Query 011355
Match_columns 488
No_of_seqs 413 out of 1934
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 06:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 1.4E-46 4.8E-51 368.5 34.7 362 75-476 3-385 (394)
2 3c48_A Predicted glycosyltrans 100.0 1.7E-45 5.8E-50 366.0 40.3 382 74-477 18-432 (438)
3 3fro_A GLGA glycogen synthase; 100.0 3.7E-46 1.3E-50 370.8 31.6 380 75-474 1-434 (439)
4 2r60_A Glycosyl transferase, g 100.0 1.6E-45 5.4E-50 372.1 32.5 388 75-476 6-465 (499)
5 1rzu_A Glycogen synthase 1; gl 100.0 5.9E-45 2E-49 366.8 23.0 383 77-474 1-479 (485)
6 2qzs_A Glycogen synthase; glyc 100.0 1.3E-43 4.3E-48 357.1 28.4 382 77-474 1-480 (485)
7 2gek_A Phosphatidylinositol ma 100.0 1.6E-42 5.4E-47 341.1 35.0 356 75-475 19-388 (406)
8 2jjm_A Glycosyl transferase, g 100.0 8E-43 2.7E-47 341.7 32.7 361 75-477 12-392 (394)
9 3oy2_A Glycosyltransferase B73 100.0 7.4E-43 2.5E-47 344.2 32.3 344 77-475 1-395 (413)
10 2x6q_A Trehalose-synthase TRET 100.0 9.9E-43 3.4E-47 343.6 30.2 352 74-471 38-415 (416)
11 2iw1_A Lipopolysaccharide core 100.0 1.3E-42 4.5E-47 337.8 26.6 359 77-472 1-373 (374)
12 3vue_A GBSS-I, granule-bound s 100.0 2.1E-41 7.3E-46 340.5 34.5 383 75-472 8-513 (536)
13 3s28_A Sucrose synthase 1; gly 100.0 9.5E-42 3.2E-46 353.3 32.4 379 74-470 276-769 (816)
14 2iuy_A Avigt4, glycosyltransfe 100.0 1E-40 3.5E-45 320.4 26.7 311 74-474 1-339 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 1.5E-39 5.2E-44 317.8 12.3 349 74-472 44-411 (413)
16 2vsy_A XCC0866; transferase, g 100.0 2.5E-33 8.7E-38 287.5 25.6 327 73-473 202-562 (568)
17 2hy7_A Glucuronosyltransferase 100.0 5.1E-34 1.7E-38 279.0 19.1 323 75-472 13-381 (406)
18 3beo_A UDP-N-acetylglucosamine 100.0 1.5E-33 5.1E-38 274.0 18.6 346 75-468 7-374 (375)
19 1vgv_A UDP-N-acetylglucosamine 100.0 7.4E-34 2.5E-38 277.1 15.2 352 77-473 1-379 (384)
20 1f0k_A MURG, UDP-N-acetylgluco 100.0 2E-32 7E-37 264.9 22.5 326 76-473 6-360 (364)
21 1uqt_A Alpha, alpha-trehalose- 100.0 1.1E-29 3.8E-34 250.9 27.0 276 164-470 123-454 (482)
22 2bfw_A GLGA glycogen synthase; 100.0 1.2E-29 4E-34 223.7 18.2 182 263-455 2-200 (200)
23 3nb0_A Glycogen [starch] synth 100.0 7.8E-29 2.7E-33 245.1 23.8 302 164-472 181-635 (725)
24 3t5t_A Putative glycosyltransf 100.0 6.5E-27 2.2E-31 228.0 28.4 280 164-471 149-474 (496)
25 1v4v_A UDP-N-acetylglucosamine 100.0 1.4E-27 4.7E-32 232.0 22.3 342 76-472 5-366 (376)
26 3qhp_A Type 1 capsular polysac 100.0 9.6E-28 3.3E-32 204.7 17.3 158 293-462 2-166 (166)
27 2xci_A KDO-transferase, 3-deox 100.0 2.4E-27 8.1E-32 228.9 18.5 295 91-455 48-365 (374)
28 2f9f_A First mannosyl transfer 99.9 1.6E-25 5.5E-30 192.8 12.4 146 287-445 18-173 (177)
29 3rhz_A GTF3, nucleotide sugar 99.9 2.8E-23 9.6E-28 195.7 27.2 303 76-462 10-328 (339)
30 3dzc_A UDP-N-acetylglucosamine 99.9 1.4E-24 4.9E-29 210.8 18.8 332 75-449 24-381 (396)
31 3ot5_A UDP-N-acetylglucosamine 99.9 5.5E-24 1.9E-28 206.9 22.0 346 74-466 25-391 (403)
32 3otg_A CALG1; calicheamicin, T 99.9 1.7E-23 6E-28 205.6 19.6 344 73-469 17-409 (412)
33 2iyf_A OLED, oleandomycin glyc 99.9 1.5E-20 5.2E-25 185.7 25.4 357 75-471 6-402 (430)
34 3s2u_A UDP-N-acetylglucosamine 99.9 2.8E-20 9.5E-25 178.8 25.0 326 77-467 3-355 (365)
35 4fzr_A SSFS6; structural genom 99.9 1.3E-21 4.5E-26 191.2 13.7 338 72-465 11-397 (398)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.8 3.3E-20 1.1E-24 180.9 19.0 163 290-468 216-388 (391)
37 3ia7_A CALG4; glycosysltransfe 99.8 5.8E-19 2E-23 172.7 23.8 353 77-469 5-399 (402)
38 4hwg_A UDP-N-acetylglucosamine 99.8 1.9E-19 6.6E-24 173.2 16.7 344 76-468 9-375 (385)
39 3rsc_A CALG2; TDP, enediyne, s 99.8 4.1E-18 1.4E-22 167.4 23.8 355 75-469 19-414 (415)
40 3oti_A CALG3; calicheamicin, T 99.8 5.3E-18 1.8E-22 165.6 20.1 158 290-467 230-396 (398)
41 2p6p_A Glycosyl transferase; X 99.8 2.6E-17 8.9E-22 159.9 21.4 157 291-468 209-379 (384)
42 2yjn_A ERYCIII, glycosyltransf 99.7 5.3E-16 1.8E-20 153.4 22.2 159 290-468 265-435 (441)
43 2iya_A OLEI, oleandomycin glyc 99.7 8.1E-15 2.8E-19 144.2 27.7 160 291-468 254-421 (424)
44 3q3e_A HMW1C-like glycosyltran 99.7 1.7E-14 5.8E-19 142.8 24.9 254 164-470 349-627 (631)
45 4amg_A Snogd; transferase, pol 99.6 2.5E-14 8.6E-19 139.6 16.4 161 289-466 234-398 (400)
46 1iir_A Glycosyltransferase GTF 99.5 5.2E-13 1.8E-17 130.8 22.4 152 292-466 238-398 (415)
47 3h4t_A Glycosyltransferase GTF 99.5 4.6E-13 1.6E-17 130.6 21.0 165 280-468 211-382 (404)
48 1rrv_A Glycosyltransferase GTF 99.4 4.2E-12 1.4E-16 124.4 18.5 137 293-450 238-384 (416)
49 4gyw_A UDP-N-acetylglucosamine 99.4 6E-11 2.1E-15 123.2 25.2 183 281-474 512-709 (723)
50 2o6l_A UDP-glucuronosyltransfe 99.4 2.3E-12 8E-17 109.4 10.2 139 281-439 10-158 (170)
51 2c4m_A Glycogen phosphorylase; 99.0 9.9E-09 3.4E-13 104.0 15.5 234 232-472 400-721 (796)
52 1l5w_A Maltodextrin phosphoryl 98.9 1.4E-08 4.8E-13 102.9 14.4 235 232-472 411-732 (796)
53 2gj4_A Glycogen phosphorylase, 98.9 3.3E-08 1.1E-12 100.7 16.9 234 231-472 434-756 (824)
54 2acv_A Triterpene UDP-glucosyl 98.8 4.4E-06 1.5E-10 82.4 28.8 191 230-434 207-425 (463)
55 2pq6_A UDP-glucuronosyl/UDP-gl 98.8 3.6E-06 1.2E-10 83.6 26.8 144 291-451 294-454 (482)
56 1psw_A ADP-heptose LPS heptosy 98.7 3.5E-06 1.2E-10 79.9 21.8 109 278-398 166-286 (348)
57 3hbf_A Flavonoid 3-O-glucosylt 98.6 3.8E-05 1.3E-09 74.9 28.4 205 230-450 211-428 (454)
58 2c1x_A UDP-glucose flavonoid 3 98.6 8.2E-06 2.8E-10 80.2 23.8 197 232-450 211-426 (456)
59 2vch_A Hydroquinone glucosyltr 98.6 6.6E-05 2.3E-09 74.2 30.2 131 291-434 267-429 (480)
60 3hbm_A UDP-sugar hydrolase; PS 98.6 3.6E-07 1.2E-11 83.0 11.6 240 77-400 1-252 (282)
61 3l7i_A Teichoic acid biosynthe 98.5 4.2E-06 1.4E-10 87.6 20.2 186 231-434 475-683 (729)
62 3tov_A Glycosyl transferase fa 98.2 0.00014 4.9E-09 68.6 19.2 107 282-400 175-288 (349)
63 2jzc_A UDP-N-acetylglucosamine 97.8 3.2E-05 1.1E-09 67.3 7.1 75 349-432 115-197 (224)
64 2gt1_A Lipopolysaccharide hept 97.7 0.0044 1.5E-07 57.8 19.9 130 292-434 178-322 (326)
65 1ygp_A Yeast glycogen phosphor 95.7 0.15 5.2E-06 52.2 13.8 134 290-426 598-768 (879)
66 1xv5_A AGT, DNA alpha-glucosyl 93.7 2.6 8.8E-05 35.1 33.5 333 76-462 1-394 (401)
67 3ty2_A 5'-nucleotidase SURE; s 86.7 3.3 0.00011 36.2 8.9 42 75-124 10-51 (261)
68 2d1p_A TUSD, hypothetical UPF0 85.7 6.1 0.00021 31.0 9.3 80 75-171 11-91 (140)
69 2ixd_A LMBE-related protein; h 85.3 6.8 0.00023 34.1 10.4 43 75-123 2-44 (242)
70 4gi5_A Quinone reductase; prot 83.5 1.8 6.3E-05 38.7 6.0 44 73-120 19-63 (280)
71 2hy5_A Putative sulfurtransfer 80.4 3.8 0.00013 31.7 6.2 42 77-121 1-43 (130)
72 3jte_A Response regulator rece 79.8 17 0.00057 27.9 10.1 104 329-434 4-123 (143)
73 3kcn_A Adenylate cyclase homol 79.6 20 0.00067 27.9 10.7 107 328-434 4-123 (151)
74 2zay_A Response regulator rece 79.5 17 0.00059 28.0 10.1 106 327-434 7-128 (147)
75 1uan_A Hypothetical protein TT 79.4 16 0.00056 31.3 10.5 41 77-123 2-42 (227)
76 2bw0_A 10-FTHFDH, 10-formyltet 78.6 11 0.00039 34.4 9.6 35 75-120 21-55 (329)
77 4b4o_A Epimerase family protei 77.9 2.5 8.6E-05 38.1 5.1 33 77-119 1-33 (298)
78 1k68_A Phytochrome response re 75.8 23 0.00079 26.7 10.0 104 329-434 3-131 (140)
79 3nbm_A PTS system, lactose-spe 75.6 8.1 0.00028 28.7 6.4 40 75-120 5-44 (108)
80 3q0i_A Methionyl-tRNA formyltr 75.1 16 0.00056 33.2 9.6 36 74-120 5-40 (318)
81 3ehd_A Uncharacterized conserv 74.4 11 0.00037 30.4 7.3 69 363-432 65-161 (162)
82 3hly_A Flavodoxin-like domain; 73.2 6.3 0.00022 31.7 5.8 38 77-119 1-38 (161)
83 3c97_A Signal transduction his 73.1 28 0.00097 26.4 11.4 104 329-434 11-130 (140)
84 2l2q_A PTS system, cellobiose- 72.8 5.1 0.00017 29.9 4.7 39 75-119 3-41 (109)
85 2phj_A 5'-nucleotidase SURE; S 72.7 18 0.00062 31.5 8.8 40 77-124 2-41 (251)
86 3hzh_A Chemotaxis response reg 72.7 25 0.00086 27.5 9.4 66 368-433 84-156 (157)
87 1kjn_A MTH0777; hypotethical p 72.6 9.1 0.00031 30.0 6.0 41 75-119 5-45 (157)
88 3cg4_A Response regulator rece 72.5 29 0.001 26.3 10.3 106 327-434 6-127 (142)
89 3heb_A Response regulator rece 72.2 26 0.00089 27.1 9.4 104 328-433 4-134 (152)
90 3auf_A Glycinamide ribonucleot 71.9 12 0.00042 32.1 7.6 36 75-119 21-58 (229)
91 1fmt_A Methionyl-tRNA FMet for 71.0 27 0.00094 31.6 10.1 35 75-120 2-36 (314)
92 3gt7_A Sensor protein; structu 70.9 35 0.0012 26.5 10.0 105 328-434 7-127 (154)
93 2pzm_A Putative nucleotide sug 70.8 19 0.00066 32.7 9.3 36 75-120 19-54 (330)
94 2qzj_A Two-component response 70.7 23 0.00077 27.0 8.5 105 328-434 4-121 (136)
95 2v4n_A Multifunctional protein 70.3 26 0.00089 30.6 9.3 41 76-124 1-41 (254)
96 3ilh_A Two component response 69.5 35 0.0012 26.0 10.8 106 327-434 8-139 (146)
97 3tqq_A Methionyl-tRNA formyltr 69.4 18 0.00061 32.8 8.5 36 75-121 1-36 (314)
98 3grc_A Sensor protein, kinase; 69.3 34 0.0012 25.8 10.6 105 328-434 6-127 (140)
99 3hdg_A Uncharacterized protein 69.1 34 0.0012 25.7 10.0 105 328-434 7-125 (137)
100 4ds3_A Phosphoribosylglycinami 68.9 18 0.00062 30.5 7.8 104 74-192 5-116 (209)
101 3f6r_A Flavodoxin; FMN binding 68.8 9.8 0.00034 29.9 6.0 39 77-120 2-40 (148)
102 3ew7_A LMO0794 protein; Q8Y8U8 68.8 6.3 0.00021 33.3 5.2 34 77-120 1-34 (221)
103 3gl9_A Response regulator; bet 68.0 34 0.0012 25.3 9.9 76 358-433 35-121 (122)
104 1e2b_A Enzyme IIB-cellobiose; 67.9 14 0.00049 27.2 6.2 40 75-120 2-41 (106)
105 4dzz_A Plasmid partitioning pr 66.9 11 0.00039 31.3 6.4 39 77-119 1-39 (206)
106 1f4p_A Flavodoxin; electron tr 66.8 7.3 0.00025 30.6 4.8 38 77-119 1-38 (147)
107 3h2s_A Putative NADH-flavin re 66.6 7 0.00024 33.2 5.0 34 77-120 1-34 (224)
108 3m6m_D Sensory/regulatory prot 66.6 41 0.0014 25.7 9.6 105 328-434 14-136 (143)
109 3t6k_A Response regulator rece 66.4 40 0.0014 25.5 10.5 77 358-434 37-124 (136)
110 3tqr_A Phosphoribosylglycinami 66.2 19 0.00066 30.5 7.5 103 75-192 4-113 (215)
111 1jx7_A Hypothetical protein YC 66.2 12 0.00039 28.0 5.7 42 77-121 2-45 (117)
112 2ywr_A Phosphoribosylglycinami 65.3 16 0.00056 31.0 7.0 34 77-119 2-37 (216)
113 1k66_A Phytochrome response re 65.3 43 0.0015 25.5 9.3 105 328-434 6-138 (149)
114 1qkk_A DCTD, C4-dicarboxylate 65.1 46 0.0016 25.7 10.0 77 358-434 36-121 (155)
115 1i3c_A Response regulator RCP1 64.9 45 0.0016 25.6 10.0 76 358-433 43-136 (149)
116 4e7p_A Response regulator; DNA 64.8 46 0.0016 25.6 10.0 67 368-434 67-140 (150)
117 2q62_A ARSH; alpha/beta, flavo 64.5 11 0.00037 33.0 5.8 44 73-120 31-75 (247)
118 2qsj_A DNA-binding response re 64.4 47 0.0016 25.6 9.9 105 328-434 3-124 (154)
119 3mc3_A DSRE/DSRF-like family p 63.8 14 0.00048 28.6 5.8 43 75-120 14-56 (134)
120 1hdo_A Biliverdin IX beta redu 63.6 9.7 0.00033 31.6 5.3 35 77-121 4-38 (206)
121 2iz6_A Molybdenum cofactor car 63.5 3.6 0.00012 33.8 2.3 68 363-434 103-174 (176)
122 2zki_A 199AA long hypothetical 63.4 12 0.0004 31.2 5.7 39 76-120 4-42 (199)
123 2a5l_A Trp repressor binding p 63.1 14 0.00046 30.8 6.1 40 76-120 5-44 (200)
124 1dbw_A Transcriptional regulat 62.7 44 0.0015 24.7 9.8 105 328-434 3-121 (126)
125 2f62_A Nucleoside 2-deoxyribos 62.5 34 0.0012 27.4 7.9 38 362-399 62-105 (161)
126 3sc6_A DTDP-4-dehydrorhamnose 62.4 13 0.00043 33.0 6.1 34 75-118 4-37 (287)
127 3tem_A Ribosyldihydronicotinam 62.2 11 0.00039 32.3 5.5 40 77-120 2-42 (228)
128 2j48_A Two-component sensor ki 62.1 24 0.00083 25.5 6.9 83 348-433 26-117 (119)
129 3rfo_A Methionyl-tRNA formyltr 61.9 21 0.00071 32.4 7.3 37 75-122 3-39 (317)
130 1fjh_A 3alpha-hydroxysteroid d 61.8 10 0.00035 33.0 5.3 35 77-120 1-35 (257)
131 3dqp_A Oxidoreductase YLBE; al 61.7 7.8 0.00027 32.8 4.4 35 77-121 1-35 (219)
132 3cnb_A DNA-binding response re 61.4 50 0.0017 24.9 10.4 105 328-434 8-130 (143)
133 3nhm_A Response regulator; pro 61.4 48 0.0016 24.7 10.9 77 358-434 36-122 (133)
134 1ydg_A Trp repressor binding p 60.9 17 0.00057 30.6 6.3 41 75-120 5-45 (211)
135 3h5i_A Response regulator/sens 60.4 52 0.0018 24.8 12.0 105 328-434 5-124 (140)
136 3hv2_A Response regulator/HD d 60.0 57 0.002 25.1 10.8 77 358-434 47-133 (153)
137 3ouz_A Biotin carboxylase; str 59.9 27 0.00093 33.4 8.3 23 98-120 17-39 (446)
138 2fzv_A Putative arsenical resi 59.8 17 0.00058 32.3 6.2 43 74-120 56-99 (279)
139 3tpc_A Short chain alcohol deh 59.2 35 0.0012 29.5 8.4 35 78-121 8-42 (257)
140 1rcu_A Conserved hypothetical 59.0 7.1 0.00024 32.6 3.4 70 359-431 110-192 (195)
141 3i6i_A Putative leucoanthocyan 59.0 9.3 0.00032 35.1 4.7 38 73-120 7-44 (346)
142 3n53_A Response regulator rece 58.9 56 0.0019 24.6 10.6 77 358-434 35-122 (140)
143 3hdv_A Response regulator; PSI 58.8 54 0.0019 24.5 10.3 105 328-434 7-127 (136)
144 3e8x_A Putative NAD-dependent 58.6 12 0.0004 32.1 5.0 36 75-120 20-55 (236)
145 3lua_A Response regulator rece 58.3 21 0.00072 27.2 6.1 77 358-434 38-127 (140)
146 2hy5_B Intracellular sulfur ox 58.2 16 0.00054 28.5 5.1 43 76-121 4-47 (136)
147 2dkn_A 3-alpha-hydroxysteroid 58.0 13 0.00045 32.1 5.3 35 77-120 1-35 (255)
148 3av3_A Phosphoribosylglycinami 58.0 27 0.00091 29.6 6.9 35 77-120 4-40 (212)
149 3guy_A Short-chain dehydrogena 58.0 9.8 0.00033 32.6 4.3 35 77-120 1-35 (230)
150 3dfu_A Uncharacterized protein 58.0 9.4 0.00032 32.9 4.1 34 74-118 4-37 (232)
151 3h1g_A Chemotaxis protein CHEY 57.9 55 0.0019 24.3 10.0 105 328-434 5-127 (129)
152 3zqu_A Probable aromatic acid 57.5 18 0.00061 30.5 5.7 38 76-120 4-41 (209)
153 2x4g_A Nucleoside-diphosphate- 57.4 14 0.00049 33.6 5.7 36 75-120 12-47 (342)
154 2bln_A Protein YFBG; transfera 57.2 36 0.0012 30.7 8.0 34 77-121 1-34 (305)
155 3eul_A Possible nitrate/nitrit 57.2 63 0.0022 24.8 10.2 77 358-434 50-135 (152)
156 2q1w_A Putative nucleotide sug 56.7 50 0.0017 29.9 9.3 34 77-120 22-55 (333)
157 3un1_A Probable oxidoreductase 56.5 48 0.0016 28.9 8.7 35 77-120 28-62 (260)
158 3of5_A Dethiobiotin synthetase 56.4 19 0.00064 30.9 5.8 39 75-117 2-40 (228)
159 3mcu_A Dipicolinate synthase, 56.2 10 0.00035 32.0 4.0 38 76-121 5-44 (207)
160 2rjn_A Response regulator rece 56.2 66 0.0023 24.7 10.4 105 328-434 7-126 (154)
161 1jkx_A GART;, phosphoribosylgl 56.1 35 0.0012 28.8 7.3 100 77-192 1-109 (212)
162 3kjh_A CO dehydrogenase/acetyl 55.7 12 0.00041 32.3 4.6 38 77-120 1-38 (254)
163 3d7l_A LIN1944 protein; APC893 55.6 15 0.0005 30.5 5.0 35 75-120 2-36 (202)
164 1sbz_A Probable aromatic acid 55.4 17 0.00057 30.4 5.1 37 77-120 1-38 (197)
165 1jbe_A Chemotaxis protein CHEY 55.3 59 0.002 23.9 9.8 104 328-433 4-124 (128)
166 3lqk_A Dipicolinate synthase s 55.2 13 0.00045 31.2 4.4 41 76-122 7-47 (201)
167 3r0j_A Possible two component 55.1 99 0.0034 26.4 10.8 67 367-433 67-140 (250)
168 4eg0_A D-alanine--D-alanine li 55.1 15 0.0005 33.4 5.2 43 74-118 11-53 (317)
169 3da8_A Probable 5'-phosphoribo 55.0 4 0.00014 34.8 1.2 40 72-120 8-48 (215)
170 2rdm_A Response regulator rece 54.7 62 0.0021 23.9 10.5 103 328-434 5-123 (132)
171 3fni_A Putative diflavin flavo 54.6 35 0.0012 27.2 6.9 40 76-120 4-43 (159)
172 2qvg_A Two component response 53.9 68 0.0023 24.1 9.5 104 328-433 7-134 (143)
173 3s5p_A Ribose 5-phosphate isom 53.8 24 0.00083 28.3 5.5 41 71-119 16-56 (166)
174 2qr3_A Two-component system re 53.7 67 0.0023 24.0 8.6 105 328-434 3-126 (140)
175 3c3m_A Response regulator rece 53.6 68 0.0023 24.1 9.7 77 358-434 36-123 (138)
176 3pdi_B Nitrogenase MOFE cofact 53.2 1.4E+02 0.0047 28.7 11.9 76 96-187 322-397 (458)
177 3qjg_A Epidermin biosynthesis 53.1 13 0.00044 30.4 3.9 39 76-121 5-43 (175)
178 1n7h_A GDP-D-mannose-4,6-dehyd 52.9 82 0.0028 29.0 10.3 28 91-121 36-63 (381)
179 3l77_A Short-chain alcohol deh 52.9 17 0.00056 31.2 5.0 34 77-119 2-35 (235)
180 4hs4_A Chromate reductase; tri 52.9 10 0.00035 31.8 3.5 42 74-119 4-46 (199)
181 1ykg_A SIR-FP, sulfite reducta 52.8 9.6 0.00033 30.8 3.2 40 75-119 8-47 (167)
182 1tvm_A PTS system, galactitol- 52.8 68 0.0023 23.8 8.3 40 75-120 20-60 (113)
183 2qxy_A Response regulator; reg 52.6 71 0.0024 24.0 8.4 76 358-434 37-121 (142)
184 1zmt_A Haloalcohol dehalogenas 52.5 11 0.00038 32.8 3.8 35 77-120 1-35 (254)
185 2fb6_A Conserved hypothetical 52.5 19 0.00064 27.1 4.5 41 76-120 7-49 (117)
186 4hb9_A Similarities with proba 52.4 8.5 0.00029 36.2 3.3 33 76-119 1-33 (412)
187 1lss_A TRK system potassium up 52.4 18 0.0006 27.7 4.7 34 75-119 3-36 (140)
188 3f6p_A Transcriptional regulat 52.3 65 0.0022 23.5 8.9 76 358-433 35-118 (120)
189 1wcv_1 SOJ, segregation protei 52.1 19 0.00065 31.4 5.3 40 75-120 4-45 (257)
190 1zgz_A Torcad operon transcrip 52.1 65 0.0022 23.4 10.1 76 358-433 35-118 (122)
191 3rqi_A Response regulator prot 51.9 54 0.0018 26.4 7.9 77 358-434 40-125 (184)
192 3bfv_A CAPA1, CAPB2, membrane 51.9 32 0.0011 30.3 6.8 42 75-120 80-121 (271)
193 4f3y_A DHPR, dihydrodipicolina 51.7 11 0.00037 33.5 3.5 60 359-420 65-129 (272)
194 3ius_A Uncharacterized conserv 51.7 13 0.00043 33.0 4.2 35 75-120 4-38 (286)
195 1ehi_A LMDDL2, D-alanine:D-lac 51.6 20 0.00069 33.5 5.7 40 75-120 2-46 (377)
196 3ea0_A ATPase, para family; al 51.6 20 0.00069 30.7 5.4 43 75-121 2-45 (245)
197 2nm0_A Probable 3-oxacyl-(acyl 51.3 79 0.0027 27.3 9.2 35 77-120 21-55 (253)
198 2xj4_A MIPZ; replication, cell 50.6 23 0.00078 31.5 5.7 40 77-120 4-43 (286)
199 3kht_A Response regulator; PSI 50.5 79 0.0027 23.9 9.8 105 328-434 5-128 (144)
200 2b4a_A BH3024; flavodoxin-like 50.5 76 0.0026 23.7 9.3 74 358-434 48-131 (138)
201 2d1p_B TUSC, hypothetical UPF0 50.5 27 0.00094 26.2 5.3 41 78-121 3-43 (119)
202 3b6i_A Flavoprotein WRBA; flav 50.3 27 0.00092 28.8 5.8 39 77-120 2-41 (198)
203 3svl_A Protein YIEF; E. coli C 50.2 6.2 0.00021 33.0 1.7 41 75-119 3-44 (193)
204 3nrb_A Formyltetrahydrofolate 50.2 1E+02 0.0036 27.3 9.8 39 75-122 87-127 (287)
205 3ko8_A NAD-dependent epimerase 49.9 20 0.00068 32.1 5.3 34 77-120 1-34 (312)
206 3vtz_A Glucose 1-dehydrogenase 49.9 83 0.0028 27.4 9.2 35 77-120 14-48 (269)
207 2ph1_A Nucleotide-binding prot 49.6 33 0.0011 29.9 6.5 41 77-121 18-58 (262)
208 3gpi_A NAD-dependent epimerase 49.5 19 0.00065 31.9 5.0 36 75-121 2-37 (286)
209 1e4e_A Vancomycin/teicoplanin 49.5 10 0.00035 34.9 3.2 44 75-120 2-45 (343)
210 2lpm_A Two-component response 49.4 17 0.00057 27.7 3.9 75 358-433 42-121 (123)
211 2r85_A PURP protein PF1517; AT 49.4 13 0.00046 33.8 4.0 33 76-120 2-34 (334)
212 3zq6_A Putative arsenical pump 49.2 29 0.00099 31.6 6.2 40 76-120 12-52 (324)
213 3k9g_A PF-32 protein; ssgcid, 49.1 26 0.00088 30.7 5.7 41 75-120 25-65 (267)
214 4egb_A DTDP-glucose 4,6-dehydr 49.1 18 0.00062 33.1 4.9 34 75-118 23-56 (346)
215 3qvo_A NMRA family protein; st 49.0 16 0.00054 31.4 4.2 37 76-121 22-59 (236)
216 2c5a_A GDP-mannose-3', 5'-epim 49.0 34 0.0012 31.8 6.8 35 76-120 29-63 (379)
217 3kcq_A Phosphoribosylglycinami 48.9 40 0.0014 28.6 6.5 37 75-120 7-45 (215)
218 3e03_A Short chain dehydrogena 48.9 84 0.0029 27.4 9.2 35 78-121 7-41 (274)
219 3to5_A CHEY homolog; alpha(5)b 48.7 89 0.003 23.9 9.6 104 328-433 12-132 (134)
220 1mb3_A Cell division response 48.6 75 0.0026 23.1 10.0 77 358-434 34-121 (124)
221 3dii_A Short-chain dehydrogena 48.5 17 0.00058 31.5 4.3 33 78-119 3-35 (247)
222 1iow_A DD-ligase, DDLB, D-ALA\ 48.5 28 0.00097 31.0 6.0 39 76-119 2-43 (306)
223 3obi_A Formyltetrahydrofolate 48.3 1.2E+02 0.0043 26.8 10.0 102 75-192 88-196 (288)
224 3l6e_A Oxidoreductase, short-c 48.2 21 0.00073 30.6 4.9 34 77-119 3-36 (235)
225 3q9l_A Septum site-determining 47.8 39 0.0014 29.1 6.8 40 77-120 2-41 (260)
226 2hna_A Protein MIOC, flavodoxi 47.7 21 0.00073 27.9 4.5 36 77-117 2-37 (147)
227 1meo_A Phosophoribosylglycinam 47.7 29 0.001 29.2 5.5 36 77-121 1-38 (209)
228 3fwz_A Inner membrane protein 47.6 25 0.00084 27.2 4.8 35 75-120 6-40 (140)
229 3fgn_A Dethiobiotin synthetase 47.5 31 0.001 30.1 5.8 40 75-118 24-63 (251)
230 2i87_A D-alanine-D-alanine lig 47.3 9.4 0.00032 35.5 2.6 45 74-120 1-45 (364)
231 1xvl_A Mn transporter, MNTC pr 47.2 73 0.0025 28.9 8.5 106 358-469 86-199 (321)
232 3pg5_A Uncharacterized protein 47.2 25 0.00087 32.6 5.5 39 77-121 1-41 (361)
233 2qv0_A Protein MRKE; structura 47.1 88 0.003 23.5 10.8 77 358-434 44-127 (143)
234 1dhr_A Dihydropteridine reduct 47.1 24 0.00081 30.3 5.1 36 76-120 6-41 (241)
235 2dtx_A Glucose 1-dehydrogenase 47.1 1.2E+02 0.0042 26.2 9.9 34 78-120 9-42 (264)
236 3l4b_C TRKA K+ channel protien 46.9 22 0.00075 30.0 4.7 33 77-120 1-33 (218)
237 3cfy_A Putative LUXO repressor 46.8 89 0.003 23.4 11.0 103 330-434 6-122 (137)
238 1bvy_F Protein (cytochrome P45 46.7 18 0.00062 30.0 4.0 40 76-120 21-60 (191)
239 1rpn_A GDP-mannose 4,6-dehydra 46.6 25 0.00084 31.9 5.4 36 75-120 13-48 (335)
240 2vzf_A NADH-dependent FMN redu 46.5 33 0.0011 28.4 5.7 40 77-120 3-44 (197)
241 2ark_A Flavodoxin; FMN, struct 46.4 35 0.0012 27.9 5.8 40 76-120 4-44 (188)
242 4id9_A Short-chain dehydrogena 46.3 20 0.00069 32.7 4.7 36 75-120 18-53 (347)
243 2vvp_A Ribose-5-phosphate isom 46.3 23 0.00079 28.4 4.3 37 75-119 2-38 (162)
244 3n0r_A Response regulator; sig 46.2 1.5E+02 0.0053 26.0 12.7 102 328-434 160-277 (286)
245 1g3q_A MIND ATPase, cell divis 45.6 46 0.0016 28.2 6.7 40 77-120 2-41 (237)
246 4e3z_A Putative oxidoreductase 45.3 25 0.00084 30.9 5.0 36 75-119 24-59 (272)
247 3r6d_A NAD-dependent epimerase 45.3 29 0.00099 29.2 5.3 35 77-120 5-40 (221)
248 3ic5_A Putative saccharopine d 45.1 35 0.0012 24.9 5.2 34 76-120 5-39 (118)
249 2pl1_A Transcriptional regulat 45.1 84 0.0029 22.6 10.8 76 358-433 33-117 (121)
250 1p2f_A Response regulator; DRR 44.9 58 0.002 27.1 7.2 76 358-433 34-116 (220)
251 2z1m_A GDP-D-mannose dehydrata 44.7 27 0.00091 31.7 5.3 35 76-120 3-37 (345)
252 1p6q_A CHEY2; chemotaxis, sign 44.6 90 0.0031 22.8 9.1 104 328-433 6-126 (129)
253 3enk_A UDP-glucose 4-epimerase 44.4 32 0.0011 31.2 5.8 35 76-120 5-39 (341)
254 3rft_A Uronate dehydrogenase; 44.3 21 0.00073 31.2 4.4 37 76-121 2-38 (267)
255 2gkg_A Response regulator homo 44.1 89 0.003 22.6 9.5 76 358-434 38-125 (127)
256 3i4f_A 3-oxoacyl-[acyl-carrier 44.0 26 0.00089 30.5 4.9 36 76-120 6-41 (264)
257 3orf_A Dihydropteridine reduct 44.0 33 0.0011 29.7 5.5 35 78-121 23-57 (251)
258 3oh8_A Nucleoside-diphosphate 43.9 30 0.001 33.9 5.7 36 76-121 147-182 (516)
259 3fkq_A NTRC-like two-domain pr 43.9 35 0.0012 31.8 6.0 42 74-119 140-181 (373)
260 1xjc_A MOBB protein homolog; s 43.8 42 0.0014 27.2 5.6 42 75-121 2-43 (169)
261 2wqk_A 5'-nucleotidase SURE; S 43.7 75 0.0026 27.6 7.6 39 78-124 3-41 (251)
262 3vps_A TUNA, NAD-dependent epi 43.5 26 0.00089 31.4 5.0 37 75-121 6-42 (321)
263 1ys7_A Transcriptional regulat 43.5 1.4E+02 0.0048 24.8 11.8 105 328-434 7-125 (233)
264 3dhn_A NAD-dependent epimerase 43.4 23 0.0008 29.8 4.4 36 77-122 5-40 (227)
265 1r5j_A Putative phosphotransac 43.3 9.1 0.00031 35.3 1.8 94 281-390 198-293 (337)
266 3ijp_A DHPR, dihydrodipicolina 43.0 13 0.00045 33.2 2.7 59 360-420 81-144 (288)
267 3i83_A 2-dehydropantoate 2-red 43.0 26 0.0009 31.8 4.9 34 76-120 2-35 (320)
268 1toa_A Tromp-1, protein (perip 43.0 1.6E+02 0.0054 26.5 10.0 107 358-470 79-193 (313)
269 3a10_A Response regulator; pho 43.0 89 0.003 22.3 10.0 75 358-432 34-115 (116)
270 2rh8_A Anthocyanidin reductase 42.9 33 0.0011 31.1 5.6 34 76-119 9-42 (338)
271 2jba_A Phosphate regulon trans 42.8 53 0.0018 24.1 6.0 67 368-434 47-122 (127)
272 1id1_A Putative potassium chan 42.8 26 0.00089 27.5 4.3 34 75-119 2-35 (153)
273 3ug7_A Arsenical pump-driving 42.8 35 0.0012 31.5 5.7 41 76-120 24-64 (349)
274 2e6c_A 5'-nucleotidase SURE; S 42.7 25 0.00085 30.5 4.3 40 77-124 1-40 (244)
275 2pn1_A Carbamoylphosphate synt 42.6 87 0.003 28.2 8.5 35 74-120 2-38 (331)
276 3cio_A ETK, tyrosine-protein k 42.5 50 0.0017 29.6 6.6 42 75-120 102-143 (299)
277 3kkl_A Probable chaperone prot 42.5 51 0.0017 28.5 6.4 44 77-120 4-52 (244)
278 3ruf_A WBGU; rossmann fold, UD 42.5 32 0.0011 31.4 5.5 37 75-121 24-60 (351)
279 3f6c_A Positive transcription 42.5 1E+02 0.0034 22.8 9.5 68 367-434 46-120 (134)
280 3qxc_A Dethiobiotin synthetase 42.4 41 0.0014 29.1 5.7 40 75-118 19-58 (242)
281 4dad_A Putative pilus assembly 42.4 55 0.0019 24.9 6.2 68 367-434 67-141 (146)
282 2ejb_A Probable aromatic acid 42.2 45 0.0016 27.5 5.7 35 78-119 3-37 (189)
283 3dfz_A SIRC, precorrin-2 dehyd 42.1 1.6E+02 0.0054 25.0 11.3 135 309-455 41-188 (223)
284 2r25_B Osmosensing histidine p 42.1 1E+02 0.0036 22.8 9.8 77 358-434 36-127 (133)
285 1t0i_A YLR011WP; FMN binding p 42.0 42 0.0015 27.4 5.7 40 77-120 1-47 (191)
286 3crn_A Response regulator rece 41.9 1E+02 0.0035 22.8 11.1 77 358-434 36-121 (132)
287 4em8_A Ribose 5-phosphate isom 41.8 41 0.0014 26.4 5.0 38 74-119 5-42 (148)
288 3m2p_A UDP-N-acetylglucosamine 41.7 30 0.001 30.9 5.1 34 76-119 2-35 (311)
289 1hyq_A MIND, cell division inh 41.7 51 0.0017 28.5 6.5 40 77-120 2-41 (263)
290 1d4a_A DT-diaphorase, quinone 41.7 43 0.0015 29.6 5.9 41 77-121 3-44 (273)
291 3r5x_A D-alanine--D-alanine li 41.6 21 0.00072 32.0 4.0 43 75-119 2-44 (307)
292 3i42_A Response regulator rece 41.5 1E+02 0.0034 22.5 8.9 105 328-434 3-122 (127)
293 3n0v_A Formyltetrahydrofolate 41.5 96 0.0033 27.5 8.1 103 74-192 88-196 (286)
294 1sqs_A Conserved hypothetical 41.4 51 0.0017 28.3 6.3 40 77-120 2-43 (242)
295 3lte_A Response regulator; str 41.3 1E+02 0.0035 22.6 9.8 105 328-434 6-125 (132)
296 1j9j_A Stationary phase surviV 41.3 27 0.00091 30.4 4.3 40 77-124 1-40 (247)
297 2b69_A UDP-glucuronate decarbo 41.2 35 0.0012 31.0 5.5 36 75-120 26-61 (343)
298 2prs_A High-affinity zinc upta 41.2 55 0.0019 29.1 6.6 107 359-470 41-172 (284)
299 2i0f_A 6,7-dimethyl-8-ribityll 41.1 1.3E+02 0.0045 23.9 7.9 67 77-171 13-80 (157)
300 3n7t_A Macrophage binding prot 41.1 58 0.002 28.2 6.5 44 77-120 10-58 (247)
301 3dff_A Teicoplanin pseudoaglyc 41.1 53 0.0018 29.0 6.4 43 75-123 6-48 (273)
302 3ged_A Short-chain dehydrogena 41.1 27 0.00091 30.4 4.3 33 78-119 3-35 (247)
303 3mm4_A Histidine kinase homolo 41.1 1.4E+02 0.0047 24.5 8.9 65 368-434 120-196 (206)
304 2hpv_A FMN-dependent NADH-azor 41.0 39 0.0013 28.1 5.4 39 77-119 2-45 (208)
305 3f2v_A General stress protein 40.9 13 0.00044 31.0 2.2 39 77-120 2-40 (192)
306 4h15_A Short chain alcohol deh 40.8 1.1E+02 0.0039 26.6 8.5 34 78-120 12-45 (261)
307 1srr_A SPO0F, sporulation resp 40.8 1E+02 0.0035 22.4 9.5 77 358-434 36-121 (124)
308 2gwr_A DNA-binding response re 40.7 1.4E+02 0.0048 25.1 9.1 68 367-434 49-122 (238)
309 3k3p_A D-alanine--D-alanine li 40.5 17 0.00059 34.1 3.3 46 73-120 34-79 (383)
310 2vns_A Metalloreductase steap3 40.5 28 0.00097 29.4 4.4 36 73-119 25-60 (215)
311 3eod_A Protein HNR; response r 40.4 1.1E+02 0.0036 22.5 9.4 105 328-434 7-126 (130)
312 3i12_A D-alanine-D-alanine lig 40.3 17 0.00059 33.7 3.3 46 74-121 1-46 (364)
313 1wma_A Carbonyl reductase [NAD 40.3 33 0.0011 29.9 5.0 35 76-119 3-38 (276)
314 2p5y_A UDP-glucose 4-epimerase 40.3 33 0.0011 30.7 5.1 32 77-118 1-32 (311)
315 2ew2_A 2-dehydropantoate 2-red 40.2 30 0.001 31.0 4.8 34 75-119 2-35 (316)
316 4fyk_A Deoxyribonucleoside 5'- 40.2 31 0.0011 27.3 4.2 71 362-434 63-142 (152)
317 1t5b_A Acyl carrier protein ph 40.1 48 0.0016 27.3 5.8 40 77-120 2-45 (201)
318 1ooe_A Dihydropteridine reduct 39.9 41 0.0014 28.6 5.4 34 78-120 4-37 (236)
319 2pk3_A GDP-6-deoxy-D-LYXO-4-he 39.8 36 0.0012 30.5 5.3 28 91-121 20-47 (321)
320 2ayx_A Sensor kinase protein R 39.7 1.8E+02 0.0061 24.9 11.3 67 368-434 174-247 (254)
321 1g63_A Epidermin modifying enz 39.6 23 0.00078 29.1 3.5 38 78-122 4-41 (181)
322 3gk3_A Acetoacetyl-COA reducta 39.6 30 0.001 30.3 4.6 36 75-119 23-58 (269)
323 1uzm_A 3-oxoacyl-[acyl-carrier 39.5 54 0.0018 28.1 6.2 34 78-120 16-49 (247)
324 2r8r_A Sensor protein; KDPD, P 39.5 76 0.0026 27.1 6.8 40 75-120 5-44 (228)
325 3sju_A Keto reductase; short-c 39.5 34 0.0012 30.2 4.9 35 76-119 23-57 (279)
326 1l5x_A SurviVal protein E; str 39.2 31 0.0011 30.6 4.4 40 77-124 1-40 (280)
327 3lou_A Formyltetrahydrofolate 39.1 1.2E+02 0.0043 26.9 8.5 103 74-192 93-201 (292)
328 3tfo_A Putative 3-oxoacyl-(acy 38.7 36 0.0012 29.8 4.9 34 77-119 4-37 (264)
329 3d3k_A Enhancer of mRNA-decapp 38.7 26 0.00088 30.8 3.9 35 78-119 87-121 (259)
330 1bg6_A N-(1-D-carboxylethyl)-L 38.5 33 0.0011 31.5 4.9 34 75-119 3-36 (359)
331 3dfi_A Pseudoaglycone deacetyl 38.5 66 0.0023 28.3 6.6 43 75-123 6-48 (270)
332 1xhf_A DYE resistance, aerobic 38.5 1.1E+02 0.0038 22.1 10.9 76 358-433 36-119 (123)
333 3rpe_A MDAB, modulator of drug 38.4 51 0.0017 28.0 5.6 45 76-120 25-70 (218)
334 3cg0_A Response regulator rece 38.2 1.2E+02 0.0041 22.5 10.1 105 328-434 9-128 (140)
335 3o1l_A Formyltetrahydrofolate 38.1 1.2E+02 0.0041 27.2 8.2 102 75-192 104-211 (302)
336 1cp2_A CP2, nitrogenase iron p 38.1 43 0.0015 29.2 5.4 40 77-121 1-40 (269)
337 3l18_A Intracellular protease 38.0 59 0.002 25.9 5.8 38 76-120 2-39 (168)
338 2gdz_A NAD+-dependent 15-hydro 37.9 40 0.0014 29.4 5.1 33 78-119 8-40 (267)
339 1vl8_A Gluconate 5-dehydrogena 37.8 41 0.0014 29.4 5.2 34 77-119 21-54 (267)
340 4b79_A PA4098, probable short- 37.7 2E+02 0.0067 24.7 10.0 35 78-121 12-46 (242)
341 2nzw_A Alpha1,3-fucosyltransfe 37.6 57 0.002 30.2 6.1 81 360-443 224-308 (371)
342 4huj_A Uncharacterized protein 37.5 40 0.0014 28.5 4.9 34 74-118 21-54 (220)
343 3la6_A Tyrosine-protein kinase 37.5 59 0.002 28.9 6.2 43 75-121 90-132 (286)
344 2afh_E Nitrogenase iron protei 37.5 50 0.0017 29.2 5.8 40 77-121 2-41 (289)
345 3lcm_A SMU.1420, putative oxid 37.4 51 0.0017 27.3 5.4 40 77-121 1-41 (196)
346 3slg_A PBGP3 protein; structur 37.1 39 0.0013 31.2 5.2 36 75-120 23-59 (372)
347 3ujp_A Mn transporter subunit; 37.0 1.1E+02 0.0037 27.5 7.9 104 358-468 72-184 (307)
348 1rkx_A CDP-glucose-4,6-dehydra 36.9 40 0.0014 30.8 5.2 36 75-120 8-43 (357)
349 1z82_A Glycerol-3-phosphate de 36.8 38 0.0013 30.9 5.0 34 75-119 13-46 (335)
350 2bka_A CC3, TAT-interacting pr 36.8 45 0.0015 28.3 5.3 35 76-120 18-54 (242)
351 3end_A Light-independent proto 36.7 67 0.0023 28.6 6.6 41 75-120 39-79 (307)
352 3hp4_A GDSL-esterase; psychrot 36.6 1.6E+02 0.0054 23.3 9.2 45 76-120 2-46 (185)
353 3d3j_A Enhancer of mRNA-decapp 36.4 29 0.00099 31.3 3.9 35 78-119 134-168 (306)
354 3ghy_A Ketopantoate reductase 36.3 30 0.001 31.6 4.2 34 75-119 2-35 (335)
355 2nwq_A Probable short-chain de 36.2 37 0.0013 29.8 4.6 33 78-119 22-54 (272)
356 3q9s_A DNA-binding response re 36.1 1.4E+02 0.0048 25.4 8.4 66 368-433 82-153 (249)
357 1kgs_A DRRD, DNA binding respo 36.0 1.8E+02 0.0062 23.9 10.7 76 358-433 35-119 (225)
358 1yxm_A Pecra, peroxisomal tran 35.8 56 0.0019 29.0 5.9 33 78-119 19-51 (303)
359 1e6u_A GDP-fucose synthetase; 35.8 27 0.00093 31.3 3.8 34 75-118 2-35 (321)
360 1sny_A Sniffer CG10964-PA; alp 35.8 39 0.0013 29.3 4.8 37 75-120 19-58 (267)
361 3osu_A 3-oxoacyl-[acyl-carrier 35.8 45 0.0015 28.6 5.1 34 77-119 4-37 (246)
362 1gsa_A Glutathione synthetase; 35.7 39 0.0013 30.2 4.8 41 77-120 2-42 (316)
363 1ks9_A KPA reductase;, 2-dehyd 35.6 45 0.0015 29.4 5.2 33 77-120 1-33 (291)
364 2hun_A 336AA long hypothetical 35.6 35 0.0012 30.9 4.5 35 75-119 2-38 (336)
365 1rtt_A Conserved hypothetical 35.5 23 0.0008 29.2 3.0 41 75-120 5-46 (193)
366 3ph3_A Ribose-5-phosphate isom 35.5 59 0.002 26.2 5.1 37 75-119 19-55 (169)
367 3dm5_A SRP54, signal recogniti 35.4 89 0.003 29.8 7.3 38 78-120 101-138 (443)
368 3cz5_A Two-component response 35.4 1.5E+02 0.005 22.6 9.9 107 328-434 5-125 (153)
369 1y1p_A ARII, aldehyde reductas 35.4 52 0.0018 29.7 5.7 35 75-119 10-44 (342)
370 1o5i_A 3-oxoacyl-(acyl carrier 35.4 46 0.0016 28.7 5.0 34 77-119 19-52 (249)
371 4g65_A TRK system potassium up 35.4 18 0.00062 34.9 2.6 122 305-433 218-366 (461)
372 3m1a_A Putative dehydrogenase; 35.3 39 0.0013 29.7 4.7 36 76-120 4-39 (281)
373 3o26_A Salutaridine reductase; 35.3 39 0.0013 30.1 4.8 36 76-120 11-46 (311)
374 3oid_A Enoyl-[acyl-carrier-pro 35.3 45 0.0015 29.0 5.0 33 77-118 4-36 (258)
375 3e5n_A D-alanine-D-alanine lig 35.2 23 0.0008 33.2 3.3 47 73-121 19-65 (386)
376 2ydy_A Methionine adenosyltran 35.0 36 0.0012 30.5 4.4 33 77-119 3-35 (315)
377 1yio_A Response regulatory pro 35.0 1.8E+02 0.0062 23.6 10.4 77 358-434 37-122 (208)
378 1udb_A Epimerase, UDP-galactos 34.9 40 0.0014 30.5 4.8 32 77-118 1-32 (338)
379 3rkr_A Short chain oxidoreduct 34.9 43 0.0015 29.1 4.8 33 78-119 30-62 (262)
380 3hr4_A Nitric oxide synthase, 34.9 1.8E+02 0.0062 24.5 8.5 41 75-121 39-79 (219)
381 3pxx_A Carveol dehydrogenase; 34.8 53 0.0018 28.8 5.5 33 78-119 11-43 (287)
382 3hn2_A 2-dehydropantoate 2-red 34.8 34 0.0012 30.9 4.2 34 76-120 2-35 (312)
383 1jzt_A Hypothetical 27.5 kDa p 34.8 28 0.00097 30.2 3.5 35 78-119 60-94 (246)
384 2ph3_A 3-oxoacyl-[acyl carrier 34.7 33 0.0011 29.3 4.0 32 77-117 1-32 (245)
385 3czc_A RMPB; alpha/beta sandwi 34.7 67 0.0023 23.6 5.1 38 76-119 18-57 (110)
386 2m1z_A LMO0427 protein; homolo 34.7 67 0.0023 23.6 4.9 40 76-121 2-44 (106)
387 4iin_A 3-ketoacyl-acyl carrier 34.6 52 0.0018 28.7 5.4 34 77-119 29-62 (271)
388 3i1j_A Oxidoreductase, short c 34.6 53 0.0018 28.0 5.4 34 77-119 14-47 (247)
389 2a35_A Hypothetical protein PA 34.4 41 0.0014 27.9 4.5 35 76-120 5-41 (215)
390 1vl0_A DTDP-4-dehydrorhamnose 34.4 32 0.0011 30.4 4.0 35 75-119 11-45 (292)
391 3iqw_A Tail-anchored protein t 34.2 54 0.0019 29.9 5.5 40 76-120 15-54 (334)
392 3ego_A Probable 2-dehydropanto 33.8 44 0.0015 30.0 4.8 33 76-120 2-34 (307)
393 3p0r_A Azoreductase; structura 33.7 62 0.0021 27.1 5.4 41 76-120 4-49 (211)
394 2cfc_A 2-(R)-hydroxypropyl-COM 33.7 50 0.0017 28.3 5.0 33 78-119 3-35 (250)
395 3c1o_A Eugenol synthase; pheny 33.6 40 0.0014 30.3 4.5 35 76-120 4-38 (321)
396 1qzu_A Hypothetical protein MD 33.6 36 0.0012 28.6 3.8 40 75-121 18-58 (206)
397 1xq6_A Unknown protein; struct 33.6 60 0.0021 27.6 5.6 35 76-120 4-40 (253)
398 1mvl_A PPC decarboxylase athal 33.6 43 0.0015 28.2 4.3 39 75-121 18-56 (209)
399 2a9o_A Response regulator; ess 33.5 1.3E+02 0.0044 21.4 10.9 77 358-434 34-118 (120)
400 2rhc_B Actinorhodin polyketide 33.3 58 0.002 28.5 5.5 33 78-119 23-55 (277)
401 1f8y_A Nucleoside 2-deoxyribos 33.2 40 0.0014 26.9 3.8 37 363-399 74-113 (157)
402 2vrn_A Protease I, DR1199; cys 33.0 85 0.0029 25.6 6.1 40 74-120 7-46 (190)
403 3b2n_A Uncharacterized protein 33.0 1.5E+02 0.005 21.9 10.4 77 358-434 38-123 (133)
404 1ek6_A UDP-galactose 4-epimera 32.8 54 0.0018 29.7 5.4 33 77-119 3-35 (348)
405 3h7a_A Short chain dehydrogena 32.7 50 0.0017 28.5 4.8 35 77-120 7-41 (252)
406 2o8n_A APOA-I binding protein; 32.7 35 0.0012 30.0 3.7 35 78-119 81-115 (265)
407 3sbx_A Putative uncharacterize 32.6 58 0.002 26.9 4.8 36 75-113 12-47 (189)
408 1sb8_A WBPP; epimerase, 4-epim 32.6 54 0.0018 29.9 5.3 36 75-120 26-61 (352)
409 3cu5_A Two component transcrip 32.6 1.6E+02 0.0053 22.1 9.5 77 358-434 38-123 (141)
410 1uay_A Type II 3-hydroxyacyl-C 32.3 49 0.0017 28.1 4.7 27 91-120 10-36 (242)
411 2g1u_A Hypothetical protein TM 32.2 60 0.002 25.4 4.9 35 75-120 18-52 (155)
412 3eod_A Protein HNR; response r 32.1 86 0.0029 23.0 5.7 34 73-116 4-37 (130)
413 2oqr_A Sensory transduction pr 31.8 1.9E+02 0.0064 24.0 8.4 77 358-434 37-121 (230)
414 2khz_A C-MYC-responsive protei 31.8 51 0.0017 26.5 4.3 34 363-398 73-109 (165)
415 1di0_A Lumazine synthase; tran 31.8 1.5E+02 0.005 23.6 6.8 66 74-171 8-76 (158)
416 3cx3_A Lipoprotein; zinc-bindi 31.6 1.5E+02 0.0051 26.1 7.9 107 358-470 50-175 (284)
417 2ekp_A 2-deoxy-D-gluconate 3-d 31.4 59 0.002 27.7 5.1 34 78-120 3-36 (239)
418 3e48_A Putative nucleoside-dip 31.3 41 0.0014 29.6 4.1 35 77-121 1-36 (289)
419 1rw7_A YDR533CP; alpha-beta sa 31.3 70 0.0024 27.5 5.5 44 77-120 4-52 (243)
420 3g17_A Similar to 2-dehydropan 31.2 30 0.001 30.9 3.2 33 76-119 2-34 (294)
421 1dcf_A ETR1 protein; beta-alph 31.2 1.6E+02 0.0054 21.7 10.0 77 358-434 40-129 (136)
422 3doj_A AT3G25530, dehydrogenas 31.2 52 0.0018 29.6 4.8 35 75-120 20-54 (310)
423 3rp8_A Flavoprotein monooxygen 31.2 30 0.001 32.4 3.4 36 74-120 21-56 (407)
424 1z7e_A Protein aRNA; rossmann 31.1 1.4E+02 0.0047 30.2 8.5 35 77-122 1-35 (660)
425 1byi_A Dethiobiotin synthase; 31.1 72 0.0025 26.7 5.5 26 91-116 11-36 (224)
426 3vot_A L-amino acid ligase, BL 31.0 1.3E+02 0.0044 28.3 7.8 38 75-123 4-41 (425)
427 1fy2_A Aspartyl dipeptidase; s 31.0 1.7E+02 0.0059 24.7 7.9 42 360-401 72-122 (229)
428 3g0o_A 3-hydroxyisobutyrate de 30.8 49 0.0017 29.6 4.6 34 75-119 6-39 (303)
429 3r6w_A FMN-dependent NADH-azor 30.8 80 0.0027 26.3 5.7 40 77-120 2-45 (212)
430 1zmo_A Halohydrin dehalogenase 30.7 39 0.0013 29.0 3.8 31 77-116 1-31 (244)
431 2c20_A UDP-glucose 4-epimerase 30.7 62 0.0021 29.0 5.3 34 77-120 2-35 (330)
432 3p19_A BFPVVD8, putative blue 30.6 56 0.0019 28.5 4.8 34 78-120 17-50 (266)
433 3ezl_A Acetoacetyl-COA reducta 30.6 63 0.0022 27.8 5.2 35 76-119 12-46 (256)
434 1mvo_A PHOP response regulator 30.6 1.6E+02 0.0055 21.6 11.3 77 358-434 36-121 (136)
435 1s8n_A Putative antiterminator 30.5 2.2E+02 0.0074 23.1 11.8 77 358-434 47-131 (205)
436 2o1e_A YCDH; alpha-beta protei 30.5 2.5E+02 0.0085 25.1 9.2 108 358-470 62-188 (312)
437 1qyc_A Phenylcoumaran benzylic 30.4 53 0.0018 29.1 4.8 35 76-120 4-38 (308)
438 3cwq_A Para family chromosome 30.3 87 0.003 26.0 5.8 38 77-120 1-38 (209)
439 2vvr_A Ribose-5-phosphate isom 30.3 55 0.0019 25.8 4.1 34 77-118 2-35 (149)
440 1qo0_D AMIR; binding protein, 30.1 1.6E+02 0.0056 23.6 7.5 67 367-434 52-125 (196)
441 3s2y_A Chromate reductase; ura 36.2 11 0.00037 31.6 0.0 40 75-119 5-46 (199)
442 1zu4_A FTSY; GTPase, signal re 30.0 1.6E+02 0.0054 26.6 7.8 41 75-120 103-143 (320)
443 3tzq_B Short-chain type dehydr 30.0 68 0.0023 28.0 5.3 35 77-120 11-45 (271)
444 3qiv_A Short-chain dehydrogena 29.8 59 0.002 27.9 4.8 34 77-119 9-42 (253)
445 2o23_A HADH2 protein; HSD17B10 29.8 65 0.0022 27.8 5.2 34 78-120 13-46 (265)
446 3fvw_A Putative NAD(P)H-depend 29.7 70 0.0024 26.3 5.0 38 77-119 3-41 (192)
447 1jay_A Coenzyme F420H2:NADP+ o 29.7 57 0.0019 27.1 4.6 33 77-119 1-33 (212)
448 1p3y_1 MRSD protein; flavoprot 29.7 37 0.0013 28.2 3.2 38 76-120 8-45 (194)
449 1gy8_A UDP-galactose 4-epimera 29.5 67 0.0023 29.8 5.5 35 76-120 2-37 (397)
450 3sxp_A ADP-L-glycero-D-mannohe 29.4 74 0.0025 29.1 5.7 36 75-120 9-46 (362)
451 1xgk_A Nitrogen metabolite rep 29.4 63 0.0022 29.6 5.1 35 76-120 5-39 (352)
452 3i42_A Response regulator rece 29.3 83 0.0028 23.0 5.1 33 75-117 2-34 (127)
453 3nq4_A 6,7-dimethyl-8-ribityll 29.3 2.1E+02 0.0073 22.6 7.7 66 74-171 10-79 (156)
454 3f1l_A Uncharacterized oxidore 29.3 78 0.0027 27.2 5.5 34 77-119 12-45 (252)
455 3k96_A Glycerol-3-phosphate de 29.3 41 0.0014 31.1 3.8 35 74-119 27-61 (356)
456 2gas_A Isoflavone reductase; N 29.3 49 0.0017 29.4 4.3 34 77-120 3-36 (307)
457 2dwc_A PH0318, 433AA long hypo 29.3 73 0.0025 30.1 5.8 36 74-120 17-52 (433)
458 1weh_A Conserved hypothetical 29.1 77 0.0026 25.6 5.0 65 358-430 88-170 (171)
459 1orr_A CDP-tyvelose-2-epimeras 29.1 55 0.0019 29.6 4.7 25 91-118 9-33 (347)
460 3luf_A Two-component system re 29.1 2.7E+02 0.0093 23.8 13.0 106 327-434 123-245 (259)
461 3hwr_A 2-dehydropantoate 2-red 29.0 56 0.0019 29.5 4.6 31 75-116 18-48 (318)
462 2d1y_A Hypothetical protein TT 28.9 71 0.0024 27.5 5.2 34 78-120 7-40 (256)
463 2ew8_A (S)-1-phenylethanol deh 28.7 69 0.0024 27.5 5.1 34 78-120 8-41 (249)
464 3imf_A Short chain dehydrogena 28.6 65 0.0022 27.8 4.9 34 77-119 6-39 (257)
465 2gk4_A Conserved hypothetical 28.6 63 0.0021 27.7 4.5 26 92-120 28-53 (232)
466 3se7_A VANA; alpha-beta struct 28.5 34 0.0012 31.4 3.1 45 75-121 2-46 (346)
467 3icc_A Putative 3-oxoacyl-(acy 28.5 78 0.0027 27.1 5.4 34 77-119 7-40 (255)
468 4imr_A 3-oxoacyl-(acyl-carrier 28.5 68 0.0023 28.1 5.0 35 77-120 33-67 (275)
469 2bll_A Protein YFBG; decarboxy 28.5 65 0.0022 29.1 5.1 34 77-120 1-35 (345)
470 1kjq_A GART 2, phosphoribosylg 28.4 73 0.0025 29.6 5.5 35 75-120 10-44 (391)
471 1t2a_A GDP-mannose 4,6 dehydra 28.3 68 0.0023 29.5 5.3 28 91-121 32-59 (375)
472 3lxy_A 4-hydroxythreonine-4-ph 28.3 1.2E+02 0.004 27.7 6.4 61 363-433 257-327 (334)
473 1qyd_A Pinoresinol-lariciresin 28.2 52 0.0018 29.3 4.3 35 76-120 4-38 (313)
474 2qyt_A 2-dehydropantoate 2-red 28.2 51 0.0017 29.5 4.2 33 75-118 7-45 (317)
475 2r6j_A Eugenol synthase 1; phe 28.2 58 0.002 29.1 4.6 33 78-120 13-45 (318)
476 3io3_A DEHA2D07832P; chaperone 28.2 80 0.0027 29.0 5.5 41 75-120 16-58 (348)
477 3rd5_A Mypaa.01249.C; ssgcid, 28.1 73 0.0025 28.1 5.2 34 78-120 17-50 (291)
478 1nff_A Putative oxidoreductase 28.0 68 0.0023 27.8 4.9 33 78-119 8-40 (260)
479 3jx9_A Putative phosphoheptose 28.0 69 0.0023 25.9 4.4 26 93-118 87-112 (170)
480 4fu0_A D-alanine--D-alanine li 27.9 32 0.0011 31.7 2.9 42 74-120 1-45 (357)
481 2zat_A Dehydrogenase/reductase 27.9 65 0.0022 27.8 4.8 33 78-119 15-47 (260)
482 1x1t_A D(-)-3-hydroxybutyrate 27.9 64 0.0022 27.9 4.7 33 78-119 5-37 (260)
483 2fwm_X 2,3-dihydro-2,3-dihydro 27.9 76 0.0026 27.2 5.2 34 78-120 8-41 (250)
484 2jah_A Clavulanic acid dehydro 27.8 70 0.0024 27.4 4.9 33 78-119 8-40 (247)
485 3kvo_A Hydroxysteroid dehydrog 27.8 3.4E+02 0.012 24.5 11.2 36 77-121 45-80 (346)
486 3f9i_A 3-oxoacyl-[acyl-carrier 27.8 73 0.0025 27.2 5.1 34 77-119 14-47 (249)
487 3hh8_A Metal ABC transporter s 27.8 1.7E+02 0.0057 26.0 7.5 91 360-452 59-164 (294)
488 1iy8_A Levodione reductase; ox 27.8 72 0.0024 27.7 5.0 33 78-119 14-46 (267)
489 2z1n_A Dehydrogenase; reductas 27.8 67 0.0023 27.8 4.8 33 78-119 8-40 (260)
490 1db3_A GDP-mannose 4,6-dehydra 27.7 57 0.002 29.9 4.6 27 91-120 9-35 (372)
491 2wsb_A Galactitol dehydrogenas 27.7 70 0.0024 27.4 4.9 33 78-119 12-44 (254)
492 2ae2_A Protein (tropinone redu 27.7 67 0.0023 27.8 4.8 33 78-119 10-42 (260)
493 2uvd_A 3-oxoacyl-(acyl-carrier 27.6 63 0.0022 27.6 4.6 32 78-118 5-36 (246)
494 2q1s_A Putative nucleotide sug 27.6 76 0.0026 29.3 5.4 35 76-120 32-67 (377)
495 1uls_A Putative 3-oxoacyl-acyl 27.6 72 0.0025 27.3 4.9 33 78-119 6-38 (245)
496 1n2s_A DTDP-4-, DTDP-glucose o 27.4 48 0.0017 29.3 3.9 33 77-120 1-33 (299)
497 1q74_A 1D-MYO-inosityl 2-aceta 27.4 1.1E+02 0.0039 27.3 6.3 41 76-122 4-44 (303)
498 3ppi_A 3-hydroxyacyl-COA dehyd 27.4 80 0.0027 27.6 5.3 33 78-119 31-63 (281)
499 4dyv_A Short-chain dehydrogena 27.2 66 0.0023 28.2 4.7 34 77-119 28-61 (272)
500 3tqt_A D-alanine--D-alanine li 27.2 40 0.0014 31.3 3.4 46 74-121 2-47 (372)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=1.4e-46 Score=368.45 Aligned_cols=362 Identities=17% Similarity=0.209 Sum_probs=286.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC----CCCCCCceEEEecCCCCccCcchhHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS----FPTYPISSLYFHLSKPTAAGYLDQSI 150 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (488)
++|||++++..||| ..||+++++.+++++| +||+|+|++....... ........+.+.... ......
