Q 011355 343 YRDLGTNVIVL---GPLDQT--RLAMFYNAIDIFVNPTLR-AQG-LDHTVLEAMLSGKPLMATRLASIV 404 (488)
Q Consensus 343 ~~~l~~~V~~~---g~v~~~--~l~~~~~~adv~v~ps~~-~eg-~~~~~lEAma~G~PVI~~~~~~~~ 404 (488)
+++.+-...+. +..... .+...+..+|++|++... +.+ .-.+--+|-..|+|++.++..+..
T Consensus 19 ~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 19 LEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred HHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 33344444444 333333 488999999998886642 111 122334566789999999866654
No 208
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=82.01 E-value=2.5 Score=35.67 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=27.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
|||++|.. .|-+.. .++++..++||+|+.++.+....
T Consensus 1 mKIaiIgA-------sG~~Gs---~i~~EA~~RGHeVTAivRn~~K~ 37 (211)
T COG2910 1 MKIAIIGA-------SGKAGS---RILKEALKRGHEVTAIVRNASKL 37 (211)
T ss_pred CeEEEEec-------CchhHH---HHHHHHHhCCCeeEEEEeChHhc
Confidence 89999985 233333 57788889999999999876443
No 209
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.00 E-value=2.4 Score=33.26 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+|+....-. ....+- ....|+.+.+++||+|.++...+
T Consensus 1 Mki~fvmDpi~~-i~~~kD--TT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIES-IKPYKD--TTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG---TTT---HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHH-CCCCCC--hHHHHHHHHHHCCCEEEEEEcCc
Confidence 899999873211 122332 33468888899999999998875
No 210
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=81.01 E-value=2.5 Score=36.71 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=30.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSF 125 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~ 125 (488)
|||++..+. .. ...-+..|.++|++.||+|.|+++..+....
T Consensus 1 M~ILlTNDD-----Gi--~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDD-----GI--DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS------T--TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCC-----CC--CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 899999862 12 2335668999998778999999998765443
No 211
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=78.19 E-value=6.7 Score=34.14 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=48.1
Q ss_pred ChhhHHHHHHHhcCCCCcEEEecC--CccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhH
Q 011355 242 SDHCGDVLKRIYMIPEERVHVILN--GVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLL 319 (488)
Q Consensus 242 S~~~~~~~~~~~g~~~~~i~vi~n--gvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~ 319 (488)
|.+....+++ .|+ .|||| +.+.+.+.. ---|++.+....|.+.|........+.+++.+.++.
T Consensus 99 ~r~~g~~~q~-~Gi-----~VIP~v~W~~~~s~~~---------~~~gi~~~~ivaist~g~~~~~~~~~~f~~Gl~em~ 163 (200)
T PF14386_consen 99 SRWLGAYWQS-NGI-----KVIPNVSWSDKRSFDF---------CFDGIPKGSIVAISTNGCINNKEDKKLFLDGLREML 163 (200)
T ss_pred HHHHHHHHHH-CCC-----eEcceEEecCcchHHH---------HHhhcccCCEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 4445566665 554 68887 334333221 123566676344555554444445677889999998
Q ss_pred hhccCCCCCeEEEEEeCCC
Q 011355 320 AENDTFRRSTVFLVAGDGP 338 (488)
Q Consensus 320 ~~~~~~~~~~~l~ivG~g~ 338 (488)
++. .+.++++.|..+
T Consensus 164 ~rl----~P~~ilvyG~~~ 178 (200)
T PF14386_consen 164 KRL----RPKHILVYGGMP 178 (200)
T ss_pred hcc----CCCeEEEECCch
Confidence 887 678889999555
No 212
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=77.52 E-value=24 Score=30.99 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.7
Q ss_pred EEEEEecCCCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 78 KIALFVKKWPHRSHAGGLE--RHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+|.++++ ..||++ +...++..+|++.|+.|.++-..-+
T Consensus 3 ~iIVvTS------GKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTS------GKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEec------CCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 6777776 345544 6678999999999999999987654
No 213
>PRK06849 hypothetical protein; Provisional
Probab=77.44 E-value=5.7 Score=38.86 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=45.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQ 154 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 154 (488)
.+|||+++.... ...+.+++.|.+.||+|+++................... ...+ ..........
T Consensus 3 ~~~~VLI~G~~~----------~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~-~p~p----~~d~~~~~~~ 67 (389)
T PRK06849 3 TKKTVLITGARA----------PAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYT-IPSP----RWDPDAYIQA 67 (389)
T ss_pred CCCEEEEeCCCc----------HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEE-eCCC----CCCHHHHHHH
Confidence 468888886421 145689999999999999997764221110111111111 1111 1122233344
Q ss_pred HHHHhcCCCCCcEEEeCCc
Q 011355 155 LQTQNSTGKPFDVIHTESV 173 (488)
Q Consensus 155 ~~~~~~~~~~~Dvv~~~~~ 173 (488)
+..+.++. ++|+|+...-
T Consensus 68 L~~i~~~~-~id~vIP~~e 85 (389)
T PRK06849 68 LLSIVQRE-NIDLLIPTCE 85 (389)
T ss_pred HHHHHHHc-CCCEEEECCh
Confidence 44444444 7999987653
No 214
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=77.06 E-value=7.6 Score=32.01 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=28.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++|..+. ...|-....+..+++.+.+.|+++.++...+
T Consensus 1 Mkilii~gS~---r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSP---RKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSS---STTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcC---CCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 8999998632 1234445566677777878899999997664
No 215
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=76.93 E-value=6.2 Score=31.56 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=46.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHE-LHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQL 155 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 155 (488)
||++++...-|. .+-..+..+++++++.+.||+ +.|+-..+.-...... ..|.. ...++...|..+
T Consensus 1 m~~~iv~~~~Py---~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~---------q~p~~-~~~n~~~~~~~L 67 (128)
T PRK00207 1 MRYAIAVTGPAY---GTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANAL---------TVPAS-DEFDLVRAWQQL 67 (128)
T ss_pred CEEEEEEcCCCC---CCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcC---------CCCch-hhhhHHHHHHHH
Confidence 899998865443 344457788999999999998 5887776532211110 01111 123455566666
Q ss_pred HHHhcCCCCCcEEEeCC
Q 011355 156 QTQNSTGKPFDVIHTES 172 (488)
Q Consensus 156 ~~~~~~~~~~Dvv~~~~ 172 (488)
.... +.++.+|.+
T Consensus 68 ~~~~----~v~l~vC~~ 80 (128)
T PRK00207 68 AAEH----GVALNVCVA 80 (128)
T ss_pred HHhc----CCEEEEeHH
Confidence 4443 677777754
No 216
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=75.84 E-value=62 Score=29.35 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=45.7
Q ss_pred EEEeCccCHHHHHHHHHhc--CEEEe-CCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHH
Q 011355 350 VIVLGPLDQTRLAMFYNAI--DIFVN-PTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKK 426 (488)
Q Consensus 350 V~~~g~v~~~~l~~~~~~a--dv~v~-ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~ 426 (488)
+-..|..+.+.=..+++.. |++|. -|-. .|+.-++--|..+|+|||.-.-+..+. ..-.++ +.+++.+
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~-~g~~eKi~AA~~lgi~vivI~RP~~~~-------~~~~~~-~~~e~l~ 245 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGG-SGFDEKIEAARELGIPVIVIKRPPEPY-------GDPVVE-TIEELLD 245 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCc-hhhHHHHHHHHHcCCeEEEEeCCCCCC-------CCcccC-CHHHHHH
Confidence 4456777766666777754 44554 2322 377788999999999999988766541 111134 6777766
Q ss_pred HHH
Q 011355 427 ALY 429 (488)
Q Consensus 427 ~i~ 429 (488)
.++
T Consensus 246 ~l~ 248 (249)
T PF02571_consen 246 WLE 248 (249)
T ss_pred HHh
Confidence 554
No 217
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=75.21 E-value=26 Score=28.88 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||+|++-+ ...|-....+..++..|.+.|++|++.-...
T Consensus 1 Mk~LIlYs-----tr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~ 39 (175)
T COG4635 1 MKTLILYS-----TRDGQTRKIAEYIASHLRESGIQVDIQDLHA 39 (175)
T ss_pred CceEEEEe-----cCCCcHHHHHHHHHHHhhhcCCeeeeeehhh
Confidence 78888864 3667777888999999999999999987664
No 218
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=75.04 E-value=2.4 Score=33.73 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcc
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIV 404 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~ 404 (488)
+++.+++..+|++|--|. ++..--.+-.++.+|+|+|..-.|...
T Consensus 59 ~~l~~~~~~~DVvIDfT~-p~~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN-PDAVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred hhHHHhcccCCEEEEcCC-hHHhHHHHHHHHhCCCCEEEECCCCCH
Confidence 578888888999998775 566555667788999999987776643
No 219
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.88 E-value=67 Score=30.97 Aligned_cols=157 Identities=11% Similarity=0.207 Sum_probs=81.1
Q ss_pred EEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeC-CC--ch----hHHhh----h-CCcEEEe-----CccCHHH
Q 011355 298 MAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGD-GP--WG----ARYRD----L-GTNVIVL-----GPLDQTR 360 (488)
Q Consensus 298 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-g~--~~----~~~~~----l-~~~V~~~-----g~v~~~~ 360 (488)
|.|+....+-.....+.+.+.++ .++.++|+-. |. .+ +++.+ + .++|.|. |.--.++
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKk------e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKK------ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred eEecccccchHHHHHHHHHHHHh------cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 44555555666666666666665 3455555532 21 11 12222 1 1445442 2111334
Q ss_pred HHHHHHhcCE--EEeCCCCC--CCCChHHHHHHHcCCcEEEeCCCCcccceeecCCc----eeEeCC-CHHHHHHHHHHH
Q 011355 361 LAMFYNAIDI--FVNPTLRA--QGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDM----GYLFSP-QVESVKKALYGI 431 (488)
Q Consensus 361 l~~~~~~adv--~v~ps~~~--eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~----g~l~~~-d~~~la~~i~~l 431 (488)
...+=...|+ +|.+-+.+ -| |.++---.+.++|||--..|..-++ ++.-.. +-+.-- |.+.|.+.+.++
T Consensus 233 a~aFk~~vdvg~vIlTKlDGhakG-GgAlSaVaaTksPIiFIGtGEhmdD-lE~F~pk~FvsrlLGmGDi~glvek~~ev 310 (483)
T KOG0780|consen 233 ARAFKETVDVGAVILTKLDGHAKG-GGALSAVAATKSPIIFIGTGEHMDD-LEPFDPKPFVSRLLGMGDIEGLVEKVQEV 310 (483)
T ss_pred HHHHHHhhccceEEEEecccCCCC-CceeeehhhhCCCEEEEecCccccc-cCCCChHHHHHHHhccccHHHHHHHHHHH
Confidence 4455556676 45543321 12 2233334467899998777665532 221111 222333 899999999998
Q ss_pred HhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 432 WADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 432 l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
..++.+...+ +- -.-+|+...+.+++..+.+
T Consensus 311 ~~~d~~el~~---kl---~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 311 GKDDAKELVE---KL---KQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred hhhhHHHHHH---HH---HhCCccHHHHHHHHHHHHh
Confidence 8432322222 11 1245888888888877764
No 220
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=74.84 E-value=5.2 Score=32.02 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=27.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++... ..++... +..+++.|.+.|++|.++....
T Consensus 1 k~i~l~vt------Gs~~~~~-~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVT------GSIAAYK-APDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-------SSGGGGG-HHHHHHHHHTTTSEEEEEESHH
T ss_pred CEEEEEEE------CHHHHHH-HHHHHHHHhhCCCEEEEEECCc
Confidence 68888875 2334333 7899999999999999997754
No 221
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=73.81 E-value=8 Score=36.30 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=32.3
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|++++||++++.+.++. ..=.-.....+.++|.+.||+|.++...
T Consensus 1 ~~~~~~v~~~~g~~~~~--~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 1 PKMFGKVAVLMGGTSAE--REVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCCcEEEEEeCCCCCC--ceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 45677999999765442 2222334578999999999999998654
No 222
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=73.43 E-value=17 Score=36.11 Aligned_cols=36 Identities=28% Similarity=0.190 Sum_probs=26.0
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
++.|||++... .|= .-..|++.|.++||+|.++...
T Consensus 118 ~~~mkILVTGa-------tGF---IGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGG-------AGF---VGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred cCCCEEEEECC-------ccH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 46699888753 222 3337899999999999988653
No 223
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=73.37 E-value=8.6 Score=27.66 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=46.1
Q ss_pred hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeec
Q 011355 230 KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLV 303 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~ 303 (488)
.....+|.|.+..+...+.+++ .|. .+++.+|-++|...+.+......+ ++++ . --|.|+|+..
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~-~G~--~~V~yLPLAa~~~~~~p~~~~~~~-~~~~---~---~dIsFVG~~y 77 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRN-LGA--ENVFYLPLAANPERFRPIPVDPEE-RKKY---E---CDISFVGSLY 77 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHH-cCC--CCEEEccccCCHHHhCcccCCccc-cccc---C---CCEEEeCcCc
Confidence 3468899999999999999998 664 689999999999988776542111 1111 1 2477899864
No 224
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=73.14 E-value=23 Score=35.52 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC-cEEEeCCCCccc-ceeecCCceeEeCCCHHHHHHHHHHHHh-c
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK-PLMATRLASIVG-SVIVGTDMGYLFSPQVESVKKALYGIWA-D 434 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~-PVI~~~~~~~~~-e~v~~~~~g~l~~~d~~~la~~i~~ll~-~ 434 (488)
.....+.++.+...+.|.-. +...-.++||+..|| |||.++.-..+- +.+.-.+.++.++. +++-+.|.+++. -
T Consensus 334 ~~~y~~~m~~S~FCL~p~Gd-~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~--~~v~~~~~~iL~~i 410 (464)
T KOG1021|consen 334 PLNYMEGMQDSKFCLCPPGD-TPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPE--KDVPELIKNILLSI 410 (464)
T ss_pred cchHHHHhhcCeEEECCCCC-CcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEH--HHhhhHHHHHHHhc
Confidence 45788999999999999975 556679999999996 999987633331 33333455666653 333333333333 2
Q ss_pred CHHHHHHHHHHHHHHHhhhCCH
Q 011355 435 GREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
+.++...|.++....+.+.|-+
T Consensus 411 ~~~~~~~m~~~v~~~v~r~~~~ 432 (464)
T KOG1021|consen 411 PEEEVLRMRENVIRLVPRHFLK 432 (464)
T ss_pred CHHHHHHHHHHHHHHHHhhEEe
Confidence 3455666666665555555443
No 225
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=72.19 E-value=45 Score=29.01 Aligned_cols=117 Identities=12% Similarity=0.157 Sum_probs=57.4
Q ss_pred EEEEEEeeecc-ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch-hHHhhhCCcEEEeCccCHHHHHHHHHhcCEE
Q 011355 294 LVLGMAGRLVK-DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG-ARYRDLGTNVIVLGPLDQTRLAMFYNAIDIF 371 (488)
Q Consensus 294 ~~i~~~Grl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~-~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~ 371 (488)
.+++|+|+-.. .+. .|++..++|++.. -.+.++..|..... +.+.+.-+-+...|. .|+++
T Consensus 109 riVvFvGSpi~e~ek--eLv~~akrlkk~~----Vaidii~FGE~~~~~e~l~~fida~N~~~~-----------gshlv 171 (259)
T KOG2884|consen 109 RIVVFVGSPIEESEK--ELVKLAKRLKKNK----VAIDIINFGEAENNTEKLFEFIDALNGKGD-----------GSHLV 171 (259)
T ss_pred EEEEEecCcchhhHH--HHHHHHHHHHhcC----eeEEEEEeccccccHHHHHHHHHHhcCCCC-----------CceEE
Confidence 45667776432 222 5667677777654 45555666643322 111111011111111 34555
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeec-CCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 372 VNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG-TDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 372 v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~-~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
..|. | + +++-.-.-.|++..+-|+.......+ ...-+=++| +..+||.+++--++.
T Consensus 172 ~Vpp----g-~--~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 172 SVPP----G-P--LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred EeCC----C-c--cHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHH
Confidence 5544 1 1 45555667899988755533211111 122233445 567899999876654
No 226
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=71.84 E-value=38 Score=27.10 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=55.5
Q ss_pred hHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceee--cCCceeEeC
Q 011355 341 ARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIV--GTDMGYLFS 418 (488)
Q Consensus 341 ~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~--~~~~g~l~~ 418 (488)
+.+++ +-.|.+....+.+++.+.+..+|+++..+. ..+.-.+++++ -++-.|++...|.. .+-. -.+.|+.+.
T Consensus 13 ~~l~~-~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~--~~~~~~~l~~~-~~Lk~I~~~~~G~d-~id~~~a~~~gI~V~ 87 (133)
T PF00389_consen 13 ERLEE-GFEVEFCDSPSEEELAERLKDADAIIVGSG--TPLTAEVLEAA-PNLKLISTAGAGVD-NIDLEAAKERGIPVT 87 (133)
T ss_dssp HHHHH-TSEEEEESSSSHHHHHHHHTTESEEEESTT--STBSHHHHHHH-TT-SEEEESSSSCT-TB-HHHHHHTTSEEE
T ss_pred HHHHC-CceEEEeCCCCHHHHHHHhCCCeEEEEcCC--CCcCHHHHhcc-ceeEEEEEcccccC-cccHHHHhhCeEEEE
Confidence 34444 227888888889999999999999998552 24777889888 89999998877764 3211 123455554
Q ss_pred C----CHHHHHHHH
Q 011355 419 P----QVESVKKAL 428 (488)
Q Consensus 419 ~----d~~~la~~i 428 (488)
. ..++.|+..
T Consensus 88 n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 88 NVPGYNAEAVAEHA 101 (133)
T ss_dssp E-TTTTHHHHHHHH
T ss_pred EeCCcCCcchhccc
Confidence 3 455555544
No 227
>PRK09271 flavodoxin; Provisional
Probab=70.95 E-value=11 Score=31.54 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+|+.. +..|..+..+..+++.|...|++|.+....
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~ 38 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWVETD 38 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEEecc
Confidence 78888874 367888999999999999999999876543
No 228
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=70.68 E-value=9 Score=32.82 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=20.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCe
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHE 112 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~ 112 (488)
|||+++.+. +| .....+.++|.+.+++
T Consensus 1 mrI~~~~Sg-------~~--~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSG-------SG--SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESS-------SS--HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcC-------CC--HHHHHHHHHHHhCCCC
Confidence 899999751 12 4556778899999887
No 229
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=69.97 E-value=47 Score=30.52 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..|++.|++ .....|-.+.+.+|+.+|++.|..|.++-.+
T Consensus 102 ~~~vi~vts----~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVS----AKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEEC----CCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 446666655 2355677788999999999999999999664
No 230
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=69.24 E-value=46 Score=26.30 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 96 ERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 96 ~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
...+-.++..+.+.|++|.+++...+
T Consensus 11 ~l~~gg~i~~~~~~g~~v~vv~~t~G 36 (128)
T PF02585_consen 11 ELGCGGTIAKLAEAGHRVVVVTLTDG 36 (128)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEECE--
T ss_pred HHhhHHHHHHHHhcCCeEEEEEeccc
Confidence 33444455666777888887777654
No 231
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=68.32 E-value=44 Score=30.13 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
|||++..+. |=...-+..|+++|+ .++||+|+++..+...
T Consensus 1 mrILlTNDD-------Gi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 1 MRILLTNDD-------GIHAPGIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred CeEEEecCC-------ccCCHHHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 788888752 222234567889998 7899999999875543
No 232
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=68.15 E-value=11 Score=34.27 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=30.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.+++-++|+. ..+|++. .+++.|+++||+|.+++....
T Consensus 4 ~~~~~~lITG------ASsGIG~---~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 4 MKGKTALITG------ASSGIGA---ELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CCCcEEEEEC------CCchHHH---HHHHHHHHCCCEEEEEeCcHH
Confidence 4566777775 6788876 799999999999999998754
No 233
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=68.04 E-value=45 Score=30.39 Aligned_cols=92 Identities=4% Similarity=-0.099 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHcCCcEEEeCCCCc--ccceeecCCceeEeCCCH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhC
Q 011355 379 QGLDHTVLEAMLSGKPLMATRLASI--VGSVIVGTDMGYLFSPQV--ESVKKALYGIWADGREVLEKKGLVARKRGLNLF 454 (488)
Q Consensus 379 eg~~~~~lEAma~G~PVI~~~~~~~--~~e~v~~~~~g~l~~~d~--~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~f 454 (488)
-+++..+-=-|+|+-.|+.....-. -.+.+.....=+-+..|- ++|.++|..+.++ +++.+++++++++++.+..
T Consensus 155 ~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~-~~~a~~Ia~~~~~~~~~~L 233 (256)
T smart00672 155 VAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEH-DKKAQEIGKRGSEFIQQNL 233 (256)
T ss_pred ccchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHc
Confidence 3445555557888877776653211 002233333222333343 4499999999988 9999999999999999989
Q ss_pred CHHHHHHHHHHHHHHhh
Q 011355 455 TATKMAAAYERLFLCIS 471 (488)
Q Consensus 455 s~~~~~~~~~~~~~~~~ 471 (488)
+.+.+..-+.+++.+-.
T Consensus 234 ~~~~~~~Y~~~ll~eya 250 (256)
T smart00672 234 SMEDVYDYMFHLLQEYA 250 (256)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99998888888776643
No 234
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=67.91 E-value=29 Score=31.42 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=49.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------------CCCceEEEecCCCCc
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT------------YPISSLYFHLSKPTA 142 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~------------~~~~~i~~~~~~~~~ 142 (488)
+...|.+..+ ...|=++.+-.|++.|.+.|+.|-|++.++..+...- ...+++.+......
T Consensus 28 ~a~~iGiTG~------PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atR- 100 (266)
T PF03308_consen 28 RAHVIGITGP------PGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATR- 100 (266)
T ss_dssp -SEEEEEEE-------TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE----
T ss_pred CceEEEeeCC------CCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcC-
Confidence 4456776553 4567788999999999999999999998876543221 23344444432211
Q ss_pred cCcchhHHHHHHHHHHhcCCCCCcEEEeCCcc
Q 011355 143 AGYLDQSIVWQQLQTQNSTGKPFDVIHTESVG 174 (488)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~ 174 (488)
...-................ .||+|++.+.+
T Consensus 101 G~lGGls~~t~~~v~ll~aa-G~D~IiiETVG 131 (266)
T PF03308_consen 101 GSLGGLSRATRDAVRLLDAA-GFDVIIIETVG 131 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHT-T-SEEEEEEES
T ss_pred CCCCCccHhHHHHHHHHHHc-CCCEEEEeCCC
Confidence 11112222223333333322 89999998754
No 235
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=67.74 E-value=39 Score=30.14 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=61.3
Q ss_pred EEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeC-------CCchh---HHhhhCCcEEEeCc--cCHHHHH
Q 011355 295 VLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGD-------GPWGA---RYRDLGTNVIVLGP--LDQTRLA 362 (488)
Q Consensus 295 ~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-------g~~~~---~~~~l~~~V~~~g~--v~~~~l~ 362 (488)
.++++|-+...-|...+-+-+..++++. ++.|+|++. |-..+ .+.+.+-+|.=+|. -++.|+.
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-----k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~ 76 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-----KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEIL 76 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-----cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHH
Confidence 4678999988889888889899998875 678888864 22223 34445667777773 3678999
Q ss_pred HHHHhcCEEEeCCCCCCC
Q 011355 363 MFYNAIDIFVNPTLRAQG 380 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg 380 (488)
+++...+.+|=|...+++
T Consensus 77 ~~i~~~~~ilRP~N~p~~ 94 (266)
T COG1692 77 DFIDNADRILRPANYPDG 94 (266)
T ss_pred HHhhcccceeccCCCCCC
Confidence 999999999998876665
No 236
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=67.36 E-value=29 Score=28.37 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=43.4
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC---eEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHH
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH---ELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSI 150 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~---~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (488)
|.++||+++.+.|-. -=.+.....-.+.|.+.|. ++.++... +.+....