T Consensus 3 ~~mkIl~v~~~~~p--~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 73 (394)
T 3okp_A 3 ASRKTLVVTNDFPP--RIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSV-----MLPTPT 73 (394)
T ss_dssp -CCCEEEEESCCTT--SCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSS-----CCSCHH
T ss_pred CCceEEEEeCccCC--ccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEccccc-----cccchh
Confidence 57999999998887 6899999999999999 6999999998765321 011233333332221 122223
Q ss_pred HHHHHHHHhcCCCCCcEEEeCCcchH-----HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHH
Q 011355 151 VWQQLQTQNSTGKPFDVIHTESVGLR-----HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKV 225 (488)
Q Consensus 151 ~~~~~~~~~~~~~~~Dvv~~~~~~~~-----~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (488)
....+....++. +||+||++..... .....+.|+++.+.|+..... .. ........+
T Consensus 74 ~~~~l~~~~~~~-~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------~~----~~~~~~~~~- 135 (394)
T 3okp_A 74 TAHAMAEIIRER-EIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGW------------SM----LPGSRQSLR- 135 (394)
T ss_dssp HHHHHHHHHHHT-TCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHH------------TT----SHHHHHHHH-
T ss_pred hHHHHHHHHHhc-CCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhh------------hh----cchhhHHHH-
Confidence 333444444333 8999999864321 122235565888999853211 00 111111111
Q ss_pred HHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCC-CcccchhhhhhhCCCCCCcEEEEEEeeecc
Q 011355 226 VEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKP-DVAMGKDFKKKFGIPENRSLVLGMAGRLVK 304 (488)
Q Consensus 226 ~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~-~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~ 304 (488)
..++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.+.+ ....+..++++++++++. ++++++|++.+
T Consensus 136 ----~~~~~~d~ii~~s~~~~~~~~~~~~~-~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~ 209 (394)
T 3okp_A 136 ----KIGTEVDVLTYISQYTLRRFKSAFGS-HPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTT-PVIACNSRLVP 209 (394)
T ss_dssp ----HHHHHCSEEEESCHHHHHHHHHHHCS-SSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTC-CEEEEESCSCG
T ss_pred ----HHHHhCCEEEEcCHHHHHHHHHhcCC-CCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCc-eEEEEEecccc
Confidence 34578999999999999999997764 579999999999998877 555667899999998876 78999999999
Q ss_pred ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh----CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCC--
Q 011355 305 DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL----GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRA-- 378 (488)
Q Consensus 305 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l----~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~-- 378 (488)
.||++.+++|+..+.+++ ++++|+|+|+|+..+.++++ .++|+|+|+++++++.++|+.||++|+||...
T Consensus 210 ~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~ 285 (394)
T 3okp_A 210 RKGQDSLIKAMPQVIAAR----PDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGG 285 (394)
T ss_dssp GGCHHHHHHHHHHHHHHS----TTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGG
T ss_pred ccCHHHHHHHHHHHHhhC----CCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccc
Confidence 999999999999999988 89999999999988777764 48999999999999999999999999999732
Q ss_pred ----CCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 011355 379 ----QGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNL 453 (488)
Q Consensus 379 ----eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~ 453 (488)
||+|++++|||++|+|||+++.++.. |++.++ +|+++++ |+++++++|.+++++ ++.++++++++++.+.++
T Consensus 286 ~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~-e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~ 362 (394)
T 3okp_A 286 GLDVEGLGIVYLEAQACGVPVIAGTSGGAP-ETVTPA-TGLVVEGSDVDKLSELLIELLDD-PIRRAAMGAAGRAHVEAE 362 (394)
T ss_dssp GTBCCSSCHHHHHHHHTTCCEEECSSTTGG-GGCCTT-TEEECCTTCHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHcCCCEEEeCCCChH-HHHhcC-CceEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998 888888 9999999 999999999999998 999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccccC
Q 011355 454 FTATKMAAAYERLFLCISNDEKN 476 (488)
Q Consensus 454 fs~~~~~~~~~~~~~~~~~~~~~ 476 (488)
|+|+.+++++.++|+++..+.+.
T Consensus 363 ~s~~~~~~~~~~~~~~~~r~~~~ 385 (394)
T 3okp_A 363 WSWEIMGERLTNILQSEPRKLAA 385 (394)
T ss_dssp TBHHHHHHHHHHHHHSCCC----
T ss_pred CCHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999998875543
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.7e-45 Score=366.00 Aligned_cols=382 Identities=18% Similarity=0.230 Sum_probs=280.6
Q ss_pred CCceEEEEEecCCCCCC-----CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC----CCCceEEEecCCCCc--
Q 011355 74 LKLLKIALFVKKWPHRS-----HAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT----YPISSLYFHLSKPTA-- 142 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~-----~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~i~~~~~~~~~-- 142 (488)
.+.|||++++..|+|.. ..||+++++.+++++|.++||+|+|++.......... .+...+.+.......
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~ 97 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLS 97 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSSCC
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCeEEEEecCCCccccc
Confidence 36699999998876632 4699999999999999999999999998753221110 222222222211100
Q ss_pred -cCcchhH-HHHHHHHHH-hcCCCCCcEEEeCCcch--H---HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChh
Q 011355 143 -AGYLDQS-IVWQQLQTQ-NSTGKPFDVIHTESVGL--R---HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQ 214 (488)
Q Consensus 143 -~~~~~~~-~~~~~~~~~-~~~~~~~Dvv~~~~~~~--~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
....... .....+... .+...+||+||+|.... . .....++| ++++.|+........ . .... ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~-~-----~~~~-~~ 169 (438)
T 3c48_A 98 KEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIP-LIHTAHTLAAVKNSY-R-----DDSD-TP 169 (438)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCC-EEEECSSCHHHHSCC----------C-CH
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCC-EEEEecCCccccccc-c-----cccC-Cc
Confidence 0111111 111222222 22221599999986321 1 11223567 999999964321100 0 0000 00
Q ss_pred HHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcc-cchhhhhhhCCCCCCc
Q 011355 215 AYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVA-MGKDFKKKFGIPENRS 293 (488)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~-~~~~~r~~~~i~~~~~ 293 (488)
....... .+...++.+|.++++|+..++.+.+.+|++..++.+||||+|.+.+.+... ....+|+++++++++
T Consensus 170 ~~~~~~~-----~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~~~~~- 243 (438)
T 3c48_A 170 ESEARRI-----CEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHT- 243 (438)
T ss_dssp HHHHHHH-----HHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTCCSSS-
T ss_pred chHHHHH-----HHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcCCCCCC-
Confidence 0111111 122456789999999999999999888998899999999999988765432 234488999998777
Q ss_pred EEEEEEeeeccccChHHHHHHHHHhHhhccCCCC--CeEEEEEeC----CCchhHHhh------hCCcEEEeCccCHHHH
Q 011355 294 LVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRR--STVFLVAGD----GPWGARYRD------LGTNVIVLGPLDQTRL 361 (488)
Q Consensus 294 ~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~--~~~l~ivG~----g~~~~~~~~------l~~~V~~~g~v~~~~l 361 (488)
++++++|++.+.||++.+++|+..+.++. | +++|+|+|+ |+..+.+++ +.++|.|+|+++++++
T Consensus 244 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~----p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 319 (438)
T 3c48_A 244 KVVAFVGRLQPFKGPQVLIKAVAALFDRD----PDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSEL 319 (438)
T ss_dssp EEEEEESCBSGGGCHHHHHHHHHHHHHHC----TTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHH
T ss_pred cEEEEEeeecccCCHHHHHHHHHHHHhhC----CCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHH
Confidence 88999999999999999999999999887 5 899999998 666555543 3478999999999999
Q ss_pred HHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHH
Q 011355 362 AMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLE 440 (488)
Q Consensus 362 ~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~ 440 (488)
.++|+.||++|+||. .||||++++|||+||+|||+++.++.. |++.++.+|+++++ |+++++++|.+++++ ++.+.
T Consensus 320 ~~~~~~adv~v~ps~-~e~~~~~~~Eama~G~PvI~~~~~~~~-e~i~~~~~g~~~~~~d~~~la~~i~~l~~~-~~~~~ 396 (438)
T 3c48_A 320 VAVYRAADIVAVPSF-NESFGLVAMEAQASGTPVIAARVGGLP-IAVAEGETGLLVDGHSPHAWADALATLLDD-DETRI 396 (438)
T ss_dssp HHHHHHCSEEEECCS-CCSSCHHHHHHHHTTCCEEEESCTTHH-HHSCBTTTEEEESSCCHHHHHHHHHHHHHC-HHHHH
T ss_pred HHHHHhCCEEEECcc-ccCCchHHHHHHHcCCCEEecCCCChh-HHhhCCCcEEECCCCCHHHHHHHHHHHHcC-HHHHH
Confidence 999999999999997 599999999999999999999999998 89999999999998 999999999999998 99999
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhccccCC
Q 011355 441 KKGLVARKRGLNLFTATKMAAAYERLFLCISNDEKNG 477 (488)
Q Consensus 441 ~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~ 477 (488)
+|++++++.+.+ |+|+.+++++.++|+++++.++.+
T Consensus 397 ~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3c48_A 397 RMGEDAVEHART-FSWAATAAQLSSLYNDAIANENVD 432 (438)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhcccC
Confidence 999999999988 999999999999999998865433
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=3.7e-46 Score=370.77 Aligned_cols=380 Identities=18% Similarity=0.176 Sum_probs=282.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC--------------------CCCCceEE
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFP--------------------TYPISSLY 134 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--------------------~~~~~~i~ 134 (488)
++|||++++..|+| ...||.++++.+|+++|+++||+|+|+++........ ..+.....
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYR 79 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEE
Confidence 57999999988877 5789999999999999999999999999776443221 12222222
Q ss_pred Eec---CCCCccC------cch---hHHHHHHHHHHh-cCCCCCcEEEeCCcchH---Hh--hhccCCcEEEeeeCCcch
Q 011355 135 FHL---SKPTAAG------YLD---QSIVWQQLQTQN-STGKPFDVIHTESVGLR---HT--RARNLTNVVVSWHGIAYE 196 (488)
Q Consensus 135 ~~~---~~~~~~~------~~~---~~~~~~~~~~~~-~~~~~~Dvv~~~~~~~~---~~--~~~~~p~~v~~~h~~~~~ 196 (488)
+.. ....... ... +......+.... .+..+||+||+|+.... .+ ...++| ++++.|+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~-~v~~~h~~~~~ 158 (439)
T 3fro_A 80 IGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIP-AVFTIHRLNKS 158 (439)
T ss_dssp EESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHHHCCC-EEEEESCCCCC
T ss_pred ecchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhccCCC-EEEEecccccc
Confidence 221 0000001 000 111111222222 11238999999974321 11 224667 99999998654
Q ss_pred hhhhhhhHhhhcC-CCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCC
Q 011355 197 TIHSDIIQELLRT-PEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPD 275 (488)
Q Consensus 197 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~ 275 (488)
............. .... .....+...++.+|.++++|+..++.....++.+..++.+||||+|.+.|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~ 229 (439)
T 3fro_A 159 KLPAFYFHEAGLSELAPY---------PDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNES 229 (439)
T ss_dssp CEEHHHHHHTTCGGGCCS---------SEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGG
T ss_pred cCchHHhCcccccccccc---------ceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcc
Confidence 3222221110000 0000 00001114456799999999999998766667888999999999999988765
Q ss_pred ------cccchhhhhhhCCCCCCcEEEEEEeeec-cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch--hHHhh-
Q 011355 276 ------VAMGKDFKKKFGIPENRSLVLGMAGRLV-KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG--ARYRD- 345 (488)
Q Consensus 276 ------~~~~~~~r~~~~i~~~~~~~i~~~Grl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~--~~~~~- 345 (488)
...+..++++++++++ ++++++|++. +.||++.+++|++.+.++... ++++|+|+|+|+.. +.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~--~~~~l~i~G~g~~~~~~~l~~~ 305 (439)
T 3fro_A 230 YLTGSRDERKKSLLSKFGMDEG--VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEF--QEMRFIIIGKGDPELEGWARSL 305 (439)
T ss_dssp GSCSCHHHHHHHHHHHHTCCSC--EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGG--GGEEEEEECCCCHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHcCCCCC--cEEEEEcccccccccHHHHHHHHHHHHhcccC--CCeEEEEEcCCChhHHHHHHHH
Confidence 2245778999998665 7899999999 999999999999999875311 48999999999865 55554
Q ss_pred ---hCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CH
Q 011355 346 ---LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QV 421 (488)
Q Consensus 346 ---l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~ 421 (488)
+++.+.+.|+++.+++.++|+.||++|+||.. ||||++++|||+||+|||+++.++.. |++.++ +|+++++ |+
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~-e~~~~~~~EAma~G~Pvi~s~~~~~~-e~~~~~-~g~~~~~~d~ 382 (439)
T 3fro_A 306 EEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPIASAVGGLR-DIITNE-TGILVKAGDP 382 (439)
T ss_dssp HHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSC-CSSCHHHHHHHHTTCEEEEESSTHHH-HHCCTT-TCEEECTTCH
T ss_pred HhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCC-CCccHHHHHHHHCCCCeEEcCCCCcc-eeEEcC-ceEEeCCCCH
Confidence 44677889999999999999999999999975 99999999999999999999999998 888776 9999999 99
Q ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhccc
Q 011355 422 ESVKKALYGIWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISNDE 474 (488)
Q Consensus 422 ~~la~~i~~ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 474 (488)
++++++|.++++ + ++.++++++++++.+ ++|||+.+++++.++|+++++++
T Consensus 383 ~~la~~i~~ll~~~-~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 383 GELANAILKALELS-RSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp HHHHHHHHHHHHHT-TTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCB
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 7 899999999999999 56999999999999999998743
No 4
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.6e-45 Score=372.15 Aligned_cols=388 Identities=16% Similarity=0.144 Sum_probs=281.5
Q ss_pred CceEEEEEecCCCCC---------CCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC-CC----------CCCCceEE
Q 011355 75 KLLKIALFVKKWPHR---------SHAGGLERHALTLHLALAKRGHELHIFTASCLNCS-FP----------TYPISSLY 134 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~---------~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~----------~~~~~~i~ 134 (488)
++|||++++..|+|. ...||+++++.+++++|.++||+|+|++....... .. ..++..+.
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 85 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVR 85 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEE
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEE
Confidence 359999999877663 25799999999999999999999999998653221 00 11222222
Q ss_pred EecCCCCc---cCcchhH-HHHHHHHHHhcCC-CCCcEEEeCCcchH-----HhhhccCCcEEEeeeCCcchhhhhhhhH
Q 011355 135 FHLSKPTA---AGYLDQS-IVWQQLQTQNSTG-KPFDVIHTESVGLR-----HTRARNLTNVVVSWHGIAYETIHSDIIQ 204 (488)
Q Consensus 135 ~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~-~~~Dvv~~~~~~~~-----~~~~~~~p~~v~~~h~~~~~~~~~~~~~ 204 (488)
+....... ...+... .....+....++. .+||+||+|..... .....++| ++++.|+........
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p-~v~~~H~~~~~~~~~---- 160 (499)
T 2r60_A 86 IPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLP-FTFTGHSLGAQKMEK---- 160 (499)
T ss_dssp ECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCC-EEEECSSCHHHHHHT----
T ss_pred ecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCc-EEEEccCcccccchh----
Confidence 22211100 0112211 1112222222221 17999999974211 11223668 999999974432111
Q ss_pred hhhcCC-CChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHH--hc-C----CCCcEEEecCCccCCCcCCCc
Q 011355 205 ELLRTP-EEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRI--YM-I----PEERVHVILNGVDEEVFKPDV 276 (488)
Q Consensus 205 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~--~g-~----~~~~i~vi~ngvd~~~~~~~~ 276 (488)
..... ..+..............+...++.+|.++++|+..++.+.+. +| + +..++.|||||+|.+.+.+..
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~ 239 (499)
T 2r60_A 161 -LNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEY 239 (499)
T ss_dssp -TCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCC
T ss_pred -hccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccc
Confidence 00000 000001111111111112255688999999999999999887 77 6 778999999999998886643
Q ss_pred c--cchhhhhhhC-----CCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCC-eEEEEEeC--CC------c-
Q 011355 277 A--MGKDFKKKFG-----IPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRS-TVFLVAGD--GP------W- 339 (488)
Q Consensus 277 ~--~~~~~r~~~~-----i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~-~~l~ivG~--g~------~- 339 (488)
. .+..+|+++| +++++ ++|+++||+.+.||++.+++|+..+.++. ++ ++++|+|+ |+ .
T Consensus 240 ~~~~~~~~r~~~~~~~~~~~~~~-~~i~~vGrl~~~Kg~~~li~a~~~l~~~~----~~~~~l~i~G~~~~~~~~y~~l~ 314 (499)
T 2r60_A 240 GDKIKAKITKYLERDLGSERMEL-PAIIASSRLDQKKNHYGLVEAYVQNKELQ----DKANLVLTLRGIENPFEDYSRAG 314 (499)
T ss_dssp CHHHHHHHHHHHHHHSCGGGTTS-CEEEECSCCCGGGCHHHHHHHHHTCHHHH----HHCEEEEEESSCSBTTTBCTTSC
T ss_pred hhhhHHHHHHHhcccccccCCCC-cEEEEeecCccccCHHHHHHHHHHHHHhC----CCceEEEEECCCCCccccccccc
Confidence 2 2356888888 77666 78899999999999999999999998765 44 68999998 43 1
Q ss_pred ------hhHHhh------hCCcEEEeCccCHHHHHHHHHhc----CEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCc
Q 011355 340 ------GARYRD------LGTNVIVLGPLDQTRLAMFYNAI----DIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASI 403 (488)
Q Consensus 340 ------~~~~~~------l~~~V~~~g~v~~~~l~~~~~~a----dv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~ 403 (488)
.+.+++ +.++|+|+|+++++++.++|+.| |++|+||. .||||++++|||+||+|||+++.++.
T Consensus 315 ~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~-~Eg~~~~~lEAma~G~PvI~s~~~g~ 393 (499)
T 2r60_A 315 QEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF-YEPFGLAPVEAMASGLPAVVTRNGGP 393 (499)
T ss_dssp HHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS-CBCCCSHHHHHHHTTCCEEEESSBHH
T ss_pred ccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc-cCCCCcHHHHHHHcCCCEEEecCCCH
Confidence 333433 34789999999999999999999 99999997 49999999999999999999999998
Q ss_pred ccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhccccC
Q 011355 404 VGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISNDEKN 476 (488)
Q Consensus 404 ~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 476 (488)
. |++.++.+|+++++ |+++++++|.+++++ ++.+++|++++++.+.++|||+.+++++.++|+++++.+..
T Consensus 394 ~-e~v~~~~~g~l~~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~~ 465 (499)
T 2r60_A 394 A-EILDGGKYGVLVDPEDPEDIARGLLKAFES-EETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDE 465 (499)
T ss_dssp H-HHTGGGTSSEEECTTCHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC---
T ss_pred H-HHhcCCceEEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Confidence 8 89999999999998 999999999999998 99999999999999999999999999999999999876543
No 5
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=5.9e-45 Score=366.79 Aligned_cols=383 Identities=16% Similarity=0.174 Sum_probs=270.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCC--CC-------------------CCCceEEE
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSF--PT-------------------YPISSLYF 135 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~-------------------~~~~~i~~ 135 (488)
|||++++..|+|....||+++++.+|+++|+++||+|+|++........ .. ....++.+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 80 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecCCeEEEEEEEecCceE
Confidence 8999999888774457999999999999999999999999976432100 00 00122222
Q ss_pred ecCC-------CC-ccCc-------c---hhHHHHHHHHHHhc---CCCCCcEEEeCCcc---hHHhhh----ccCCcEE
Q 011355 136 HLSK-------PT-AAGY-------L---DQSIVWQQLQTQNS---TGKPFDVIHTESVG---LRHTRA----RNLTNVV 187 (488)
Q Consensus 136 ~~~~-------~~-~~~~-------~---~~~~~~~~~~~~~~---~~~~~Dvv~~~~~~---~~~~~~----~~~p~~v 187 (488)
.... +. ..+. . .+......+....+ +..+||+||+|+.. +..+.+ .++| ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~p-~v 159 (485)
T 1rzu_A 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPEIP-SL 159 (485)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSSSCCCC-EE
T ss_pred EEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHHHHHHhhcccCCCC-EE
Confidence 2110 00 0000 0 11111111222221 12389999999632 222222 4567 99
Q ss_pred EeeeCCcchhhhh-hhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHH-hc--------CCC
Q 011355 188 VSWHGIAYETIHS-DIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRI-YM--------IPE 257 (488)
Q Consensus 188 ~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~-~g--------~~~ 257 (488)
++.|+..+..... ..... ...+...+.............+...++.+|.++++|+..++.+.+. +| ++.
T Consensus 160 ~t~H~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~ 238 (485)
T 1rzu_A 160 LTIHNIAFQGQFGANIFSK-LALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRA 238 (485)
T ss_dssp EEESCTTCCCEECGGGGGG-SCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTG
T ss_pred EEecCccccCCCCHHHHhh-cCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhccccCcchHHHHHhhc
Confidence 9999975432111 00000 0000000000000000000001134567999999999999998774 45 467
Q ss_pred CcEEEecCCccCCCcCCCcc-----------------cchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHh
Q 011355 258 ERVHVILNGVDEEVFKPDVA-----------------MGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLA 320 (488)
Q Consensus 258 ~~i~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~ 320 (488)
.++.+||||+|.+.|.+... .+..+++++|+++++.++++++||+.+.||++.+++|+..+.+
T Consensus 239 ~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~ 318 (485)
T 1rzu_A 239 HVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS 318 (485)
T ss_dssp GGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH
T ss_pred CCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh
Confidence 89999999999988866532 2467899999987633689999999999999999999999976
Q ss_pred hccCCCCCeEEEEEeCCCc--hhHHhh----hCCcEE-EeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC
Q 011355 321 ENDTFRRSTVFLVAGDGPW--GARYRD----LGTNVI-VLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK 393 (488)
Q Consensus 321 ~~~~~~~~~~l~ivG~g~~--~~~~~~----l~~~V~-~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~ 393 (488)
++++|+|+|+|+. .+.+++ ++++|+ +.|+ +.+++..+|+.||++|+||. .||||++++|||+||+
T Consensus 319 ------~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~~~adv~v~pS~-~E~~~~~~lEAma~G~ 390 (485)
T 1rzu_A 319 ------LGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY-NEPLSHLMQAGCDAIIIPSR-FEPCGLTQLYALRYGC 390 (485)
T ss_dssp ------TTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESC-CHHHHHHHHHHCSEEEECCS-CCSSCSHHHHHHHHTC
T ss_pred ------cCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHhcCCEEEECcc-cCCCCHHHHHHHHCCC
Confidence 5799999999863 444443 457897 7888 77788999999999999998 5999999999999999
Q ss_pred cEEEeCCCCcccceeecC---------CceeEeCC-CHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHhhhCCHHHHH
Q 011355 394 PLMATRLASIVGSVIVGT---------DMGYLFSP-QVESVKKALYGIW---ADGREVLEKKGLVARKRGLNLFTATKMA 460 (488)
Q Consensus 394 PVI~~~~~~~~~e~v~~~---------~~g~l~~~-d~~~la~~i~~ll---~~~~~~~~~~~~~a~~~~~~~fs~~~~~ 460 (488)
|||+++.||+. |++.++ .+|+++++ |+++++++|.+++ ++ ++.+++|++++++ ++|||+.++
T Consensus 391 PvI~s~~gg~~-e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~-~~~~~~~~~~~~~---~~fs~~~~~ 465 (485)
T 1rzu_A 391 IPVVARTGGLA-DTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHD-PKLWTQMQKLGMK---SDVSWEKSA 465 (485)
T ss_dssp EEEEESSHHHH-HHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHT---CCCBHHHHH
T ss_pred CEEEeCCCChh-heecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH---HhCChHHHH
Confidence 99999999998 899888 89999999 9999999999999 67 8999999999874 679999999
Q ss_pred HHHHHHHHHhhccc
Q 011355 461 AAYERLFLCISNDE 474 (488)
Q Consensus 461 ~~~~~~~~~~~~~~ 474 (488)
++|.++|++++++.
T Consensus 466 ~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 466 GLYAALYSQLISKG 479 (485)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999998865
No 6
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.3e-43 Score=357.11 Aligned_cols=382 Identities=16% Similarity=0.164 Sum_probs=267.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC--CC---------------C---CCCceEEEe
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS--FP---------------T---YPISSLYFH 136 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~~---------------~---~~~~~i~~~ 136 (488)
|||++++..|+|....||+++++.+|+++|+++||+|+|++....... .. . ....++.+.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 899999988876546799999999999999999999999997642210 00 0 001222222
Q ss_pred cC-------CCC-ccCc-------c---hhHHHHHHHHHHhcC---CCCCcEEEeCCcc---hHHhh---hccCCcEEEe
Q 011355 137 LS-------KPT-AAGY-------L---DQSIVWQQLQTQNST---GKPFDVIHTESVG---LRHTR---ARNLTNVVVS 189 (488)
Q Consensus 137 ~~-------~~~-~~~~-------~---~~~~~~~~~~~~~~~---~~~~Dvv~~~~~~---~~~~~---~~~~p~~v~~ 189 (488)
.. ... .... . .+......+....+. ..+||+||+|+.. +..+. ..++| ++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~~~~~~~~~~~p-~v~t 159 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAK-SVFT 159 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHHHHHHHTTCSSE-EEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHHHHHHhhccCCCC-EEEE
Confidence 11 110 0000 0 111112223333332 1389999999742 22222 23567 9999
Q ss_pred eeCCcchhhhh-hhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHH-hcCC--------C--
Q 011355 190 WHGIAYETIHS-DIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRI-YMIP--------E-- 257 (488)
Q Consensus 190 ~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~-~g~~--------~-- 257 (488)
.|+........ ..... ...+...+.............+...++.+|.++++|+..++.+.+. +|.+ .
T Consensus 160 ~H~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (485)
T 2qzs_A 160 VHNLAYQGMFYAHHMND-IQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHRE 238 (485)
T ss_dssp ESCTTCCCEEEGGGGGT-TTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHT
T ss_pred ecCccccCCCCHHHHHh-cCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhccccCcchHHHHHhhccC
Confidence 99975432111 00000 0000000000000000000001134567999999999999998774 5542 2
Q ss_pred CcEEEecCCccCCCcCCCcc-----------------cchhhhhhhCCCC--CCcEEEEEEeeeccccChHHHHHHHHHh
Q 011355 258 ERVHVILNGVDEEVFKPDVA-----------------MGKDFKKKFGIPE--NRSLVLGMAGRLVKDKGHPLMFEALKQL 318 (488)
Q Consensus 258 ~~i~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~--~~~~~i~~~Grl~~~Kg~~~ll~a~~~l 318 (488)
.++.+||||+|.+.|.+... .+..+++++++++ +. ++++++||+.+.||++.+++|++.+
T Consensus 239 ~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~i~~vGrl~~~Kg~~~li~a~~~l 317 (485)
T 2qzs_A 239 GRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKV-PLFAVVSRLTSQKGLDLVLEALPGL 317 (485)
T ss_dssp TCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTS-CEEEEEEEESGGGCHHHHHHHHHHH
T ss_pred CceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCC-eEEEEeccCccccCHHHHHHHHHHH
Confidence 78999999999988866532 2467899999986 44 7899999999999999999999999
Q ss_pred HhhccCCCCCeEEEEEeCCC--chhHHhh----hCCcEE-EeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHc
Q 011355 319 LAENDTFRRSTVFLVAGDGP--WGARYRD----LGTNVI-VLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLS 391 (488)
Q Consensus 319 ~~~~~~~~~~~~l~ivG~g~--~~~~~~~----l~~~V~-~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~ 391 (488)
.+ ++++|+|+|+|+ ..+.+++ ++++|. +.|+ +.+++..+|+.||++|+||. .||||++++|||+|
T Consensus 318 ~~------~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~~~adv~v~pS~-~E~~g~~~lEAma~ 389 (485)
T 2qzs_A 318 LE------QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGY-HEAFSHRIMGGADVILVPSR-FEPCGLTQLYGLKY 389 (485)
T ss_dssp HH------TTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESC-CHHHHHHHHHHCSEEEECCS-CCSSCSHHHHHHHH
T ss_pred hh------CCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCC-CHHHHHHHHHhCCEEEECCc-cCCCcHHHHHHHHC
Confidence 76 579999999986 3444443 447886 8888 77888999999999999997 59999999999999
Q ss_pred CCcEEEeCCCCcccceeecC---------CceeEeCC-CHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHhhhCCHHH
Q 011355 392 GKPLMATRLASIVGSVIVGT---------DMGYLFSP-QVESVKKALYGIW---ADGREVLEKKGLVARKRGLNLFTATK 458 (488)
Q Consensus 392 G~PVI~~~~~~~~~e~v~~~---------~~g~l~~~-d~~~la~~i~~ll---~~~~~~~~~~~~~a~~~~~~~fs~~~ 458 (488)
|+|||+++.||.. |++.++ .+|+++++ |+++++++|.+++ ++ ++.+++|++++++ ++|||+.
T Consensus 390 G~PvI~s~~gg~~-e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~-~~~~~~~~~~~~~---~~fs~~~ 464 (485)
T 2qzs_A 390 GTLPLVRRTGGLA-DTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSR-PSLWRFVQRQAMA---MDFSWQV 464 (485)
T ss_dssp TCEEEEESSHHHH-HHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHH---CCCCHHH
T ss_pred CCCEEECCCCCcc-ceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh---hcCCHHH
Confidence 9999999999998 899888 89999999 9999999999999 67 8999999999874 6799999
Q ss_pred HHHHHHHHHHHhhccc
Q 011355 459 MAAAYERLFLCISNDE 474 (488)
Q Consensus 459 ~~~~~~~~~~~~~~~~ 474 (488)
++++|.++|+++..+.
T Consensus 465 ~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 465 AAKSYRELYYRLKLEH 480 (485)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999999987644
No 7
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.6e-42 Score=341.10 Aligned_cols=356 Identities=21% Similarity=0.296 Sum_probs=267.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCC---CCceEEEecCCCCccCcchhHHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTY---PISSLYFHLSKPTAAGYLDQSIV 151 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~ 151 (488)
++|||++++..+|+ ..||.++++..++++|.+.||+|++++........... ....+.+..........+. ...
T Consensus 19 ~~MkIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (406)
T 2gek_A 19 SHMRIGMVCPYSFD--VPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFG-PAT 95 (406)
T ss_dssp --CEEEEECSSCTT--SCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CC-HHH
T ss_pred CcceEEEEeccCCC--CCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCccccccc-HHH
Confidence 57999999976654 67999999999999999999999999987654311110 0111111111100000011 111
Q ss_pred HHHHHHHhcCCCCCcEEEeCCcch---HH--hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHH
Q 011355 152 WQQLQTQNSTGKPFDVIHTESVGL---RH--TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVV 226 (488)
Q Consensus 152 ~~~~~~~~~~~~~~Dvv~~~~~~~---~~--~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
+..+....+.. +||+||++.... .. ....+.| ++.+.|+..... .......+..
T Consensus 96 ~~~l~~~l~~~-~~Dii~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~-------------------~~~~~~~~~~ 154 (406)
T 2gek_A 96 HRKVKKWIAEG-DFDVLHIHEPNAPSLSMLALQAAEGP-IVATFHTSTTKS-------------------LTLSVFQGIL 154 (406)
T ss_dssp HHHHHHHHHHH-CCSEEEEECCCSSSHHHHHHHHEESS-EEEEECCCCCSH-------------------HHHHHHHSTT
T ss_pred HHHHHHHHHhc-CCCEEEECCccchHHHHHHHHhcCCC-EEEEEcCcchhh-------------------hhHHHHHHHH
Confidence 12222222222 899999986432 11 1223567 999999853221 1111122222
Q ss_pred HHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee-ccc
Q 011355 227 EEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL-VKD 305 (488)
Q Consensus 227 ~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl-~~~ 305 (488)
. ..++.+|.++++|+..++.+.+.++ ..++ ++|||+|.+.+.+.... .++++++ ++++++|++ .+.
T Consensus 155 ~--~~~~~~d~ii~~s~~~~~~~~~~~~--~~~~-vi~~~v~~~~~~~~~~~-------~~~~~~~-~~i~~~G~~~~~~ 221 (406)
T 2gek_A 155 R--PYHEKIIGRIAVSDLARRWQMEALG--SDAV-EIPNGVDVASFADAPLL-------DGYPREG-RTVLFLGRYDEPR 221 (406)
T ss_dssp H--HHHTTCSEEEESSHHHHHHHHHHHS--SCEE-ECCCCBCHHHHHTCCCC-------TTCSCSS-CEEEEESCTTSGG
T ss_pred H--HHHhhCCEEEECCHHHHHHHHHhcC--CCcE-EecCCCChhhcCCCchh-------hhccCCC-eEEEEEeeeCccc
Confidence 2 4578999999999999999988665 4578 99999998766543321 1223344 689999999 999
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh----CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCC
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL----GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGL 381 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l----~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~ 381 (488)
||++.+++|+..+.++. ++++|+|+|+|+. +.++++ .++|+|+|+++++++.++|+.||++|+||.+.||+
T Consensus 222 Kg~~~li~a~~~l~~~~----~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~ 296 (406)
T 2gek_A 222 KGMAVLLAALPKLVARF----PDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESF 296 (406)
T ss_dssp GCHHHHHHHHHHHHTTS----TTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSS
T ss_pred cCHHHHHHHHHHHHHHC----CCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCC
Confidence 99999999999999888 8999999999987 665553 57899999999999999999999999999646999
Q ss_pred ChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHH
Q 011355 382 DHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMA 460 (488)
Q Consensus 382 ~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~ 460 (488)
|++++|||+||+|||+++.++.. |++.++.+|+++++ |+++++++|.+++++ ++.+.++++++++.+. +|+|+.++
T Consensus 297 ~~~~~Ea~a~G~PvI~~~~~~~~-e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~-~~s~~~~~ 373 (406)
T 2gek_A 297 GIVLVEAMAAGTAVVASDLDAFR-RVLADGDAGRLVPVDDADGMAAALIGILED-DQLRAGYVARASERVH-RYDWSVVS 373 (406)
T ss_dssp CHHHHHHHHHTCEEEECCCHHHH-HHHTTTTSSEECCTTCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHGG-GGBHHHHH
T ss_pred chHHHHHHHcCCCEEEecCCcHH-HHhcCCCceEEeCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHH-hCCHHHHH
Confidence 99999999999999999999988 89999999999998 999999999999998 9999999999999998 79999999
Q ss_pred HHHHHHHHHhhcccc
Q 011355 461 AAYERLFLCISNDEK 475 (488)
Q Consensus 461 ~~~~~~~~~~~~~~~ 475 (488)
+++.++|++++++..
T Consensus 374 ~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 374 AQIMRVYETVSGAGI 388 (406)
T ss_dssp HHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999987553
No 8
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=8e-43 Score=341.74 Aligned_cols=361 Identities=23% Similarity=0.317 Sum_probs=265.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCC----cc-CcchhH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPT----AA-GYLDQS 149 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~ 149 (488)
..||.-+....||. .||+++++.+++++|+++||+|++++........ ...+++.+...... .. ..+..
T Consensus 12 ~~~~~~~~~~~~p~---~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~- 85 (394)
T 2jjm_A 12 HHMKLKIGITCYPS---VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN--KVYPNIYFHEVTVNQYSVFQYPPYDL- 85 (394)
T ss_dssp ---CCEEEEECCC-----CHHHHHHHHHHHHHHHTTCEEEEECSSCC------CCCTTEEEECCCCC----CCSCCHHH-
T ss_pred hhheeeeehhcCCC---CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc--ccCCceEEEecccccccccccccccH-
Confidence 34666666666654 7999999999999999999999999986432211 11223333221110 00 11111
Q ss_pred HHHHHHHHHhcCCCCCcEEEeCCcc---hHHhhhc-----cCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHH
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTESVG---LRHTRAR-----NLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAER 221 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~~~~---~~~~~~~-----~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
.....+....++. +||+||+|+.. +..++.. ++| ++.+.|+...... . .......+.
T Consensus 86 ~~~~~l~~~l~~~-~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~---------~--~~~~~~~~~-- 150 (394)
T 2jjm_A 86 ALASKMAEVAQRE-NLDILHVHYAIPHAICAYLAKQMIGERIK-IVTTLHGTDITVL---------G--SDPSLNNLI-- 150 (394)
T ss_dssp HHHHHHHHHHHHH-TCSEEEECSSTTHHHHHHHHHHHTTTCSE-EEEECCHHHHHTT---------T--TCTTTHHHH--
T ss_pred HHHHHHHHHHHHc-CCCEEEEcchhHHHHHHHHHHHhhcCCCC-EEEEEecCccccc---------C--CCHHHHHHH--
Confidence 1222222222222 89999998632 1222221 367 9999998432110 0 011111111
Q ss_pred HHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEee
Q 011355 222 ASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR 301 (488)
Q Consensus 222 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 301 (488)
+ ..++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.+.+.. ...+++++++++++ ++++++|+
T Consensus 151 --~-----~~~~~ad~ii~~s~~~~~~~~~~~~~-~~~~~vi~ngv~~~~~~~~~--~~~~~~~~~~~~~~-~~i~~~G~ 219 (394)
T 2jjm_A 151 --R-----FGIEQSDVVTAVSHSLINETHELVKP-NKDIQTVYNFIDERVYFKRD--MTQLKKEYGISESE-KILIHISN 219 (394)
T ss_dssp --H-----HHHHHSSEEEESCHHHHHHHHHHTCC-SSCEEECCCCCCTTTCCCCC--CHHHHHHTTCC----CEEEEECC
T ss_pred --H-----HHHhhCCEEEECCHHHHHHHHHhhCC-cccEEEecCCccHHhcCCcc--hHHHHHHcCCCCCC-eEEEEeec
Confidence 1 33567999999999999999997664 57999999999998876543 36788899987666 78899999
Q ss_pred eccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh------CCcEEEeCccCHHHHHHHHHhcCEEEeCC
Q 011355 302 LVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL------GTNVIVLGPLDQTRLAMFYNAIDIFVNPT 375 (488)
Q Consensus 302 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~l~~~~~~adv~v~ps 375 (488)
+.+.||++.+++|++.+.++ ++++|+|+|+|+..+.++++ .++|.|+|+ .+++.++|+.||++|+||
T Consensus 220 ~~~~Kg~~~li~a~~~l~~~-----~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps 292 (394)
T 2jjm_A 220 FRKVKRVQDVVQAFAKIVTE-----VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMSDLMLLLS 292 (394)
T ss_dssp CCGGGTHHHHHHHHHHHHHS-----SCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTCSEEEECC
T ss_pred cccccCHHHHHHHHHHHHhh-----CCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCc--hhhHHHHHHhCCEEEecc
Confidence 99999999999999999765 36899999999877666542 478999997 569999999999999999
Q ss_pred CCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhC
Q 011355 376 LRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLF 454 (488)
Q Consensus 376 ~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~f 454 (488)
. .||+|++++|||+||+|||+++.++.. |++.++.+|+++++ |+++++++|.+++++ ++.+++|++++++.+.++|
T Consensus 293 ~-~e~~~~~~~EAma~G~PvI~~~~~~~~-e~v~~~~~g~~~~~~d~~~la~~i~~l~~~-~~~~~~~~~~~~~~~~~~~ 369 (394)
T 2jjm_A 293 E-KESFGLVLLEAMACGVPCIGTRVGGIP-EVIQHGDTGYLCEVGDTTGVADQAIQLLKD-EELHRNMGERARESVYEQF 369 (394)
T ss_dssp S-CCSCCHHHHHHHHTTCCEEEECCTTST-TTCCBTTTEEEECTTCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHS
T ss_pred c-cCCCchHHHHHHhcCCCEEEecCCChH-HHhhcCCceEEeCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhC
Confidence 7 599999999999999999999999998 89999999999999 999999999999998 9999999999999998889
Q ss_pred CHHHHHHHHHHHHHHhhccccCC
Q 011355 455 TATKMAAAYERLFLCISNDEKNG 477 (488)
Q Consensus 455 s~~~~~~~~~~~~~~~~~~~~~~ 477 (488)
+|+.+++++.++|++++++.+++
T Consensus 370 s~~~~~~~~~~~~~~~~~~~~~~ 392 (394)
T 2jjm_A 370 RSEKIVSQYETIYYDVLRDDKNG 392 (394)
T ss_dssp CHHHHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999998866543
No 9
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=7.4e-43 Score=344.22 Aligned_cols=344 Identities=15% Similarity=0.134 Sum_probs=262.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEec---CCCCccCcchhHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHL---SKPTAAGYLDQSIVWQ 153 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~ 153 (488)
|||++++..+| ..||+++++..|+++|+++ |+|++++....+.... .......... ........+......+
T Consensus 1 MkI~~v~~~~p---~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (413)
T 3oy2_A 1 MKLIIVGAHSS---VPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVH-ANIEEFDAQTAEHVRGLNEQGFYYSGLSE 75 (413)
T ss_dssp CEEEEEEECTT---CCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSC-SSSEEEEHHHHHHHTTCCSTTCCHHHHHH
T ss_pred CeEEEecCCCC---CCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccc-cccccCCccccccccccccccchHHHHHH
Confidence 89999997664 4699999999999999999 9999999876532111 1111000000 0000000122222222
Q ss_pred HHHHHhcCCCCCcEEEeCCcchH----HhhhccCC---cEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHH
Q 011355 154 QLQTQNSTGKPFDVIHTESVGLR----HTRARNLT---NVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVV 226 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~~~~~~----~~~~~~~p---~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
.+ ... +||+||+|..... .....++| ..+..+|...... .. .
T Consensus 76 ~l-~~~----~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~--~--------- 124 (413)
T 3oy2_A 76 FI-DVH----KPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNI---------------RE--N--------- 124 (413)
T ss_dssp HH-HHH----CCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSC---------------CG--G---------
T ss_pred HH-Hhc----CCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchhh---------------HH--H---------
Confidence 22 222 8999999953211 11112233 2455555432110 00 0
Q ss_pred HHhhhcCCcc--EEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCC--CCcEEEEEEeee
Q 011355 227 EEVKFFPKYA--HHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPE--NRSLVLGMAGRL 302 (488)
Q Consensus 227 ~~~~~~~~~d--~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~--~~~~~i~~~Grl 302 (488)
....++++| .++++|+..++.+.+ +|. +.++.+||||+|.+.+ ...++++++++ ++ ++++++||+
T Consensus 125 -~~~~~~~~~~~~ii~~S~~~~~~~~~-~~~-~~~~~vi~ngvd~~~~-------~~~~~~~~~~~~~~~-~~il~vGr~ 193 (413)
T 3oy2_A 125 -LWWIFSHPKVVGVMAMSKCWISDICN-YGC-KVPINIVSHFVDTKTI-------YDARKLVGLSEYNDD-VLFLNMNRN 193 (413)
T ss_dssp -GGGGGGCTTEEEEEESSTHHHHHHHH-TTC-CSCEEECCCCCCCCCC-------TTHHHHTTCGGGTTS-EEEECCSCS
T ss_pred -HHHHHhccCCceEEEcCHHHHHHHHH-cCC-CCceEEeCCCCCHHHH-------HHHHHhcCCCcccCc-eEEEEcCCC
Confidence 115678877 999999999999999 777 6899999999999877 34677788876 55 899999999
Q ss_pred ccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch------hHHhh------hCCc-------EEEeCccCHHHHHH
Q 011355 303 VKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG------ARYRD------LGTN-------VIVLGPLDQTRLAM 363 (488)
Q Consensus 303 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~------~~~~~------l~~~-------V~~~g~v~~~~l~~ 363 (488)
.+.||++.+++|+..+.++. ++++|+|+|+|+.. +.+++ +.++ |.+.|+++++++.+
T Consensus 194 ~~~Kg~~~li~a~~~l~~~~----~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~ 269 (413)
T 3oy2_A 194 TARKRLDIYVLAAARFISKY----PDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDM 269 (413)
T ss_dssp SGGGTHHHHHHHHHHHHHHC----TTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHH
T ss_pred chhcCcHHHHHHHHHHHHhC----CCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHH
Confidence 99999999999999999988 89999999998754 55544 3454 88899999999999
Q ss_pred HHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCc---------------ee--EeCC-CHHHHH
Q 011355 364 FYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDM---------------GY--LFSP-QVESVK 425 (488)
Q Consensus 364 ~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~---------------g~--l~~~-d~~~la 425 (488)
+|+.||++|+||. .||||++++|||+||+|||+++.+|.. |++.++.+ |+ ++++ |+++++
T Consensus 270 ~~~~adv~v~pS~-~E~~~~~~lEAma~G~PvI~s~~~g~~-e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la 347 (413)
T 3oy2_A 270 MYNACDVIVNCSS-GEGFGLCSAEGAVLGKPLIISAVGGAD-DYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLV 347 (413)
T ss_dssp HHHHCSEEEECCS-CCSSCHHHHHHHTTTCCEEEECCHHHH-HHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHH
T ss_pred HHHhCCEEEeCCC-cCCCCcHHHHHHHcCCCEEEcCCCChH-HHHccCcccccccccccccccccCcceeeCCCCHHHHH
Confidence 9999999999997 599999999999999999999999998 88888877 99 9998 999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhcccc
Q 011355 426 KALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISNDEK 475 (488)
Q Consensus 426 ~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 475 (488)
++| +++++ ++.+++|++++++.+.++|||+.+++++.++|++++++..
T Consensus 348 ~~i-~l~~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 348 EAF-TFFKD-EKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVES 395 (413)
T ss_dssp HHH-HHTTS-HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC---
T ss_pred HHH-HHhcC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Confidence 999 99998 9999999999999998899999999999999999988553
No 10
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=9.9e-43 Score=343.62 Aligned_cols=352 Identities=17% Similarity=0.159 Sum_probs=259.1
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCC-Cc-cCc--ch-h
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKP-TA-AGY--LD-Q 148 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~--~~-~ 148 (488)
+++|||++++.. ...||+++++.+++++|.+.||+|++++.......... ...+....... .. ... +. +
T Consensus 38 ~~~mkIl~v~~~----~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 111 (416)
T 2x6q_A 38 LKGRSFVHVNST----SFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNV--TKTFHNALQGNESLKLTEEMKELY 111 (416)
T ss_dssp TTTCEEEEEESC----SSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHH--HHHHHHHHTTCCSCCCCHHHHHHH
T ss_pred hhccEEEEEeCC----CCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhh--hcccceeecccccccccHHHHHHH
Confidence 467999999974 25799999999999999999999999987643110000 00000000000 00 000 00 1
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeCCcc---hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHH
Q 011355 149 SIVWQQLQTQNSTGKPFDVIHTESVG---LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKV 225 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Dvv~~~~~~---~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (488)
......+....+.. +||+||+|+.. +..+.....| ++++.|+..... . ......+.
T Consensus 112 ~~~~~~~~~~l~~~-~~Dvv~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~-------------~----~~~~~~~~-- 170 (416)
T 2x6q_A 112 LNVNRENSKFIDLS-SFDYVLVHDPQPAALIEFYEKKSP-WLWRCHIDLSSP-------------N----REFWEFLR-- 170 (416)
T ss_dssp HHHHHHHHHSSCGG-GSSEEEEESSTTGGGGGGSCCCSC-EEEECCSCCSSC-------------C----HHHHHHHH--
T ss_pred HHHHHHHHHHHhhc-CCCEEEEeccchhhHHHHHHhcCC-EEEEEccccCCc-------------c----HHHHHHHH--
Confidence 11112222223333 89999999743 2222233356 999999853210 0 12222222
Q ss_pred HHHhhhcCCccEEE-EcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCC---cccchhhhhhhCCCCCCcEEEEEEee
Q 011355 226 VEEVKFFPKYAHHV-ATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPD---VAMGKDFKKKFGIPENRSLVLGMAGR 301 (488)
Q Consensus 226 ~~~~~~~~~~d~ii-~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~---~~~~~~~r~~~~i~~~~~~~i~~~Gr 301 (488)
+.+.++|.++ ++|+...+ +++..++.+||||+|...+... +.....+|+++++++++ ++++++||
T Consensus 171 ----~~~~~~~~~i~~~s~~~~~------~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGr 239 (416)
T 2x6q_A 171 ----RFVEKYDRYIFHLPEYVQP------ELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEK-PIITQVSR 239 (416)
T ss_dssp ----HHHTTSSEEEESSGGGSCT------TSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTS-CEEEEECC
T ss_pred ----HHHHhCCEEEEechHHHHh------hCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCC-cEEEEEec
Confidence 3356778776 55665543 2345789999999998766432 23346788999998777 78899999
Q ss_pred eccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCc-----hhHHhh------hCCcEEEeCccC---HHHHHHHHHh
Q 011355 302 LVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPW-----GARYRD------LGTNVIVLGPLD---QTRLAMFYNA 367 (488)
Q Consensus 302 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~-----~~~~~~------l~~~V~~~g~v~---~~~l~~~~~~ 367 (488)
+.+.||++.+++|+..+.++. |+++|+|+|+|+. .+.+++ +.++|+|+|+++ ++++.++|+.
T Consensus 240 l~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ 315 (416)
T 2x6q_A 240 FDPWKGIFDVIEIYRKVKEKI----PGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA 315 (416)
T ss_dssp CCTTSCHHHHHHHHHHHHHHC----TTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhC----CCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh
Confidence 999999999999999999888 8999999999864 222222 347999999654 7899999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVAR 447 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~ 447 (488)
||++|+||. .||||++++|||+||+|||+++.++.+ |++.++.+|++++ |+++++++|.+++++ ++.+++|+++++
T Consensus 316 ad~~v~ps~-~E~~~~~~lEAma~G~PvI~~~~~g~~-e~i~~~~~g~l~~-d~~~la~~i~~ll~~-~~~~~~~~~~a~ 391 (416)
T 2x6q_A 316 SDVILQMSI-REGFGLTVTEAMWKGKPVIGRAVGGIK-FQIVDGETGFLVR-DANEAVEVVLYLLKH-PEVSKEMGAKAK 391 (416)
T ss_dssp CSEEEECCS-SCSSCHHHHHHHHTTCCEEEESCHHHH-HHCCBTTTEEEES-SHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_pred CCEEEECCC-cCCCccHHHHHHHcCCCEEEccCCCCh-hheecCCCeEEEC-CHHHHHHHHHHHHhC-HHHHHHHHHHHH
Confidence 999999997 499999999999999999999999988 8999999999999 999999999999998 999999999999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHhh
Q 011355 448 KRGLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 448 ~~~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
+.+.++|||+.+++++.++|++++
T Consensus 392 ~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 392 ERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred HHHHHHcCHHHHHHHHHHHHHHhh
Confidence 999988999999999999998765
No 11
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.3e-42 Score=337.78 Aligned_cols=359 Identities=16% Similarity=0.178 Sum_probs=261.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
|||++++..+++ .||+++++.+++++|+++||+|++++........ .+.....+.... .............+.
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~~~~l~ 73 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP--KAFELIQVPVKS--HTNHGRNAEYYAWVQ 73 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC--TTCEEEECCCCC--SSHHHHHHHHHHHHH
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCCC--CCcEEEEEccCc--ccchhhHHHHHHHHH
Confidence 899999987654 5999999999999999999999999987433221 222222221111 111111222223333
Q ss_pred HHhcCCCCCcEEEeCCcchHHhhhccCCcEEEeeeCCcchh---hhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcC
Q 011355 157 TQNSTGKPFDVIHTESVGLRHTRARNLTNVVVSWHGIAYET---IHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFP 233 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~~~~~~~~~p~~v~~~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (488)
...+.. +||+||+++..... + .....+...... .+... .. . ... ......+.+. ....+
T Consensus 74 ~~i~~~-~~Dvv~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~-~~---~--~~~-~~~~~~~~~~---~~~~~ 135 (374)
T 2iw1_A 74 NHLKEH-PADRVVGFNKMPGL------D-VYFAADVCYAEKVAQEKGFL-YR---L--TSR-YRHYAAFERA---TFEQG 135 (374)
T ss_dssp HHHHHS-CCSEEEESSCCTTC------S-EEECCSCCHHHHHHHHCCHH-HH---T--SHH-HHHHHHHHHH---HHSTT
T ss_pred HHHhcc-CCCEEEEecCCCCc------e-eeeccccccceeeeecccch-hh---h--cHH-HHHHHHHHHH---Hhhcc
Confidence 333333 89999998642211 1 111111110000 00000 00 0 000 1111222211 11124
Q ss_pred CccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcc--cchhhhhhhCCCCCCcEEEEEEeeeccccChHHH
Q 011355 234 KYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVA--MGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLM 311 (488)
Q Consensus 234 ~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~--~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~l 311 (488)
.+|.++++|+..++.+.+.+|++..++.++|||+|.+.+.+... .+..+++++++++++ ++++++|++.+.||++.+
T Consensus 136 ~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~K~~~~l 214 (374)
T 2iw1_A 136 KSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQ-NLLLQVGSDFGRKGVDRS 214 (374)
T ss_dssp CCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTC-EEEEEECSCTTTTTHHHH
T ss_pred CCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCCCCCC-eEEEEeccchhhcCHHHH
Confidence 79999999999999999988998899999999999987765432 245789999998777 889999999999999999
Q ss_pred HHHHHHhHhh-ccCCCCCeEEEEEeCCCchhHHhh----h--CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 312 FEALKQLLAE-NDTFRRSTVFLVAGDGPWGARYRD----L--GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 312 l~a~~~l~~~-~~~~~~~~~l~ivG~g~~~~~~~~----l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
++|+..+.++ . ++++|+++|+|+. +.+++ + .++|+|+|+ .+++.++|+.||++|+||. .||+|++
T Consensus 215 i~a~~~l~~~~~----~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~v~ps~-~e~~~~~ 286 (374)
T 2iw1_A 215 IEALASLPESLR----HNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSG--RNDVSELMAAADLLLHPAY-QEAAGIV 286 (374)
T ss_dssp HHHHHTSCHHHH----HTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESC--CSCHHHHHHHCSEEEECCS-CCSSCHH
T ss_pred HHHHHHhHhccC----CceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCC--cccHHHHHHhcCEEEeccc-cCCcccH
Confidence 9999998776 5 7899999999874 33332 2 479999998 5699999999999999997 5999999
Q ss_pred HHHHHHcCCcEEEeCCCCcccceeecCCceeEeC-C-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHH
Q 011355 385 VLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFS-P-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAA 462 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~-~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 462 (488)
++|||+||+|||+++.++.. +++.++.+|++++ + |+++++++|.+++++ ++.++++++++++.+.+ |+|+.++++
T Consensus 287 ~~Ea~a~G~Pvi~~~~~~~~-e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 363 (374)
T 2iw1_A 287 LLEAITAGLPVLTTAVCGYA-HYIADANCGTVIAEPFSQEQLNEVLRKALTQ-SPLRMAWAENARHYADT-QDLYSLPEK 363 (374)
T ss_dssp HHHHHHHTCCEEEETTSTTT-HHHHHHTCEEEECSSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH-SCCSCHHHH
T ss_pred HHHHHHCCCCEEEecCCCch-hhhccCCceEEeCCCCCHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHH-hhHHHHHHH
Confidence 99999999999999999998 8999999999998 7 999999999999998 99999999999999976 799999999
Q ss_pred HHHHHHHhhc
Q 011355 463 YERLFLCISN 472 (488)
Q Consensus 463 ~~~~~~~~~~ 472 (488)
+.++++..++
T Consensus 364 ~~~~l~~~l~ 373 (374)
T 2iw1_A 364 AADIITGGLD 373 (374)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHHHhhc
Confidence 9999886543
No 12
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=2.1e-41 Score=340.45 Aligned_cols=383 Identities=16% Similarity=0.165 Sum_probs=260.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC---------------------CCCceE
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT---------------------YPISSL 133 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---------------------~~~~~i 133 (488)
.+|||+++++.++|....||...++..|.++|+++||+|.|+++..+...... ....++
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 87 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV 87 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence 67999999998877667899999999999999999999999997654322110 000111
Q ss_pred EEec-CCCC------------ccC------cchhHHH---H-HHHH---HHhc---------CCCCCcEEEeCCcc---h
Q 011355 134 YFHL-SKPT------------AAG------YLDQSIV---W-QQLQ---TQNS---------TGKPFDVIHTESVG---L 175 (488)
Q Consensus 134 ~~~~-~~~~------------~~~------~~~~~~~---~-~~~~---~~~~---------~~~~~Dvv~~~~~~---~ 175 (488)
.+.. ..+. .++ ..+.... + +... .... ....+||+|+|+.. +
T Consensus 88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~ 167 (536)
T 3vue_A 88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL 167 (536)
T ss_dssp EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence 1110 0000 000 0000000 1 1111 1110 12257888898642 2
Q ss_pred HHhhh---------ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH---------HHHHHHhhhcCCccE
Q 011355 176 RHTRA---------RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA---------SKVVEEVKFFPKYAH 237 (488)
Q Consensus 176 ~~~~~---------~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~d~ 237 (488)
+.++. ..+| ++.++|+..+..............+.... ...... .........+..+|.
T Consensus 168 ~~~l~~~~~~~~~~~~~~-~V~TiHnl~~qg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~ 244 (536)
T 3vue_A 168 ASYLKNNYQPNGIYRNAK-VAFCIHNISYQGRFAFEDYPELNLSERFR--SSFDFIDGYDTPVEGRKINWMKAGILEADR 244 (536)
T ss_dssp HHHHHHHTTTTTSSTTCE-EEEEESCTTCCCEEEGGGGGGGCCCGGGH--HHHEEEETTTSTTCEEEEEHHHHHHHHCSE
T ss_pred HHHHHHhhhhhhhhcccc-eeeeecCcccccccchhhhhhcCCchhhc--chhhhhhcccccccccchhHHHHHHHhccE
Confidence 22222 2456 99999987553221100000001110000 000000 000000123457999
Q ss_pred EEEcChhhHHHHHHHhc--------CCCCcEEEecCCccCCCcCCCcc------------------cchhhhhhhCCCCC
Q 011355 238 HVATSDHCGDVLKRIYM--------IPEERVHVILNGVDEEVFKPDVA------------------MGKDFKKKFGIPEN 291 (488)
Q Consensus 238 ii~~S~~~~~~~~~~~g--------~~~~~i~vi~ngvd~~~~~~~~~------------------~~~~~r~~~~i~~~ 291 (488)
|+++|+..++.+.+.++ ....++.+|+||||.+.+.+... .+..+++++|++.+
T Consensus 245 v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d 324 (536)
T 3vue_A 245 VLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVD 324 (536)
T ss_dssp EEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCC
T ss_pred EEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCC
Confidence 99999999999877554 23568999999999998876421 23456777887643
Q ss_pred C-cEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch--hHHh----hhCCcEEEeCccCHHHHHHH
Q 011355 292 R-SLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG--ARYR----DLGTNVIVLGPLDQTRLAMF 364 (488)
Q Consensus 292 ~-~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~--~~~~----~l~~~V~~~g~v~~~~l~~~ 364 (488)
+ .++|+++||+.++||++.+++|+.++.+ .+.+++++|.|+.. ..++ .+..+|.+.+..+.+++..+
T Consensus 325 ~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~------~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 398 (536)
T 3vue_A 325 RKIPLIAFIGRLEEQKGPDVMAAAIPELMQ------EDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398 (536)
T ss_dssp TTSCEEEEECCBSGGGCHHHHHHHHHHHTT------SSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHH
T ss_pred CCCcEEEEEeeccccCChHHHHHHHHHhHh------hCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHH
Confidence 2 3789999999999999999999999976 45678888877643 2222 25589999999999999999
Q ss_pred HHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCcee----------EeCC-CHHHHHHHHHHHHh
Q 011355 365 YNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGY----------LFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 365 ~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~----------l~~~-d~~~la~~i~~ll~ 433 (488)
|+.||++|+||.+ ||||++++|||+||+|||+|++||++ |+|.++.+|+ ++++ |+++|+++|.++++
T Consensus 399 ~~~aD~~v~PS~~-E~fgl~~lEAma~G~PvI~s~~gG~~-e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 399 MAGADVLAVPSRF-EPCGLIQLQGMRYGTPCACASTGGLV-DTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp HHHCSEEEECCSC-CSSCSHHHHHHHTTCCEEECSCTHHH-HHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhheeeccccc-CCCCHHHHHHHHcCCCEEEcCCCCch-heeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHH
Confidence 9999999999975 99999999999999999999999998 9999999998 6777 89999999998876
Q ss_pred --cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 434 --DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 434 --~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
+ .+.+++|++++ +.++|||++++++|+++|+++..
T Consensus 477 ~~~-~~~~~~~~~~a---m~~~fSW~~~A~~y~~ly~~L~~ 513 (536)
T 3vue_A 477 VVG-TPAYEEMVRNC---MNQDLSWKGPAKNWENVLLGLGV 513 (536)
T ss_dssp HTT-SHHHHHHHHHH---HHSCCSSHHHHHHHHHHHHTTCC
T ss_pred hcC-cHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhhh
Confidence 4 34567777666 44679999999999999999743
No 13
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=9.5e-42 Score=353.27 Aligned_cols=379 Identities=13% Similarity=0.102 Sum_probs=268.2
Q ss_pred CCceEEEEEecCCC-------CCCCCCcHHHHHHH--------HHHHHHHCCCeEE----EEecCCCCCCCCC-------
Q 011355 74 LKLLKIALFVKKWP-------HRSHAGGLERHALT--------LHLALAKRGHELH----IFTASCLNCSFPT------- 127 (488)
Q Consensus 74 ~~~mkIl~i~~~~p-------~~~~~gG~~~~~~~--------l~~~L~~~G~~V~----v~~~~~~~~~~~~------- 127 (488)
++.|+|++++.+.. -.+..||...|+.+ |+++|+++||+|+ |+|....+.....
T Consensus 276 ~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~ 355 (816)
T 3s28_A 276 PMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLER 355 (816)
T ss_dssp CCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEE
T ss_pred CceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCccee
Confidence 35689999998653 11378999999995 6666677899886 8888754431111
Q ss_pred -C---CCceEEEecCCC--------CccCcchhHHHHH--HHHHHhc-CCCCCcEEEeCCcc-----hHHhhhccCCcEE
Q 011355 128 -Y---PISSLYFHLSKP--------TAAGYLDQSIVWQ--QLQTQNS-TGKPFDVIHTESVG-----LRHTRARNLTNVV 187 (488)
Q Consensus 128 -~---~~~~i~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~-~~~~~Dvv~~~~~~-----~~~~~~~~~p~~v 187 (488)
. +...++++.... .....+.+...+. .+..... ...+|||||+|... .......++| ++
T Consensus 356 i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~~gvP-~V 434 (816)
T 3s28_A 356 VYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVT-QC 434 (816)
T ss_dssp CTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHHHTCC-EE
T ss_pred ecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHHcCCC-EE
Confidence 1 223333332211 0112233322222 1222221 12279999999632 1222334678 99
Q ss_pred EeeeCCcchhhhhhhhHhhhcCCCChh--HHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHH---hc--------
Q 011355 188 VSWHGIAYETIHSDIIQELLRTPEEPQ--AYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRI---YM-------- 254 (488)
Q Consensus 188 ~~~h~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~---~g-------- 254 (488)
.+.|+........ ....+ ....+....+...+...++.+|.|+++|+..++.+.+. |+
T Consensus 435 ~T~Hsl~~~k~~~---------~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p 505 (816)
T 3s28_A 435 TIAHALEKTKYPD---------SDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLP 505 (816)
T ss_dssp EECSCCHHHHSTT---------TTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEET
T ss_pred EEEeccccccccc---------ccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccc
Confidence 9999864332110 00000 01122222233334456889999999999988852221 21
Q ss_pred ----------CCCCcEEEecCCccCCCcCCCcccc-----------------hhhhhhhCC--CCCCcEEEEEEeeeccc
Q 011355 255 ----------IPEERVHVILNGVDEEVFKPDVAMG-----------------KDFKKKFGI--PENRSLVLGMAGRLVKD 305 (488)
Q Consensus 255 ----------~~~~~i~vi~ngvd~~~~~~~~~~~-----------------~~~r~~~~i--~~~~~~~i~~~Grl~~~ 305 (488)
....++.|||||+|.+.|.+..... ...++.+|+ ++++ ++|+++||+.+.
T Consensus 506 ~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~-~vIl~vGRl~~~ 584 (816)
T 3s28_A 506 GLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKK-PILFTMARLDRV 584 (816)
T ss_dssp TTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTS-CEEEEECCCCTT
T ss_pred hhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCC-eEEEEEccCccc
Confidence 1223999999999999887654221 234566666 4455 789999999999
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCC-----------chhHHhh------hCCcEEEeCc----cCHHHHHHH
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGP-----------WGARYRD------LGTNVIVLGP----LDQTRLAMF 364 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~-----------~~~~~~~------l~~~V~~~g~----v~~~~l~~~ 364 (488)
||++.+++|+..+.+.. ++++|+|+|+|+ ..+.+++ +.++|.|+|+ ++.+++..+
T Consensus 585 KGid~LIeA~~~L~~~~----~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~ 660 (816)
T 3s28_A 585 KNLSGLVEWYGKNTRLR----ELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRY 660 (816)
T ss_dssp TTHHHHHHHHHHCHHHH----HHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC----CCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHH
Confidence 99999999999998887 899999999988 2333332 3489999994 446899999
Q ss_pred HH-hcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHH----hcCHHH
Q 011355 365 YN-AIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIW----ADGREV 438 (488)
Q Consensus 365 ~~-~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll----~~~~~~ 438 (488)
|+ ++|++|+||. .||||++++|||+||+|||+|+.||.. |++.++.+|+++++ |+++++++|.+++ .| ++.
T Consensus 661 ~~~aaDvfV~PS~-~EgfglvllEAMA~G~PVIasd~GG~~-EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d-~~~ 737 (816)
T 3s28_A 661 ICDTKGAFVQPAL-YEAFGLTVVEAMTCGLPTFATCKGGPA-EIIVHGKSGFHIDPYHGDQAADTLADFFTKCKED-PSH 737 (816)
T ss_dssp HHHTTCEEEECCS-CBSSCHHHHHHHHTTCCEEEESSBTHH-HHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHHC-THH
T ss_pred HHhcCeEEEECCC-ccCccHHHHHHHHcCCCEEEeCCCChH-HHHccCCcEEEeCCCCHHHHHHHHHHHHHHhccC-HHH
Confidence 98 5799999997 599999999999999999999999998 99999999999999 9999999997776 77 899
Q ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Q 011355 439 LEKKGLVARKRGLNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 439 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 470 (488)
+++|++++++.+.++|||+.+++++.++|+..
T Consensus 738 ~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 738 WDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999989999999999999999864
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=1e-40 Score=320.39 Aligned_cols=311 Identities=17% Similarity=0.185 Sum_probs=244.7
Q ss_pred CCceEEEEEecC-----------CCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCc
Q 011355 74 LKLLKIALFVKK-----------WPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTA 142 (488)
Q Consensus 74 ~~~mkIl~i~~~-----------~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~ 142 (488)
|++|||++++.. ||| ...||+++++.+++++|.++||+|++++........ ..+.+....
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p-~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~-----~~~~~~~~~--- 71 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPP-QGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR-----PGLTVVPAG--- 71 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSC-SSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----TTEEECSCC---
T ss_pred CCccEEEEEeccccccCcccccccCc-ccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----CcceeccCC---
Confidence 356999999987 344 256999999999999999999999999987643321 233332211
Q ss_pred cCcchhHHHHHHHHHHhcCCCCCcEEEeCCcchHH--hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHH
Q 011355 143 AGYLDQSIVWQQLQTQNSTGKPFDVIHTESVGLRH--TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAE 220 (488)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~--~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (488)
. .. .+....++. +||+||+|+..... ....+.| +.+.|+.....
T Consensus 72 -~---~~----~l~~~l~~~-~~Dvi~~~~~~~~~~~~~~~~~p--v~~~h~~~~~~----------------------- 117 (342)
T 2iuy_A 72 -E---PE----EIERWLRTA-DVDVVHDHSGGVIGPAGLPPGTA--FISSHHFTTRP----------------------- 117 (342)
T ss_dssp -S---HH----HHHHHHHHC-CCSEEEECSSSSSCSTTCCTTCE--EEEEECSSSBC-----------------------
T ss_pred -c---HH----HHHHHHHhc-CCCEEEECCchhhHHHHhhcCCC--EEEecCCCCCc-----------------------
Confidence 1 11 222222233 89999999744222 2223445 88899864311
Q ss_pred HHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEe
Q 011355 221 RASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAG 300 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 300 (488)
..+|.++++|+..++.+.+ ..++.+||||+|.+.+.+.... . +++ .+++++|
T Consensus 118 ------------~~~d~ii~~S~~~~~~~~~-----~~~~~vi~ngvd~~~~~~~~~~---------~-~~~-~~i~~vG 169 (342)
T 2iuy_A 118 ------------VNPVGCTYSSRAQRAHCGG-----GDDAPVIPIPVDPARYRSAADQ---------V-AKE-DFLLFMG 169 (342)
T ss_dssp ------------SCCTTEEESCHHHHHHTTC-----CTTSCBCCCCBCGGGSCCSTTC---------C-CCC-SCEEEES
T ss_pred ------------ccceEEEEcCHHHHHHHhc-----CCceEEEcCCCChhhcCccccc---------C-CCC-CEEEEEe
Confidence 1188999999999988765 5789999999998877654321 1 233 4688999
Q ss_pred eeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh----hCCcEEEeCccCHHHHHHHHHhcCEEEeCCC
Q 011355 301 RLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD----LGTNVIVLGPLDQTRLAMFYNAIDIFVNPTL 376 (488)
Q Consensus 301 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~----l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 376 (488)
|+.+.||++.+++|++.+ +++|+|+|+|+..+.+++ ++++|+|+|+++++++.++|+.||++|+||.
T Consensus 170 ~~~~~Kg~~~li~a~~~~---------~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~ 240 (342)
T 2iuy_A 170 RVSPHKGALEAAAFAHAC---------GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQ 240 (342)
T ss_dssp CCCGGGTHHHHHHHHHHH---------TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCC
T ss_pred ccccccCHHHHHHHHHhc---------CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCc
Confidence 999999999999999876 468999999987766655 4589999999999999999999999999997
Q ss_pred ---------CCCCCChHHHHHHHcCCcEEEeCCCCcccceeec--CCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011355 377 ---------RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG--TDMGYLFSPQVESVKKALYGIWADGREVLEKKGLV 445 (488)
Q Consensus 377 ---------~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~--~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~ 445 (488)
+.||||++++|||+||+|||+++.++.. |++.+ +.+|+++++|+++++++|.++++ +++
T Consensus 241 ~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~-e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~---------~~~ 310 (342)
T 2iuy_A 241 AVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLA-EIVPSVGEVVGYGTDFAPDEARRTLAGLPA---------SDE 310 (342)
T ss_dssp CCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHH-HHGGGGEEECCSSSCCCHHHHHHHHHTSCC---------HHH
T ss_pred ccccccccccccCccHHHHHHHhcCCCEEEcCCCChH-HHhcccCCCceEEcCCCHHHHHHHHHHHHH---------HHH
Confidence 2599999999999999999999999998 89988 89999998899999999999876 578
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHhhccc
Q 011355 446 ARKRGLNLFTATKMAAAYERLFLCISNDE 474 (488)
Q Consensus 446 a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 474 (488)
+++.+.++|+|+.+++++.++|+++++.+
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 311 VRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp HHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 88888888999999999999999998753
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=1.5e-39 Score=317.82 Aligned_cols=349 Identities=11% Similarity=0.025 Sum_probs=228.7
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHH
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQ 153 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 153 (488)
.++|||++++..|+|+...||. +.+.+++++|+++||+|+|++.................+..................
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~-~~v~~la~~L~~~GheV~Vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGI-STALKLFEQFDNKKFKKRIILTDATPNPKDLQSFKSFKYVMPEEDKDFALQIVPFND 122 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHH-HHHHHHHTTSCTTTCEEEEEESSCCCCHHHHGGGTTSEECCTTCCCCCSEEEEECSC
T ss_pred CCCceEEEEeCCCCccccccHH-HHHHHHHHHHHHcCCceEEEEecCCCChHHHHhhhccceeeccCCccccceeeeccc
Confidence 3679999999999874334555 568899999999999999999864211000000111111000000000000000000
Q ss_pred HHHHHhcCCCCCcEEEeCCcchHHhhh------------ccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHH
Q 011355 154 QLQTQNSTGKPFDVIHTESVGLRHTRA------------RNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAER 221 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~~~~~~~~~~------------~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
.+...... .++|+||+++........ ...+ .+...|+..... .+... . ..
T Consensus 123 ~~~~~~~~-~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-----------~~~~~--~---~~ 184 (413)
T 2x0d_A 123 RYNRTIPV-AKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNK-ILYIIQDFEPGF-----------YQWSS--Q---YV 184 (413)
T ss_dssp CTTCCEEE-CTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCC-EEEEECSCGGGG-----------SCSSH--H---HH
T ss_pred cccccccC-CCCCEEEEehHHHHHHHHHhhhhhhhhcccccCc-EEEEEeechhhc-----------CccCh--H---HH
Confidence 00000111 179999998743221111 1224 666677653321 01100 0 01
Q ss_pred HHHHHHHhhhcCCcc--EEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEE
Q 011355 222 ASKVVEEVKFFPKYA--HHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMA 299 (488)
Q Consensus 222 ~~~~~~~~~~~~~~d--~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~ 299 (488)
+. ...+..++ .++++|++.++.+.+ +|++..++.+++||+|.+.+.+.. .+ .+++ ..++++
T Consensus 185 ~~-----~~~~~~~~~~~vi~~S~~~~~~l~~-~g~~~~~~~~i~~g~d~~~~~~~~---------~~-~~~~-~~il~~ 247 (413)
T 2x0d_A 185 LA-----ESTYKYRGPQIAVFNSELLKQYFNN-KGYNFTDEYFFQPKINTTLKNYIN---------DK-RQKE-KIILVY 247 (413)
T ss_dssp HH-----HHTTSCCSCEEEEEESHHHHHHHHH-HTCCCSEEEEECCCCCHHHHTTTT---------SC-CCCC-SEEEEE
T ss_pred HH-----HHHhccCCceEEEEcCHHHHHHHHH-cCCCCCceEEeCCCcCchhhcccc---------cc-cCCC-CEEEEE
Confidence 11 13455554 589999999999998 677667899999999876443211 11 1233 467789
Q ss_pred eee-ccccChHHHHHHHHHhHhhccCCCCC---eEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCC
Q 011355 300 GRL-VKDKGHPLMFEALKQLLAENDTFRRS---TVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPT 375 (488)
Q Consensus 300 Grl-~~~Kg~~~ll~a~~~l~~~~~~~~~~---~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps 375 (488)
||+ .+.||++.+++|++.+.++. |+ ++|+++|+|+....+ .+.++|+|+|+++.+++.++|+.||++|+||
T Consensus 248 gr~~~~~Kg~~~li~A~~~l~~~~----~~~~~~~l~ivG~~~~~~~l-~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS 322 (413)
T 2x0d_A 248 GRPSVKRNAFTLIVEALKIFVQKY----DRSNEWKIISVGEKHKDIAL-GKGIHLNSLGKLTLEDYADLLKRSSIGISLM 322 (413)
T ss_dssp ECTTCGGGCHHHHHHHHHHHHHHC----TTGGGCEEEEEESCCCCEEE-ETTEEEEEEESCCHHHHHHHHHHCCEEECCC
T ss_pred ecCchhccCHHHHHHHHHHHHHhC----CCCCceEEEEEcCCchhhhc-CCcCcEEEcCCCCHHHHHHHHHhCCEEEEec
Confidence 996 68899999999999998877 64 899999998765322 2457899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhC
Q 011355 376 LRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLF 454 (488)
Q Consensus 376 ~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~f 454 (488)
. .|+||++++||||||+|||+++ +|.. |++.++.+|+++++ |+++++++|.++++| ++.+++ ++++.+ +.|
T Consensus 323 ~-~E~~g~~~lEAmA~G~PVV~~~-~g~~-e~v~~~~~G~lv~~~d~~~la~ai~~ll~~-~~~~~~---~~~~~~-~~~ 394 (413)
T 2x0d_A 323 I-SPHPSYPPLEMAHFGLRVITNK-YENK-DLSNWHSNIVSLEQLNPENIAETLVELCMS-FNNRDV---DKKESS-NMM 394 (413)
T ss_dssp S-SSSCCSHHHHHHHTTCEEEEEC-BTTB-CGGGTBTTEEEESSCSHHHHHHHHHHHHHH-TC----------CCB-SCG
T ss_pred C-CCCCCcHHHHHHhCCCcEEEeC-CCcc-hhhhcCCCEEEeCCCCHHHHHHHHHHHHcC-HHHHHH---hHHHHH-HhC
Confidence 7 5999999999999999999955 5666 88888999999999 999999999999998 666655 566666 469
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 011355 455 TATKMAAAYERLFLCISN 472 (488)
Q Consensus 455 s~~~~~~~~~~~~~~~~~ 472 (488)
+|+.+.++ .+.|+++.+
T Consensus 395 ~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 395 FYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp GGCCCC----TTHHHHHT
T ss_pred CHHHHHHH-HHHHHHHHh
Confidence 99999877 666666654
No 16
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=2.5e-33 Score=287.50 Aligned_cols=327 Identities=15% Similarity=0.138 Sum_probs=238.5
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHH--HHHCCCeEEEEecCCCCCCCCC---CCCceEEEecCCCCccCcch
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLA--LAKRGHELHIFTASCLNCSFPT---YPISSLYFHLSKPTAAGYLD 147 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~--L~~~G~~V~v~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~ 147 (488)
+.++|||++++..+ ..||+++++.++++. +.+.||+|++++.......... .... .+.... . ..
T Consensus 202 ~~~~~rI~~~~~~~----~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~-~~ 270 (568)
T 2vsy_A 202 SKGPLRVGFVSNGF----GAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS--TLHDVT----A-LG 270 (568)
T ss_dssp SSSCEEEEEEESCS----SSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS--EEEECT----T-CC
T ss_pred CCCCeEEEEECccc----ccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC--eEEECC----C-CC
Confidence 45789999999865 347899999999999 7888999999997532111000 0001 111111 1 11
Q ss_pred hHHHHHHHHHHhcCCCCCcEEEeCCcc-----hHHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 148 QSIVWQQLQTQNSTGKPFDVIHTESVG-----LRHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~Dvv~~~~~~-----~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
.. .+....++. +|||||.+... +.....+..| +++++|+..... ...
T Consensus 271 ~~----~l~~~i~~~-~~Div~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~--------- 322 (568)
T 2vsy_A 271 HL----ATAKHIRHH-GIDLLFDLRGWGGGGRPEVFALRPAP-VQVNWLAYPGTS-------------GAP--------- 322 (568)
T ss_dssp HH----HHHHHHHHT-TCSEEEECSSCTTCSSCHHHHTCCSS-EEEEESSSSSCC-------------CCT---------
T ss_pred HH----HHHHHHHhC-CCCEEEECCCCCCcchHHHHhcCCCc-eeEeeecCCccc-------------CCC---------
Confidence 11 222222222 89999975421 2223334456 778887642110 000
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
. ..+..+|.++++|+...+ |+ +++.+|||.++.....+. ......|+++|++++. ++ +++|++
T Consensus 323 --~----~~~~~~d~~i~~s~~~~~-----~~---~~i~~ipn~~~~~~~~~~-~~~~~~r~~~~~~~~~-~v-~~~g~~ 385 (568)
T 2vsy_A 323 --W----MDYVLGDAFALPPALEPF-----YS---EHVLRLQGAFQPSDTSRV-VAEPPSRTQCGLPEQG-VV-LCCFNN 385 (568)
T ss_dssp --T----CCEEEECTTTSCTTTGGG-----CS---SEEEECSSCSCCCCTTCC-CCCCCCTGGGTCCTTS-CE-EEECCC
T ss_pred --C----ceEEEECCCcCCcccccC-----Cc---ceeEcCCCcCCCCCCCCC-CCCCCCccccCCCCCC-EE-EEeCCc
Confidence 0 011246777888886543 32 789999996544321111 1224578889998766 44 489999
Q ss_pred ccccChHHHHHHHHHhHhhccCCCCCeEEEEEe-CCCchhHHhh------hC-CcEEEeCccCHHHHHHHHHhcCEEEeC
Q 011355 303 VKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG-DGPWGARYRD------LG-TNVIVLGPLDQTRLAMFYNAIDIFVNP 374 (488)
Q Consensus 303 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG-~g~~~~~~~~------l~-~~V~~~g~v~~~~l~~~~~~adv~v~p 374 (488)
.+ ||++.+++++..+.++. |+++|+|+| +|+..+.+++ +. ++|+|+|+++.+++..+|+.||++|+|
T Consensus 386 ~~-K~~~~li~a~~~l~~~~----~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~p 460 (568)
T 2vsy_A 386 SY-KLNPQSMARMLAVLREV----PDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDT 460 (568)
T ss_dssp GG-GCCHHHHHHHHHHHHHC----TTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECC
T ss_pred cc-cCCHHHHHHHHHHHHhC----CCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeC
Confidence 99 99999999999998888 899999999 8887766654 33 789999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHcCCcEEE-------eCCC-------CcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHH
Q 011355 375 TLRAQGLDHTVLEAMLSGKPLMA-------TRLA-------SIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLE 440 (488)
Q Consensus 375 s~~~eg~~~~~lEAma~G~PVI~-------~~~~-------~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~ 440 (488)
|.+ |+|++++|||+||+|||+ |+.+ |++ |++.+ |+++++++|.++++| ++.++
T Consensus 461 s~~--~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~-e~v~~---------~~~~la~~i~~l~~~-~~~~~ 527 (568)
T 2vsy_A 461 HPY--NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLD-EMNVA---------DDAAFVAKAVALASD-PAALT 527 (568)
T ss_dssp SSS--CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCG-GGBCS---------SHHHHHHHHHHHHHC-HHHHH
T ss_pred CCC--CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCCh-hhhcC---------CHHHHHHHHHHHhcC-HHHHH
Confidence 974 999999999999999999 9998 877 65533 899999999999999 99999
Q ss_pred HHHHHHHHHH--hhhCCHHHHHHHHHHHHHHhhcc
Q 011355 441 KKGLVARKRG--LNLFTATKMAAAYERLFLCISND 473 (488)
Q Consensus 441 ~~~~~a~~~~--~~~fs~~~~~~~~~~~~~~~~~~ 473 (488)
+|++++++.+ .+.|+|+.+++++.++|+++.+.
T Consensus 528 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~ 562 (568)
T 2vsy_A 528 ALHARVDVLRRASGVFHMDGFADDFGALLQALARR 562 (568)
T ss_dssp HHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998 67899999999999999998873
No 17
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=5.1e-34 Score=279.05 Aligned_cols=323 Identities=15% Similarity=0.113 Sum_probs=217.5
Q ss_pred CceEEEEEecC-CCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC--------------CCCCCCCceEEEecCC
Q 011355 75 KLLKIALFVKK-WPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC--------------SFPTYPISSLYFHLSK 139 (488)
Q Consensus 75 ~~mkIl~i~~~-~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~--------------~~~~~~~~~i~~~~~~ 139 (488)
++|||++++.. ||+ ..+|... .+++.|+++| +|+|++...... ........++.+....
T Consensus 13 ~~MkIl~is~~~~p~--~~~~~~~---~l~~~l~~~G-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~ 86 (406)
T 2hy7_A 13 RRPCYLVLSSHDFRT--PRRANIH---FITDQLALRG-TTRFFSLRYSRLSRMKGDMRLPLDDTANTVVSHNGVDCYLWR 86 (406)
T ss_dssp CCSCEEEEESSCTTS--SSCCHHH---HHHHHHHHHS-CEEEEECSCBTTHHHHTCTTGGGGGGTTSEEEETTEEEEECC
T ss_pred CCceEEEEecccCCC--hhhhhHh---HHHHHHHhCC-ceEEEEecccHHHHhhccchhhhhccCccceecCCeEEEeec
Confidence 57999999987 774 4455443 4677788899 999995432100 0000011233332211
Q ss_pred ---CCcc---CcchhH-----HHH-----HHHHHHhcCCCCCcEEEeCCcchH----HhhhccCCcEEEeeeCCcchhhh
Q 011355 140 ---PTAA---GYLDQS-----IVW-----QQLQTQNSTGKPFDVIHTESVGLR----HTRARNLTNVVVSWHGIAYETIH 199 (488)
Q Consensus 140 ---~~~~---~~~~~~-----~~~-----~~~~~~~~~~~~~Dvv~~~~~~~~----~~~~~~~p~~v~~~h~~~~~~~~ 199 (488)
.... ...... ..+ ..+.... . ++|+||.++.... .....+.| ++.+.|+.....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--~~DvIh~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~-- 160 (406)
T 2hy7_A 87 TTVHPFNTRRSWLRPVEDAMFRWYAAHPPKQLLDWM-R--ESDVIVFESGIAVAFIELAKRVNPA-AKLVYRASDGLS-- 160 (406)
T ss_dssp BSSCCCCCCCGGGHHHHHHHHHHHHHCCCHHHHHHH-H--HCSEEEEESSGGGGGHHHHHHHCTT-SEEEEEESSCHH--
T ss_pred cccCCccccchhhhccchhHHHHHHHhHHHHHHHHh-c--CCCEEEECCchHHHHHHHHHHhCCC-EEEEEeccchhh--
Confidence 0000 110000 000 1111111 1 6899996543222 22234567 888999753310
Q ss_pred hhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccc
Q 011355 200 SDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMG 279 (488)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~ 279 (488)
.. ... ....... ...++++|.++++|+..++.+.+ ++ ++.+||||+|.+.|.+....
T Consensus 161 -----~~---~~~----~~~~~~~-----~~~~~~ad~vi~~S~~~~~~~~~-~~----~i~vipngvd~~~f~~~~~~- 217 (406)
T 2hy7_A 161 -----TI---NVA----SYIEREF-----DRVAPTLDVIALVSPAMAAEVVS-RD----NVFHVGHGVDHNLDQLGDPS- 217 (406)
T ss_dssp -----HH---TCC----HHHHHHH-----HHHGGGCSEEEESCGGGGGGCSC-ST----TEEECCCCBCTTHHHHHCSC-
T ss_pred -----cc---ccc----HHHHHHH-----HHHHHhCCEEEEcCHHHHHHHHh-cC----CEEEEcCCcChHhcCccccc-
Confidence 00 000 1111111 14578999999999999988766 33 89999999998876543211
Q ss_pred hhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHH
Q 011355 280 KDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQT 359 (488)
Q Consensus 280 ~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~ 359 (488)
+.+++++++|+||+.+.||+ +..+.++. ++++|+|+|+|+ . .-..+.++|+|+|+++++
T Consensus 218 ---------~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~----~~~~l~ivG~g~-~-~~~~l~~~V~f~G~~~~~ 276 (406)
T 2hy7_A 218 ---------PYAEGIHAVAVGSMLFDPEF------FVVASKAF----PQVTFHVIGSGM-G-RHPGYGDNVIVYGEMKHA 276 (406)
T ss_dssp ---------SCCSSEEEEEECCTTBCHHH------HHHHHHHC----TTEEEEEESCSS-C-CCTTCCTTEEEECCCCHH
T ss_pred ---------ccCCCcEEEEEeccccccCH------HHHHHHhC----CCeEEEEEeCch-H-HhcCCCCCEEEcCCCCHH
Confidence 12233789999999999998 44445556 899999999987 1 111356899999999999
Q ss_pred HHHHHHHhcCEEEeCCCCCCCCChHHHHHH-------HcCCcEEEeCCCCcccceeecCCceeE-eCC-CHHHHHHHHHH
Q 011355 360 RLAMFYNAIDIFVNPTLRAQGLDHTVLEAM-------LSGKPLMATRLASIVGSVIVGTDMGYL-FSP-QVESVKKALYG 430 (488)
Q Consensus 360 ~l~~~~~~adv~v~ps~~~eg~~~~~lEAm-------a~G~PVI~~~~~~~~~e~v~~~~~g~l-~~~-d~~~la~~i~~ 430 (488)
++.++|++||++|+||. .||||++++||| +||+|||+|+. +.++.+|++ +++ |+++++++|.+
T Consensus 277 ~l~~~~~~adv~v~ps~-~E~~~~~~lEAm~Kl~eYla~G~PVIas~~-------v~~~~~G~l~v~~~d~~~la~ai~~ 348 (406)
T 2hy7_A 277 QTIGYIKHARFGIAPYA-SEQVPVYLADSSMKLLQYDFFGLPAVCPNA-------VVGPYKSRFGYTPGNADSVIAAITQ 348 (406)
T ss_dssp HHHHHHHTCSEEECCBS-CSCCCTTHHHHCHHHHHHHHHTCCEEEEGG-------GTCSCSSEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCEEEECCC-cccCchHHHHHHHHHHHHhhCCCcEEEehh-------cccCcceEEEeCCCCHHHHHHHHHH
Confidence 99999999999999997 599999999999 99999999987 455788999 999 99999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHH--HHHhhc
Q 011355 431 IWADGREVLEKKGLVARKRGLNLFTATKMAAAYERL--FLCISN 472 (488)
Q Consensus 431 ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~--~~~~~~ 472 (488)
++++ ++ + ...++|+|+.+++++.++ |+++.-
T Consensus 349 ll~~-~~---------~-~~~~~~sw~~~a~~~~~~~~y~~~~~ 381 (406)
T 2hy7_A 349 ALEA-PR---------V-RYRQCLNWSDTTDRVLDPRAYPETRL 381 (406)
T ss_dssp HHHC-CC---------C-CCSCCCBHHHHHHHHHCGGGSGGGBS
T ss_pred HHhC-cc---------h-hhhhcCCHHHHHHHHHHhhcccccCc
Confidence 9998 44 1 334679999999999999 877554
No 18
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=100.00 E-value=1.5e-33 Score=274.00 Aligned_cols=346 Identities=15% Similarity=0.093 Sum_probs=231.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-C-CeEEEEecCCCCCCCCC----CCCce-EEEecCCCCccCcch
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR-G-HELHIFTASCLNCSFPT----YPISS-LYFHLSKPTAAGYLD 147 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G-~~V~v~~~~~~~~~~~~----~~~~~-i~~~~~~~~~~~~~~ 147 (488)
++|||++++..+| ....+..++++|.++ | |+|.+++.......... .+... +.+....+.......
T Consensus 7 ~~mkIl~v~~~~~-------~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (375)
T 3beo_A 7 ERLKVMTIFGTRP-------EAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDI 79 (375)
T ss_dssp SCEEEEEEECSHH-------HHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHH
T ss_pred cCceEEEEecCcH-------HHHHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcCCCCccccccCCCcccHHHH
Confidence 4599999985321 112345788888876 4 88877765432210000 01111 111111110001111
Q ss_pred hHHHHHHHHHHhcCCCCCcEEEeCCcc---hH---HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHH
Q 011355 148 QSIVWQQLQTQNSTGKPFDVIHTESVG---LR---HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAER 221 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~Dvv~~~~~~---~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
.......+.+..++. +||+||+|+.. +. .....++| ++.+.|+.... . ....+...+.+.
T Consensus 80 ~~~~~~~l~~~l~~~-~pDvv~~~~~~~~~~~~~~~~~~~~ip-~v~~~~~~~~~---~---------~~~~~~~~~~~~ 145 (375)
T 3beo_A 80 TTRGLEGLDKVMKEA-KPDIVLVHGDTTTTFIASLAAFYNQIP-VGHVEAGLRTW---D---------KYSPYPEEMNRQ 145 (375)
T ss_dssp HHHHHHHHHHHHHHH-CCSEEEEETTSHHHHHHHHHHHHTTCC-EEEESCCCCCS---C---------TTSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEecccccc---c---------ccCCChhHhhhh
Confidence 122222333333333 89999998632 11 11234567 77776664110 0 000111111111
Q ss_pred HHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCC-ccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEe
Q 011355 222 ASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNG-VDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAG 300 (488)
Q Consensus 222 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ng-vd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 300 (488)
+ ..+.+|.++++|+..++.+.+ +|++++++.+++|| +|...+.+.......+++++ + +++++++++|
T Consensus 146 ~--------~~~~~d~ii~~s~~~~~~~~~-~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~--~-~~~~vl~~~g 213 (375)
T 3beo_A 146 L--------TGVMADLHFSPTAKSATNLQK-ENKDESRIFITGNTAIDALKTTVKETYSHPVLEKL--G-NNRLVLMTAH 213 (375)
T ss_dssp H--------HHHHCSEEEESSHHHHHHHHH-TTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT--T-TSEEEEEECC
T ss_pred H--------HhhhhheeeCCCHHHHHHHHH-cCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc--c-CCCeEEEEec
Confidence 1 123489999999999999988 78888899999999 78655543322234455555 2 3447788999
Q ss_pred eeccc-cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch---hHHhhh-C--CcEEEeCccCHHHHHHHHHhcCEEEe
Q 011355 301 RLVKD-KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG---ARYRDL-G--TNVIVLGPLDQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 301 rl~~~-Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~---~~~~~l-~--~~V~~~g~v~~~~l~~~~~~adv~v~ 373 (488)
|+.+. ||++.+++|+..+.++. |++++++ |.|+.. +.++++ . ++|+|+|+++.+++..+|+.||++|+
T Consensus 214 r~~~~~K~~~~li~a~~~l~~~~----~~~~~i~-~~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ 288 (375)
T 3beo_A 214 RRENLGEPMRNMFRAIKRLVDKH----EDVQVVY-PVHMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLT 288 (375)
T ss_dssp CGGGTTHHHHHHHHHHHHHHHHC----TTEEEEE-ECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEE
T ss_pred ccccchhHHHHHHHHHHHHHhhC----CCeEEEE-eCCCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEE
Confidence 99875 99999999999998887 8898654 666542 333333 3 79999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEEeC-CCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 011355 374 PTLRAQGLDHTVLEAMLSGKPLMATR-LASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLN 452 (488)
Q Consensus 374 ps~~~eg~~~~~lEAma~G~PVI~~~-~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~ 452 (488)
|| |.+++|||++|+|||+++ .++.+ +++.++ +|+++++|+++++++|.++++| ++.+++|+++++++. +
T Consensus 289 ~s------g~~~lEA~a~G~Pvi~~~~~~~~~-e~v~~g-~g~~v~~d~~~la~~i~~ll~~-~~~~~~~~~~~~~~~-~ 358 (375)
T 3beo_A 289 DS------GGVQEEAPSLGVPVLVLRDTTERP-EGIEAG-TLKLAGTDEETIFSLADELLSD-KEAHDKMSKASNPYG-D 358 (375)
T ss_dssp CC------HHHHHHHHHHTCCEEECSSCCSCH-HHHHTT-SEEECCSCHHHHHHHHHHHHHC-HHHHHHHCCCCCTTC-C
T ss_pred CC------CChHHHHHhcCCCEEEecCCCCCc-eeecCC-ceEEcCCCHHHHHHHHHHHHhC-hHhHhhhhhcCCCCC-C
Confidence 98 557999999999999996 48877 777766 9999977999999999999998 999999999998876 5
Q ss_pred hCCHHHHHHHHHHHHH
Q 011355 453 LFTATKMAAAYERLFL 468 (488)
Q Consensus 453 ~fs~~~~~~~~~~~~~ 468 (488)
.|+|+.+++.+.++++
T Consensus 359 ~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 359 GRASERIVEAILKHFN 374 (375)
T ss_dssp SCHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhh
Confidence 6999999999988763
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=100.00 E-value=7.4e-34 Score=277.09 Aligned_cols=352 Identities=13% Similarity=0.148 Sum_probs=239.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC-eEEEEecCCCCCCCCC----CCCce-EEEecCCCCccCcch-hH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH-ELHIFTASCLNCSFPT----YPISS-LYFHLSKPTAAGYLD-QS 149 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~----~~~~~-i~~~~~~~~~~~~~~-~~ 149 (488)
|||++++.. ..+ ...+..++++|.++|+ ++.++........... .+... ..+..... ...... ..
T Consensus 1 mkIl~v~~~------~~~-~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 72 (384)
T 1vgv_A 1 MKVLTVFGT------RPE-AIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQP-GQGLTEITC 72 (384)
T ss_dssp CEEEEEECS------HHH-HHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCST-TSCHHHHHH
T ss_pred CeEEEEecc------cHH-HHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHcCCCCCcceecCCC-CccHHHHHH
Confidence 899999852 122 2346789999999984 8877655432211000 11111 11111110 011111 12
Q ss_pred HHHHHHHHHhcCCCCCcEEEeCCc---chH---HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHH
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTESV---GLR---HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERAS 223 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~~~---~~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
.....+.+..++. +||+||+|+. .+. .....++| ++.+.|+...... ...+.... .
T Consensus 73 ~~~~~l~~~l~~~-~pDvv~~~~~~~~~~~~~~~a~~~~ip-~v~~~~~~~~~~~------------~~~~~~~~----~ 134 (384)
T 1vgv_A 73 RILEGLKPILAEF-KPDVVLVHGDTTTTLATSLAAFYQRIP-VGHVEAGLRTGDL------------YSPWPEEA----N 134 (384)
T ss_dssp HHHHHHHHHHHHH-CCSEEEEETTCHHHHHHHHHHHTTTCC-EEEESCCCCCSCT------------TSSTTHHH----H
T ss_pred HHHHHHHHHHHHh-CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEecccccccc------------cCCCchHh----h
Confidence 2223333333333 8999999853 122 12234567 8888887531100 00010111 1
Q ss_pred HHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCc-cCCCcCCCc-----ccchhhhhhhC-CCCCCcEEE
Q 011355 224 KVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGV-DEEVFKPDV-----AMGKDFKKKFG-IPENRSLVL 296 (488)
Q Consensus 224 ~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngv-d~~~~~~~~-----~~~~~~r~~~~-i~~~~~~~i 296 (488)
+. ...+.+|.++++|+..++.+.+ +|++++++.+++||+ |...+.... ..+..+++++| +++++++++
T Consensus 135 ~~----~~~~~~d~ii~~s~~~~~~l~~-~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 209 (384)
T 1vgv_A 135 RT----LTGHLAMYHFSPTETSRQNLLR-ENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMIL 209 (384)
T ss_dssp HH----HHHTTCSEEEESSHHHHHHHHH-TTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEE
T ss_pred HH----HHHhhccEEEcCcHHHHHHHHH-cCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEE
Confidence 11 1135699999999999999987 798888999999995 432221110 01125677888 766565788
Q ss_pred EEEeeeccc-cChHHHHHHHHHhHhhccCCCCCeEEEEE-eCCC-chhHHhhh---CCcEEEeCccCHHHHHHHHHhcCE
Q 011355 297 GMAGRLVKD-KGHPLMFEALKQLLAENDTFRRSTVFLVA-GDGP-WGARYRDL---GTNVIVLGPLDQTRLAMFYNAIDI 370 (488)
Q Consensus 297 ~~~Grl~~~-Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-G~g~-~~~~~~~l---~~~V~~~g~v~~~~l~~~~~~adv 370 (488)
+++||+.+. ||++.+++|+..+.++. |+++++++ |.++ ..+.++++ .++|+|+|+++.+++.++|+.||+
T Consensus 210 ~~~gr~~~~~kg~~~li~a~~~l~~~~----~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 285 (384)
T 1vgv_A 210 VTGHRRESFGRGFEEICHALADIATTH----QDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWL 285 (384)
T ss_dssp EECCCBSSCCHHHHHHHHHHHHHHHHC----TTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSE
T ss_pred EEeCCccccchHHHHHHHHHHHHHhhC----CCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCcE
Confidence 899999876 99999999999998888 89999886 5443 34455443 268999999988999999999999
Q ss_pred EEeCCCCCCCCChHHHHHHHcCCcEEEeCC-CCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011355 371 FVNPTLRAQGLDHTVLEAMLSGKPLMATRL-ASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKR 449 (488)
Q Consensus 371 ~v~ps~~~eg~~~~~lEAma~G~PVI~~~~-~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~ 449 (488)
+|+|| |.+++|||++|+|||+++. ++.. +++.++ +|+++++|+++++++|.++++| ++.+++|+++++++
T Consensus 286 ~v~~S------g~~~lEA~a~G~PvI~~~~~~~~~-e~v~~g-~g~lv~~d~~~la~~i~~ll~d-~~~~~~~~~~~~~~ 356 (384)
T 1vgv_A 286 ILTDS------GGIQEEAPSLGKPVLVMRDTTERP-EAVTAG-TVRLVGTDKQRIVEEVTRLLKD-ENEYQAMSRAHNPY 356 (384)
T ss_dssp EEESS------STGGGTGGGGTCCEEEESSCCSCH-HHHHHT-SEEEECSSHHHHHHHHHHHHHC-HHHHHHHHSSCCTT
T ss_pred EEECC------cchHHHHHHcCCCEEEccCCCCcc-hhhhCC-ceEEeCCCHHHHHHHHHHHHhC-hHHHhhhhhccCCC
Confidence 99998 2348999999999999987 7876 777777 9999977999999999999998 99999999999887
Q ss_pred HhhhCCHHHHHHHHHHHHHHhhcc
Q 011355 450 GLNLFTATKMAAAYERLFLCISND 473 (488)
Q Consensus 450 ~~~~fs~~~~~~~~~~~~~~~~~~ 473 (488)
. +.|+|+.+++.+.++|++..+.
T Consensus 357 ~-~~~~~~~i~~~~~~~~~~~~~~ 379 (384)
T 1vgv_A 357 G-DGQACSRILEALKNNRISLGSH 379 (384)
T ss_dssp C-CSCHHHHHHHHHHHTCCCC---
T ss_pred c-CCCHHHHHHHHHHHHHHhhccc
Confidence 6 5699999999999988877663
No 20
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=2e-32 Score=264.87 Aligned_cols=326 Identities=17% Similarity=0.127 Sum_probs=227.8
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCC--CCCCCceEEEecCCCCccC-------cc
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSF--PTYPISSLYFHLSKPTAAG-------YL 146 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~-------~~ 146 (488)
+|||++++. ..||.+..+..++++|.++||+|++++........ ...+.+...+......... ..
T Consensus 6 ~mkIl~~~~------~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (364)
T 1f0k_A 6 GKRLMVMAG------GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPL 79 (364)
T ss_dssp -CEEEEECC------SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHH
T ss_pred CcEEEEEeC------CCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccCCceEEecCCccCcCccHHHHHHHH
Confidence 489999984 45799999999999999999999999986532110 0012222222111100000 11
Q ss_pred hhHHHHHHHHHHhcCCCCCcEEEeCCcc--hHH---hhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHH
Q 011355 147 DQSIVWQQLQTQNSTGKPFDVIHTESVG--LRH---TRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAER 221 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
.....+..+....++. +||+||+++.. ... ....++| ++.+.|+.... .
T Consensus 80 ~~~~~~~~l~~~l~~~-~pDvv~~~~~~~~~~~~~~~~~~~~p-~v~~~~~~~~~--------------------~---- 133 (364)
T 1f0k_A 80 RIFNAWRQARAIMKAY-KPDVVLGMGGYVSGPGGLAAWSLGIP-VVLHEQNGIAG--------------------L---- 133 (364)
T ss_dssp HHHHHHHHHHHHHHHH-CCSEEEECSSTTHHHHHHHHHHTTCC-EEEEECSSSCC--------------------H----
T ss_pred HHHHHHHHHHHHHHhc-CCCEEEEeCCcCchHHHHHHHHcCCC-EEEEecCCCCc--------------------H----
Confidence 1111222333333333 89999999642 221 2234567 88888874210 0
Q ss_pred HHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEee
Q 011355 222 ASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR 301 (488)
Q Consensus 222 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 301 (488)
..+ ...+.+|.+++.++.. + + ++.+++||+|.+.+.+. ..+++++++++++.++++.|+
T Consensus 134 ~~~-----~~~~~~d~v~~~~~~~-------~--~--~~~~i~n~v~~~~~~~~-----~~~~~~~~~~~~~~il~~~g~ 192 (364)
T 1f0k_A 134 TNK-----WLAKIATKVMQAFPGA-------F--P--NAEVVGNPVRTDVLALP-----LPQQRLAGREGPVRVLVVGGS 192 (364)
T ss_dssp HHH-----HHTTTCSEEEESSTTS-------S--S--SCEECCCCCCHHHHTSC-----CHHHHHTTCCSSEEEEEECTT
T ss_pred HHH-----HHHHhCCEEEecChhh-------c--C--CceEeCCccchhhcccc-----hhhhhcccCCCCcEEEEEcCc
Confidence 011 2356789999988764 2 2 57899999987665432 124667777776556667789
Q ss_pred eccccChHHHHHHHHHhHhhccCCCCCeE-EEEEeCCCchhHHh----hhC-CcEEEeCccCHHHHHHHHHhcCEEEeCC
Q 011355 302 LVKDKGHPLMFEALKQLLAENDTFRRSTV-FLVAGDGPWGARYR----DLG-TNVIVLGPLDQTRLAMFYNAIDIFVNPT 375 (488)
Q Consensus 302 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~-l~ivG~g~~~~~~~----~l~-~~V~~~g~v~~~~l~~~~~~adv~v~ps 375 (488)
+.+.||.+.+++|+..+.+ +++ ++++|+|+. +.++ +++ ++|.|.|++ +++.++|+.||++|+||
T Consensus 193 ~~~~k~~~~li~a~~~l~~-------~~~~l~i~G~~~~-~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s 262 (364)
T 1f0k_A 193 QGARILNQTMPQVAAKLGD-------SVTIWHQSGKGSQ-QSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVVVCRS 262 (364)
T ss_dssp TCCHHHHHHHHHHHHHHGG-------GEEEEEECCTTCH-HHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEEEECC
T ss_pred hHhHHHHHHHHHHHHHhcC-------CcEEEEEcCCchH-HHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEEEECC
Confidence 9999999999999999853 467 577898874 3333 233 589999998 59999999999999998
Q ss_pred CCCCCCChHHHHHHHcCCcEEEeCCCCccc------ceeecCCceeEeCC-C--HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011355 376 LRAQGLDHTVLEAMLSGKPLMATRLASIVG------SVIVGTDMGYLFSP-Q--VESVKKALYGIWADGREVLEKKGLVA 446 (488)
Q Consensus 376 ~~~eg~~~~~lEAma~G~PVI~~~~~~~~~------e~v~~~~~g~l~~~-d--~~~la~~i~~ll~~~~~~~~~~~~~a 446 (488)
| |++++|||++|+|||+++.+|.++ +.+.+.+.|+++++ | +++++++|.++ | ++.+++|++++
T Consensus 263 ----g-~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~-~~~~~~~~~~~ 334 (364)
T 1f0k_A 263 ----G-ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--S-RETLLTMAERA 334 (364)
T ss_dssp ----C-HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--C-HHHHHHHHHHH
T ss_pred ----c-hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc--C-HHHHHHHHHHH
Confidence 2 899999999999999999998642 13445556999998 7 99999999998 6 89999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHhhcc
Q 011355 447 RKRGLNLFTATKMAAAYERLFLCISND 473 (488)
Q Consensus 447 ~~~~~~~fs~~~~~~~~~~~~~~~~~~ 473 (488)
++.+. .|+|+.++++++++|++.-.+
T Consensus 335 ~~~~~-~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 335 RAASI-PDATERVANEVSRVARALEHH 360 (364)
T ss_dssp HHTCC-TTHHHHHHHHHHHHHTTC---
T ss_pred HHhhc-cCHHHHHHHHHHHHHHHHHhh
Confidence 99875 699999999999999875443
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.97 E-value=1.1e-29 Score=250.90 Aligned_cols=276 Identities=14% Similarity=0.086 Sum_probs=200.9
Q ss_pred CCcEEEeCCcc---hHHhhhc---cCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccE
Q 011355 164 PFDVIHTESVG---LRHTRAR---NLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAH 237 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~---~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 237 (488)
++|+||+|++. ++..+.. ..| ++.++|...... ..+. ..+ ....+. +.+-.+|.
T Consensus 123 ~~DiV~vHdyhl~~l~~~lr~~~~~~~-i~~~~H~pfp~~---~~~~---~lp---~~~~il----------~~ll~~d~ 182 (482)
T 1uqt_A 123 DDDIIWIHDYHLLPFAHELRKRGVNNR-IGFFLHIPFPTP---EIFN---ALP---TYDTLL----------EQLCDYDL 182 (482)
T ss_dssp TTCEEEEESGGGTTHHHHHHHTTCCSC-EEEECCSCCCCH---HHHT---TST---THHHHH----------HHHTTSSE
T ss_pred CCCEEEEECchHHHHHHHHHHhCCCCc-EEEEEcCCCCCH---HHHh---hCc---cHHHHH----------HhhhccCe
Confidence 67999999753 3333332 356 899999853211 1100 001 101111 12234566
Q ss_pred EEEcChhhHHHHHH-----------------HhcCCCCcEEEecCCccCCCcCCCccc-----chhhhhhhCCCCCCcEE
Q 011355 238 HVATSDHCGDVLKR-----------------IYMIPEERVHVILNGVDEEVFKPDVAM-----GKDFKKKFGIPENRSLV 295 (488)
Q Consensus 238 ii~~S~~~~~~~~~-----------------~~g~~~~~i~vi~ngvd~~~~~~~~~~-----~~~~r~~~~i~~~~~~~ 295 (488)
+...+....+.+.. .+| ...++.++|||||.+.|.+.... ...+|++++ ++ .+
T Consensus 183 i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g-~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~---~~-~v 257 (482)
T 1uqt_A 183 LGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWG-KAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK---NV-QN 257 (482)
T ss_dssp EEESSHHHHHHHHHHHHHHSCEEEETTTEEEETT-EEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT---TC-EE
T ss_pred EEEECHHHHHHHHHHHHHHhCCccccCCeEEECC-eEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhC---CC-EE
Confidence 66665554444432 122 24579999999998877542111 356788886 44 68
Q ss_pred EEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCC-----Cc----hhHHhhhC------------CcEEE-e
Q 011355 296 LGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDG-----PW----GARYRDLG------------TNVIV-L 353 (488)
Q Consensus 296 i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g-----~~----~~~~~~l~------------~~V~~-~ 353 (488)
|+++||+++.||++.+++|++.+.+++++++.+++|+++|.+ +. .++++++. ..|++ .
T Consensus 258 il~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~ 337 (482)
T 1uqt_A 258 IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLN 337 (482)
T ss_dssp EEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEEC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeC
Confidence 889999999999999999999999888433345889999952 21 12222221 13664 6
Q ss_pred CccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCC-----cEEEeCCCCcccceeecCCceeEeCC-CHHHHHHH
Q 011355 354 GPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGK-----PLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKA 427 (488)
Q Consensus 354 g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~-----PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~ 427 (488)
|.++.+++..+|+.||++|+||.+ ||||++++||||||+ |||+|+.+|.. +.+ .+|++++| |+++++++
T Consensus 338 g~v~~~el~~ly~~ADv~v~pS~~-EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~-~~l---~~g~lv~p~d~~~lA~a 412 (482)
T 1uqt_A 338 QHFDRKLLMKIFRYSDVGLVTPLR-DGMNLVAKEYVAAQDPANPGVLVLSQFAGAA-NEL---TSALIVNPYDRDEVAAA 412 (482)
T ss_dssp SCCCHHHHHHHHHHCSEEEECCSS-BSCCHHHHHHHHHSCTTSCCEEEEETTBGGG-GTC---TTSEEECTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHccEEEECCCc-ccCCchHHHHHHhCCCCCCCCEEEECCCCCH-HHh---CCeEEECCCCHHHHHHH
Confidence 899999999999999999999985 999999999999997 99999988877 444 37999999 99999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Q 011355 428 LYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 428 i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 470 (488)
|.+++++++++++++++++++.+.+ |||+.+++++.+.|+++
T Consensus 413 i~~lL~~~~~~r~~~~~~~~~~v~~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 413 LDRALTMSLAERISRHAEMLDVIVK-NDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhc
Confidence 9999997678899999999999976 89999999999999887
No 22
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.97 E-value=1.2e-29 Score=223.73 Aligned_cols=182 Identities=24% Similarity=0.356 Sum_probs=159.4
Q ss_pred ecCCccCCCcC--CCcc----cchhhhhhhCCCCCCcEEEEEEeeec-cccChHHHHHHHHHhH--hhccCCCCCeEEEE
Q 011355 263 ILNGVDEEVFK--PDVA----MGKDFKKKFGIPENRSLVLGMAGRLV-KDKGHPLMFEALKQLL--AENDTFRRSTVFLV 333 (488)
Q Consensus 263 i~ngvd~~~~~--~~~~----~~~~~r~~~~i~~~~~~~i~~~Grl~-~~Kg~~~ll~a~~~l~--~~~~~~~~~~~l~i 333 (488)
||||+|.+.|. +... .+..+|++++++++ .+++++|++. +.||++.+++++..+. ++. ++++|+|
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~~--~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~----~~~~l~i 75 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEG--VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEF----QEMRFII 75 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCSC--EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGG----GGEEEEE
T ss_pred CCCccChhhccccccccchhhHHHHHHHHcCCCCC--CEEEEeeccccccCCHHHHHHHHHHHHhhccC----CCeEEEE
Confidence 68999999987 5431 15678999998754 4888999999 9999999999999998 777 8999999
Q ss_pred EeCCC--chhHHhhhC---CcEEE-eCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccce
Q 011355 334 AGDGP--WGARYRDLG---TNVIV-LGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSV 407 (488)
Q Consensus 334 vG~g~--~~~~~~~l~---~~V~~-~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~ 407 (488)
+|.++ ..+.++++. .+|++ .|+++.+++..+|+.||++|+||.. |++|++++|||++|+|||+++.++.. ++
T Consensus 76 ~G~~~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~-e~~~~~~~Ea~a~G~PvI~~~~~~~~-e~ 153 (200)
T 2bfw_A 76 IGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPIASAVGGLR-DI 153 (200)
T ss_dssp ECCBCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSC-CSSCHHHHHHHHTTCEEEEESCHHHH-HH
T ss_pred ECCCChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHCCEEEECCCC-CCccHHHHHHHHCCCCEEEeCCCChH-HH
Confidence 99988 555555421 28999 9999999999999999999999975 99999999999999999999999988 88
Q ss_pred eecCCceeEeCC-CHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhCC
Q 011355 408 IVGTDMGYLFSP-QVESVKKALYGIWA-DGREVLEKKGLVARKRGLNLFT 455 (488)
Q Consensus 408 v~~~~~g~l~~~-d~~~la~~i~~ll~-~~~~~~~~~~~~a~~~~~~~fs 455 (488)
+ ++.+|+++++ |+++++++|.++++ + ++.+++|++++++++.+ ||
T Consensus 154 ~-~~~~g~~~~~~~~~~l~~~i~~l~~~~-~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 154 I-TNETGILVKAGDPGELANAILKALELS-RSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp C-CTTTCEEECTTCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHH-TC
T ss_pred c-CCCceEEecCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh-cC
Confidence 8 8999999998 99999999999999 8 99999999999999988 86
No 23
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=7.8e-29 Score=245.07 Aligned_cols=302 Identities=15% Similarity=0.104 Sum_probs=199.8
Q ss_pred CCcEEEeCCcc---hHHhhhc---cCCcEEEeeeCCcchhh---hh--hhhHhhhcCCCChhHHHHHHHHHHHHHHhhhc
Q 011355 164 PFDVIHTESVG---LRHTRAR---NLTNVVVSWHGIAYETI---HS--DIIQELLRTPEEPQAYALAERASKVVEEVKFF 232 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~---~~p~~v~~~h~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (488)
+|||+|+|.+. .+.+++. .++ .+.++|....... .. ++...+ ..-.......-.........+....
T Consensus 181 ~pdIiH~HDW~tg~~~~~Lk~~~~~i~-tVfTiH~telGR~lagqg~~~~y~~L-~~~~~d~ea~~~~i~~~~~~EKaga 258 (725)
T 3nb0_A 181 HAIVAHFHEWLAGVALPLCRKRRIDVV-TIFTTHATLLGRYLCASGSFDFYNCL-ESVDVDHEAGRFGIYHRYCIERAAA 258 (725)
T ss_dssp EEEEEEEESGGGCTHHHHHHHTTCSCE-EEEEESSCHHHHHHTSSSCSCHHHHG-GGCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcEEEeCchhhhHHHHHHHHhCCCCC-EEEEEecchhhhhhhhcCCCchhhhh-hhcCCChhhhhhchhHHHHHHHHHH
Confidence 69999999742 2333322 345 9999998742211 01 111111 1000000000000111222233456
Q ss_pred CCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcc---cchhhhhh------------hCCCCCCcEEEE
Q 011355 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVA---MGKDFKKK------------FGIPENRSLVLG 297 (488)
Q Consensus 233 ~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~---~~~~~r~~------------~~i~~~~~~~i~ 297 (488)
..||.|+++|+..++.+...++.+++.+ ||||+|.+.|.+... .+...|++ ++++.++.+++.
T Consensus 259 ~~AD~ITTVS~~yA~Ei~~Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liif 336 (725)
T 3nb0_A 259 HSADVFTTVSQITAFEAEHLLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFF 336 (725)
T ss_dssp HHSSEEEESSHHHHHHHHHHTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEE
T ss_pred HhCCEEEECCHHHHHHHHHHhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEE
Confidence 7899999999999999999888776655 999999999877421 11122222 256555657777
Q ss_pred EEeeec-cccChHHHHHHHHHhHhh---ccCCCCCeEEEEEeCCCch---------------------------------
Q 011355 298 MAGRLV-KDKGHPLMFEALKQLLAE---NDTFRRSTVFLVAGDGPWG--------------------------------- 340 (488)
Q Consensus 298 ~~Grl~-~~Kg~~~ll~a~~~l~~~---~~~~~~~~~l~ivG~g~~~--------------------------------- 340 (488)
.+||+. .+||++.+++|+.++... ...-+.-+.|+|++.+...
T Consensus 337 ivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 416 (725)
T 3nb0_A 337 IAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDH 416 (725)
T ss_dssp EESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 799999 789999999999988743 1000023667777653110
Q ss_pred ------------------------hH--Hh----------------------------------h--hCCc------EEE
Q 011355 341 ------------------------AR--YR----------------------------------D--LGTN------VIV 352 (488)
Q Consensus 341 ------------------------~~--~~----------------------------------~--l~~~------V~~ 352 (488)
+. ++ . +.++ |+|
T Consensus 417 ~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf 496 (725)
T 3nb0_A 417 AIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIF 496 (725)
T ss_dssp HHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEE
T ss_pred HhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEE
Confidence 00 01 0 1122 555
Q ss_pred e-CccCHH------HHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecC-------CceeEeC
Q 011355 353 L-GPLDQT------RLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGT-------DMGYLFS 418 (488)
Q Consensus 353 ~-g~v~~~------~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~-------~~g~l~~ 418 (488)
. ++++.+ ++.++|+.||++|+||.+ ||||++++||||||+|||+|+.+|.. +.+.++ .+|+++.
T Consensus 497 ~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~-EgfGl~~LEAmA~G~PvI~s~~gG~~-d~V~dg~~~~~~~~tG~lV~ 574 (725)
T 3nb0_A 497 HPEFLNANNPILGLDYDEFVRGCHLGVFPSYY-EPWGYTPAECTVMGVPSITTNVSGFG-SYMEDLIETNQAKDYGIYIV 574 (725)
T ss_dssp CCSCCCTTCSSSCCCHHHHHHHCSEEECCCSS-BSSCHHHHHHHHTTCCEEEETTBHHH-HHHHTTSCHHHHHHTTEEEE
T ss_pred eccccCCCCccchhHHHHHHhhceEEEecccc-CCCCHHHHHHHHcCCCEEEeCCCChh-hhhhccccccCCCCceEEEe
Confidence 5 567655 589999999999999975 99999999999999999999999988 777665 3698883
Q ss_pred ---C-CHHHHHHHH----HHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhc
Q 011355 419 ---P-QVESVKKAL----YGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISN 472 (488)
Q Consensus 419 ---~-d~~~la~~i----~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 472 (488)
+ |+++++++| ..+++.+++.+..|++++++.+. .|+|++++++|.++|+.++.
T Consensus 575 ~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~-~FSWe~iA~~Yl~~Ye~aL~ 635 (725)
T 3nb0_A 575 DRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSD-LLDWKRMGLEYVKARQLALR 635 (725)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGG-GGBHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHh
Confidence 3 555555544 44444447888999999988875 69999999999999998774
No 24
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.96 E-value=6.5e-27 Score=227.95 Aligned_cols=280 Identities=12% Similarity=0.050 Sum_probs=207.6
Q ss_pred CCcEEEeCCcc---hHHhhhccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESVG---LRHTRARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
.-|+|.+|++. ++..+....|+ +...+|..++. .+++. .. + ..+.+.+. +.+-.+|.|
T Consensus 149 ~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs---~e~f~----~L--p--~~~r~ell------~gll~~Dli 211 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS---ADYWR----IL--P--KEIRTGIL------HGMLPATTI 211 (496)
T ss_dssp SSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCC---HHHHT----TS--C--HHHHHHHH------HHHTTSSEE
T ss_pred CCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCC---HHHHh----hC--c--HhHHHHHH------HHHHhCCEE
Confidence 57999999864 45555543332 77778865321 11111 00 0 00111111 445789999
Q ss_pred EEcChhhHHHHHHH----h-cCC-------------CCcEEEecCCccCCCcCCCcc-cchhhhhhhCCCCCCcEEEEEE
Q 011355 239 VATSDHCGDVLKRI----Y-MIP-------------EERVHVILNGVDEEVFKPDVA-MGKDFKKKFGIPENRSLVLGMA 299 (488)
Q Consensus 239 i~~S~~~~~~~~~~----~-g~~-------------~~~i~vi~ngvd~~~~~~~~~-~~~~~r~~~~i~~~~~~~i~~~ 299 (488)
.+.+....+.+.+. + |.+ ..++.++|+|||.+.|.+... ....+|++++ ++ .+|+++
T Consensus 212 gF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~---~~-~lIl~V 287 (496)
T 3t5t_A 212 GFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD---GH-RLVVHS 287 (496)
T ss_dssp EESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT---TS-EEEEEE
T ss_pred EEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC---Cc-eEEEEc
Confidence 99999888776552 2 321 126789999999998876432 2367888887 44 678899
Q ss_pred eeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeC-----CCchh----HHhhh----C-----CcEEEeCccCHHHH
Q 011355 300 GRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGD-----GPWGA----RYRDL----G-----TNVIVLGPLDQTRL 361 (488)
Q Consensus 300 Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-----g~~~~----~~~~l----~-----~~V~~~g~v~~~~l 361 (488)
||+++.||++.+++|+ ++.+++++++ ++.|+++|. ++..+ +++++ . ..|+|+|.++.+++
T Consensus 288 gRLd~~KGi~~lL~Af-~ll~~~P~~~-~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el 365 (496)
T 3t5t_A 288 GRTDPIKNAERAVRAF-VLAARGGGLE-KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHT 365 (496)
T ss_dssp EESSGGGCHHHHHHHH-HHHHHTSSCT-TEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHH
T ss_pred ccCccccCHHHHHHHH-HHHHhCcccc-eEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHH
Confidence 9999999999999999 9998884443 577888863 22222 22222 1 16999999999999
Q ss_pred HHHHHhcCEEEeCCCCCCCCChHHHHHHHcC---CcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHH
Q 011355 362 AMFYNAIDIFVNPTLRAQGLDHTVLEAMLSG---KPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGRE 437 (488)
Q Consensus 362 ~~~~~~adv~v~ps~~~eg~~~~~lEAma~G---~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~ 437 (488)
..+|+.||+++.||.+ ||||++++|||+|| .|+|.|+.+|.. +.+ +.+|++++| |+++++++|.++++++++
T Consensus 366 ~aly~~ADv~vv~Slr-EGfgLv~~EamA~~~~~g~lVlSe~aGa~-~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~ 441 (496)
T 3t5t_A 366 IACFRRADLLIFNSTV-DGQNLSTFEAPLVNERDADVILSETCGAA-EVL--GEYCRSVNPFDLVEQAEAISAALAAGPR 441 (496)
T ss_dssp HHHHHHCSEEEECCSS-BSCCSHHHHHHHHCSSCCEEEEETTBTTH-HHH--GGGSEEECTTBHHHHHHHHHHHHHCCHH
T ss_pred HHHHHhccEEEECccc-ccCChhHHHHHHhCCCCCCEEEeCCCCCH-HHh--CCCEEEECCCCHHHHHHHHHHHHcCCHH
Confidence 9999999999999986 99999999999997 899999999988 444 357999999 999999999999998788
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Q 011355 438 VLEKKGLVARKRGLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 438 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
+++++.++.++++.+ ++....++.+.+-+....
T Consensus 442 er~~r~~~~~~~V~~-~d~~~W~~~fl~~L~~~~ 474 (496)
T 3t5t_A 442 QRAEAAARRRDAARP-WTLEAWVQAQLDGLAADH 474 (496)
T ss_dssp HHHHHHHHHHHHHTT-CBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCHHHHHHHHHHHHhhcc
Confidence 999999999999966 799999999988887653
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.96 E-value=1.4e-27 Score=231.97 Aligned_cols=342 Identities=13% Similarity=0.049 Sum_probs=218.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCC----CCCCCCce-EEEecCCCCccCcc-hh
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCLNCS----FPTYPISS-LYFHLSKPTAAGYL-DQ 148 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~----~~~~~~~~-i~~~~~~~~~~~~~-~~ 148 (488)
.|||++++...| +. .....++++|.+. ||+|.+++....... ....+... +.+..... ..... ..