T Consensus 1 ~~~~ri~IV~s~~n~----~i~~~ll~~a~~~l~~~g~~~~~i~~~~VP------------------------Ga~ElP~ 52 (144)
T PF00885_consen 1 MSGLRIAIVVSRFNE----EITDRLLEGALEELKRHGVAEENIEVIRVP------------------------GAFELPL 52 (144)
T ss_dssp -TTEEEEEEEESTTH----HHHHHHHHHHHHHHHHTTTTGGCEEEEEES------------------------SGGGHHH
T ss_pred CCCCEEEEEEEeccH----HHHHHHHHHHHHHHHHcCCCccceEEEEcC------------------------CHHHHHH
Confidence 467899999987622 2233444455667777776 66666544 5577777
Q ss_pred HHHHHHHHhcCCCCCcEEEeC
Q 011355 151 VWQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 151 ~~~~~~~~~~~~~~~Dvv~~~ 171 (488)
..+.+.+.. ++|.|++-
T Consensus 53 a~~~l~~~~----~~Davi~l 69 (144)
T PF00885_consen 53 AAKRLAESG----RYDAVIAL 69 (144)
T ss_dssp HHHHHHHCS----TESEEEEE
T ss_pred HHHHHhccc----CccEEEEe
Confidence 777776443 79999873
No 237
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=67.15 E-value=71 Score=31.16 Aligned_cols=99 Identities=16% Similarity=0.048 Sum_probs=64.8
Q ss_pred CcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC-chhHHhh-hCC--cEEEeCccCHHHHHHHHH-
Q 011355 292 RSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP-WGARYRD-LGT--NVIVLGPLDQTRLAMFYN- 366 (488)
Q Consensus 292 ~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~-~~~~~~~-l~~--~V~~~g~v~~~~l~~~~~- 366 (488)
.+.+++...++++..-...++++ +++++ |++.+++.-..+ ..+..++ +++ .+.+++.=..--+..+++
T Consensus 49 ~p~vWiHaaSVGEv~a~~pLv~~---l~~~~----P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~ 121 (419)
T COG1519 49 GPLVWIHAASVGEVLAALPLVRA---LRERF----PDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRK 121 (419)
T ss_pred CCeEEEEecchhHHHHHHHHHHH---HHHhC----CCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHh
Confidence 34788888888776665555554 55566 888888776433 3344444 333 344444422334455554
Q ss_pred -hcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeC
Q 011355 367 -AIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATR 399 (488)
Q Consensus 367 -~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~ 399 (488)
+.|+.|.-- +|-+|+.+.|+-..|+|.+.-|
T Consensus 122 ~~P~l~Ii~E--tElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 122 WRPKLLIIME--TELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred cCCCEEEEEe--ccccHHHHHHHHHcCCCEEEEe
Confidence 678877644 5899999999999999999765
No 238
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=66.38 E-value=32 Score=30.02 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=22.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC--CeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRG--HELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~ 119 (488)
|||++++++ + +..+..+.+++.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg-------~--gs~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASG-------N--GSNLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcC-------C--ChhHHHHHHHHHcCCCCcEEEEEEec
Confidence 799999851 2 334557888887764 566655444
No 239
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=66.20 E-value=54 Score=29.70 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=28.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
|||++..+. |=...-+..|+++|.+. ++|+|+++......
T Consensus 1 M~ILlTNDD-------Gi~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 1 MRILLTNDD-------GIHAPGIRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred CeEEEECCC-------CCCChhHHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 788888752 11123456788999988 79999998765443
No 240
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=65.74 E-value=36 Score=32.13 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=23.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+|+.. ..+.....++|.+.||+|..+...+
T Consensus 1 mkIvf~Gs-----------~~~a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGT-----------PTFSLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECC-----------CHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 79999975 2244567788888899987555443
No 241
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=65.67 E-value=69 Score=28.93 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=40.5
Q ss_pred hCCcEEEeCc--cCHHHHHHHHHhcCEEEe--CCCCCCCCChHHHHHHHcCCcEEEeCCCCc
Q 011355 346 LGTNVIVLGP--LDQTRLAMFYNAIDIFVN--PTLRAQGLDHTVLEAMLSGKPLMATRLASI 403 (488)
Q Consensus 346 l~~~V~~~g~--v~~~~l~~~~~~adv~v~--ps~~~eg~~~~~lEAma~G~PVI~~~~~~~ 403 (488)
+.++|.+.|. ++.+++...+..||++|. +|..-.....-+.+|-..|.|+|.-|....
T Consensus 149 lrP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~ 210 (242)
T PTZ00408 149 LRPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEG 210 (242)
T ss_pred CCCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCC
Confidence 4578888776 456778888999999654 454323333445678889999998876653
No 242
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=65.53 E-value=90 Score=29.08 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=58.5
Q ss_pred EEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeC
Q 011355 295 VLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNP 374 (488)
Q Consensus 295 ~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~p 374 (488)
+++|.|. .+-|=+.+++++- .+.. ++.++++....|....- . .+|.-....+..++...+..+|++|..
T Consensus 3 l~GyyG~--~N~GDe~~l~~~l--~~l~----~~~~~~v~s~~p~~~~~--~-~~v~~~~r~~~~~~~~~l~~~D~vI~g 71 (298)
T TIGR03609 3 LCGYYGF--GNLGDEALLAALL--RELP----PGVEPTVLSNDPAETAK--L-YGVEAVNRRSLLAVLRALRRADVVIWG 71 (298)
T ss_pred EEEecCC--CCcchHHHHHHHH--HhcC----CCCeEEEecCChHHHHh--h-cCceEEccCCHHHHHHHHHHCCEEEEC
Confidence 4455552 4556677888873 3333 67888888766544321 1 155556666677888999999999875
Q ss_pred CC--CCCCCCh--------HHHHHHHcCCcEEEeCCC
Q 011355 375 TL--RAQGLDH--------TVLEAMLSGKPLMATRLA 401 (488)
Q Consensus 375 s~--~~eg~~~--------~~lEAma~G~PVI~~~~~ 401 (488)
.- ..+..+. ...-|..+|+|++....+
T Consensus 72 GG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 72 GGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred CcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 32 1121111 224466789999876443
No 243
>PLN00016 RNA-binding protein; Provisional
Probab=65.37 E-value=8.5 Score=37.49 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=29.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.+|||+++.. ..||.+..-..+++.|.++||+|++++....
T Consensus 51 ~~~~VLVt~~------~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 51 EKKKVLIVNT------NSGGHAFIGFYLAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred ccceEEEEec------cCCCceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence 4568888843 2343344445789999999999999987653
No 244
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=65.31 E-value=24 Score=20.22 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEE
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELH 114 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~ 114 (488)
|||+++.-.--...-..--..-...|.+.+.+.|.+|+
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd 38 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNVD 38 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCCC
Confidence 78888865210000111112334568888999998874
No 245
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=64.88 E-value=54 Score=28.30 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=22.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC--eEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH--ELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~ 120 (488)
|||+++.+ |.+..+..+.+++.+.+. +|.++.+..
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~~ 37 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISNK 37 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEECC
Confidence 68999985 223355678888887665 566544443
No 246
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=64.70 E-value=12 Score=35.26 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=28.1
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++.+|||+++.. |+++. .++..|++.||+|++++...
T Consensus 2 ~~~~m~I~IiG~--------GaiG~---~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGT--------GAIGG---FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECC--------CHHHH---HHHHHHHHCCCeEEEEEeCC
Confidence 456799999964 44444 46778888999999998754
No 247
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=64.11 E-value=20 Score=31.25 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=32.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..||++.|++ .....|-...+.+|+.+|++.|+.|.++-.+.
T Consensus 15 ~~~kvI~v~s----~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 15 AEIKVLLITS----VKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCCcEEEEec----CCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3478777775 22445667789999999999999999987764
No 248
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=63.72 E-value=63 Score=29.22 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=50.7
Q ss_pred hCCcEEEeCc-cCH---HHHHHHHHhcCEEEe--CCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC
Q 011355 346 LGTNVIVLGP-LDQ---TRLAMFYNAIDIFVN--PTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP 419 (488)
Q Consensus 346 l~~~V~~~g~-v~~---~~l~~~~~~adv~v~--ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~ 419 (488)
+.++|.+.|. ++. ++..+....||++|. +|+.-+....-+..|...|.|+|.-|.+... .+....+.+..
T Consensus 153 lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~----~d~~~~~~i~~ 228 (244)
T PRK14138 153 IRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETP----LDDIATLKYNM 228 (244)
T ss_pred ECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCC----CCcceeEEEeC
Confidence 5578888885 554 445677889999655 4543233333334677899999988876543 22334455554
Q ss_pred CHHHHHHHHHHH
Q 011355 420 QVESVKKALYGI 431 (488)
Q Consensus 420 d~~~la~~i~~l 431 (488)
+..+....+.+.
T Consensus 229 ~~~~~l~~l~~~ 240 (244)
T PRK14138 229 DVVEFANRVMSE 240 (244)
T ss_pred CHHHHHHHHHHH
Confidence 666666665543
No 249
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=63.30 E-value=22 Score=34.86 Aligned_cols=89 Identities=6% Similarity=-0.012 Sum_probs=61.7
Q ss_pred CChHHHHHHHcCCcEEEeCCCCc--ccceeecCCceeEeCC--CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCH
Q 011355 381 LDHTVLEAMLSGKPLMATRLASI--VGSVIVGTDMGYLFSP--QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTA 456 (488)
Q Consensus 381 ~~~~~lEAma~G~PVI~~~~~~~--~~e~v~~~~~g~l~~~--d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~ 456 (488)
++..+-=-|+||-.|+..+..-. -.+.+.....-+-+.. |-.+|.++|..+.++ +++.++++++|++++.+..+.
T Consensus 226 ~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~-~~~A~~IA~~g~~f~~~~L~~ 304 (395)
T PF05686_consen 226 WSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAH-DDEAQRIAENGQRFAREYLTM 304 (395)
T ss_pred eehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccC-hHHHHHHHHHHHHHHHHHhhh
Confidence 34444445788887776542211 0123344444444554 679999999998888 899999999999999998888
Q ss_pred HHHHHHHHHHHHHh
Q 011355 457 TKMAAAYERLFLCI 470 (488)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (488)
+.+..-+..++.+.
T Consensus 305 ~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 305 EDVYCYWRRLLLEY 318 (395)
T ss_pred hHHHHHHHHHHHHH
Confidence 88877666666654
No 250
>PRK06988 putative formyltransferase; Provisional
Probab=63.17 E-value=46 Score=31.39 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=24.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|||+++.. ..+.....++|.+.|++|..+.+.+
T Consensus 2 ~mkIvf~Gs-----------~~~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAY-----------HNVGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeC-----------cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 489999975 2244567778888899987776654
No 251
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.03 E-value=21 Score=32.88 Aligned_cols=196 Identities=14% Similarity=0.065 Sum_probs=105.5
Q ss_pred CCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee--ccccChHH
Q 011355 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL--VKDKGHPL 310 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl--~~~Kg~~~ 310 (488)
++|-.++.-...+.+.+.+ .|++. ..+.|+.- +-.++...+ .++. -...+.+-+..|+- +.+.|...
T Consensus 177 rrc~~vf~rD~~Taq~L~~-rgvna---~~vGnpmm-D~L~p~~~~-~q~l-----~~g~~viaLLPGsR~pea~~nl~~ 245 (412)
T COG4370 177 RRCWAVFPRDALTAQHLAN-RGVNA---AYVGNPMM-DGLPPPERD-PQLL-----LTGVPVIALLPGSRVPEAQTNLAV 245 (412)
T ss_pred ccceeeeccccccHHHHHh-cCCch---hhccChhh-ccCCCccCC-chhh-----ccCCceEEecCCCCChHHHhhHHH
Confidence 5666777777777888877 56643 44445331 112221111 1111 12222444455654 34578888
Q ss_pred HHHHHHHhHhhccCCCCCeEEE--EEeCCCch---hHHhh-----h-----CCcEEEeCccCHHHHHHHHHhcCEEEeCC
Q 011355 311 MFEALKQLLAENDTFRRSTVFL--VAGDGPWG---ARYRD-----L-----GTNVIVLGPLDQTRLAMFYNAIDIFVNPT 375 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~--ivG~g~~~---~~~~~-----l-----~~~V~~~g~v~~~~l~~~~~~adv~v~ps 375 (488)
++.++..+.... ..+.+. ++..-+.. ...+. + .+|..+. .++.+..+++..+|+.+..
T Consensus 246 il~slcal~~~~----a~vvfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l~--lsqqsfadiLH~adaalgm- 318 (412)
T COG4370 246 ILGSLCALPAMF----ALVVFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCSLW--LSQQSFADILHAADAALGM- 318 (412)
T ss_pred HHHHHhhhHHHH----HHHHHHhccCcCCCHHHHHHHHHhcCcchhhhhhccCceEEE--EeHHHHHHHHHHHHHHHHh-
Confidence 888777766544 222211 11111110 01111 1 1343333 3478999999999995531
Q ss_pred CCCCCCChHHHHHHHcCCcEEEeCCCCccc-----c--eeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011355 376 LRAQGLDHTVLEAMLSGKPLMATRLASIVG-----S--VIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARK 448 (488)
Q Consensus 376 ~~~eg~~~~~lEAma~G~PVI~~~~~~~~~-----e--~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~ 448 (488)
-|...=.+...|+|||....-|..- + .-.-|..-.++.++...-+....+++.| ++.....+.++++
T Consensus 319 -----AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~d-p~r~~air~nGqr 392 (412)
T COG4370 319 -----AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGD-PQRLTAIRHNGQR 392 (412)
T ss_pred -----ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcC-hHHHHHHHhcchh
Confidence 1334555899999999986544210 0 0001223344554455555555569998 8988888888888
Q ss_pred HHhh
Q 011355 449 RGLN 452 (488)
Q Consensus 449 ~~~~ 452 (488)
++-+
T Consensus 393 RiGq 396 (412)
T COG4370 393 RIGQ 396 (412)
T ss_pred hccC
Confidence 7754
No 252
>PRK09739 hypothetical protein; Provisional
Probab=62.60 E-value=22 Score=30.91 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=29.5
Q ss_pred CceEEEEEecCCCCCCCCCcH-HHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGL-ERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|||++|..+ | ..+|. ...+..+++.+.+.|++|+++-...
T Consensus 2 ~mmkiliI~~s-p---~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 2 QSMRIYLVWAH-P---RHDSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred CCceEEEEEcC-C---CCCCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 35899999864 2 23443 4456667778888899999887654
No 253
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=62.33 E-value=16 Score=32.80 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=30.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||++.|.+ .....|..+.+.+|+.+|++.|..|.++-..+
T Consensus 1 M~~iai~s----~kGGvG~TTltAnLA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 1 MKVIAIVS----PKGGVGKTTLTANLAWALARLGESVLAIDLDP 40 (243)
T ss_pred CcEEEEec----CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 67666664 22344556778899999999999999998765
No 254
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=62.11 E-value=38 Score=31.42 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=50.4
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCC--CCCCCceEEEecCCCCccCcchh
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSF--PTYPISSLYFHLSKPTAAGYLDQ 148 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~ 148 (488)
+.++|||+++.++ +| .-+..|.++.... +++|.++..+..+... ...+++...+..... .....
T Consensus 86 ~~~~~ri~vl~Sg-------~g--~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~---~~~~~ 153 (286)
T PRK13011 86 PAARPKVLIMVSK-------FD--HCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPD---TKPQQ 153 (286)
T ss_pred cccCceEEEEEcC-------Cc--ccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcC---chhhh
Confidence 3467999999861 23 3345667666544 5787776554322211 113455444432110 11111
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 149 SIVWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
...+....... ++|++++.++. ++..+....+.-+.-+|.
T Consensus 154 ~~~~~~~l~~~----~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK13011 154 EAQVLDVVEES----GAELVVLARYMQVLSPELCRKLAGRAINIHH 195 (286)
T ss_pred HHHHHHHHHHh----CcCEEEEeChhhhCCHHHHhhccCCeEEecc
Confidence 22222222222 89999987643 222222222335666774
No 255
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=26 Score=33.58 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=31.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
-.|.++. +...+|-.+.+..++.+++++|+.+.++|.+.
T Consensus 101 psVimfV-----GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT 139 (483)
T KOG0780|consen 101 PSVIMFV-----GLQGSGKTTTCTKLAYYYKKKGYKVALVCADT 139 (483)
T ss_pred CcEEEEE-----eccCCCcceeHHHHHHHHHhcCCceeEEeecc
Confidence 3455555 24667778889999999999999999999875
No 256
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=61.66 E-value=18 Score=33.83 Aligned_cols=42 Identities=14% Similarity=-0.035 Sum_probs=32.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
.++||+++.....+ ..--.-......+++|.+.||+|..+..
T Consensus 2 ~~~~i~vl~gg~s~--e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSP--EREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCC--chHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47899999975533 4445557788999999999999988743
No 257
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=61.26 E-value=1.3e+02 Score=27.46 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=61.2
Q ss_pred HHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhc-CHH
Q 011355 360 RLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWAD-GRE 437 (488)
Q Consensus 360 ~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~-~~~ 437 (488)
.-..-+..||++|.-...-|++=-++++.. .+.+++....++.. + -......++.+| +...+++.|.+.+.. +|+
T Consensus 45 ~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~-~-~~~~dPH~Wldp~n~~~~a~~I~~~L~~~dP~ 121 (264)
T cd01020 45 TDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHD-D-KEGDNPHLWYDPETMSKVANALADALVKADPD 121 (264)
T ss_pred HHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeeccccc-C-CCCCCCceecCHhHHHHHHHHHHHHHHHhCcc
Confidence 344667889998875432355544555544 35566665444321 1 011245577788 888888888887762 266
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 438 VLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 438 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
......+|+.++..+ .+..-+.+.+.+..
T Consensus 122 ~~~~y~~N~~~~~~~---l~~l~~~~~~~~~~ 150 (264)
T cd01020 122 NKKYYQANAKKFVAS---LKPLAAKIAELSAK 150 (264)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 666666777766644 44444555555443
No 258
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=60.64 E-value=30 Score=32.04 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 94 GLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 94 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
|+...=...+.+|.+.||+|.|+-.-.++.
T Consensus 8 GAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~ 37 (329)
T COG1087 8 GAGYIGSHTVRQLLKTGHEVVVLDNLSNGH 37 (329)
T ss_pred CcchhHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 333333467788889999999997665443
No 259
>PLN02206 UDP-glucuronate decarboxylase
Probab=60.51 E-value=56 Score=32.60 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=24.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
+.|||++... .|-+++ .|++.|.++|++|.++..
T Consensus 118 ~~~kILVTGa-------tGfIGs---~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGG-------AGFVGS---HLVDRLMARGDSVIVVDN 151 (442)
T ss_pred CCCEEEEECc-------ccHHHH---HHHHHHHHCcCEEEEEeC
Confidence 4589887752 343333 688999999999998754
No 260
>PRK06756 flavodoxin; Provisional
Probab=60.08 E-value=19 Score=29.47 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=30.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++.. +..|..+..+..+++.|.+.|++|.++...
T Consensus 2 mkv~IiY~-----S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~ 39 (148)
T PRK06756 2 SKLVMIFA-----SMSGNTEEMADHIAGVIRETENEIEVIDIM 39 (148)
T ss_pred ceEEEEEE-----CCCchHHHHHHHHHHHHhhcCCeEEEeehh
Confidence 68888864 267888888999999999999999887554
No 261
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.01 E-value=34 Score=31.97 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=27.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSF 125 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~ 125 (488)
+|||+|+.. ..+...-.++|.+.||||.-+...++....
T Consensus 1 ~mkivF~GT-----------p~fa~~~L~~L~~~~~eivaV~Tqpdkp~g 39 (307)
T COG0223 1 MMRIVFFGT-----------PEFAVPSLEALIEAGHEIVAVVTQPDKPAG 39 (307)
T ss_pred CcEEEEEcC-----------chhhHHHHHHHHhCCCceEEEEeCCCCccC
Confidence 489999875 223445667888889998888777655443
No 262
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=60.00 E-value=17 Score=33.03 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=29.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
++|||++..+. |=...-+..|+++|.+.| +|+|+++......
T Consensus 4 ~~M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 4 KKPHILVCNDD-------GIEGEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCEEEEECCC-------CCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 67999988752 111224567889998887 8999998765443
No 263
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=59.56 E-value=39 Score=29.89 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCCCCceEEEEEecCCCCCCCCCcHHHHHHHHH-HHHHHCCCeEEEEecC
Q 011355 70 SNPPLKLLKIALFVKKWPHRSHAGGLERHALTLH-LALAKRGHELHIFTAS 119 (488)
Q Consensus 70 ~~~~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~-~~L~~~G~~V~v~~~~ 119 (488)
.+.+++.|||++|+.+ ...|-..+.+.+.+ +.+.+.|.+|.++...
T Consensus 20 ~~~~~~~~kI~~I~GS----lR~~S~n~~la~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 20 ATHKPHIPRILLLYGS----LRERSYSRLLAEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred CCCCCCCCEEEEEECC----CCCcchHHHHHHHHHHHHhhcCCEEEEeCcc
Confidence 4667788999999973 34455555444444 4444469999998754
No 264
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=59.01 E-value=12 Score=32.54 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|..++++ +|| ..|-.+++.+|++.|++.+|+|..++..
T Consensus 1 mpLiIlT-GyP----gsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILT-GYP----GSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CceEEEe-cCC----CCCchHHHHHHHHHHHHhhhhccccchh
Confidence 4455555 554 3778899999999999999999887764
No 265
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=58.71 E-value=98 Score=28.28 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=25.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC---CCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR---GHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~---G~~V~v~~~~~~~~~ 124 (488)
||||+..+. +-..-| +..|+++|.+. |++|+|+++..+...
T Consensus 1 M~ILlTNDD---GI~a~G----l~aL~~~l~~~~~~~~~V~VVAP~~eqSg 44 (261)
T PRK13931 1 MRILITNDD---GINAPG----LEVLEQIATELAGPDGEVWTVAPAFEQSG 44 (261)
T ss_pred CeEEEEcCC---CCCCHh----HHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 788888752 112223 34566666653 479999998865443
No 266
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=58.47 E-value=30 Score=26.80 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEEEeC
Q 011355 99 ALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 99 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~ 171 (488)
+.+.++++++.|+++.++...++.........+...+....+......+........ ++. +.|.+|--
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia----~~~-g~~~i~pG 81 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIA----RKE-GADAIHPG 81 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHH----HHT-TESEEEST
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHh----hhh-cCcccccc
Confidence 678999999999999999887644332222233333333232222333333333322 222 78888754
No 267
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=58.33 E-value=73 Score=26.63 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=33.2
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
+|+|+=|+. ...+|=.+.+..+++.|.++|+.|-++--...+
T Consensus 1 m~~Il~ivG-----~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIVG-----YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEEe-----cCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 367777763 267888899999999999999999998665443
No 268
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=58.23 E-value=1.9e+02 Score=28.40 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=53.7
Q ss_pred CeEEEEEeCCCchhH--HhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCC-CCChHHHH-HHHcCCcEEEeCCCCc
Q 011355 328 STVFLVAGDGPWGAR--YRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQ-GLDHTVLE-AMLSGKPLMATRLASI 403 (488)
Q Consensus 328 ~~~l~ivG~g~~~~~--~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~e-g~~~~~lE-Ama~G~PVI~~~~~~~ 403 (488)
--.+.|+++...+.. .++++ ...++-+++..++..+|+++..+.-++ -.+...+| ++.-....+..|.+-.
T Consensus 202 ~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 202 VKKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred CCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence 357788887544322 33343 234567899999999999888542111 12222333 3333344567777665
Q ss_pred ccceeecCC----ceeEeCCCHHHHHHHHHHHHh
Q 011355 404 VGSVIVGTD----MGYLFSPQVESVKKALYGIWA 433 (488)
Q Consensus 404 ~~e~v~~~~----~g~l~~~d~~~la~~i~~ll~ 433 (488)
+ + +.++. +-+++ |++++.....+-+.
T Consensus 277 R-d-ie~~v~~l~~v~l~--~iDDL~~iv~~n~~ 306 (414)
T COG0373 277 R-D-VEPEVGELPNVFLY--TIDDLEEIVEENLE 306 (414)
T ss_pred C-C-CCccccCcCCeEEE--ehhhHHHHHHHhHH
Confidence 4 3 33322 23444 67777766665443
No 269
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=57.75 E-value=1.4e+02 Score=26.57 Aligned_cols=118 Identities=9% Similarity=0.046 Sum_probs=62.5
Q ss_pred CeEEEEEeCCCchhHHhhhC--CcEEEeCc-cCHHHHHHHHHhcCEEEeCCCCCCCCChHH-HHHHHcCCcEEEeCCCCc
Q 011355 328 STVFLVAGDGPWGARYRDLG--TNVIVLGP-LDQTRLAMFYNAIDIFVNPTLRAQGLDHTV-LEAMLSGKPLMATRLASI 403 (488)
Q Consensus 328 ~~~l~ivG~g~~~~~~~~l~--~~V~~~g~-v~~~~l~~~~~~adv~v~ps~~~eg~~~~~-lEAma~G~PVI~~~~~~~ 403 (488)
..+++|+...- .++++++. .+|.+... ...+ .+..+++++..+-. +.....+ -+|-+.|.+|.+.+.+..