T Consensus 5 mmkIl~v~~~~~------~~-~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 76 (376)
T 1v4v_A 5 MKRVVLAFGTRP------EA-TKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQE-RQALPDLA 76 (376)
T ss_dssp CEEEEEEECSHH------HH-HHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSS-CCCHHHHH
T ss_pred ceEEEEEEeccH------HH-HHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcCCCcccccccCCC-CccHHHHH
Confidence 389999986321 11 2245789999988 799887765431110 00011111 11111110 00111 11
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeCCcc---hH---HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 149 SIVWQQLQTQNSTGKPFDVIHTESVG---LR---HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Dvv~~~~~~---~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
......+.+..++. +||+||+|+.. +. .....++| ++...++..... .+ .++.....+
T Consensus 77 ~~~~~~l~~~l~~~-~pDvv~~~~~~~~~~~~~~~a~~~~ip-~v~~~~~~~~~~----------~~--~~~~~~~~~-- 140 (376)
T 1v4v_A 77 ARILPQAARALKEM-GADYVLVHGDTLTTFAVAWAAFLEGIP-VGHVEAGLRSGN----------LK--EPFPEEANR-- 140 (376)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEEESSCHHHHHHHHHHHHTTCC-EEEETCCCCCSC----------TT--SSTTHHHHH--
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeCChHHHHHHHHHHHHhCCC-EEEEeCCCcccc----------cc--CCCchHHHH--
Confidence 12233333433333 89999998532 21 12234567 654433321100 00 000011111
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCc-cCCCcCCCcccchhhhhhhCCCCCCcEEEEEEee
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGV-DEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGR 301 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngv-d~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 301 (488)
+ ...+.+|.++++|+..++.+.+ +|++++++.+++|++ |...+... +..++++++ +++++++++||
T Consensus 141 -~-----~~~~~~~~~~~~s~~~~~~l~~-~g~~~~ki~vi~n~~~d~~~~~~~---~~~~~~~~~---~~~~vl~~~gr 207 (376)
T 1v4v_A 141 -R-----LTDVLTDLDFAPTPLAKANLLK-EGKREEGILVTGQTGVDAVLLAAK---LGRLPEGLP---EGPYVTVTMHR 207 (376)
T ss_dssp -H-----HHHHHCSEEEESSHHHHHHHHT-TTCCGGGEEECCCHHHHHHHHHHH---HCCCCTTCC---SSCEEEECCCC
T ss_pred -H-----HHHHHhceeeCCCHHHHHHHHH-cCCCcceEEEECCchHHHHhhhhh---hhHHHHhcC---CCCEEEEEeCc
Confidence 1 1123578999999999999988 688888999999964 43221111 112333332 33377888999
Q ss_pred eccccChHHHHHHHHHhHhhccCCCCCeEEEEE-eCCC-chhHHhhh---CCcEEEeCccCHHHHHHHHHhcCEEEeCCC
Q 011355 302 LVKDKGHPLMFEALKQLLAENDTFRRSTVFLVA-GDGP-WGARYRDL---GTNVIVLGPLDQTRLAMFYNAIDIFVNPTL 376 (488)
Q Consensus 302 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-G~g~-~~~~~~~l---~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 376 (488)
+...||++.+++|++.+.++. |+++++++ |+++ ..+.++++ .++|+|+|+++..++.++|+.||++|.||
T Consensus 208 ~~~~k~~~~ll~a~~~l~~~~----~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S- 282 (376)
T 1v4v_A 208 RENWPLLSDLAQALKRVAEAF----PHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS- 282 (376)
T ss_dssp GGGGGGHHHHHHHHHHHHHHC----TTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-
T ss_pred ccchHHHHHHHHHHHHHHhhC----CCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-
Confidence 988889999999999998877 88998886 7665 34555543 36899999888889999999999999998
Q ss_pred CCCCCChHHHHHHHcCCcEEEe-CCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCC
Q 011355 377 RAQGLDHTVLEAMLSGKPLMAT-RLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFT 455 (488)
Q Consensus 377 ~~eg~~~~~lEAma~G~PVI~~-~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs 455 (488)
+ |+ ++|||++|+|||++ +.++.. +++. +++|++++.|+++++++|.++++| ++.+++|++++ +.|.
T Consensus 283 --~--g~-~lEA~a~G~PvI~~~~~~~~~-~~~~-~g~g~lv~~d~~~la~~i~~ll~d-~~~~~~~~~~~-----~~~~ 349 (376)
T 1v4v_A 283 --G--GL-QEEGAALGVPVVVLRNVTERP-EGLK-AGILKLAGTDPEGVYRVVKGLLEN-PEELSRMRKAK-----NPYG 349 (376)
T ss_dssp --H--HH-HHHHHHTTCCEEECSSSCSCH-HHHH-HTSEEECCSCHHHHHHHHHHHHTC-HHHHHHHHHSC-----CSSC
T ss_pred --c--CH-HHHHHHcCCCEEeccCCCcch-hhhc-CCceEECCCCHHHHHHHHHHHHhC-hHhhhhhcccC-----CCCC
Confidence 3 33 88999999999987 567776 6654 458999855999999999999998 88889888643 4466
Q ss_pred HHHHHHHHHHHHHHhhc
Q 011355 456 ATKMAAAYERLFLCISN 472 (488)
Q Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (488)
+...++++.+.+.++++
T Consensus 350 ~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 350 DGKAGLMVARGVAWRLG 366 (376)
T ss_dssp CSCHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhc
Confidence 66677777777777765
No 26
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.95 E-value=9.6e-28 Score=204.73 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=133.7
Q ss_pred cEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh----hCCcEEEeCccCHHHHHHHHHhc
Q 011355 293 SLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD----LGTNVIVLGPLDQTRLAMFYNAI 368 (488)
Q Consensus 293 ~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~----l~~~V~~~g~v~~~~l~~~~~~a 368 (488)
+++|+++|++.+.||++.+++|+..+. +. ++++|+|+|+|+..+.+++ ++.+|.+ |+++.+++..+|+.|
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~-~~----~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~a 75 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK-YK----QDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTC 75 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT-TG----GGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTC
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc-cC----CCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhC
Confidence 378999999999999999999999984 44 7999999999987766554 4458999 999999999999999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCC-cEEE-eCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011355 369 DIFVNPTLRAQGLDHTVLEAMLSGK-PLMA-TRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGREVLEKKGLV 445 (488)
Q Consensus 369 dv~v~ps~~~eg~~~~~lEAma~G~-PVI~-~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~ 445 (488)
|++|+||. .||||++++|||++|+ |||+ ++.++.. +++.++.+ ++++ |+++++++|.+++++ ++.+++|+++
T Consensus 76 dv~v~ps~-~e~~~~~~~Eama~G~vPvi~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~ 150 (166)
T 3qhp_A 76 TLYVHAAN-VESEAIACLEAISVGIVPVIANSPLSATR-QFALDERS--LFEPNNAKDLSAKIDWWLEN-KLERERMQNE 150 (166)
T ss_dssp SEEEECCC-SCCCCHHHHHHHHTTCCEEEECCTTCGGG-GGCSSGGG--EECTTCHHHHHHHHHHHHHC-HHHHHHHHHH
T ss_pred CEEEECCc-ccCccHHHHHHHhcCCCcEEeeCCCCchh-hhccCCce--EEcCCCHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence 99999997 5999999999999998 9999 5677776 77766544 7777 999999999999998 9999999999
Q ss_pred HHHHHhhhCCHHHHHHH
Q 011355 446 ARKRGLNLFTATKMAAA 462 (488)
Q Consensus 446 a~~~~~~~fs~~~~~~~ 462 (488)
+++++ ++|+|++++++
T Consensus 151 ~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 151 YAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp HHHHH-HHHC-------
T ss_pred HHHHH-HHCChhhhhcC
Confidence 99998 67999998763
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.95 E-value=2.4e-27 Score=228.92 Aligned_cols=295 Identities=12% Similarity=0.019 Sum_probs=200.3
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEE--EecCCCCccCcchhHHHHHHHHHHhcCCCCCcEE
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLY--FHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVI 168 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 168 (488)
...|..+.+..|+++|.++| +|.+.+....+.........++. .. .+ ++....+.++.+.. +||+|
T Consensus 48 ~s~G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~~~~~~~~~~v~~~~~--~p-----~~~~~~l~~~l~~~----~pDiv 115 (374)
T 2xci_A 48 ASIGEFNTFLPILKELKREH-RILLTYFSPRAREYLKTKSDFYDCLHP--LP-----LDNPFSVKRFEELS----KPKAL 115 (374)
T ss_dssp SSHHHHHHHHHHHHHHHHHS-CEEEEESCGGGHHHHHTTGGGCSEEEE--CC-----CSSHHHHHHHHHHH----CCSEE
T ss_pred CCHHHHHHHHHHHHHHHhcC-CEEEEEcCCcHHHHHHHhcccccceeE--CC-----CCCHHHHHHHHHHh----CCCEE
Confidence 45788899999999999998 88877665432210000002222 11 11 12223334444444 89999
Q ss_pred EeCCcch-HHhh--hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEEEEcChhh
Q 011355 169 HTESVGL-RHTR--ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHC 245 (488)
Q Consensus 169 ~~~~~~~-~~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~ 245 (488)
|++...+ +... ... | ++...+... . +. +.+ ..++++|.++++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~-p-~~~~~~~~~---------------~-----~~----~~~-----~~~~~~d~ii~~S~~~ 164 (374)
T 2xci_A 116 IVVEREFWPSLIIFTKV-P-KILVNAYAK---------------G-----SL----IEK-----ILSKKFDLIIMRTQED 164 (374)
T ss_dssp EEESCCCCHHHHHHCCS-C-EEEEEECCC---------------C-----CH----HHH-----HHHTTCSEEEESCHHH
T ss_pred EEECccCcHHHHHHHhC-C-EEEEEeecC---------------c-----hH----HHH-----HHHHhCCEEEECCHHH
Confidence 9754322 1111 122 5 544433210 0 01 111 3467899999999999
Q ss_pred HHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCC
Q 011355 246 GDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTF 325 (488)
Q Consensus 246 ~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~ 325 (488)
++.+.+ +|++ ++.+++|+.. ....... +. + .+ +++++.|+ ..||++.+++|++.+.++.
T Consensus 165 ~~~l~~-~g~~--ki~vi~n~~f----~~~~~~~----~~--l--~~-~vi~~~~~--~~k~~~~ll~A~~~l~~~~--- 223 (374)
T 2xci_A 165 VEKFKT-FGAK--RVFSCGNLKF----ICQKGKG----IK--L--KG-EFIVAGSI--HTGEVEIILKAFKEIKKTY--- 223 (374)
T ss_dssp HHHHHT-TTCC--SEEECCCGGG----CCCCCSC----CC--C--SS-CEEEEEEE--CGGGHHHHHHHHHHHHTTC---
T ss_pred HHHHHH-cCCC--eEEEcCCCcc----CCCcChh----hh--h--cC-CEEEEEeC--CCchHHHHHHHHHHHHhhC---
Confidence 999988 6876 8999999731 1111000 11 1 12 35556665 4689999999999999888
Q ss_pred CCCeEEEEEeCCCch-hHHhh----hC----------CcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHH
Q 011355 326 RRSTVFLVAGDGPWG-ARYRD----LG----------TNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAML 390 (488)
Q Consensus 326 ~~~~~l~ivG~g~~~-~~~~~----l~----------~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma 390 (488)
|+++|+|+|+|+.+ +.+++ ++ .+|.+.|+. +|+..+|+.||++++||...|++|++++|||+
T Consensus 224 -p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA 300 (374)
T 2xci_A 224 -SSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGTFVNIGGHNLLEPTC 300 (374)
T ss_dssp -TTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHT
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCcccCCCCcCHHHHHH
Confidence 89999999999876 34443 22 368888874 59999999999988876444778999999999
Q ss_pred cCCcEEEe-CCCCcccceeecC-CceeEeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCC
Q 011355 391 SGKPLMAT-RLASIVGSVIVGT-DMGYLFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFT 455 (488)
Q Consensus 391 ~G~PVI~~-~~~~~~~e~v~~~-~~g~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs 455 (488)
||+|||++ +.++.+ |++.+. .+|+++++ |+++|+++|.++++| +.+++|+++++++++++++
T Consensus 301 ~G~PVI~~~~~~~~~-e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d--~~r~~mg~~ar~~~~~~~g 365 (374)
T 2xci_A 301 WGIPVIYGPYTHKVN-DLKEFLEKEGAGFEVKNETELVTKLTELLSV--KKEIKVEEKSREIKGCYLE 365 (374)
T ss_dssp TTCCEEECSCCTTSH-HHHHHHHHTTCEEECCSHHHHHHHHHHHHHS--CCCCCHHHHHHHHHHHHHH
T ss_pred hCCCEEECCCccChH-HHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhccc
Confidence 99999975 777877 666542 46777777 999999999999986 7788999999999987654
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.93 E-value=1.6e-25 Score=192.79 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=125.8
Q ss_pred CCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhh--------hCCcEEEeCccCH
Q 011355 287 GIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRD--------LGTNVIVLGPLDQ 358 (488)
Q Consensus 287 ~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~--------l~~~V~~~g~v~~ 358 (488)
.++.++ ++|+|+|++.+.||++.+++++..+ ++++|+|+|.++..+.+++ +.++|+|.|++++
T Consensus 18 ~~~~~~-~~i~~~G~~~~~Kg~~~li~a~~~l--------~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~ 88 (177)
T 2f9f_A 18 KFKCYG-DFWLSVNRIYPEKRIELQLEVFKKL--------QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSE 88 (177)
T ss_dssp CCCCCC-SCEEEECCSSGGGTHHHHHHHHHHC--------TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCH
T ss_pred ccCCCC-CEEEEEeccccccCHHHHHHHHHhC--------CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCH
Confidence 355565 6788999999999999999999987 6789999999876544433 3469999999999
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhcCHH
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWADGRE 437 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~~~~ 437 (488)
+++..+|+.||++|+||. .|++|++++|||+||+|||+++.++.. +++.++.+|+++ + |+++++++|.+++++ ++
T Consensus 89 ~e~~~~~~~adi~v~ps~-~e~~~~~~~Eama~G~PvI~~~~~~~~-e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~-~~ 164 (177)
T 2f9f_A 89 EELIDLYSRCKGLLCTAK-DEDFGLTPIEAMASGKPVIAVNEGGFK-ETVINEKTGYLV-NADVNEIIDAMKKVSKN-PD 164 (177)
T ss_dssp HHHHHHHHHCSEEEECCS-SCCSCHHHHHHHHTTCCEEEESSHHHH-HHCCBTTTEEEE-CSCHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHhCCEEEeCCC-cCCCChHHHHHHHcCCcEEEeCCCCHH-HHhcCCCccEEe-CCCHHHHHHHHHHHHhC-HH
Confidence 999999999999999997 599999999999999999999999987 899999999999 6 999999999999998 55
Q ss_pred H-HHHHHHH
Q 011355 438 V-LEKKGLV 445 (488)
Q Consensus 438 ~-~~~~~~~ 445 (488)
. +++++++
T Consensus 165 ~~~~~~~~~ 173 (177)
T 2f9f_A 165 KFKKDCFRR 173 (177)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 3 3333333
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.92 E-value=2.8e-23 Score=195.68 Aligned_cols=303 Identities=10% Similarity=-0.041 Sum_probs=199.8
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHH
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQL 155 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 155 (488)
-|++-+.. .|-+. ...++...-....+-+.+.|++-.-+........ . .......+
T Consensus 10 ~m~~~i~~-~~~~~-~~~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~-------------------~---~~~~~~~~ 65 (339)
T 3rhz_A 10 CMRVYITN-INGQS-IQSTAQLCQNTVTDVAVSLGYRELGIYCYQIHTD-------------------S---ESELSKRL 65 (339)
T ss_dssp CCCEEEEE-EESSC-TTCHHHHHHHHHHHHHHHTTCEEEEEECCCGGGS-------------------C---HHHHHHHH
T ss_pred hhheeeec-ccCcc-ccchHHHHHHHHHHHHHHCCCeEEEeeccccccc-------------------c---HHHHHHHH
Confidence 36654444 33222 3344455555666666778997655543211000 0 01112222
Q ss_pred HHHhcCCCCCcEEEeCCcch-----H-Hhh----hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHH
Q 011355 156 QTQNSTGKPFDVIHTESVGL-----R-HTR----ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKV 225 (488)
Q Consensus 156 ~~~~~~~~~~Dvv~~~~~~~-----~-~~~----~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (488)
.......+++|+|+++++.+ . .++ ..+.| ++..+||+++..... ... ..
T Consensus 66 ~~~~~~~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k-~i~~ihDl~pl~~~~-----------~~~---~~------ 124 (339)
T 3rhz_A 66 DGIVAGLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIK-IVLFIHDVVPLMFSG-----------NFY---LM------ 124 (339)
T ss_dssp HHHTTTCCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCE-EEEEESCCHHHHCGG-----------GGG---GH------
T ss_pred HHHHhcCCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCE-EEEEecccHHhhCcc-----------chh---hH------
Confidence 23333444899999976432 1 111 12456 999999986643211 000 00
Q ss_pred HHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccc
Q 011355 226 VEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKD 305 (488)
Q Consensus 226 ~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~ 305 (488)
..+...++++|.|+++|+.+++.+.+ .|++..++.++++. |... ..+. ..+.++ ++++|+|++...
T Consensus 125 ~~E~~~y~~aD~Ii~~S~~~~~~l~~-~G~~~~ki~~~~~~-~~~~--~~~~---------~~~~~~-~~i~yaG~l~k~ 190 (339)
T 3rhz_A 125 DRTIAYYNKADVVVAPSQKMIDKLRD-FGMNVSKTVVQGMW-DHPT--QAPM---------FPAGLK-REIHFPGNPERF 190 (339)
T ss_dssp HHHHHHHTTCSEEEESCHHHHHHHHH-TTCCCSEEEECCSC-CCCC--CCCC---------CCCEEE-EEEEECSCTTTC
T ss_pred HHHHHHHHHCCEEEECCHHHHHHHHH-cCCCcCceeecCCC-CccC--cccc---------cccCCC-cEEEEeCCcchh
Confidence 12446789999999999999999998 79877787655542 2211 1000 112223 789999999853
Q ss_pred cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCC------CC
Q 011355 306 KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLR------AQ 379 (488)
Q Consensus 306 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~------~e 379 (488)
..+. . + . ++++|+|+|+|+.. ++. ||+|+|+++.+++..+|+++|+.+..... ..
T Consensus 191 ~~L~----~---l---~----~~~~f~ivG~G~~~----~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~ 251 (339)
T 3rhz_A 191 SFVK----E---W---K----YDIPLKVYTWQNVE----LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSL 251 (339)
T ss_dssp GGGG----G---C---C----CSSCEEEEESCCCC----CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTT
T ss_pred hHHH----h---C---C----CCCeEEEEeCCccc----CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHh
Confidence 3221 1 1 3 78999999999875 355 99999999999999999999997775210 13
Q ss_pred CCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHH
Q 011355 380 GLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKM 459 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~ 459 (488)
++|++++||||||+|||+++.++.. +++.++++|+.++ +.++++++|..+. ++.+++|++++++.+.+ +++..+
T Consensus 252 ~~P~Kl~eymA~G~PVI~~~~~~~~-~~v~~~~~G~~~~-~~~e~~~~i~~l~---~~~~~~m~~na~~~a~~-~~~~~f 325 (339)
T 3rhz_A 252 YCSYKLGSFLAAGIPVIVQEGIANQ-ELIENNGLGWIVK-DVEEAIMKVKNVN---EDEYIELVKNVRSFNPI-LRKGFF 325 (339)
T ss_dssp CCCHHHHHHHHHTCCEEEETTCTTT-HHHHHHTCEEEES-SHHHHHHHHHHCC---HHHHHHHHHHHHHHTHH-HHTTHH
T ss_pred cChHHHHHHHHcCCCEEEccChhHH-HHHHhCCeEEEeC-CHHHHHHHHHHhC---HHHHHHHHHHHHHHHHH-hhccHH
Confidence 5699999999999999999999988 9999999999998 7899999998862 56789999999988654 555554
Q ss_pred HHH
Q 011355 460 AAA 462 (488)
Q Consensus 460 ~~~ 462 (488)
.++
T Consensus 326 ~k~ 328 (339)
T 3rhz_A 326 TRR 328 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.92 E-value=1.4e-24 Score=210.80 Aligned_cols=332 Identities=14% Similarity=0.112 Sum_probs=214.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCC----CCCCCC-ceEEEecCCCCccCcchh
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCLNCS----FPTYPI-SSLYFHLSKPTAAGYLDQ 148 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~----~~~~~~-~~i~~~~~~~~~~~~~~~ 148 (488)
.+|||++++. ...|.. .+..++++|++. |+++.++........ ....+. +...+.............
T Consensus 24 ~m~ki~~v~G------tr~~~~-~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~ 96 (396)
T 3dzc_A 24 AMKKVLIVFG------TRPEAI-KMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGVT 96 (396)
T ss_dssp CCEEEEEEEC------SHHHHH-HHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHHH
T ss_pred CCCeEEEEEe------ccHhHH-HHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCCCceeeecCCCCCCHHHHH
Confidence 4579999986 333443 446899999987 788876665432110 001121 222222211111011122
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeCCcc---hH---HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 149 SIVWQQLQTQNSTGKPFDVIHTESVG---LR---HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Dvv~~~~~~---~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
......+.+..++. +||+|++++.. ++ .....++| ++...++......+ .++....
T Consensus 97 ~~~~~~l~~~l~~~-kPDvVi~~g~~~~~~~~~~aa~~~~IP-v~h~~ag~rs~~~~------------~~~~~~~---- 158 (396)
T 3dzc_A 97 SKILLGMQQVLSSE-QPDVVLVHGDTATTFAASLAAYYQQIP-VGHVEAGLRTGNIY------------SPWPEEG---- 158 (396)
T ss_dssp HHHHHHHHHHHHHH-CCSEEEEETTSHHHHHHHHHHHTTTCC-EEEETCCCCCSCTT------------SSTTHHH----
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCchhHHHHHHHHHHhCCC-EEEEECCccccccc------------cCCcHHH----
Confidence 33344444444444 89999998621 22 22334677 66544332110000 0000111
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCC-ccCCCcCCCcc-c----chhhhhhhC-CCCCCcEE
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNG-VDEEVFKPDVA-M----GKDFKKKFG-IPENRSLV 295 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ng-vd~~~~~~~~~-~----~~~~r~~~~-i~~~~~~~ 295 (488)
.+.. .-+.+|.++++|+..++.+.+ .|++++++.+++|+ +|...+..... . +.++++++| ++++++++
T Consensus 159 ~r~~----~~~~a~~~~~~se~~~~~l~~-~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~v 233 (396)
T 3dzc_A 159 NRKL----TAALTQYHFAPTDTSRANLLQ-ENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLI 233 (396)
T ss_dssp HHHH----HHHTCSEEEESSHHHHHHHHH-TTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEE
T ss_pred HHHH----HHHhcCEEECCCHHHHHHHHH-cCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEE
Confidence 1111 123578999999999999988 79998999999995 45432222110 1 256788899 46666566
Q ss_pred EEEEeeec-cccChHHHHHHHHHhHhhccCCCCCeEEEEE-eCCC-chhHHhhh---CCcEEEeCccCHHHHHHHHHhcC
Q 011355 296 LGMAGRLV-KDKGHPLMFEALKQLLAENDTFRRSTVFLVA-GDGP-WGARYRDL---GTNVIVLGPLDQTRLAMFYNAID 369 (488)
Q Consensus 296 i~~~Grl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-G~g~-~~~~~~~l---~~~V~~~g~v~~~~l~~~~~~ad 369 (488)
+++.+|.. ..|+++.+++|+..+.+++ |++++++. |.++ ..+.+++. .++|.+.++++..++..+|+.||
T Consensus 234 lv~~hR~~~~~~~~~~ll~A~~~l~~~~----~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad 309 (396)
T 3dzc_A 234 LVTGHRRESFGGGFERICQALITTAEQH----PECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAH 309 (396)
T ss_dssp EEECSCBCCCTTHHHHHHHHHHHHHHHC----TTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCS
T ss_pred EEEECCcccchhHHHHHHHHHHHHHHhC----CCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcC
Confidence 66666643 3478999999999999888 89998885 6544 24445442 36899999999889999999999
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEEe-CCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011355 370 IFVNPTLRAQGLDHTVLEAMLSGKPLMAT-RLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARK 448 (488)
Q Consensus 370 v~v~ps~~~eg~~~~~lEAma~G~PVI~~-~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~ 448 (488)
++|.+| | | ..+|||++|+|||++ +.++.. +.+.+| .+++++.|.+++++++.+++++ ++.+++|++++..
T Consensus 310 ~vv~~S----G-g-~~~EA~a~G~PvV~~~~~~~~~-e~v~~G-~~~lv~~d~~~l~~ai~~ll~d-~~~~~~m~~~~~~ 380 (396)
T 3dzc_A 310 IILTDS----G-G-IQEEAPSLGKPVLVMRETTERP-EAVAAG-TVKLVGTNQQQICDALSLLLTD-PQAYQAMSQAHNP 380 (396)
T ss_dssp EEEESC----S-G-GGTTGGGGTCCEEECCSSCSCH-HHHHHT-SEEECTTCHHHHHHHHHHHHHC-HHHHHHHHTSCCT
T ss_pred EEEECC----c-c-HHHHHHHcCCCEEEccCCCcch-HHHHcC-ceEEcCCCHHHHHHHHHHHHcC-HHHHHHHhhccCC
Confidence 999988 2 3 348999999999998 677766 776666 5777766899999999999999 8999999877543
Q ss_pred H
Q 011355 449 R 449 (488)
Q Consensus 449 ~ 449 (488)
+
T Consensus 381 ~ 381 (396)
T 3dzc_A 381 Y 381 (396)
T ss_dssp T
T ss_pred C
Confidence 3
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.92 E-value=5.5e-24 Score=206.90 Aligned_cols=346 Identities=15% Similarity=0.098 Sum_probs=215.0
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCC----CCC-ceEEEecCCCCccCcc
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFPT----YPI-SSLYFHLSKPTAAGYL 146 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~----~~~-~~i~~~~~~~~~~~~~ 146 (488)
|++|||++++. ...+.-. +..++++|.+. |+++.++.+......... .+. +...+...........
T Consensus 25 m~~~kI~~v~G------tr~~~~~-~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v~~~~~~~~~ 97 (403)
T 3ot5_A 25 MAKIKVMSIFG------TRPEAIK-MAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAE 97 (403)
T ss_dssp -CCEEEEEEEC------SHHHHHH-HHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTTCCCSEECCCCC-CCCHHH
T ss_pred cccceEEEEEe------cChhHHH-HHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcCCCCCcccccCCCCCCHHH
Confidence 56689999996 3334444 47899999987 688876665532111000 111 1222222111110111
Q ss_pred hhHHHHHHHHHHhcCCCCCcEEEeCCcc---h---HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHH
Q 011355 147 DQSIVWQQLQTQNSTGKPFDVIHTESVG---L---RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAE 220 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~Dvv~~~~~~---~---~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (488)
........+.+..++. +||+|++++.. + ......++| ++....+...... + .++.....+
T Consensus 98 ~~~~~~~~l~~~l~~~-kPD~Vi~~gd~~~~l~~~laA~~~~IP-v~h~~aglrs~~~----------~--~~~p~~~~r 163 (403)
T 3ot5_A 98 ITSRVMNGINEVIAAE-NPDIVLVHGDTTTSFAAGLATFYQQKM-LGHVEAGLRTWNK----------Y--SPFPEEMNR 163 (403)
T ss_dssp HHHHHHHHHHHHHHHH-CCSEEEEETTCHHHHHHHHHHHHTTCE-EEEESCCCCCSCT----------T--SSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEEECCchhHHHHHHHHHHhCCC-EEEEECCcccccc----------c--cCCcHHHHH
Confidence 1233444444444444 89999998631 2 222334667 5543333211000 0 000011111
Q ss_pred HHHHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecC-CccCCCcCCCcccchhhhhhhCCCCCCcEEEEEE
Q 011355 221 RASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILN-GVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMA 299 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~n-gvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~ 299 (488)
.+ . -+.+|.++++|+..++.+.+ .|++++++.+++| ++|...+..........++++ .++++++++.
T Consensus 164 ~~---~-----~~~a~~~~~~se~~~~~l~~-~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l---~~~~~vlv~~ 231 (403)
T 3ot5_A 164 QL---T-----GVMADIHFSPTKQAKENLLA-EGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL---GDNRLILMTA 231 (403)
T ss_dssp HH---H-----HHHCSEEEESSHHHHHHHHH-TTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC---TTCEEEEECC
T ss_pred HH---H-----HHhcCEEECCCHHHHHHHHH-cCCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc---cCCCEEEEEe
Confidence 11 1 12368899999999999998 7999899999999 456543322222223455555 3444677777
Q ss_pred eeecc-ccChHHHHHHHHHhHhhccCCCCCeEEEEE-eCCC-chhHHhh-h--CCcEEEeCccCHHHHHHHHHhcCEEEe
Q 011355 300 GRLVK-DKGHPLMFEALKQLLAENDTFRRSTVFLVA-GDGP-WGARYRD-L--GTNVIVLGPLDQTRLAMFYNAIDIFVN 373 (488)
Q Consensus 300 Grl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-G~g~-~~~~~~~-l--~~~V~~~g~v~~~~l~~~~~~adv~v~ 373 (488)
||... .|+++.+++|+..+.++. |++++++. |.++ ..+.+++ + .++|.+.|+++.+++..+|+.||++|.
T Consensus 232 ~r~~~~~~~l~~ll~a~~~l~~~~----~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~ 307 (403)
T 3ot5_A 232 HRRENLGEPMQGMFEAVREIVESR----EDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFT 307 (403)
T ss_dssp CCHHHHTTHHHHHHHHHHHHHHHC----TTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEE
T ss_pred CcccccCcHHHHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEE
Confidence 77643 477899999999999888 89998887 4443 2344444 2 368999999999999999999999998
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEEe-CCCCcccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 011355 374 PTLRAQGLDHTVLEAMLSGKPLMAT-RLASIVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLN 452 (488)
Q Consensus 374 ps~~~eg~~~~~lEAma~G~PVI~~-~~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~ 452 (488)
+| |...+||+++|+|+|++ +.++.. +.+..| +|+++++|.+++++++.+++++ ++.+++|++++..+..
T Consensus 308 ~S------Gg~~~EA~a~g~PvV~~~~~~~~~-e~v~~g-~~~lv~~d~~~l~~ai~~ll~~-~~~~~~m~~~~~~~g~- 377 (403)
T 3ot5_A 308 DS------GGVQEEAPGMGVPVLVLRDTTERP-EGIEAG-TLKLIGTNKENLIKEALDLLDN-KESHDKMAQAANPYGD- 377 (403)
T ss_dssp CC------HHHHHHGGGTTCCEEECCSSCSCH-HHHHHT-SEEECCSCHHHHHHHHHHHHHC-HHHHHHHHHSCCTTCC-
T ss_pred CC------ccHHHHHHHhCCCEEEecCCCcch-hheeCC-cEEEcCCCHHHHHHHHHHHHcC-HHHHHHHHhhcCcccC-
Confidence 77 22448999999999998 677765 666544 8888877999999999999998 8888888876544432
Q ss_pred hCCHHHHHHHHHHH
Q 011355 453 LFTATKMAAAYERL 466 (488)
Q Consensus 453 ~fs~~~~~~~~~~~ 466 (488)
..+.+++++.+.++
T Consensus 378 ~~aa~rI~~~l~~~ 391 (403)
T 3ot5_A 378 GFAANRILAAIKSH 391 (403)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 23445555544443
No 32
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.91 E-value=1.7e-23 Score=205.61 Aligned_cols=344 Identities=13% Similarity=0.033 Sum_probs=216.2
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEec--------------C
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHL--------------S 138 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~--------------~ 138 (488)
...+|||++++. ..+|....+..++++|+++||+|++++...........+.+.+.+.. .
T Consensus 17 ~~~~MrIl~~~~------~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 3otg_A 17 EGRHMRVLFASL------GTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLGFEPVATGMPVFDGFLAALRIRFD 90 (412)
T ss_dssp -CCSCEEEEECC------SSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCCHHHHHHHHHHHHHS
T ss_pred ccceeEEEEEcC------CCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhcCCceeecCcccccchhhhhhhhhc
Confidence 346799999985 35777777889999999999999999975321100012222222221 0
Q ss_pred ---------CCCccCcchhHH------HHHHHHHHhcCCCCCcEEEeCCcchHH---hhhccCCcEEEeeeCCcchhhhh
Q 011355 139 ---------KPTAAGYLDQSI------VWQQLQTQNSTGKPFDVIHTESVGLRH---TRARNLTNVVVSWHGIAYETIHS 200 (488)
Q Consensus 139 ---------~~~~~~~~~~~~------~~~~~~~~~~~~~~~Dvv~~~~~~~~~---~~~~~~p~~v~~~h~~~~~~~~~ 200 (488)
............ ....+....++. +||+|+++...+.. ....++| ++...|+......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~pDvVv~~~~~~~~~~aa~~~giP-~v~~~~~~~~~~~-- 166 (412)
T 3otg_A 91 TDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERL-RPDLVVQEISNYGAGLAALKAGIP-TICHGVGRDTPDD-- 166 (412)
T ss_dssp CSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHH-CCSEEEEETTCHHHHHHHHHHTCC-EEEECCSCCCCSH--
T ss_pred ccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhc-CCCEEEECchhhHHHHHHHHcCCC-EEEecccccCchh--
Confidence 000000011111 113333333333 89999998643322 2345678 8887777532110
Q ss_pred hhhHhhhcCCCChhHHHHHHHHHHHHHHhh-------hcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcC
Q 011355 201 DIIQELLRTPEEPQAYALAERASKVVEEVK-------FFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFK 273 (488)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~ 273 (488)
....+...+.+...... ....+|.+++.++...+...+.... ....+.+.+.+..
T Consensus 167 -------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--- 228 (412)
T 3otg_A 167 -------------LTRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARP--RRHELRPVPFAEQ--- 228 (412)
T ss_dssp -------------HHHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCT--TEEECCCCCCCCC---
T ss_pred -------------hhHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCC--CcceeeccCCCCC---
Confidence 01222222333322211 1246788899888776665543322 1111112221110
Q ss_pred CCcccchhhhhhh--CCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEe-CCCchhHHhhhCCcE
Q 011355 274 PDVAMGKDFKKKF--GIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG-DGPWGARYRDLGTNV 350 (488)
Q Consensus 274 ~~~~~~~~~r~~~--~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG-~g~~~~~~~~l~~~V 350 (488)
.. +..+ ..++++++++++.|++. .++.+.+.+++..+.+ .+.++++++ ++...+.++++.++|
T Consensus 229 ------~~-~~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~------~~~~~~~~~g~~~~~~~l~~~~~~v 294 (412)
T 3otg_A 229 ------GD-LPAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAG------LDADVLVASGPSLDVSGLGEVPANV 294 (412)
T ss_dssp ------CC-CCGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHT------SSSEEEEECCSSCCCTTCCCCCTTE
T ss_pred ------CC-CCCccccccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHc------CCCEEEEEECCCCChhhhccCCCcE
Confidence 00 1111 12345557888999986 6777777777777754 245555554 444466666778899
Q ss_pred EEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC---CHHH
Q 011355 351 IVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP---QVES 423 (488)
Q Consensus 351 ~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~---d~~~ 423 (488)
.+.|+++ +.++|+.||++|.++ .+.+++|||++|+|+|+.+.++ .. +.+.+.+.|+++++ |+++
T Consensus 295 ~~~~~~~---~~~~l~~ad~~v~~~-----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~-~~v~~~g~g~~~~~~~~~~~~ 365 (412)
T 3otg_A 295 RLESWVP---QAALLPHVDLVVHHG-----GSGTTLGALGAGVPQLSFPWAGDSFANA-QAVAQAGAGDHLLPDNISPDS 365 (412)
T ss_dssp EEESCCC---HHHHGGGCSEEEESC-----CHHHHHHHHHHTCCEEECCCSTTHHHHH-HHHHHHTSEEECCGGGCCHHH
T ss_pred EEeCCCC---HHHHHhcCcEEEECC-----chHHHHHHHHhCCCEEecCCchhHHHHH-HHHHHcCCEEecCcccCCHHH
Confidence 9999983 789999999999754 2479999999999999987764 34 56778889999986 7899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 424 VKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 424 la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
++++|.++++| ++.+++|++.+++.... ++++.+++.+++++.+
T Consensus 366 l~~ai~~ll~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 366 VSGAAKRLLAE-ESYRAGARAVAAEIAAM-PGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHC-HHHHHHHHHHHHHHHHS-CCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHhcc
Confidence 99999999999 99999999999988765 7999999999888743
No 33
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.87 E-value=1.5e-20 Score=185.67 Aligned_cols=357 Identities=15% Similarity=0.121 Sum_probs=206.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCc--------cCcc
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTA--------AGYL 146 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~ 146 (488)
..|||++++. ..+|....+..++++|.++||+|++++...........+...+.+....+.. ....
T Consensus 6 ~m~kIl~~~~------~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (430)
T 2iyf_A 6 TPAHIAMFSI------AAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTLL 79 (430)
T ss_dssp --CEEEEECC------SCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHH
T ss_pred ccceEEEEeC------CCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhCCCEEEEcCCcCccccccccccchhhH
Confidence 3579999863 3467777789999999999999999997653211111222222222111100 0100
Q ss_pred h--------hHHHHHHHHHHhcCCCCCcEEEeCCcchH---HhhhccCCcEEEeeeCCcch-hhhh----hhhHhhhcCC
Q 011355 147 D--------QSIVWQQLQTQNSTGKPFDVIHTESVGLR---HTRARNLTNVVVSWHGIAYE-TIHS----DIIQELLRTP 210 (488)
Q Consensus 147 ~--------~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~---~~~~~~~p~~v~~~h~~~~~-~~~~----~~~~~~~~~~ 210 (488)
. .......+....+.. +||+|+++....+ .....++| .+...+..... .+.. .........
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~-~pD~Vi~d~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~- 156 (430)
T 2iyf_A 80 DNVEPFLNDAIQALPQLADAYADD-IPDLVLHDITSYPARVLARRWGVP-AVSLSPNLVAWKGYEEEVAEPMWREPRQT- 156 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-CCSEEEEETTCHHHHHHHHHHTCC-EEEEESSCCCCTTHHHHTHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEECCccHHHHHHHHHcCCC-EEEEecccccccccccccccchhhhhccc-
Confidence 0 011223333444444 8999998754322 22334678 77666554311 1100 000000000
Q ss_pred CChhHHHHHHHHHHHHHHh-------hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhh
Q 011355 211 EEPQAYALAERASKVVEEV-------KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFK 283 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~-------~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r 283 (488)
+....+...+.+..... .++..+|.+++.+....+.... .++..++..++++++......
T Consensus 157 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~v~~vG~~~~~~~~~~--------- 223 (430)
T 2iyf_A 157 --ERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHAD--RVDEDVYTFVGACQGDRAEEG--------- 223 (430)
T ss_dssp --HHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGG--GSCTTTEEECCCCC-----CC---------
T ss_pred --hHHHHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcc--cCCCccEEEeCCcCCCCCCCC---------
Confidence 00011112222222210 1222568888887665443322 222222777776654321000
Q ss_pred hhhCC-CCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEE-EEEeCCCchhHHhhhCCcEEEeCccCHHHH
Q 011355 284 KKFGI-PENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVF-LVAGDGPWGARYRDLGTNVIVLGPLDQTRL 361 (488)
Q Consensus 284 ~~~~i-~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l-~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l 361 (488)
.+.. .++++++++++|++. .++.+.+.+++..+.+ . +++++ +++|+++..+.++++.++|.+.|++++.
T Consensus 224 -~~~~~~~~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~-~----~~~~~~~~~G~~~~~~~l~~~~~~v~~~~~~~~~-- 294 (430)
T 2iyf_A 224 -GWQRPAGAEKVVLVSLGSAF-TKQPAFYRECVRAFGN-L----PGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQL-- 294 (430)
T ss_dssp -CCCCCTTCSEEEEEECTTTC-C-CHHHHHHHHHHHTT-C----TTEEEEEECC---CGGGGCSCCTTEEEESSCCHH--
T ss_pred -CCccccCCCCeEEEEcCCCC-CCcHHHHHHHHHHHhc-C----CCeEEEEEeCCCCChHHhccCCCCeEEEecCCHH--
Confidence 0111 134447888999987 5555554444444432 2 46777 5789887666666677899999999844
Q ss_pred HHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC---CHHHHHHHHHHHHhc
Q 011355 362 AMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP---QVESVKKALYGIWAD 434 (488)
Q Consensus 362 ~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~ 434 (488)
++|+.||++|..+ | .++++|||++|+|+|+.+.++ .. +.+.+.+.|+.++. |.++++++|.++++|
T Consensus 295 -~~l~~ad~~v~~~----G-~~t~~Ea~~~G~P~i~~p~~~~q~~~a-~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 367 (430)
T 2iyf_A 295 -AILRQADLFVTHA----G-AGGSQEGLATATPMIAVPQAVDQFGNA-DMLQGLGVARKLATEEATADLLRETALALVDD 367 (430)
T ss_dssp -HHHTTCSEEEECC----C-HHHHHHHHHTTCCEEECCCSHHHHHHH-HHHHHTTSEEECCCC-CCHHHHHHHHHHHHHC
T ss_pred -HHhhccCEEEECC----C-ccHHHHHHHhCCCEEECCCccchHHHH-HHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcC
Confidence 7899999999744 2 379999999999999998765 23 45677788999875 789999999999998
Q ss_pred CHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Q 011355 435 GREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCIS 471 (488)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 471 (488)
++.++++++.+++.... ++++++++.+++++++..
T Consensus 368 -~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 368 -PEVARRLRRIQAEMAQE-GGTRRAADLIEAELPARH 402 (430)
T ss_dssp -HHHHHHHHHHHHHHHHH-CHHHHHHHHHHTTSCC--
T ss_pred -HHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHhhccc
Confidence 88899999998887755 689998888887776543
No 34
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.87 E-value=2.8e-20 Score=178.80 Aligned_cols=326 Identities=17% Similarity=0.132 Sum_probs=197.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC--CCCCCCceEEEecCC-------CCccCcch
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS--FPTYPISSLYFHLSK-------PTAAGYLD 147 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~~~~~~~~i~~~~~~-------~~~~~~~~ 147 (488)
.||++... ..||.-.-+..++++|.++||+|.+++....-.. ....+.+...+.... ......+.
T Consensus 3 ~~i~i~~G------GTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 76 (365)
T 3s2u_A 3 GNVLIMAG------GTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLE 76 (365)
T ss_dssp CEEEEECC------SSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHH
T ss_pred CcEEEEcC------CCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHH
Confidence 47887663 4577767788999999999999999986542110 011122221111110 00111222
Q ss_pred hHHHHHHHHHHhcCCCCCcEEEeCCcc--hH---HhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHH
Q 011355 148 QSIVWQQLQTQNSTGKPFDVIHTESVG--LR---HTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERA 222 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~Dvv~~~~~~--~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
....+.+..+..++. +||+|+..... .+ .....++| ++..-.+. .++ . .
T Consensus 77 ~~~~~~~~~~~l~~~-~PDvVi~~g~~~s~p~~laA~~~~iP-~vihe~n~---------------~~G-----~----~ 130 (365)
T 3s2u_A 77 LLKSLFQALRVIRQL-RPVCVLGLGGYVTGPGGLAARLNGVP-LVIHEQNA---------------VAG-----T----A 130 (365)
T ss_dssp HHHHHHHHHHHHHHH-CCSEEEECSSSTHHHHHHHHHHTTCC-EEEEECSS---------------SCC-----H----H
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEcCCcchHHHHHHHHHcCCC-EEEEecch---------------hhh-----h----H
Confidence 233333333333333 89999987532 22 22334667 55322221 111 0 1
Q ss_pred HHHHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 223 SKVVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 223 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
.++ ..+.++.+....+.. + ....++.+++|++..+.+... +.+.+++++++.++++.|+.
T Consensus 131 nr~-----l~~~a~~v~~~~~~~-------~-~~~~k~~~~g~pvr~~~~~~~-------~~~~~~~~~~~~ilv~gGs~ 190 (365)
T 3s2u_A 131 NRS-----LAPIARRVCEAFPDT-------F-PASDKRLTTGNPVRGELFLDA-------HARAPLTGRRVNLLVLGGSL 190 (365)
T ss_dssp HHH-----HGGGCSEEEESSTTS-------S-CC---CEECCCCCCGGGCCCT-------TSSCCCTTSCCEEEECCTTT
T ss_pred HHh-----hccccceeeeccccc-------c-cCcCcEEEECCCCchhhccch-------hhhcccCCCCcEEEEECCcC
Confidence 111 123466666554432 1 134577788888876554332 22344556665677777888
Q ss_pred ccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch---hHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCC
Q 011355 303 VKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG---ARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQ 379 (488)
Q Consensus 303 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~---~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~e 379 (488)
...+..+.+.+++..+..+. ....++++|.+... +.++++..++.+.|+++ ++.++|+.||++|. + .
T Consensus 191 g~~~~~~~~~~al~~l~~~~----~~~vi~~~G~~~~~~~~~~~~~~~~~~~v~~f~~--dm~~~l~~aDlvI~---r-a 260 (365)
T 3s2u_A 191 GAEPLNKLLPEALAQVPLEI----RPAIRHQAGRQHAEITAERYRTVAVEADVAPFIS--DMAAAYAWADLVIC---R-A 260 (365)
T ss_dssp TCSHHHHHHHHHHHTSCTTT----CCEEEEECCTTTHHHHHHHHHHTTCCCEEESCCS--CHHHHHHHCSEEEE---C-C
T ss_pred CccccchhhHHHHHhccccc----ceEEEEecCccccccccceecccccccccccchh--hhhhhhccceEEEe---c-C
Confidence 88877788888888876543 23334556665433 33445677899999976 99999999999996 2 2
Q ss_pred CCChHHHHHHHcCCcEEEeCCCCccc-------ceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011355 380 GLDHTVLEAMLSGKPLMATRLASIVG-------SVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKKGLVARKR 449 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~~~~~~-------e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~a~~~ 449 (488)
| ++++.|+|++|+|+|..+.+...+ +.+.+.+.|++++. ++++|+++|.++++| ++.+++|++++++.
T Consensus 261 G-~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d-~~~~~~m~~~a~~~ 338 (365)
T 3s2u_A 261 G-ALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMH-PETLRSMADQARSL 338 (365)
T ss_dssp C-HHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC-THHHHHHHHHHHHT
T ss_pred C-cchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHhc
Confidence 3 689999999999999887664321 24566778888875 589999999999999 99999999999987
Q ss_pred HhhhCCHHHHHHHHHHHH
Q 011355 450 GLNLFTATKMAAAYERLF 467 (488)
Q Consensus 450 ~~~~fs~~~~~~~~~~~~ 467 (488)
... ...+.+++.++++.
T Consensus 339 ~~~-~aa~~ia~~i~~la 355 (365)
T 3s2u_A 339 AKP-EATRTVVDACLEVA 355 (365)
T ss_dssp CCT-THHHHHHHHHHHHC
T ss_pred CCc-cHHHHHHHHHHHHH
Confidence 654 34555555555443
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.86 E-value=1.3e-21 Score=191.21 Aligned_cols=338 Identities=15% Similarity=0.081 Sum_probs=180.6
Q ss_pred CCCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecC-------------
Q 011355 72 PPLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLS------------- 138 (488)
Q Consensus 72 ~~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~------------- 138 (488)
....+|||++++. ...|....+..|+++|+++||+|++++...........+...+.+...
T Consensus 11 ~~~~~MrIl~~~~------~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
T 4fzr_A 11 PRGSHMRILVIAG------CSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREG 84 (398)
T ss_dssp ----CCEEEEECC------SSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTS
T ss_pred CCCCceEEEEEcC------CCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccC
Confidence 3446799999985 245666677899999999999999999743211111123333333210
Q ss_pred CCCc--cCc---c-hh--------HHHHHHHHHHhcCCCCCcEEEeCCcchHH---hhhccCCcEEEeeeCCcchhhhhh
Q 011355 139 KPTA--AGY---L-DQ--------SIVWQQLQTQNSTGKPFDVIHTESVGLRH---TRARNLTNVVVSWHGIAYETIHSD 201 (488)
Q Consensus 139 ~~~~--~~~---~-~~--------~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~---~~~~~~p~~v~~~h~~~~~~~~~~ 201 (488)
.+.. ... . .. ......+....+.. +||+|+++...+.. ....++| ++...|+..... .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pDlVv~d~~~~~~~~~a~~~giP-~v~~~~~~~~~~---~ 159 (398)
T 4fzr_A 85 NRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERW-KPDLVLTETYSLTGPLVAATLGIP-WIEQSIRLASPE---L 159 (398)
T ss_dssp CBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCSEEEEETTCTHHHHHHHHHTCC-EEEECCSSCCCH---H
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECccccHHHHHHHhhCCC-EEEeccCCCCch---h
Confidence 0000 000 0 00 01112233333333 89999987543322 2345678 888887753221 0
Q ss_pred hhHhhhcCCCChhHHHHHHHHHHHHHHh--hhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccc
Q 011355 202 IIQELLRTPEEPQAYALAERASKVVEEV--KFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMG 279 (488)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~ 279 (488)
.. ......+.+..... ..+...+..+..+....+.... .....+..++... ..
T Consensus 160 ~~------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~--- 214 (398)
T 4fzr_A 160 IK------------SAGVGELAPELAELGLTDFPDPLLSIDVCPPSMEAQPK---PGTTKMRYVPYNG-------RN--- 214 (398)
T ss_dssp HH------------HHHHHHTHHHHHTTTCSSCCCCSEEEECSCGGGC-------CCCEECCCCCCCC-------SS---
T ss_pred hh------------HHHHHHHHHHHHHcCCCCCCCCCeEEEeCChhhCCCCC---CCCCCeeeeCCCC-------CC---
Confidence 00 11112222222111 1122334455544432221111 0001111111100 00
Q ss_pred hhhhhhhCCCCCCcEEEEEEeeecccc----------ChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCc
Q 011355 280 KDFKKKFGIPENRSLVLGMAGRLVKDK----------GHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTN 349 (488)
Q Consensus 280 ~~~r~~~~i~~~~~~~i~~~Grl~~~K----------g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~ 349 (488)
..+.+.+..+++++.+++++|++...| .+..+++++.. .+++++++++++..+.++++.++
T Consensus 215 ~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~---------~~~~~v~~~~~~~~~~l~~~~~~ 285 (398)
T 4fzr_A 215 DQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK---------LGFEVVVAVSDKLAQTLQPLPEG 285 (398)
T ss_dssp CCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGGG---------GTCEEEECCCC--------CCTT
T ss_pred CCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHh---------CCCEEEEEeCCcchhhhccCCCc
Confidence 111111111234457888999997555 34444444433 25788888877766667778899
Q ss_pred EEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCC----CcccceeecCCceeEeCC---CHH
Q 011355 350 VIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLA----SIVGSVIVGTDMGYLFSP---QVE 422 (488)
Q Consensus 350 V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~----~~~~e~v~~~~~g~l~~~---d~~ 422 (488)
|.+.|+++ +.+++..||++|.. |.+.+++|||++|+|+|+.... +.. +.+.+.+.|+++++ |.+
T Consensus 286 v~~~~~~~---~~~ll~~ad~~v~~-----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a-~~~~~~g~g~~~~~~~~~~~ 356 (398)
T 4fzr_A 286 VLAAGQFP---LSAIMPACDVVVHH-----GGHGTTLTCLSEGVPQVSVPVIAEVWDSA-RLLHAAGAGVEVPWEQAGVE 356 (398)
T ss_dssp EEEESCCC---HHHHGGGCSEEEEC-----CCHHHHHHHHHTTCCEEECCCSGGGHHHH-HHHHHTTSEEECC-------
T ss_pred EEEeCcCC---HHHHHhhCCEEEec-----CCHHHHHHHHHhCCCEEecCCchhHHHHH-HHHHHcCCEEecCcccCCHH
Confidence 99999986 56788899999962 3367999999999999996554 333 56778889999985 688
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHH
Q 011355 423 SVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYER 465 (488)
Q Consensus 423 ~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 465 (488)
+++++|.++++| ++.+++|++.+++.... .+++.+++.+++
T Consensus 357 ~l~~ai~~ll~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 397 (398)
T 4fzr_A 357 SVLAACARIRDD-SSYVGNARRLAAEMATL-PTPADIVRLIEQ 397 (398)
T ss_dssp CHHHHHHHHHHC-THHHHHHHHHHHHHTTS-CCHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-HHHHHHHHHHHHHHHcC-CCHHHHHHHHhc
Confidence 999999999999 89999999998888755 799998887653
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.85 E-value=3.3e-20 Score=180.87 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=128.0
Q ss_pred CCCcEEEEEEeeeccccCh-HHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhc
Q 011355 290 ENRSLVLGMAGRLVKDKGH-PLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAI 368 (488)
Q Consensus 290 ~~~~~~i~~~Grl~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a 368 (488)
++++.++++.|+....|+. ..+++++.+. .+. |+++++++|+++..+.+..+.++|.+.|+++..+ ++..|
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~----p~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~~~~---ll~~a 287 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-TEL----PGVEAVIAVPPEHRALLTDLPDNARIAESVPLNL---FLRTC 287 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTS----TTEEEEEECCGGGGGGCTTCCTTEEECCSCCGGG---TGGGC
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccC----CCeEEEEEECCcchhhcccCCCCEEEeccCCHHH---HHhhC
Confidence 4555788888998775554 7777777777 666 7999999988776666667778999999987654 55999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC-----CHHHHHHHHHHHHhcCHHHH
Q 011355 369 DIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP-----QVESVKKALYGIWADGREVL 439 (488)
Q Consensus 369 dv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~-----d~~~la~~i~~ll~~~~~~~ 439 (488)
|++|.. |.+.+++|||++|+|+|+....+ .. +.+.+.+.|.++++ |.+++++++.++++| ++.+
T Consensus 288 d~~v~~-----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a-~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~-~~~~ 360 (391)
T 3tsa_A 288 ELVICA-----GGSGTAFTATRLGIPQLVLPQYFDQFDYA-RNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGD-TGFA 360 (391)
T ss_dssp SEEEEC-----CCHHHHHHHHHTTCCEEECCCSTTHHHHH-HHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTC-THHH
T ss_pred CEEEeC-----CCHHHHHHHHHhCCCEEecCCcccHHHHH-HHHHHcCCEEecCcccccCCHHHHHHHHHHHHcC-HHHH
Confidence 999963 33469999999999999965533 33 45777889999874 699999999999999 8899
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 440 EKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 440 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
++|++.+++.... .+++.+++.++++..
T Consensus 361 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 361 AAAIKLSDEITAM-PHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHHHHHTS-CCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 9999888887755 699998888776543
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.83 E-value=5.8e-19 Score=172.69 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=201.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCC------cc--Ccch-
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPT------AA--GYLD- 147 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~------~~--~~~~- 147 (488)
|||++++. ...|.-..+..|+++|+++||+|++++...........+.....+....+. .. ....
T Consensus 5 ~~il~~~~------~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (402)
T 3ia7_A 5 RHILFANV------QGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQ 78 (402)
T ss_dssp CEEEEECC------SSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHH
T ss_pred CEEEEEeC------CCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcCCEEEecccccccccccccccccchHHH
Confidence 49999885 346777888899999999999999999643111111112222222110000 00 0000
Q ss_pred ----hH----HHHHHHHHHhcCCCCCcEEEeC-CcchH---HhhhccCCcEEEeeeCCcchhhhhh---hhHhhhcCCCC
Q 011355 148 ----QS----IVWQQLQTQNSTGKPFDVIHTE-SVGLR---HTRARNLTNVVVSWHGIAYETIHSD---IIQELLRTPEE 212 (488)
Q Consensus 148 ----~~----~~~~~~~~~~~~~~~~Dvv~~~-~~~~~---~~~~~~~p~~v~~~h~~~~~~~~~~---~~~~~~~~~~~ 212 (488)
.. .....+....... +||+|+++ ..... .....++| ++...|+......... ..... . ...
T Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~-~pD~Vi~d~~~~~~~~~aA~~~giP-~v~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 154 (402)
T 3ia7_A 79 LHLVYVRENVAILRAAEEALGDN-PPDLVVYDVFPFIAGRLLAARWDRP-AVRLTGGFAANEHYSLFKELWKSN-G-QRH 154 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-CCSEEEEESTTHHHHHHHHHHHTCC-EEEEESSCCCBTTBCHHHHHHHHH-T-CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCEEEECchHHHHHHHHHHhhCCC-EEEEecccccCccccccccccccc-c-ccC
Confidence 00 1123334444444 89999998 43322 22345778 7777766543211111 00000 0 111
Q ss_pred h-hHHHHHHHHHHHHHHh-------hhcCCc-cEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhh
Q 011355 213 P-QAYALAERASKVVEEV-------KFFPKY-AHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFK 283 (488)
Q Consensus 213 ~-~~~~~~~~~~~~~~~~-------~~~~~~-d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r 283 (488)
+ ....+...+.+..... .+.... |..++......+.....+ ..++..+++.++........
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~~------- 224 (402)
T 3ia7_A 155 PADVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETF---DERFAFVGPTLTGRDGQPGW------- 224 (402)
T ss_dssp GGGSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGC---CTTEEECCCCCCC----CCC-------
T ss_pred hhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccC---CCCeEEeCCCCCCcccCCCC-------
Confidence 1 1112222222222111 111122 556666554443332211 23466665443221100000
Q ss_pred hhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEE-EEeCCCchhHHhhhCCcEEEeCccCHHHHH
Q 011355 284 KKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFL-VAGDGPWGARYRDLGTNVIVLGPLDQTRLA 362 (488)
Q Consensus 284 ~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~-ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~ 362 (488)
....++++.++++.|+....+. +.+.+.+..+. +. + ++++ ++|++...+.++++.++|.+.|++++.
T Consensus 225 --~~~~~~~~~v~v~~G~~~~~~~-~~~~~~~~~~~-~~----~-~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~--- 292 (402)
T 3ia7_A 225 --QPPRPDAPVLLVSLGNQFNEHP-EFFRACAQAFA-DT----P-WHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFH--- 292 (402)
T ss_dssp --CCSSTTCCEEEEECCSCSSCCH-HHHHHHHHHHT-TS----S-CEEEEECCTTSCGGGGCSCCTTEEEESCCCHH---
T ss_pred --cccCCCCCEEEEECCCCCcchH-HHHHHHHHHHh-cC----C-cEEEEEeCCcCChhhhCCCCCcEEEecCCCHH---
Confidence 0012344578889999865542 23333333332 22 3 4544 467766666677778899999998844
Q ss_pred HHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCC-C----CcccceeecCCceeEeCC---CHHHHHHHHHHHHhc
Q 011355 363 MFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRL-A----SIVGSVIVGTDMGYLFSP---QVESVKKALYGIWAD 434 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~-~----~~~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~ 434 (488)
++|..||++|..+ | ..+++|||++|+|+|+... . +.. +.+.+.+.|..++. +.+++++++.++++|
T Consensus 293 ~ll~~ad~~v~~~----G-~~t~~Ea~~~G~P~v~~p~~~~~q~~~a-~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~ 366 (402)
T 3ia7_A 293 SVLAHARACLTHG----T-TGAVLEAFAAGVPLVLVPHFATEAAPSA-ERVIELGLGSVLRPDQLEPASIREAVERLAAD 366 (402)
T ss_dssp HHHTTEEEEEECC----C-HHHHHHHHHTTCCEEECGGGCGGGHHHH-HHHHHTTSEEECCGGGCSHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECC----C-HHHHHHHHHhCCCEEEeCCCcccHHHHH-HHHHHcCCEEEccCCCCCHHHHHHHHHHHHcC
Confidence 8999999999744 2 3688999999999997654 2 333 56678889999885 789999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 435 GREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
++.++++++.+.+.... .+++.+++.+++++.+
T Consensus 367 -~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 367 -SAVRERVRRMQRDILSS-GGPARAADEVEAYLGR 399 (402)
T ss_dssp -HHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhC-ChHHHHHHHHHHHHhh
Confidence 88889988888777644 7899999988888754
No 38
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.82 E-value=1.9e-19 Score=173.22 Aligned_cols=344 Identities=12% Similarity=0.054 Sum_probs=211.8
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC-C-----CCCCCCceEEEecCCCCccCcchhH
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC-S-----FPTYPISSLYFHLSKPTAAGYLDQS 149 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~-----~~~~~~~~i~~~~~~~~~~~~~~~~ 149 (488)
.+|+++++..=| . -.-+..++++|.+. +++.++.+..... . ....+++...+..............
T Consensus 9 ~~~~~~v~GtRp------e-~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 80 (385)
T 4hwg_A 9 MLKVMTIVGTRP------E-LIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIG 80 (385)
T ss_dssp CCEEEEEECSHH------H-HHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHH
T ss_pred hhheeEEEEcCH------h-HHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHH
Confidence 468888885211 1 23456888999887 8877776653211 0 0112222122222211111122223
Q ss_pred HHHHHHHHHhcCCCCCcEEEeCCc---ch--HHhhhccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHH
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTESV---GL--RHTRARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASK 224 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~~~---~~--~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (488)
.....+....++. +||+|++++. .+ ......++| ++....+.... ..++.....+.+.
T Consensus 81 ~~~~~l~~~l~~~-kPD~Vlv~gd~~~~~aalaA~~~~IP-v~h~eaglrs~--------------~~~~pee~nR~~~- 143 (385)
T 4hwg_A 81 LVIEKVDEVLEKE-KPDAVLFYGDTNSCLSAIAAKRRKIP-IFHMEAGNRCF--------------DQRVPEEINRKII- 143 (385)
T ss_dssp HHHHHHHHHHHHH-CCSEEEEESCSGGGGGHHHHHHTTCC-EEEESCCCCCS--------------CTTSTHHHHHHHH-
T ss_pred HHHHHHHHHHHhc-CCcEEEEECCchHHHHHHHHHHhCCC-EEEEeCCCccc--------------cccCcHHHHHHHH-
Confidence 3444444444444 8999999751 12 222335678 65544443110 0000011111111
Q ss_pred HHHHhhhcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCC-ccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeec
Q 011355 225 VVEEVKFFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNG-VDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLV 303 (488)
Q Consensus 225 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ng-vd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~ 303 (488)
. +.+|.+++.++..++.+.+ .|++++++.+++|. +|...+......+..+++++|+++++ +++++.||..
T Consensus 144 --~-----~~a~~~~~~te~~~~~l~~-~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~-~iLvt~hr~e 214 (385)
T 4hwg_A 144 --D-----HISDVNITLTEHARRYLIA-EGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQ-YFLISSHREE 214 (385)
T ss_dssp --H-----HHCSEEEESSHHHHHHHHH-TTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTS-EEEEEECCC-
T ss_pred --H-----hhhceeecCCHHHHHHHHH-cCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCC-EEEEEeCCch
Confidence 1 2378889999999999988 79998999999985 45432221222346788999997754 7777777643
Q ss_pred ---cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh------CCcEEEeCccCHHHHHHHHHhcCEEEeC
Q 011355 304 ---KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL------GTNVIVLGPLDQTRLAMFYNAIDIFVNP 374 (488)
Q Consensus 304 ---~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~l~~~~~~adv~v~p 374 (488)
..|+++.+++|+..+.++. ++.+++.......+.+++. .++|.+.+.++..++..+|+.||+++.+
T Consensus 215 ~~~~~~~l~~ll~al~~l~~~~-----~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~ 289 (385)
T 4hwg_A 215 NVDVKNNLKELLNSLQMLIKEY-----NFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSD 289 (385)
T ss_dssp ----CHHHHHHHHHHHHHHHHH-----CCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEEC
T ss_pred hcCcHHHHHHHHHHHHHHHhcC-----CeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEEC
Confidence 3478899999999987643 4566654432233444443 2689999999999999999999999965
Q ss_pred CCCCCCCChHHHHHHHcCCcEEEeCCCC-cccceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-Hhh
Q 011355 375 TLRAQGLDHTVLEAMLSGKPLMATRLAS-IVGSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKR-GLN 452 (488)
Q Consensus 375 s~~~eg~~~~~lEAma~G~PVI~~~~~~-~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~-~~~ 452 (488)
| |....||+++|+|+|+.+... .+ |.+..| ++.++..|.+++++++.+++++ ++.++.|++++..+ ...