T Consensus 48 gA~VtVVap~i-~~el~~l~~~~~i~~~~r~~~~~----dl~g~~LViaATdD-~~vN~~I~~~a~~~~~lvn~vd~p~~ 121 (223)
T PRK05562 48 GCYVYILSKKF-SKEFLDLKKYGNLKLIKGNYDKE----FIKDKHLIVIATDD-EKLNNKIRKHCDRLYKLYIDCSDYKK 121 (223)
T ss_pred CCEEEEEcCCC-CHHHHHHHhCCCEEEEeCCCChH----HhCCCcEEEECCCC-HHHHHHHHHHHHHcCCeEEEcCCccc
Confidence 45677776432 22333332 45666542 2223 34677877766532 3333333 445577999988776554
Q ss_pred ccce-----eecCCceeEeC-----C-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 011355 404 VGSV-----IVGTDMGYLFS-----P-QVESVKKALYGIWADGREVLEKKGLVARKRGLNL 453 (488)
Q Consensus 404 ~~e~-----v~~~~~g~l~~-----~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~ 453 (488)
. +. +..+.--+-+. | =...+.+.|++++.+ -+.+.+.....|+.+.++
T Consensus 122 ~-dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~-~~~l~~~l~~~R~~vk~~ 180 (223)
T PRK05562 122 G-LCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKK-YDDFIEYVTKIRNKAKKN 180 (223)
T ss_pred C-eEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 3 33 33333222232 2 245666677777744 455555555666666553
No 270
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=57.27 E-value=60 Score=30.57 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=23.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+|+.. ..+.....++|.+.||++..+...+
T Consensus 1 mkIvf~G~-----------~~~a~~~L~~L~~~~~~i~~Vvt~~ 33 (309)
T PRK00005 1 MRIVFMGT-----------PEFAVPSLKALLESGHEVVAVVTQP 33 (309)
T ss_pred CEEEEECC-----------CHHHHHHHHHHHHCCCcEEEEECCC
Confidence 89999975 2245577788877789877555443
No 271
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=57.09 E-value=1.3e+02 Score=26.22 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=67.5
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhC--CcEEEeC-ccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHH
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLG--TNVIVLG-PLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEA 388 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~--~~V~~~g-~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEA 388 (488)
...+..|.+. ..+++++..... +.++++. .+|.+.. ... ...+..+|+++..+-..+---...-+|
T Consensus 22 ~rk~~~Ll~~------ga~VtVvsp~~~-~~l~~l~~~~~i~~~~~~~~----~~dl~~~~lVi~at~d~~ln~~i~~~a 90 (205)
T TIGR01470 22 LRKARLLLKA------GAQLRVIAEELE-SELTLLAEQGGITWLARCFD----ADILEGAFLVIAATDDEELNRRVAHAA 90 (205)
T ss_pred HHHHHHHHHC------CCEEEEEcCCCC-HHHHHHHHcCCEEEEeCCCC----HHHhCCcEEEEECCCCHHHHHHHHHHH
Confidence 4444555553 345566654332 3333332 3676654 322 234677888766442222212345567
Q ss_pred HHcCCcEEEeCCCCccc----ceeecCCceeEeCC------CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhC
Q 011355 389 MLSGKPLMATRLASIVG----SVIVGTDMGYLFSP------QVESVKKALYGIWADGREVLEKKGLVARKRGLNLF 454 (488)
Q Consensus 389 ma~G~PVI~~~~~~~~~----e~v~~~~~g~l~~~------d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~f 454 (488)
-..|+||-+.+.+.... .++..+.--+-+.. =...+.+.|++++...-+.+..+....|+.+.+..
T Consensus 91 ~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~~~~~~~~R~~~k~~~ 166 (205)
T TIGR01470 91 RARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPPSLGDLATLAATWRDAVKKRL 166 (205)
T ss_pred HHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhC
Confidence 78899997776555431 23344433333322 24455666666664324445555666677776543
No 272
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=56.21 E-value=22 Score=28.88 Aligned_cols=34 Identities=35% Similarity=0.458 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEE
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHI 115 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v 115 (488)
||++++.. +..|..+..+..+++.|...|++|.+
T Consensus 1 M~i~IiY~-----S~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYL-----SLSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEE-----CCCChHHHHHHHHHHHHhhCCeeEEe
Confidence 78888864 26688888899999999989999873
No 273
>PRK05723 flavodoxin; Provisional
Probab=56.03 E-value=21 Score=29.53 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=29.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFT 117 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 117 (488)
|||.|+.. +..|-.+..+..+++.|.+.|++|.++.
T Consensus 1 ~~i~I~yg-----S~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSG-----SVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEE-----cCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 68888853 3788889999999999999999997754
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=55.60 E-value=80 Score=29.08 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.++++..++. ....|=.+.+..|+..|++.|+.|.+++.+.
T Consensus 70 ~~~~vi~l~G-----~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVG-----VNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEEC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4457666663 2446777788999999999999999998764
No 275
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=55.59 E-value=61 Score=33.13 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=55.4
Q ss_pred cEEEeCccCHHHHHHHHHhcCEEEeCCC--CCCCCChHHHHHHHcC---CcEEEeCCCCcccceeecCCceeEeCC---C
Q 011355 349 NVIVLGPLDQTRLAMFYNAIDIFVNPTL--RAQGLDHTVLEAMLSG---KPLMATRLASIVGSVIVGTDMGYLFSP---Q 420 (488)
Q Consensus 349 ~V~~~g~v~~~~l~~~~~~adv~v~ps~--~~eg~~~~~lEAma~G---~PVI~~~~~~~~~e~v~~~~~g~l~~~---d 420 (488)
+..|.-.++.+-+.++-...+++|.-.- ...|||..++|+++.- +||+.-. ++++.+.++...-+... |
T Consensus 534 d~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lg---lpd~fi~hg~~~el~~~~gLd 610 (627)
T COG1154 534 DPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLG---LPDEFIDHGSPEELLAELGLD 610 (627)
T ss_pred cCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCCCceEEec---CChHhhccCCHHHHHHHcCCC
Confidence 4456667887778889899999876321 1368999999988754 4555433 34366666654444443 7
Q ss_pred HHHHHHHHHHHHhc
Q 011355 421 VESVKKALYGIWAD 434 (488)
Q Consensus 421 ~~~la~~i~~ll~~ 434 (488)
.+.+++.|..++..
T Consensus 611 ~~~i~~~i~~~l~~ 624 (627)
T COG1154 611 AEGIARRILEWLKA 624 (627)
T ss_pred HHHHHHHHHHHHhh
Confidence 78888887777654
No 276
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=55.43 E-value=38 Score=33.30 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=33.0
Q ss_pred CCCCceEEEEEecCCCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 72 PPLKLLKIALFVKKWPHRSHAGGLE--RHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 72 ~~~~~mkIl~i~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.+..+|+|+.|.. ..||++ +.+.+|+.+|+..|+.|.++-.++.
T Consensus 116 ~~~~~~~vIav~n------~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 116 RGSEHLQVIAVTN------FKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred CCCCCceEEEEEc------CCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 3445788777775 445554 5688999999999999999977653
No 277
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=55.31 E-value=95 Score=25.95 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
...|=.+.+.+|+..|++.|+.|.++-.+...
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 34455567889999999999999999876543
No 278
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=55.16 E-value=30 Score=29.94 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=27.5
Q ss_pred ceEEEEEecCCCCCCCCCcHHHH--HHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERH--ALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~--~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+||++-.. ||...+ +..+++.|.+.|++|.++.+..
T Consensus 5 ~k~IllgVT--------Gsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 5 GKRIGFGLT--------GSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCEEEEEEc--------CHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 357776654 444433 4899999999999999998764
No 279
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=55.07 E-value=38 Score=31.45 Aligned_cols=104 Identities=10% Similarity=0.029 Sum_probs=49.6
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCC--CCCCceEEEecCCCCccCcchh
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFP--TYPISSLYFHLSKPTAAGYLDQ 148 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~ 148 (488)
+.++|||+++.++ +| .-+..|+++.... +++|.++..+..+.... ..+++...+..... .....
T Consensus 86 ~~~~~ri~vl~Sg-------~g--snl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~---~~~~~ 153 (286)
T PRK06027 86 SAERKRVVILVSK-------ED--HCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKE---TKAEA 153 (286)
T ss_pred cccCcEEEEEEcC-------CC--CCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCcc---ccchh
Confidence 3477899999861 23 2344666666553 57877776654322111 13444444332210 11112
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 149 SIVWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
........... ++|+|++.++. ++..+....|.-+.-+|.
T Consensus 154 ~~~~~~~l~~~----~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK06027 154 EARLLELIDEY----QPDLVVLARYMQILSPDFVARFPGRIINIHH 195 (286)
T ss_pred HHHHHHHHHHh----CCCEEEEecchhhcCHHHHhhccCCceecCc
Confidence 22222222222 89999987643 222222222334566664
No 280
>PLN02778 3,5-epimerase/4-reductase
Probab=54.93 E-value=21 Score=33.40 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=24.7
Q ss_pred CCCCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEE
Q 011355 71 NPPLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHI 115 (488)
Q Consensus 71 ~~~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v 115 (488)
++.+.+|||++... .|-.+. .|++.|.++||+|++
T Consensus 4 ~~~~~~~kiLVtG~-------tGfiG~---~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 4 TAGSATLKFLIYGK-------TGWIGG---LLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCCCCeEEEECC-------CCHHHH---HHHHHHHhCCCEEEE
Confidence 45557799888753 233333 688999999999874
No 281
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=54.81 E-value=1e+02 Score=24.27 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=45.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRG-HELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQL 155 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 155 (488)
||+.++...-|. ..-....++.+++++.+.| ++|.+|-..+.-........ | ....++....|..+
T Consensus 1 m~~~Ivvt~ppY---g~q~a~~A~~fA~all~~gh~~v~iFly~DgV~~~~~~~~---------P-a~dEf~l~~~~~~l 67 (126)
T COG1553 1 MKYTIVVTGPPY---GTESAFSALRFAEALLEQGHELVRLFLYQDGVHNGNKGQK---------P-ASDEFNLIQAWLEL 67 (126)
T ss_pred CeEEEEEecCCC---ccHHHHHHHHHHHHHHHcCCeEEEEEEeeccccccccCCC---------C-cccccchHHHHHHH
Confidence 788888764332 1123456789999999985 78999888764322211111 1 01134455566655
Q ss_pred HHHhcCCCCCcEEEeC
Q 011355 156 QTQNSTGKPFDVIHTE 171 (488)
Q Consensus 156 ~~~~~~~~~~Dvv~~~ 171 (488)
.... +.++-.|-
T Consensus 68 ~~~~----gv~v~~C~ 79 (126)
T COG1553 68 LTEQ----GVPVKLCV 79 (126)
T ss_pred HHHc----CCcEeeeH
Confidence 5544 67776663
No 282
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=54.78 E-value=1.7e+02 Score=27.18 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=23.0
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
||++|+.+ |..-..|. --.+..++++|++|.+++.+.+.
T Consensus 2 rvL~V~AH-PDDE~l~~-----GGtiA~~a~~G~~V~vV~~T~Ge 40 (283)
T TIGR03446 2 RLMAVHAH-PDDESSKG-----AATMARYAAEGHDVMVVTCTGGE 40 (283)
T ss_pred eEEEEEeC-CCcHHHhH-----HHHHHHHHHCCCeEEEEEecCCC
Confidence 67888753 32222222 23344566689999988877543
No 283
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=54.52 E-value=73 Score=25.39 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=45.2
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeE-EEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHEL-HIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V-~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
|++++...-| ..+-..+..+.+++++.+.||+| .|+-..+.-...... ..|.. ...++...|..+.
T Consensus 1 ~~~iv~~~~P---~~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~---------q~p~~-~~~n~~~~~~~L~ 67 (127)
T TIGR03012 1 KYTLLVTGPP---YGTQAASSAYQFAQALLAKGHEIVRVFFYQDGVLNANNL---------VSPAS-DEFDLVAAWQQLA 67 (127)
T ss_pred CEEEEEeCCC---CCcHHHHHHHHHHHHHHHCCCcEEEEEEehHHHHhhccC---------CCCcc-ccccHHHHHHHHH
Confidence 3555554433 23445678889999999999994 777776532211110 11111 2235566777666
Q ss_pred HHhcCCCCCcEEEeCC
Q 011355 157 TQNSTGKPFDVIHTES 172 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~ 172 (488)
... +.++.+|.+
T Consensus 68 ~~~----~i~l~vC~~ 79 (127)
T TIGR03012 68 QEH----QVDLVVCVA 79 (127)
T ss_pred Hhc----CCEEEeeHH
Confidence 444 678887754
No 284
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=53.07 E-value=30 Score=32.53 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=28.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
||+++++. ....|=.+.+..++-+++++|+.|.+++.++..
T Consensus 1 ~r~~~~~G-----KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGG-----KGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEE-----STTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEec-----CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 78899984 233344455666888889999999999887643
No 285
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=52.72 E-value=37 Score=31.57 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=22.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++.. .|=.+ ..+.+.|.++|++|..++..
T Consensus 1 MriLI~Ga-------sG~lG---~~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGA-------SGFLG---SALARALKERGYEVIATSRS 33 (286)
T ss_dssp EEEEEETT-------TSHHH---HHHHHHHTTTSEEEEEESTT
T ss_pred CEEEEECC-------CCHHH---HHHHHHHhhCCCEEEEeCch
Confidence 89999974 12222 26788898889888777443
No 286
>PRK05920 aromatic acid decarboxylase; Validated
Probab=52.60 E-value=32 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=28.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+||++-.. . +.+...+..+++.|.+.|++|.++....
T Consensus 3 ~krIllgIT------G-siaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAIT------G-ASGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEe------C-HHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 357777764 2 2333578899999999999999998764
No 287
>PRK08267 short chain dehydrogenase; Provisional
Probab=52.05 E-value=20 Score=32.48 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=24.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||.++|+. ..||... .+++.|.++|++|.++....
T Consensus 1 mk~vlItG------asg~iG~---~la~~l~~~G~~V~~~~r~~ 35 (260)
T PRK08267 1 MKSIFITG------AASGIGR---ATALLFAAEGWRVGAYDINE 35 (260)
T ss_pred CcEEEEeC------CCchHHH---HHHHHHHHCCCeEEEEeCCH
Confidence 56555653 4466655 68888999999999887543
No 288
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=51.75 E-value=37 Score=31.66 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=30.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
|||++..- ...|=.+.+.+|+.+|++.|+.|.++-.++..
T Consensus 1 m~ia~~gK------GGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 1 MKLAVYGK------GGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred CeEEEECC------CCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 78777653 22344467889999999999999999887653
No 289
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=51.65 E-value=1.5e+02 Score=25.04 Aligned_cols=76 Identities=7% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHH
Q 011355 359 TRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIW 432 (488)
Q Consensus 359 ~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll 432 (488)
++....+. ..|+++.-...++.-|..+++.+....|||........+ +.+..|..|++..| +.+++.++|..++
T Consensus 37 ~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~ 116 (196)
T PRK10360 37 REALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVA 116 (196)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 34444443 357777643223444667777777778887653322221 23456778999999 9999999999887
Q ss_pred hc
Q 011355 433 AD 434 (488)
Q Consensus 433 ~~ 434 (488)
..
T Consensus 117 ~~ 118 (196)
T PRK10360 117 TG 118 (196)
T ss_pred cC
Confidence 63
No 290
>PRK06179 short chain dehydrogenase; Provisional
Probab=51.37 E-value=1.1e+02 Score=27.74 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||.+. .+++.|.++|++|.+++...
T Consensus 5 ~~vlVtG------asg~iG~---~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTG------ASSGIGR---ATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEec------CCCHHHH---HHHHHHHHCCCEEEEEeCCh
Confidence 4556653 4566665 68888999999998887654
No 291
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=50.80 E-value=28 Score=33.07 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=27.3
Q ss_pred CCCcHH--HHHHHHHHHHHHCCCeEEEEecCCCCCCC
Q 011355 91 HAGGLE--RHALTLHLALAKRGHELHIFTASCLNCSF 125 (488)
Q Consensus 91 ~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~~~~ 125 (488)
..||.+ -.+..|++.|.++|+.+.|++........
T Consensus 44 tvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~ 80 (326)
T PF02606_consen 44 TVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRKSK 80 (326)
T ss_pred ccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCC
Confidence 445554 46889999999999999999998765433
No 292
>PRK12342 hypothetical protein; Provisional
Probab=50.69 E-value=1.5e+02 Score=27.07 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
..+-...++.+.+-.|++.|.+|++++..+..
T Consensus 32 ~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~ 63 (254)
T PRK12342 32 KISQFDLNAIEAASQLATDGDEIAALTVGGSL 63 (254)
T ss_pred cCChhhHHHHHHHHHHhhcCCEEEEEEeCCCh
Confidence 45666788999999999779999999998754
No 293
>PRK06703 flavodoxin; Provisional
Probab=49.80 E-value=34 Score=28.10 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=30.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||++++-. +..|..+..+..+++.|...|++|.+.-..
T Consensus 2 mkv~IiY~-----S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 2 AKILIAYA-----SMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CeEEEEEE-----CCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 67777764 266888889999999999999999987654
No 294
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=49.56 E-value=35 Score=28.13 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=31.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++.. +..|..+..+..+++.|...|++|.+.....
T Consensus 2 ~ki~Ivy~-----S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~ 40 (151)
T COG0716 2 MKILIVYG-----SRTGNTEKVAEIIAEELGADGFEVDIDIRPG 40 (151)
T ss_pred CeEEEEEE-----cCCCcHHHHHHHHHHHhccCCceEEEeecCC
Confidence 68888875 3678999999999999999999996655543
No 295
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=49.51 E-value=28 Score=28.95 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=27.6
Q ss_pred HHHHHHh-cCEEEeCCC---C--CCCCChHHHHHHHcCCcEEEeCC
Q 011355 361 LAMFYNA-IDIFVNPTL---R--AQGLDHTVLEAMLSGKPLMATRL 400 (488)
Q Consensus 361 l~~~~~~-adv~v~ps~---~--~eg~~~~~lEAma~G~PVI~~~~ 400 (488)
+..-+.. +|++|..-. . +.||--.+.||++.|+||++.-.
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~ 131 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVP 131 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEEC
Confidence 3344444 999887532 1 33566778999999999998743
No 296
>PRK06398 aldose dehydrogenase; Validated
Probab=49.34 E-value=1.5e+02 Score=26.78 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=24.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..+|... .+++.|.+.|++|.++....
T Consensus 7 k~vlItG------as~gIG~---~ia~~l~~~G~~Vi~~~r~~ 40 (258)
T PRK06398 7 KVAIVTG------GSQGIGK---AVVNRLKEEGSNVINFDIKE 40 (258)
T ss_pred CEEEEEC------CCchHHH---HHHHHHHHCCCeEEEEeCCc
Confidence 5566664 4577766 57889999999998876543
No 297
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=49.12 E-value=2.5e+02 Score=26.88 Aligned_cols=97 Identities=6% Similarity=-0.081 Sum_probs=51.4
Q ss_pred HHHHhcCEEEeCCC-CCCCCChHHHHHHHcCCcEEEeCCCCcccce--eecCCceeEeCCCHHHHHHHHHHHHhcCHHHH
Q 011355 363 MFYNAIDIFVNPTL-RAQGLDHTVLEAMLSGKPLMATRLASIVGSV--IVGTDMGYLFSPQVESVKKALYGIWADGREVL 439 (488)
Q Consensus 363 ~~~~~adv~v~ps~-~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~--v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~ 439 (488)
.+...+|+++..|. .+...|....|.+..-.+-+.-|..-.+ ++ +....+..++ |.++|.+.+.+-+.. +
T Consensus 222 ~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR-dId~v~~~~~v~Ly--~iDdL~~i~~~n~~~----R 294 (338)
T PRK00676 222 SFQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR-TFPWSETPFPHRYL--DMDFISEWVQKHLQC----R 294 (338)
T ss_pred hcccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC-CCccccccCCcEEE--EhHHHHHHHHHHHHH----H
Confidence 66789999997531 1234466666665532213445544433 32 1223333444 788888777664333 3
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 440 EKKGLVARKRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 440 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
++....+... .+..+.++.+.|++-..
T Consensus 295 ~~~~~~ae~i------I~~~~~~~~~~~~~~~~ 321 (338)
T PRK00676 295 KEVNNKHKLS------LREAAYKQWESYEKKLS 321 (338)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHh
Confidence 3333333333 45566677777766444
No 298
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=49.05 E-value=50 Score=32.29 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=32.3
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+..+|+|+.++. .....|-.+.+.+|+.+|+..|+.|.++-.++
T Consensus 100 ~g~~~~vI~v~n----~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 100 GGEHLQVIAVTN----FKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCCCceEEEEEc----cCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 346788877775 22333444668899999999999999998765
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=48.67 E-value=2.1e+02 Score=27.22 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
++..|.+... ...|=.+.+..++..|.+.|+.|.|++.++...
T Consensus 55 ~~~~igi~G~------~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGV------PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECC------CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 3445555543 457778888899999999999999999987544
No 300
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=48.54 E-value=60 Score=27.89 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=49.5
Q ss_pred cEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch-hHHhhh-C--CcEEEeCccCHHHHHHHHHhc
Q 011355 293 SLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG-ARYRDL-G--TNVIVLGPLDQTRLAMFYNAI 368 (488)
Q Consensus 293 ~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~-~~~~~l-~--~~V~~~g~v~~~~l~~~~~~a 368 (488)
+.+++.+.+.++.... ...++.+++++ |+.++++....+.. +..++. . ..+.+.+.=....+..+++.-
T Consensus 22 ~~iWiHa~SvGE~~a~---~~Li~~l~~~~----p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~ 94 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAA---RPLIKRLRKQR----PDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHW 94 (186)
T ss_dssp T-EEEE-SSHHHHHHH---HHHHHHHTT-------TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHH---HHHHHHHHHhC----CCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHh
Confidence 3677787777665544 44455566666 88999888764433 333332 2 345554432245567777754
Q ss_pred --CEEEeCCCCCCCCChHHHHHHHcCCcEEEeC
Q 011355 369 --DIFVNPTLRAQGLDHTVLEAMLSGKPLMATR 399 (488)
Q Consensus 369 --dv~v~ps~~~eg~~~~~lEAma~G~PVI~~~ 399 (488)
|++|.-- .|=+|+-+.+|-..|+|++.-|
T Consensus 95 ~P~~~i~~E--tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 95 RPDLLIWVE--TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp --SEEEEES------HHHHHH-----S-EEEEE
T ss_pred CCCEEEEEc--cccCHHHHHHHhhcCCCEEEEe
Confidence 8877754 4788999999999999999875
No 301
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=48.53 E-value=19 Score=40.31 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=34.1
Q ss_pred CCCCceEEEEEecCCCCCCCCCcHH------HHHHHHHHHHHHCCCeEE
Q 011355 72 PPLKLLKIALFVKKWPHRSHAGGLE------RHALTLHLALAKRGHELH 114 (488)
Q Consensus 72 ~~~~~mkIl~i~~~~p~~~~~gG~~------~~~~~l~~~L~~~G~~V~ 114 (488)
.|....||++|..+|||+...-|.. ..+.++.+.|++.||+|.
T Consensus 245 kpN~eKKVAII~yNyPpg~~nIGaA~gLDvp~Sl~~IL~~Lke~GY~v~ 293 (1098)
T PF02514_consen 245 KPNAEKKVAIIYYNYPPGKGNIGAAAGLDVPESLVNILKALKEEGYDVG 293 (1098)
T ss_pred ccccccEEEEEEecCCCCCCcccccCCCCcHHHHHHHHHHHHHCCCCCC
Confidence 3344459999999999875555554 678899999999999995
No 302
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=48.44 E-value=63 Score=28.21 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~ 121 (488)
..||++.+++ .....|-.+.+.+|+.+|++ .|++|.++-....
T Consensus 33 ~~~~vi~v~s----~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 33 KNNNLIMVTS----SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCCeEEEEEC----CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 4577766665 23455667778999999996 6999999977653
No 303
>PRK10037 cell division protein; Provisional
Probab=48.40 E-value=35 Score=30.91 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=28.8
Q ss_pred eEEEEEecCCCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLE--RHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+-+.. ..||++ +.+.+|+.+|+++|+.|.++-.++
T Consensus 1 ~~~iav~n------~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 1 MAILGLQG------VRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred CcEEEEec------CCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 66555554 456665 457899999999999999997765
No 304
>PRK07308 flavodoxin; Validated
Probab=48.40 E-value=53 Score=26.77 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..|..+..+..+++.|.+.|++|.+.-..
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 56888899999999999999999886554
No 305
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=48.38 E-value=1.4e+02 Score=26.28 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH-----cCCcEEEeC--CCCcccceeecCCceeEeCC-CHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML-----SGKPLMATR--LASIVGSVIVGTDMGYLFSP-QVESVKKA 427 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma-----~G~PVI~~~--~~~~~~e~v~~~~~g~l~~~-d~~~la~~ 427 (488)
-++...++. +.|+.++=-+-+.|-|+.++..+- +.+-+|+.. ...+. +.+..|...+++.| ..+-|.++
T Consensus 35 ~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~-~alr~Gv~DYLiKPf~~eRl~~a 113 (224)
T COG4565 35 LEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIK-EALRYGVVDYLIKPFTFERLQQA 113 (224)
T ss_pred HHHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHH-HHHhcCchhheecceeHHHHHHH
Confidence 445555555 567766543345677888887776 444445432 22333 55666778899999 99999999
Q ss_pred HHHHHhc
Q 011355 428 LYGIWAD 434 (488)
Q Consensus 428 i~~ll~~ 434 (488)
+.+....
T Consensus 114 L~~y~~~ 120 (224)
T COG4565 114 LTRYRQK 120 (224)
T ss_pred HHHHHHH
Confidence 8887654
No 306
>PRK11519 tyrosine kinase; Provisional
Probab=48.08 E-value=1.7e+02 Score=31.36 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=32.2
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+-|++.+++. ...-|-...+.+|+..|+..|+.|.++-.+..
T Consensus 525 ~~kvi~vts~----~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGV----SPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECC----CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3477777762 24457777899999999999999999977543
No 307
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=48.07 E-value=8.8 Score=39.00 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 93 GGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 93 gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+..-..+..++++|+++||+|+++++..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4556788999999999999999999865
No 308
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=48.04 E-value=54 Score=29.36 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLE--RHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||..+.. ..||++ +.+.+|+.+|+++|+.|.++-.++.
T Consensus 1 M~iI~v~n------~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ 41 (231)
T PRK13849 1 MKLLTFCS------FKGGAGKTTALMGLCAALASDGKRVALFEADEN 41 (231)
T ss_pred CeEEEEEC------CCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 56665654 456655 5678999999999999999987753
No 309
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=47.91 E-value=28 Score=29.69 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||++++-. +..|-.+..+..+++.|.. |++|.++-..
T Consensus 1 MkilIvY~-----S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~ 37 (177)
T PRK11104 1 MKTLILYS-----SRDGQTRKIASYIASELKE-GIQCDVVNLH 37 (177)
T ss_pred CcEEEEEE-----CCCChHHHHHHHHHHHhCC-CCeEEEEEhh
Confidence 78888864 2567777778888999987 9999887654
No 310
>PLN02285 methionyl-tRNA formyltransferase
Probab=47.30 E-value=1.6e+02 Score=28.03 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH------CCCeEEEEecCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAK------RGHELHIFTASCLN 122 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~------~G~~V~v~~~~~~~ 122 (488)
++|||+|+.+. .+.....++|.+ .+++|..+...++.
T Consensus 5 ~~~kI~f~Gt~-----------~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~ 47 (334)
T PLN02285 5 RKKRLVFLGTP-----------EVAATVLDALLDASQAPDSAFEVAAVVTQPPA 47 (334)
T ss_pred CccEEEEEECC-----------HHHHHHHHHHHhhhhccCCCCeEEEEEeCCCC
Confidence 67999999751 122234444444 36887776655433
No 311
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=47.28 E-value=46 Score=31.11 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=31.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++....-+ ...-.-.....++++|.+.||+|.++...
T Consensus 1 ~~v~v~~gg~s~--e~~~sl~s~~~i~~al~~~g~~~~~i~~~ 41 (299)
T PRK14571 1 MRVALLMGGVSR--EREISLRSGERVKKALEKLGYEVTVFDVD 41 (299)
T ss_pred CeEEEEeCCCCC--CccchHHHHHHHHHHHHHcCCeEEEEccC
Confidence 789999876533 44444567889999999999999998654
No 312
>PRK04155 chaperone protein HchA; Provisional
Probab=47.27 E-value=70 Score=29.73 Aligned_cols=46 Identities=22% Similarity=0.109 Sum_probs=29.9
Q ss_pred CceEEEEEecCCCCCC----C--CCcH-HHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRS----H--AGGL-ERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~----~--~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..+|||+|....-.-. . ..|. +.-+..-...|.+.|++|++.+...
T Consensus 48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 4459999986432111 1 1233 3445556788999999999999864
No 313
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=47.19 E-value=2.5e+02 Score=27.89 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=30.9
Q ss_pred EEEEeeec-cccChHHHHHHH-HHhHhhccCCCCCeEEEEEeCCCchhH
Q 011355 296 LGMAGRLV-KDKGHPLMFEAL-KQLLAENDTFRRSTVFLVAGDGPWGAR 342 (488)
Q Consensus 296 i~~~Grl~-~~Kg~~~ll~a~-~~l~~~~~~~~~~~~l~ivG~g~~~~~ 342 (488)
|+..|... ...|=+.++.++ ..|++.. |++.++|....|....
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~----p~~~i~v~S~~P~~t~ 47 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILN----PHAEVDVMSRYPVSSS 47 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhC----CCCeEEEEecCccchh
Confidence 44566654 467888777766 5677777 9999999988776543
No 314
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=47.13 E-value=62 Score=26.48 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
...|....+.+|+..|++.|+.|.++-....
T Consensus 10 ~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 10 GGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp TTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 5678889999999999999999888877653
No 315
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=47.04 E-value=29 Score=30.69 Aligned_cols=32 Identities=34% Similarity=0.451 Sum_probs=22.9
Q ss_pred eEEEEEe-cCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFV-KKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~-~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+||. . | ..-..++..|.+.||+|.++...
T Consensus 1 MkI~IIGG~--------G---~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGT--------G---DQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCC--------C---HHHHHHHHHHHhCCCEEEEEEcC
Confidence 7888884 2 2 22336888999999999887543
No 316
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=47.02 E-value=2e+02 Score=25.33 Aligned_cols=87 Identities=18% Similarity=0.042 Sum_probs=48.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-------------CCCc-----eEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-------------YPIS-----SLYFHLSK 139 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------------~~~~-----~i~~~~~~ 139 (488)
+|+++..+ +.....+....+.+|.+.+++|+++|...+..+... .+.+ .+......
T Consensus 39 riLLviAh------pdDE~mFFsPtI~~L~~~~~~v~iLClSnGN~dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f~ 112 (247)
T KOG3332|consen 39 RILLVIAH------PDDESMFFSPTILYLTSGACNVHILCLSNGNADGLGKIREKELHRACAVLGIPLSNVVVLDTPFFQ 112 (247)
T ss_pred eEEEEEec------cCccccchhhHHHHHhcCCccEEEEEecCCCccccchHHHHHHHHHHHHHCCchhheEEecCCcCC
Confidence 46666642 223345666788888888999999998775443322 1221 11112222
Q ss_pred CCccCcchhHHHHHHHHHHhcCCCCCcEEEeC
Q 011355 140 PTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~ 171 (488)
......|+.......+....... +.|.|++.
T Consensus 113 Dg~~~~Wd~~~v~~~l~~~ie~~-~~~~iiTF 143 (247)
T KOG3332|consen 113 DGPGEDWDPDAVASILLQHIEVL-NIDTIITF 143 (247)
T ss_pred CCcccccCHHHHHHHHHHHHHcc-CccEEEEe
Confidence 22234566666555555555444 78887764
No 317
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=46.93 E-value=47 Score=28.80 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=29.1
Q ss_pred eEEEEEecCCCCCCCC-CcH-HHHHHHHHHHHHHCC-CeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHA-GGL-ERHALTLHLALAKRG-HELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~-gG~-~~~~~~l~~~L~~~G-~~V~v~~~~~~ 121 (488)
|||++|..+. .. ++. .+....+++.+.+.| ++|.++-....
T Consensus 1 mkiLvI~asp----~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~ 44 (199)
T PF02525_consen 1 MKILVINASP----RPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEE 44 (199)
T ss_dssp EEEEEEE--S----STTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred CEEEEEEcCC----CCccCHHHHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 8999998642 22 344 455678889999999 99999877653
No 318
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=46.80 E-value=1.6e+02 Score=29.09 Aligned_cols=94 Identities=7% Similarity=0.016 Sum_probs=51.5
Q ss_pred eEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccccee
Q 011355 329 TVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVI 408 (488)
Q Consensus 329 ~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v 408 (488)
-.+.|+.+...+ .+++.+.+.-...++.+++.+.+..+|++|..+.- +-++.- ..+.-+.|.+.-|.+-.+ ++-
T Consensus 206 ~~I~V~nRt~~r--a~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a--~~~vi~-~~~~~~~~~~~iDLavPR-did 279 (414)
T PRK13940 206 KQIMLANRTIEK--AQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV--LEYIVT-CKYVGDKPRVFIDISIPQ-ALD 279 (414)
T ss_pred CEEEEECCCHHH--HHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC--CCeeEC-HHHhCCCCeEEEEeCCCC-CCC
Confidence 368888875432 22222111000123457889999999999997642 223222 334457898888876544 331
Q ss_pred e---cCCceeEeCCCHHHHHHHHHH
Q 011355 409 V---GTDMGYLFSPQVESVKKALYG 430 (488)
Q Consensus 409 ~---~~~~g~l~~~d~~~la~~i~~ 430 (488)
. +-.+-.++ |.+++.+.+.+
T Consensus 280 p~v~~l~~v~l~--~iDdl~~i~~~ 302 (414)
T PRK13940 280 PKLGELEQNVYY--CVDDINAVIED 302 (414)
T ss_pred ccccCcCCeEEE--eHHHHHHHHHH
Confidence 1 11222334 67777666554
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=46.77 E-value=2.5e+02 Score=26.28 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=32.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
.++++..++. ....|=.+.+..++..+.+.|+.|.++......
T Consensus 32 ~~~~~i~i~G-----~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 32 GNAHRVGITG-----TPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CCceEEEEEC-----CCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3466666663 245677788889999999999999999877544
No 320
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=46.09 E-value=47 Score=29.80 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=29.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||..+.+ .....|-.+.+.+|+.+|+++|+.|.++-.+.
T Consensus 1 m~iI~v~s----~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 1 MKVIAIVG----VKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred CcEEEEEe----CCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 56555554 22344555778999999999999999998875
No 321
>PRK05693 short chain dehydrogenase; Provisional
Probab=45.57 E-value=35 Score=31.27 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=25.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||.++|+. ..||.++ .+++.|.++|++|.+++...
T Consensus 1 mk~vlItG------asggiG~---~la~~l~~~G~~V~~~~r~~ 35 (274)
T PRK05693 1 MPVVLITG------CSSGIGR---ALADAFKAAGYEVWATARKA 35 (274)
T ss_pred CCEEEEec------CCChHHH---HHHHHHHHCCCEEEEEeCCH
Confidence 56677774 5577776 57788889999998887543
No 322
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=45.57 E-value=63 Score=24.96 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=29.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC---CeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRG---HELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G---~~V~v~~~~~~ 121 (488)
||++++..+-|. ..........++......| ++|.|+...+.
T Consensus 1 k~v~~i~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~g 45 (122)
T PF02635_consen 1 KKVFFIVTSGPY---DDERAKIALRLANAAAAMGDYGHDVVVFFHGDG 45 (122)
T ss_dssp EEEEEEE-S-TT---TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGG
T ss_pred CEEEEEecCCCC---CCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchH
Confidence 688888864332 2233677778888888899 99999988763
No 323
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=45.50 E-value=59 Score=31.69 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=23.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++|.. ..-|. +....|++.||+|.++..-+
T Consensus 1 mkiaiigq------s~fg~-----~vy~~lrk~gheiv~vftip 33 (881)
T KOG2452|consen 1 MKIAVIGQ------SLFGQ-----EVYCHLRKEGHEVVGVFTVP 33 (881)
T ss_pred CeeEEech------hhhhH-----HHHHHHHhcCceEEEEEEec
Confidence 89999975 23344 56688999999987665443
No 324
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=45.29 E-value=38 Score=30.58 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=28.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
||||+..+. |=...-+..|+++|++.| +|+|+++......
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 788877652 222335668999999988 9999998765443
No 325
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=45.26 E-value=1.4e+02 Score=27.54 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=26.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||+++|+. -....|. .|++.|-+.||+|+=+....
T Consensus 2 ~K~ALITG----ITGQDGs-----YLa~lLLekGY~VhGi~Rrs 36 (345)
T COG1089 2 GKVALITG----ITGQDGS-----YLAELLLEKGYEVHGIKRRS 36 (345)
T ss_pred CceEEEec----ccCCchH-----HHHHHHHhcCcEEEEEeecc
Confidence 68899985 2233343 58899999999999887653
No 326
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=45.16 E-value=79 Score=22.64 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+++++. ..+........+++.|.++|+.|..+-...
T Consensus 17 ~~v~i~H------G~~eh~~ry~~~a~~L~~~G~~V~~~D~rG 53 (79)
T PF12146_consen 17 AVVVIVH------GFGEHSGRYAHLAEFLAEQGYAVFAYDHRG 53 (79)
T ss_pred EEEEEeC------CcHHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 4555554 235555567799999999999998775543
No 327
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=44.98 E-value=73 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=26.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
...+|++++. ....||- .+-+++.|.+.|++|+|+...+
T Consensus 24 ~~~~v~il~G----~GnNGgD---gl~~AR~L~~~G~~V~v~~~~~ 62 (169)
T PF03853_consen 24 KGPRVLILCG----PGNNGGD---GLVAARHLANRGYNVTVYLVGP 62 (169)
T ss_dssp TT-EEEEEE-----SSHHHHH---HHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCeEEEEEC----CCCChHH---HHHHHHHHHHCCCeEEEEEEec
Confidence 4458999985 2244443 3468999999999999966654
No 328
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=44.85 E-value=2.1e+02 Score=26.38 Aligned_cols=85 Identities=12% Similarity=0.200 Sum_probs=48.9
Q ss_pred hCCcEEEeCc-cCHH---HHHHHHHhcCEEEe--CCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC
Q 011355 346 LGTNVIVLGP-LDQT---RLAMFYNAIDIFVN--PTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP 419 (488)
Q Consensus 346 l~~~V~~~g~-v~~~---~l~~~~~~adv~v~--ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~ 419 (488)
+.++|.+.|. ++.+ ...+.+..||++|. +|..-.....-+..|...|.|+|.-|.+... ..+....+.+..
T Consensus 174 lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~---~~~~~~d~~i~~ 250 (271)
T PTZ00409 174 FKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTY---ITNRISDYHVRA 250 (271)
T ss_pred ccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCC---CCCccccEEEEC
Confidence 4467777774 5653 44567789999655 4443223223334578899999988866543 121223455554
Q ss_pred CHHHHHHHHHHHHhc
Q 011355 420 QVESVKKALYGIWAD 434 (488)
Q Consensus 420 d~~~la~~i~~ll~~ 434 (488)
+.+++.. +.+++..
T Consensus 251 ~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 251 KFSELAQ-ISDILKG 264 (271)
T ss_pred cHHHHHH-HHHHhcc
Confidence 6666664 3355544
No 329
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=44.70 E-value=32 Score=26.64 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=26.7
Q ss_pred HHHHHhcCEEEeCCCCCCCCChHHHH---HHHcCCcEEEeCCCC
Q 011355 362 AMFYNAIDIFVNPTLRAQGLDHTVLE---AMLSGKPLMATRLAS 402 (488)
Q Consensus 362 ~~~~~~adv~v~ps~~~eg~~~~~lE---Ama~G~PVI~~~~~~ 402 (488)
...+..||++|..-.....-+.+.+| |.+.|+||++-....
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~ 99 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDD 99 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCC
Confidence 36789999987643210112447777 788999999875443
No 330
>PRK08105 flavodoxin; Provisional
Probab=44.65 E-value=1.8e+02 Score=23.92 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=30.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||.|+-. +..|-.+..+..+++.|.+.|++|.+.....
T Consensus 3 ~i~I~Yg-----S~tGnte~~A~~l~~~l~~~g~~~~~~~~~~ 40 (149)
T PRK08105 3 KVGIFVG-----TVYGNALLVAEEAEAILTAQGHEVTLFEDPE 40 (149)
T ss_pred eEEEEEE-----cCchHHHHHHHHHHHHHHhCCCceEEechhh
Confidence 4555542 3778899999999999999999999887543
No 331
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=44.38 E-value=1.3e+02 Score=25.44 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHCCCeEEE
Q 011355 95 LERHALTLHLALAKRGHELHI 115 (488)
Q Consensus 95 ~~~~~~~l~~~L~~~G~~V~v 115 (488)
....+.++...+.++||+|.=
T Consensus 42 ~~~~~~~l~~yf~~r~y~v~~ 62 (173)
T PF12046_consen 42 PDEVLEQLKAYFEQRNYRVAE 62 (173)
T ss_pred HHHHHHHHHHHHHhcCceecc
Confidence 356777899999999999863
No 332
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=44.08 E-value=60 Score=28.06 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=27.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHH-HHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERH-ALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~-~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||++|+.+ +..++.... +...++.+.+.|++|+++...
T Consensus 1 mkIl~I~GS----pr~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGS----PRFPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcC----CCCCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 799999863 244555544 444556777789999988765
No 333
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.08 E-value=2.3e+02 Score=28.77 Aligned_cols=114 Identities=12% Similarity=0.085 Sum_probs=66.4
Q ss_pred EEEeCccCHHHHHHHHHhcCE-EEeCCCC----CCCCChHHHHHHHcCC-cEEEeCCCCcc-cceeecCCceeEeCC-CH
Q 011355 350 VIVLGPLDQTRLAMFYNAIDI-FVNPTLR----AQGLDHTVLEAMLSGK-PLMATRLASIV-GSVIVGTDMGYLFSP-QV 421 (488)
Q Consensus 350 V~~~g~v~~~~l~~~~~~adv-~v~ps~~----~eg~~~~~lEAma~G~-PVI~~~~~~~~-~e~v~~~~~g~l~~~-d~ 421 (488)
-.+-|. ++.-.++++.+.+ +++|-.. .++|-.-++||+..|. |||.++.--.+ .+.+.-..+.+.++- ..
T Consensus 401 walcg~--~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~ 478 (907)
T KOG2264|consen 401 WALCGE--RERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARL 478 (907)
T ss_pred hhhccc--hHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCcccc
Confidence 345566 7788899999988 5666321 3566678899999995 88887643332 144544556666664 33
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCC-HHHHHHHHHHHHH
Q 011355 422 ESVKKALYGIWADGREVLEKKGLVARKRGLNLFT-ATKMAAAYERLFL 468 (488)
Q Consensus 422 ~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs-~~~~~~~~~~~~~ 468 (488)
.++ .-+.+.+++ . ..-.|..++|-.-+..++ ....++.....+.
T Consensus 479 tE~-HFllrs~~d-s-Dll~mRRqGRl~wEtYls~~~~~~~tvlA~lR 523 (907)
T KOG2264|consen 479 TEA-HFLLRSFED-S-DLLEMRRQGRLFWETYLSDRHLLARTVLAALR 523 (907)
T ss_pred chH-HHHHHhcch-h-hHHHHHhhhhhhHHHHhhHHHHHHHHHHHHHH
Confidence 333 233344444 3 345666666655444333 3334455555444
No 334
>PRK06924 short chain dehydrogenase; Provisional
Probab=43.98 E-value=40 Score=30.32 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=25.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||.++|+. ..||.++ .+++.|.++|++|.+++...
T Consensus 1 ~k~vlItG------asggiG~---~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 1 MRYVIITG------TSQGLGE---AIANQLLEKGTHVISISRTE 35 (251)
T ss_pred CcEEEEec------CCchHHH---HHHHHHHhcCCEEEEEeCCc
Confidence 56556653 4566665 67999999999998886543
No 335
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=43.91 E-value=2.1e+02 Score=24.52 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR 109 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~ 109 (488)
++.+++++. ..||...-+.+|.++|.+.
T Consensus 37 ~s~~~lVvl-------GSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 37 KSLSTLVVL-------GSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred CcceEEEEE-------cCCCcHHHHHHHHHHHHhh
Confidence 345777776 4688888899999999776
No 336
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=43.59 E-value=1.4e+02 Score=28.00 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC-cEEEeCCCCccc-cee---e--cCCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK-PLMATRLASIVG-SVI---V--GTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~-PVI~~~~~~~~~-e~v---~--~~~~g~l~~~-d~~~la~~i~ 429 (488)
.+++ .-+..||+++.-...-|+|-..+++.+.... ++|.. ..++.- ..- . ......+.+| +...+++.|.
T Consensus 73 p~di-~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~-s~~i~~~~~~~~~~~g~~dpH~Wldp~na~~~v~~I~ 150 (303)
T COG0803 73 PSDI-AKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEV-SDGIELLPLPGEEEEGVNDPHVWLDPKNAKIYAENIA 150 (303)
T ss_pred HHHH-HHHHhCCEEEEcCCChHHHHHHHHHhcccCCceEEEc-cCCccccCCCCccccCCCCCCeecCHHHHHHHHHHHH
Confidence 3444 5667899988765544666666676665543 33332 222210 000 1 1245667777 7777777776
Q ss_pred HHHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Q 011355 430 GIWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 430 ~ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
+-+. .+|+......+|+.++..+ .++..+.+...++.+.
T Consensus 151 ~~L~~~dP~~~~~y~~N~~~y~~k---L~~l~~~~~~~~~~~~ 190 (303)
T COG0803 151 DALVELDPENKETYEKNAEAYLKK---LNKLDEEAKAKLSKIP 190 (303)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCC
Confidence 6555 2377777788888888755 5555555555555443
No 337
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=43.57 E-value=47 Score=34.93 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=28.2
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
+.++||++++++ |.+...| +--....|.++||+|+|++.+.+.
T Consensus 367 ~~~~rvLv~spH-PDDevi~-----~GGTlarl~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 367 PYPKRVIIFSPH-PDDDVIS-----MGGTFRRLVEQGHDVHVAYQTSGN 409 (652)
T ss_pred cCCceEEEEEeC-CCchHhh-----hHHHHHHHHHCCCcEEEEEecCCc
Confidence 345899999974 3322222 222446688899999999887644
No 338
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=43.06 E-value=1.2e+02 Score=34.20 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred CceEEEEEecCCCCCCCCC-cHH--HHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAG-GLE--RHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~g-G~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
.++||+++... |. ..| |.| ..+...+++|++.||+|.++...+..
T Consensus 554 ~~kkvLIlG~G-~~--rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npet 601 (1068)
T PRK12815 554 EKKKVLILGSG-PI--RIGQGIEFDYSSVHAAFALKKEGYETIMINNNPET 601 (1068)
T ss_pred CCceEEEeccc-cc--ccccccccchhHHHHHHHHHHcCCEEEEEeCCccc
Confidence 45789999763 21 222 332 36778899999999999999887643
No 339
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=43.03 E-value=81 Score=28.63 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhc-C
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWAD-G 435 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~-~ 435 (488)
.+++ .-++.||++|.-...-|++--.+.++.......+..-..++. ..-.+...-++.+| +...+++.|.+.+.. +
T Consensus 39 p~d~-~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~npH~Wldp~~~~~~~~~Ia~~L~~~~ 116 (256)
T PF01297_consen 39 PSDI-KKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGID-LDHHGHNPHVWLDPENAKKMAEAIADALSELD 116 (256)
T ss_dssp HHHH-HHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS--GSTTCBESTGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred hHHH-HHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeecccc-cccCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444 556889999986543467655555444444444444444432 10011122356666 777777777666552 3
Q ss_pred HHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 436 REVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
|+......+|+.++..+ .+.+.+++.+.+..
T Consensus 117 P~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~~ 147 (256)
T PF01297_consen 117 PANKDYYEKNAEKYLKE---LDELDAEIKEKLAK 147 (256)
T ss_dssp GGGHHHHHHHHHHHHHH---HHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHH---HHHHHHHHHHHhhc
Confidence 66666666666666543 45555555555443
No 340
>PLN02735 carbamoyl-phosphate synthase
Probab=42.98 E-value=1.2e+02 Score=34.33 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=47.7
Q ss_pred CceEEEEEecCCCCCCCCC-cHH--HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHH
Q 011355 75 KLLKIALFVKKWPHRSHAG-GLE--RHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIV 151 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~g-G~~--~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (488)
.+.||+++..+ |. ..| |++ ..+.+.+++|++.|+++.++...+..........+..++... .
T Consensus 573 ~~kkvlilG~G-~~--~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl------------~ 637 (1102)
T PLN02735 573 NKKKVLILGGG-PN--RIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPL------------T 637 (1102)
T ss_pred CCceEEEeCcc-cc--ccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeC------------C
Confidence 44588888763 11 233 444 456678999999999999998876543322222233333211 1
Q ss_pred HHHHHHHhcCCCCCcEEEeC
Q 011355 152 WQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 152 ~~~~~~~~~~~~~~Dvv~~~ 171 (488)
...+....++. ++|.|+..
T Consensus 638 ~e~vl~i~~~e-~~d~Vi~~ 656 (1102)
T PLN02735 638 VEDVLNVIDLE-RPDGIIVQ 656 (1102)
T ss_pred HHHHHHHHHHh-CCCEEEEC
Confidence 33344444444 89999964
No 341
>CHL00175 minD septum-site determining protein; Validated
Probab=42.78 E-value=60 Score=29.95 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|++.|+. .....|-.+.+.+|+.+|++.|+.|.++-.+.
T Consensus 15 ~~vi~v~s----~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITS----GKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEc----CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46666665 22444556778999999999999999997665
No 342
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=42.70 E-value=61 Score=29.65 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|+|++..- ...|=.+.+.+|+.+|+++|+.|.++-.++.
T Consensus 1 ~~i~v~gK------GGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 1 MVLAVYGK------GGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred CEEEEecC------CCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 67777732 3345556789999999999999999987753
No 343
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.64 E-value=82 Score=23.56 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=26.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+..||++++. ..-+.+..+..+-+.+.++|.++.+.....
T Consensus 2 ~~~~ILl~C~------~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~ 41 (95)
T TIGR00853 2 NETNILLLCA------AGMSTSLLVNKMNKAAEEYGVPVKIAAGSY 41 (95)
T ss_pred CccEEEEECC------CchhHHHHHHHHHHHHHHCCCcEEEEEecH
Confidence 3468999985 112233455666677778899988877664
No 344
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=42.55 E-value=52 Score=29.80 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFT 117 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 117 (488)
-+|++++. ..+.||-.. -+++.|.++|++|.|+.