T Consensus 290 S------Ggv~~EA~alG~Pvv~~~~~ter~-e~v~~G-~~~lv~~d~~~i~~ai~~ll~d-~~~~~~m~~~~~~~~g~g 360 (385)
T 4hwg_A 290 S------GTITEEASILNLPALNIREAHERP-EGMDAG-TLIMSGFKAERVLQAVKTITEE-HDNNKRTQGLVPDYNEAG 360 (385)
T ss_dssp C------TTHHHHHHHTTCCEEECSSSCSCT-HHHHHT-CCEECCSSHHHHHHHHHHHHTT-CBTTBCCSCCCHHHHTCC
T ss_pred C------ccHHHHHHHcCCCEEEcCCCccch-hhhhcC-ceEEcCCCHHHHHHHHHHHHhC-hHHHHHhhccCCCCCCCC
Confidence 5 236799999999999986543 34 555544 7778766999999999999998 76666666555544 322
Q ss_pred hCCHHHHHHHHHHHHH
Q 011355 453 LFTATKMAAAYERLFL 468 (488)
Q Consensus 453 ~fs~~~~~~~~~~~~~ 468 (488)
.+.+++++.+.+.+.
T Consensus 361 -~aa~rI~~~l~~~~~ 375 (385)
T 4hwg_A 361 -LVSKKILRIVLSYVD 375 (385)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhh
Confidence 356666666666543
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.81 E-value=4.1e-18 Score=167.40 Aligned_cols=355 Identities=14% Similarity=0.103 Sum_probs=200.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCcc--------Ccc
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAA--------GYL 146 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~ 146 (488)
++|||++++. ...|.-..+..++++|+++||+|++++...........+.....+....+... ...
T Consensus 19 ~m~rIl~~~~------~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (415)
T 3rsc_A 19 HMAHLLIVNV------ASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVPYQSEIIDADAAEVFGSDDLG 92 (415)
T ss_dssp CCCEEEEECC------SCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSC
T ss_pred cCCEEEEEeC------CCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhcCCEEEeccccccccccchhhccccHH
Confidence 4689999985 34677777889999999999999999964321111112222222221111000 000
Q ss_pred h-----h----HHHHHHHHHHhcCCCCCcEEEeC-CcchH---HhhhccCCcEEEeeeCCcchhhhh---hhhHhhhcCC
Q 011355 147 D-----Q----SIVWQQLQTQNSTGKPFDVIHTE-SVGLR---HTRARNLTNVVVSWHGIAYETIHS---DIIQELLRTP 210 (488)
Q Consensus 147 ~-----~----~~~~~~~~~~~~~~~~~Dvv~~~-~~~~~---~~~~~~~p~~v~~~h~~~~~~~~~---~~~~~~~~~~ 210 (488)
. . ......+....+.. +||+|+++ ..... .....++| .+...++........ ...... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~l~~~-~PDlVi~d~~~~~~~~~aA~~~giP-~v~~~~~~~~~~~~~~~~~~~~~~--~~ 168 (415)
T 3rsc_A 93 VRPHLMYLRENVSVLRATAEALDGD-VPDLVLYDDFPFIAGQLLAARWRRP-AVRLSAAFASNEHYSFSQDMVTLA--GT 168 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSS-CCSEEEEESTTHHHHHHHHHHTTCC-EEEEESSCCCCSSCCHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCEEEECchhhhHHHHHHHHhCCC-EEEEEecccccCcccccccccccc--cc
Confidence 0 0 11123334444444 89999987 33322 23345678 777776654321111 111110 01
Q ss_pred CCh-hHHHHHHHHHHHHHHh-------hhcCC-ccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchh
Q 011355 211 EEP-QAYALAERASKVVEEV-------KFFPK-YAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKD 281 (488)
Q Consensus 211 ~~~-~~~~~~~~~~~~~~~~-------~~~~~-~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~ 281 (488)
..+ ........+.+..... .+... .|..++......+...... +.++..+++.+.... .
T Consensus 169 ~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~vGp~~~~~~-----~---- 236 (415)
T 3rsc_A 169 IDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTF---DDRFVFVGPCFDDRR-----F---- 236 (415)
T ss_dssp CCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGC---CTTEEECCCCCCCCG-----G----
T ss_pred CChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccC---CCceEEeCCCCCCcc-----c----
Confidence 111 1122222222222111 01111 2556665544433322211 234555433222110 0
Q ss_pred hhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEE-EeCCCchhHHhhhCCcEEEeCccCHHH
Q 011355 282 FKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLV-AGDGPWGARYRDLGTNVIVLGPLDQTR 360 (488)
Q Consensus 282 ~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~i-vG~g~~~~~~~~l~~~V~~~g~v~~~~ 360 (488)
..+.....++++.++++.|+.....+ + +++.+.+...+. + +++++ +|++...+.++++.++|.+.|+++..
T Consensus 237 ~~~~~~~~~~~~~v~v~~Gs~~~~~~-~-~~~~~~~al~~~----~-~~~v~~~g~~~~~~~l~~~~~~v~~~~~~~~~- 308 (415)
T 3rsc_A 237 LGEWTRPADDLPVVLVSLGTTFNDRP-G-FFRDCARAFDGQ----P-WHVVMTLGGQVDPAALGDLPPNVEAHRWVPHV- 308 (415)
T ss_dssp GCCCCCCSSCCCEEEEECTTTSCCCH-H-HHHHHHHHHTTS----S-CEEEEECTTTSCGGGGCCCCTTEEEESCCCHH-
T ss_pred CcCccccCCCCCEEEEECCCCCCChH-H-HHHHHHHHHhcC----C-cEEEEEeCCCCChHHhcCCCCcEEEEecCCHH-
Confidence 00000112345578888898754432 2 233332222333 4 66666 67766666677778899999999844
Q ss_pred HHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC---CHHHHHHHHHHHHh
Q 011355 361 LAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP---QVESVKKALYGIWA 433 (488)
Q Consensus 361 l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~ 433 (488)
+++..||++|..+ | ..+++|||++|+|+|+....+ .. +.+.+.+.|..++. +.++++++|.++++
T Consensus 309 --~ll~~ad~~v~~~----G-~~t~~Ea~~~G~P~v~~p~~~~q~~~a-~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~ 380 (415)
T 3rsc_A 309 --KVLEQATVCVTHG----G-MGTLMEALYWGRPLVVVPQSFDVQPMA-RRVDQLGLGAVLPGEKADGDTLLAAVGAVAA 380 (415)
T ss_dssp --HHHHHEEEEEESC----C-HHHHHHHHHTTCCEEECCCSGGGHHHH-HHHHHHTCEEECCGGGCCHHHHHHHHHHHHT
T ss_pred --HHHhhCCEEEECC----c-HHHHHHHHHhCCCEEEeCCcchHHHHH-HHHHHcCCEEEcccCCCCHHHHHHHHHHHHc
Confidence 8899999999743 2 368999999999999965433 23 45666788888875 78999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 434 DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
| ++.++++++.+.+.... .+.+.+++.+++++.+
T Consensus 381 ~-~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 381 D-PALLARVEAMRGHVRRA-GGAARAADAVEAYLAR 414 (415)
T ss_dssp C-HHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Confidence 9 88888888887777654 6888888888887653
No 40
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.79 E-value=5.3e-18 Score=165.57 Aligned_cols=158 Identities=14% Similarity=0.061 Sum_probs=118.4
Q ss_pred CCCcEEEEEEeeeccc-cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhc
Q 011355 290 ENRSLVLGMAGRLVKD-KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAI 368 (488)
Q Consensus 290 ~~~~~~i~~~Grl~~~-Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a 368 (488)
++++.+++++|++... ++.+.+.++++.+.+ .+++++++|+++..+.++.+.++|.+.|+++ +.++|..|
T Consensus 230 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~------~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~~---~~~ll~~a 300 (398)
T 3oti_A 230 PARPEVAITMGTIELQAFGIGAVEPIIAAAGE------VDADFVLALGDLDISPLGTLPRNVRAVGWTP---LHTLLRTC 300 (398)
T ss_dssp CSSCEEEECCTTTHHHHHCGGGHHHHHHHHHT------SSSEEEEECTTSCCGGGCSCCTTEEEESSCC---HHHHHTTC
T ss_pred CCCCEEEEEcCCCccccCcHHHHHHHHHHHHc------CCCEEEEEECCcChhhhccCCCcEEEEccCC---HHHHHhhC
Confidence 4455888899999665 466666666666654 3578888888776666777789999999985 45678899
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEEeCC----CCccc-ceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHH
Q 011355 369 DIFVNPTLRAQGLDHTVLEAMLSGKPLMATRL----ASIVG-SVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLE 440 (488)
Q Consensus 369 dv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~----~~~~~-e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~ 440 (488)
|++|.. |.+.+++|||++|+|+|+... .+... +.+.+.+.|+.+++ +.+.++ ++++| ++.++
T Consensus 301 d~~v~~-----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~-~~~~~ 370 (398)
T 3oti_A 301 TAVVHH-----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGD-ESLRT 370 (398)
T ss_dssp SEEEEC-----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHC-HHHHH
T ss_pred CEEEEC-----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcC-HHHHH
Confidence 999963 335699999999999999543 34320 45566788999875 345554 88888 99999
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 011355 441 KKGLVARKRGLNLFTATKMAAAYERLF 467 (488)
Q Consensus 441 ~~~~~a~~~~~~~fs~~~~~~~~~~~~ 467 (488)
+|++.+++.... .+++.+++.++++.
T Consensus 371 ~~~~~~~~~~~~-~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 371 AAREVREEMVAL-PTPAETVRRIVERI 396 (398)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHh
Confidence 998888887755 79999999887765
No 41
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.77 E-value=2.6e-17 Score=159.90 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=119.1
Q ss_pred CCcEEEEEEeeeccc-------cChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHH
Q 011355 291 NRSLVLGMAGRLVKD-------KGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAM 363 (488)
Q Consensus 291 ~~~~~i~~~Grl~~~-------Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~ 363 (488)
+++.+++++|++... +.+..+++++..+ +++++++++++..+.++.+.++|.+ |+++. .+
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---------~~~~~~~~g~~~~~~l~~~~~~v~~-~~~~~---~~ 275 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---------DVELIVAAPDTVAEALRAEVPQARV-GWTPL---DV 275 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---------TCEEEEECCHHHHHHHHHHCTTSEE-ECCCH---HH
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhcC---------CcEEEEEeCCCCHHhhCCCCCceEE-cCCCH---HH
Confidence 344788899998765 5566666666432 5677776544444555567789999 99874 45
Q ss_pred HHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC---CHHHHHHHHHHHHhcCH
Q 011355 364 FYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP---QVESVKKALYGIWADGR 436 (488)
Q Consensus 364 ~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~ 436 (488)
+|..||++|..+ | +++++|||++|+|+|+.+..+ .. +.+.+.+.|+.+++ +.++++++|.+++++ +
T Consensus 276 ~l~~~d~~v~~~----G-~~t~~Ea~~~G~P~v~~p~~~dq~~~a-~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~-~ 348 (384)
T 2p6p_A 276 VAPTCDLLVHHA----G-GVSTLTGLSAGVPQLLIPKGSVLEAPA-RRVADYGAAIALLPGEDSTEAIADSCQELQAK-D 348 (384)
T ss_dssp HGGGCSEEEECS----C-TTHHHHHHHTTCCEEECCCSHHHHHHH-HHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC-H
T ss_pred HHhhCCEEEeCC----c-HHHHHHHHHhCCCEEEccCcccchHHH-HHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC-H
Confidence 789999999843 3 468999999999999998754 33 45666778998874 689999999999998 8
Q ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 437 EVLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 437 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
+.++++++.+.+..... ..+.+++.++++..
T Consensus 349 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 349 TYARRAQDLSREISGMP-LPATVVTALEQLAH 379 (384)
T ss_dssp HHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence 88889988887777554 78888887777654
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.72 E-value=5.3e-16 Score=153.44 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=118.8
Q ss_pred CCCcEEEEEEeeecc-----ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHH
Q 011355 290 ENRSLVLGMAGRLVK-----DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMF 364 (488)
Q Consensus 290 ~~~~~~i~~~Grl~~-----~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~ 364 (488)
++++.++++.|+... .+.+..+++++..+ ++++++++.++..+.++++.++|.+.|++++. ++
T Consensus 265 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---------~~~~v~~~g~~~~~~l~~~~~~v~~~~~~~~~---~l 332 (441)
T 2yjn_A 265 PERRRVCLTLGISSRENSIGQVSIEELLGAVGDV---------DAEIIATFDAQQLEGVANIPDNVRTVGFVPMH---AL 332 (441)
T ss_dssp CSSCEEEEEC----------CCSTTTTHHHHHTS---------SSEEEECCCTTTTSSCSSCCSSEEECCSCCHH---HH
T ss_pred CCCCEEEEECCCCcccccChHHHHHHHHHHHHcC---------CCEEEEEECCcchhhhccCCCCEEEecCCCHH---HH
Confidence 444578889999875 37788888887543 46777766655444444566899999999853 56
Q ss_pred HHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC---CHHHHHHHHHHHHhcCHH
Q 011355 365 YNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP---QVESVKKALYGIWADGRE 437 (488)
Q Consensus 365 ~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~ 437 (488)
|..||++|.. .| +.++.|||++|+|+|+....+ .. +.+.+.+.|+.++. +.++++++|.+++++ ++
T Consensus 333 l~~ad~~V~~----~G-~~t~~Ea~~~G~P~i~~p~~~dQ~~na-~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~-~~ 405 (441)
T 2yjn_A 333 LPTCAATVHH----GG-PGSWHTAAIHGVPQVILPDGWDTGVRA-QRTQEFGAGIALPVPELTPDQLRESVKRVLDD-PA 405 (441)
T ss_dssp GGGCSEEEEC----CC-HHHHHHHHHTTCCEEECCCSHHHHHHH-HHHHHHTSEEECCTTTCCHHHHHHHHHHHHHC-HH
T ss_pred HhhCCEEEEC----CC-HHHHHHHHHhCCCEEEeCCcccHHHHH-HHHHHcCCEEEcccccCCHHHHHHHHHHHhcC-HH
Confidence 8999999972 23 579999999999999998743 22 45667788998875 789999999999998 88
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 438 VLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 438 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
.++++++.+.+.... ...+.+++.+++++.
T Consensus 406 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 406 HRAGAARMRDDMLAE-PSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHHHHHHHTS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 888888888777654 688888888877754
No 43
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.70 E-value=8.1e-15 Score=144.19 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=114.3
Q ss_pred CCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEE-EEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcC
Q 011355 291 NRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVF-LVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAID 369 (488)
Q Consensus 291 ~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l-~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ad 369 (488)
+++.++++.|+.. .+..+.+.+++..+.+ .++++ +++|.+...+.++.+.++|.+.+++++. ++|..||
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~------~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~d 323 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG------LDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQL---DILTKAS 323 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT------CSSEEEEECCTTSCGGGGCSCCTTEEEESSCCHH---HHHTTCS
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc------CCcEEEEEECCcCChHHhccCCCCeEEecCCCHH---HHHhhCC
Confidence 3447888899886 3333444444444432 34566 5578766555555567899999999844 7899999
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHH
Q 011355 370 IFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKK 442 (488)
Q Consensus 370 v~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~ 442 (488)
++|..+ | .++++||+++|+|+|+....+ .. +.+.+.+.|+.++. +.++++++|.+++++ ++.++++
T Consensus 324 ~~v~~~----G-~~t~~Ea~~~G~P~i~~p~~~dQ~~na-~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~ 396 (424)
T 2iya_A 324 AFITHA----G-MGSTMEALSNAVPMVAVPQIAEQTMNA-ERIVELGLGRHIPRDQVTAEKLREAVLAVASD-PGVAERL 396 (424)
T ss_dssp EEEECC----C-HHHHHHHHHTTCCEEECCCSHHHHHHH-HHHHHTTSEEECCGGGCCHHHHHHHHHHHHHC-HHHHHHH
T ss_pred EEEECC----c-hhHHHHHHHcCCCEEEecCccchHHHH-HHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcC-HHHHHHH
Confidence 998622 3 479999999999999998753 22 34566788888874 789999999999998 8877777
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 443 GLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 443 ~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
++.+.+... ....+.+++.+++++.
T Consensus 397 ~~~~~~~~~-~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 397 AAVRQEIRE-AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHh
Confidence 777666543 3467777777776654
No 44
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.66 E-value=1.7e-14 Score=142.80 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=167.5
Q ss_pred CCcEEEeCCc---chHHhh--hccCCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhhcCCccEE
Q 011355 164 PFDVIHTESV---GLRHTR--ARNLTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHH 238 (488)
Q Consensus 164 ~~Dvv~~~~~---~~~~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 238 (488)
++||++--+. ...... .+..| +-+++-|.+.-+ .+...|.+
T Consensus 349 ~IDILVdL~g~t~~~~i~~aa~RpAP-VQvs~lGyp~TT---------------------------------Gl~~iDY~ 394 (631)
T 3q3e_A 349 GAAIFYMPSIGMDMTTIFASNTRLAP-IQAIALGHPATT---------------------------------HSDFIEYV 394 (631)
T ss_dssp TCSEEEESCCSSSHHHHHHTTSCCSS-EEEEECSSCSCC---------------------------------CCTTCCEE
T ss_pred CCCEEEECCCCCCchhHHHHhCCCch-heEeccCCCccc---------------------------------CcccCCEE
Confidence 8999987432 222222 34557 888887753321 12345666
Q ss_pred EEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCC-CcEEEEEEeeeccccChHHHHHHHHH
Q 011355 239 VATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPEN-RSLVLGMAGRLVKDKGHPLMFEALKQ 317 (488)
Q Consensus 239 i~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~-~~~~i~~~Grl~~~Kg~~~ll~a~~~ 317 (488)
++-..... -...| .+++..+|+..-. +.+... ...|..++++.+ ..++++++++ ..|..+.+++++.+
T Consensus 395 i~D~~~~~--~~~~y---sEklirLP~~~~~--~~p~~~--~p~r~~~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~War 463 (631)
T 3q3e_A 395 IVEDDYVG--SEECF---SETLLRLPKDALP--YVPSAL--APEKVDYLLRENPEVVNIGIAST--TMKLNPYFLEALKA 463 (631)
T ss_dssp EEEGGGCC--CGGGC---SSEEEEECTTSSC--CCCCTT--CCSSCCCCCCSCCSEEEEEEEEC--STTCCHHHHHHHHH
T ss_pred EeCCCCCC--cccCc---eeeEEECCCCccc--cCCccc--CCccccccCCcCCCeEEEEECCc--cccCCHHHHHHHHH
Confidence 66332111 12223 5788888874211 111111 112456677764 3377777776 47999999999999
Q ss_pred hHhhccCCCCCeEEE--EEeCC--CchhHHh-----hhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHH
Q 011355 318 LLAENDTFRRSTVFL--VAGDG--PWGARYR-----DLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEA 388 (488)
Q Consensus 318 l~~~~~~~~~~~~l~--ivG~g--~~~~~~~-----~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEA 388 (488)
+.++. |+..+. ++|++ ......+ .+.++|.|.|.++.++....|+.+|+++.|+. .+.|++.+||
T Consensus 464 IL~~v----P~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp--y~GgtTtlEA 537 (631)
T 3q3e_A 464 IRDRA----KVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFP--FGNTNGIIDM 537 (631)
T ss_dssp HHHHC----SSEEEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSS--SCCSHHHHHH
T ss_pred HHHhC----CCcEEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCc--ccCChHHHHH
Confidence 99998 776654 36743 3222222 24579999999999999999999999999985 4559999999
Q ss_pred HHcCCcEEEeCCCCcccceee------cCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh--hCC--HHH
Q 011355 389 MLSGKPLMATRLASIVGSVIV------GTDMGYLFSPQVESVKKALYGIWADGREVLEKKGLVARKRGLN--LFT--ATK 458 (488)
Q Consensus 389 ma~G~PVI~~~~~~~~~e~v~------~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~--~fs--~~~ 458 (488)
|++|+|||+...++.. +.+. -|-.++++..|.+++++...++.+| ++.+++++++.++.... .|+ .+.
T Consensus 538 LwmGVPVVTl~G~~~a-sRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D-~~~l~~LR~~Lr~~~~~spLFd~~~~~ 615 (631)
T 3q3e_A 538 VTLGLVGVCKTGAEVH-EHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAEN-HQERLELRRYIIENNGLNTLFTGDPRP 615 (631)
T ss_dssp HHTTCCEEEECCSSHH-HHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHC-HHHHHHHHHHHHHSCCHHHHTCSCCTH
T ss_pred HHcCCCEEeccCCcHH-HHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhhhCCCcchhHHH
Confidence 9999999998766554 2221 2444443333899999999999999 99999999999887644 344 244
Q ss_pred HHHHHHHHHHHh
Q 011355 459 MAAAYERLFLCI 470 (488)
Q Consensus 459 ~~~~~~~~~~~~ 470 (488)
+.+.|++++++.
T Consensus 616 ~e~~ye~~~~~w 627 (631)
T 3q3e_A 616 MGQVFLEKLNAF 627 (631)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 45
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.58 E-value=2.5e-14 Score=139.58 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=106.9
Q ss_pred CCCCcEEEEEEeeeccccC-hHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHh
Q 011355 289 PENRSLVLGMAGRLVKDKG-HPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNA 367 (488)
Q Consensus 289 ~~~~~~~i~~~Grl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ 367 (488)
.++++.++++.|+....++ .+.+.+++..+.+ .+..+++.+.+...+....+.++|.+.+++|+. ++|..
T Consensus 234 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~------~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p~~---~lL~~ 304 (400)
T 4amg_A 234 AAGRRRIAVTLGSIDALSGGIAKLAPLFSEVAD------VDAEFVLTLGGGDLALLGELPANVRVVEWIPLG---ALLET 304 (400)
T ss_dssp CTTCCEEEECCCSCC--CCSSSTTHHHHHHGGG------SSSEEEEECCTTCCCCCCCCCTTEEEECCCCHH---HHHTT
T ss_pred cCCCcEEEEeCCcccccCccHHHHHHHHHHhhc------cCceEEEEecCccccccccCCCCEEEEeecCHH---HHhhh
Confidence 3455577888898765543 3444455555543 355666666555455555677899999999865 56789
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcc---cceeecCCceeEeCCCHHHHHHHHHHHHhcCHHHHHHHHH
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIV---GSVIVGTDMGYLFSPQVESVKKALYGIWADGREVLEKKGL 444 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~---~e~v~~~~~g~l~~~d~~~la~~i~~ll~~~~~~~~~~~~ 444 (488)
+|++|. + .| .+++.|||++|+|+|+....+-. .+.+.+.+.|..++ +.+..+++|.++++| ++.+++.++
T Consensus 305 ~~~~v~---h-~G-~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~-~~~~~~~al~~lL~d-~~~r~~a~~ 377 (400)
T 4amg_A 305 CDAIIH---H-GG-SGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAE-AGSLGAEQCRRLLDD-AGLREAALR 377 (400)
T ss_dssp CSEEEE---C-CC-HHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECC-TTTCSHHHHHHHHHC-HHHHHHHHH
T ss_pred hhheec---c-CC-ccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcC-CCCchHHHHHHHHcC-HHHHHHHHH
Confidence 999985 2 23 56899999999999997665411 03455667788877 445567899999998 877766655
Q ss_pred HHHHHHhhhCCHHHHHHHHHHH
Q 011355 445 VARKRGLNLFTATKMAAAYERL 466 (488)
Q Consensus 445 ~a~~~~~~~fs~~~~~~~~~~~ 466 (488)
-+.+.. ..-+....++.++++
T Consensus 378 l~~~~~-~~~~~~~~a~~le~l 398 (400)
T 4amg_A 378 VRQEMS-EMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHHHH-TSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHh
Confidence 555444 334777777777654
No 46
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.55 E-value=5.2e-13 Score=130.78 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=103.4
Q ss_pred CcEEEEEEeee-ccccChHHHHHHHHHhHhhccCCCCCeEEEE-EeCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhcC
Q 011355 292 RSLVLGMAGRL-VKDKGHPLMFEALKQLLAENDTFRRSTVFLV-AGDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAID 369 (488)
Q Consensus 292 ~~~~i~~~Grl-~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~i-vG~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ad 369 (488)
++.++++.|+. ...+..+.++++++.+ + .++++ +|.+... ...+.++|.+.|++++.+ +|.+||
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~--------~-~~~v~~~g~~~~~--~~~~~~~v~~~~~~~~~~---~l~~~d 303 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH--------G-RRVILSRGWADLV--LPDDGADCFAIGEVNHQV---LFGRVA 303 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT--------T-CCEEECTTCTTCC--CSSCGGGEEECSSCCHHH---HGGGSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC--------C-CeEEEEeCCCccc--ccCCCCCEEEeCcCChHH---HHhhCC
Confidence 34678899998 4777777888888665 2 34444 4765432 233557899999999654 579999
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHH
Q 011355 370 IFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKK 442 (488)
Q Consensus 370 v~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~ 442 (488)
++|.. .| .++++|||++|+|+|+....+ .. +.+.+.+.|..++. +.++++++|.++ ++ ++.++++
T Consensus 304 ~~v~~----~G-~~t~~Ea~~~G~P~i~~p~~~dQ~~na-~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~-~~~~~~~ 375 (415)
T 1iir_A 304 AVIHH----GG-AGTTHVAARAGAPQILLPQMADQPYYA-GRVAELGVGVAHDGPIPTFDSLSAALATA-LT-PETHARA 375 (415)
T ss_dssp EEEEC----CC-HHHHHHHHHHTCCEEECCCSTTHHHHH-HHHHHHTSEEECSSSSCCHHHHHHHHHHH-TS-HHHHHHH
T ss_pred EEEeC----CC-hhHHHHHHHcCCCEEECCCCCccHHHH-HHHHHCCCcccCCcCCCCHHHHHHHHHHH-cC-HHHHHHH
Confidence 99973 23 369999999999999987754 22 34566678888864 789999999999 87 7777766
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHH
Q 011355 443 GLVARKRGLNLFTATKMAAAYERL 466 (488)
Q Consensus 443 ~~~a~~~~~~~fs~~~~~~~~~~~ 466 (488)
++.+.+... .-..+.+++.++++
T Consensus 376 ~~~~~~~~~-~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 376 TAVAGTIRT-DGAAVAARLLLDAV 398 (415)
T ss_dssp HHHHHHSCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-cChHHHHHHHHHHH
Confidence 665554432 22344444444333
No 47
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.54 E-value=4.6e-13 Score=130.59 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=108.3
Q ss_pred hhhhhhhCCCCCCcEEEEEEeeec-cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCH
Q 011355 280 KDFKKKFGIPENRSLVLGMAGRLV-KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQ 358 (488)
Q Consensus 280 ~~~r~~~~i~~~~~~~i~~~Grl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~ 358 (488)
.++++.++ ++++.++++.|+.. +.+.+..+++++..+ ++++++.++.+..+. .+..++|.+.++++.
T Consensus 211 ~~l~~~l~--~~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~---------~~~vv~~~g~~~~~~-~~~~~~v~~~~~~~~ 278 (404)
T 3h4t_A 211 AELEGFLR--AGSPPVYVGFGSGPAPAEAARVAIEAVRAQ---------GRRVVLSSGWAGLGR-IDEGDDCLVVGEVNH 278 (404)
T ss_dssp HHHHHHHH--TSSCCEEECCTTSCCCTTHHHHHHHHHHHT---------TCCEEEECTTTTCCC-SSCCTTEEEESSCCH
T ss_pred HHHHHHHh--cCCCeEEEECCCCCCcHHHHHHHHHHHHhC---------CCEEEEEeCCccccc-ccCCCCEEEecCCCH
Confidence 34444443 34447788889887 556566677776654 345565543322221 234689999999985
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceeecCCceeEeCC---CHHHHHHHHHHHH
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIVGTDMGYLFSP---QVESVKKALYGIW 432 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~---d~~~la~~i~~ll 432 (488)
. +++..||++|..+ | ..++.||+++|+|+|+....+-.. +.+.+.+.|..++. +.+++++++.+++
T Consensus 279 ~---~ll~~~d~~v~~g----G-~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll 350 (404)
T 3h4t_A 279 Q---VLFGRVAAVVHHG----G-AGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATAL 350 (404)
T ss_dssp H---HHGGGSSEEEECC----C-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHT
T ss_pred H---HHHhhCcEEEECC----c-HHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHh
Confidence 4 5678999999733 2 368999999999999987654210 23556677888764 7899999999998
Q ss_pred hcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 433 ADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 433 ~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
+ ++.++++.+.+..... -..+.+++.+++++.
T Consensus 351 ~--~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 351 T--PGIRARAAAVAGTIRT--DGTTVAAKLLLEAIS 382 (404)
T ss_dssp S--HHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh
Confidence 6 5666666555544432 355666666655543
No 48
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.43 E-value=4.2e-12 Score=124.39 Aligned_cols=137 Identities=13% Similarity=0.094 Sum_probs=96.3
Q ss_pred cEEEEEEeeec---cccChHHHHHHHHHhHhhccCCCCCeEEEEE-eCCCchhHHhhhCCcEEEeCccCHHHHHHHHHhc
Q 011355 293 SLVLGMAGRLV---KDKGHPLMFEALKQLLAENDTFRRSTVFLVA-GDGPWGARYRDLGTNVIVLGPLDQTRLAMFYNAI 368 (488)
Q Consensus 293 ~~~i~~~Grl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-G~g~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a 368 (488)
+.++++.|+.. ..+..+.+++++..+ +.+++++ |.+... ...+.++|.+.++++.. ++|..|
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---------~~~~v~~~g~~~~~--~~~~~~~v~~~~~~~~~---~ll~~~ 303 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---------GRRVILSRGWTELV--LPDDRDDCFAIDEVNFQ---ALFRRV 303 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---------TCCEEEECTTTTCC--CSCCCTTEEEESSCCHH---HHGGGS
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---------CCeEEEEeCCcccc--ccCCCCCEEEeccCChH---HHhccC
Confidence 46777889874 456666677776654 2445544 765432 23456799999999854 467999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcc---cceeecCCceeEeCC---CHHHHHHHHHHHHhcCHHHHHHH
Q 011355 369 DIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIV---GSVIVGTDMGYLFSP---QVESVKKALYGIWADGREVLEKK 442 (488)
Q Consensus 369 dv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~---~e~v~~~~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~ 442 (488)
|++|. + .| ..++.||+++|+|+|+....+-. .+.+.+.+.|..++. +.++++++|.++ +| ++.++++
T Consensus 304 d~~v~---~-~G-~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~-~~~~~~~ 376 (416)
T 1rrv_A 304 AAVIH---H-GS-AGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LA-PETRARA 376 (416)
T ss_dssp SEEEE---C-CC-HHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TS-HHHHHHH
T ss_pred CEEEe---c-CC-hhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hC-HHHHHHH
Confidence 99997 2 23 46999999999999998764411 034566678888863 789999999999 87 7777666
Q ss_pred HHHHHHHH
Q 011355 443 GLVARKRG 450 (488)
Q Consensus 443 ~~~a~~~~ 450 (488)
++.+++..
T Consensus 377 ~~~~~~~~ 384 (416)
T 1rrv_A 377 EAVAGMVL 384 (416)
T ss_dssp HHHTTTCC
T ss_pred HHHHHHHh
Confidence 65554433
No 49
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=6e-11 Score=123.20 Aligned_cols=183 Identities=15% Similarity=0.210 Sum_probs=140.9
Q ss_pred hhhhhhCCCCCCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCch-hHHhh----h---CCcEEE
Q 011355 281 DFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWG-ARYRD----L---GTNVIV 352 (488)
Q Consensus 281 ~~r~~~~i~~~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~-~~~~~----l---~~~V~~ 352 (488)
..|+.+|+|++. ++++++.++ .|=.+..++++.++.++. |+-+|++...+... +.+++ . .++|+|
T Consensus 512 ~~R~~~gLp~~~-v~f~~fN~~--~Ki~p~~~~~W~~IL~~v----P~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f 584 (723)
T 4gyw_A 512 TTRSQYGLPEDA-IVYCNFNQL--YKIDPSTLQMWANILKRV----PNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIF 584 (723)
T ss_dssp EEGGGGTCCTTS-EEEECCSCG--GGCCHHHHHHHHHHHHHC----SSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEE
T ss_pred cchhhcCCCCCC-EEEEeCCcc--ccCCHHHHHHHHHHHHhC----CCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEE
Confidence 467889999888 777766655 666788999999999999 99999988765432 22222 2 278999
Q ss_pred eCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc----ceeec-CCceeEeCCCHHHHHHH
Q 011355 353 LGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG----SVIVG-TDMGYLFSPQVESVKKA 427 (488)
Q Consensus 353 ~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~----e~v~~-~~~g~l~~~d~~~la~~ 427 (488)
.+.++.++....|..+|+++-|..+ +-+.+.+||+.+|+|||+-.-..... .++.. |-.-+++. |.++..+.
T Consensus 585 ~~~~~~~~~l~~~~~~Di~LDt~p~--~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~-~~~~Y~~~ 661 (723)
T 4gyw_A 585 SPVAPKEEHVRRGQLADVCLDTPLC--NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK-NRQEYEDI 661 (723)
T ss_dssp EECCCHHHHHHHGGGCSEEECCSSS--CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS-SHHHHHHH
T ss_pred CCCCCHHHHHHHhCCCeEEeCCCCc--CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC-CHHHHHHH
Confidence 9999999999999999999998754 45899999999999999865433332 11111 12223333 89999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHhhccc
Q 011355 428 LYGIWADGREVLEKKGLVARKRGLN--LFTATKMAAAYERLFLCISNDE 474 (488)
Q Consensus 428 i~~ll~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~~~~ 474 (488)
..++.+| ++.+..++++-++.... -|+.+..++.+++.|+++-...
T Consensus 662 a~~la~d-~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~ 709 (723)
T 4gyw_A 662 AVKLGTD-LEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHY 709 (723)
T ss_dssp HHHHHHC-HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-HHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999998888777654 5899999999999998876543
No 50
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=109.37 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=99.6
Q ss_pred hhhhhhCCCCCCcEEEEEEeeec---cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccC
Q 011355 281 DFKKKFGIPENRSLVLGMAGRLV---KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLD 357 (488)
Q Consensus 281 ~~r~~~~i~~~~~~~i~~~Grl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~ 357 (488)
++.+.+.-.++++.+++++|+.. +.|++..+++++..+ +.+++++++++..+ .+.++|.+.|+++
T Consensus 10 ~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---------~~~~~~~~g~~~~~---~~~~~v~~~~~~~ 77 (170)
T 2o6l_A 10 EMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQI---------PQKVLWRFDGNKPD---TLGLNTRLYKWIP 77 (170)
T ss_dssp HHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTS---------SSEEEEECCSSCCT---TCCTTEEEESSCC
T ss_pred HHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhC---------CCeEEEEECCcCcc---cCCCcEEEecCCC
Confidence 33333332334447888999985 566777777776433 35677766554322 3567999999999
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCC----cccceeecCCceeEeCC---CHHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLAS----IVGSVIVGTDMGYLFSP---QVESVKKALYG 430 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~----~~~e~v~~~~~g~l~~~---d~~~la~~i~~ 430 (488)
++++..+ ..||++|.. .| +.+++|||++|+|+|+....+ .. +.+.+.+.|+.+++ +.++++++|.+
T Consensus 78 ~~~~l~~-~~ad~~I~~----~G-~~t~~Ea~~~G~P~i~~p~~~~Q~~na-~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 150 (170)
T 2o6l_A 78 QNDLLGH-PKTRAFITH----GG-ANGIYEAIYHGIPMVGIPLFADQPDNI-AHMKARGAAVRVDFNTMSSTDLLNALKR 150 (170)
T ss_dssp HHHHHTS-TTEEEEEEC----CC-HHHHHHHHHHTCCEEECCCSTTHHHHH-HHHHTTTSEEECCTTTCCHHHHHHHHHH
T ss_pred HHHHhcC-CCcCEEEEc----CC-ccHHHHHHHcCCCEEeccchhhHHHHH-HHHHHcCCeEEeccccCCHHHHHHHHHH
Confidence 7655433 999999973 23 589999999999999998753 22 45677889999875 78999999999
Q ss_pred HHhcCHHHH
Q 011355 431 IWADGREVL 439 (488)
Q Consensus 431 ll~~~~~~~ 439 (488)
++++ ++.+
T Consensus 151 ll~~-~~~~ 158 (170)
T 2o6l_A 151 VIND-PSYK 158 (170)
T ss_dssp HHHC-HHHH
T ss_pred HHcC-HHHH
Confidence 9998 6543
No 51
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.96 E-value=9.9e-09 Score=104.00 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=159.0
Q ss_pred cCCccEEEEcChhhHHHHHH-----HhcCCCCcEEEecCCccCCCc----CCC---------------------------
Q 011355 232 FPKYAHHVATSDHCGDVLKR-----IYMIPEERVHVILNGVDEEVF----KPD--------------------------- 275 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~-----~~g~~~~~i~vi~ngvd~~~~----~~~--------------------------- 275 (488)
+..++.|-++|+...+.++. .+..-+.++.-|-|||+.... .|.
T Consensus 400 i~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~ 479 (796)
T 2c4m_A 400 CYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSY 479 (796)
T ss_dssp HHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGG
T ss_pred HHhcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhh
Confidence 46789999999998888874 233446789999999988766 111
Q ss_pred ccc--------------chh----hhhhhCCCCC-CcEEEEEEeeeccccChHH-HHHHHHHhHh--hccC-CCCCeEEE
Q 011355 276 VAM--------------GKD----FKKKFGIPEN-RSLVLGMAGRLVKDKGHPL-MFEALKQLLA--ENDT-FRRSTVFL 332 (488)
Q Consensus 276 ~~~--------------~~~----~r~~~~i~~~-~~~~i~~~Grl~~~Kg~~~-ll~a~~~l~~--~~~~-~~~~~~l~ 332 (488)
..+ +.. ++++.|++-+ +.+.++++.|+..+|++++ ++..+..+.+ ..++ -..++.++
T Consensus 480 ~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~I 559 (796)
T 2c4m_A 480 ADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVI 559 (796)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEE
Confidence 000 112 3556666432 2388999999999999999 8888877764 2200 00258999
Q ss_pred EEeCCCch-hH-------Hhh----------hCC--cEEEeCccCHHHHHHHHHhcCEEEeCCCC-CCCCChHHHHHHHc
Q 011355 333 VAGDGPWG-AR-------YRD----------LGT--NVIVLGPLDQTRLAMFYNAIDIFVNPTLR-AQGLDHTVLEAMLS 391 (488)
Q Consensus 333 ivG~g~~~-~~-------~~~----------l~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~~-~eg~~~~~lEAma~ 391 (488)
+.|++... +. +.+ ..+ +|.|+...+.+--..++.+||++++||+. .|..|+.-+=+|..
T Consensus 560 f~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~N 639 (796)
T 2c4m_A 560 FGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMN 639 (796)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHT
T ss_pred EEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHc
Confidence 99986422 11 111 235 79998877777788899999999999982 49999999999999
Q ss_pred CCcEEEeCCCCcccceeec--CCceeEeCC---CHHHHHHH---HHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 011355 392 GKPLMATRLASIVGSVIVG--TDMGYLFSP---QVESVKKA---LYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463 (488)
Q Consensus 392 G~PVI~~~~~~~~~e~v~~--~~~g~l~~~---d~~~la~~---i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 463 (488)
|.+.|++--|... |+.++ .++|++|.. +++++... ..-.-.+ + .++++-.+ .....|||..- ..|
T Consensus 640 GaL~iGtLDGanv-Ei~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~-~-~~~~vvd~---~~~g~fs~~~~-~~y 712 (796)
T 2c4m_A 640 GALTLGTMDGANV-EIVDSVGEENAYIFGARVEELPALRESYKPYELYETV-P-GLKRALDA---LDNGTLNDNNS-GLF 712 (796)
T ss_dssp TCEEEEESSTHHH-HHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHS-T-THHHHHHT---TTSSSSCCTTC-CHH
T ss_pred CCeEEeccCCeEe-ehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcC-H-HHHHHHHH---HHcCCCCCCCH-HHH
Confidence 9999988777766 55433 479999986 34444432 1111122 2 22222222 23456888776 779
Q ss_pred HHHHHHhhc
Q 011355 464 ERLFLCISN 472 (488)
Q Consensus 464 ~~~~~~~~~ 472 (488)
.++|+.+++
T Consensus 713 ~~Ly~~L~~ 721 (796)
T 2c4m_A 713 YDLKHSLIH 721 (796)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999999864
No 52
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.90 E-value=1.4e-08 Score=102.91 Aligned_cols=235 Identities=17% Similarity=0.176 Sum_probs=161.3
Q ss_pred cCCccEEEEcChhhHHHHHH-----HhcCCCCcEEEecCCccCCCc----CCC--------------------------c
Q 011355 232 FPKYAHHVATSDHCGDVLKR-----IYMIPEERVHVILNGVDEEVF----KPD--------------------------V 276 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~-----~~g~~~~~i~vi~ngvd~~~~----~~~--------------------------~ 276 (488)
+..++.|-++|+...+.++. .+..-+.++.-|-|||+.... .|. .
T Consensus 411 i~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~ 490 (796)
T 1l5w_A 411 VVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFA 490 (796)
T ss_dssp HHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGG
T ss_pred HHhcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcC
Confidence 46789999999998888864 233346789999999976433 110 0
Q ss_pred c----------c----chh----hhhhhCCCCC-CcEEEEEEeeeccccChHH-HHHHHHHhHh--hccC-CCCCeEEEE
Q 011355 277 A----------M----GKD----FKKKFGIPEN-RSLVLGMAGRLVKDKGHPL-MFEALKQLLA--ENDT-FRRSTVFLV 333 (488)
Q Consensus 277 ~----------~----~~~----~r~~~~i~~~-~~~~i~~~Grl~~~Kg~~~-ll~a~~~l~~--~~~~-~~~~~~l~i 333 (488)
. . +.. +++++|++-+ +.+.++++.|+..+|++++ ++..+..+.+ ..++ -..++.+++
T Consensus 491 ~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If 570 (796)
T 1l5w_A 491 DDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLF 570 (796)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEE
Confidence 0 0 112 3566776533 2388999999999999999 8888877754 1200 002589999
Q ss_pred EeCCCch-hH-------Hhh----------hCC--cEEEeCccCHHHHHHHHHhcCEEEeCCCC-CCCCChHHHHHHHcC
Q 011355 334 AGDGPWG-AR-------YRD----------LGT--NVIVLGPLDQTRLAMFYNAIDIFVNPTLR-AQGLDHTVLEAMLSG 392 (488)
Q Consensus 334 vG~g~~~-~~-------~~~----------l~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~~-~eg~~~~~lEAma~G 392 (488)
.|++... +. +.+ ..+ +|.|+...+.+--..++.+||++++||+. .|..|+.-+=+|..|
T Consensus 571 ~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NG 650 (796)
T 1l5w_A 571 GAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNG 650 (796)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTT
T ss_pred EecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcC
Confidence 9986422 11 111 224 79998877777778899999999999982 499999999999999
Q ss_pred CcEEEeCCCCcccceeec--CCceeEeCCCHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHH
Q 011355 393 KPLMATRLASIVGSVIVG--TDMGYLFSPQVESVKKALY------GIWADGREVLEKKGLVARKRGLNLFTATKMAAAYE 464 (488)
Q Consensus 393 ~PVI~~~~~~~~~e~v~~--~~~g~l~~~d~~~la~~i~------~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 464 (488)
.+.|++--|... |+.++ .++|++|..+++++.+.-. .+..+++ .++++-.++. ...|||..- ..|.
T Consensus 651 aL~iGtLDGanv-Ei~e~vG~~NgF~FG~~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~---~g~fs~~~~-~~y~ 724 (796)
T 1l5w_A 651 ALTVGTLDGANV-EIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELE---SGKYSDGDK-HAFD 724 (796)
T ss_dssp CEEEECSCTTHH-HHHHHHCGGGSEECSCCHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHH---HTTTTTTCT-TTTH
T ss_pred CeeecCcCCeee-ehhhccCCCcEEEecCCHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHH---cCCCCCCcH-HHHH
Confidence 999988777776 55433 4799999877777663222 2222214 3444444433 456999875 7799
Q ss_pred HHHHHhhc
Q 011355 465 RLFLCISN 472 (488)
Q Consensus 465 ~~~~~~~~ 472 (488)
++|+.+++
T Consensus 725 ~Ly~~L~~ 732 (796)
T 1l5w_A 725 QMLHSIGK 732 (796)
T ss_dssp HHHHHTST
T ss_pred HHHHHHhc
Confidence 99998865
No 53
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.90 E-value=3.3e-08 Score=100.65 Aligned_cols=234 Identities=15% Similarity=0.180 Sum_probs=159.8
Q ss_pred hcCCccEEEEcChhhHHHHHH-----HhcCCCCcEEEecCCccCCCc----CCC--------------------------
Q 011355 231 FFPKYAHHVATSDHCGDVLKR-----IYMIPEERVHVILNGVDEEVF----KPD-------------------------- 275 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~-----~~g~~~~~i~vi~ngvd~~~~----~~~-------------------------- 275 (488)
.+..++.|-++|+...+.++. .+...+.++.-|-|||+.... .|.
T Consensus 434 ai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y 513 (824)
T 2gj4_A 434 CIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSY 513 (824)
T ss_dssp HHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGG
T ss_pred HHHhcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhc
Confidence 346888999999988887753 123346799999999987765 110
Q ss_pred ---cc-----------cchh----hhhhhCCCCC-CcEEEEEEeeeccccChHHH-HHHHHHhHh--hccCCCC--CeEE
Q 011355 276 ---VA-----------MGKD----FKKKFGIPEN-RSLVLGMAGRLVKDKGHPLM-FEALKQLLA--ENDTFRR--STVF 331 (488)
Q Consensus 276 ---~~-----------~~~~----~r~~~~i~~~-~~~~i~~~Grl~~~Kg~~~l-l~a~~~l~~--~~~~~~~--~~~l 331 (488)
.. .+.. +.++.|++-+ +.+.++++.|+..+|+++++ +..+..+.+ ..++ +| ++.+
T Consensus 514 ~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~-~~~~p~q~ 592 (824)
T 2gj4_A 514 VDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPN-KFVVPRTV 592 (824)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTT-SCCCCEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCC-CCCCCEEE
Confidence 00 0011 3445676432 23889999999999999997 787777742 2310 01 6799
Q ss_pred EEEeCCCch-hHH-------hhh----------CC--cEEEeCccCHHHHHHHHHhcCEEEeCCCC-CCCCChHHHHHHH
Q 011355 332 LVAGDGPWG-ARY-------RDL----------GT--NVIVLGPLDQTRLAMFYNAIDIFVNPTLR-AQGLDHTVLEAML 390 (488)
Q Consensus 332 ~ivG~g~~~-~~~-------~~l----------~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~~-~eg~~~~~lEAma 390 (488)
++.|++... +.. .++ .+ +|.|+...+.+--..++.+||++++||+. .|..|+.-+=||.
T Consensus 593 If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKaml 672 (824)
T 2gj4_A 593 MIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFML 672 (824)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHH
T ss_pred EEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHH
Confidence 999986422 111 111 34 79998877777778899999999999982 4999999999999
Q ss_pred cCCcEEEeCCCCcccceee--cCCceeEeCCCHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHH
Q 011355 391 SGKPLMATRLASIVGSVIV--GTDMGYLFSPQVESVKKAL-------YGIWADGREVLEKKGLVARKRGLNLFTATKMAA 461 (488)
Q Consensus 391 ~G~PVI~~~~~~~~~e~v~--~~~~g~l~~~d~~~la~~i-------~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 461 (488)
.|.+.|++--|... |+.+ ..++|++|...++++ ..+ ..+.+. .+.++++-++. +...|+|..- .
T Consensus 673 NGaLtigtlDGanv-Ei~e~vG~~Ngf~FG~~~~ev-~~l~~~~~~a~~~Y~~-~~~l~~v~d~i---~~g~fs~~~~-~ 745 (824)
T 2gj4_A 673 NGALTIGTMDGANV-EMAEEAGEENFFIFGMRVEDV-DRLDQRGYNAQEYYDR-IPELRQIIEQL---SSGFFSPKQP-D 745 (824)
T ss_dssp TTCEEEECSCTTHH-HHHHHHCGGGSEECSCCHHHH-HHHHHHCCCHHHHHHH-CHHHHHHHHHH---HHTTTCTTST-T
T ss_pred cCceEEEEecCccc-hhhhccCCCCEEEeCCcHHHH-HHHHHcCCCHHHHhcC-CHHHHHHHHHH---HhCCCCCCCh-H
Confidence 99999998777665 5443 457899998766666 333 233444 23344443443 3456998776 6
Q ss_pred HHHHHHHHhhc
Q 011355 462 AYERLFLCISN 472 (488)
Q Consensus 462 ~~~~~~~~~~~ 472 (488)
.|.++|+++++
T Consensus 746 ~y~~ly~~l~~ 756 (824)
T 2gj4_A 746 LFKDIVNMLMH 756 (824)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 78888888764
No 54
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.82 E-value=4.4e-06 Score=82.39 Aligned_cols=191 Identities=15% Similarity=0.061 Sum_probs=107.3
Q ss_pred hhcCCccEEEEcChhhHH-HHHHHhc--C-CCCcEEEecCCccCCCcCCCc---ccchhhhhhhCCCCCCcEEEEEEeee
Q 011355 230 KFFPKYAHHVATSDHCGD-VLKRIYM--I-PEERVHVILNGVDEEVFKPDV---AMGKDFKKKFGIPENRSLVLGMAGRL 302 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~-~~~~~~g--~-~~~~i~vi~ngvd~~~~~~~~---~~~~~~r~~~~i~~~~~~~i~~~Grl 302 (488)
..+++++.+++.|-...+ .....+. . +..++..|..-.....-.... ....++.+.++-.++++.+++..|+.
T Consensus 207 ~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~ 286 (463)
T 2acv_A 207 ERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSM 286 (463)
T ss_dssp HHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSS
T ss_pred HhcccCCEEEECCHHHHhHHHHHHHHhccccCCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccc
Confidence 345788888776643332 2222111 1 123566665322111000000 11234445555444555788888987
Q ss_pred ccccChHHHHHHHHHhHhhccCCCCCeEEE-EEeCC--CchhHH-hhh--CCcEEEeCccCHHHHHHHHH--hcCEEEeC
Q 011355 303 VKDKGHPLMFEALKQLLAENDTFRRSTVFL-VAGDG--PWGARY-RDL--GTNVIVLGPLDQTRLAMFYN--AIDIFVNP 374 (488)
Q Consensus 303 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~-ivG~g--~~~~~~-~~l--~~~V~~~g~v~~~~l~~~~~--~adv~v~p 374 (488)
...-+.+.+.+.+..+.+. +.+++ ++|.+ ...+.+ +.. .+++.+.+++++. .+|. ++|+||.
T Consensus 287 ~~~~~~~~~~~~~~~l~~~------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~v~~w~pq~---~vL~h~~~~~fvt- 356 (463)
T 2acv_A 287 GVSFGPSQIREIALGLKHS------GVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQV---EVLAHKAIGGFVS- 356 (463)
T ss_dssp CCCCCHHHHHHHHHHHHHH------TCEEEEECCCCGGGSCTTHHHHHHHHCSEEEESSCCHH---HHHHSTTEEEEEE-
T ss_pred cccCCHHHHHHHHHHHHhC------CCcEEEEECCCcccCChhHHHhhccCCCEEEEccCCHH---HHhCCCccCeEEe-
Confidence 6222333344444444332 34444 45543 111222 233 5789999999854 4676 6778886
Q ss_pred CCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ce-eecCCceeEe-C-------C-CHHHHHHHHHHHHhc
Q 011355 375 TLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SV-IVGTDMGYLF-S-------P-QVESVKKALYGIWAD 434 (488)
Q Consensus 375 s~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~-v~~~~~g~l~-~-------~-d~~~la~~i~~ll~~ 434 (488)
+ -| .++++||+++|+|+|+-...+-.. .. ++..+.|..+ . . +.++++++|.+++++
T Consensus 357 --h-~G-~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~ 425 (463)
T 2acv_A 357 --H-CG-WNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDK 425 (463)
T ss_dssp --C-CC-HHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCT
T ss_pred --c-CC-chhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHhc
Confidence 3 34 569999999999999987643210 23 4566788887 2 4 789999999999964
No 55
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.78 E-value=3.6e-06 Score=83.56 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=92.1
Q ss_pred CCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEE-EeCCC-------c-hhHHhhhCCcEEEeCccCHHHH
Q 011355 291 NRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLV-AGDGP-------W-GARYRDLGTNVIVLGPLDQTRL 361 (488)
Q Consensus 291 ~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~i-vG~g~-------~-~~~~~~l~~~V~~~g~v~~~~l 361 (488)
+++.+++..|+... ...+.+.+.+..+.+ .+.++++ +|... . ....+...+++.+.+++++.
T Consensus 294 ~~~vv~vs~GS~~~-~~~~~~~~~~~~l~~------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~pq~-- 364 (482)
T 2pq6_A 294 PGSVVYVNFGSTTV-MTPEQLLEFAWGLAN------CKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQD-- 364 (482)
T ss_dssp TTCEEEEECCSSSC-CCHHHHHHHHHHHHH------TTCEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHH--
T ss_pred CCceEEEecCCccc-CCHHHHHHHHHHHHh------cCCcEEEEEcCCccccccccCcHhHHHhcCCCEEEEeecCHH--
Confidence 44477788888653 233444444444433 2345544 44321 1 12223356899999999954
Q ss_pred HHHHHhcCE--EEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---ceee-cCCceeEeCC--CHHHHHHHHHHHHh
Q 011355 362 AMFYNAIDI--FVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVIV-GTDMGYLFSP--QVESVKKALYGIWA 433 (488)
Q Consensus 362 ~~~~~~adv--~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v~-~~~~g~l~~~--d~~~la~~i~~ll~ 433 (488)
++|+.+++ ||. + .| .+++.||+++|+|+|+-...+-.. ..+. +-+.|..++. +.+++.++|.+++.
T Consensus 365 -~~L~h~~~~~~vt---h-~G-~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~ 438 (482)
T 2pq6_A 365 -KVLNHPSIGGFLT---H-CG-WNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIA 438 (482)
T ss_dssp -HHHTSTTEEEEEE---C-CC-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHT
T ss_pred -HHhcCCCCCEEEe---c-CC-cchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHc
Confidence 47877666 554 2 34 569999999999999987654210 2243 5678887764 89999999999998
Q ss_pred cCHHHHHHHHHHHHHHHh
Q 011355 434 DGREVLEKKGLVARKRGL 451 (488)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~ 451 (488)
+ ++ .+++++++++...
T Consensus 439 ~-~~-~~~~r~~a~~l~~ 454 (482)
T 2pq6_A 439 G-DK-GKKMKQKAMELKK 454 (482)
T ss_dssp S-HH-HHHHHHHHHHHHH
T ss_pred C-Cc-HHHHHHHHHHHHH
Confidence 8 65 3566666665553
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=98.66 E-value=3.5e-06 Score=79.95 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=77.1
Q ss_pred cchhhhhhhCCCCCCcEEEEEEee-eccccChH--HHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhC-------
Q 011355 278 MGKDFKKKFGIPENRSLVLGMAGR-LVKDKGHP--LMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLG------- 347 (488)
Q Consensus 278 ~~~~~r~~~~i~~~~~~~i~~~Gr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~------- 347 (488)
....++++++++.+++++++..|. ..+.|... .+.+++..+.++ ++++++.|...+.+..+++.
T Consensus 166 ~~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~------~~~vvl~g~~~e~~~~~~i~~~~~~~~ 239 (348)
T 1psw_A 166 EKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE------GYQVVLFGSAKDHEAGNEILAALNTEQ 239 (348)
T ss_dssp HHHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT------TCEEEECCCGGGHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHHC------CCeEEEEeChhhHHHHHHHHHhhhhcc
Confidence 345567788876555577778887 55667664 778888777653 56788888665554444321
Q ss_pred -Cc-EEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEe
Q 011355 348 -TN-VIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMAT 398 (488)
Q Consensus 348 -~~-V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~ 398 (488)
.+ +.+.|..+-.|+..+++.||++|... + | .+-.|.++|+|+|+-
T Consensus 240 ~~~~~~l~g~~sl~e~~ali~~a~l~I~~D----s-g-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 240 QAWCRNLAGETQLDQAVILIAACKAIVTND----S-G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp HTTEEECTTTSCHHHHHHHHHTSSEEEEES----S-H-HHHHHHHTTCCEEEE
T ss_pred ccceEeccCcCCHHHHHHHHHhCCEEEecC----C-H-HHHHHHHcCCCEEEE
Confidence 23 46678888899999999999999854 1 2 344499999999985
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.63 E-value=3.8e-05 Score=74.93 Aligned_cols=205 Identities=15% Similarity=-0.004 Sum_probs=116.7
Q ss_pred hhcCCccEEEEcChhhHHH-HHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeeccccCh
Q 011355 230 KFFPKYAHHVATSDHCGDV-LKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGH 308 (488)
Q Consensus 230 ~~~~~~d~ii~~S~~~~~~-~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~Kg~ 308 (488)
..+.+++.+++.|-...+. ..+.+.-...++..|+.-..... ........+..+.++-.++++.+++..|+.... ..
T Consensus 211 ~~~~~~~~vl~ns~~eLE~~~~~~~~~~~~~v~~vGPl~~~~~-~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~-~~ 288 (454)
T 3hbf_A 211 LELPRANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTP-QRKVSDEHGCLEWLDQHENSSVVYISFGSVVTP-PP 288 (454)
T ss_dssp HHGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEECCCHHHHSC-CSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCC-CH
T ss_pred HhhccCCEEEECChhHhCHHHHHHHHhcCCCEEEECCcccccc-cccccchHHHHHHHhcCCCCceEEEecCCCCcC-CH
Confidence 4467899999998665432 11111111235555553221110 011111234455555444555788888887643 23
Q ss_pred HHHHHHHHHhHhhccCCCCCeEEE-EEeCCCch----hHHhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCCh
Q 011355 309 PLMFEALKQLLAENDTFRRSTVFL-VAGDGPWG----ARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDH 383 (488)
Q Consensus 309 ~~ll~a~~~l~~~~~~~~~~~~l~-ivG~g~~~----~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~ 383 (488)
+.+.+.+..+.+. +.+++ .+|.+... ...+...+++.+.+++|+ ..+++.+++.++-++ .| -+
T Consensus 289 ~~~~el~~~l~~~------~~~flw~~~~~~~~~lp~~~~~~~~~~~~vv~w~Pq---~~vL~h~~v~~fvtH--~G-~~ 356 (454)
T 3hbf_A 289 HELTALAESLEEC------GFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQ---VEILKHSSVGVFLTH--SG-WN 356 (454)
T ss_dssp HHHHHHHHHHHHH------CCCEEEECCSCHHHHSCTTHHHHTTTTEEEESSCCH---HHHHHSTTEEEEEEC--CC-HH
T ss_pred HHHHHHHHHHHhC------CCeEEEEeCCcchhcCCHhHHhhcCCceEEEeeCCH---HHHHhhcCcCeEEec--CC-cc
Confidence 4444444444432 23343 44543211 112334578999999995 378889995444342 34 46
Q ss_pred HHHHHHHcCCcEEEeCCCCcc---cceeecC-CceeEeCC---CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011355 384 TVLEAMLSGKPLMATRLASIV---GSVIVGT-DMGYLFSP---QVESVKKALYGIWADGREVLEKKGLVARKRG 450 (488)
Q Consensus 384 ~~lEAma~G~PVI~~~~~~~~---~e~v~~~-~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~ 450 (488)
+++||+++|+|+|+-...+-. ...+.+. +.|..++. +.++++++|.+++++ + ..++|++++++..
T Consensus 357 S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~-~-~~~~~r~~a~~l~ 428 (454)
T 3hbf_A 357 SVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSS-E-KGGIMRQKIVKLK 428 (454)
T ss_dssp HHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSS-H-HHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCC-C-hHHHHHHHHHHHH
Confidence 999999999999998764311 0234553 77887764 789999999999987 3 2345555554443
No 58
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.62 E-value=8.2e-06 Score=80.19 Aligned_cols=197 Identities=15% Similarity=0.028 Sum_probs=114.6
Q ss_pred cCCccEEEEcChhhHHH-----HHHHhcCCCCcEEEecCCccCCCcCCCcccchhhhhhhCCCCCCcEEEEEEeeecccc
Q 011355 232 FPKYAHHVATSDHCGDV-----LKRIYMIPEERVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDK 306 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~-----~~~~~g~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~K 306 (488)
.++++.+++.|....+. ++..+ .++..|+.-..... ........++.+.++..++++.+++..|+....
T Consensus 211 ~~~~~~vl~ns~~~le~~~~~~~~~~~----~~~~~vGpl~~~~~-~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~- 284 (456)
T 2c1x_A 211 LPKATAVFINSFEELDDSLTNDLKSKL----KTYLNIGPFNLITP-PPVVPNTTGCLQWLKERKPTSVVYISFGTVTTP- 284 (456)
T ss_dssp GGGSSCEEESSCGGGCHHHHHHHHHHS----SCEEECCCHHHHC----------CHHHHHHTSCTTCEEEEECCSSCCC-
T ss_pred hhhCCEEEECChHHHhHHHHHHHHhcC----CCEEEecCcccCcc-cccccchhhHHHHHhcCCCcceEEEecCccccC-
Confidence 46789999988654443 23321 25555553211100 000001122344444444555788888887643
Q ss_pred ChHHHHHHHHHhHhhccCCCCCeE-EEEEeCCCch----hHHhhhCCcEEEeCccCHHHHHHHHH--hcCEEEeCCCCCC
Q 011355 307 GHPLMFEALKQLLAENDTFRRSTV-FLVAGDGPWG----ARYRDLGTNVIVLGPLDQTRLAMFYN--AIDIFVNPTLRAQ 379 (488)
Q Consensus 307 g~~~ll~a~~~l~~~~~~~~~~~~-l~ivG~g~~~----~~~~~l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps~~~e 379 (488)
..+.+.+.+..+.+. +.+ +..+|..... ...+...+++.+.+++++. ++|. ++|+||. + .
T Consensus 285 ~~~~~~~~~~~l~~~------~~~~lw~~~~~~~~~l~~~~~~~~~~~~~v~~w~pq~---~vL~h~~~~~fvt---h-~ 351 (456)
T 2c1x_A 285 PPAEVVALSEALEAS------RVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQA---EVLAHEAVGAFVT---H-C 351 (456)
T ss_dssp CHHHHHHHHHHHHHH------TCCEEEECCGGGGGGSCTTHHHHHTTTEEEESCCCHH---HHHTSTTEEEEEE---C-C
T ss_pred CHHHHHHHHHHHHhc------CCeEEEEECCcchhhCCHHHHhhcCCceEEecCCCHH---HHhcCCcCCEEEe---c-C
Confidence 234444444444332 233 3445543211 1122346789999999853 5788 6778886 3 3
Q ss_pred CCChHHHHHHHcCCcEEEeCCCCccc---ceeecC-CceeEeCC---CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011355 380 GLDHTVLEAMLSGKPLMATRLASIVG---SVIVGT-DMGYLFSP---QVESVKKALYGIWADGREVLEKKGLVARKRG 450 (488)
Q Consensus 380 g~~~~~lEAma~G~PVI~~~~~~~~~---e~v~~~-~~g~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~ 450 (488)
| .++++||+++|+|+|+-...+-.. ..+.+. +.|..++. +.++++++|.+++++ ++ .+++++++++..
T Consensus 352 G-~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~-~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 352 G-WNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQ-EK-GKKLRENLRALR 426 (456)
T ss_dssp C-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHS-HH-HHHHHHHHHHHH
T ss_pred C-cchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCC-Cc-HHHHHHHHHHHH
Confidence 4 569999999999999987643110 245566 78888763 789999999999988 54 456666665554
No 59
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.62 E-value=6.6e-05 Score=74.24 Aligned_cols=131 Identities=16% Similarity=-0.001 Sum_probs=79.4
Q ss_pred CCcEEEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEE-EeCCCc-----------hhHH-hhhCCc--------
Q 011355 291 NRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLV-AGDGPW-----------GARY-RDLGTN-------- 349 (488)
Q Consensus 291 ~~~~~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~i-vG~g~~-----------~~~~-~~l~~~-------- 349 (488)
+++.+.+..|+... ...+.+.+.+..+.+ .+.++++ +|.+.. ...+ ..+.++
T Consensus 267 ~~~vvyvs~GS~~~-~~~~~~~~~~~al~~------~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 339 (480)
T 2vch_A 267 LGSVLYVSFGSGGT-LTCEQLNELALGLAD------SEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKR 339 (480)
T ss_dssp TTCEEEEECTTTCC-CCHHHHHHHHHHHHH------TTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTT
T ss_pred CCceEEEecccccC-CCHHHHHHHHHHHHh------cCCcEEEEECCccccccccccccccccchhhhcCHHHHHHhCCC
Confidence 44577888888753 233444444444443 2344444 443210 0111 123333
Q ss_pred -EEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc---cee-ecCCceeEeC-----C
Q 011355 350 -VIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG---SVI-VGTDMGYLFS-----P 419 (488)
Q Consensus 350 -V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~---e~v-~~~~~g~l~~-----~ 419 (488)
+.+.+++|+. ++|+.+++.++-++ .| -++++||+++|+|+|+-...+-.. ..+ +.-+.|..++ .