T Consensus 61 ~~V~VlcG----~GNNGGDGl---v~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCG----PGNNGGDGL---VAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEEC----CCCCchhHH---HHHHHHHHCCCeEEEEE
Confidence 37899986 346666554 47899999999999998
No 345
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=42.38 E-value=59 Score=29.02 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=30.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||++.++. ....|=.+.+..++..|.++|+.|-++-..
T Consensus 1 m~vi~ivG-----~~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIG-----FKDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEEC-----CCCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 77777774 246788888899999999999999999543
No 346
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=42.37 E-value=40 Score=31.70 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=25.5
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|||+++.. |+++.+ ++-.|.+.|++|+++....
T Consensus 2 ~m~I~IiGa--------GaiG~~---~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGA--------GSLGSL---WACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECC--------CHHHHH---HHHHHHhCCCCeEEEEech
Confidence 689999975 555543 5666778899999998753
No 347
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=42.32 E-value=27 Score=32.95 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=28.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+|+.+..-. ...+. .....|+.+.+++||+|.++.+.+
T Consensus 1 m~~~~~~~~~~~-~~~~~--~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIES-INIGK--DTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHH-CCCCc--ChHHHHHHHHHHcCCEEEEEehhh
Confidence 799999863211 12222 244578999999999999999875
No 348
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=42.31 E-value=72 Score=31.66 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=24.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+.||||++.. ||-+. .|+.+|.+.++-..+++...
T Consensus 3 ~~~kvLviG~--------g~reh---al~~~~~~~~~~~~~~~~pg 37 (426)
T PRK13789 3 VKLKVLLIGS--------GGRES---AIAFALRKSNLLSELKVFPG 37 (426)
T ss_pred CCcEEEEECC--------CHHHH---HHHHHHHhCCCCCEEEEECC
Confidence 4599999974 55543 68899988886666666443
No 349
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=42.26 E-value=74 Score=29.71 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=30.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
.+||+.-|+. ...-|=.+.+.+|+-+|++.|+.|.++-.++..
T Consensus 2 ~~~~~iai~~-----KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~ 44 (295)
T PRK13234 2 SKLRQIAFYG-----KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKA 44 (295)
T ss_pred CcceEEEEEC-----CCCccHHHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4677655542 123344556889999999999999999776543
No 350
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=42.09 E-value=53 Score=31.07 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=30.6
Q ss_pred eEEEEEecCCCCCCCCCcHHH--HHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLER--HALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~--~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
|||++++ ..||+++ .+..++-.|++.|..|.+++.++...
T Consensus 2 ~riv~f~-------GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFT-------GKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEe-------cCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 6888888 3577776 67777888999998888888776443
No 351
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=41.99 E-value=53 Score=31.30 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=31.7
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.+|||+++...... ..-=.-......+++|.+.||+|..+....
T Consensus 1 m~~~~i~vl~GG~S~--E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLFGGRSA--EHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEeCCCCC--cchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 357899999865432 222222566789999999999999887665
No 352
>PRK07856 short chain dehydrogenase; Provisional
Probab=41.89 E-value=1.7e+02 Score=26.27 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=24.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||... .+++.|.++|++|.++....
T Consensus 7 k~~lItG------as~gIG~---~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 7 RVVLVTG------GTRGIGA---GIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CEEEEeC------CCchHHH---HHHHHHHHCCCEEEEEeCCh
Confidence 4556653 4566665 67888999999998887654
No 353
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=41.89 E-value=56 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCCcHH--HHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 91 HAGGLE--RHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 91 ~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
..||.+ -.+..|++.|.++|+.+.|++......
T Consensus 65 tvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 99 (338)
T PRK01906 65 TVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAK 99 (338)
T ss_pred cCCCCChHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 445554 468899999999999999999887653
No 354
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=41.80 E-value=2.4e+02 Score=26.62 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=27.2
Q ss_pred EeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEe
Q 011355 352 VLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMAT 398 (488)
Q Consensus 352 ~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~ 398 (488)
..|.++.+.+..+ ..|+||+.+ .++ +.+.+.-.+-+|||+.
T Consensus 249 ~~~~in~~kL~nf--~iD~fV~~a-CPr---~sidd~~~f~kPvlTP 289 (308)
T TIGR03682 249 LLDNISPDQLRNL--DFDAYVNTA-CPR---IAIDDYARFKKPVLTP 289 (308)
T ss_pred EeCCCCHHHHhcC--CcCEEEEcc-CCC---cccccHhhCCCcccCH
Confidence 3455667777766 599999866 333 3456666777777754
No 355
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=41.66 E-value=44 Score=29.94 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
||++|+. ..+|.+. ..++.|.+.|+.|.+.....+
T Consensus 7 kv~lITG------ASSGiG~---A~A~~l~~~G~~vvl~aRR~d 41 (246)
T COG4221 7 KVALITG------ASSGIGE---ATARALAEAGAKVVLAARREE 41 (246)
T ss_pred cEEEEec------CcchHHH---HHHHHHHHCCCeEEEEeccHH
Confidence 7899985 5677765 578999999999999987754
No 356
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.64 E-value=1.7e+02 Score=27.04 Aligned_cols=106 Identities=14% Similarity=0.021 Sum_probs=56.1
Q ss_pred HHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeec-----CCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 361 LAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG-----TDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 361 l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~-----~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
-..-++.||++|.-...-|++--++++....+.++|....+-.......+ ..--++.+| +...+++.|.+.+..
T Consensus 44 d~~~l~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~ 123 (276)
T cd01016 44 DVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEVLSE 123 (276)
T ss_pred HHHHHHhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 33556788888875543355655666665434455544222100000101 134567777 778888888776652
Q ss_pred -CHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 435 -GREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 435 -~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
+|+......+|+..+..+ .+.+-+.+.+.+..
T Consensus 124 ~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~l~~ 156 (276)
T cd01016 124 KLPEHKDEFQANSEAYVEE---LDSLDAYAKKKIAE 156 (276)
T ss_pred HCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 255555566666655543 34444444444443
No 357
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=41.63 E-value=1.9e+02 Score=28.93 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=58.1
Q ss_pred CcEEEeCccCHHHHHHHHHhc--CEEEeCCCCCCCCChHHHHHHHc---CCcEEE-eCCCCccc--ceeecCCceeEeCC
Q 011355 348 TNVIVLGPLDQTRLAMFYNAI--DIFVNPTLRAQGLDHTVLEAMLS---GKPLMA-TRLASIVG--SVIVGTDMGYLFSP 419 (488)
Q Consensus 348 ~~V~~~g~v~~~~l~~~~~~a--dv~v~ps~~~eg~~~~~lEAma~---G~PVI~-~~~~~~~~--e~v~~~~~g~l~~~ 419 (488)
-+|..... -++....+... |+++.=-.-++.-|+.+++.+.. ++|||. |..+.+.. +.+..|-..|+..|
T Consensus 29 ~~v~~a~~--~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP 106 (464)
T COG2204 29 YEVVTAES--AEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKP 106 (464)
T ss_pred CeEEEeCC--HHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCC
Confidence 34544444 55666666655 55555333345567888887766 689986 45555320 34567888899999
Q ss_pred -CHHHHHHHHHHHHhc
Q 011355 420 -QVESVKKALYGIWAD 434 (488)
Q Consensus 420 -d~~~la~~i~~ll~~ 434 (488)
+.+.+...+.+.++.
T Consensus 107 ~~~~~L~~~v~ral~~ 122 (464)
T COG2204 107 FDLDRLLAIVERALEL 122 (464)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 999999999999886
No 358
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=41.48 E-value=2.2e+02 Score=27.41 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=64.3
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEe
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 373 (488)
..|+..|.. +...++|.+.|.+++ -++.+ +. +.++-.++.+.+.+..+..+.+|.
T Consensus 231 vtIia~G~~-----v~~Al~Aa~~L~~~G----I~v~V--Id--------------~~~ikPlD~~~l~~~~~~t~~vvt 285 (356)
T PLN02683 231 VTIVAFSKM-----VGYALKAAEILAKEG----ISAEV--IN--------------LRSIRPLDRDTINASVRKTNRLVT 285 (356)
T ss_pred EEEEEccHH-----HHHHHHHHHHHHhcC----CCEEE--EE--------------CCCCCccCHHHHHHHHhhcCeEEE
Confidence 666666653 556777777776543 33333 32 333445677888888888877654
Q ss_pred CC--CCCCCCChHHHHHHHcC------CcEEEeCCCCcc---cceeecCCceeEeCCCHHHHHHHHHHHHhc
Q 011355 374 PT--LRAQGLDHTVLEAMLSG------KPLMATRLASIV---GSVIVGTDMGYLFSPQVESVKKALYGIWAD 434 (488)
Q Consensus 374 ps--~~~eg~~~~~lEAma~G------~PVI~~~~~~~~---~e~v~~~~~g~l~~~d~~~la~~i~~ll~~ 434 (488)
-- ....|+|-.+.|.++-. .|+.--.....+ ...++ -+.++ +++.+.+++.+++..
T Consensus 286 vEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le----~~~~p-~~~~i~~a~~~~~~~ 352 (356)
T PLN02683 286 VEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLE----RLALP-QVEDIVRAAKRACYR 352 (356)
T ss_pred EeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHH----HhhCC-CHHHHHHHHHHHHHh
Confidence 21 12357888888888654 355433221111 11111 11222 888999999988854
No 359
>PRK08177 short chain dehydrogenase; Provisional
Probab=41.42 E-value=50 Score=29.13 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=25.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||.++|+. ..||... .+++.|.+.|++|.+++...
T Consensus 1 ~k~vlItG------~sg~iG~---~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 1 KRTALIIG------ASRGLGL---GLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred CCEEEEeC------CCchHHH---HHHHHHHhCCCEEEEEeCCC
Confidence 45566664 4566665 57888999999999887664
No 360
>PRK07023 short chain dehydrogenase; Provisional
Probab=41.32 E-value=2.2e+02 Score=25.28 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=20.4
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..||... .+++.|.+.|++|.+++...
T Consensus 9 asggiG~---~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 9 HSRGLGA---ALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred CCcchHH---HHHHHHHhCCCEEEEEecCc
Confidence 3566665 67888999999998887653
No 361
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=41.22 E-value=39 Score=30.10 Aligned_cols=124 Identities=11% Similarity=0.061 Sum_probs=66.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
|+++++.. ++.-..+++.|.+.||+|.++-................+...... .. -..+.
T Consensus 1 m~iiIiG~-----------G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~------t~---~~~L~ 60 (225)
T COG0569 1 MKIIIIGA-----------GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDA------TD---EDVLE 60 (225)
T ss_pred CEEEEECC-----------cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecC------CC---HHHHH
Confidence 67777754 344458999999999999999876543222111111112221111 11 11122
Q ss_pred HHhcCCCCCcEEEeCCc-----chHHhhh---ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHH
Q 011355 157 TQNSTGKPFDVIHTESV-----GLRHTRA---RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEE 228 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~-----~~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (488)
..-.. +.|++++-+. .+...++ .+.|+++...++..+. .....
T Consensus 61 ~agi~--~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~--------------------~~~~~------- 111 (225)
T COG0569 61 EAGID--DADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHE--------------------KVLEK------- 111 (225)
T ss_pred hcCCC--cCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHH--------------------HHHHH-------
Confidence 22122 7999988642 1222222 3568788887763110 11111
Q ss_pred hhhcCCccEEEEcChhhHHHHHHHh
Q 011355 229 VKFFPKYAHHVATSDHCGDVLKRIY 253 (488)
Q Consensus 229 ~~~~~~~d~ii~~S~~~~~~~~~~~ 253 (488)
-.+|.++.+.....+.+.+..
T Consensus 112 ----~g~~~ii~Pe~~~~~~l~~~i 132 (225)
T COG0569 112 ----LGADVIISPEKLAAKRLARLI 132 (225)
T ss_pred ----cCCcEEECHHHHHHHHHHHHh
Confidence 127888999888888888754
No 362
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=41.17 E-value=1.2e+02 Score=32.25 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEE-EEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELH-IFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~-v~~~~ 119 (488)
|||+|+.. ..+.....++|.+.||+|. |+|..
T Consensus 1 mkivf~g~-----------~~~a~~~l~~L~~~~~~i~~V~t~p 33 (660)
T PRK08125 1 MKAVVFAY-----------HDIGCVGIEALLAAGYEIAAVFTHT 33 (660)
T ss_pred CeEEEECC-----------CHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 78888874 2344566788888899988 55543
No 363
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=41.10 E-value=85 Score=28.33 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=50.1
Q ss_pred EEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeC-------CCch---hHHhhhCCcEEEeCc--cCHHHHHHH
Q 011355 297 GMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGD-------GPWG---ARYRDLGTNVIVLGP--LDQTRLAMF 364 (488)
Q Consensus 297 ~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-------g~~~---~~~~~l~~~V~~~g~--v~~~~l~~~ 364 (488)
+|+|-+...-|...+.+.+..|++++ ++.|+|+-. |-.. +++.+.+-.|.=.|. -++.|+.++
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~-----~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~ 75 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEY-----GIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDF 75 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG-------G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHH
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhc-----CCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHH
Confidence 47788888888999999999999876 677888753 2222 344456667777773 357899999
Q ss_pred HHhcCEEEeCCCCCCCCC
Q 011355 365 YNAIDIFVNPTLRAQGLD 382 (488)
Q Consensus 365 ~~~adv~v~ps~~~eg~~ 382 (488)
+...+-+|=|..++++.|
T Consensus 76 i~~~~~ilRPaN~p~~~p 93 (253)
T PF13277_consen 76 IDKEPRILRPANYPPGTP 93 (253)
T ss_dssp HHH-SSEE--TTS-TT-S
T ss_pred HhcCCCcEECCCCCCCCC
Confidence 999998998887655443
No 364
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=41.08 E-value=58 Score=27.90 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||++... . +.....+.++++.|.+.|++|.++....
T Consensus 3 ~Ill~vt------G-siaa~~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 3 NILLAVS------G-SIAAYKAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred EEEEEEe------C-hHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 6666664 1 2233457899999999999999988764
No 365
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=40.96 E-value=55 Score=26.11 Aligned_cols=35 Identities=31% Similarity=0.310 Sum_probs=24.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+|||.||.. ..-|. .|+++|.+.||+|.-+....
T Consensus 9 ~~l~I~iIGa------GrVG~-----~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 9 ARLKIGIIGA------GRVGT-----ALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ---EEEEECT------SCCCC-----HHHHHHHHTTSEEEEESSCH
T ss_pred CccEEEEECC------CHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 5799999986 23333 69999999999998776543
No 366
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=40.63 E-value=1.4e+02 Score=27.27 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=38.9
Q ss_pred hCCcEEEeCc-cCHH---HHHHHHHhcCEEEe--CCCCCCCCChHHHHHHHcCCcEEEeCCCCcc
Q 011355 346 LGTNVIVLGP-LDQT---RLAMFYNAIDIFVN--PTLRAQGLDHTVLEAMLSGKPLMATRLASIV 404 (488)
Q Consensus 346 l~~~V~~~g~-v~~~---~l~~~~~~adv~v~--ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~ 404 (488)
+.++|.+.|. ++.+ ...+.+..||++|. +|+.-.....-+-+|...|.|+|.-|.....
T Consensus 179 lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~ 243 (260)
T cd01409 179 LKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTR 243 (260)
T ss_pred ECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCC
Confidence 4478888885 5543 35667788999655 4543233333445688899999998876543
No 367
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.57 E-value=1.8e+02 Score=29.26 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=47.2
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEEE
Q 011355 90 SHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVIH 169 (488)
Q Consensus 90 ~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~ 169 (488)
+..+|=.+.++.+...+...... ++|..++ .+....++..+.+... ....+...++.+.+. +||||.
T Consensus 266 PTGSGKTTTLY~~L~~ln~~~~n--I~TiEDP-VE~~~~gI~Q~qVN~k-----~gltfa~~LRa~LRq-----DPDvIm 332 (500)
T COG2804 266 PTGSGKTTTLYAALSELNTPERN--IITIEDP-VEYQLPGINQVQVNPK-----IGLTFARALRAILRQ-----DPDVIM 332 (500)
T ss_pred CCCCCHHHHHHHHHHHhcCCCce--EEEeeCC-eeeecCCcceeecccc-----cCCCHHHHHHHHhcc-----CCCeEE
Confidence 35566666666666666554333 5555442 2222344444444332 224444455444433 899999
Q ss_pred eCCc--------chHHhhhccCCcEEEeeeCCcc
Q 011355 170 TESV--------GLRHTRARNLTNVVVSWHGIAY 195 (488)
Q Consensus 170 ~~~~--------~~~~~~~~~~p~~v~~~h~~~~ 195 (488)
+-.. .+.+.+..+ - +..++|....
T Consensus 333 VGEIRD~ETAeiavqAalTGH-L-VlSTlHtnda 364 (500)
T COG2804 333 VGEIRDLETAEIAVQAALTGH-L-VLSTLHTNDA 364 (500)
T ss_pred EeccCCHHHHHHHHHHHhcCC-e-EeeecccCch
Confidence 9642 222222222 2 7788887543
No 368
>PRK09620 hypothetical protein; Provisional
Probab=40.33 E-value=2.4e+02 Score=25.20 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCeEEEEecC
Q 011355 100 LTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 100 ~~l~~~L~~~G~~V~v~~~~ 119 (488)
..++++|.++|++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 47899999999999999764
No 369
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.20 E-value=1.6e+02 Score=29.25 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
...|=.+.+..|+..|.+.|+.|.+++.+.
T Consensus 109 ~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 109 QGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 557777889999999999999999998865
No 370
>CHL00194 ycf39 Ycf39; Provisional
Probab=40.15 E-value=43 Score=31.55 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=24.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++.. .|-.++ .++++|.++||+|.+++...
T Consensus 1 MkIlVtGa-------tG~iG~---~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 1 MSLLVIGA-------TGTLGR---QIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred CEEEEECC-------CcHHHH---HHHHHHHHCCCeEEEEEcCh
Confidence 68887753 233333 68888999999999998653
No 371
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=40.07 E-value=2.7e+02 Score=26.89 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=62.3
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEe
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 373 (488)
+.|+..|.. ....++|.+.|.+++ -++.++ ++.++-.+|.+.+.+.++.++-++.
T Consensus 236 i~Iia~Gs~-----~~~aleAa~~L~~~G----i~v~vI----------------~~~~l~Pld~e~i~~~~~~~~~Ivv 290 (355)
T PTZ00182 236 VTIVGYGSQ-----VHVALKAAEELAKEG----ISCEVI----------------DLRSLRPWDRETIVKSVKKTGRCVI 290 (355)
T ss_pred EEEEEeCHH-----HHHHHHHHHHHHhCC----CcEEEE----------------EEeeCCCCCHHHHHHHHhcCCEEEE
Confidence 666666754 355777777776544 333333 2445556788888898988877655
Q ss_pred C--CCCCCCCChHHHHHHHcC------CcEEEeCCCCcccceeecCCc-eeEeCCCHHHHHHHHHHH
Q 011355 374 P--TLRAQGLDHTVLEAMLSG------KPLMATRLASIVGSVIVGTDM-GYLFSPQVESVKKALYGI 431 (488)
Q Consensus 374 p--s~~~eg~~~~~lEAma~G------~PVI~~~~~~~~~e~v~~~~~-g~l~~~d~~~la~~i~~l 431 (488)
. .....|+|-.+.|.++-. .|+.--.... ..+..... -..+-++.+.+.+++.++
T Consensus 291 vEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d---~~~p~~~~le~~~~~~~~~i~~~~~~~ 354 (355)
T PTZ00182 291 VHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGAD---TPFPYAKNLEPAYLPDKEKVVEAAKRV 354 (355)
T ss_pred EEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCC---ccCCCChHHHHHhCCCHHHHHHHHHHh
Confidence 2 112357888888888664 3665332211 11111110 001112778888877765
No 372
>PRK05993 short chain dehydrogenase; Provisional
Probab=40.07 E-value=52 Score=30.22 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=25.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|.++|+. ..||.+. .+++.|.++|++|.++....
T Consensus 4 ~k~vlItG------asggiG~---~la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 4 KRSILITG------CSSGIGA---YCARALQSDGWRVFATCRKE 38 (277)
T ss_pred CCEEEEeC------CCcHHHH---HHHHHHHHCCCEEEEEECCH
Confidence 45666664 4577765 57888999999998887653
No 373
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=39.99 E-value=2.7e+02 Score=25.84 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=48.4
Q ss_pred hCCcEEEeCc-cCHHH---HHHHHHhcCEEEe--CCCCCCCCCh-H-HHHHHHcCCcEEEeCCCCcccceeecCCceeEe
Q 011355 346 LGTNVIVLGP-LDQTR---LAMFYNAIDIFVN--PTLRAQGLDH-T-VLEAMLSGKPLMATRLASIVGSVIVGTDMGYLF 417 (488)
Q Consensus 346 l~~~V~~~g~-v~~~~---l~~~~~~adv~v~--ps~~~eg~~~-~-~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~ 417 (488)
+.++|.+.|. ++.+. ..+.+..+|++|. .|+ .-.+. . +-.|...|.|+|.-|.+... .+....+.+
T Consensus 189 lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl--~V~p~~~~~~~a~~~g~~~i~IN~~~t~----~~~~~~~~i 262 (285)
T PRK05333 189 LKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSL--MVYSGYRFCVWAAQQGKPIAALNLGRTR----ADPLLTLKV 262 (285)
T ss_pred ccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCc--eecchhhhHHHHHHCCCeEEEECCCCCC----CCcceeEEE
Confidence 4478887774 55443 4567789999665 333 22232 1 23455679999999876533 223335556
Q ss_pred CCCHHHHHHHHHHHH
Q 011355 418 SPQVESVKKALYGIW 432 (488)
Q Consensus 418 ~~d~~~la~~i~~ll 432 (488)
..+..+....|.+.+
T Consensus 263 ~g~~~evL~~l~~~l 277 (285)
T PRK05333 263 EASCAQALAALVARL 277 (285)
T ss_pred eCCHHHHHHHHHHHh
Confidence 556777666665544
No 374
>PRK06101 short chain dehydrogenase; Provisional
Probab=39.76 E-value=52 Score=29.42 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=25.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+.++|+. ..||.+. .+++.|.++|++|.++...
T Consensus 1 ~~~vlItG------as~giG~---~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 1 MTAVLITG------ATSGIGK---QLALDYAKQGWQVIACGRN 34 (240)
T ss_pred CcEEEEEc------CCcHHHH---HHHHHHHhCCCEEEEEECC
Confidence 45566664 4577765 6888899999999887654
No 375
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=39.62 E-value=1.7e+02 Score=27.74 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCcHH--HHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 91 HAGGLE--RHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 91 ~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
..||.+ -.+..|+++|+++|..+.+++....+
T Consensus 56 tvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 56 TVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 344444 57889999999999999999998766
No 376
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=39.60 E-value=1.8e+02 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=25.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
||+++.. +.....+++++.+.|+++.++....+.
T Consensus 4 kvLi~~~-----------geia~~ii~a~~~~Gi~~v~v~~~~d~ 37 (472)
T PRK07178 4 KILIANR-----------GEIAVRIVRACAEMGIRSVAIYSEADR 37 (472)
T ss_pred EEEEECC-----------cHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 6777753 223558999999999999999887544
No 377
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=39.47 E-value=48 Score=32.14 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+|||+++.. .|- .-..+++.|.++||+|+.+...
T Consensus 20 ~~~~IlVtGg-------tGf---IG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGA-------GGF---IASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECC-------ccH---HHHHHHHHHHhCCCEEEEEEec
Confidence 6789887742 232 3347899999999999998764
No 378
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=39.38 E-value=45 Score=26.08 Aligned_cols=44 Identities=16% Similarity=0.028 Sum_probs=29.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
|||+++....-+ ..-=.-..+..++++|.+.+|+|..+.....+
T Consensus 1 m~v~vlfGG~S~--EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g 44 (117)
T PF01820_consen 1 MRVAVLFGGRSS--EHEVSLRSARNVYEALDKEKYEVIPIYIDKDG 44 (117)
T ss_dssp EEEEEEEETSST--THHHHHHHHHHHHHHSHTTTEEEEEEEETTTS
T ss_pred CeEEEEeccCch--hHHHHHHHHHHHHHHHhhhcceEEEEeecCCC
Confidence 899999864311 11111245678889998899999988777544
No 379
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=39.35 E-value=2.6e+02 Score=24.36 Aligned_cols=131 Identities=10% Similarity=-0.049 Sum_probs=65.3
Q ss_pred HHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhC--CcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHH
Q 011355 312 FEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLG--TNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAM 389 (488)
Q Consensus 312 l~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~--~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAm 389 (488)
...+..|.+.+ .+++++... ..+.+.++. ..+.+.... -....+..+|+++..+.. +.....+.+..
T Consensus 23 ~~ka~~Ll~~g------a~V~VIs~~-~~~~l~~l~~~~~i~~~~~~---~~~~~l~~adlViaaT~d-~elN~~i~~~a 91 (202)
T PRK06718 23 GRRAITLLKYG------AHIVVISPE-LTENLVKLVEEGKIRWKQKE---FEPSDIVDAFLVIAATND-PRVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHCC------CeEEEEcCC-CCHHHHHHHhCCCEEEEecC---CChhhcCCceEEEEcCCC-HHHHHHHHHHH
Confidence 34444555533 456666542 223333332 346554321 112446789998876643 34445666666
Q ss_pred HcCCcEEEeCCCCcccc-----eeecCCceeEeCC--CHHHHH----HHHHHHHhcCHHHHHHHHHHHHHHHhhhC
Q 011355 390 LSGKPLMATRLASIVGS-----VIVGTDMGYLFSP--QVESVK----KALYGIWADGREVLEKKGLVARKRGLNLF 454 (488)
Q Consensus 390 a~G~PVI~~~~~~~~~e-----~v~~~~~g~l~~~--d~~~la----~~i~~ll~~~~~~~~~~~~~a~~~~~~~f 454 (488)
..|++|-..+.+... + ++..+.--+-+.. ....++ +.|+.++...-+.+-+.....|+.++++.
T Consensus 92 ~~~~lvn~~d~~~~~-~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~~~~~~~~R~~~k~~~ 166 (202)
T PRK06718 92 PENALFNVITDAESG-NVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESYIDFLYECRQKIKELQ 166 (202)
T ss_pred HhCCcEEECCCCccC-eEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHhC
Confidence 778888887766544 3 3344433333332 233444 44444442212333444455666665543
No 380
>PRK08462 biotin carboxylase; Validated
Probab=39.19 E-value=1.6e+02 Score=29.34 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=19.3
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCC
Q 011355 99 ALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 99 ~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
...+++++++.|++|.++....+.
T Consensus 16 ~~~~~~~~~~~G~~~v~~~~~~d~ 39 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADK 39 (445)
T ss_pred HHHHHHHHHHcCCCEEEEechhhc
Confidence 558999999999999988765533
No 381
>PRK09004 FMN-binding protein MioC; Provisional
Probab=39.00 E-value=70 Score=26.19 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=28.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
||.|+.. +..|-.+..+..+++.+.+.|++|.++..
T Consensus 3 ~i~I~yg-----S~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 3 DITLISG-----STLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred eEEEEEE-----cCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 5666643 37788899999999999999999998643
No 382
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=38.98 E-value=74 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=28.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|+|++... ...|=.+.+.+|+.+|+++|+.|.++-.++.
T Consensus 1 ~~i~~~gK------GGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 1 MILAVYGK------GGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred CEEEEEcC------CcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 67777631 2334446688999999999999999977653
No 383
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=38.87 E-value=2.2e+02 Score=23.64 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=39.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC---CeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG---HELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIV 151 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G---~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (488)
..+||++|.+.|-. -=.........+.|.+.| .++.++... +.+.....
T Consensus 11 ~~~riaIV~s~~n~----~i~~~l~~ga~~~l~~~gv~~~~i~v~~VP------------------------Ga~EiP~a 62 (154)
T PRK00061 11 KGLRIGIVVARFND----FITDALLEGALDALKRHGVSEENIDVVRVP------------------------GAFEIPLA 62 (154)
T ss_pred CCCEEEEEEecCcH----HHHHHHHHHHHHHHHHcCCCccceEEEECC------------------------CHHHHHHH
Confidence 55799999987732 222334445556777777 445555432 55666666
Q ss_pred HHHHHHHhcCCCCCcEEEeC
Q 011355 152 WQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 152 ~~~~~~~~~~~~~~Dvv~~~ 171 (488)
.+.+.... ++|.|++-
T Consensus 63 ~~~l~~~~----~~DavIal 78 (154)
T PRK00061 63 AKKLAESG----KYDAVIAL 78 (154)
T ss_pred HHHHHHcC----CCCEEEEE
Confidence 66655432 79999873
No 384
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=38.72 E-value=1e+02 Score=25.65 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=45.3
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch---hHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCC
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG---ARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPT 375 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~---~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps 375 (488)
=.+...++|+..+.... -+.-+++-|++... ..+++.+..|...|. ...--.++.++||-|+.-.
T Consensus 89 ~Dv~laIDame~~~~~~----iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~-~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPN----IDAVALVTRDADFLPVINKAKENGKETIVIGA-EPGFSTALQNSADIAIILG 156 (160)
T ss_pred ccHHHHHHHHHHhccCC----CCEEEEEeccHhHHHHHHHHHHCCCEEEEEeC-CCCChHHHHHhcCeEEeCC
Confidence 35678899998875544 57777778887655 445556788888884 2234457888999988643
No 385
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=38.67 E-value=54 Score=29.29 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..|+.+. .++++|.++|++|++++..
T Consensus 24 SSG~iG~---aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 24 STGQLGK---IIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred cchHHHH---HHHHHHHhCCCEEEEEECc
Confidence 4455555 6889999999999999754
No 386
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=38.54 E-value=59 Score=29.33 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=25.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+.|||+++. ..|+.++ .+++.|.+.||+|+.++...
T Consensus 16 ~~~~ilItG-------asG~iG~---~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 16 KTKTVFVAG-------ATGRTGK---RIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred cCCeEEEEC-------CCcHHHH---HHHHHHHhCCCEEEEEecCH
Confidence 456777775 3455555 57788888999998887553
No 387
>PRK07454 short chain dehydrogenase; Provisional
Probab=38.46 E-value=59 Score=28.96 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=26.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+||.++|+. ..||... .+++.|.++|++|.++....
T Consensus 4 ~~~k~vlItG------~sg~iG~---~la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 4 NSMPRALITG------ASSGIGK---ATALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CCCCEEEEeC------CCchHHH---HHHHHHHHCCCEEEEEeCCH
Confidence 3567777763 4466655 68888999999998887643
No 388
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.17 E-value=63 Score=30.39 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=26.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+|||+|+.. |- .-..++..|.+.||+|.++....
T Consensus 3 ~~m~I~iiG~--------G~---~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGA--------GA---WGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECc--------cH---HHHHHHHHHHHCCCEEEEEeCCC
Confidence 5689999974 22 23368999999999999887653
No 389
>PRK10867 signal recognition particle protein; Provisional
Probab=38.12 E-value=1.5e+02 Score=29.43 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=30.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCL 121 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~ 121 (488)
++.+++. ....|=.+.+..|+..|.+. |..|.+++.+..
T Consensus 101 ~vI~~vG-----~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG-----LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC-----CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 5555553 25577778899999999998 999999998753
No 390
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=37.86 E-value=69 Score=27.84 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 119 (488)
|||+++..+ ..|-.+..+..+++.+.+ .|.+|.++...
T Consensus 2 ~kilIvy~S-----~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYS-----MYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcC-----CCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 589999752 345567777788888887 89999999865
No 391
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=37.85 E-value=79 Score=30.90 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=30.2
Q ss_pred CceEEEEEecCCCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEec-CC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLE--RHALTLHLALAKRGHELHIFTA-SC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~-~~ 120 (488)
++++|+-|.. ..||++ +.+.+|+.+|+.+|+.|.++-. .+
T Consensus 104 ~~~~vIav~n------~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~Dp 146 (387)
T PHA02519 104 KNPVVLAVMS------HKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDP 146 (387)
T ss_pred CCceEEEEec------CCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4577776665 445555 5688999999999999999975 54
No 392
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=37.85 E-value=1.1e+02 Score=28.48 Aligned_cols=103 Identities=11% Similarity=-0.008 Sum_probs=48.9
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCC--CCCCceEEEecCCCCccCcchhH
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFP--TYPISSLYFHLSKPTAAGYLDQS 149 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 149 (488)
.++|||+++.++ +|. -+..+..+..+. +.+|.++..+..+.... ..+++...+..... ......
T Consensus 91 ~~~~kiavl~Sg-------~g~--nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~---~~~~~~ 158 (289)
T PRK13010 91 GQRPKVVIMVSK-------FDH--CLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPD---TKAQQE 158 (289)
T ss_pred CCCeEEEEEEeC-------CCc--cHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCcc---cccchH
Confidence 367899999862 222 344677776654 35666665554332111 13444444432211 111122
Q ss_pred HHHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
..+....+.. ++|++++..+. ++..+....+.-+.-+|.
T Consensus 159 ~~~~~~l~~~----~~Dlivlagym~il~~~~l~~~~~~iiNiHp 199 (289)
T PRK13010 159 AQILDLIETS----GAELVVLARYMQVLSDDLSRKLSGRAINIHH 199 (289)
T ss_pred HHHHHHHHHh----CCCEEEEehhhhhCCHHHHhhccCCceeeCc
Confidence 2222222222 89999987643 222222222335666665
No 393
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=37.81 E-value=2.3e+02 Score=28.55 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHCCCeEEEEecCC
Q 011355 98 HALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 98 ~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
....+++++++.|+++.+++...
T Consensus 16 ia~~ii~aa~~lG~~~v~~~s~~ 38 (467)
T PRK12833 16 IAVRIIRAARELGMRTVAACSDA 38 (467)
T ss_pred HHHHHHHHHHHcCCeEEEEECCC
Confidence 35588999999999998887643
No 394
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=37.79 E-value=1.5e+02 Score=26.12 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC--chh-------HHhhh-CCcEEEeCccCHHHHHHHHHhcCEEEeCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGP--WGA-------RYRDL-GTNVIVLGPLDQTRLAMFYNAIDIFVNPTL 376 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~--~~~-------~~~~l-~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 376 (488)
+.+.+.+.+..+.+ .+.++.+++... ..+ .++++ +-.+..+...+.++..+.+..||++++|.-
T Consensus 16 ~~~~l~~~l~~~~~------~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG 89 (212)
T cd03146 16 ALPAIDDLLLSLTK------ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGG 89 (212)
T ss_pred chHHHHHHHHHhcc------CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCc
Confidence 44444454444432 345667776532 122 22234 433444433334566788889999888642
Q ss_pred C---------CCCCChHHHHHHHcCCcEEEeCCCC
Q 011355 377 R---------AQGLDHTVLEAMLSGKPLMATRLAS 402 (488)
Q Consensus 377 ~---------~eg~~~~~lEAma~G~PVI~~~~~~ 402 (488)
. .-++.-.+-|+...|+|++.+..|.
T Consensus 90 ~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 90 NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred hHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 0 1133344556667899999886554
No 395
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.78 E-value=1.1e+02 Score=29.97 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=32.6
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
+-.|+++. ...+|=.+.+-.|+++|.++|+.|.+++.+...
T Consensus 100 P~vImmvG------LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 100 PTVILMVG------LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CeEEEEEe------ccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 33455554 367888899999999999999999999987543
No 396
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.74 E-value=1.8e+02 Score=29.13 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=19.1
Q ss_pred HHHHHHHHHHCCCeEEEEecCCC
Q 011355 99 ALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 99 ~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
...+++++.+.|++|.+++...+
T Consensus 14 a~~i~~aa~~~G~~vv~~~~~~d 36 (451)
T PRK08591 14 ALRIIRACKELGIKTVAVHSTAD 36 (451)
T ss_pred HHHHHHHHHHcCCeEEEEcChhh
Confidence 56889999999999999877643
No 397
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.73 E-value=2.9e+02 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=31.5
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+-|++.+++. ...-|-...+.+|+..|+..|..|.++-.+.
T Consensus 530 ~~kvI~vtS~----~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGA----TPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecC----CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3467777752 2446777889999999999999999997654
No 398
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=37.65 E-value=3.2e+02 Score=24.92 Aligned_cols=33 Identities=6% Similarity=0.081 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCC
Q 011355 91 HAGGLERHALTLHLALAKR--GHELHIFTASCLNC 123 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~ 123 (488)
..+-...++.+.+-.|+++ |.+|++++..+...
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a 67 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL 67 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch
Confidence 4555678888999999987 37999999987653
No 399
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=37.58 E-value=1.9e+02 Score=24.87 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=27.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+|++|-. | ..++++|+++|.+.|++|.|+-.+
T Consensus 2 ~~IL~IDN-y---------DSFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 2 MMILLIDN-Y---------DSFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred ceEEEEEC-c---------cchHHHHHHHHHHcCCceEEEECC
Confidence 67888874 3 457899999999999999999876
No 400
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=37.44 E-value=58 Score=27.94 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=22.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++...| -|. .++-.|++.||+|..+-.+.
T Consensus 1 M~I~ViGlGy------vGl-----~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGY------VGL-----PLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--ST------THH-----HHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCc------chH-----HHHHHHHhCCCEEEEEeCCh
Confidence 8999997633 343 68899999999999887654
No 401
>PRK06196 oxidoreductase; Provisional
Probab=37.43 E-value=69 Score=30.14 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=24.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||.+. .+++.|.++|++|.+++..
T Consensus 27 k~vlITG------asggIG~---~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 27 KTAIVTG------GYSGLGL---ETTRALAQAGAHVIVPARR 59 (315)
T ss_pred CEEEEeC------CCchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5566664 4577766 5788899999999887754
No 402
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.36 E-value=84 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=29.0
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+.+|++..+ ..||++. .|++.+.+.|+.|...+..-.
T Consensus 7 ~k~VlItgc------s~GGIG~---ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 7 PKKVLITGC------SSGGIGY---ALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCeEEEeec------CCcchhH---HHHHHHHhCCeEEEEEccccc
Confidence 347788776 6788875 789999999999988776643
No 403
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=37.33 E-value=92 Score=27.18 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
.-+|++++. +.+.||-.. -.++.|...|++|+|+...+..
T Consensus 49 ~~~v~vlcG----~GnNGGDG~---VaAR~L~~~G~~V~v~~~~~~~ 88 (203)
T COG0062 49 ARRVLVLCG----PGNNGGDGL---VAARHLKAAGYAVTVLLLGDPK 88 (203)
T ss_pred CCEEEEEEC----CCCccHHHH---HHHHHHHhCCCceEEEEeCCCC
Confidence 457999996 346666654 4789999999999999987543
No 404
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=37.22 E-value=63 Score=31.08 Aligned_cols=80 Identities=9% Similarity=0.044 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCEEEeC--CCCCCCC-ChHHHHHHHcCC-cEEEeC-CCCcccceeecCCceeEeCC--CHHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNP--TLRAQGL-DHTVLEAMLSGK-PLMATR-LASIVGSVIVGTDMGYLFSP--QVESVKKALYG 430 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~p--s~~~eg~-~~~~lEAma~G~-PVI~~~-~~~~~~e~v~~~~~g~l~~~--d~~~la~~i~~ 430 (488)
.++..++++.....+.. |.. +++ -=++.+|+..|+ ||+-.. .+... +++-. +.-+-++. ++++||+.|..
T Consensus 218 ~~~~~~~~~~ykF~lafENs~c-~dYiTEK~~~al~~g~VPI~~G~~~~~~~-~~~P~-~SfI~~~df~s~~~La~yl~~ 294 (349)
T PF00852_consen 218 RDCKLELLSKYKFYLAFENSNC-PDYITEKFWNALLAGTVPIYWGPPRPNYE-EFAPP-NSFIHVDDFKSPKELADYLKY 294 (349)
T ss_dssp -S-HHHHHHTEEEEEEE-SS---TT---HHHHHHHHTTSEEEEES---TTHH-HHS-G-GGSEEGGGSSSHHHHHHHHHH
T ss_pred cccccccccCcEEEEEecCCCC-CCCCCHHHHHHHHCCeEEEEECCEecccc-cCCCC-CCccchhcCCCHHHHHHHHHH
Confidence 34577788888887653 222 222 347889999997 555442 33333 44433 33344443 79999999999
Q ss_pred HHhcCHHHHHH
Q 011355 431 IWADGREVLEK 441 (488)
Q Consensus 431 ll~~~~~~~~~ 441 (488)
+.+| ++.+.+
T Consensus 295 l~~n-~~~Y~~ 304 (349)
T PF00852_consen 295 LDKN-DELYNK 304 (349)
T ss_dssp HHT--HHHHH-
T ss_pred HhcC-HHHHhh
Confidence 9998 666553
No 405
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=37.21 E-value=1e+02 Score=27.50 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=30.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
|++..+++ .....|=.+.+..|+.+|+++|-.|.+|-.+++.+
T Consensus 1 M~vItf~s----~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 1 MPVITFAS----SKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred CCeEEEec----CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 56555554 22334445678899999999999999998876543
No 406
>PRK06180 short chain dehydrogenase; Provisional
Probab=37.08 E-value=62 Score=29.70 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 4 ~~~vlVtG------asggiG~---~la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 4 MKTWLITG------VSSGFGR---ALAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CCEEEEec------CCChHHH---HHHHHHHhCcCEEEEEeCCH
Confidence 45555553 4577766 57888999999999887643
No 407
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=37.06 E-value=51 Score=23.45 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCCeEEEEecCC
Q 011355 98 HALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 98 ~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
...+++..|++.|.+|+++...+
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45689999999999999999876
No 408
>PRK05568 flavodoxin; Provisional
Probab=37.05 E-value=1.2e+02 Score=24.38 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|++++.. +..|..+..+..+++.+.+.|++|.++....
T Consensus 3 ~~~IvY~-----S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~ 40 (142)
T PRK05568 3 KINIIYW-----SGTGNTEAMANLIAEGAKENGAEVKLLNVSE 40 (142)
T ss_pred eEEEEEE-----CCCchHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4555543 2668888889999999999999999886553
No 409
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=36.97 E-value=2.9e+02 Score=24.22 Aligned_cols=66 Identities=8% Similarity=-0.010 Sum_probs=34.4
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGI 431 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~l 431 (488)
.+++.+++.. .|+++..... ....-..-.+...|+..|.+-.+-.. +-..|..++. +++..++..+
T Consensus 135 ~~~l~~li~~~~iD~ViIa~P~-~~~~~i~~~l~~~Gi~~il~~~p~~~-----~v~~~~~v~~--~~l~~~l~~l 202 (213)
T PRK05472 135 IDELEEVVKENDIEIGILTVPA-EAAQEVADRLVEAGIKGILNFAPVRL-----SVPEDVIVRN--VDLTVELQTL 202 (213)
T ss_pred HHHHHHHHHHCCCCEEEEeCCc-hhHHHHHHHHHHcCCCEEeecCceee-----cCCCCCEEEE--echHHHHHHH
Confidence 4678888876 8886664422 12122344566799766655433321 2234555543 3444444444
No 410
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.91 E-value=3e+02 Score=24.43 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=41.7
Q ss_pred hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEe-CCCCcccceeecCCceeEeCC--CHH
Q 011355 346 LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMAT-RLASIVGSVIVGTDMGYLFSP--QVE 422 (488)
Q Consensus 346 l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~-~~~~~~~e~v~~~~~g~l~~~--d~~ 422 (488)
+.+.+.|...... |++|.... .|. -.+++||.-+++|+|+- |....+ +++ -+-++. |.-
T Consensus 162 ~pd~~~f~~t~~~----------D~vvvln~-~e~-~sAilEA~K~~IPTIgIVDtN~~P-~li-----TYpVPaNDDs~ 223 (251)
T KOG0832|consen 162 LPDALCFLPTLTP----------DLVVVLNP-EEN-HSAILEAAKMAIPTIGIVDTNCNP-ELI-----TYPVPANDDSP 223 (251)
T ss_pred CCcceeecccCCc----------ceeEecCc-ccc-cHHHHHHHHhCCCeEEEecCCCCc-cce-----eeccCCCCCcH
Confidence 4456666666443 88776554 355 46999999999999984 433344 443 244554 444
Q ss_pred HHHHHHHHHHh
Q 011355 423 SVKKALYGIWA 433 (488)
Q Consensus 423 ~la~~i~~ll~ 433 (488)
.-.+.+..++.
T Consensus 224 ~sv~f~~~l~k 234 (251)
T KOG0832|consen 224 ASVEFILNLLK 234 (251)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 411
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=36.88 E-value=1.9e+02 Score=28.96 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=33.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||+++-. ...|-++..+..|.+++.++|+.+.|...+.-
T Consensus 1 ~~i~ILYG-----SqTGtA~dvAe~l~Re~~r~~~~~~V~s~Dey 40 (574)
T KOG1159|consen 1 MKILILYG-----SQTGTAQDVAESLGREAHRRGLQCLVMSMDEY 40 (574)
T ss_pred CceEEEee-----cCcccHHHHHHHHHHHHHhccCCceEeecccc
Confidence 67888863 47888889999999999999999999887653
No 412
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=36.72 E-value=3.9e+02 Score=26.28 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=58.5
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC-chhHHhh-hC--CcEEEeCccCHHHHHHHHH--h
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP-WGARYRD-LG--TNVIVLGPLDQTRLAMFYN--A 367 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~-~~~~~~~-l~--~~V~~~g~v~~~~l~~~~~--~ 367 (488)
.+++.+++.+...-. ...+..+.+++ |++++++.-..+ ..+..++ .. ..+.+.+.-....+..+++ +
T Consensus 52 ~iW~Ha~s~Ge~~~~---~~l~~~l~~~~----~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~ 124 (425)
T PRK05749 52 LIWFHAVSVGETRAA---IPLIRALRKRY----PDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWR 124 (425)
T ss_pred eEEEEeCCHHHHHHH---HHHHHHHHHhC----CCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhC
Confidence 677888888755544 44445556666 777765553222 2222222 23 2344555433556777776 4
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeC
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATR 399 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~ 399 (488)
-|+++.-. .|-++..+..+-..|+|++..+
T Consensus 125 Pd~v~~~~--~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 125 PKLVIIME--TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred CCEEEEEe--cchhHHHHHHHHHCCCCEEEEe
Confidence 58876643 3566777778888999998864
No 413
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=36.54 E-value=1.9e+02 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHCCCeEEEEecCC
Q 011355 98 HALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 98 ~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
....+++++++.|++|.++....
T Consensus 13 ~~~~~~~aa~~lG~~vv~~~~~~ 35 (449)
T TIGR00514 13 IALRILRACKELGIKTVAVHSTA 35 (449)
T ss_pred HHHHHHHHHHHcCCeEEEEEChh
Confidence 35689999999999999997753
No 414
>COG3911 Predicted ATPase [General function prediction only]
Probab=36.39 E-value=67 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=25.1
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFT 117 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 117 (488)
++.+||+.|++. .+|+..+ .|..+|+++|+-+..-.
T Consensus 5 ~~nR~~~fIltG------gpGaGKT---tLL~aLa~~Gfatvee~ 40 (183)
T COG3911 5 PFNRHKRFILTG------GPGAGKT---TLLAALARAGFATVEEA 40 (183)
T ss_pred ccccceEEEEeC------CCCCcHH---HHHHHHHHcCceeeccc
Confidence 457889999985 3344433 57899999998665443
No 415
>PRK06444 prephenate dehydrogenase; Provisional
Probab=36.00 E-value=62 Score=28.12 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=21.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEE
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELH 114 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~ 114 (488)
|||++|. ..|+.++ .+++.|.+.||+|.
T Consensus 1 ~~~~iiG-------~~G~mG~---~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIG-------KNGRLGR---VLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEe-------cCCcHHH---HHHHHHHhCCCEEE
Confidence 7889987 3577776 47788888999986
No 416
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=35.97 E-value=1.9e+02 Score=30.63 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=49.9
Q ss_pred EEeCccCHHHHHHHHHhcCEEEeCCC-CCCCCChHHHHHHHcC------CcEEEeCCCCcccceeecCCceeEeCC---C
Q 011355 351 IVLGPLDQTRLAMFYNAIDIFVNPTL-RAQGLDHTVLEAMLSG------KPLMATRLASIVGSVIVGTDMGYLFSP---Q 420 (488)
Q Consensus 351 ~~~g~v~~~~l~~~~~~adv~v~ps~-~~eg~~~~~lEAma~G------~PVI~~~~~~~~~e~v~~~~~g~l~~~---d 420 (488)
.++-.++.+-+.+..+..+.+|.--- ...|||-.+.|.++-. +||..- |++++.+.++....+.+. |
T Consensus 602 r~ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~i---Gipd~F~~~G~~~~ll~~~GLd 678 (701)
T PLN02225 602 RFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPI---VLPDGYIEEASPREQLALAGLT 678 (701)
T ss_pred CCCCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEE---ecCCcCcCCCCHHHHHHHhCcC
Confidence 34456778888899888888665211 1258899999988765 354322 333344555544333332 7
Q ss_pred HHHHHHHHHHHHh
Q 011355 421 VESVKKALYGIWA 433 (488)
Q Consensus 421 ~~~la~~i~~ll~ 433 (488)
++.+++.+.+++.
T Consensus 679 ae~I~~~i~~~l~ 691 (701)
T PLN02225 679 GHHIAATALSLLG 691 (701)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888777764
No 417
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=35.79 E-value=1.3e+02 Score=26.40 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=37.6
Q ss_pred hCCcEEEeCc-cCHH---HHHHHHHhcCEEEe--CCCCCCCCChHHHHHHHcCCcEEEeCCCCc
Q 011355 346 LGTNVIVLGP-LDQT---RLAMFYNAIDIFVN--PTLRAQGLDHTVLEAMLSGKPLMATRLASI 403 (488)
Q Consensus 346 l~~~V~~~g~-v~~~---~l~~~~~~adv~v~--ps~~~eg~~~~~lEAma~G~PVI~~~~~~~ 403 (488)
+.++|.+.|. ++.+ +..+....||++|. +|..-.....-+-+|...|.|+|.-|....