T Consensus 340 g~~v~~w~Pq~---~vL~h~~v~~fvtH--gG-~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~ 413 (480)
T 2vch_A 340 GFVIPFWAPQA---QVLAHPSTGGFLTH--CG-WNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGL 413 (480)
T ss_dssp EEEEESCCCHH---HHHHSTTEEEEEEC--CC-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSC
T ss_pred eEEEeCccCHH---HHhCCCCcCeEEec--cc-chhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCc
Confidence 4566799854 78999996433342 34 469999999999999987643110 233 4566777664 3
Q ss_pred -CHHHHHHHHHHHHhc
Q 011355 420 -QVESVKKALYGIWAD 434 (488)
Q Consensus 420 -d~~~la~~i~~ll~~ 434 (488)
+.++++++|.+++.+
T Consensus 414 ~~~~~l~~av~~vl~~ 429 (480)
T 2vch_A 414 VRREEVARVVKGLMEG 429 (480)
T ss_dssp CCHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHhcC
Confidence 789999999999984
No 60
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.58 E-value=3.6e-07 Score=83.04 Aligned_cols=240 Identities=10% Similarity=0.059 Sum_probs=126.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
|||+|-+...+. ...|.-.++..|+++|+ +|.+++....+......+.+...+.. .+... +....
T Consensus 1 mki~ir~Da~~~--IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~~~~~~g~~v~~l~~--------~d~~~-~~~~l 65 (282)
T 3hbm_A 1 MKVLFRSDSSSQ--IGFGHIKRDLVLAKQYS----DVSFACLPLEGSLIDEIPYPVYELSS--------ESIYE-LINLI 65 (282)
T ss_dssp CCEEEEECCBTT--TBSHHHHHHHHHHTTCS----SEEEEECCCTTCCGGGCCSCEEECSS--------SCHHH-HHHHH
T ss_pred CEEEEEEecCCC--ccccHHHHHHHHHHHHH----hCEEEEecCcHhHHHHCCCeEEEcCc--------cCHHH-HHHHH
Confidence 899999986543 44566677888888887 78888865433221112111111110 11111 12222
Q ss_pred HHhcCCCCCcEEEeCCcchHH----hhhcc-CCcEEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHHHHHHHHHHHhhh
Q 011355 157 TQNSTGKPFDVIHTESVGLRH----TRARN-LTNVVVSWHGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKF 231 (488)
Q Consensus 157 ~~~~~~~~~Dvv~~~~~~~~~----~~~~~-~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
... ++|++++.++.+.. .++.. .. .+..+-+.. +
T Consensus 66 ~~~----~~d~lIvD~Y~~~~~~~~~lk~~~~~-~i~~iDD~~-----------------------------------~- 104 (282)
T 3hbm_A 66 KEE----KFELLIIDHYGISVDDEKLIKLETGV-KILSFDDEI-----------------------------------K- 104 (282)
T ss_dssp HHH----TCSEEEEECTTCCHHHHHHHHHHHCC-EEEEECSSC-----------------------------------C-
T ss_pred HhC----CCCEEEEECCCCCHHHHHHHHHhcCc-EEEEEecCC-----------------------------------C-
Confidence 222 89999987654221 11111 12 344444420 0
Q ss_pred cCCccEEEEcChhhHHHHHHHhc--CCCCcEEEecCCccCCCcCCCcccchhhhhhh-CCCCCCcEEEEEEeeeccccCh
Q 011355 232 FPKYAHHVATSDHCGDVLKRIYM--IPEERVHVILNGVDEEVFKPDVAMGKDFKKKF-GIPENRSLVLGMAGRLVKDKGH 308 (488)
Q Consensus 232 ~~~~d~ii~~S~~~~~~~~~~~g--~~~~~i~vi~ngvd~~~~~~~~~~~~~~r~~~-~i~~~~~~~i~~~Grl~~~Kg~ 308 (488)
-..+|.++-.+-.... ..|. ++....... |.+..... .++.+.- ...++.+.+++++|..++..-.
T Consensus 105 ~~~~Dllin~~~~~~~---~~Y~~~~p~~~~~l~--G~~Y~~lR------~eF~~~~~~~r~~~~~ILv~~GG~d~~~l~ 173 (282)
T 3hbm_A 105 PHHCDILLNVNAYAKA---SDYEGLVPFKCEVRC--GFSYALIR------EEFYQEAKENRKKKYDFFICMGGTDIKNLS 173 (282)
T ss_dssp CCCCSEEEECSTTCCG---GGGTTTCC-CCEEEE--SGGGCCCC------HHHHHHTTCCCCCCEEEEEECCSCCTTCHH
T ss_pred cccCCEEEeCCcccch---hhccccCCCCCeEee--CCcccccC------HHHHHhhhhccccCCeEEEEECCCchhhHH
Confidence 1247888887654321 1131 232222333 33221111 1121110 0112233566778876544323
Q ss_pred HHHHHHHHHhHhhccCCCCCeEEEEEeCCC-chhHHhhh---CCcEEEeCccCHHHHHHHHHhcCEEEeCCCCCCCCChH
Q 011355 309 PLMFEALKQLLAENDTFRRSTVFLVAGDGP-WGARYRDL---GTNVIVLGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHT 384 (488)
Q Consensus 309 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~-~~~~~~~l---~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~ 384 (488)
..+++ .+.+ . .+ ..++.|.+. ..+.+++. ..++.+.++++ ++.++|++||++|.+ . |.+
T Consensus 174 ~~vl~---~L~~-~----~~-i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~~--~m~~~m~~aDlvI~~----g--G~T 236 (282)
T 3hbm_A 174 LQIAS---ELPK-T----KI-ISIATSSSNPNLKKLQKFAKLHNNIRLFIDHE--NIAKLMNESNKLIIS----A--SSL 236 (282)
T ss_dssp HHHHH---HSCT-T----SC-EEEEECTTCTTHHHHHHHHHTCSSEEEEESCS--CHHHHHHTEEEEEEE----S--SHH
T ss_pred HHHHH---Hhhc-C----CC-EEEEECCCchHHHHHHHHHhhCCCEEEEeCHH--HHHHHHHHCCEEEEC----C--cHH
Confidence 33333 3332 2 33 446677664 33444332 25899999966 999999999999982 2 479
Q ss_pred HHHHHHcCCcEEEeCC
Q 011355 385 VLEAMLSGKPLMATRL 400 (488)
Q Consensus 385 ~lEAma~G~PVI~~~~ 400 (488)
+.|++++|+|.|....
T Consensus 237 ~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 237 VNEALLLKANFKAICY 252 (282)
T ss_dssp HHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEEeC
Confidence 9999999999998764
No 61
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.54 E-value=4.2e-06 Score=87.60 Aligned_cols=186 Identities=11% Similarity=0.145 Sum_probs=117.2
Q ss_pred hcCCccEEEEcChhhHHHHHHHhcCCCCcEEEecCCccCCCcC--CCcccchhhhhhhCCCCCCcEEEEEEeeecccc--
Q 011355 231 FFPKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFK--PDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDK-- 306 (488)
Q Consensus 231 ~~~~~d~ii~~S~~~~~~~~~~~g~~~~~i~vi~ngvd~~~~~--~~~~~~~~~r~~~~i~~~~~~~i~~~Grl~~~K-- 306 (488)
...+.|.+++.|+...+.+.+.+++++.++.+++.+=....+. ........+++++++++++ .+|+|+-++....
T Consensus 475 ~~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~k-k~ILyaPT~r~~~~~ 553 (729)
T 3l7i_A 475 ETSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDK-KVIMYAPTWRDDEFV 553 (729)
T ss_dssp HHTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSC-EEEEECCCCCGGGCC
T ss_pred hhccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhCCCCCC-eEEEEeeeeeCCccc
Confidence 3578899999999999999998998777777665432111221 1223346788999998887 7788998875531
Q ss_pred --C-----hHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhH---HhhhCCcEEEeCccCHHHHHHHHHhcCEEEeCCC
Q 011355 307 --G-----HPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGAR---YRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTL 376 (488)
Q Consensus 307 --g-----~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~---~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 376 (488)
| ...-++.+.+... ++..+++-. +|.... .....+.+.-... ..++.++|..||++|.
T Consensus 554 ~~~~~~~~~~~~~~~l~~~l~------~~~~li~r~-Hp~~~~~~~~~~~~~~~~~~~~--~~di~~ll~~aD~lIT--- 621 (729)
T 3l7i_A 554 SKGKYLFELKIDLDNLYKELG------DDYVILLRM-HYLISNALDLSGYENFAIDVSN--YNDVSELFLISDCLIT--- 621 (729)
T ss_dssp GGGSSCCCCTTCHHHHHHHHT------TTEEEEECC-CHHHHTTCCCTTCTTTEEECTT--CSCHHHHHHTCSEEEE---
T ss_pred cccccccchhhHHHHHHHHcC------CCeEEEEec-CcchhccccccccCCcEEeCCC--CcCHHHHHHHhCEEEe---
Confidence 1 1122333433322 466666544 332111 1123344554444 3488999999999995
Q ss_pred CCCCCChHHHHHHHcCCcEEEeCCC---------CcccceeecCCceeEeCCCHHHHHHHHHHHHhc
Q 011355 377 RAQGLDHTVLEAMLSGKPLMATRLA---------SIVGSVIVGTDMGYLFSPQVESVKKALYGIWAD 434 (488)
Q Consensus 377 ~~eg~~~~~lEAma~G~PVI~~~~~---------~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll~~ 434 (488)
. ++.+++|++..++|||..... |.--+ ..+.-.|-++. |.++|.++|......
T Consensus 622 D---ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d-~~~~~pg~~~~-~~~eL~~~i~~~~~~ 683 (729)
T 3l7i_A 622 D---YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMN-YMEDLPGPIYT-EPYGLAKELKNLDKV 683 (729)
T ss_dssp S---SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSC-TTSSSSSCEES-SHHHHHHHHTTHHHH
T ss_pred e---chHHHHhHHhhCCCEEEecCCHHHHhhccCCcccC-hhHhCCCCeEC-CHHHHHHHHhhhhcc
Confidence 1 456999999999999987321 11101 11223455555 899999999887764
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=98.16 E-value=0.00014 Score=68.59 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=74.6
Q ss_pred hhhhhCCCCCCcEEEEEEeeeccccCh--HHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhh----C-CcEEEeC
Q 011355 282 FKKKFGIPENRSLVLGMAGRLVKDKGH--PLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDL----G-TNVIVLG 354 (488)
Q Consensus 282 ~r~~~~i~~~~~~~i~~~Grl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l----~-~~V~~~g 354 (488)
+.++.|++.+++++.+..|.-.+.|.. +.+.+.+..+.++ +.++++.|...+.+..+++ . ..+.+.|
T Consensus 175 ~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~------g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g 248 (349)
T 3tov_A 175 FYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL------GYKTVFFGGPMDLEMVQPVVEQMETKPIVATG 248 (349)
T ss_dssp HHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH------TCEEEECCCTTTHHHHHHHHHTCSSCCEECTT
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC------CCeEEEEeCcchHHHHHHHHHhcccccEEeeC
Confidence 445567776666777777865566665 4677777777664 3566778876655544442 2 3466778
Q ss_pred ccCHHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCC
Q 011355 355 PLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRL 400 (488)
Q Consensus 355 ~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~ 400 (488)
..+-.|+..+++.||++|..- + |..-+ |.++|+|+|+--.
T Consensus 249 ~~sl~e~~ali~~a~~~i~~D----s-G~~Hl-Aaa~g~P~v~lfg 288 (349)
T 3tov_A 249 KFQLGPLAAAMNRCNLLITND----S-GPMHV-GISQGVPIVALYG 288 (349)
T ss_dssp CCCHHHHHHHHHTCSEEEEES----S-HHHHH-HHTTTCCEEEECS
T ss_pred CCCHHHHHHHHHhCCEEEECC----C-CHHHH-HHhcCCCEEEEEC
Confidence 888899999999999999742 2 33444 9999999998643
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.83 E-value=3.2e-05 Score=67.26 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=53.4
Q ss_pred cEEEeCccCHHHHHHHHH-hcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc-------ceeecCCceeEeCCC
Q 011355 349 NVIVLGPLDQTRLAMFYN-AIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG-------SVIVGTDMGYLFSPQ 420 (488)
Q Consensus 349 ~V~~~g~v~~~~l~~~~~-~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~-------e~v~~~~~g~l~~~d 420 (488)
++...++++ ++.++|. .||++|. + .| ..++.|++++|+|.|.-..+...+ +.+.+.+.++.+ +
T Consensus 115 ~v~v~~f~~--~m~~~l~~~AdlvIs---h-aG-agTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~--~ 185 (224)
T 2jzc_A 115 KVIGFDFST--KMQSIIRDYSDLVIS---H-AG-TGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC--A 185 (224)
T ss_dssp EEEECCSSS--SHHHHHHHHCSCEEE---S-SC-HHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE--C
T ss_pred eEEEeeccc--hHHHHHHhcCCEEEE---C-Cc-HHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc--C
Confidence 566778865 9999999 9999997 3 34 569999999999999987653211 123333445554 5
Q ss_pred HHHHHHHHHHHH
Q 011355 421 VESVKKALYGIW 432 (488)
Q Consensus 421 ~~~la~~i~~ll 432 (488)
+++|+++|.++.
T Consensus 186 ~~~L~~~i~~l~ 197 (224)
T 2jzc_A 186 PTETGLIAGLRA 197 (224)
T ss_dssp SCTTTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777777763
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.68 E-value=0.0044 Score=57.78 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=79.6
Q ss_pred CcEEEEEEeeeccccChH--HHHHHHHHhHhhccCCCCCeEEEEE-eCCCchhHHhhh---CCcEEEeCccCHHHHHHHH
Q 011355 292 RSLVLGMAGRLVKDKGHP--LMFEALKQLLAENDTFRRSTVFLVA-GDGPWGARYRDL---GTNVIVLGPLDQTRLAMFY 365 (488)
Q Consensus 292 ~~~~i~~~Grl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~iv-G~g~~~~~~~~l---~~~V~~~g~v~~~~l~~~~ 365 (488)
++++.+..|.-.+.|... .+.+.+..+.+ .++++++. |...+.+..+++ .+++.+.|..+-.|+..++
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~------~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali 251 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLAD------SGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVL 251 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTT------TCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHH
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHH------CCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHH
Confidence 346777777666667654 66676666654 35677776 532233333332 2467788988899999999
Q ss_pred HhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccc--------ceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 366 NAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVG--------SVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 366 ~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~--------e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
+.||++|..- + |..=+ |.+.|+|+|+--.+..+. ..+..+... .... ++++..+++.+++++
T Consensus 252 ~~a~l~I~~D----S-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~-cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 252 AGAKFVVSVD----T-GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGN-ELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp HTCSEEEEES----S-HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGG-CGGGCCHHHHHHHHHHTTTT
T ss_pred HhCCEEEecC----C-cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcc-cccCCCHHHHHHHHHHHHHH
Confidence 9999999742 2 33444 777999999852111110 111111111 1233 788888888887765
No 65
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=95.70 E-value=0.15 Score=52.24 Aligned_cols=134 Identities=14% Similarity=0.180 Sum_probs=95.3
Q ss_pred CCCcEEEEEEeeeccccChHH-HHHHHHHh---Hhhc-----cC-----CCCCeEEEEEeCC-CchhHHh-------h--
Q 011355 290 ENRSLVLGMAGRLVKDKGHPL-MFEALKQL---LAEN-----DT-----FRRSTVFLVAGDG-PWGARYR-------D-- 345 (488)
Q Consensus 290 ~~~~~~i~~~Grl~~~Kg~~~-ll~a~~~l---~~~~-----~~-----~~~~~~l~ivG~g-~~~~~~~-------~-- 345 (488)
++. +..+++-|+..+|...+ ++..+..+ ++.. ++ . .+..+++.|+. |....-+ .
T Consensus 598 p~s-Lfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~-~P~~~IFaGKAaP~y~~aK~iIklI~~va 675 (879)
T 1ygp_A 598 DDT-LFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKY-PRKVSIFGGKSAPGYYMAKLIIKLINCVA 675 (879)
T ss_dssp GGC-EEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHS-CCEEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCe-eeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCC-CCeEEEEeccCCCCcHHHHHHHHHHHHHH
Confidence 334 88899999999999987 56554433 3330 00 0 36888888863 2221111 1
Q ss_pred --------hCC--cEEEeCccCHHHHHHHHHhcCEEEeCCCC-CCCCChHHHHHHHcCCcEEEeCCCCcccceeec--CC
Q 011355 346 --------LGT--NVIVLGPLDQTRLAMFYNAIDIFVNPTLR-AQGLDHTVLEAMLSGKPLMATRLASIVGSVIVG--TD 412 (488)
Q Consensus 346 --------l~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~~-~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~--~~ 412 (488)
..+ +|.|+...+-+-...++.+||+-.+-|+. -|..|..-+=+|..|.+.|++--|... |+.++ .+
T Consensus 676 ~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanv-Ei~e~vG~e 754 (879)
T 1ygp_A 676 DIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANV-EITREIGED 754 (879)
T ss_dssp HHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHH-HHHHHHCGG
T ss_pred HHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhH-HHHHHcCcc
Confidence 224 79999988777888899999999987762 488899999999999999999888877 66554 56
Q ss_pred ceeEeCCCHHHHHH
Q 011355 413 MGYLFSPQVESVKK 426 (488)
Q Consensus 413 ~g~l~~~d~~~la~ 426 (488)
++++|-.+++++.+
T Consensus 755 N~fiFG~~~~ev~~ 768 (879)
T 1ygp_A 755 NVFLFGNLSENVEE 768 (879)
T ss_dssp GSEEESCCHHHHHH
T ss_pred cEEEccCCHHHHHH
Confidence 88988765554443
No 66
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=93.75 E-value=2.6 Score=35.08 Aligned_cols=333 Identities=16% Similarity=0.151 Sum_probs=184.1
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-CCCc--eEEEecCCCCccCcchhHHHH
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPT-YPIS--SLYFHLSKPTAAGYLDQSIVW 152 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~~~~~~~~~ 152 (488)
.|+|+++... +....|+..+.++.-..+.+.||+|+++...+..-.... .... .+.+...+ .+..++
T Consensus 1 smricifmar---glegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsipvilak-------eydkal 70 (401)
T 1xv5_A 1 SMRICIFMAR---GLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTSSHDHKSFSIPVILAK-------EYDKAL 70 (401)
T ss_dssp CCEEEEEETT---CCCSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTTTSSSCTTTCEEECTTT-------CHHHHH
T ss_pred CceEEEEeec---cccccCceeeehhhhhhhhcCCcEEEEEEeccccccccccccCccccceeEehh-------hhHHHh
Confidence 3899888753 457789999999999999999999999988764433222 1111 12222221 222222
Q ss_pred HHHHHHhcCCCCCcEEEeCCcc--------hHHhh---hccCCc--EEEeeeCCcchhhhhhhhHhhhcCCCChhHHHHH
Q 011355 153 QQLQTQNSTGKPFDVIHTESVG--------LRHTR---ARNLTN--VVVSWHGIAYETIHSDIIQELLRTPEEPQAYALA 219 (488)
Q Consensus 153 ~~~~~~~~~~~~~Dvv~~~~~~--------~~~~~---~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (488)
++.. +.|++++++.. +..+. ....|. +++.-|+-.......+. .+.
T Consensus 71 ----klvn---dcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvlslrrnl--------------gle 129 (401)
T 1xv5_A 71 ----KLVN---DCDILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSLRRNL--------------GLE 129 (401)
T ss_dssp ----HHHT---SCSEEEEEECCBTTSCHHHHHHHHHHHHHSCTTSEEEEEECCCSHHHHTTBS--------------SHH
T ss_pred ----hhhc---cCcEEEEccCccchhHHHHHhhHHHHHhcCCCceEEEEEeccchhhhhhhhc--------------ChH
Confidence 2221 78999987632 11111 111121 67777774332221111 000
Q ss_pred HHHHHHHHHhhhcCCccEEEEcChh---hHHHHHHHhcCCCCcEEEecCCccCC----CcCCCcccchhhhhhhCCCCCC
Q 011355 220 ERASKVVEEVKFFPKYAHHVATSDH---CGDVLKRIYMIPEERVHVILNGVDEE----VFKPDVAMGKDFKKKFGIPENR 292 (488)
Q Consensus 220 ~~~~~~~~~~~~~~~~d~ii~~S~~---~~~~~~~~~g~~~~~i~vi~ngvd~~----~~~~~~~~~~~~r~~~~i~~~~ 292 (488)
...+++|.|+..|+. .+-.+.+.|. +.+.. ...+... .|.+. -+....|..+--.-.+
T Consensus 130 ----------etvrradvifshsdngdfnkvlmkewyp---etvsl-fddieeaptvynfqpp-mdivkvrstywkdvse 194 (401)
T 1xv5_A 130 ----------ETVRRADVIFSHSDNGDFNKVLMKEWYP---ETVSL-FDDIEEAPTVYNFQPP-MDIVKVRSTYWKDVSE 194 (401)
T ss_dssp ----------HHHHHCSEEEESCTTSHHHHTHHHHHSC---SSCCS-SSCCCCCCCEEECCCC-BCHHHHHHHHCCCGGG
T ss_pred ----------HhhhhhceEEecCCCCcHHHHHHHhhcc---chhhh-hcchhhCCceeccCCC-ceeeeeehhhhccHHH
Confidence 234678999998864 2233444442 21111 1111110 11121 1123344333211111
Q ss_pred -cE-EEEEEeeeccccChHHHHHHHHHhHhhccCCCCCeEEEEEeCC--CchhHHhh-----------------hC--Cc
Q 011355 293 -SL-VLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDG--PWGARYRD-----------------LG--TN 349 (488)
Q Consensus 293 -~~-~i~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g--~~~~~~~~-----------------l~--~~ 349 (488)
.. +=-++||-...||.-.+.+...++.+.. .-.-++-|-. |..-.+++ ++ ..
T Consensus 195 inmninrwigrtttwkgfyqmfdfhekflkpa-----gkstvmeglerspafiaikekgipyeyygnreidkmnlapnqp 269 (401)
T 1xv5_A 195 INMNINRWIGRTTTWKGFYQMFDFHEKFLKPA-----GKSTVMEGLERSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQP 269 (401)
T ss_dssp CEEEEEEEECCSCGGGCHHHHHHHHHHTTTTT-----TCEEEEECCCCSHHHHHHHHTTCCEEEECGGGGGGCCCSSSCC
T ss_pred hhcchhhhhcccchhHhHHHHhhHHHHhcCcc-----chhhhhhhhhcCCceEEEcccCCchhhcCcchhhhhcCCCCCc
Confidence 01 2237899899999999999888877632 2233444521 11111111 22 22
Q ss_pred EEEeCccCHHHHHHHHHhcCEEEeCCCC-----CCCCChHHHHHHHcCCcEEEe---------CCCCcccceeecCCcee
Q 011355 350 VIVLGPLDQTRLAMFYNAIDIFVNPTLR-----AQGLDHTVLEAMLSGKPLMAT---------RLASIVGSVIVGTDMGY 415 (488)
Q Consensus 350 V~~~g~v~~~~l~~~~~~adv~v~ps~~-----~eg~~~~~lEAma~G~PVI~~---------~~~~~~~e~v~~~~~g~ 415 (488)
..++.-.-..++.+-+..+.+.-..|.- ..+.-.+-+|--|||+-.|.- ++...+ +..++..-+
T Consensus 270 aqildcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntp--ltshdsgii 347 (401)
T 1xv5_A 270 AQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTP--LTSHDSGII 347 (401)
T ss_dssp EEEESCCCHHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCB--GGGSCCSCE
T ss_pred chhhhheecHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCc--ccccCCceE
Confidence 4555544467888889998887665531 235678899999999754432 222221 123334445
Q ss_pred EeCC-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHH
Q 011355 416 LFSP-QVESVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAA 462 (488)
Q Consensus 416 l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 462 (488)
+++. |.++--+.|.++..+ ...+.+-.++|+++.-++-+..-..+.
T Consensus 348 wfdendmestferikelssd-ralydrerekayeflyqhqdssfcfke 394 (401)
T 1xv5_A 348 WFDENDMESTFERIKELSSD-RALYDREREKAYEFLYQHQDSSFCFKE 394 (401)
T ss_dssp EECTTCHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHBHHHHHHH
T ss_pred EecCCchHHHHHHHHHhccc-hhhhhHHHHHHHHHHHhcccccchhHh
Confidence 6777 899999999999998 899999899999988665454444433
No 67
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=86.65 E-value=3.3 Score=36.25 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=29.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
++|||++..+. |=...-+..|+++|.+ +++|+|+++..+...
T Consensus 10 ~~m~ILlTNDD-------Gi~apGi~aL~~~l~~-~~~V~VVAP~~~~Sg 51 (261)
T 3ty2_A 10 PKLRLLLSNDD-------GVYAKGLAILAKTLAD-LGEVDVVAPDRNRSG 51 (261)
T ss_dssp -CCEEEEECSS-------CTTCHHHHHHHHHHTT-TSEEEEEEESSCCTT
T ss_pred CCCeEEEEcCC-------CCCCHHHHHHHHHHHh-cCCEEEEecCCCCcC
Confidence 56999888762 1123346688999987 799999999765443
No 68
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=85.71 E-value=6.1 Score=31.01 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=48.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeE-EEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHEL-HIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQ 153 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V-~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 153 (488)
..||++|+...-|. ..-..+..+.++.++.+.||+| .|+-..+.-....... .|.. ...++...|.
T Consensus 11 ~~~~~~ivv~~~Py---g~~~a~~Al~~A~aala~g~eV~~VFf~~DGV~~a~~~q---------~p~~-~~~~l~~~~~ 77 (140)
T 2d1p_A 11 GSMRFAIVVTGPAY---GTQQASSAFQFAQALIADGHELSSVFFYREGVYNANQLT---------SPAS-DEFDLVRAWQ 77 (140)
T ss_dssp CCCEEEEEECSCSS---SSSHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTC---------CCCT-TSCCHHHHHH
T ss_pred CceEEEEEEcCCCC---CcHHHHHHHHHHHHHHHCCCccCEEEEechHHHHHhcCC---------CCcc-ccCChHHHHH
Confidence 56999999865443 2344566789999999999999 8888775322211100 0111 1134555677
Q ss_pred HHHHHhcCCCCCcEEEeC
Q 011355 154 QLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 154 ~~~~~~~~~~~~Dvv~~~ 171 (488)
.+.... +.++..|.
T Consensus 78 ~La~~~----gv~l~vC~ 91 (140)
T 2d1p_A 78 QLNAQH----GVALNICV 91 (140)
T ss_dssp HHHHHH----CCEEEEEH
T ss_pred HHHHHc----CCEEEEeH
Confidence 664444 67776664
No 69
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=85.34 E-value=6.8 Score=34.11 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=28.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
.+++|++|+.+ ..-.+..+-..+..+.++|++|.+++.+.+..
T Consensus 2 ~~~~vL~v~aH------PDDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~ 44 (242)
T 2ixd_A 2 SGLHILAFGAH------ADDVEIGMAGTIAKYTKQGYEVGICDLTEADL 44 (242)
T ss_dssp CCCSEEEEESS------TTHHHHHHHHHHHHHHHTTCCEEEEEEECCTT
T ss_pred CCccEEEEEeC------CChHHHhHHHHHHHHHHCCCeEEEEEEcCCCC
Confidence 45789999863 23333333345556677899999998876543
No 70
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=83.48 E-value=1.8 Score=38.67 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=29.6
Q ss_pred CCCceEEEEEecCCCCCCCCCcHH-HHHHHHHHHHHHCCCeEEEEecCC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLE-RHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+++|||++|..+ | ...+.. ..+...++.|.+.||+|.++-...
T Consensus 19 ~m~~MKiLII~aH-P---~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~ 63 (280)
T 4gi5_A 19 YFQSMKVLLIYAH-P---EPRSLNGALKNFAIRHLQQAGHEVQVSDLYA 63 (280)
T ss_dssp ---CCEEEEEECC-S---CTTSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred hhhCCeEEEEEeC-C---CCccHHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 4588999999864 3 334433 344567788999999999987643
No 71
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=80.36 E-value=3.8 Score=31.72 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=31.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeE-EEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHEL-HIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V-~v~~~~~~ 121 (488)
||++++...-|. ..-..+..+.++.++.+.||+| .|+...+.
T Consensus 1 mk~~iiv~~~p~---~~~~~~~al~~a~a~~~~g~~v~~vff~~dG 43 (130)
T 2hy5_A 1 MKFALQINEGPY---QHQASDSAYQFAKAALEKGHEIFRVFFYHDG 43 (130)
T ss_dssp CEEEEEECSCTT---TSTHHHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred CEEEEEEeCCCC---CcHHHHHHHHHHHHHHhcCCeeCEEEEechH
Confidence 788888865433 2334567789999999999999 88887753
No 72
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=79.84 E-value=17 Score=27.86 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=62.0
Q ss_pred eEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHH----hcCEEEeCCCCCCCCChHHHHHHHc---CCcEE
Q 011355 329 TVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYN----AIDIFVNPTLRAQGLDHTVLEAMLS---GKPLM 396 (488)
Q Consensus 329 ~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~----~adv~v~ps~~~eg~~~~~lEAma~---G~PVI 396 (488)
.+++|+.+.+.. ..++..+..|..... .++....+. ..|+++.-..-++.-|..+++.+.. .+|+|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~--~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 81 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASS--STEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVI 81 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS--HHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCC--HHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 466777665432 122223344444433 556666665 5688766332234446666665543 67777
Q ss_pred EeCCCCcc---cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 397 ATRLASIV---GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 397 ~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
........ .+.+..|..+++..| +.+++..+|..+++.
T Consensus 82 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 82 ILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 64322211 134567788999999 999999999998875
No 73
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=79.60 E-value=20 Score=27.88 Aligned_cols=107 Identities=9% Similarity=0.014 Sum_probs=60.7
Q ss_pred CeEEEEEeCCCch-hHHhh-hCCcEEEeCccCHHHHHHHHHh---cCEEEeCCCCCCCCChHHHHHHH---cCCcEEEeC
Q 011355 328 STVFLVAGDGPWG-ARYRD-LGTNVIVLGPLDQTRLAMFYNA---IDIFVNPTLRAQGLDHTVLEAML---SGKPLMATR 399 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~~~~~-l~~~V~~~g~v~~~~l~~~~~~---adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~~ 399 (488)
..+++|+.+.+.. +.+.. +.....+...-+.++....+.. .|+++.-..-++.-|..+++.+. ..+|+|...
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSFDFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHhccCceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 3567777765432 22221 2222222222235666666654 38876633223444666666654 367777543
Q ss_pred CCCccc---ceeecC-CceeEeCC-CHHHHHHHHHHHHhc
Q 011355 400 LASIVG---SVIVGT-DMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 400 ~~~~~~---e~v~~~-~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.....+ +.+..| ..+++..| +.+++.++|..+++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 84 GNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp CGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 222111 334556 67899999 999999999999876
No 74
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=79.49 E-value=17 Score=27.97 Aligned_cols=106 Identities=8% Similarity=0.051 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCCch-h----HHhhhCCcEEEeCccCHHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHHc-----CCc
Q 011355 327 RSTVFLVAGDGPWG-A----RYRDLGTNVIVLGPLDQTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAMLS-----GKP 394 (488)
Q Consensus 327 ~~~~l~ivG~g~~~-~----~~~~l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma~-----G~P 394 (488)
...+++|+.+.+.. + .++..+-.|..... .++....+. ..|++|.-..-++.-|..+++.+.. ++|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGN--AIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESS--HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCC--HHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 35677777765432 2 22223333443333 556656555 3688766332234446778887764 578
Q ss_pred EEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 395 LMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 395 VI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
||.. ...... .+.+..|..+++..| +.++|...|..++..
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 7764 333211 123456788999999 999999999998865
No 75
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=79.37 E-value=16 Score=31.28 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=26.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
|+|++|+.+ ..-.+..+-.++..+.++|++|.+++.+.+..
T Consensus 2 ~~vL~v~aH------PDDe~l~~ggtia~~~~~G~~v~vv~lT~G~~ 42 (227)
T 1uan_A 2 LDLLVVAPH------PDDGELGCGGTLARAKAEGLSTGILDLTRGEM 42 (227)
T ss_dssp EEEEEEESS------TTHHHHHHHHHHHHHHHTTCCEEEEEEECCTT
T ss_pred ceEEEEEeC------CCcHHHhHHHHHHHHHhCCCcEEEEEEcCCCC
Confidence 688888863 22333333344555667899999988876443
No 76
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=78.56 E-value=11 Score=34.43 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=25.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++|||+|+.. ..+.....++|.+.||+|..+...+
T Consensus 21 ~~mrIvf~G~-----------~~fa~~~L~~L~~~~~~i~~Vvt~p 55 (329)
T 2bw0_A 21 QSMKIAVIGQ-----------SLFGQEVYCHLRKEGHEVVGVFTVP 55 (329)
T ss_dssp CCCEEEEECC-----------HHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CCCEEEEEcC-----------cHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 5699999842 3445567788888899987666544
No 77
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=77.88 E-value=2.5 Score=38.09 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=24.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||++... .|=++ ..|++.|.++||+|++++..
T Consensus 1 MkILVTGa-------tGfIG---~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 1 MRVLVGGG-------TGFIG---TALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 89876642 23233 36899999999999999764
No 78
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=75.84 E-value=23 Score=26.69 Aligned_cols=104 Identities=9% Similarity=0.014 Sum_probs=61.7
Q ss_pred eEEEEEeCCCch-h----HHhhhCC--cEEEeCccCHHHHHHHHHh---------cCEEEeCCCCCCCCChHHHHHHH--
Q 011355 329 TVFLVAGDGPWG-A----RYRDLGT--NVIVLGPLDQTRLAMFYNA---------IDIFVNPTLRAQGLDHTVLEAML-- 390 (488)
Q Consensus 329 ~~l~ivG~g~~~-~----~~~~l~~--~V~~~g~v~~~~l~~~~~~---------adv~v~ps~~~eg~~~~~lEAma-- 390 (488)
.+++|+.+.+.. + .++..+. .|..... .++....+.. .|+++.-...++.-|..+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~--~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 80 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRD--GMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSD 80 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECS--HHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECC--HHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcC
Confidence 356666654422 2 2222333 4444444 5677676664 67877633223334667777765
Q ss_pred ---cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 391 ---SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 391 ---~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.++|+|.. ...... .+.+..|..+++..| +.+++.+.|..++..
T Consensus 81 ~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 81 PTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp TTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred cccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHH
Confidence 35777764 332211 133456778999999 999999999988754
No 79
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=75.63 E-value=8.1 Score=28.71 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=26.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++|||++++. .....+..+..+-++..++|.++.+.+...
T Consensus 5 ~~mkIlL~C~------aGmSTsllv~km~~~a~~~gi~v~i~a~~~ 44 (108)
T 3nbm_A 5 KELKVLVLCA------GSGTSAQLANAINEGANLTEVRVIANSGAY 44 (108)
T ss_dssp CCEEEEEEES------SSSHHHHHHHHHHHHHHHHTCSEEEEEEET
T ss_pred cCceEEEECC------CCCCHHHHHHHHHHHHHHCCCceEEEEcch
Confidence 6899999996 222333345555566667799999987443
No 80
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=75.13 E-value=16 Score=33.15 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=24.8
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|++|||+|+.. ..+.....++|.+.||+|..+.+.+
T Consensus 5 ~~~mrivf~Gt-----------~~fa~~~L~~L~~~~~~v~~Vvt~p 40 (318)
T 3q0i_A 5 SQSLRIVFAGT-----------PDFAARHLAALLSSEHEIIAVYTQP 40 (318)
T ss_dssp --CCEEEEECC-----------SHHHHHHHHHHHTSSSEEEEEECCC
T ss_pred ccCCEEEEEec-----------CHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 35799999975 2344466688888899987766654
No 81
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=74.44 E-value=11 Score=30.44 Aligned_cols=69 Identities=16% Similarity=-0.003 Sum_probs=41.6
Q ss_pred HHHHhcCEEEeCCCCCCCCChHHHH---HHHcCCcEEEeCCC-----Ccccc-------eeec-------------CCce
Q 011355 363 MFYNAIDIFVNPTLRAQGLDHTVLE---AMLSGKPLMATRLA-----SIVGS-------VIVG-------------TDMG 414 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg~~~~~lE---Ama~G~PVI~~~~~-----~~~~e-------~v~~-------------~~~g 414 (488)
..+..||++|.--.-.+.=+.+.+| |.+.|+||++-... +...+ +.++ ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 5689999987632101222446677 88999999986322 11000 1010 0278
Q ss_pred eEeCCCHHHHHHHHHHHH
Q 011355 415 YLFSPQVESVKKALYGIW 432 (488)
Q Consensus 415 ~l~~~d~~~la~~i~~ll 432 (488)
.++. +.+++.++|.+.+
T Consensus 145 ~~~~-~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVS-SEEDLLEEIKQRL 161 (162)
T ss_dssp EEES-SHHHHHHHHHHTC
T ss_pred eEEe-CHHHHHHHHHHHh
Confidence 8887 8888888887654
No 82
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=73.22 E-value=6.3 Score=31.73 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=30.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++.. +..|..+..+..+++.|.+.|++|.++...
T Consensus 1 Mkv~IvY~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 1 MSVLIGYL-----SDYGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp -CEEEEEC-----TTSTTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CEEEEEEE-----CCChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 78888864 256888899999999999999999888654
No 83
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=73.06 E-value=28 Score=26.42 Aligned_cols=104 Identities=10% Similarity=0.082 Sum_probs=57.3
Q ss_pred eEEEEEeCCCch-hH----HhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH--------cCC
Q 011355 329 TVFLVAGDGPWG-AR----YRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML--------SGK 393 (488)
Q Consensus 329 ~~l~ivG~g~~~-~~----~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma--------~G~ 393 (488)
.+++|+.+.+.. .. ++..+..|..... .++....+.. .|+++.-..-+..-|..+++.+. ...
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~--~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~ 88 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTN--GLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRA 88 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESS--HHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECC--HHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCce
Confidence 456666654432 11 2122233444443 4555555553 57777633222333566777664 245
Q ss_pred cEEEeCCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 394 PLMATRLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 394 PVI~~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|+|..............+-.+++..| +.+++.++|..++..
T Consensus 89 ~ii~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 89 SIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp CCEEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 66654222222133344557899999 999999999988764
No 84
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=72.75 E-value=5.1 Score=29.87 Aligned_cols=39 Identities=8% Similarity=-0.028 Sum_probs=27.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+.|||++++.. ..| .+..+..+-+.+.+.|+++.+-+..
T Consensus 3 ~~mkIlvvC~~-----G~~-TSll~~kl~~~~~~~gi~~~i~~~~ 41 (109)
T 2l2q_A 3 GSMNILLVCGA-----GMS-TSMLVQRIEKYAKSKNINATIEAIA 41 (109)
T ss_dssp CCEEEEEESSS-----SCS-SCHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred CceEEEEECCC-----hHh-HHHHHHHHHHHHHHCCCCeEEEEec
Confidence 45999888862 222 2366667778888889987766554
No 85
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=72.73 E-value=18 Score=31.47 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
|||++..+. |=...-+..|+++|++.| +|+|+++..+...
T Consensus 2 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg 41 (251)
T 2phj_A 2 PTFLLVNDD-------GYFSPGINALREALKSLG-RVVVVAPDRNLSG 41 (251)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSCCTT
T ss_pred CEEEEECCC-------CCCCHHHHHHHHHHHhcC-CEEEEecCCCccC
Confidence 899888752 112345678999999988 9999999865443
No 86
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=72.71 E-value=25 Score=27.53 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=41.3
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHc---CCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLS---GKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
.|++++-..-++.-|..+++.+.. .+|||........+ +.+..|..+++..| +.+++.++|..++.
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 477666332233345666665543 57777643222121 34466788899999 99999999988764
No 87
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=72.61 E-value=9.1 Score=29.99 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=28.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..||++++. +.|. .--..-.+..++..|.+.||+|+|-...
T Consensus 5 ~~m~~LilL-GCPE---~Pvq~p~~lYl~~~Lk~~G~~v~VA~np 45 (157)
T 1kjn_A 5 STGKALMVL-GCPE---SPVQIPLAIYTSHKLKKKGFRVTVTANP 45 (157)
T ss_dssp -CCEEEEEC-CCSC---STTHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred cceeeeEEe-cCCC---CcchhhHHHHHHHHHHhcCCeeEEecCH
Confidence 468988886 3443 2222345668899999999999998764
No 88
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=72.45 E-value=29 Score=26.32 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=60.8
Q ss_pred CCeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CCc
Q 011355 327 RSTVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GKP 394 (488)
Q Consensus 327 ~~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~P 394 (488)
...+++|+.+.+.. ..++..+-.|..... .++....+.. .|+++.-...++.-|..+++.+.. .+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADS--GGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS--HHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 34566777655422 122223333443333 5566666654 466665322233446677777754 467
Q ss_pred EEEe-CCCCc--ccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 395 LMAT-RLASI--VGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 395 VI~~-~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
||.. ..... ..+.+..|..+++..| +.+++.+.|..++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 7754 22221 1134455667899999 999999999988764
No 89
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=72.16 E-value=26 Score=27.13 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=62.6
Q ss_pred CeEEEEEeCCCch-----hHHhhhCC--cEEEeCccCHHHHHHHHH-----------hcCEEEeCCCCCCCCChHHHHHH
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGT--NVIVLGPLDQTRLAMFYN-----------AIDIFVNPTLRAQGLDHTVLEAM 389 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~--~V~~~g~v~~~~l~~~~~-----------~adv~v~ps~~~eg~~~~~lEAm 389 (488)
..+++|+.+.+.. ..+++.+. .|..... .++..+.+. ..|+++.-..-++.-|..+++.+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~--~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTD--GTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLV 81 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESS--HHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 4567777765432 22223333 4555554 567666663 46777663322344467778777
Q ss_pred Hc-----CCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 390 LS-----GKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 390 a~-----G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
.. ++|+|........+ +.+..|..+++..| +.+++.++|.++..
T Consensus 82 r~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 82 KENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 65 56777643222211 34566788999999 99999999988743
No 90
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=71.87 E-value=12 Score=32.11 Aligned_cols=36 Identities=6% Similarity=0.217 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~ 119 (488)
.+|||+|+.+. +| ..+..+.++|.+. +++|..+...
T Consensus 21 ~~~rI~~l~SG-------~g--~~~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 21 HMIRIGVLISG-------SG--TNLQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp TCEEEEEEESS-------CC--HHHHHHHHHHHTTSSSEEEEEEEES
T ss_pred CCcEEEEEEeC-------Cc--HHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 35799999751 12 3466788888776 5787655554
No 91
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=70.96 E-value=27 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++|||+|+.. ..+.....++|.+.||+|..+.+.+
T Consensus 2 ~~mrIvf~Gt-----------~~fa~~~L~~L~~~~~~i~~Vvt~p 36 (314)
T 1fmt_A 2 ESLRIIFAGT-----------PDFAARHLDALLSSGHNVVGVFTQP 36 (314)
T ss_dssp CCCEEEEEEC-----------SHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCEEEEEec-----------CHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 5799999985 1233455677777899987666553
No 92
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=70.90 E-value=35 Score=26.54 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=61.0
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH-----cCCcE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML-----SGKPL 395 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma-----~G~PV 395 (488)
..+++|+.+.+.. ..+++.+-.|..... .++....+.. .|++++-..-+..-|..+++.+. ..+|+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRN--GREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESS--HHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCC--HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 3456666654322 122222333433333 5566565553 57766633223444677777775 35788
Q ss_pred EEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 396 MATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 396 I~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|........+ +.+..|..+++..| +.+++..+|..++..
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 7643222221 34556788999999 999999999998864
No 93
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=70.81 E-value=19 Score=32.67 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=26.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|+|++.. ..|+.+. .+++.|.++|++|.++....
T Consensus 19 ~~~~vlVTG-------asG~iG~---~l~~~L~~~g~~V~~~~r~~ 54 (330)
T 2pzm_A 19 SHMRILITG-------GAGCLGS---NLIEHWLPQGHEILVIDNFA 54 (330)
T ss_dssp TCCEEEEET-------TTSHHHH---HHHHHHGGGTCEEEEEECCS
T ss_pred CCCEEEEEC-------CCCHHHH---HHHHHHHHCCCEEEEEECCC
Confidence 457777664 4577766 57888999999999988754
No 94
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=70.65 E-value=23 Score=26.95 Aligned_cols=105 Identities=11% Similarity=0.076 Sum_probs=59.5
Q ss_pred CeEEEEEeCCCch-h----HHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc--CCcEEEe
Q 011355 328 STVFLVAGDGPWG-A----RYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS--GKPLMAT 398 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~----~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~--G~PVI~~ 398 (488)
..+++|+.+.+.. + .++..+-.|..... .++....+.. .|+++.-..-+..-|..+++.+.. .+|+|..
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYN--CEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESS--HHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 4567777765422 1 22222233433332 4555555553 577665221122235667776653 5777754
Q ss_pred -CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 399 -RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 399 -~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
...... .+.+..|..+++..| +.+++...+..++..
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 332211 134556788999999 999999999888764
No 95
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=70.27 E-value=26 Score=30.56 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=28.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
.||||+..+. |=...-+..|+++|++.| +|+|+++..+...
T Consensus 1 ~M~ILlTNDD-------Gi~apGi~aL~~~L~~~g-~V~VVAP~~~~Sg 41 (254)
T 2v4n_A 1 SMRILLSNDD-------GVHAPGIQTLAKALREFA-DVQVVAPDRNRSG 41 (254)
T ss_dssp CCEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSCCTT
T ss_pred CCeEEEEcCC-------CCCCHHHHHHHHHHHhCC-cEEEEeeCCCCcC
Confidence 4899888752 112234667899998875 9999999765443
No 96
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=69.48 E-value=35 Score=25.95 Aligned_cols=106 Identities=7% Similarity=-0.060 Sum_probs=64.4
Q ss_pred CCeEEEEEeCCCch-hH----HhhhCC--cEEEeCccCHHHHHHHHHh-------cCEEEeCCCCCCCCChHHHHHHHc-
Q 011355 327 RSTVFLVAGDGPWG-AR----YRDLGT--NVIVLGPLDQTRLAMFYNA-------IDIFVNPTLRAQGLDHTVLEAMLS- 391 (488)
Q Consensus 327 ~~~~l~ivG~g~~~-~~----~~~l~~--~V~~~g~v~~~~l~~~~~~-------adv~v~ps~~~eg~~~~~lEAma~- 391 (488)
...+++|+.+.+.. .. ++..+. .|..... .++....+.. .|++++-..-++.-|..+++.+..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~--~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTS--GNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESS--HHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCC--HHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 34567777765432 22 222333 3444443 6677677765 688776433234456777777654
Q ss_pred ------CCcEEEeCCCCccc---ceeecC-CceeEeCC-CHHHHHHHHHHHHhc
Q 011355 392 ------GKPLMATRLASIVG---SVIVGT-DMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 392 ------G~PVI~~~~~~~~~---e~v~~~-~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
..|+|........+ +....+ ..+++..| +.++|.++|.+....
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 56777643332221 233455 67899999 999999999998876
No 97
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=69.40 E-value=18 Score=32.84 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=25.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
++|||+|+... .+.....++|.+.||+|..+.+.++
T Consensus 1 ~~mrivf~Gtp-----------~fa~~~L~~L~~~~~~v~~Vvt~pd 36 (314)
T 3tqq_A 1 MSLKIVFAGTP-----------QFAVPTLRALIDSSHRVLAVYTQPD 36 (314)
T ss_dssp CCCEEEEEECS-----------GGGHHHHHHHHHSSSEEEEEECCCC
T ss_pred CCcEEEEECCC-----------HHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 36999999751 1233556888888999877766543
No 98
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=69.34 E-value=34 Score=25.85 Aligned_cols=105 Identities=9% Similarity=-0.019 Sum_probs=61.5
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CCcE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GKPL 395 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~PV 395 (488)
..+++|+.+.+.. ..+++.+-.|..... .++....+.. .|+++.-..-++.-|..+++.+.. .+|+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~--~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHS--AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECS--HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECC--HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 3456666654322 122222333443333 4555555543 567666332234446777877764 6788
Q ss_pred EEeCCCCccc----ceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 396 MATRLASIVG----SVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 396 I~~~~~~~~~----e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|........+ +....|..+++..| +.++|..+|..+++.
T Consensus 84 i~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp EEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8754332211 23445678899999 999999999999875
No 99
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=69.13 E-value=34 Score=25.74 Aligned_cols=105 Identities=11% Similarity=0.011 Sum_probs=63.8
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHHc---CCcEEE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAMLS---GKPLMA 397 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma~---G~PVI~ 397 (488)
..+++|+.+.+.. ..+++....|..... .++....+. ..|+++.-..-++.-|..+++.+.. .+|+|.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~--~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGD--GEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESS--HHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECC--HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 4567777765432 222222334555444 556655555 4677766432234446677776654 577876
Q ss_pred eCCCCcc---cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 398 TRLASIV---GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 398 ~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
....... .+.+..|..+++..| +.+++.++|.++++.
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 5332221 134567788999999 999999999999875
No 100
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=68.94 E-value=18 Score=30.53 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=49.2
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC--CeEEEEecCCCCCCCC----CCCCceEEEecCCCCccCcch
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG--HELHIFTASCLNCSFP----TYPISSLYFHLSKPTAAGYLD 147 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~ 147 (488)
|.++||+++.+. +| ..+..+.+++.+.+ ++|..+.++..+.... ..+++...+..... .....
T Consensus 5 m~~~ri~vl~SG-------~g--snl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~--~~r~~ 73 (209)
T 4ds3_A 5 MKRNRVVIFISG-------GG--SNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDF--ASKEA 73 (209)
T ss_dssp -CCEEEEEEESS-------CC--HHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGS--SSHHH
T ss_pred CCCccEEEEEEC-------Cc--HHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCcccc--CCHHH
Confidence 567899998851 22 34556777776543 5777666543222211 13444433321110 01111
Q ss_pred hHHHHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 148 QSIVWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
+...+....... +||+|++..+. ++..+....+.-++-+|.
T Consensus 74 ~d~~~~~~l~~~----~~Dliv~agy~~il~~~~l~~~~~~~iNiHp 116 (209)
T 4ds3_A 74 HEDAILAALDVL----KPDIICLAGYMRLLSGRFIAPYEGRILNIHP 116 (209)
T ss_dssp HHHHHHHHHHHH----CCSEEEESSCCSCCCHHHHGGGTTCEEEEES
T ss_pred HHHHHHHHHHhc----CCCEEEEeccccCcCHHHHhhccCCeEEECC
Confidence 122222222222 89999997643 222222222335677776
No 101
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=68.85 E-value=9.8 Score=29.88 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=31.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++.. +..|..+..+..+++.|.+.|++|.++....
T Consensus 2 ~ki~I~y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 2 SKVLIVFG-----SSTGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp CEEEEEEE-----CSSSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CeEEEEEE-----CCCchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 57887764 2567788889999999999999999987664
No 102
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=68.78 E-value=6.3 Score=33.34 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=26.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++. ..|+..+ .+++.|.++|++|.+++...
T Consensus 1 MkvlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIG-------ATGRAGS---RILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEc-------CCchhHH---HHHHHHHhCCCEEEEEEcCc
Confidence 7877765 3577766 67888999999999998764
No 103
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=67.97 E-value=34 Score=25.26 Aligned_cols=76 Identities=9% Similarity=-0.003 Sum_probs=47.3
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH-----cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML-----SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKK 426 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma-----~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~ 426 (488)
.++..+.+. ..|+++.=..-++.-|..+++.+. ..+|+|.. ..+... .+.+..|..+++..| +.+++.+
T Consensus 35 ~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~ 114 (122)
T 3gl9_A 35 GQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIE 114 (122)
T ss_dssp HHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHH
Confidence 444444444 356766533223444677777774 35787754 333211 123456788999999 9999999
Q ss_pred HHHHHHh
Q 011355 427 ALYGIWA 433 (488)
Q Consensus 427 ~i~~ll~ 433 (488)
.+.++++
T Consensus 115 ~i~~~l~ 121 (122)
T 3gl9_A 115 EVKHLLN 121 (122)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9998764
No 104
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=67.85 E-value=14 Score=27.22 Aligned_cols=40 Identities=13% Similarity=-0.053 Sum_probs=29.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..+||++++. ..-|.+..+..+-+.+.++|.++.+.....
T Consensus 2 ~mkkIll~Cg------~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~ 41 (106)
T 1e2b_A 2 EKKHIYLFSS------AGMSTSLLVSKMRAQAEKYEVPVIIEAFPE 41 (106)
T ss_dssp CCEEEEEECS------SSTTTHHHHHHHHHHHHHSCCSEEEEEECS
T ss_pred CCcEEEEECC------CchhHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 3468999986 223444667788888889999998887664
No 105
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=66.95 E-value=11 Score=31.31 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=30.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||++.|++ .....|-.+.+.+|+..|+++|+.|.++-.+
T Consensus 1 M~vi~v~s----~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLN----PKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECC----SSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEe----CCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 77777765 2344566778899999999999999999775
No 106
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=66.80 E-value=7.3 Score=30.58 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=29.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++.. +..|..+..+..+++.|.+.|++|.++...
T Consensus 1 mki~iiy~-----S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~ 38 (147)
T 1f4p_A 1 PKALIVYG-----STTGNTEYTAETIARELADAGYEVDSRDAA 38 (147)
T ss_dssp CEEEEEEE-----CSSSHHHHHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CeEEEEEE-----CCcCHHHHHHHHHHHHHHhcCCeeEEEehh
Confidence 78888864 245777788888899998889999888654
No 107
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=66.65 E-value=7 Score=33.19 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=26.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++. ..|+..+ .+++.|.++|++|.+++...
T Consensus 1 MkilVtG-------atG~iG~---~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 1 MKIAVLG-------ATGRAGS---AIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp CEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEc-------CCCHHHH---HHHHHHHHCCCEEEEEEecc
Confidence 7877665 4577766 67889999999999998754
No 108
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=66.63 E-value=41 Score=25.71 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=57.6
Q ss_pred CeEEEEEeCCCch-h----HHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH-------cCC
Q 011355 328 STVFLVAGDGPWG-A----RYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML-------SGK 393 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~----~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma-------~G~ 393 (488)
..+++|+.+.+.. . .+++.+-.|..... .++..+.+.. .|++++=..-++.-|..+++.+. ..+
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~ 91 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNG--AEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYT 91 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESS--HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCC--HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCC
Confidence 3566666654422 1 12222233433332 4555555553 57766632223444677777764 236
Q ss_pred cEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 394 PLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 394 PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|+|........+ +....|-.+++..| +.+++.++|.++...
T Consensus 92 pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 92 PVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred eEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 777643322221 23456788999999 999999999988654
No 109
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=66.39 E-value=40 Score=25.47 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=49.4
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKK 426 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~ 426 (488)
.++..+.+.. .|++++=..-++.-|..+++.+.. .+|+|.....+..+ +.+..|..+++..| +.+++..
T Consensus 37 ~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~ 116 (136)
T 3t6k_A 37 GEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVY 116 (136)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHH
Confidence 4555555543 577666332234446677777643 57887643222221 23456788999999 9999999
Q ss_pred HHHHHHhc
Q 011355 427 ALYGIWAD 434 (488)
Q Consensus 427 ~i~~ll~~ 434 (488)
.|..++..
T Consensus 117 ~i~~~l~~ 124 (136)
T 3t6k_A 117 RVKNILAR 124 (136)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999876
No 110
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=66.23 E-value=19 Score=30.51 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=49.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCCCC----CCCCceEEEecCCCCccCcchhH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTASCLNCSFP----TYPISSLYFHLSKPTAAGYLDQS 149 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~ 149 (488)
++|||+++.+. +| ..+..+.+++.+ .+++|..+.++..+.... ..+++...+..... .....+.
T Consensus 4 ~~~riavl~SG-------~G--snl~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~--~~r~~~d 72 (215)
T 3tqr_A 4 EPLPIVVLISG-------NG--TNLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIPTHIIPHEEF--PSRTDFE 72 (215)
T ss_dssp CCEEEEEEESS-------CC--HHHHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGS--SSHHHHH
T ss_pred CCcEEEEEEeC-------Cc--HHHHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccc--CchhHhH
Confidence 57899999851 23 234466777655 357877766654322111 13444443322110 0011111
Q ss_pred HHHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
..+....+.. +||+|++..+. ++..+....+.-+.-+|.
T Consensus 73 ---~~~~~~l~~~-~~Dliv~agy~~il~~~~l~~~~~~~iNiHp 113 (215)
T 3tqr_A 73 ---STLQKTIDHY-DPKLIVLAGFMRKLGKAFVSHYSGRMINIHP 113 (215)
T ss_dssp ---HHHHHHHHTT-CCSEEEESSCCSCCCHHHHHHTTTSEEEEES
T ss_pred ---HHHHHHHHhc-CCCEEEEccchhhCCHHHHhhccCCeEEeCc
Confidence 2223333333 89999997643 222222222224667775
No 111
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=66.21 E-value=12 Score=28.01 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=30.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CC-eEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GH-ELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~-~V~v~~~~~~ 121 (488)
||++++..+-|. ........+.++..+.+. |+ +|.++...+.
T Consensus 2 ~k~~ii~~~~p~---~~~~~~~al~~a~~~~~~~g~~~v~vff~~dg 45 (117)
T 1jx7_A 2 QKIVIVANGAPY---GSESLFNSLRLAIALREQESNLDLRLFLMSDA 45 (117)
T ss_dssp CEEEEEECCCTT---TCSHHHHHHHHHHHHHHHCTTCEEEEEECGGG
T ss_pred cEEEEEEcCCCC---CcHHHHHHHHHHHHHHhcCCCccEEEEEEchH
Confidence 378888765433 233345578899999988 99 9999988764
No 112
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=65.34 E-value=16 Score=30.99 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=22.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC--eEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH--ELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~ 119 (488)
|||+++.++ +| ..+..+.++|.+.++ +|..+..+
T Consensus 2 ~rI~vl~SG-------~g--~~~~~~l~~l~~~~~~~~i~~Vvs~ 37 (216)
T 2ywr_A 2 LKIGVLVSG-------RG--SNLQAIIDAIESGKVNASIELVISD 37 (216)
T ss_dssp EEEEEEECS-------CC--HHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred CEEEEEEeC-------Cc--HHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 699998751 12 356678888888777 66555444
No 113
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=65.30 E-value=43 Score=25.47 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=61.9
Q ss_pred CeEEEEEeCCCch-----hHHhhhCC--cEEEeCccCHHHHHHHHHh------------cCEEEeCCCCCCCCChHHHHH
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGT--NVIVLGPLDQTRLAMFYNA------------IDIFVNPTLRAQGLDHTVLEA 388 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~--~V~~~g~v~~~~l~~~~~~------------adv~v~ps~~~eg~~~~~lEA 388 (488)
..+++|+.+.+.. ..++..+. .|..... .++....+.. .|+++.-..-++.-|..+++.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~--~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 83 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCIT--GDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECS--HHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECC--HHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence 3456666654422 22222333 4555444 5566666653 577766332233346677777
Q ss_pred HH-----cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 389 ML-----SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 389 ma-----~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
+. .++|+|.. ...... .+.+..|..+++..| +.+++.+.|..+++.
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 75 45677764 332211 133456778999999 999999999988754
No 114
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=65.11 E-value=46 Score=25.74 Aligned_cols=77 Identities=8% Similarity=0.039 Sum_probs=46.3
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEeCCCCcc---cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMATRLASIV---GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+. ..|+++.-..-++.-|..+++.+. .++|||........ .+.+..|..+++..| +.+++...|
T Consensus 36 ~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i 115 (155)
T 1qkk_A 36 ATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSA 115 (155)
T ss_dssp HHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Confidence 344444433 357766532222333556666554 36788764322211 134456778999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 116 ~~~~~~ 121 (155)
T 1qkk_A 116 RRAEEK 121 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 115
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=64.86 E-value=45 Score=25.60 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=47.6
Q ss_pred HHHHHHHHH---------hcCEEEeCCCCCCCCChHHHHHHHc-----CCcEEEe-CCCCcc--cceeecCCceeEeCC-
Q 011355 358 QTRLAMFYN---------AIDIFVNPTLRAQGLDHTVLEAMLS-----GKPLMAT-RLASIV--GSVIVGTDMGYLFSP- 419 (488)
Q Consensus 358 ~~~l~~~~~---------~adv~v~ps~~~eg~~~~~lEAma~-----G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~- 419 (488)
.++....+. ..|++++=..-+..-|..+++.+.. ++|||.. ...... .+.+..|..+++..|
T Consensus 43 ~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~ 122 (149)
T 1i3c_A 43 GLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSR 122 (149)
T ss_dssp HHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCC
Confidence 456666665 3688776332223346677777753 4677654 332211 133456788999999
Q ss_pred CHHHHHHHHHHHHh
Q 011355 420 QVESVKKALYGIWA 433 (488)
Q Consensus 420 d~~~la~~i~~ll~ 433 (488)
+.+++.++|..++.
T Consensus 123 ~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 123 NLKDLFKMVQGIES 136 (149)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888754
No 116
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=64.78 E-value=46 Score=25.60 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=42.2
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHc---CCcEEEe-CCCCc--ccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLS---GKPLMAT-RLASI--VGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~-~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.|++++-..-++.-|..+++.+.. .+|+|.. ..... ..+.+..|..+++..| +.+++.++|..++..
T Consensus 67 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 466555322233445666666543 5677654 32221 1134566788999999 999999999999875
No 117
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=64.53 E-value=11 Score=32.96 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=30.7
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHH-HHHHHHHHHHHCCCeEEEEecCC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLER-HALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++..|||++|..+ +..+|... .+..+++.+.+.|++|.++-...
T Consensus 31 ~~~~mkIliI~GS----~r~~s~t~~La~~~~~~l~~~g~eve~idL~~ 75 (247)
T 2q62_A 31 STHRPRILILYGS----LRTVSYSRLLAEEARRLLEFFGAEVKVFDPSG 75 (247)
T ss_dssp CCSCCEEEEEECC----CCSSCHHHHHHHHHHHHHHHTTCEEEECCCTT
T ss_pred cCCCCeEEEEEcc----CCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhc
Confidence 4456899999863 23456554 44556777877899999987654
No 118
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=64.35 E-value=47 Score=25.60 Aligned_cols=105 Identities=11% Similarity=0.029 Sum_probs=59.7
Q ss_pred CeEEEEEeCCCch-----hHHhhh-CC-cEEEeCccCHHHHHHHHHh---cCEEEeCCCCCCCCChHHHHHHHc---CCc
Q 011355 328 STVFLVAGDGPWG-----ARYRDL-GT-NVIVLGPLDQTRLAMFYNA---IDIFVNPTLRAQGLDHTVLEAMLS---GKP 394 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l-~~-~V~~~g~v~~~~l~~~~~~---adv~v~ps~~~eg~~~~~lEAma~---G~P 394 (488)
..+++|+.+.+.. ..+++. +. .|..... .++....+.. .|+++.-..-++.-|..+++.+.. ++|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~--~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAET--VSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESS--HHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecC--HHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 4567777765432 222233 22 3334444 5677777765 677766332223346667776653 678
Q ss_pred EEEeCCCCcc---cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 395 LMATRLASIV---GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 395 VI~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
+|........ .+.+..|..+++..| +.+++.++|..++..