T Consensus 130 lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~ 193 (206)
T cd01410 130 LKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPT 193 (206)
T ss_pred cCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCC
Confidence 5578888885 4543 55677788999655 444223333334567889999998776543
No 418
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=35.77 E-value=3e+02 Score=24.11 Aligned_cols=96 Identities=28% Similarity=0.364 Sum_probs=53.3
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc---hhHHhh---hCC--cEEEeCccCHHHHHHHH
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW---GARYRD---LGT--NVIVLGPLDQTRLAMFY 365 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~---~~~~~~---l~~--~V~~~g~v~~~~l~~~~ 365 (488)
.+++++|. .+.|=|-+ =+...|...+ -++.+...|+... +..... +.. .+... +.....
T Consensus 51 ~v~vlcG~--GnNGGDG~-VaAR~L~~~G----~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~------~~~~~~ 117 (203)
T COG0062 51 RVLVLCGP--GNNGGDGL-VAARHLKAAG----YAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIK------ELEDEP 117 (203)
T ss_pred EEEEEECC--CCccHHHH-HHHHHHHhCC----CceEEEEeCCCCCccHHHHHHHHHhhcCCcceeec------cccccc
Confidence 45666774 34444444 4556676666 5888888886442 221111 221 22222 222266
Q ss_pred HhcCEEEeCCCCCCCCC-------hHHHHHHH-cCCcEEEeCCCCc
Q 011355 366 NAIDIFVNPTLRAQGLD-------HTVLEAML-SGKPLMATRLASI 403 (488)
Q Consensus 366 ~~adv~v~ps~~~eg~~-------~~~lEAma-~G~PVI~~~~~~~ 403 (488)
..+|++|-.-. +-|+. -.++|.+- .|+|||+-|+++-
T Consensus 118 ~~~dvIVDalf-G~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPSG 162 (203)
T COG0062 118 ESADVIVDALF-GTGLSGPLREPFASLIEAINASGKPIVAVDIPSG 162 (203)
T ss_pred ccCCEEEEece-ecCCCCCCccHHHHHHHHHHhcCCceEEEeCCCC
Confidence 78899876332 22221 35566665 9999999998864
No 419
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=35.69 E-value=86 Score=26.28 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=30.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..|||.+... ...|=.+.+..+++.|.+.|+.|-=+...
T Consensus 4 ~~mki~ITG~------PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFITGR------PGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred cceEEEEeCC------CCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 4688877764 45677889999999999999998755544
No 420
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=35.69 E-value=53 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=23.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
|||+++.. |++.. .++..|.+.||+|.+++.
T Consensus 1 mkI~IiG~--------G~iG~---~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVGG---TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHHH---HHHHHHHHCCCceEEEec
Confidence 78999964 33332 577888889999999987
No 421
>PRK03094 hypothetical protein; Provisional
Probab=35.29 E-value=23 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEec
Q 011355 95 LERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 95 ~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
++.-+.++.++|+++||+|.=+..
T Consensus 6 VE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 6 VEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred eecCcHHHHHHHHHCCCEEEecCc
Confidence 344456899999999999986643
No 422
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=35.25 E-value=2.7e+02 Score=26.40 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
...|=.+.+..|+..+...|..|.+++.+.
T Consensus 123 nGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 123 NGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 557778889999999999999999998764
No 423
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=34.86 E-value=76 Score=30.93 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=31.3
Q ss_pred EEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 79 IALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 79 Il~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++++.+ +...|..+.+++.++..+++.|+.|.|+....
T Consensus 127 ~vvilp----Gltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 127 IVVILP----GLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred EEEEec----CCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 455555 45778888999999999999999999997764
No 424
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=34.86 E-value=2.7e+02 Score=23.21 Aligned_cols=65 Identities=20% Similarity=0.370 Sum_probs=37.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC---eEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH---ELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIV 151 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~---~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (488)
..+||++|...|-. -=.......-.+.|.+.|. ++.++... +.+.....
T Consensus 9 ~~~riaIV~srfn~----~It~~Ll~gA~~~l~~~G~~~~~i~v~~VP------------------------GA~EiP~~ 60 (158)
T PRK12419 9 TPQRIAFIQARWHA----DIVDQARKGFVAEIAARGGAASQVDIFDVP------------------------GAFEIPLH 60 (158)
T ss_pred CCCEEEEEEecCCH----HHHHHHHHHHHHHHHHcCCCccceEEEECC------------------------cHHHHHHH
Confidence 55799999987632 2223333344456666673 34443222 55666666
Q ss_pred HHHHHHHhcCCCCCcEEEeC
Q 011355 152 WQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 152 ~~~~~~~~~~~~~~Dvv~~~ 171 (488)
.+.+... . +||-|++-
T Consensus 61 a~~l~~~---~-~yDaiIaL 76 (158)
T PRK12419 61 AQTLAKT---G-RYAAIVAA 76 (158)
T ss_pred HHHHHhc---C-CCCEEEEE
Confidence 6555432 2 79999873
No 425
>PRK09273 hypothetical protein; Provisional
Probab=34.85 E-value=83 Score=27.48 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=28.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++... +...=-+.....+.+.|.+.||+|.=+...
T Consensus 1 mkiali~e~----sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~ 39 (211)
T PRK09273 1 MKIALINEN----SQAAKNAIIYEALKKVADPKGHEVFNYGMY 39 (211)
T ss_pred CeEEeeccc----chhhhhHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 899999852 233344556778889999999999777654
No 426
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=34.68 E-value=62 Score=25.66 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=37.7
Q ss_pred HHHHHHhcCEEEeCCCCCCCC-----ChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHH
Q 011355 361 LAMFYNAIDIFVNPTLRAQGL-----DHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIW 432 (488)
Q Consensus 361 l~~~~~~adv~v~ps~~~eg~-----~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll 432 (488)
-..++..||++|.-- +|-+ .+-.-=|.|.|+|.|.-.-+... .-+.+-...-.+-. +++...+.+..++
T Consensus 66 T~~li~~aDvVVvrF--GekYKQWNaAfDAg~a~AlgKplI~lh~~~~~-HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 66 TRTLIEKADVVVVRF--GEKYKQWNAAFDAGYAAALGKPLITLHPEELH-HPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHhhCCEEEEEe--chHHHHHHHHhhHHHHHHcCCCeEEecchhcc-ccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 456789999988732 2322 11223378999999987755543 22222222111111 6666666665543
No 427
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=34.56 E-value=68 Score=29.12 Aligned_cols=39 Identities=28% Similarity=0.202 Sum_probs=26.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
|||++..+.-. ..-| +..|+++|++ +++|+|+++..+..
T Consensus 1 M~ILvtNDDGi---~apG----l~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI---NAEG----INTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC---CChh----HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 78888876311 1122 5678888876 57999999876544
No 428
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=34.56 E-value=70 Score=32.07 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=27.5
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||++++. ..+.||-.. -+++.|...|++|.|+....
T Consensus 61 ~VlVlcG----~GNNGGDGl---v~AR~L~~~G~~V~v~~~~~ 96 (462)
T PLN03049 61 RVLALCG----PGNNGGDGL---VAARHLHHFGYKPSICYPKR 96 (462)
T ss_pred EEEEEEC----CCCCHHHHH---HHHHHHHHCCCceEEEEECC
Confidence 7999986 336666554 47888999999999998754
No 429
>PRK07074 short chain dehydrogenase; Provisional
Probab=34.43 E-value=55 Score=29.51 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..||... .+++.|.++|++|.++...
T Consensus 10 at~~iG~---~la~~L~~~g~~v~~~~r~ 35 (257)
T PRK07074 10 AAGGIGQ---ALARRFLAAGDRVLALDID 35 (257)
T ss_pred CcchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 3456554 6788899999999888754
No 430
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=34.38 E-value=1.4e+02 Score=26.43 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=22.1
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeC
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGD 336 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~ 336 (488)
-|++.++.++++++.+. +++-++++|.
T Consensus 156 AGiHRLl~~l~r~~~~~----~~~lIVvAGM 182 (254)
T COG1691 156 AGIHRLLSALKRLKIED----ADVLIVVAGM 182 (254)
T ss_pred chHHhhhhHHHHHHhhC----CCeEEEEccc
Confidence 47888999998888877 7888888884
No 431
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=34.23 E-value=84 Score=26.89 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 96 ERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 96 ~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.....++++.|.+.|++|.++....
T Consensus 12 a~ka~~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 12 VIYGIRLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcc
Confidence 4567899999999999999998764
No 432
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=34.23 E-value=59 Score=26.96 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCeEEEEecCC
Q 011355 99 ALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 99 ~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
-..++..|+++||+|.+++...
T Consensus 11 G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 11 GTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHHcCCEEEEEeccH
Confidence 3478999999999999998763
No 433
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=34.20 E-value=88 Score=26.66 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Q 011355 97 RHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 97 ~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.....+++.|.+.|++|.++.+..
T Consensus 14 ~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 14 YKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChH
Confidence 456699999999999999998764
No 434
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.20 E-value=1.6e+02 Score=25.76 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=40.5
Q ss_pred HHHHHHHhHhhccCCCCCeEEEEEeCCC--chhHHh---hhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHH
Q 011355 311 MFEALKQLLAENDTFRRSTVFLVAGDGP--WGARYR---DLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTV 385 (488)
Q Consensus 311 ll~a~~~l~~~~~~~~~~~~l~ivG~g~--~~~~~~---~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~ 385 (488)
.+++++++.+++ |+ +++|.|. ..+..+ +.+.+..+.+.+ ..++.++-.+.++...|.- ..|.-+
T Consensus 42 a~~~I~~l~~~~----~~---~~vGAGTVl~~e~a~~ai~aGA~FivSP~~-~~~vi~~a~~~~i~~iPG~---~TptEi 110 (201)
T PRK06015 42 ALDAIRAVAAEV----EE---AIVGAGTILNAKQFEDAAKAGSRFIVSPGT-TQELLAAANDSDVPLLPGA---ATPSEV 110 (201)
T ss_pred HHHHHHHHHHHC----CC---CEEeeEeCcCHHHHHHHHHcCCCEEECCCC-CHHHHHHHHHcCCCEeCCC---CCHHHH
Confidence 455666666665 54 4455543 122222 234455555443 3566666667777666653 235566
Q ss_pred HHHHHcCCcEE
Q 011355 386 LEAMLSGKPLM 396 (488)
Q Consensus 386 lEAma~G~PVI 396 (488)
.+|+.+|..+|
T Consensus 111 ~~A~~~Ga~~v 121 (201)
T PRK06015 111 MALREEGYTVL 121 (201)
T ss_pred HHHHHCCCCEE
Confidence 66777776555
No 435
>PRK07236 hypothetical protein; Provisional
Probab=34.14 E-value=40 Score=32.88 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=27.3
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+.+++|+||.. ..+|. .++..|++.|++|+|+-...
T Consensus 4 ~~~~~ViIVGa------G~aGl-----~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGG------SLGGL-----FAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECC------CHHHH-----HHHHHHHhCCCCEEEEecCC
Confidence 45689999974 33443 68889999999999998653
No 436
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=34.14 E-value=63 Score=30.63 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=23.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
|||+++. ..|+... .+++.|.++|++|.++..
T Consensus 1 m~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTG-------GSGYIGS---HTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEEC-------CCChHHH---HHHHHHHHCCCeEEEEec
Confidence 6777665 2355554 678889999999998854
No 437
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=34.09 E-value=74 Score=28.52 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=24.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+|+++. ..||.+. .+++.|.++|++|.+++...
T Consensus 1 ~~vlItG-------asg~iG~---~la~~l~~~G~~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTG-------ATAGFGE---CITRRFIQQGHKVIATGRRQ 34 (248)
T ss_pred CEEEEEC-------CCchHHH---HHHHHHHHCCCEEEEEECCH
Confidence 5665554 3466655 57888999999998887653
No 438
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=34.09 E-value=77 Score=30.36 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=29.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+|||+++...... ..-=.-......+++|.+.||+|..+....
T Consensus 2 ~~~~i~vl~GG~S~--E~evSl~s~~~v~~~l~~~~~~v~~i~i~~ 45 (343)
T PRK14568 2 NRIKVGILFGGCSE--EHPVSVKSAIEVARNLDTEKYEPFYIGITK 45 (343)
T ss_pred CCcEEEEEECCCCC--chHHHHHhHHHHHHhhcccCCeEEEEEECC
Confidence 47899999864321 111112455678899999999999887654
No 439
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=34.04 E-value=1.7e+02 Score=29.22 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
.|||+++.. ||-+ ..++.+|++.|++|.++..
T Consensus 2 ~~kVLvlG~--------G~re---~al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGS--------GGRE---DAIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECC--------cHHH---HHHHHHHHhCCCeEEEEEC
Confidence 589999864 4433 3678888888987777743
No 440
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=33.86 E-value=73 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHHHHHC--CCeEEEEecCC
Q 011355 93 GGLERHALTLHLALAKR--GHELHIFTASC 120 (488)
Q Consensus 93 gG~~~~~~~l~~~L~~~--G~~V~v~~~~~ 120 (488)
|+.-..+.++++.|.+. |++|.++.+..
T Consensus 10 ~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 10 GHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred cHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 44546888999999999 99999998765
No 441
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=33.66 E-value=2.9e+02 Score=23.25 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=51.2
Q ss_pred CCeEEEEEeCCCc-hh----HHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCC
Q 011355 327 RSTVFLVAGDGPW-GA----RYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLA 401 (488)
Q Consensus 327 ~~~~l~ivG~g~~-~~----~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~ 401 (488)
.+-+++|+|.|.. .. .+.+.+.+|.+...- .+++.+.+..||++|..+..++ +.--|.+.-| .+.-|.+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~aDiVIsat~~~~---ii~~~~~~~~--~viIDla 116 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQADIVIVAVGKPG---LVKGDMVKPG--AVVIDVG 116 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC-chhHHHHHhhCCEEEEcCCCCc---eecHHHccCC--eEEEEcc
Confidence 5678999998864 32 333333456666652 4689999999999998764322 2333433333 4445554
Q ss_pred CcccceeecCCceeEeCC-CHHHHHHH
Q 011355 402 SIVGSVIVGTDMGYLFSP-QVESVKKA 427 (488)
Q Consensus 402 ~~~~e~v~~~~~g~l~~~-d~~~la~~ 427 (488)
-.+ + ++ ..+|-++-. |.+...+.
T Consensus 117 ~pr-d-vd-~~~~~~~G~~d~~~~~~~ 140 (168)
T cd01080 117 INR-V-PD-KSGGKLVGDVDFESAKEK 140 (168)
T ss_pred CCC-c-cc-ccCCCeeCCcCHHHHHhh
Confidence 433 1 22 333344443 55544433
No 442
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=33.59 E-value=1.2e+02 Score=22.04 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=25.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHH-HHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHA-LTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~-~~l~~~L~~~G~~V~v~~~~ 119 (488)
||++++. ..-|.+..+ ..+-+.+.++|.++.+....
T Consensus 1 kIlvvC~------~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCG------SGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEES------SSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECC------ChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 6888885 233555555 67778888999888877665
No 443
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=33.51 E-value=50 Score=37.41 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCCCCCCCc------HHHHHHHHHHHHHHCCCeEE
Q 011355 75 KLLKIALFVKKWPHRSHAGG------LERHALTLHLALAKRGHELH 114 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~ 114 (488)
...||++|..+|||+...-| +...+.++.+.|++.||+|.
T Consensus 415 ~eKkvAIil~nyPpg~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 460 (1216)
T TIGR02025 415 AEKKVAIVLFNFPPGLGNVGTAAYLDVFESLYELLHRLKDEGYNVG 460 (1216)
T ss_pred hhCEEEEEecCCCCCCCcccccccCChHHHHHHHHHHHHHCCCCCC
Confidence 44599999999998654433 23568899999999999994
No 444
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.45 E-value=35 Score=22.65 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=14.1
Q ss_pred hHHHHHHHcCCcEEEe
Q 011355 383 HTVLEAMLSGKPLMAT 398 (488)
Q Consensus 383 ~~~lEAma~G~PVI~~ 398 (488)
-.+.|++..|.||++-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4799999999999974
No 445
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.43 E-value=4.1e+02 Score=24.89 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=55.0
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh----hCCcEEEeCccCHHHHHHHHHh-c
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD----LGTNVIVLGPLDQTRLAMFYNA-I 368 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~----l~~~V~~~g~v~~~~l~~~~~~-a 368 (488)
-+|+..-.+.-....+..-..|..| .++ ++..+...++.+.. ..+.|-|.-.+.+-.+..++.. +
T Consensus 22 ~~IGiPRvLn~ye~yPff~tffteL---------Gf~-VVlS~~S~kely~~G~~ti~sevCfPaki~HGHi~~L~~K~~ 91 (351)
T COG3580 22 GTIGIPRVLNMYEYYPFFHTFFTEL---------GFR-VVLSPKSSKELYEKGIETIPSEVCFPAKISHGHIMDLIKKGI 91 (351)
T ss_pred ceecchHHHHHhhccHHHHHHHHHc---------Cce-EEeCCCCcHHHHHhhhhhCCccceeceeechhHHHHHHHcCC
Confidence 3555444444455555555555554 456 33343344444433 3344777777888889999997 9
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEEe
Q 011355 369 DIFVNPTLRAQGLDHTVLEAMLSGKPLMAT 398 (488)
Q Consensus 369 dv~v~ps~~~eg~~~~~lEAma~G~PVI~~ 398 (488)
|....|+.+.+- +-- -+--..-||+|++
T Consensus 92 d~IFyP~l~~~~-~E~-~a~n~~~CP~V~~ 119 (351)
T COG3580 92 DYIFYPCLRYIK-SEQ-SANNHYNCPIVQS 119 (351)
T ss_pred CeEEeccccccc-ccc-cccccccCccccC
Confidence 999999875332 211 2233456888876
No 446
>PRK06753 hypothetical protein; Provisional
Probab=33.35 E-value=39 Score=32.68 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=25.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+|+.. ..+|. .++..|++.|++|+|+-...
T Consensus 1 ~~V~IvGg------G~aGl-----~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGA------GIGGL-----TAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred CEEEEECC------CHHHH-----HHHHHHHhCCCcEEEEecCC
Confidence 68888864 33443 57888999999999987664
No 447
>PRK13768 GTPase; Provisional
Probab=33.26 E-value=1.1e+02 Score=27.69 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=30.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|++.++.. ....|=.+.+.+++.+|..+|+.|.++...+.
T Consensus 2 ~~~i~v~G-----~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLG-----TAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEEC-----CCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 45566653 24566677889999999999999999987653
No 448
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=33.23 E-value=2.7e+02 Score=28.95 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.++|||+++|. ...|-.......+-+.|+++|.++.+...+-
T Consensus 504 ~k~mKILvaCG-----sGiGTStmva~kIkk~Lke~GI~veV~~~~V 545 (602)
T PRK09548 504 GKPVRILAVCG-----QGQGSSMMMKMKIKKYLDKRGIPIIMDSCAV 545 (602)
T ss_pred CcccEEEEECC-----CCchHHHHHHHHHHHHHHHcCCCeEEEEech
Confidence 47799999995 2344444455666777889999987665543
No 449
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=33.23 E-value=1.4e+02 Score=28.26 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=32.4
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+.+++|+.-|.. .....|..+.+.+|+.+|+++|.+|.++-.+..
T Consensus 89 ~~~~~~vIav~~----~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~ 133 (322)
T TIGR03815 89 PPARGVVVAVIG----GRGGAGASTLAAALALAAARHGLRTLLVDADPW 133 (322)
T ss_pred CCCCceEEEEEc----CCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 345677766664 234455666789999999999999999876643
No 450
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=33.22 E-value=73 Score=29.13 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=26.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
|||++..+. |=...-+..|+++|.+.| +|+|+++.....
T Consensus 1 M~ILlTNDD-------Gi~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDD-------GVHSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCC-------CCCCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 788888752 111233567889998887 899999876544
No 451
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=33.18 E-value=1e+02 Score=28.02 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 92 AGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 92 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
..|=.+.+.+|+.+|+++|+.|.++-.++..
T Consensus 11 GvGKTT~~~nLA~~La~~G~kVlliD~Dpq~ 41 (270)
T cd02040 11 GIGKSTTTQNLSAALAEMGKKVMIVGCDPKA 41 (270)
T ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 3455567889999999999999999887643
No 452
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=33.05 E-value=1.1e+02 Score=26.70 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=32.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||+.|+..+ . ..|-....+...++.+.+.|.||.++.....
T Consensus 1 mki~~I~gs~--r-~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~ 42 (207)
T COG0655 1 MKILGINGSP--R-SNGNTAKLAEAVLEGAEEAGAEVEIIRLPEK 42 (207)
T ss_pred CeeeEEEecC--C-CCCcHHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 6777777543 1 2677777888888999999999999998764
No 453
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=32.95 E-value=1.3e+02 Score=28.54 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=31.5
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
.+++++ +...|+.+.++..|++++.++|++|+|+....-..
T Consensus 77 ~vVl~H-----GL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~ 117 (345)
T COG0429 77 LVVLFH-----GLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSG 117 (345)
T ss_pred eEEEEe-----ccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccC
Confidence 455555 34667777899999999999999999998765433
No 454
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=32.94 E-value=51 Score=37.74 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCceEEEEEecCCCCCCCCCc------HHHHHHHHHHHHHHCCCeE
Q 011355 74 LKLLKIALFVKKWPHRSHAGG------LERHALTLHLALAKRGHEL 113 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V 113 (488)
....||++|..+|||....-| +...+.++.+.|++.||+|
T Consensus 429 n~eKkVAIil~nyPpg~g~iG~Aa~LDv~~Sl~~iL~~Lk~~GY~v 474 (1310)
T PRK12493 429 RAEKKLAITLFSFPPDKGNVGTAAYLDVFGSIYRLLQELKAAGYDV 474 (1310)
T ss_pred hhhCEEEEEecCCCCCCCcccccccCChHHHHHHHHHHHHHCCCCC
Confidence 344599999999998654434 2356889999999999999
No 455
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=32.85 E-value=61 Score=30.31 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=26.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++++..- . ......+.+++.++||+|.++....
T Consensus 1 m~~~i~~~~~----s----~~s~~~~~~a~~~~g~~v~~i~~~~ 36 (300)
T PRK10446 1 MKIAILSRDG----T----LYSCKRLREAAIQRGHLVEILDPLS 36 (300)
T ss_pred CeEEEEecCC----c----chhHHHHHHHHHHcCCeEEEEehHH
Confidence 7899988521 1 1233478999999999999997653
No 456
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=32.81 E-value=2.6e+02 Score=25.12 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=36.4
Q ss_pred hCCcEEEeCccCHHHHHHHHHhcCEEEeCCC---------CCCCCChHHHHHHHcCCcEEEeCCCC
Q 011355 346 LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTL---------RAQGLDHTVLEAMLSGKPLMATRLAS 402 (488)
Q Consensus 346 l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~---------~~eg~~~~~lEAma~G~PVI~~~~~~ 402 (488)
++-.|..+.. .++..+.+..||++..+.- +..++--.+-|+...|+|++.+..|.
T Consensus 60 lG~~v~~l~~--~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 60 LGIEVTGIHR--VADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred CCCEEEEecc--chhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 4444554443 3466788999998777531 11244455678999999999987665
No 457
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=32.75 E-value=3.7e+02 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=25.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+++|+. ..||... .+++.|.++|++|.++....
T Consensus 10 k~vlItG------~s~gIG~---~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 10 KIIIVTG------GSSGIGL---AIVKELLANGANVVNADIHG 43 (266)
T ss_pred CEEEEeC------CCChHHH---HHHHHHHHCCCEEEEEeCCc
Confidence 5666664 4577765 67889999999999887654
No 458
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=32.72 E-value=51 Score=36.93 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=32.5
Q ss_pred CCCCceEEEEEecCCCCCCCCCc------HHHHHHHHHHHHHHCCCeEE
Q 011355 72 PPLKLLKIALFVKKWPHRSHAGG------LERHALTLHLALAKRGHELH 114 (488)
Q Consensus 72 ~~~~~mkIl~i~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~ 114 (488)
++....||++|..+||+....-| +...+.++.+.|++.||+|.
T Consensus 366 ~pn~eKriAiil~nyP~~~~~ig~a~gLD~p~Sl~~iL~~Lk~~GY~v~ 414 (1122)
T TIGR02257 366 KPNAERRIALVLANYPVRDGRIGNGVGLDTPASVVNILHALKEQGYDLG 414 (1122)
T ss_pred CChhhCEEEEEecCCCCCcCccceecCCChHHHHHHHHHHHHHCCCCCC
Confidence 33344699999999997544444 23578899999999999995
No 459
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=32.62 E-value=53 Score=37.30 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=31.8
Q ss_pred CCceEEEEEecCCCCCCCCCc------HHHHHHHHHHHHHHCCCeEE
Q 011355 74 LKLLKIALFVKKWPHRSHAGG------LERHALTLHLALAKRGHELH 114 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~ 114 (488)
....||++|..+|||....-| +...+.++.+.|++.||+|.