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 8764322211 134456778899999 999999999998875
No 119
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=63.75 E-value=14 Score=28.61 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=30.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..+|++|+..+-| ...........++......||+|.++...+
T Consensus 14 ~~~kl~ii~~sgP---~~~~~~~~al~lA~~A~a~g~eV~vFf~~d 56 (134)
T 3mc3_A 14 QXXXILIVVTHGP---EDLDRTYAPLFMASISASMEYETSVFFMIX 56 (134)
T ss_dssp CCCEEEEEECCCG---GGTHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ccceEEEEEccCC---CCHHHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 3468888886422 223445567788888888999999998875
No 120
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=63.62 E-value=9.7 Score=31.62 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=26.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||+++. ..|+..+ .+++.|.++|++|.+++....
T Consensus 4 ~~ilVtG-------atG~iG~---~l~~~l~~~g~~V~~~~r~~~ 38 (206)
T 1hdo_A 4 KKIAIFG-------ATGQTGL---TTLAQAVQAGYEVTVLVRDSS 38 (206)
T ss_dssp CEEEEES-------TTSHHHH---HHHHHHHHTTCEEEEEESCGG
T ss_pred CEEEEEc-------CCcHHHH---HHHHHHHHCCCeEEEEEeChh
Confidence 7777765 3466665 678889999999999987653
No 121
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=63.52 E-value=3.6 Score=33.82 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=42.1
Q ss_pred HHHHhcCEEEe-CCCCCCCCC--hHHHHHHHcCCcEEEeCCCCcccceeecC-CceeEeCCCHHHHHHHHHHHHhc
Q 011355 363 MFYNAIDIFVN-PTLRAQGLD--HTVLEAMLSGKPLMATRLASIVGSVIVGT-DMGYLFSPQVESVKKALYGIWAD 434 (488)
Q Consensus 363 ~~~~~adv~v~-ps~~~eg~~--~~~lEAma~G~PVI~~~~~~~~~e~v~~~-~~g~l~~~d~~~la~~i~~ll~~ 434 (488)
-+...||.+|. |. |+| ..+.||+..++||++-+.-+..+..+.+. ...+.+..|++++.+.+.+.++.
T Consensus 103 ~m~~~sda~IvlpG----g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 103 INALSSNVLVAVGM----GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CCGGGCSEEEEESC----CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHHhCCEEEEecC----CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 34557888665 43 333 45778889999999988633221222222 22333333899999998887754
No 122
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=63.38 E-value=12 Score=31.23 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|||++|..+ .|..+..+..+++.+.+.|++|.++....
T Consensus 4 mmkilii~~S------~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 4 KPNILVLFYG------YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CCEEEEEECC------SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CcEEEEEEeC------ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 4799999862 45566777788888888899999987654
No 123
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=63.13 E-value=14 Score=30.76 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|||+++..+ ..|-.+..+..+++.+.+.|++|.++....
T Consensus 5 M~kilii~~S-----~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 5 SPYILVLYYS-----RHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CCEEEEEECC-----SSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred cceEEEEEeC-----CCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 3599999863 345666777888889988999999987654
No 124
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=62.68 E-value=44 Score=24.65 Aligned_cols=105 Identities=9% Similarity=0.015 Sum_probs=58.4
Q ss_pred CeEEEEEeCCCch-h----HHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH---cCCcEEE
Q 011355 328 STVFLVAGDGPWG-A----RYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML---SGKPLMA 397 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~----~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma---~G~PVI~ 397 (488)
+.+++++.+.+.. + .++..+-.|..... .++....+.. .|+++.-..-+..-|..+++.+. ..+|+|.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~--~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQS--AEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESC--HHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCC--HHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 3456666655432 1 12222333433332 4555555543 46766522212333566666664 3578776
Q ss_pred e-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 398 T-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 398 ~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
. ...... .+.+..|..+++..| +.+++.+++..++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 4 333211 134456788999999 999999999988764
No 125
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=62.52 E-value=34 Score=27.43 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=26.3
Q ss_pred HHHHHhcCEEEeC---CCCCCCCChHHHH---HHHcCCcEEEeC
Q 011355 362 AMFYNAIDIFVNP---TLRAQGLDHTVLE---AMLSGKPLMATR 399 (488)
Q Consensus 362 ~~~~~~adv~v~p---s~~~eg~~~~~lE---Ama~G~PVI~~~ 399 (488)
...+..||++|.- ..-.+.=+.+..| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 5889999998763 2111222457777 789999999854
No 126
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=62.35 E-value=13 Score=33.04 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=25.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
++|||+++. ..|+.+. .+++.|.++||+|.+++.
T Consensus 4 M~m~ilVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r 37 (287)
T 3sc6_A 4 MKERVIITG-------ANGQLGK---QLQEELNPEEYDIYPFDK 37 (287)
T ss_dssp -CEEEEEES-------TTSHHHH---HHHHHSCTTTEEEEEECT
T ss_pred ceeEEEEEC-------CCCHHHH---HHHHHHHhCCCEEEEecc
Confidence 347777765 3466665 578889889999999876
No 127
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=62.17 E-value=11 Score=32.31 Aligned_cols=40 Identities=8% Similarity=0.078 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCCCCCCcHH-HHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLE-RHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++|..+ +..+|.. ..+..+++.|.+.|++|.++-...
T Consensus 2 mkiLiI~gs----pr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 2 KKVLIVYAH----QEPKSFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CEEEEEECC----SCTTSHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CEEEEEEeC----CCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 899999863 2345544 455566778888899999998765
No 128
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=62.07 E-value=24 Score=25.45 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=48.9
Q ss_pred CcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH-----cCCcEEEe-CCCCcccceeecCCceeEeCC
Q 011355 348 TNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML-----SGKPLMAT-RLASIVGSVIVGTDMGYLFSP 419 (488)
Q Consensus 348 ~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma-----~G~PVI~~-~~~~~~~e~v~~~~~g~l~~~ 419 (488)
-+|..... .++....+.. .|+++.-...++.-|..+++.+. .++|+|.. +..... +....|..+++..|
T Consensus 26 ~~v~~~~~--~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~-~~~~~g~~~~l~kp 102 (119)
T 2j48_A 26 FKVIWLVD--GSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD-PLLTAQASAILSKP 102 (119)
T ss_dssp CEEEEESC--HHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS-HHHHHHCSEECSSC
T ss_pred cEEEEecC--HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch-hhhhcCHHHhccCC
Confidence 34444333 4555555543 57766533222334567777775 45677653 333322 44455677888888
Q ss_pred -CHHHHHHHHHHHHh
Q 011355 420 -QVESVKKALYGIWA 433 (488)
Q Consensus 420 -d~~~la~~i~~ll~ 433 (488)
+.+++.+.+..++.
T Consensus 103 ~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 103 LDPQLLLTTLQGLCP 117 (119)
T ss_dssp STTHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHhc
Confidence 99999998887653
No 129
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=61.85 E-value=21 Score=32.45 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=25.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
+.|||+|+... .+.....++|.+.||+|..+...++.
T Consensus 3 ~mmrIvf~Gtp-----------~fa~~~L~~L~~~~~~v~~Vvt~pd~ 39 (317)
T 3rfo_A 3 AMIKVVFMGTP-----------DFSVPVLRRLIEDGYDVIGVVTQPDR 39 (317)
T ss_dssp TTSEEEEECCS-----------TTHHHHHHHHHHTTCEEEEEECCCCC
T ss_pred CceEEEEEeCC-----------HHHHHHHHHHHHCCCcEEEEEeCCCc
Confidence 45899999751 12335567788889998877765533
No 130
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=61.84 E-value=10 Score=32.99 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=27.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||+++|+. ..||... .+++.|.++|++|.++....
T Consensus 1 mk~vlVTG------as~gIG~---~~a~~l~~~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISG------CATGIGA---ATRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCCc
Confidence 67777774 5677776 58889999999999887653
No 131
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=61.75 E-value=7.8 Score=32.81 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||+++. ..|+.++ .+++.|.+.|++|.++.....
T Consensus 1 M~ilItG-------atG~iG~---~l~~~L~~~g~~V~~~~R~~~ 35 (219)
T 3dqp_A 1 MKIFIVG-------STGRVGK---SLLKSLSTTDYQIYAGARKVE 35 (219)
T ss_dssp CEEEEES-------TTSHHHH---HHHHHHTTSSCEEEEEESSGG
T ss_pred CeEEEEC-------CCCHHHH---HHHHHHHHCCCEEEEEECCcc
Confidence 7877765 3577766 678899999999999987754
No 132
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=61.44 E-value=50 Score=24.89 Aligned_cols=105 Identities=7% Similarity=-0.022 Sum_probs=62.4
Q ss_pred CeEEEEEeCCCch-----hHHhh-hCCc-EEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CC
Q 011355 328 STVFLVAGDGPWG-----ARYRD-LGTN-VIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GK 393 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~-l~~~-V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~ 393 (488)
..+++|+.+.+.. ..+++ .+-. |..... .++....+.. .|+++.-..-++.-|..+++.+.. ++
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYN--PFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECS--HHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECC--HHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 4567777765422 22333 2333 444444 5566666554 577665332233346677777764 56
Q ss_pred cEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 394 PLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 394 PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|+|.. ...... .+.+..|..+++..| +.+++.++|..++..
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 77754 333221 134456778999999 999999999998875
No 133
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=61.37 E-value=48 Score=24.66 Aligned_cols=77 Identities=13% Similarity=-0.000 Sum_probs=48.7
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CCcEEEeCCCCcc--cceeecCCceeEeCC-CHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GKPLMATRLASIV--GSVIVGTDMGYLFSP-QVESVKKA 427 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~PVI~~~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~ 427 (488)
.++....+.. .|+++.-..-++.-|..+++.+.. ++|||........ .+....|..+++..| +.+++.++
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 115 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQ 115 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHH
Confidence 5566555543 567666332234446677777664 6788764222111 133456677899999 99999999
Q ss_pred HHHHHhc
Q 011355 428 LYGIWAD 434 (488)
Q Consensus 428 i~~ll~~ 434 (488)
|..+++.
T Consensus 116 i~~~l~~ 122 (133)
T 3nhm_A 116 LHALLAR 122 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999875
No 134
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=60.92 E-value=17 Score=30.60 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|||++|..+ ..|-.+..+..+++.+.+.|++|.++....
T Consensus 5 ~mmkilii~~S-----~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 5 APVKLAIVFYS-----STGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCCEEEEEECC-----SSSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCeEEEEEEC-----CCChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 35799999852 245566777888889988999999987654
No 135
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=60.45 E-value=52 Score=24.84 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=61.1
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHHh---cCEEEeCCCCCC-CCChHHHHHHH--cCCcEE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYNA---IDIFVNPTLRAQ-GLDHTVLEAML--SGKPLM 396 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~~---adv~v~ps~~~e-g~~~~~lEAma--~G~PVI 396 (488)
+.+++|+.+.+.. ..+++.+-.|.... +.++....+.. .|+++.-..-++ .-|..+++.+. ..+|+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIAL--TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEES--SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEec--ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 4566777765432 22222333444333 35566666643 578766332223 34566666654 367887
Q ss_pred Ee-CCCC--cccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 397 AT-RLAS--IVGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 397 ~~-~~~~--~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.. .... ...+.+..|..+++..| +.+++.+.|..++..
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 64 2222 11134556778999999 999999999998875
No 136
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=59.99 E-value=57 Score=25.12 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=46.8
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH---cCCcEEEeCCCCccc---ceeecC-CceeEeCC-CHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML---SGKPLMATRLASIVG---SVIVGT-DMGYLFSP-QVESVKKA 427 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~~~~~~~~---e~v~~~-~~g~l~~~-d~~~la~~ 427 (488)
.++....+.. .|+++.-..-++.-|..+++.+. ..+|||........+ +.+..| -.+++..| +.++|..+
T Consensus 47 ~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~ 126 (153)
T 3hv2_A 47 ATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLA 126 (153)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHH
Confidence 4444444443 46666533223344566666654 367887643332221 234455 57899999 99999999
Q ss_pred HHHHHhc
Q 011355 428 LYGIWAD 434 (488)
Q Consensus 428 i~~ll~~ 434 (488)
|..++..
T Consensus 127 i~~~l~~ 133 (153)
T 3hv2_A 127 LRQALEH 133 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 137
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=59.94 E-value=27 Score=33.42 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHCCCeEEEEecCC
Q 011355 98 HALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 98 ~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
....+++++++.|++|.++....
T Consensus 17 ~a~~i~~aa~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 17 IALRALRTIKEMGKKAICVYSEA 39 (446)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEGG
T ss_pred HHHHHHHHHHHcCCEEEEEEcCc
Confidence 45689999999999999987654
No 138
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=59.76 E-value=17 Score=32.34 Aligned_cols=43 Identities=23% Similarity=0.161 Sum_probs=30.7
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHH-HHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERH-ALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~-~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..+|||++|..+ +..+|.... +..+++.+.+.|++|.++-...
T Consensus 56 ~~~mKILiI~GS----~R~~S~T~~La~~~~~~l~~~G~eveiidL~d 99 (279)
T 2fzv_A 56 APPVRILLLYGS----LRARSFSRLAVEEAARLLQFFGAETRIFDPSD 99 (279)
T ss_dssp CSCCEEEEEESC----CSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTT
T ss_pred CCCCEEEEEEeC----CCCCCHHHHHHHHHHHHHhhCCCEEEEEehhc
Confidence 457899999863 344665544 4456777887899999987654
No 139
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=59.21 E-value=35 Score=29.54 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=27.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|+++|+. ..+|..+ .+++.|.++|++|.++.....
T Consensus 8 k~~lVTG------as~gIG~---aia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 8 RVFIVTG------ASSGLGA---AVTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp CEEEEES------TTSHHHH---HHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCChH
Confidence 6677774 5677776 688999999999998876543
No 140
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=59.03 E-value=7.1 Score=32.63 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCC--hHHHHHHHcCCcEEEeCCCCcccce----eecC------C-ceeEeCCCHHHHH
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLD--HTVLEAMLSGKPLMATRLASIVGSV----IVGT------D-MGYLFSPQVESVK 425 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~--~~~lEAma~G~PVI~~~~~~~~~e~----v~~~------~-~g~l~~~d~~~la 425 (488)
+--.-+...||++|... .|+| ..+.||+..|+||++-+..+.-.+. +.++ . ..+.+..|++++.
T Consensus 110 ~Rk~~m~~~sda~Ivlp---GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~ 186 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSIG---GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAV 186 (195)
T ss_dssp HHHHHHHTTCSEEEEES---CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHH
T ss_pred HHHHHHHHhCCEEEEec---CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHH
Confidence 34456677899976522 2333 4578899999999999755432122 1211 1 1233333888888
Q ss_pred HHHHHH
Q 011355 426 KALYGI 431 (488)
Q Consensus 426 ~~i~~l 431 (488)
+.|.++
T Consensus 187 ~~l~~~ 192 (195)
T 1rcu_A 187 QIIEQI 192 (195)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 877653
No 141
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=58.98 E-value=9.3 Score=35.14 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=26.2
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|.+|||+++. ..|+.++ .+++.|.+.||+|.+++...
T Consensus 7 ~M~~~~IlVtG-------atG~iG~---~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 7 PSPKGRVLIAG-------ATGFIGQ---FVATASLDAHRPTYILARPG 44 (346)
T ss_dssp ----CCEEEEC-------TTSHHHH---HHHHHHHHTTCCEEEEECSS
T ss_pred CCCCCeEEEEC-------CCcHHHH---HHHHHHHHCCCCEEEEECCC
Confidence 34557888776 3466665 57788889999999998765
No 142
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=58.87 E-value=56 Score=24.62 Aligned_cols=77 Identities=8% Similarity=-0.050 Sum_probs=45.7
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH-----cCCcEEEeCCCCcc---cceeecCCceeEeCC-CHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML-----SGKPLMATRLASIV---GSVIVGTDMGYLFSP-QVESVKK 426 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma-----~G~PVI~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~ 426 (488)
.++....+. ..|+++.-..-++.-|..+++.+. .++|+|........ .+.+..|..+++..| +.+++.+
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 114 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLS 114 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHH
Confidence 556555554 357766633223334566777665 46788764222111 134556778999999 9999999
Q ss_pred HHHHHHhc
Q 011355 427 ALYGIWAD 434 (488)
Q Consensus 427 ~i~~ll~~ 434 (488)
+|..++..
T Consensus 115 ~i~~~~~~ 122 (140)
T 3n53_A 115 RIEIHLRT 122 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998875
No 143
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=58.76 E-value=54 Score=24.48 Aligned_cols=105 Identities=9% Similarity=0.117 Sum_probs=62.2
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHHh---cCEEEeCCCCCCCCChHHHHHHHc----CCcE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYNA---IDIFVNPTLRAQGLDHTVLEAMLS----GKPL 395 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~~---adv~v~ps~~~eg~~~~~lEAma~----G~PV 395 (488)
..+++|+.+.+.. ..+++.+-.|..... .++....+.. .|+++.-..-++.-|..+++.+.. .+|+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADG--AEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESS--HHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCC--HHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 4567777765432 222333344444333 5555555543 567665332234456777877754 3677
Q ss_pred EEeCCCCcc---cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 396 MATRLASIV---GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 396 I~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|........ .+.+..|..+++..| +.++|.++|.++...
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 764322211 134556788999999 999999999998876
No 144
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=58.55 E-value=12 Score=32.12 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=27.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|||+++. ..||.++ .+++.|.++|++|.+++...
T Consensus 20 ~~~~ilVtG-------atG~iG~---~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 20 QGMRVLVVG-------ANGKVAR---YLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp -CCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEESSG
T ss_pred CCCeEEEEC-------CCChHHH---HHHHHHHhCCCeEEEEECCh
Confidence 457777665 4577776 57888999999999998764
No 145
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=58.30 E-value=21 Score=27.19 Aligned_cols=77 Identities=10% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHHHHHh---cCEEEeCCCCC-CCCChHHHHHHHc-----CCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHH
Q 011355 358 QTRLAMFYNA---IDIFVNPTLRA-QGLDHTVLEAMLS-----GKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESV 424 (488)
Q Consensus 358 ~~~l~~~~~~---adv~v~ps~~~-eg~~~~~lEAma~-----G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~l 424 (488)
.++....+.. .|+++.-..-+ +.-|..+++.+.. .+|||........+ +.+..|..+++..| +.++|
T Consensus 38 ~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l 117 (140)
T 3lua_A 38 LKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRL 117 (140)
T ss_dssp HHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHH
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHH
Confidence 3444444433 56666533222 2234556665544 67887643222111 33456788999999 99999
Q ss_pred HHHHHHHHhc
Q 011355 425 KKALYGIWAD 434 (488)
Q Consensus 425 a~~i~~ll~~ 434 (488)
.++|..++..
T Consensus 118 ~~~i~~~~~~ 127 (140)
T 3lua_A 118 ENSVRSVLKI 127 (140)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 146
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=58.21 E-value=16 Score=28.45 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=31.3
Q ss_pred ce-EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 76 LL-KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 76 ~m-kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.| |++++...-|. ..-..+..+.++.++...|++|.|+...+.
T Consensus 4 ~Mkk~~ivv~~~P~---g~~~~~~al~~a~a~~a~~~~v~Vff~~DG 47 (136)
T 2hy5_B 4 VVKKFMYLNRKAPY---GTIYAWEALEVVLIGAAFDQDVCVLFLDDG 47 (136)
T ss_dssp -CCEEEEEECSCTT---TSSHHHHHHHHHHHHGGGCCEEEEEECGGG
T ss_pred chhEEEEEEeCCCC---CcHHHHHHHHHHHHHHhCCCCEEEEEEhHH
Confidence 46 58888865443 233456678899999999999999988764
No 147
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=58.05 E-value=13 Score=32.10 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=25.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 1 Mk~vlVtG------asg~iG~---~l~~~L~~~g~~V~~~~r~~ 35 (255)
T 2dkn_A 1 MSVIAITG------SASGIGA---ALKELLARAGHTVIGIDRGQ 35 (255)
T ss_dssp -CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEeC------CCcHHHH---HHHHHHHhCCCEEEEEeCCh
Confidence 55566664 5577776 57888999999999987654
No 148
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=58.04 E-value=27 Score=29.58 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=23.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~ 120 (488)
|||+++..+ +| ..+..+.++|.+. +++|..+.+..
T Consensus 4 ~ki~vl~sG-------~g--~~~~~~l~~l~~~~l~~~I~~Vit~~ 40 (212)
T 3av3_A 4 KRLAVFASG-------SG--TNFQAIVDAAKRGDLPARVALLVCDR 40 (212)
T ss_dssp EEEEEECCS-------SC--HHHHHHHHHHHTTCCCEEEEEEEESS
T ss_pred cEEEEEEEC-------Cc--HHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 689888751 12 2456778888776 68887666553
No 149
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=57.99 E-value=9.8 Score=32.57 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=26.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||+++|+. ..||.++ .+++.|.++|++|.++....
T Consensus 1 Mk~vlVTG------as~gIG~---~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITG------ASSGLGA---ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEES------TTSHHHH---HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEec------CCchHHH---HHHHHHHHCCCEEEEEeCCH
Confidence 77778875 5678776 68889999999998887653
No 150
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=57.98 E-value=9.4 Score=32.90 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
+.+|||+||.. ...|+. |+..|.+.||+|..+..
T Consensus 4 ~~~mkI~IIG~-----G~~G~s------LA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 4 APRLRVGIFDD-----GSSTVN------MAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCCEEEEECC-----SCCCSC------HHHHHHHTTCEEEECSS
T ss_pred CCCcEEEEEee-----CHHHHH------HHHHHHHCCCEEEEecC
Confidence 35799999985 256664 88999999999887755
No 151
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=57.92 E-value=55 Score=24.27 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=61.0
Q ss_pred CeEEEEEeCCCch-----hHHhhhCC-cEEEeCccCHHHHHHHHH---hcCEEEeCCCCCCCCChHHHHHHHc-----CC
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGT-NVIVLGPLDQTRLAMFYN---AIDIFVNPTLRAQGLDHTVLEAMLS-----GK 393 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~-~V~~~g~v~~~~l~~~~~---~adv~v~ps~~~eg~~~~~lEAma~-----G~ 393 (488)
..+++|+.+.+.. ..+++.+- .|..... .++....+. ..|+++.=..-++.-|..+++.+.. .+
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~--~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEH--GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS--HHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCC--HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 4566777765422 12222332 2444333 444444443 3677775332234446788887754 56
Q ss_pred cEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 394 PLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 394 PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|||.. ...... .+.+..|-.+++..| +.+++.++|..++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 88764 332211 134566788999999 999999999998764
No 152
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=57.47 E-value=18 Score=30.55 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=28.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++||++-.. ...| ..+..++++.|.+.|++|+++.+..
T Consensus 4 ~k~IllgvT------Gaia-a~k~~~ll~~L~~~g~eV~vv~T~~ 41 (209)
T 3zqu_A 4 PERITLAMT------GASG-AQYGLRLLDCLVQEEREVHFLISKA 41 (209)
T ss_dssp CSEEEEEEC------SSSC-HHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred CCEEEEEEE------CHHH-HHHHHHHHHHHHHCCCEEEEEECcc
Confidence 457877764 2233 3457899999999999999998764
No 153
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=57.43 E-value=14 Score=33.60 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=27.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|||++.. ..|+.++ .+++.|.++||+|.+++...
T Consensus 12 ~~M~ilVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 47 (342)
T 2x4g_A 12 AHVKYAVLG-------ATGLLGH---HAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp CCCEEEEES-------TTSHHHH---HHHHHHHHTTCEEEEEECTT
T ss_pred cCCEEEEEC-------CCcHHHH---HHHHHHHHCCCEEEEEecCh
Confidence 457877775 3566665 57888989999999998754
No 154
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=57.25 E-value=36 Score=30.70 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=23.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||+|+.. ..+.....++|.+.||+|..+.+.++
T Consensus 1 mrivf~gt-----------~~fa~~~L~~L~~~~~~i~~Vvt~~d 34 (305)
T 2bln_A 1 MKTVVFAY-----------HDMGCLGIEALLAAGYEISAIFTHTD 34 (305)
T ss_dssp CEEEEEEC-----------HHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CEEEEEEc-----------CHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 78998875 23444566778788999877766543
No 155
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=57.18 E-value=63 Score=24.76 Aligned_cols=77 Identities=10% Similarity=-0.011 Sum_probs=47.5
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHHc---CCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAMLS---GKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++..+.+. ..|+++.-..-++.-|..+++.+.. .+|||.. ...... .+.+..|..+++..| +.+++.++|
T Consensus 50 ~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 129 (152)
T 3eul_A 50 GAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAV 129 (152)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHH
Confidence 334444443 4577665322234446667766653 4677654 332211 134566788999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 130 ~~~~~~ 135 (152)
T 3eul_A 130 LDCAKG 135 (152)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 999886
No 156
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=56.70 E-value=50 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+|++.. ..|+.+. .+++.|.++|++|.++....
T Consensus 22 ~~vlVTG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 55 (333)
T 2q1w_A 22 KKVFITG-------ICGQIGS---HIAELLLERGDKVVGIDNFA 55 (333)
T ss_dssp CEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEECCS
T ss_pred CEEEEeC-------CccHHHH---HHHHHHHHCCCEEEEEECCC
Confidence 5655553 4577666 57888989999999997654
No 157
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=56.52 E-value=48 Score=28.85 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=27.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+++|+. ..||+.+ .+++.|.++|++|.++....
T Consensus 28 ~k~vlVTG------as~gIG~---aia~~l~~~G~~V~~~~r~~ 62 (260)
T 3un1_A 28 QKVVVITG------ASQGIGA---GLVRAYRDRNYRVVATSRSI 62 (260)
T ss_dssp CCEEEESS------CSSHHHH---HHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCCh
Confidence 36777774 5678776 68899999999999887654
No 158
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=56.37 E-value=19 Score=30.92 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFT 117 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 117 (488)
.+||.++|+. .....|=......|+++|+++|+.|..+=
T Consensus 2 ~~mk~i~Itg----t~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 2 NAMKKFFIIG----TDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TTCEEEEEEE----SSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEe----CCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 4689888886 33556777788899999999999998864
No 159
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=56.24 E-value=10 Score=31.97 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=27.8
Q ss_pred ceEEEEEecCCCCCCCCCcHHHH--HHHHHHHHHHCCCeEEEEecCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERH--ALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~--~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.+||++-.+ ||...+ ...+++.|.+.|++|.++.+...
T Consensus 5 ~k~IllgiT--------Gsiaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 5 GKRIGFGFT--------GSHCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp TCEEEEEEC--------SCGGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CCEEEEEEE--------ChHHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 357877764 333444 67999999999999999987754
No 160
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=56.23 E-value=66 Score=24.71 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=58.1
Q ss_pred CeEEEEEeCCCch-h----HHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH---cCCcEEE
Q 011355 328 STVFLVAGDGPWG-A----RYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML---SGKPLMA 397 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~----~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma---~G~PVI~ 397 (488)
..+++|+.+.+.. . .++..+-.|..... .++....+.. .|+++.-..-++.-|..+++.+. ..+|||.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTS--PLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESC--HHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCC--HHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 4566666654422 1 22222333443333 4566565553 57766532222333556666654 3678776
Q ss_pred eCCCCccc---ceeecC-CceeEeCC-CHHHHHHHHHHHHhc
Q 011355 398 TRLASIVG---SVIVGT-DMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 398 ~~~~~~~~---e~v~~~-~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.......+ +.+..+ ..+++..| +.+++...|..++..
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 85 ISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 43222111 223344 67899999 999999999998865
No 161
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=56.06 E-value=35 Score=28.84 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=47.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCC----CCCceEEEecCCCCccCcchhHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFPT----YPISSLYFHLSKPTAAGYLDQSI 150 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~ 150 (488)
|||+++.+ . +| ..+..+.+++.+. +++|..+.+......... .+++...+.... +.-..
T Consensus 1 ~ri~vl~S------g-~g--snl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~------~~~r~ 65 (212)
T 1jkx_A 1 MNIVVLIS------G-NG--SNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA------FDSRE 65 (212)
T ss_dssp CEEEEEES------S-CC--HHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGG------CSSHH
T ss_pred CEEEEEEE------C-Cc--HHHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCccc------ccchh
Confidence 68999885 1 23 2455677777665 578766665542221111 334433322111 11111
Q ss_pred HH-HHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 151 VW-QQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 151 ~~-~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
.+ ..+....+.. +||+|++..++ ++..+....+.-++-+|.
T Consensus 66 ~~~~~~~~~l~~~-~~Dliv~agy~~il~~~~l~~~~~~~iNiHp 109 (212)
T 1jkx_A 66 AYDRELIHEIDMY-APDVVVLAGFMRILSPAFVSHYAGRLLNIHP 109 (212)
T ss_dssp HHHHHHHHHHGGG-CCSEEEESSCCSCCCHHHHHHTTTSEEEEES
T ss_pred hccHHHHHHHHhc-CCCEEEEeChhhhCCHHHHhhccCCEEEEcc
Confidence 11 1222333333 89999997653 222222222324667775
No 162
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=55.66 E-value=12 Score=32.34 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=29.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++ +. ....|-.+.+.+|+..|+++|+.|.++-.+.
T Consensus 1 mkI~v-s~-----kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAV-AG-----KGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEE-EC-----SSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEE-ec-----CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 78888 53 1334555678899999999999999998876
No 163
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=55.56 E-value=15 Score=30.52 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=25.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+|||++.. ..||..+ .+++.|. +|++|.++....
T Consensus 2 ~kM~vlVtG-------asg~iG~---~~~~~l~-~g~~V~~~~r~~ 36 (202)
T 3d7l_A 2 NAMKILLIG-------ASGTLGS---AVKERLE-KKAEVITAGRHS 36 (202)
T ss_dssp CSCEEEEET-------TTSHHHH---HHHHHHT-TTSEEEEEESSS
T ss_pred CCcEEEEEc-------CCcHHHH---HHHHHHH-CCCeEEEEecCc
Confidence 358866554 4577776 5788888 899999887653
No 164
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=55.41 E-value=17 Score=30.42 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=28.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~ 120 (488)
|||++-.. ...|+ ....++++.|.+. |++|+++.+..
T Consensus 1 ~~IllgvT------Gsiaa-~k~~~ll~~L~~~~g~~V~vv~T~~ 38 (197)
T 1sbz_A 1 MKLIVGMT------GATGA-PLGVALLQALREMPNVETHLVMSKW 38 (197)
T ss_dssp CEEEEEEC------SSSCH-HHHHHHHHHHHTCTTCEEEEEECHH
T ss_pred CEEEEEEe------ChHHH-HHHHHHHHHHHhccCCEEEEEECch
Confidence 68877775 23344 4588999999999 99999998753
No 165
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=55.33 E-value=59 Score=23.87 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=59.3
Q ss_pred CeEEEEEeCCCch-----hHHhhhCC-cEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CCc
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGT-NVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GKP 394 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~-~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~P 394 (488)
..+++|+.+.+.. ..++..+- .|..... .++....+.. .|+++.-..-+..-|..+++.+.. .+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~--~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ 81 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAED--GVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALP 81 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS--HHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCc
Confidence 4566677665422 12222222 3444333 4555555543 577665322233346777887764 467
Q ss_pred EEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 395 LMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 395 VI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
+|.. ...... .+.+..|..+++..| +.+++.+++..++.
T Consensus 82 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 82 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 7654 332211 134456778999999 99999999988764
No 166
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=55.18 E-value=13 Score=31.17 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=29.2
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
.+||++-.. ..+|.-....++++.|.+.|++|+++.+....
T Consensus 7 ~k~I~lgiT------Gs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~ 47 (201)
T 3lqk_A 7 GKHVGFGLT------GSHCTYHEVLPQMERLVELGAKVTPFVTHTVQ 47 (201)
T ss_dssp TCEEEEECC------SCGGGGGGTHHHHHHHHHTTCEEEEECSSCSC
T ss_pred CCEEEEEEE------ChHHHHHHHHHHHHHHhhCCCEEEEEEChhHH
Confidence 457877764 22232215889999999999999999887543
No 167
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=55.14 E-value=99 Score=26.36 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=42.9
Q ss_pred hcCEEEeCCCCCCCCChHHHHHHHc---CCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 367 AIDIFVNPTLRAQGLDHTVLEAMLS---GKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 367 ~adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
..|++++=-.-++.-|..+++.+.. .+|||........+ +.+..|..+++..| +.+++..+|..++.
T Consensus 67 ~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 67 RPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3577665322233446677776643 46777643222111 34566788999999 99999999999875
No 168
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=55.06 E-value=15 Score=33.40 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=29.5
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
.++|||+++...... .....-.....++++|.+.||+|.++..
T Consensus 11 ~~~~~v~vl~gg~s~--E~~vsl~s~~~v~~al~~~g~~v~~i~~ 53 (317)
T 4eg0_A 11 KRFGKVAVLFGGESA--EREVSLTSGRLVLQGLRDAGIDAHPFDP 53 (317)
T ss_dssp GGGCEEEEECCCSST--THHHHHHHHHHHHHHHHHTTCEEEEECT
T ss_pred hhcceEEEEECCCCC--cceeeHHHHHHHHHHHHHCCCEEEEEeC
Confidence 357899999863211 1111123567899999999999999974
No 169
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=54.99 E-value=4 Score=34.80 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=23.6
Q ss_pred CCCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCC
Q 011355 72 PPLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTASC 120 (488)
Q Consensus 72 ~~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 120 (488)
+|..+|||+++.+. +| ..+..+.+++.+ .+++|..+.++.
T Consensus 8 ~~~~~~ri~vl~SG-------~g--snl~all~~~~~~~~~eI~~Vis~~ 48 (215)
T 3da8_A 8 PPSAPARLVVLASG-------TG--SLLRSLLDAAVGDYPARVVAVGVDR 48 (215)
T ss_dssp CCCSSEEEEEEESS-------CC--HHHHHHHHHSSTTCSEEEEEEEESS
T ss_pred CCCCCcEEEEEEeC-------Ch--HHHHHHHHHHhccCCCeEEEEEeCC
Confidence 34577899999851 22 234456665543 245777666654
No 170
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=54.68 E-value=62 Score=23.89 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=57.1
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHHh---cCEEEeCCCCCC-CCChHHHHHHH---cCCcE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYNA---IDIFVNPTLRAQ-GLDHTVLEAML---SGKPL 395 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~~---adv~v~ps~~~e-g~~~~~lEAma---~G~PV 395 (488)
..+++|+.+.+.. ..++..+-.|.... +.++....+.. .|+++.-..-++ .-|..+++.+. ..+|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVS--SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEES--SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEEC--CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 4567777765422 12222333444333 35566666654 577665322233 34566666654 36787
Q ss_pred EEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 396 MAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 396 I~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|.. ...... .+.+.. .+++..| +.+++..+|.+++..
T Consensus 83 i~~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp EEEESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHhc
Confidence 764 322211 011222 3689999 999999999998875
No 171
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=54.56 E-value=35 Score=27.17 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=32.0
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+.||+++.. +..|..+..+..+++.|.+.|++|.++....
T Consensus 4 ~~kv~IvY~-----S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~ 43 (159)
T 3fni_A 4 ETSIGVFYV-----SEYGYSDRLAQAIINGITKTGVGVDVVDLGA 43 (159)
T ss_dssp CCEEEEEEC-----TTSTTHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEEEE-----CCChHHHHHHHHHHHHHHHCCCeEEEEECcC
Confidence 457877764 2568889999999999999999999887653
No 172
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=53.87 E-value=68 Score=24.13 Aligned_cols=104 Identities=8% Similarity=0.010 Sum_probs=61.9
Q ss_pred CeEEEEEeCCCch-----hHHhhhCC--cEEEeCccCHHHHHHHHHh--------cCEEEeCCCCCCCCChHHHHHHH--
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGT--NVIVLGPLDQTRLAMFYNA--------IDIFVNPTLRAQGLDHTVLEAML-- 390 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~--~V~~~g~v~~~~l~~~~~~--------adv~v~ps~~~eg~~~~~lEAma-- 390 (488)
..+++|+.+.+.. ..+++.+. .|..... .++....+.. .|+++.-..-++.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~--~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKS--GNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDD 84 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESS--HHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECC--HHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 4566777765432 22333343 5666555 5677777754 68876633222334567777765
Q ss_pred ---cCCcEEEeCCCCcc---cceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 391 ---SGKPLMATRLASIV---GSVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 391 ---~G~PVI~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
.++|+|........ .+.+..|..+++..| +.+++.+++.....
T Consensus 85 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 85 SSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 46787764322211 134456778999999 99999998776544
No 173
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=53.84 E-value=24 Score=28.28 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=28.3
Q ss_pred CCCCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 71 NPPLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 71 ~~~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
++.|.+|||++=++ .+|.+. =..+.+.|.++||+|.=+...
T Consensus 16 ~~~~~~MkIaIgsD-------haG~~l-K~~i~~~L~~~G~eV~D~G~~ 56 (166)
T 3s5p_A 16 TQGPGSMKVAFASD-------HGGRDL-RMFLQQRASAHGYEVMDLGTE 56 (166)
T ss_dssp ---CTTCEEEEEEC-------GGGHHH-HHHHHHHHHHTTCEEEEEEC-
T ss_pred CCCCCceEEEEEEC-------chHHHH-HHHHHHHHHHCCCEEEEcCCC
Confidence 44456799998885 466654 346788899999999877654
No 174
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=53.66 E-value=67 Score=24.00 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=59.8
Q ss_pred CeEEEEEeCCCch-h----HHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCC-----CCCChHHHHHHH---cC
Q 011355 328 STVFLVAGDGPWG-A----RYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRA-----QGLDHTVLEAML---SG 392 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~----~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~-----eg~~~~~lEAma---~G 392 (488)
..+++|+.+.+.. + .+++.+-.|..... .++....+.. .|+++.-..-+ +.-|..+++.+. .+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSS--PVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECC--HHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCC--HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 3466777765422 2 22222334444333 5666666664 46665532212 233556666554 36
Q ss_pred CcEEEeCCCCcc---cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 393 KPLMATRLASIV---GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 393 ~PVI~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
+|+|........ .+.+..|..+++..| +.+++.++|..++..
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 787764221111 134456778999999 999999999999876
No 175
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=53.63 E-value=68 Score=24.07 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=46.4
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CCcEEEe-CCCCcccceeec--CCceeEeCC-CHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GKPLMAT-RLASIVGSVIVG--TDMGYLFSP-QVESVKK 426 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~PVI~~-~~~~~~~e~v~~--~~~g~l~~~-d~~~la~ 426 (488)
.++....+.. .|+++.-..-++.-|..+++.+.. .+|||.. ............ +..+++..| +.+++..
T Consensus 36 ~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~ 115 (138)
T 3c3m_A 36 GEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYE 115 (138)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHH
Confidence 4555555554 577665322233346777887753 5688753 332222111111 235899999 9999999
Q ss_pred HHHHHHhc
Q 011355 427 ALYGIWAD 434 (488)
Q Consensus 427 ~i~~ll~~ 434 (488)
.|..++..
T Consensus 116 ~i~~~~~~ 123 (138)
T 3c3m_A 116 AIEHVLAR 123 (138)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 99998875
No 176
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=53.24 E-value=1.4e+02 Score=28.66 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHHHHhcCCCCCcEEEeCCcch
Q 011355 96 ERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTESVGL 175 (488)
Q Consensus 96 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~ 175 (488)
......+++.|.+.|.+|..+................+.. + +. ..++.+.... +||+++.++..-
T Consensus 322 ~~~~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~~~~v~~--------~--D~-~~le~~i~~~----~pDllig~~~~~ 386 (458)
T 3pdi_B 322 PDLLLGFDALLRSMGAHTVAAVVPARAAALVDSPLPSVRV--------G--DL-EDLEHAARAG----QAQLVIGNSHAL 386 (458)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEESSCCSCCTTTTSSCEEE--------S--HH-HHHHHHHHHH----TCSEEEECTTHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEEECCCChhhhhCccCcEEe--------C--CH-HHHHHHHHhc----CCCEEEEChhHH
Confidence 4567789999999999998877665332222111111110 1 11 1233333333 899999998877
Q ss_pred HHhhhccCCcEE
Q 011355 176 RHTRARNLTNVV 187 (488)
Q Consensus 176 ~~~~~~~~p~~v 187 (488)
......++| .+
T Consensus 387 ~~a~k~gip-~~ 397 (458)
T 3pdi_B 387 ASARRLGVP-LL 397 (458)
T ss_dssp HHHHHTTCC-EE
T ss_pred HHHHHcCCC-EE
Confidence 666677778 54
No 177
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=53.06 E-value=13 Score=30.44 Aligned_cols=39 Identities=5% Similarity=-0.026 Sum_probs=28.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.+||++... ...|. ....++++.|.+.|++|+++.....
T Consensus 5 ~k~IllgvT------Gs~aa-~k~~~ll~~L~~~g~~V~vv~T~~A 43 (175)
T 3qjg_A 5 GENVLICLC------GSVNS-INISHYIIELKSKFDEVNVIASTNG 43 (175)
T ss_dssp CCEEEEEEC------SSGGG-GGHHHHHHHHTTTCSEEEEEECTGG
T ss_pred CCEEEEEEe------CHHHH-HHHHHHHHHHHHCCCEEEEEECcCH
Confidence 358887775 22333 3577999999999999999987653
No 178
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=52.94 E-value=82 Score=29.01 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
..|+++. .+++.|.+.|++|.++.....
T Consensus 36 atG~IG~---~l~~~L~~~g~~V~~~~r~~~ 63 (381)
T 1n7h_A 36 ITGQDGS---YLTEFLLGKGYEVHGLIRRSS 63 (381)
T ss_dssp TTSHHHH---HHHHHHHHTTCEEEEEECCCS
T ss_pred CCchHHH---HHHHHHHHCCCEEEEEecCCc
Confidence 4577665 578889999999999886543
No 179
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=52.93 E-value=17 Score=31.15 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=26.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 2 ~k~vlITG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITG------ASRGIGE---AIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEES------CSSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 67788875 5677776 6889999999998887654
No 180
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=52.86 E-value=10 Score=31.81 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEE-EEecC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELH-IFTAS 119 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~-v~~~~ 119 (488)
|.+|||++|..+ +..+|..+.+.+.+....+.|++|. ++-..
T Consensus 4 M~~mkIl~I~GS----~r~~s~t~~la~~~~~~~~~g~~v~~~idL~ 46 (199)
T 4hs4_A 4 TSPLHFVTLLGS----LRKASFNAAVARALPEIAPEGIAITPLGSIG 46 (199)
T ss_dssp -CCEEEEEEECC----CSTTCHHHHHHHHHHHHCCTTEEEEECCCGG
T ss_pred CCCCEEEEEEcC----CCCCChHHHHHHHHHHHccCCCEEEEEEehh
Confidence 356999999863 3456665544444333334588888 55443
No 181
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=52.85 E-value=9.6 Score=30.81 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=28.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..|||+++.. +..|..+..+..+++.|.+.|++|.++...
T Consensus 8 ~~~ki~I~Y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 47 (167)
T 1ykg_A 8 EMPGITIISA-----SQTGNARRVAEALRDDLLAAKLNVKLVNAG 47 (167)
T ss_dssp ----CEEEEE-----CSSSHHHHHHHHHHHHHHHHTCCCEEEEGG
T ss_pred CCCeEEEEEE-----CCchHHHHHHHHHHHHHHHCCCceEEeehh
Confidence 3357766653 256888889999999999889998887654
No 182
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=52.79 E-value=68 Score=23.77 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=27.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHH-HHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLER-HALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+++||+++|. ..-|.+. ....+-+.+.+.|.++.+-+...
T Consensus 20 ~~kkIlvvC~------sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~ 60 (113)
T 1tvm_A 20 SKRKIIVACG------GAVATSTMAAEEIKELCQSHNIPVELIQCRV 60 (113)
T ss_dssp SSEEEEEESC------SCSSHHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred cccEEEEECC------CCHHHHHHHHHHHHHHHHHcCCeEEEEEecH
Confidence 4568999986 2334444 46777788889999877666543
No 183
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=52.65 E-value=71 Score=24.00 Aligned_cols=76 Identities=8% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+.. .|+++.-. .++.-|..+++.+. .++|+|.. ...... .+.+..|..+++..| +.+++.+.|
T Consensus 37 ~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i 115 (142)
T 2qxy_A 37 EQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERV 115 (142)
T ss_dssp HHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHH
Confidence 4555555543 56665532 22222444555443 25777764 332211 123456778899999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 116 ~~~~~~ 121 (142)
T 2qxy_A 116 KKIISS 121 (142)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 999876
No 184
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=52.48 E-value=11 Score=32.84 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=26.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||+++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 1 Mk~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~~ 35 (254)
T 1zmt_A 1 MSTAIVTN------VKHFGGM---GSALRLSEAGHTVACHDESF 35 (254)
T ss_dssp -CEEEESS------TTSTTHH---HHHHHHHHTTCEEEECCGGG
T ss_pred CeEEEEeC------CCchHHH---HHHHHHHHCCCEEEEEeCCH
Confidence 67778875 5677776 58899999999988876543
No 185
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=52.46 E-value=19 Score=27.15 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=29.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC--CeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG--HELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~ 120 (488)
.||++|+..+-++ -.....++.++....++| +||.++....
T Consensus 7 ~~K~~ivi~s~d~----~~~~~~al~~A~~a~~~G~~~eV~i~~~G~ 49 (117)
T 2fb6_A 7 NDKLTILWTTDNK----DTVFNMLAMYALNSKNRGWWKHINIILWGA 49 (117)
T ss_dssp TSEEEEEECCCCH----HHHHHTHHHHHHHHHHHTSCSEEEEEECSH
T ss_pred CCeEEEEEEcCCh----HHHHHHHHHHHHHHHHcCCCCcEEEEEECC
Confidence 4899999864322 122245788888888999 7999998875
No 186
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=52.42 E-value=8.5 Score=36.20 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=25.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|||+||.. ..+|. .++..|+++|++|+|+-..
T Consensus 1 sm~V~IVGa------GpaGl-----~~A~~L~~~G~~v~v~Er~ 33 (412)
T 4hb9_A 1 SMHVGIIGA------GIGGT-----CLAHGLRKHGIKVTIYERN 33 (412)
T ss_dssp CCEEEEECC------SHHHH-----HHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECc------CHHHH-----HHHHHHHhCCCCEEEEecC
Confidence 389999974 34453 6788899999999999543
No 187
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=52.38 E-value=18 Score=27.71 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..|||+++.. |... ..+++.|.+.|++|.++...
T Consensus 3 ~~m~i~IiG~--------G~iG---~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 3 HGMYIIIAGI--------GRVG---YTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp --CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 3589988853 3333 36788899999999998754
No 188
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=52.31 E-value=65 Score=23.45 Aligned_cols=76 Identities=7% Similarity=-0.026 Sum_probs=45.2
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH--cCCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML--SGKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma--~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
.++..+.+. ..|+++.=..-++.-|..+++.+. .+.|+|........+ +.+..|..+++..| +.+++...+.
T Consensus 35 ~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 114 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVK 114 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHH
Confidence 445555554 356666532223333556666553 356777532222111 23466788999999 9999999998
Q ss_pred HHHh
Q 011355 430 GIWA 433 (488)
Q Consensus 430 ~ll~ 433 (488)
.++.
T Consensus 115 ~~l~ 118 (120)
T 3f6p_A 115 ANLR 118 (120)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8765
No 189
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=52.09 E-value=19 Score=31.38 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=30.3
Q ss_pred CceEEEEEecCCCCCCCCCcH--HHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGL--ERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~--~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++||++.|++ ..||+ .+.+.+|+.+|+++|+.|.++-.+.
T Consensus 4 ~~~~vI~v~s------~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 4 AKVRRIALAN------QKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp -CCCEEEECC------SSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEEEe------CCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4577777764 34554 4678899999999999999998765
No 190
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=52.06 E-value=65 Score=23.37 Aligned_cols=76 Identities=8% Similarity=0.024 Sum_probs=47.0
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH--cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML--SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma--~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
.++....+.. .|+++.-..-++.-|..+++.+. ...|+|.. ...... .+.+..|..+++..| +.+++...+.
T Consensus 35 ~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~ 114 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVK 114 (122)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHH
Confidence 4565555553 57766532223334566777764 35677653 333211 123456788999999 9999999998
Q ss_pred HHHh
Q 011355 430 GIWA 433 (488)
Q Consensus 430 ~ll~ 433 (488)
.++.
T Consensus 115 ~~~~ 118 (122)
T 1zgz_A 115 NLLW 118 (122)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 191
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=51.94 E-value=54 Score=26.44 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=48.1
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc---CCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS---GKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++..+.+.. .|++++=..-++.-|..+++.+.. .+|||.. ...... .+.+..|..+++..| +.+++..+|
T Consensus 40 ~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i 119 (184)
T 3rqi_A 40 KDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAAL 119 (184)
T ss_dssp HHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHT
T ss_pred HHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHH
Confidence 4455555543 466665322233446677776643 6787764 332211 134567888999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 120 ~~~~~~ 125 (184)
T 3rqi_A 120 QTNASE 125 (184)
T ss_dssp STTHHH
T ss_pred HHHHHH
Confidence 887765
No 192
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=51.91 E-value=32 Score=30.34 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=33.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++||++.|++ ....-|-...+.+|+..|++.|..|.++-.+.
T Consensus 80 ~~~kvI~vts----~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 80 SAVQSIVITS----EAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCCCEEEEEC----SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCeEEEEEC----CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5678887775 22345667788999999999999999997764
No 193
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=51.75 E-value=11 Score=33.51 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccccee---e--cCCceeEeCCC
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVI---V--GTDMGYLFSPQ 420 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v---~--~~~~g~l~~~d 420 (488)
+++.+++..+|++|--+. ++..--.+..++..|+|+|....|-.. +.. . ..+.+.++.+|
T Consensus 65 ~dl~~ll~~~DVVIDfT~-p~a~~~~~~~al~~G~~vVigTTG~s~-~~~~~L~~aa~~~~vv~a~N 129 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTL-PEGTLVHLDAALRHDVKLVIGTTGFSE-PQKAQLRAAGEKIALVFSAN 129 (272)
T ss_dssp CCHHHHHHHCSEEEECSC-HHHHHHHHHHHHHHTCEEEECCCCCCH-HHHHHHHHHTTTSEEEECSC
T ss_pred CCHHHHhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEEEECCCCCH-HHHHHHHHHhccCCEEEECC
Confidence 366677789999997664 344344566789999999997766433 211 1 12456676663
No 194
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=51.66 E-value=13 Score=32.98 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+.|||+++. . |..+. .+++.|.++||+|.+++...
T Consensus 4 m~~~ilVtG-------a-G~iG~---~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 4 MTGTLLSFG-------H-GYTAR---VLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp -CCEEEEET-------C-CHHHH---HHHHHHGGGTCEEEEEESCG
T ss_pred CcCcEEEEC-------C-cHHHH---HHHHHHHHCCCEEEEEEcCh
Confidence 347877764 3 66655 57889999999999998754
No 195
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=51.64 E-value=20 Score=33.47 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=28.7
Q ss_pred CceEEEEEecCCCCCCCCCc-HH---HHHHHHHHHH-HHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGG-LE---RHALTLHLAL-AKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG-~~---~~~~~l~~~L-~~~G~~V~v~~~~~ 120 (488)
.+|||+++.... +. .+ .....++++| .+.||+|..+....
T Consensus 2 ~k~~v~vl~gG~------s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~ 46 (377)
T 1ehi_A 2 TKKRVALIFGGN------SSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQ 46 (377)
T ss_dssp -CEEEEEEEECS------STTHHHHHHHHHHHHHHHHHHSSEEEEEEEECT
T ss_pred CCcEEEEEeCCC------CCCcceeHHHHHHHHHHhCcccCcEEEEEEEcC
Confidence 479999998521 22 11 2467889999 99999999997654
No 196
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=51.55 E-value=20 Score=30.73 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=32.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~ 121 (488)
++|||+.|++ .....|-.+.+.+|+.+|+++ |+.|.++-.+..
T Consensus 2 ~~~~vI~v~s----~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 2 NAKRVFGFVS----AKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp -CCEEEEEEE----SSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCCeEEEEEC----CCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4577766665 234456677889999999999 999999988654
No 197
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=51.26 E-value=79 Score=27.27 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 21 ~k~vlVTG------as~gIG~---aia~~l~~~G~~V~~~~r~~ 55 (253)
T 2nm0_A 21 SRSVLVTG------GNRGIGL---AIARAFADAGDKVAITYRSG 55 (253)
T ss_dssp CCEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCCh
Confidence 35667764 5677776 58899999999998887653
No 198
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=50.64 E-value=23 Score=31.51 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=29.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||++.|+. .....|-.+.+.+|+.+|+++|+.|.++-.+.
T Consensus 4 ~kvI~v~s----~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 4 TRVIVVGN----EKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp CEEEEECC----SSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEEc----CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45666654 22445666788999999999999999986654
No 199
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=50.51 E-value=79 Score=23.86 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=61.0
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCc--EEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CC
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTN--VIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GK 393 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~--V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~ 393 (488)
..+++|+.+.+.. ..+++.+.. |..... .++....+.. .|+++.-..-++.-|..+++.+.. ++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~--~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDN--GAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESS--HHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECC--HHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCC
Confidence 4566777654422 122223333 333333 5566666553 567666332234446777877765 57
Q ss_pred cEEEeCCCCccc---ceeecCCceeEeCC--CHHHHHHHHHHHHhc
Q 011355 394 PLMATRLASIVG---SVIVGTDMGYLFSP--QVESVKKALYGIWAD 434 (488)
Q Consensus 394 PVI~~~~~~~~~---e~v~~~~~g~l~~~--d~~~la~~i~~ll~~ 434 (488)
|+|........+ +.+..|..+++..| +.+++.++|..+++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 83 PIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp CEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 887643322221 23456778899888 789999999888764
No 200
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=50.50 E-value=76 Score=23.71 Aligned_cols=74 Identities=9% Similarity=0.128 Sum_probs=43.2
Q ss_pred HHHHHHHHHh---cCEEEeCCCCCCCCChHHHHHHHc---CCcEEEe--CCCCcc-cceeecCCceeEeCC-CHHHHHHH
Q 011355 358 QTRLAMFYNA---IDIFVNPTLRAQGLDHTVLEAMLS---GKPLMAT--RLASIV-GSVIVGTDMGYLFSP-QVESVKKA 427 (488)
Q Consensus 358 ~~~l~~~~~~---adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~--~~~~~~-~e~v~~~~~g~l~~~-d~~~la~~ 427 (488)
.++....+.. .|+++.-...++.-|..+++.+.. ++|+|.. ...... .+.+ ..+++..| +.+++...
T Consensus 48 ~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~~~l~KP~~~~~L~~~ 124 (138)
T 2b4a_A 48 GSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIESSEH---NLSYLQKPFAISELRAA 124 (138)
T ss_dssp HHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCCCSSS---CEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHH---HHheeeCCCCHHHHHHH
Confidence 3444444433 577665322223345677777753 5777654 322211 0111 57889999 99999999
Q ss_pred HHHHHhc
Q 011355 428 LYGIWAD 434 (488)
Q Consensus 428 i~~ll~~ 434 (488)
|..++..
T Consensus 125 i~~~~~~ 131 (138)
T 2b4a_A 125 IDYHKPS 131 (138)
T ss_dssp HHHTCCC
T ss_pred HHHHHHh
Confidence 9988765
No 201
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=50.49 E-value=27 Score=26.22 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=29.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|++++..+-|. .+-..+..+.++.++...||+|.|+-..+.
T Consensus 3 k~~~vv~~~P~---g~~~~~~al~~a~a~~a~~~~v~vff~~DG 43 (119)
T 2d1p_B 3 RIAFVFSTAPH---GTAAGREGLDALLATSALTDDLAVFFIADG 43 (119)
T ss_dssp CEEEEECSCTT---TSTHHHHHHHHHHHHHTTCSCEEEEECGGG
T ss_pred EEEEEEcCCCC---CcHHHHHHHHHHHHHHhCCCCEEEEEehHH
Confidence 58888765443 223346677899999888999999988764
No 202
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=50.30 E-value=27 Score=28.79 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=30.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 120 (488)
|||+++..+ ..|-.+..+..+++.+.+ .|++|.++....
T Consensus 2 mkilii~~S-----~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 2 AKVLVLYYS-----MYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp CEEEEEECC-----SSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CeEEEEEeC-----CCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 699999863 345666777888888888 899999987764
No 203
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=50.21 E-value=6.2 Score=32.99 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEE-EEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELH-IFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~-v~~~~ 119 (488)
++|||++|..+ +..++....+.+.+..+.+.|++|. ++...
T Consensus 3 ~~mkil~I~GS----~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~ 44 (193)
T 3svl_A 3 EKLQVVTLLGS----LRKGSFNGMVARTLPKIAPASMEVNALPSIA 44 (193)
T ss_dssp -CEEEEEEECC----CSTTCHHHHHHHHGGGTSCTTEEEEECCCST
T ss_pred CCCEEEEEEcc----CCCCCHHHHHHHHHHHHccCCCEEEEEEeHH
Confidence 46999999873 3456665544333333334578888 55544
No 204
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=50.17 E-value=1e+02 Score=27.30 Aligned_cols=39 Identities=13% Similarity=-0.040 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLN 122 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~ 122 (488)
++|||+++.+. .| .-+..|..+.+.. ..+|.++.++..+
T Consensus 87 ~~~ri~vl~Sg-------~g--~nl~~ll~~~~~g~l~~~i~~Visn~~~ 127 (287)
T 3nrb_A 87 DRKKVVIMVSK-------FD--HCLGDLLYRHRLGELDMEVVGIISNHPR 127 (287)
T ss_dssp CCCEEEEEECS-------CC--HHHHHHHHHHHHTSSCCEEEEEEESSCG
T ss_pred CCcEEEEEEeC-------CC--cCHHHHHHHHHCCCCCeEEEEEEeCChH
Confidence 57899999851 23 2344666666543 3576666655433
No 205
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=49.94 E-value=20 Score=32.12 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=25.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++.. ..|+.++ .+++.|.++||+|.++....
T Consensus 1 m~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 34 (312)
T 3ko8_A 1 MRIVVTG-------GAGFIGS---HLVDKLVELGYEVVVVDNLS 34 (312)
T ss_dssp CEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEECCCS
T ss_pred CEEEEEC-------CCChHHH---HHHHHHHhCCCEEEEEeCCC
Confidence 6776664 3566666 57889999999999987654
No 206
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=49.90 E-value=83 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
-|.++|+. ..+|+.+ .+++.|.++|++|.++....
T Consensus 14 ~k~vlVTG------as~GIG~---aia~~l~~~G~~V~~~~r~~ 48 (269)
T 3vtz_A 14 DKVAIVTG------GSSGIGL---AVVDALVRYGAKVVSVSLDE 48 (269)
T ss_dssp TCEEEESS------TTSHHHH---HHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCCc
Confidence 46677774 5678776 68899999999999887654
No 207
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=49.55 E-value=33 Score=29.90 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=30.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
||++.|++ .....|-.+.+.+|+.+|+++|+.|.++-.+..
T Consensus 18 ~~vI~v~s----~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 18 KSRIAVMS----GKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp SCEEEEEC----SSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEc----CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45555554 223445567889999999999999999987654
No 208
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=49.52 E-value=19 Score=31.85 Aligned_cols=36 Identities=31% Similarity=0.308 Sum_probs=26.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
..|||+++. . |+.++ .+++.|.++||+|.+++....
T Consensus 2 ~~~~ilVtG-------a-G~iG~---~l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 2 SLSKILIAG-------C-GDLGL---ELARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp CCCCEEEEC-------C-SHHHH---HHHHHHHHTTCCEEEEECTTS
T ss_pred CCCcEEEEC-------C-CHHHH---HHHHHHHHCCCEEEEEeCCcc
Confidence 346777663 2 66655 578889999999999987653
No 209
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=49.50 E-value=10 Score=34.93 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=28.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+|||+++...... ...-.-.....++++|.+.||+|.++....
T Consensus 2 ~~~~v~vl~gG~s~--E~~vs~~s~~~v~~al~~~g~~v~~i~~~~ 45 (343)
T 1e4e_A 2 NRIKVAILFGGCSE--EHDVSVKSAIEIAANINKEKYEPLYIGITK 45 (343)
T ss_dssp CCEEEEEEEECSST--THHHHHHHHHHHHHHSCTTTEEEEEEEECT
T ss_pred CCcEEEEEeCCCCC--CcchhHHHHHHHHHHhhhcCCEEEEEEEcC
Confidence 57899999852110 000001145678999999999999987654
No 210
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=49.38 E-value=17 Score=27.69 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=46.1
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH-cCCcEEEe-CCCCcccceeecCCceeEeCC-CHHHHHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML-SGKPLMAT-RLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIW 432 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma-~G~PVI~~-~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll 432 (488)
-++-.+.+.. .|++++=-.-+..-|..+++.+. .++|||.. ..+... .....+..+++..| +.++|.++|.+++
T Consensus 42 g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~~~~~-~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGYGSKG-LDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTTCTTS-CCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecCccHH-HHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 4455555553 46766522223444677777664 57888753 333221 23345677899999 9999999987764
Q ss_pred h
Q 011355 433 A 433 (488)
Q Consensus 433 ~ 433 (488)
+
T Consensus 121 ~ 121 (123)
T 2lpm_A 121 K 121 (123)
T ss_dssp S
T ss_pred h
Confidence 3
No 211
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=49.35 E-value=13 Score=33.76 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=26.9
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|||+++.. | ....+++++.+.|++|.++....
T Consensus 2 ~m~Ililg~---------g---~~~~l~~a~~~~G~~v~~~~~~~ 34 (334)
T 2r85_A 2 KVRIATYAS---------H---SALQILKGAKDEGFETIAFGSSK 34 (334)
T ss_dssp CSEEEEESS---------T---THHHHHHHHHHTTCCEEEESCGG
T ss_pred ceEEEEECC---------h---hHHHHHHHHHhCCCEEEEEECCC
Confidence 589999974 1 44578999999999999998764
No 212
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=49.16 E-value=29 Score=31.55 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=30.2
Q ss_pred ceE-EEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLK-IALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mk-Il~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|| |++++. ....|=.+.+.+++.+|++.|+.|.++..+.
T Consensus 12 gm~~i~v~sg-----KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 12 GKTTFVFIGG-----KGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp TBCEEEEEEE-----STTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEEeC-----CCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 444 555543 3445666788999999999999999999876
No 213
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=49.13 E-value=26 Score=30.66 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=31.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++||++.|.+ .....|-.+.+.+|+.+|+ +|+.|.++-.+.
T Consensus 25 ~~~~vI~v~s----~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 25 KKPKIITIAS----IKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp -CCEEEEECC----SSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CCCeEEEEEe----CCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 5678777765 2344566678899999999 999999998775
No 214
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=49.09 E-value=18 Score=33.06 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
..|||+++. ..|+.+. .+++.|.++|+++.|+..
T Consensus 23 ~~~~vlVtG-------atG~iG~---~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 23 NAMNILVTG-------GAGFIGS---NFVHYMLQSYETYKIINF 56 (346)
T ss_dssp -CEEEEEET-------TTSHHHH---HHHHHHHHHCTTEEEEEE
T ss_pred CCCeEEEEC-------CccHHHH---HHHHHHHhhCCCcEEEEE
Confidence 456776664 3466665 678889999955555544
No 215
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=49.02 E-value=16 Score=31.38 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=27.1
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEecCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG-HELHIFTASCL 121 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~ 121 (488)
.||.++|+. ..||..+ .+++.|.+.| ++|.++.....
T Consensus 22 ~mk~vlVtG------atG~iG~---~l~~~L~~~G~~~V~~~~R~~~ 59 (236)
T 3qvo_A 22 HMKNVLILG------AGGQIAR---HVINQLADKQTIKQTLFARQPA 59 (236)
T ss_dssp CCEEEEEET------TTSHHHH---HHHHHHTTCTTEEEEEEESSGG
T ss_pred cccEEEEEe------CCcHHHH---HHHHHHHhCCCceEEEEEcChh
Confidence 456556653 5677776 5788999999 89999887653
No 216
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=49.01 E-value=34 Score=31.79 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=25.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+|++.. ..|+... .+++.|.++||+|.++....