T Consensus 441 n~eKKVAIil~nyPpg~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 487 (1220)
T PLN03069 441 KAEKKLAITVFSFPPDKGNVGTAAYLNVFGSIFSVLKDLKRDGYNVG 487 (1220)
T ss_pred hhhCEEEEEecCCCCCCCccccccccChHHHHHHHHHHHHHCCCCcC
Confidence 344599999999998654433 23568899999999999994
No 460
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=32.53 E-value=68 Score=29.91 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=23.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++.. |.++. .++..|.+.||+|+++...
T Consensus 1 m~I~IiG~--------G~~G~---~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA--------GAIGG---LFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC--------CHHHH---HHHHHHHhCCCeEEEEECC
Confidence 78888874 33332 5778888899999999874
No 461
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=32.49 E-value=2.2e+02 Score=26.62 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch--hHHhhhCCcEEEeCc-cCHHHHHHHHHhcCEEEeC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG--ARYRDLGTNVIVLGP-LDQTRLAMFYNAIDIFVNP 374 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~--~~~~~l~~~V~~~g~-v~~~~l~~~~~~adv~v~p 374 (488)
+.+...+|++.+.++. ++..++|++++..- +.+....+.+.+.+. -+.+|+. ++..||.+|.+
T Consensus 189 ~~~Yy~~Ai~~i~~~~----~~~~f~ifSDD~~w~k~~l~~~~~~~~~~~~~~~~~Dl~-lms~C~~~Iis 254 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKV----KNPKFFIFSDDIEWCKENLKFSNGDVYFSGNNSPYEDLY-LMSQCKHFIIS 254 (298)
T ss_pred CHHHHHHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHhhcCCcEEEECCCCHHHHHH-HHHhCCcEEEC
Confidence 3467889999999888 89999999986532 334444456667665 3466776 68999998875
No 462
>PRK00170 azoreductase; Reviewed
Probab=32.48 E-value=1e+02 Score=26.59 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCCCCCC-cHHH-HHHHHHHHHHHC--CCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAG-GLER-HALTLHLALAKR--GHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~g-G~~~-~~~~l~~~L~~~--G~~V~v~~~~~ 120 (488)
|||++|..+. ... |... .+..+++.|.+. |++|.++-...
T Consensus 2 mkil~i~gSp----r~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~ 45 (201)
T PRK00170 2 SKVLVIKSSI----LGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAA 45 (201)
T ss_pred CeEEEEecCC----CCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 7999998642 233 5544 455667788887 89999887654
No 463
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=32.42 E-value=2.7e+02 Score=24.92 Aligned_cols=77 Identities=8% Similarity=0.110 Sum_probs=43.9
Q ss_pred hCCcEEEeCc-cCHH---HHHHHHHhcCEEEe--CCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC
Q 011355 346 LGTNVIVLGP-LDQT---RLAMFYNAIDIFVN--PTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP 419 (488)
Q Consensus 346 l~~~V~~~g~-v~~~---~l~~~~~~adv~v~--ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~ 419 (488)
+.++|.+.|. ++.+ ...+....||++|. +|..-.+. ..+.+.+..|.|+|.-|......+ .+....+++..
T Consensus 150 lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa-~~l~~~~~~~~~~v~iN~~~~~~~--~~~~~d~~~~~ 226 (235)
T cd01408 150 VKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPF-ASLPSRVPSEVPRVLINREPVGHL--GKRPFDVALLG 226 (235)
T ss_pred ccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccH-HHHHHHHhCCCcEEEEeCCCCCCC--CCCCcCEEEeC
Confidence 4578888885 4543 34456778999655 44422222 235567778999998876654311 01233445544
Q ss_pred CHHHHH
Q 011355 420 QVESVK 425 (488)
Q Consensus 420 d~~~la 425 (488)
+.+++.
T Consensus 227 ~~~~~l 232 (235)
T cd01408 227 DCDDGV 232 (235)
T ss_pred CHHHHH
Confidence 555543
No 464
>PRK06953 short chain dehydrogenase; Provisional
Probab=32.20 E-value=79 Score=27.74 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=24.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 1 ~~~vlvtG------~sg~iG~---~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVG------ASRGIGR---EFVRQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEc------CCCchhH---HHHHHHHhCCCEEEEEECC
Confidence 56666664 4466655 6788888899999888654
No 465
>PRK13054 lipid kinase; Reviewed
Probab=32.17 E-value=1.2e+02 Score=28.43 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=27.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..||+++|.. | . +|.......+.+.|.+.|+++.+.....
T Consensus 2 ~~~~~~~i~N--~---~-~~~~~~~~~~~~~l~~~g~~~~v~~t~~ 41 (300)
T PRK13054 2 TFPKSLLILN--G---K-SAGNEELREAVGLLREEGHTLHVRVTWE 41 (300)
T ss_pred CCceEEEEEC--C---C-ccchHHHHHHHHHHHHcCCEEEEEEecC
Confidence 3467777775 1 2 3345666778888999999988766553
No 466
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=32.10 E-value=91 Score=29.80 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=28.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
.+|||++.-+ ||+...+ -+..|.++||||.=++.....
T Consensus 2 ~~~kV~v~mS--------GGVDSSV--aA~lLk~QGyeViGl~m~~~~ 39 (356)
T COG0482 2 KKKKVLVGMS--------GGVDSSV--AAYLLKEQGYEVIGLFMKNWD 39 (356)
T ss_pred CCcEEEEEcc--------CCHHHHH--HHHHHHHcCCeEEEEEEEeec
Confidence 5678777654 8888765 455678899999999887544
No 467
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=32.05 E-value=1.4e+02 Score=25.42 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
...|=...+..|+.+|+++|+.|.++-.+..
T Consensus 8 GG~GKTt~a~~la~~la~~g~~VlliD~D~~ 38 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARKGKKVLLIDLDPQ 38 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred CCccHHHHHHHHHhccccccccccccccCcc
Confidence 4456667888999999999999999988753
No 468
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=32.03 E-value=81 Score=28.08 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=23.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
||.++|+. ..||... .+++.|.++|++|.++..
T Consensus 1 ~~~~lItG------a~g~iG~---~l~~~l~~~g~~v~~~~~ 33 (247)
T PRK09730 1 MAIALVTG------GSRGIGR---ATALLLAQEGYTVAVNYQ 33 (247)
T ss_pred CCEEEEeC------CCchHHH---HHHHHHHHCCCEEEEEeC
Confidence 56667764 4566655 688889999999987543
No 469
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.02 E-value=60 Score=29.27 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
|+++|+. ..+|+.+ .+++.|.+.|++|.++..
T Consensus 9 k~~lItG------as~gIG~---aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 9 KVAIITG------CNTGLGQ---GMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CEEEEeC------CCchHHH---HHHHHHHHCCCEEEEecC
Confidence 6677774 4577766 688999999999988754
No 470
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=32.02 E-value=1.4e+02 Score=26.69 Aligned_cols=39 Identities=26% Similarity=0.171 Sum_probs=24.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~ 121 (488)
|||++... ...|=.+.+..|+..|.++ |++|.++-.+++
T Consensus 1 mkIaI~GK------GG~GKTtiaalll~~l~~~~~~~VLvVDaDpd 40 (255)
T COG3640 1 MKIAITGK------GGVGKTTIAALLLKRLLSKGGYNVLVVDADPD 40 (255)
T ss_pred CeEEEecC------CCccHHHHHHHHHHHHHhcCCceEEEEeCCCC
Confidence 78888764 2334344444436666655 599999988763
No 471
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=31.93 E-value=62 Score=28.29 Aligned_cols=34 Identities=35% Similarity=0.436 Sum_probs=25.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|+|+++.. ...|+ .|++.|.+.||||.+-+...+
T Consensus 2 ~~~~i~Gt-----GniG~------alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 2 MIIAIIGT-----GNIGS------ALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred cEEEEecc-----ChHHH------HHHHHHHhCCCeEEEecCCCh
Confidence 66777764 13444 589999999999999977654
No 472
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=31.88 E-value=3.1e+02 Score=26.24 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=33.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||++++. +....|....+..+++.+.+.|++|.-+.....
T Consensus 1 ~ri~Il~s----GG~apG~N~~i~~~v~~~~~~g~~v~G~~~G~~ 41 (338)
T cd00363 1 KKIGVLTS----GGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYA 41 (338)
T ss_pred CeEEEEcc----CCCchhHHHHHHHHHHHHHHCCCEEEEEecChH
Confidence 68999988 445678888899999999999998888876544
No 473
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=31.81 E-value=1.5e+02 Score=26.79 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=29.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+||.++.. +....|-...+..++.+|+++|..|.++-.++.
T Consensus 2 ~~i~~i~~----~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 2 AKIHMVLQ----GKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred CeEEEEec----CCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46666665 223445556688999999999999998877653
No 474
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=31.80 E-value=81 Score=29.63 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=30.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||+++.....+ ...-.-.....+.++|.+.||+|.++....
T Consensus 1 ~~~~~~gg~s~--e~~~s~~s~~~i~~al~~~g~~v~~i~~~~ 41 (315)
T TIGR01205 1 RVAVLFGGKSA--EHEISLVSAAAVLKALRDLGYDVYPVDIDK 41 (315)
T ss_pred CEEEEeCCCCC--CeeeeHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 57788765533 444445677899999999999999998764
No 475
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=31.77 E-value=1.2e+02 Score=26.78 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=27.8
Q ss_pred EEEEEecCCCCCCCCCcH-HHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGL-ERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||+++..+.- ..+|. ..-+..-...|.+.|++|+++++..
T Consensus 3 kVlills~~~---~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 3 KIAVILSGCG---VYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred EEEEEEccCC---CCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 7888875321 22343 3445566788999999999999865
No 476
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=31.77 E-value=4.3e+02 Score=25.38 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=34.9
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
++||+++++ +...-|....+..+.+.+...|.+|.-+-....+-
T Consensus 2 ~kkIaIlTS----GGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL 45 (347)
T COG0205 2 MKKIAILTS----GGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGL 45 (347)
T ss_pred CceEEEEcc----CCCCccHHHHHHHHHHHHHHcCCEEEEEecchhhh
Confidence 469999998 44556778888899999999999999887765443
No 477
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=31.70 E-value=1.5e+02 Score=28.21 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=32.1
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.++.||+.++. ....|-...+.+|+.+|+++|+.|.++-.+..
T Consensus 28 ~~~~~ii~v~g-----kgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 28 TKKTQIIAIYG-----KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred CCCCeEEEEEC-----CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 35567777763 23456667789999999999999999977643
No 478
>PRK13761 hypothetical protein; Provisional
Probab=31.68 E-value=3.7e+02 Score=23.86 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=54.1
Q ss_pred hcCEEEeCCCCCCCCChHHHHHH-HcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011355 367 AIDIFVNPTLRAQGLDHTVLEAM-LSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLV 445 (488)
Q Consensus 367 ~adv~v~ps~~~eg~~~~~lEAm-a~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~ 445 (488)
.||+++.|-- .| ==.||+ .+|+-||+-|....+. -- ...-+. =++.+..++-.+... -..++.+.+.
T Consensus 150 ~ADVVLVPLE--DG---DR~EaL~~mGK~VI~IDLNPLSR-Ta--r~A~it---IVDni~RA~p~m~~~-~~elk~~~~~ 217 (248)
T PRK13761 150 SADVVLVPLE--DG---DRTEALVKMGKTVIAIDLNPLSR-TA--RTATIT---IVDNITRAVPNMTEY-ARELKKKDRE 217 (248)
T ss_pred eccEEEecCC--CC---cHHHHHHHcCCeEEEEeCCCccc-cc--ccCcee---eehhHHHHHHHHHHH-HHHHhcCCHH
Confidence 7999999983 44 225555 5899999998877652 11 111111 245666666666554 3444444444
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 446 ARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 446 a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
..+.+.+.|+-++..+.-.+.+.+
T Consensus 218 el~~iv~~~dN~~~L~~al~~I~~ 241 (248)
T PRK13761 218 ELEEIVENYDNKKNLSEALKEIRE 241 (248)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555556778887776655554443
No 479
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=31.50 E-value=64 Score=36.52 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=32.4
Q ss_pred CCCceEEEEEecCCCCCCCCCc------HHHHHHHHHHHHHHCCCeEE
Q 011355 73 PLKLLKIALFVKKWPHRSHAGG------LERHALTLHLALAKRGHELH 114 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~ 114 (488)
+....||++|..+|||+...-| +...+.++.+.|++.||+|.
T Consensus 435 ~n~eKkvAIil~nyPpg~~~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 482 (1209)
T PRK13405 435 ERAERKVAVVLFNFPPNAGATGTAAYLSVFESLFNTLRAMKAEGYTVE 482 (1209)
T ss_pred ChhhCEEEEEecCCCCCCCccccccccChHHHHHHHHHHHHHCCCCCC
Confidence 3344599999999998654433 23568899999999999995
No 480
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=31.47 E-value=1e+02 Score=26.67 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=28.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~ 119 (488)
|||+|+.. +..|-.+..+..+++.+.+. |++|.++-..
T Consensus 1 ~kilIiY~-----S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~ 39 (197)
T TIGR01755 1 VKVLVLYY-----SMYGHIETMARAVAEGAREVDGAEVVVKRVP 39 (197)
T ss_pred CeEEEEEe-----CCCCHHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 58888875 24577777788888888775 9999988754
No 481
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=31.45 E-value=1.3e+02 Score=24.22 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
..|-.+..+..+++.|.++|++|.++.....
T Consensus 6 ~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~ 36 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRERGVEVRVVDLDDF 36 (143)
T ss_dssp SSSHHHHHHHHHHHHHHHTTSEEEEEEGGGS
T ss_pred CchhHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 6788899999999999999999999988753
No 482
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=31.28 E-value=1e+02 Score=29.60 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=26.4
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+..|||++.. ..|.++. .+++.|.++|++|.++...
T Consensus 7 ~~~~~~vLVtG-------~~GfIG~---~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 7 ESATGTYCVTG-------ATGYIGS---WLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred ccCCCEEEEEC-------CCcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 34668887775 2355554 6888899999999987653
No 483
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.11 E-value=81 Score=28.12 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..||... .+++.|.+.|++|.++....
T Consensus 9 as~giG~---~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 9 ATSDIAR---ACARRYAAAGARLYLAARDV 35 (243)
T ss_pred CCcHHHH---HHHHHHHhcCCEEEEEeCCH
Confidence 3466654 68888999999998887653
No 484
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=31.01 E-value=2.4e+02 Score=26.14 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=47.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC--CeEEEEecCCCCCCCC--CCCCceEEEecCCCCccCcchhHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG--HELHIFTASCLNCSFP--TYPISSLYFHLSKPTAAGYLDQSI 150 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ 150 (488)
++|||+++.+. +| .-+..+.++..... .+|.++..+..+.... ..+++...+.... .......
T Consensus 83 ~~~ki~vl~Sg-------~g--~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~---~~~~~~e- 149 (280)
T TIGR00655 83 KLKRVAILVSK-------ED--HCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATK---DNRVEHE- 149 (280)
T ss_pred CCcEEEEEEcC-------CC--hhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCC---cchhhhH-
Confidence 56899999851 23 23456777766542 4666665554332111 1344443333211 0111111
Q ss_pred HHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 151 VWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 151 ~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
..+....+.. ++|+|++..+. ++.-+....+.-+.-+|.
T Consensus 150 --~~~~~~l~~~-~~Dlivlagym~il~~~~l~~~~~~iINiHp 190 (280)
T TIGR00655 150 --KRQLELLKQY-QVDLVVLAKYMQILSPDFVKRYPNKIINIHH 190 (280)
T ss_pred --HHHHHHHHHh-CCCEEEEeCchhhCCHHHHhhccCCEEEecC
Confidence 1222222222 89999997643 222222222335666775
No 485
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=30.95 E-value=1.1e+02 Score=30.00 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=27.0
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+++|||+++.. | .....++.++.+.|++|.++...+.
T Consensus 10 ~~~~~ilIiG~---------g--~~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 10 PSATRVMLLGS---------G--ELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred CCCCEEEEECC---------C--HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 36789999864 1 1234677788899999999987654
No 486
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=30.84 E-value=3.6e+02 Score=24.78 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=57.1
Q ss_pred CCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCC--hHHHHHHHcCCcEEEeCCCCcc
Q 011355 327 RSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLD--HTVLEAMLSGKPLMATRLASIV 404 (488)
Q Consensus 327 ~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~--~~~lEAma~G~PVI~~~~~~~~ 404 (488)
+.-++.++|.+...+.++..+ +...+.-. .. ..|+++.-.-..+++- ...+-+.+.|.|.|++|-
T Consensus 90 ~~~kv~viG~~~l~~~l~~~G--~~~~~~~~--~~-----~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNp---- 156 (269)
T COG0647 90 PGKKVYVIGEEGLKEELEGAG--FELVDEEE--PA-----RVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNP---- 156 (269)
T ss_pred CCCEEEEECCcchHHHHHhCC--cEEeccCC--CC-----cccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCC----
Confidence 557889999888778777654 22333211 11 1677776543333332 355678889999999984
Q ss_pred cceeecCCceeEeCCCHHHHHHHHHHHHhc
Q 011355 405 GSVIVGTDMGYLFSPQVESVKKALYGIWAD 434 (488)
Q Consensus 405 ~e~v~~~~~g~l~~~d~~~la~~i~~ll~~ 434 (488)
+.....+.|+ .+ ..-+++..++.+-..
T Consensus 157 -D~~~p~~~g~-~p-gaGai~~~~~~~tg~ 183 (269)
T COG0647 157 -DLTVPTERGL-RP-GAGAIAALLEQATGR 183 (269)
T ss_pred -CccccCCCCC-cc-CcHHHHHHHHHhhCC
Confidence 3344455663 33 678888888876543
No 487
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=30.81 E-value=92 Score=26.75 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=26.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 120 (488)
+||++-.. .+.+.....++++.|.+ .|++|.++.+..
T Consensus 2 k~IllgVT-------Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 2 KRLIVGIS-------GASGAIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CEEEEEEE-------CHHHHHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 36666654 13345568899999999 599999998864
No 488
>PRK05246 glutathione synthetase; Provisional
Probab=30.81 E-value=54 Score=31.00 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=29.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||+|+.+.. . ...-.......|+++-+++||+|.++++.+-
T Consensus 2 ~~~~~~~~~~--~-~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl 43 (316)
T PRK05246 2 MKVAFQMDPI--E-SINIKKDSTFAMMLEAQRRGHELFYYEPDDL 43 (316)
T ss_pred ceEEEEeCCH--H-HCCCCCChHHHHHHHHHHcCCEEEEEehhhc
Confidence 8999998633 1 1122223345699999999999999998753
No 489
>PRK05717 oxidoreductase; Validated
Probab=30.78 E-value=1e+02 Score=27.77 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+.|.++|+. ..||... .+++.|.++|++|.++...
T Consensus 8 ~~~k~vlItG------~sg~IG~---~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTG------AARGIGL---GIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred cCCCEEEEeC------CcchHHH---HHHHHHHHcCCEEEEEcCC
Confidence 3456677774 4566665 6889999999999887543
No 490
>PRK03202 6-phosphofructokinase; Provisional
Probab=30.75 E-value=3.2e+02 Score=25.91 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=33.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
|||++++. +....|....+..+++.+.+.|++|.-+.....+
T Consensus 2 k~i~Il~s----GG~apG~Na~i~~~~~~~~~~g~~v~g~~~G~~G 43 (320)
T PRK03202 2 KRIGVLTS----GGDAPGMNAAIRAVVRTAISEGLEVYGIYDGYAG 43 (320)
T ss_pred cEEEEECC----CCCcHHHHHHHHHHHHHHHHCCCeEEEEecChhh
Confidence 58999987 4456788888899999998899988887665543
No 491
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.74 E-value=2.4e+02 Score=25.75 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=33.3
Q ss_pred CceeEeCC-CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 412 DMGYLFSP-QVESVKKALYGIWAD-GREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 412 ~~g~l~~~-d~~~la~~i~~ll~~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
.-.++.+| +...+++.|.+.+.. +|+......+|+.++..+ .+..-+.+.+.+..
T Consensus 111 dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~~ 167 (266)
T cd01018 111 DPHIWLSPANAKIMAENIYEALAELDPQNATYYQANLDALLAE---LDALDSEIRTILSK 167 (266)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 34566777 788888888777652 266666666676666543 44444444444443
No 492
>PRK05884 short chain dehydrogenase; Provisional
Probab=30.64 E-value=95 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||+++.. ..||..+ .+++.|.++|++|.++...
T Consensus 1 m~vlItG-------as~giG~---~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 1 VEVLVTG-------GDTDLGR---TIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred CeEEEEe-------CCchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5766554 3466665 6888899999999988654
No 493
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.41 E-value=1.4e+02 Score=25.90 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
...|=.+.+..|+..+..+|..|.+++.+.
T Consensus 10 tGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 10 TGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred CCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 567778888999999998899999999865
No 494
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=30.39 E-value=1e+02 Score=30.19 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=26.7
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+..|||+++. ..|++++ .+++.|.++||+|.+++...
T Consensus 58 ~~~~kVLVtG-------atG~IG~---~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 58 PKDVTVLVVG-------ATGYIGK---FVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCCEEEEEC-------CCcHHHH---HHHHHHHHCCCEEEEEEech
Confidence 3557877765 3455554 67888889999999988654
No 495
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.39 E-value=1.3e+02 Score=23.00 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=23.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||++++. ..-+.+..+..+-+.+.++|.++.+-....
T Consensus 3 kILlvCg------~G~STSlla~k~k~~~~e~gi~~~i~a~~~ 39 (104)
T PRK09590 3 KALIICA------AGMSSSMMAKKTTEYLKEQGKDIEVDAITA 39 (104)
T ss_pred EEEEECC------CchHHHHHHHHHHHHHHHCCCceEEEEecH
Confidence 6888885 112334455566666777899988876653
No 496
>PHA02518 ParA-like protein; Provisional
Probab=30.38 E-value=1.4e+02 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 92 AGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 92 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|-.+.+.+|+.+|+++|+.|.++-.+.
T Consensus 11 GvGKTT~a~~la~~la~~g~~vlliD~D~ 39 (211)
T PHA02518 11 GAGKTTVATNLASWLHADGHKVLLVDLDP 39 (211)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34445678899999999999999998865
No 497
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=29.94 E-value=4.9e+02 Score=24.74 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=64.1
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEe
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 373 (488)
+.|+..|.. ....++|...|.+++ -++.++ . +..+-.+|.+.+.+..+..+.+|.
T Consensus 204 itiia~G~~-----v~~al~Aa~~L~~~G----i~~~VI--d--------------~~~ikPlD~~~i~~~~~~t~~vv~ 258 (327)
T CHL00144 204 ITILTYSRM-----RHHVLQAVKVLVEKG----YDPEII--D--------------LISLKPLDLGTISKSVKKTHKVLI 258 (327)
T ss_pred EEEEEccHH-----HHHHHHHHHHHHhcC----CCEEEE--e--------------cCcCCCCCHHHHHHHHHhhCcEEE
Confidence 667666753 556778888776644 333333 2 233445677777788877765444
Q ss_pred --CCCCCCCCChHHHHHHHcC------CcEEEeCCCCcccceee-cCCceeEeCCCHHHHHHHHHHHHhc
Q 011355 374 --PTLRAQGLDHTVLEAMLSG------KPLMATRLASIVGSVIV-GTDMGYLFSPQVESVKKALYGIWAD 434 (488)
Q Consensus 374 --ps~~~eg~~~~~lEAma~G------~PVI~~~~~~~~~e~v~-~~~~g~l~~~d~~~la~~i~~ll~~ 434 (488)
-.....|+|-.+.|.++-. .|+.--..+... +. .+..-.++-.|.+.+++++.+++++
T Consensus 259 vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~---~~~~~~~~~~~gl~~~~I~~~i~~~l~~ 325 (327)
T CHL00144 259 VEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVP---TPYNGPLEEATVIQPAQIIEAVEQIITN 325 (327)
T ss_pred EECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCc---CCCCccHHHHhCCCHHHHHHHHHHHHhc
Confidence 1222457888888887544 366543222211 11 1111112223888999999888765
No 498
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=29.85 E-value=91 Score=28.18 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=24.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|++++.. ..+|..+ .+++.|.++|++|.++...
T Consensus 1 m~vlItG-------as~gIG~---aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 1 MNVLVTA-------SSRGIGF---NVARELLKKGARVVISSRN 33 (259)
T ss_pred CeEEEEc-------CCcHHHH---HHHHHHHHcCCEEEEEeCC
Confidence 5666665 3466655 6889999999998887654
No 499
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=29.74 E-value=93 Score=28.24 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=26.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
|||++..+. ... ..-+..|+++|++ +++|+|+++..+...
T Consensus 1 M~ILlTNDD-----Gi~--a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 1 MNILVTNDD-----GIT--SPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred CeEEEECCC-----CCC--CHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 788888752 111 2235578888875 579999998765443
No 500
>PRK05569 flavodoxin; Provisional
Probab=29.64 E-value=1.6e+02 Score=23.69 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=27.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||+++.. +..|..+..+..+++.+.+.|.+|.++...
T Consensus 3 ki~iiY~-----S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 3 KVSIIYW-----SCGGNVEVLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred eEEEEEE-----CCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 6666653 246777888888899998889998877654
Done!