T Consensus 29 ~~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 63 (379)
T 2c5a_A 29 NLKISITG-------AGGFIAS---HIARRLKHEGHYVIASDWKK 63 (379)
T ss_dssp CCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEESSC
T ss_pred CCeEEEEC-------CccHHHH---HHHHHHHHCCCeEEEEECCC
Confidence 35666554 4566665 57888889999999988754
No 217
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=48.92 E-value=40 Score=28.56 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~ 120 (488)
+++||+++.+. +| ..+..+.+++.+. +++|..+.++.
T Consensus 7 ~~~ri~vl~SG-------~g--snl~all~~~~~~~~~~~I~~Vis~~ 45 (215)
T 3kcq_A 7 KELRVGVLISG-------RG--SNLEALAKAFSTEESSVVISCVISNN 45 (215)
T ss_dssp CCEEEEEEESS-------CC--HHHHHHHHHTCCC-CSEEEEEEEESC
T ss_pred CCCEEEEEEEC-------Cc--HHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence 46799998751 22 3445677777554 36777666543
No 218
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=48.88 E-value=84 Score=27.44 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=27.2
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|+++|+. ..+|..+ .+++.|.++|++|.++.....
T Consensus 7 k~~lVTG------as~GIG~---aia~~la~~G~~V~~~~r~~~ 41 (274)
T 3e03_A 7 KTLFITG------ASRGIGL---AIALRAARDGANVAIAAKSAV 41 (274)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESCCS
T ss_pred cEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEeccch
Confidence 6677774 5678776 688999999999988876653
No 219
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=48.68 E-value=89 Score=23.92 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=60.0
Q ss_pred CeEEEEEeCCCch-----hHHhhhCC-cEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH-----cCCc
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGT-NVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML-----SGKP 394 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~-~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma-----~G~P 394 (488)
+++++||-+.+.. ..+++.+- .|..... -++..+.+.. .|++++=-.-++--|..+++.+- ..+|
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~--g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ip 89 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADD--GLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLP 89 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS--HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECC--HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCe
Confidence 4566666654422 22223332 2433332 3444444443 56666522223444778888774 4578
Q ss_pred EEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 395 LMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 395 VI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
||.-...+..+ +....|-.+|+..| +.++|.+.|.++++
T Consensus 90 vI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 90 VLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 87643222221 23456888999999 99999999998864
No 220
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=48.63 E-value=75 Score=23.06 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=46.2
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHHc-----CCcEEEeCCCCcc---cceeecCCceeEeCC-CHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAMLS-----GKPLMATRLASIV---GSVIVGTDMGYLFSP-QVESVKK 426 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma~-----G~PVI~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~ 426 (488)
.++....+. ..|++++-..-++.-|..+++.+.. .+|+|........ .+....|..+++..| +.+++.+
T Consensus 34 ~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 113 (124)
T 1mb3_A 34 GLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLE 113 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 445444443 3577665322223335677777653 5788764322211 133456778999999 9999999
Q ss_pred HHHHHHhc
Q 011355 427 ALYGIWAD 434 (488)
Q Consensus 427 ~i~~ll~~ 434 (488)
++..++..
T Consensus 114 ~i~~~~~~ 121 (124)
T 1mb3_A 114 TIKRLLER 121 (124)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHhc
Confidence 99988754
No 221
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=48.47 E-value=17 Score=31.49 Aligned_cols=33 Identities=9% Similarity=0.265 Sum_probs=25.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 3 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 35 (247)
T 3dii_A 3 RGVIVTG------GGHGIGK---QICLDFLEAGDKVCFIDID 35 (247)
T ss_dssp CEEEEES------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5666764 5677776 6889999999999988654
No 222
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=48.46 E-value=28 Score=31.03 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=27.5
Q ss_pred ceEEEEEecCCCCCCCCCcHHH---HHHHHHHHHHHCCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLER---HALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~---~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+|||+++.... ....+. ....++++|.+.||+|.++...
T Consensus 2 ~~~i~il~gg~-----s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGT-----SAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCS-----STTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCC-----CccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 58999998521 111122 3457999999999999998765
No 223
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=48.33 E-value=1.2e+02 Score=26.82 Aligned_cols=102 Identities=13% Similarity=0.019 Sum_probs=46.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCC-CCCCC--CCCCCceEEEecCCCCccCcchhH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASC-LNCSF--PTYPISSLYFHLSKPTAAGYLDQS 149 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~-~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~ 149 (488)
+++||+++.+. +|. -+..|..+..+. ..+|.++.++. .+... ...+++...+..... ......
T Consensus 88 ~~~ri~vl~Sg-------~g~--nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~gIp~~~~~~~~~---~r~~~~ 155 (288)
T 3obi_A 88 TRRKVMLLVSQ-------SDH--CLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKD---TRRQQE 155 (288)
T ss_dssp SCEEEEEEECS-------CCH--HHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTTCCEEECCCCTT---THHHHH
T ss_pred CCcEEEEEEcC-------CCC--CHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcCCCEEEeCCCcc---cHHHHH
Confidence 57899999851 232 344566665543 24666555544 22211 123444443322111 111111
Q ss_pred HHHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
..+....... ++|+|++..+. ++..+....+.-+.-+|.
T Consensus 156 ~~~~~~l~~~----~~Dlivlagy~~il~~~~l~~~~~~~iNiHp 196 (288)
T 3obi_A 156 AAITALIAQT----HTDLVVLARYMQILSDEMSARLAGRCINIHH 196 (288)
T ss_dssp HHHHHHHHHH----TCCEEEESSCCSCCCHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHhc----CCCEEEhhhhhhhCCHHHHhhhcCCeEEeCc
Confidence 2222222222 89999997653 222222222324566664
No 224
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=48.22 E-value=21 Score=30.56 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=26.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||+++|+. ..||.++ .+++.|.++|++|.++...
T Consensus 3 ~k~vlVTG------as~GIG~---a~a~~l~~~G~~V~~~~r~ 36 (235)
T 3l6e_A 3 LGHIIVTG------AGSGLGR---ALTIGLVERGHQVSMMGRR 36 (235)
T ss_dssp CCEEEEES------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEECC
Confidence 56777774 5678776 6889999999999888764
No 225
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=47.83 E-value=39 Score=29.14 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=30.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+.|++ .....|-.+.+.+|+.+|+++|+.|.++-.+.
T Consensus 2 ~~vi~v~s----~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTS----GKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEEC----SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEEC----CCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 46666654 23445667889999999999999999998765
No 226
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=47.72 E-value=21 Score=27.85 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=28.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFT 117 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 117 (488)
|||+++-. +..|..+..+..+++.|.+.|++|.++.
T Consensus 2 ~ki~I~Y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 2 ADITLISG-----STLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CSEEEECC-----TTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEE-----CCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 46666643 3668889999999999999999998774
No 227
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=47.70 E-value=29 Score=29.24 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~ 121 (488)
|||+++.++ +|. .+..|++++++. +++|..+.+.+.
T Consensus 1 ~riaVl~SG-------~Gs--~L~aLi~~~~~~~~~~~I~~Vvs~~~ 38 (209)
T 1meo_A 1 ARVAVLISG-------TGS--NLQALIDSTREPNSSAQIDIVISNKA 38 (209)
T ss_dssp CEEEEEESS-------SCT--THHHHHHHHHSTTCSCEEEEEEESST
T ss_pred CeEEEEEEC-------Cch--HHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 589998851 222 334566665544 688877766553
No 228
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=47.57 E-value=25 Score=27.21 Aligned_cols=35 Identities=20% Similarity=0.028 Sum_probs=25.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+.+|+++.. | +.-..+++.|.+.|++|.++....
T Consensus 6 ~~~~viIiG~--------G---~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 6 ICNHALLVGY--------G---RVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CCSCEEEECC--------S---HHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCCEEEECc--------C---HHHHHHHHHHHHCCCCEEEEECCH
Confidence 3457777753 2 233478899999999999998764
No 229
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=47.45 E-value=31 Score=30.11 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=32.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
++||.++|+. .....|=......|+++|+++|+.|..+=+
T Consensus 24 ~~m~~i~Itg----t~t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 24 SHMTILVVTG----TGTGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp SSCEEEEEEE----SSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEEEe----CCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 5689888886 335667777888999999999999998743
No 230
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=47.30 E-value=9.4 Score=35.54 Aligned_cols=45 Identities=11% Similarity=-0.029 Sum_probs=28.4
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.+|||+++....-. ...-.-.....++++|.+.||+|..+....
T Consensus 1 m~~~~v~vl~gg~s~--E~~vs~~s~~~v~~al~~~g~~v~~i~~~~ 45 (364)
T 2i87_A 1 MTKENICIVFGGKSA--EHEVSILTAQNVLNAIDKDKYHVDIIYITN 45 (364)
T ss_dssp --CEEEEEEEECSSS--CHHHHHHHHHHHHHTSCTTTEEEEEEEECT
T ss_pred CCCcEEEEEECCCCc--cchhHHHHHHHHHHHHhhcCCEEEEEEEcC
Confidence 357999999853211 000001244678899999999999997654
No 231
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=47.18 E-value=73 Score=28.86 Aligned_cols=106 Identities=8% Similarity=-0.030 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccceee----c--CCceeEeCC-CHHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIV----G--TDMGYLFSP-QVESVKKALYG 430 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~----~--~~~g~l~~~-d~~~la~~i~~ 430 (488)
..++ .-++.||++|.-...-|+|--.++++.. +.++|.... ++...-.. + ..--++.+| +...+++.|.+
T Consensus 86 p~d~-~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~-gi~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~ 162 (321)
T 1xvl_A 86 PSDI-VKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTE-GIEPIPIADGPYTDKPNPHAWMSPRNALVYVENIRQ 162 (321)
T ss_dssp HHHH-HHHHTCSEEEECCTTSSTTHHHHHHTSS-SCCEEETTT-TCCCCBCCSSSSTTSBCCCGGGSHHHHHHHHHHHHH
T ss_pred HHHH-HHHhcCCEEEECCCChHHHHHHHHHhcC-CCcEEEccC-CcccccccccCCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 3444 6688999999865434777667777665 666665432 22200000 0 123356666 77777777766
Q ss_pred HHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 011355 431 IWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLC 469 (488)
Q Consensus 431 ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 469 (488)
.+. -+|+......+|+.++..+ ++..-+.+.+.+..
T Consensus 163 ~L~~~DP~~a~~Y~~Na~~~~~~---L~~Ld~~~~~~l~~ 199 (321)
T 1xvl_A 163 AFVELDPDNAKYYNANAAVYSEQ---LKAIDRQLGADLEQ 199 (321)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHH---HHHHHHHHHHHHTT
T ss_pred HHHHHCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 654 2366666677777766644 45555555554443
No 232
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=47.16 E-value=25 Score=32.56 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=30.6
Q ss_pred eEEEEEecCCCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLE--RHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||+.|.+ ..||++ +.+.+|+..|++.|..|.++-.+..
T Consensus 1 MkvIav~s------~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 1 MRTISFFN------NKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp CEEEEBCC------SSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeEEEEEc------CCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 78777775 345554 6788999999999999999987753
No 233
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=47.14 E-value=88 Score=23.47 Aligned_cols=77 Identities=9% Similarity=0.024 Sum_probs=48.3
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc---CCcEEE-eCCCCcccceeecCCceeEeCC-CHHHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS---GKPLMA-TRLASIVGSVIVGTDMGYLFSP-QVESVKKALYG 430 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~---G~PVI~-~~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ 430 (488)
.++....+.. .|+++.-..-++.-|..+++.+.. ..|||. +.......+.+..|..+++..| +.+++.+.|..
T Consensus 44 ~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~ 123 (143)
T 2qv0_A 44 GLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQK 123 (143)
T ss_dssp HHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHH
Confidence 4555555553 577766332233346677777654 345543 4333222244567788999999 99999999999
Q ss_pred HHhc
Q 011355 431 IWAD 434 (488)
Q Consensus 431 ll~~ 434 (488)
++..
T Consensus 124 ~~~~ 127 (143)
T 2qv0_A 124 LTTA 127 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 234
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=47.12 E-value=24 Score=30.35 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=27.0
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 6 ~~k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~~ 41 (241)
T 1dhr_A 6 EARRVLVYG------GRGALGS---RCVQAFRARNWWVASIDVVE 41 (241)
T ss_dssp CCCEEEEET------TTSHHHH---HHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEEC------CCcHHHH---HHHHHHHhCCCEEEEEeCCh
Confidence 345666764 5677776 68899999999999887654
No 235
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=47.07 E-value=1.2e+02 Score=26.15 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=25.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 9 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~~ 42 (264)
T 2dtx_A 9 KVVIVTG------ASMGIGR---AIAERFVDEGSKVIDLSIHD 42 (264)
T ss_dssp CEEEEES------CSSHHHH---HHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEecCc
Confidence 5566664 5678776 68899999999999887654
No 236
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=46.88 E-value=22 Score=30.04 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=25.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++.. +..-..+++.|.+.|++|.++....
T Consensus 1 M~iiIiG~-----------G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGG-----------ETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECC-----------HHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECC-----------CHHHHHHHHHHHhCCCeEEEEECCH
Confidence 67777753 3455689999999999999998654
No 237
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=46.79 E-value=89 Score=23.41 Aligned_cols=103 Identities=11% Similarity=0.072 Sum_probs=57.9
Q ss_pred EEEEEeCCCch-hHHhh----hCCcEEEeCccCHHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-
Q 011355 330 VFLVAGDGPWG-ARYRD----LGTNVIVLGPLDQTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT- 398 (488)
Q Consensus 330 ~l~ivG~g~~~-~~~~~----l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~- 398 (488)
+++|+.+.+.. +.++. .+-.|..... .++....+. ..|+++.-..-+..-|..+++.+. ..+|+|..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls 83 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVET--GRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIAT 83 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESS--HHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCC--HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 56667665433 22222 2223333332 455555554 368877633222333566666664 35677654
Q ss_pred CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 399 RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 399 ~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
...... .+.+..|..+++..| +.+++...|..++..
T Consensus 84 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 84 AHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp SSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 332211 133456788999999 999999999887754
No 238
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=46.65 E-value=18 Score=30.01 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=32.0
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|||+|+-. ...|..+..+..+++.|.+.|++|.++....
T Consensus 21 ~~kv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~ 60 (191)
T 1bvy_F 21 NTPLLVLYG-----SNMGTAEGTARDLADIAMSKGFAPQVATLDS 60 (191)
T ss_dssp CCCEEEEEE-----CSSSHHHHHHHHHHHHHHTTTCCCEEEEGGG
T ss_pred CCeEEEEEE-----CCChHHHHHHHHHHHHHHhCCCceEEeeHHH
Confidence 467776653 3678899999999999998999999887664
No 239
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=46.57 E-value=25 Score=31.90 Aligned_cols=36 Identities=17% Similarity=0.029 Sum_probs=25.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|||++.. ..|+.+. .+++.|.++|++|.++....
T Consensus 13 ~~~~vlVTG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 48 (335)
T 1rpn_A 13 MTRSALVTG-------ITGQDGA---YLAKLLLEKGYRVHGLVARR 48 (335)
T ss_dssp --CEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEECCC
T ss_pred cCCeEEEEC-------CCChHHH---HHHHHHHHCCCeEEEEeCCC
Confidence 456776664 4577666 57888989999999988754
No 240
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=46.52 E-value=33 Score=28.43 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=28.2
Q ss_pred eEEEEEecCCCCCCCCCc-HHHHHHHHHHH-HHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGG-LERHALTLHLA-LAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG-~~~~~~~l~~~-L~~~G~~V~v~~~~~ 120 (488)
|||+++..+ ...+| ....+..+++. |.+.|++|.++....
T Consensus 3 mkilii~gS----~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~ 44 (197)
T 2vzf_A 3 YSIVAISGS----PSRNSTTAKLAEYALAHVLARSDSQGRHIHVID 44 (197)
T ss_dssp EEEEEEECC----SSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGG
T ss_pred ceEEEEECC----CCCCChHHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 799999862 23345 44556666777 888899999987653
No 241
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=46.41 E-value=35 Score=27.94 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 120 (488)
.|||+++..+ ..|..+..+..+++.|.+ .|++|.++....
T Consensus 4 M~kiliiy~S-----~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~ 44 (188)
T 2ark_A 4 MGKVLVIYDT-----RTGNTKKMAELVAEGARSLEGTEVRLKHVDE 44 (188)
T ss_dssp CEEEEEEECC-----SSSHHHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred CCEEEEEEEC-----CCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh
Confidence 3689999752 446677788888899988 899999887653
No 242
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=46.35 E-value=20 Score=32.75 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=25.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+.|+|++.. ..|+.+. .+++.|.++||+|.++....
T Consensus 18 ~~~~vlVtG-------atG~iG~---~l~~~L~~~G~~V~~~~r~~ 53 (347)
T 4id9_A 18 GSHMILVTG-------SAGRVGR---AVVAALRTQGRTVRGFDLRP 53 (347)
T ss_dssp ---CEEEET-------TTSHHHH---HHHHHHHHTTCCEEEEESSC
T ss_pred CCCEEEEEC-------CCChHHH---HHHHHHHhCCCEEEEEeCCC
Confidence 446666664 4566666 57889999999999997764
No 243
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=46.31 E-value=23 Score=28.37 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=26.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+|||++-++ .+|.+.- ..+.+.|.+.||+|.=+...
T Consensus 2 ~~MkIaigsD-------haG~~lK-~~i~~~L~~~G~eV~D~G~~ 38 (162)
T 2vvp_A 2 SGMRVYLGAD-------HAGYELK-QRIIEHLKQTGHEPIDCGAL 38 (162)
T ss_dssp -CCEEEEEEC-------HHHHHHH-HHHHHHHHHTTCEEEECSCC
T ss_pred CCCEEEEEeC-------chhHHHH-HHHHHHHHHCCCEEEEeCCC
Confidence 3489988875 3565533 35788999999998877543
No 244
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=46.24 E-value=1.5e+02 Score=26.01 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=60.2
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEE-EeCccCHHHHHHHHHh--cCEEEe----C-CCCCCCCC-hHHHHHHHcCC
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVI-VLGPLDQTRLAMFYNA--IDIFVN----P-TLRAQGLD-HTVLEAMLSGK 393 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~-~~g~v~~~~l~~~~~~--adv~v~----p-s~~~eg~~-~~~lEAma~G~ 393 (488)
..+++++-+.+.. ..++..+-.|. .... .++..+.+.. .|++++ | .. .|+- ...+-... .+
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~--g~eAl~~~~~~~~dlvl~D~~MPd~m--dG~e~~~~ir~~~-~~ 234 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAAT--RGEALEAVTRRTPGLVLADIQLADGS--SGIDAVKDILGRM-DV 234 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESS--HHHHHHHHHHCCCSEEEEESCCTTSC--CTTTTTHHHHHHT-TC
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCC--HHHHHHHHHhCCCCEEEEcCCCCCCC--CHHHHHHHHHhcC-CC
Confidence 4567777765432 22333444444 3333 5566666664 577766 4 22 2322 12222333 89
Q ss_pred cEEEe-CCCCcccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 394 PLMAT-RLASIVGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 394 PVI~~-~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|||.. ..+....+.+..|..+++..| +.++|...|..++..
T Consensus 235 piI~lT~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 235 PVIFITAFPERLLTGERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp CEEEEESCGGGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 99874 322222234566788899999 999999999999875
No 245
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=45.59 E-value=46 Score=28.21 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=29.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||++.|++ .....|-.+.+.+|+.+|+++|+.|.++-.+.
T Consensus 2 ~~~i~v~s----~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 2 GRIISIVS----GKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEEC----SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred ceEEEEec----CCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 35555554 22445667789999999999999999997764
No 246
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=45.31 E-value=25 Score=30.93 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=27.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.++|+++|+. ..||..+ .+++.|.++|++|.+....
T Consensus 24 ~~~k~vlITG------as~gIG~---a~a~~l~~~G~~V~~~~~~ 59 (272)
T 4e3z_A 24 SDTPVVLVTG------GSRGIGA---AVCRLAARQGWRVGVNYAA 59 (272)
T ss_dssp CCSCEEEETT------TTSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEEC------CCchHHH---HHHHHHHHCCCEEEEEcCC
Confidence 4467888875 5677776 6889999999999877443
No 247
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=45.28 E-value=29 Score=29.18 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=25.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHH-HCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALA-KRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~-~~G~~V~v~~~~~ 120 (488)
||.++|+. ..||..+ .+++.|. +.|++|.++....
T Consensus 5 mk~vlVtG------asg~iG~---~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 5 YXYITILG------AAGQIAQ---XLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CSEEEEES------TTSHHHH---HHHHHHHHHCCCEEEEEESSH
T ss_pred EEEEEEEe------CCcHHHH---HHHHHHHhcCCceEEEEecCc
Confidence 67445553 4577776 5788888 8999999988764
No 248
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=45.14 E-value=35 Score=24.92 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=24.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG-HELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~ 120 (488)
.|||+++. . |+... .+++.|.+.| ++|.++....
T Consensus 5 ~~~v~I~G-------~-G~iG~---~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVG-------A-GKIGQ---MIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEEC-------C-SHHHH---HHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEEC-------C-CHHHH---HHHHHHHhCCCceEEEEeCCH
Confidence 46777774 3 66655 5778888899 9988887643
No 249
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=45.14 E-value=84 Score=22.63 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=46.6
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc---CCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS---GKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+.. .|+++.-..-+..-|..+++.+.. .+|+|.. ...... .+.+..|-.+++..| +.+++...+
T Consensus 33 ~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 112 (121)
T 2pl1_A 33 AKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 (121)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHH
Confidence 4455555543 577665322223345677777653 5677654 333211 134456778999999 999999999
Q ss_pred HHHHh
Q 011355 429 YGIWA 433 (488)
Q Consensus 429 ~~ll~ 433 (488)
..++.
T Consensus 113 ~~~~~ 117 (121)
T 2pl1_A 113 QALMR 117 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 250
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=44.91 E-value=58 Score=27.10 Aligned_cols=76 Identities=8% Similarity=-0.049 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYG 430 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ 430 (488)
.++....+...|+++.-..-++.-|..+++.+. ..+|||.. ...... .+.+..|..|++..| +.+++.++|..
T Consensus 34 ~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~ 113 (220)
T 1p2f_A 34 GEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKR 113 (220)
T ss_dssp HHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 344433335678877632223333566666654 46788764 322211 134456788999999 99999999998
Q ss_pred HHh
Q 011355 431 IWA 433 (488)
Q Consensus 431 ll~ 433 (488)
++.
T Consensus 114 ~~~ 116 (220)
T 1p2f_A 114 FLE 116 (220)
T ss_dssp HHH
T ss_pred HHc
Confidence 875
No 251
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=44.67 E-value=27 Score=31.73 Aligned_cols=35 Identities=14% Similarity=-0.057 Sum_probs=25.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+|++.. ..|+.+. .+++.|.++||+|.++....
T Consensus 3 ~~~vlVtG-------atG~iG~---~l~~~L~~~G~~V~~~~r~~ 37 (345)
T 2z1m_A 3 GKRALITG-------IRGQDGA---YLAKLLLEKGYEVYGADRRS 37 (345)
T ss_dssp CCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEECSCC
T ss_pred CCEEEEEC-------CCChHHH---HHHHHHHHCCCEEEEEECCC
Confidence 35666554 4577766 57888999999999987654
No 252
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=44.60 E-value=90 Score=22.84 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=59.1
Q ss_pred CeEEEEEeCCCch-h----HHhhhCC-cEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CCc
Q 011355 328 STVFLVAGDGPWG-A----RYRDLGT-NVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GKP 394 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~----~~~~l~~-~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~P 394 (488)
..+++++.+.+.. . .++..+- .|..... .++....+.. .|+++.-..-++.-|..+++.+.. .+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~--~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGD--GEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSS--HHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCC--HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 3456777765422 1 2222222 3333332 5566666653 577766332233346677777743 567
Q ss_pred EEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 395 LMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 395 VI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
+|.....+..+ +.+..|..+++..| +.+++..+|..++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 77643222111 33456778999999 99999999988765
No 253
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=44.38 E-value=32 Score=31.17 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=25.8
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+|++.. ..||.++ .+++.|.++|++|.++....
T Consensus 5 ~~~vlVTG-------atG~iG~---~l~~~L~~~G~~V~~~~r~~ 39 (341)
T 3enk_A 5 KGTILVTG-------GAGYIGS---HTAVELLAHGYDVVIADNLV 39 (341)
T ss_dssp SCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEECCCS
T ss_pred CcEEEEec-------CCcHHHH---HHHHHHHHCCCcEEEEecCC
Confidence 45665554 4577776 57889999999999887654
No 254
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=44.34 E-value=21 Score=31.23 Aligned_cols=37 Identities=30% Similarity=0.259 Sum_probs=28.0
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+||.++|+. ..||..+ .+++.|.++|++|.++.....
T Consensus 2 ~~k~vlVTG------asg~IG~---~la~~L~~~G~~V~~~~r~~~ 38 (267)
T 3rft_A 2 AMKRLLVTG------AAGQLGR---VMRERLAPMAEILRLADLSPL 38 (267)
T ss_dssp CEEEEEEES------TTSHHHH---HHHHHTGGGEEEEEEEESSCC
T ss_pred CCCEEEEEC------CCCHHHH---HHHHHHHhcCCEEEEEecCCc
Confidence 367677774 5688776 578899999999998877653
No 255
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=44.13 E-value=89 Score=22.63 Aligned_cols=76 Identities=7% Similarity=-0.068 Sum_probs=48.1
Q ss_pred HHHHHHHHH--hcCEEEeCCCCC-CCCChHHHHHHH-----cCCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRA-QGLDHTVLEAML-----SGKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVK 425 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~-eg~~~~~lEAma-----~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la 425 (488)
.++....+. ..|+++.-..-+ ..-|..+++.+. ..+|+|.. .....+ +....|..+++..| +.+++.
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~ 116 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLV 116 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHH
Confidence 445555544 357766532222 333566777764 46888877 332221 23456778899999 999999
Q ss_pred HHHHHHHhc
Q 011355 426 KALYGIWAD 434 (488)
Q Consensus 426 ~~i~~ll~~ 434 (488)
+.+..++..
T Consensus 117 ~~i~~~~~~ 125 (127)
T 2gkg_A 117 ERAGALIGF 125 (127)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHcC
Confidence 999988764
No 256
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=44.03 E-value=26 Score=30.52 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=28.0
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.||.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 6 ~~k~vlVTG------as~gIG~---~~a~~l~~~G~~v~~~~~~~ 41 (264)
T 3i4f_A 6 FVRHALITA------GTKGLGK---QVTEKLLAKGYSVTVTYHSD 41 (264)
T ss_dssp CCCEEEETT------TTSHHHH---HHHHHHHHTTCEEEEEESSC
T ss_pred ccCEEEEeC------CCchhHH---HHHHHHHHCCCEEEEEcCCC
Confidence 468888875 5677776 68999999999999886543
No 257
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=44.01 E-value=33 Score=29.68 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|.++|+. ..||..+ .+++.|.++|++|.++.....
T Consensus 23 k~vlITG------as~gIG~---~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 23 KNILVLG------GSGALGA---EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEeCCcc
Confidence 6677774 5677776 688999999999988876643
No 258
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=43.90 E-value=30 Score=33.92 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=27.6
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.|||+++. ..|+.+. .+++.|.+.||+|.+++....
T Consensus 147 ~m~VLVTG-------atG~IG~---~l~~~L~~~G~~V~~l~R~~~ 182 (516)
T 3oh8_A 147 PLTVAITG-------SRGLVGR---ALTAQLQTGGHEVIQLVRKEP 182 (516)
T ss_dssp CCEEEEES-------TTSHHHH---HHHHHHHHTTCEEEEEESSSC
T ss_pred CCEEEEEC-------CCCHHHH---HHHHHHHHCCCEEEEEECCCC
Confidence 68887775 3466665 578889999999999987654
No 259
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=43.90 E-value=35 Score=31.75 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.++||++.|.+ .....|-.+.+.+|+.+|+++|..|.++-.+
T Consensus 140 ~~~~kvIav~s----~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTS----PCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEEC----SSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCceEEEEEC----CCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 35678777765 2344566778899999999999999999876
No 260
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=43.76 E-value=42 Score=27.16 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=31.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
++|+++.++. ....|=.+.+..|+..|.++|+.|.++.....
T Consensus 2 ~~~~~i~i~G-----~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 2 NAMNVWQVVG-----YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp --CCEEEEEC-----CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCCEEEEEEC-----CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 3577777774 14567788889999999999999999987653
No 261
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=43.73 E-value=75 Score=27.61 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=26.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
|||+..+. |=...-+..|+++|.+.| +|+|+++..+...
T Consensus 3 ~ILlTNDD-------Gi~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg 41 (251)
T 2wqk_A 3 TFLLVNDD-------GYFSPGINALREALKSLG-RVVVVAPDRNLSG 41 (251)
T ss_dssp EEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSCCTT
T ss_pred EEEEEcCC-------CCCcHHHHHHHHHHHhCC-CEEEEeeCCCCcc
Confidence 67777642 111234667999999988 6999998765443
No 262
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=43.54 E-value=26 Score=31.39 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=26.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+.|||+++. ..|+.+. .+++.|.++||+|.+++....
T Consensus 6 ~~~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITG-------GAGFIGG---HLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEET-------TTSHHHH---HHHHHHHHTTCCEEEECCCSS
T ss_pred CCCeEEEEC-------CCChHHH---HHHHHHHHCCCEEEEEecCCc
Confidence 346776664 3466665 678889999999999987654
No 263
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=43.50 E-value=1.4e+02 Score=24.79 Aligned_cols=105 Identities=15% Similarity=0.035 Sum_probs=60.1
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMA 397 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~ 397 (488)
..+++|+.+.+.. ..++..+-.|..... .++....+. ..|++++-..-++.-|..+++.+. .++|||.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVD--GAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS--HHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 3566677665422 122222333433332 455555554 357766532223334667777664 3678876
Q ss_pred e-CCCCc--ccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 398 T-RLASI--VGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 398 ~-~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
. ..... ..+.+..|..+++..| +.+++..+|..++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 4 22221 1134566778999999 999999999988753
No 264
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=43.43 E-value=23 Score=29.85 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=26.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
|||+++. ..|+.++ .+++.|.++|++|.++......
T Consensus 5 ~~ilItG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~~~ 40 (227)
T 3dhn_A 5 KKIVLIG-------ASGFVGS---ALLNEALNRGFEVTAVVRHPEK 40 (227)
T ss_dssp CEEEEET-------CCHHHHH---HHHHHHHTTTCEEEEECSCGGG
T ss_pred CEEEEEc-------CCchHHH---HHHHHHHHCCCEEEEEEcCccc
Confidence 5666654 3466655 6889999999999999877543
No 265
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=43.33 E-value=9.1 Score=35.26 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=50.5
Q ss_pred hhhhhhCCCCCCcEEEEEEeeec--cccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhCCcEEEeCccCH
Q 011355 281 DFKKKFGIPENRSLVLGMAGRLV--KDKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTNVIVLGPLDQ 358 (488)
Q Consensus 281 ~~r~~~~i~~~~~~~i~~~Grl~--~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~ 358 (488)
.+++ +|+ ..+ +-++..|.+. ..|+.+.+.+|++.++++. |++ .+.|.-+....+..-.....+.+.
T Consensus 198 ~~~~-~Gi-~Pr-VAlLs~~~~G~e~~~~~~~i~~A~~llk~~~----~~~--~v~Gpl~~D~a~~~~~~~~k~~~s--- 265 (337)
T 1r5j_A 198 TAKI-FDI-DPK-IAMLSFSTKGSGKAPQVDKVREATEIATGLN----PDL--ALDGELQFDAAFVPETAAIKAPDS--- 265 (337)
T ss_dssp HHHH-TTC-CCC-EEEECSCSTTSSCSHHHHHHHHHHHHHHHHC----TTS--CEEEEECHHHHHCHHHHHHHSCSC---
T ss_pred HHHH-cCC-CCe-EEEEecCccCCCCCCCcHHHHHHHHHHhccC----CCc--EEEecCcHHHhcCHHHHHhhCCCC---
Confidence 3444 888 555 6666664443 4466677899999888765 444 455643322221110000000000
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCChHHHHHHH
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLDHTVLEAML 390 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma 390 (488)
.+-..+|++|+|.+.....+.++++-+.
T Consensus 266 ----~~~G~aDvlv~p~~d~GnI~~K~l~~~~ 293 (337)
T 1r5j_A 266 ----AVAGQANTFVFPDLQSGNIGYKIAQRLG 293 (337)
T ss_dssp ----SSTTCCCEEECSSHHHHHHHHHHHHHTT
T ss_pred ----ccCCCCCEEEECChHHHHHHHHHHHHhc
Confidence 1125789999999753445666776554
No 266
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=43.04 E-value=13 Score=33.19 Aligned_cols=59 Identities=5% Similarity=-0.185 Sum_probs=37.4
Q ss_pred HHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCccccee---e--cCCceeEeCCC
Q 011355 360 RLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVI---V--GTDMGYLFSPQ 420 (488)
Q Consensus 360 ~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v---~--~~~~g~l~~~d 420 (488)
++.+++..+|++|--|. ++..--.+..++..|+|+|....|-.. +.. . ..+.+.++.+|
T Consensus 81 dl~~ll~~aDVvIDFT~-p~a~~~~~~~~l~~Gv~vViGTTG~~~-e~~~~L~~aa~~~~~~~a~N 144 (288)
T 3ijp_A 81 DPESAFSNTEGILDFSQ-PQASVLYANYAAQKSLIHIIGTTGFSK-TEEAQIADFAKYTTIVKSGN 144 (288)
T ss_dssp CHHHHTTSCSEEEECSC-HHHHHHHHHHHHHHTCEEEECCCCCCH-HHHHHHHHHHTTSEEEECSC
T ss_pred CHHHHhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEEEECCCCCH-HHHHHHHHHhCcCCEEEECC
Confidence 56667779999997664 344333456689999999987766433 211 1 12466666663
No 267
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=43.03 E-value=26 Score=31.76 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=25.1
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|||+++.. |.... .++..|.+.|++|+++....
T Consensus 2 ~mkI~IiGa--------GaiG~---~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 2 SLNILVIGT--------GAIGS---FYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp -CEEEEESC--------CHHHH---HHHHHHHHTTCEEEEECSTT
T ss_pred CCEEEEECc--------CHHHH---HHHHHHHhCCCeEEEEeCCh
Confidence 489999964 44443 47788888999999998753
No 268
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=42.99 E-value=1.6e+02 Score=26.46 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCc-EEEeCCCCccc-ceee----cCCceeEeCC-CHHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKP-LMATRLASIVG-SVIV----GTDMGYLFSP-QVESVKKALYG 430 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~P-VI~~~~~~~~~-e~v~----~~~~g~l~~~-d~~~la~~i~~ 430 (488)
.+++ .-++.||++|.-...-|++--.++++.. +.+ +|.... ++.. .... ...--++.+| +...+++.|.+
T Consensus 79 p~d~-~~l~~ADlvv~~G~~lE~w~~~~~~~~~-~~~~~v~~s~-~i~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~ 155 (313)
T 1toa_A 79 AGDV-EWLGNADLILYNGLHLETKMGEVFSKLR-GSRLVVAVSE-TIPVSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYE 155 (313)
T ss_dssp HHHH-HHHHHCSEEEECCTTCSTTCHHHHHHHT-TSSEEEEGGG-GSCGGGSCBSTTSCBCCCGGGSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHcCCEEEEcCCCcHHHHHHHHHhcc-CCCeEEEeec-CcccccccccCCCCCCCceeCCHHHHHHHHHHHHH
Confidence 4455 5679999999865434788888888876 444 443321 2210 0001 1133456666 67777777766
Q ss_pred HHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Q 011355 431 IWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 431 ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 470 (488)
.+. -+|+......+|+.++..+ .+..-+.+.+.+..+
T Consensus 156 ~L~~~DP~~a~~Y~~N~~~~~~~---L~~Ld~~~~~~l~~~ 193 (313)
T 1toa_A 156 SLCKLLPGKTREFTQRYQAYQQQ---LDKLDAYVRRKAQSL 193 (313)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred HHHHHChhhHHHHHHHHHHHHHH---HHHHHHHHHHHHhhC
Confidence 664 2376667777777777644 556666666655544
No 269
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=42.95 E-value=89 Score=22.30 Aligned_cols=75 Identities=5% Similarity=0.008 Sum_probs=44.6
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-CCCCcccceeecCCceeEeCC-CHHHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT-RLASIVGSVIVGTDMGYLFSP-QVESVKKALYG 430 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~-~~~~~~~e~v~~~~~g~l~~~-d~~~la~~i~~ 430 (488)
.++....+.. .|+++.-..-+..-|..+++.+. ...|+|.. .......+....|..+++..| +.+++...+..
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~ 113 (116)
T 3a10_A 34 GEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDMSSWAADEYVVKSFNFDELKEKVKK 113 (116)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGGGCGGGGGSSEEEECCSSTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchHHHHHhccccceEECCCCHHHHHHHHHH
Confidence 4555555543 57766532222333566666664 35677653 322221234455678999999 99999999887
Q ss_pred HH
Q 011355 431 IW 432 (488)
Q Consensus 431 ll 432 (488)
++
T Consensus 114 ~~ 115 (116)
T 3a10_A 114 LL 115 (116)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 270
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=42.94 E-value=33 Score=31.09 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=24.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|||++.. ..|++++ .+++.|.++||+|.++...
T Consensus 9 ~~~vlVTG-------atGfIG~---~l~~~Ll~~G~~V~~~~r~ 42 (338)
T 2rh8_A 9 KKTACVVG-------GTGFVAS---LLVKLLLQKGYAVNTTVRD 42 (338)
T ss_dssp CCEEEEEC-------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC-------CchHHHH---HHHHHHHHCCCEEEEEEcC
Confidence 45665554 4577666 5788899999999887654
No 271
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=42.80 E-value=53 Score=24.08 Aligned_cols=67 Identities=6% Similarity=0.030 Sum_probs=40.7
Q ss_pred cCEEEeCCCCCCCCChHHHHHHH-----cCCcEEEe-CCCCc--ccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAML-----SGKPLMAT-RLASI--VGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma-----~G~PVI~~-~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.|+++.-..-++.-|..+++.+. .++|+|.. ..... ..+.+..|..+++..| +.+++...+..++..
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 47 PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 46655422112223556676665 35677653 32221 1134566778999999 999999999887754
No 272
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=42.79 E-value=26 Score=27.53 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=24.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+.+|+++.. | +.-..+++.|.+.|++|+++...
T Consensus 2 ~~~~vlI~G~--------G---~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGH--------S---ILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEECC--------S---HHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEECC--------C---HHHHHHHHHHHHCCCCEEEEECC
Confidence 3457777742 3 23357889999999999999875
No 273
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=42.75 E-value=35 Score=31.46 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=29.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+||+++++. +....|=.+.+.+++..|++.|+.|.++..+.
T Consensus 24 ~~~~i~v~s----gKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFG----GKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEE----CSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEe----CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 455444443 22344555778899999999999999999876
No 274
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=42.70 E-value=25 Score=30.48 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=28.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
||||+..+. |=...-+..|+++|++.| +|+|+++..+...
T Consensus 1 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg 40 (244)
T 2e6c_A 1 MRILVTNDD-------GIYSPGLWALAEAASQFG-EVFVAAPDTEQSA 40 (244)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEECSSCCC
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCCCcC
Confidence 788887752 112344678999998888 9999999765443
No 275
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=42.64 E-value=87 Score=28.15 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-C-CeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR-G-HELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G-~~V~v~~~~~ 120 (488)
|++|||+++.. |+. ..++++|.+. | ++|.++....
T Consensus 2 m~~~~Ili~g~--------g~~----~~l~~~l~~~~~~~~v~~~d~~~ 38 (331)
T 2pn1_A 2 MQKPHLLITSA--------GRR----AKLVEYFVKEFKTGRVSTADCSP 38 (331)
T ss_dssp TTCCEEEEESC--------TTC----HHHHHHHHHHCCSSEEEEEESCT
T ss_pred CccceEEEecC--------Cch----HHHHHHHHHhcCCCEEEEEeCCC
Confidence 46799999864 221 3688888876 6 8888876543
No 276
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=42.54 E-value=50 Score=29.57 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=32.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.++|++.|++ ....-|-...+.+|+..|++.|..|.++-.+.
T Consensus 102 ~~~kvI~vts----~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 102 TENNILMITG----ATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CSCCEEEEEE----SSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCeEEEEEC----CCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4567777765 22345777889999999999999999997764
No 277
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=42.53 E-value=51 Score=28.53 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=29.1
Q ss_pred eEEEEEecCC----CCCCCCCcHH-HHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKW----PHRSHAGGLE-RHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~----p~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+||+++..+. .......|.+ .-+..-...|.+.|++|++++...
T Consensus 4 ~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g 52 (244)
T 3kkl_A 4 KRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETG 52 (244)
T ss_dssp CEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4899987642 1111223433 445667788999999999999864
No 278
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=42.51 E-value=32 Score=31.42 Aligned_cols=37 Identities=14% Similarity=-0.093 Sum_probs=27.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
..|||+++. ..|+.+. .+++.|.++||+|.++.....
T Consensus 24 ~~~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 24 SPKTWLITG-------VAGFIGS---NLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp SCCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEECCSS
T ss_pred CCCeEEEEC-------CCcHHHH---HHHHHHHHCCCEEEEEeCCCC
Confidence 456777664 3466665 688889999999999987643
No 279
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=42.48 E-value=1e+02 Score=22.76 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=42.2
Q ss_pred hcCEEEeCCCCCCCCChHHHHHHHc---CCcEEEe-CCCCc--ccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 367 AIDIFVNPTLRAQGLDHTVLEAMLS---GKPLMAT-RLASI--VGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 367 ~adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~-~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
..|+++.-...++.-|..+++.+.. ..|+|.. ..... ..+.+..|..+++..| +.+++.++|..+++.
T Consensus 46 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4566665332233445666666553 4667653 22221 1134566788999999 999999999998875
No 280
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=42.43 E-value=41 Score=29.11 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=31.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
+.||.++|+. .....|=......|+++|+++|+.|..+=+
T Consensus 19 ~m~k~i~Itg----T~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 19 FQGHMLFISA----TNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp CCCEEEEEEE----SSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hcCcEEEEEe----CCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 4578888886 335567777888999999999999998843
No 281
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=42.36 E-value=55 Score=24.88 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=39.2
Q ss_pred hcCEEEeCCCCCCCCChHHHHHHHc---CCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 367 AIDIFVNPTLRAQGLDHTVLEAMLS---GKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 367 ~adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
..|++|+-..-++.-|..+++.+.. .+|||.. ...... .+.+..|..+++..| +.++|..+|..++..
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3566554221122224445544432 5677654 322211 123456677899999 999999999998764
No 282
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=42.20 E-value=45 Score=27.53 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=26.5
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
||++... ...| .....++++.|.+.|++|+++.+.
T Consensus 3 ~IllgvT------Gs~a-a~k~~~l~~~L~~~g~~V~vv~T~ 37 (189)
T 2ejb_A 3 KIALCIT------GASG-VIYGIKLLQVLEELDFSVDLVISR 37 (189)
T ss_dssp EEEEEEC------SSTT-HHHHHHHHHHHHHTTCEEEEEECH
T ss_pred EEEEEEE------CHHH-HHHHHHHHHHHHHCCCEEEEEECh
Confidence 6777764 2233 346789999999999999999765
No 283
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=42.08 E-value=1.6e+02 Score=24.96 Aligned_cols=135 Identities=11% Similarity=0.005 Sum_probs=65.4
Q ss_pred HHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHhhhC--CcEEEe-CccCHHHHHHHHHhcCEEEeCCCCCCCCChHH
Q 011355 309 PLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLG--TNVIVL-GPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTV 385 (488)
Q Consensus 309 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~~l~--~~V~~~-g~v~~~~l~~~~~~adv~v~ps~~~eg~~~~~ 385 (488)
+.....+..|.+.+ ..++++.... .+.++++. .+|.+. +....+ .+..+|+++..+-. ......+
T Consensus 41 ~va~~ka~~Ll~~G------A~VtVvap~~-~~~l~~l~~~~~i~~i~~~~~~~----dL~~adLVIaAT~d-~~~N~~I 108 (223)
T 3dfz_A 41 TIATRRIKGFLQEG------AAITVVAPTV-SAEINEWEAKGQLRVKRKKVGEE----DLLNVFFIVVATND-QAVNKFV 108 (223)
T ss_dssp HHHHHHHHHHGGGC------CCEEEECSSC-CHHHHHHHHTTSCEEECSCCCGG----GSSSCSEEEECCCC-THHHHHH
T ss_pred HHHHHHHHHHHHCC------CEEEEECCCC-CHHHHHHHHcCCcEEEECCCCHh----HhCCCCEEEECCCC-HHHHHHH
Confidence 34455566666544 3445555322 23344432 345554 333333 35678988765532 3333445
Q ss_pred HHHHHcCCcEEEeCCCCccc----ceeecCCceeEeCC--CHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhhCC
Q 011355 386 LEAMLSGKPLMATRLASIVG----SVIVGTDMGYLFSP--QVESVKKALYGIWA----DGREVLEKKGLVARKRGLNLFT 455 (488)
Q Consensus 386 lEAma~G~PVI~~~~~~~~~----e~v~~~~~g~l~~~--d~~~la~~i~~ll~----~~~~~~~~~~~~a~~~~~~~fs 455 (488)
.++...|+||-..|.+.... .++..+.--+-+.. ..-.+++.|.+-++ ..-..+.......|+.+.+.+.
T Consensus 109 ~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~~~~ 188 (223)
T 3dfz_A 109 KQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHRLNV 188 (223)
T ss_dssp HHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHCC
Confidence 55545789998887765441 23444444444433 34455555555443 2123444445556677766543
No 284
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=42.06 E-value=1e+02 Score=22.84 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=48.4
Q ss_pred HHHHHHHHHh-------cCEEEeCCCCCCCCChHHHHHHHc----CCcEEE-eCCCCcc--cceeecCCceeEeCC-CHH
Q 011355 358 QTRLAMFYNA-------IDIFVNPTLRAQGLDHTVLEAMLS----GKPLMA-TRLASIV--GSVIVGTDMGYLFSP-QVE 422 (488)
Q Consensus 358 ~~~l~~~~~~-------adv~v~ps~~~eg~~~~~lEAma~----G~PVI~-~~~~~~~--~e~v~~~~~g~l~~~-d~~ 422 (488)
.++..+.+.. .|++++=-.-+..-|..+++.+.. ..|||. |...... .+.+..|-.+++..| +.+
T Consensus 36 ~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~ 115 (133)
T 2r25_B 36 GQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRP 115 (133)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 4455555543 588776322233346677777642 467775 4433321 134456788999999 999
Q ss_pred HHHHHHHHHHhc
Q 011355 423 SVKKALYGIWAD 434 (488)
Q Consensus 423 ~la~~i~~ll~~ 434 (488)
++.++|.+++..
T Consensus 116 ~L~~~l~~~~~~ 127 (133)
T 2r25_B 116 KLKTILTEFCAA 127 (133)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 285
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=41.95 E-value=42 Score=27.43 Aligned_cols=40 Identities=8% Similarity=0.132 Sum_probs=26.8
Q ss_pred eEEEEEecCCCCCCCCCc-HHHHHHHHHHHHHHC------CCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGG-LERHALTLHLALAKR------GHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG-~~~~~~~l~~~L~~~------G~~V~v~~~~~ 120 (488)
|||++|..+ +..+| ....+..+++.+.+. |++|.++....
T Consensus 1 Mkilii~gS----~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 1 MKVGIIMGS----VRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp CEEEEEECC----CCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred CeEEEEeCC----CCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 799999863 12234 445555667777765 79999987654
No 286
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=41.90 E-value=1e+02 Score=22.75 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=46.9
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+. ..|+++.-..-+..-|..+++.+. .++|+|.. ...... .+.+..|..+++..| +.+++..+|
T Consensus 36 ~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 115 (132)
T 3crn_A 36 AGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKI 115 (132)
T ss_dssp HHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHH
Confidence 445555544 357766532222233556666653 35777754 332211 134556788999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 116 ~~~~~~ 121 (132)
T 3crn_A 116 KEKLDE 121 (132)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 287
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=41.83 E-value=41 Score=26.41 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=27.2
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|..|||++=++ .+|.+. =..+.+.|.+.||+|.=+...
T Consensus 5 m~~mkI~igsD-------haG~~l-K~~i~~~L~~~G~eV~D~G~~ 42 (148)
T 4em8_A 5 MVVKRVFLSSD-------HAGVEL-RLFLSAYLRDLGCEVFDCGCD 42 (148)
T ss_dssp CSCSEEEEEEC-------GGGHHH-HHHHHHHHHHTTCEEEECCCC
T ss_pred ceeeEEEEEEC-------chhHHH-HHHHHHHHHHCCCEEEEeCCC
Confidence 34578888775 466654 346788999999999876554
No 288
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=41.75 E-value=30 Score=30.93 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=25.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|||+++. ..|+.++ .+++.|.++|++|.+++..
T Consensus 2 ~~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 2 SLKIAVTG-------GTGFLGQ---YVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC-------CCcHHHH---HHHHHHHhCCCEEEEEeCC
Confidence 36777664 3466655 6788999999999999877
No 289
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=41.72 E-value=51 Score=28.55 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||++.|++ .....|-.+.+.+|+.+|+++|+.|.++-.+.
T Consensus 2 ~~~I~v~s----~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 2 VRTITVAS----GKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp CEEEEEEE----SSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEEC----CCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 35555543 22445677889999999999999999997664
No 290
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=41.66 E-value=43 Score=29.57 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=28.4
Q ss_pred eEEEEEecCCCCCCCCCcHHH-HHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLER-HALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||++|..+ +..+|... .+..+++.|.+.|++|.++.....
T Consensus 3 mkiLiI~gS----pr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 3 RRALIVLAH----SERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CEEEEEECC----SCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CEEEEEEeC----CCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 799999863 23345444 445566778888999999887653
No 291
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=41.57 E-value=21 Score=32.01 Aligned_cols=43 Identities=12% Similarity=0.031 Sum_probs=28.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+|||+++...... ...-.-.....++++|.+.||+|..+...
T Consensus 2 ~~m~v~vl~gg~s~--e~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (307)
T 3r5x_A 2 NAMRIGVIMGGVSS--EKQVSIMTGNEMIANLDKNKYEIVPITLN 44 (307)
T ss_dssp CCEEEEEEECCSHH--HHHHHHHHHHHHHHHSCTTTEEEEEEECS
T ss_pred CCcEEEEEeCCCCc--chHhHHHHHHHHHHHHHHCCCEEEEEccc
Confidence 47999999841100 00011234567889999999999998775
No 292
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.54 E-value=1e+02 Score=22.51 Aligned_cols=105 Identities=13% Similarity=0.000 Sum_probs=58.7
Q ss_pred CeEEEEEeCCCch-h----HHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc-----CCcE
Q 011355 328 STVFLVAGDGPWG-A----RYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS-----GKPL 395 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~----~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~-----G~PV 395 (488)
..+++|+.+.+.. + .+++.+-.|..... .++....+.. .|+++.-..-++.-|..+++.+.. .+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMS--GTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESS--HHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 3466677654422 2 22222333433333 5566666653 577665322234446677777653 4787
Q ss_pred EEeCCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 396 MATRLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 396 I~~~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|........ .+.+..|..+++..| +.++|.+++......
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 81 VAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 764222211 133456678899999 999999999987664
No 293
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=41.48 E-value=96 Score=27.52 Aligned_cols=103 Identities=14% Similarity=0.039 Sum_probs=48.3
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCC--CCCCceEEEecCCCCccCcchhH
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFP--TYPISSLYFHLSKPTAAGYLDQS 149 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 149 (488)
.+++||+++.+. .| .-+..|..+.... +.+|.++.++..+.... ..+++...+..... ......
T Consensus 88 ~~~~ri~vl~Sg-------~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~---~r~~~~ 155 (286)
T 3n0v_A 88 NHRPKVVIMVSK-------AD--HCLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPK---DKPGQE 155 (286)
T ss_dssp TCCCEEEEEESS-------CC--HHHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCBTT---BHHHHH
T ss_pred CCCcEEEEEEeC-------CC--CCHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcC---CHHHHH
Confidence 357899999851 23 3344566655443 36777766654332111 14444444332111 111111
Q ss_pred HHHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
.......... ++|+|++..+. ++..+....+.-+.-+|.
T Consensus 156 ~~~~~~l~~~----~~Dlivla~y~~il~~~~l~~~~~~~iNiHp 196 (286)
T 3n0v_A 156 RKVLQVIEET----GAELVILARYMQVLSPELCRRLDGWAINIHH 196 (286)
T ss_dssp HHHHHHHHHH----TCSEEEESSCCSCCCHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHhc----CCCEEEecccccccCHHHHhhhcCCeEEecc
Confidence 2222222222 89999997653 222222222324566664
No 294
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=41.41 E-value=51 Score=28.32 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=28.3
Q ss_pred eEEEEEecCCCCCCCCCc-HHHHHHHHHHHHHHC-CCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGG-LERHALTLHLALAKR-GHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG-~~~~~~~l~~~L~~~-G~~V~v~~~~~ 120 (488)
|||++|..+ +..+| ....+..+++.|.+. |++|.++....
T Consensus 2 mkIliI~gS----~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~ 43 (242)
T 1sqs_A 2 NKIFIYAGV----RNHNSKTLEYTKRLSSIISSRNNVDISFRTPFN 43 (242)
T ss_dssp CEEEEEECC----CCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTT
T ss_pred CeEEEEECC----CCCCChHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 699999863 23334 455566678888887 99999987654
No 295
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.27 E-value=1e+02 Score=22.59 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=58.8
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHHc-----CCcE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAMLS-----GKPL 395 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma~-----G~PV 395 (488)
..+++|+.+.+.. ..+++.+-.|..... .++....+. ..|+++.-..-++.-|..+++.+.. ..|+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHN--GFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKI 83 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS--HHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCC--HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeE
Confidence 4466666654422 122222334444333 455555554 4567665332234446777777753 3455
Q ss_pred EEeCCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 396 MATRLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 396 I~~~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|.+...... .+.+..|..+++..| +.+++.++|.+....
T Consensus 84 i~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 84 LVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 554332211 134566788999999 999999999998765
No 296
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=41.26 E-value=27 Score=30.36 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=28.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
||||+..+. |=...-+..|+++|++.| +|+|+++..+...
T Consensus 1 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg 40 (247)
T 1j9j_A 1 MRILVTNDD-------GIQSKGIIVLAELLSEEH-EVFVVAPDKERSA 40 (247)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSCCTT
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCCCcC
Confidence 788887652 112244668999998887 9999999765443
No 297
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=41.24 E-value=35 Score=31.03 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=25.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|+|+++. ..|+.+. .+++.|.+.|++|.++....
T Consensus 26 ~~~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 61 (343)
T 2b69_A 26 DRKRILITG-------GAGFVGS---HLTDKLMMDGHEVTVVDNFF 61 (343)
T ss_dssp -CCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEEc-------CccHHHH---HHHHHHHHCCCEEEEEeCCC
Confidence 345666554 3566665 57888989999999987643
No 298
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=41.24 E-value=55 Score=29.05 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccce-ee--------------------c--CCcee
Q 011355 359 TRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSV-IV--------------------G--TDMGY 415 (488)
Q Consensus 359 ~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~-v~--------------------~--~~~g~ 415 (488)
.++ .-++.||++|.-...-|++--.+++++.....++.....++. -+ .. + ...-+
T Consensus 41 ~d~-~~l~~Adlvv~~G~~~E~w~~~~~~~~~~~~~~~v~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~ 118 (284)
T 2prs_A 41 SDV-KRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQVTIAQLEDVK-PLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHL 118 (284)
T ss_dssp THH-HHHHHCSEEEECCTTTCGGGHHHHHTSCGGGEEEGGGCTTTG-GGCCC---------------------CCCCCCG
T ss_pred HHH-HHHHcCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecCCCcc-cccccccccccccccccccccccCCCCCCCCcc
Confidence 344 567899998875543466666677665433334443333321 10 00 0 01224
Q ss_pred EeCC-CHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Q 011355 416 LFSP-QVESVKKALYGIWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 416 l~~~-d~~~la~~i~~ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 470 (488)
+.+| +...+++.|.+.+. -+|+......+|+.++..+ .+.+-+.+.+.+..+
T Consensus 119 Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~---L~~Ld~~~~~~l~~~ 172 (284)
T 2prs_A 119 WLSPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQ---LASTETQVGNELAPL 172 (284)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH---HHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 6666 67777777766654 2366666777777776644 455555555555443
No 299
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=41.12 E-value=1.3e+02 Score=23.87 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=40.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHHHHHHHH
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVWQQLQ 156 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 156 (488)
+||+|+...|-. -=.+.....-.+.|.+.|.+++++... +.+......+.+.
T Consensus 13 ~ri~IV~arfn~----~I~~~Ll~gA~~~l~~~G~~i~v~~VP------------------------GafEiP~aa~~la 64 (157)
T 2i0f_A 13 PHLLIVEARFYD----DLADALLDGAKAALDEAGATYDVVTVP------------------------GALEIPATISFAL 64 (157)
T ss_dssp CEEEEEEECSSH----HHHHHHHHHHHHHHHHTTCEEEEEEES------------------------SGGGHHHHHHHHH
T ss_pred cEEEEEEEeCcH----HHHHHHHHHHHHHHHHcCCCeEEEECC------------------------cHHHHHHHHHHHH
Confidence 799999987632 112233444456778888666666543 5566776666665
Q ss_pred HHh-cCCCCCcEEEeC
Q 011355 157 TQN-STGKPFDVIHTE 171 (488)
Q Consensus 157 ~~~-~~~~~~Dvv~~~ 171 (488)
... ....++|.|++-
T Consensus 65 ~~~~~~~~~yDavIaL 80 (157)
T 2i0f_A 65 DGADNGGTEYDGFVAL 80 (157)
T ss_dssp HHHHTTCCCCSEEEEE
T ss_pred hhccccCCCCCEEEEe
Confidence 441 011179999873
No 300
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=41.10 E-value=58 Score=28.22 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=29.0
Q ss_pred eEEEEEecCC-----CCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKW-----PHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~-----p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+||+++..+. ..+...|=.+.-+..-...|.+.|++|+++++..
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g 58 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETG 58 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3799987642 1111123334445666788999999999999764
No 301
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=41.10 E-value=53 Score=28.97 Aligned_cols=43 Identities=7% Similarity=-0.055 Sum_probs=28.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
..++|++|+.+ ..-.+..+--++..+.+.|++|++++.+.+..
T Consensus 6 ~~~rvLvv~aH------PDDe~lg~GGtia~~~~~G~~V~vv~~T~G~~ 48 (273)
T 3dff_A 6 GATRLLAISPH------LDDAVLSFGAGLAQAAQDGANVLVYTVFAGAA 48 (273)
T ss_dssp --CEEEEEESS------TTHHHHHHHHHHHHHHHTTCEEEEEETTCCCC
T ss_pred CCCCEEEEEeC------CChHHHhHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 35799999974 23333334445566777899999999887543
No 302
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=41.09 E-value=27 Score=30.41 Aligned_cols=33 Identities=9% Similarity=0.265 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..+|..+ .+++.|.+.|.+|.+....
T Consensus 3 K~vlVTG------as~GIG~---aia~~la~~Ga~V~~~~~~ 35 (247)
T 3ged_A 3 RGVIVTG------GGHGIGK---QICLDFLEAGDKVCFIDID 35 (247)
T ss_dssp CEEEEES------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEec------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5677774 5678776 6899999999999888654
No 303
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=41.07 E-value=1.4e+02 Score=24.52 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=39.9
Q ss_pred cCEEEeCCCCCCCCChHHHHHHH-------cCCcEEEeC-CCCcc---cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAML-------SGKPLMATR-LASIV---GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma-------~G~PVI~~~-~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.|++|+=..-++.-|..+++.+. ..+|||... ..... .+.+..|..+++..| + +|.++|..++..
T Consensus 120 ~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 120 FDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESK 196 (206)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC--
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhh
Confidence 57766632223444667777664 457887643 22111 134456788999998 7 899999988875
No 304
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=40.98 E-value=39 Score=28.13 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=27.4
Q ss_pred eEEEEEecCCCCCCCC--CcHH-HHHHHHHHHHHHCC--CeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHA--GGLE-RHALTLHLALAKRG--HELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~--gG~~-~~~~~l~~~L~~~G--~~V~v~~~~ 119 (488)
|||++|..+ +.. +|.. ..+..+++.+.+.| ++|.++...
T Consensus 2 ~kilii~gS----~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAH----PLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECC----SSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEec----CCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 699999863 232 4544 45566778888877 999998765
No 305
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=40.91 E-value=13 Score=30.99 Aligned_cols=39 Identities=8% Similarity=0.084 Sum_probs=28.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++|..+ | ..++ +.....+++++.+.|++|.++....
T Consensus 2 mkiLiI~gs-p---~~~~-s~l~~~l~~~~~~~g~ev~~~dL~~ 40 (192)
T 3f2v_A 2 PKTLIILAH-P---NISQ-STVHKHWSDAVRQHTDRFTVHELYA 40 (192)
T ss_dssp CCEEEEECC-T---TGGG-CSHHHHHHHHHTTCTTTEEEEEHHH
T ss_pred CEEEEEEeC-C---CccH-HHHHHHHHHHHHhCCCeEEEEEchh
Confidence 789999863 2 2222 3567778888888899999987654
No 306
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=40.82 E-value=1.1e+02 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=27.5
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+++|+. ..+|+.+ .+++.|.+.|++|.+.....
T Consensus 12 K~alVTG------as~GIG~---aia~~la~~Ga~V~~~~r~~ 45 (261)
T 4h15_A 12 KRALITA------GTKGAGA---ATVSLFLELGAQVLTTARAR 45 (261)
T ss_dssp CEEEESC------CSSHHHH---HHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEec------cCcHHHH---HHHHHHHHcCCEEEEEECCc
Confidence 7888885 5678876 58899999999998887653
No 307
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=40.81 E-value=1e+02 Score=22.35 Aligned_cols=77 Identities=6% Similarity=-0.015 Sum_probs=46.9
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+. ..|+++.-..-+..-|..+++.+. ..+|+|.. ...... .+....|..+++..| +.+++.+.+
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 115 (124)
T 1srr_A 36 GLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAV 115 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHH
Confidence 445555444 467776532222333566666664 36787754 333211 133456778999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 116 ~~~~~~ 121 (124)
T 1srr_A 116 KKYLPL 121 (124)
T ss_dssp HHHSCC
T ss_pred HHHhcc
Confidence 887654
No 308
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=40.68 E-value=1.4e+02 Score=25.06 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=42.5
Q ss_pred hcCEEEeCCCCCCCCChHHHHHHHc--CCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 367 AIDIFVNPTLRAQGLDHTVLEAMLS--GKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 367 ~adv~v~ps~~~eg~~~~~lEAma~--G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
..|++++-..-++.-|..+++.+.. ++|||.. ...... .+.+..|..|++..| +.+++..+|..++..
T Consensus 49 ~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 49 RPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3577665322223345666666643 6787763 222211 134566788999999 999999999988653
No 309
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=40.55 E-value=17 Score=34.07 Aligned_cols=46 Identities=7% Similarity=-0.036 Sum_probs=30.7
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|.+|||+++....-. ...-.-.....++++|.+.||+|..+....
T Consensus 34 ~m~~~~v~vl~GG~S~--E~evSl~Sa~~v~~al~~~~~~v~~i~i~~ 79 (383)
T 3k3p_A 34 SMSKETLVLLYGGRSA--ERDVSVLSAESVMRAINYDNFLVKTYFITQ 79 (383)
T ss_dssp ---CEEEEEEEECSST--THHHHHHHHHHHHHHSCTTTEEEEEEEECT
T ss_pred cccCCeEEEEeCCCCC--cchHHHHHHHHHHHHhhhcCCEEEEEEecC
Confidence 3567899999864311 222222567788899999999999998764
No 310
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=40.55 E-value=28 Score=29.36 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+..|||+++.. |.... .+++.|.+.|++|.++...
T Consensus 25 ~~~~~~I~iiG~--------G~~G~---~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 25 PDEAPKVGILGS--------GDFAR---SLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp ----CCEEEECC--------SHHHH---HHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEcc--------CHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 345689999963 44433 5778888899999887654
No 311
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=40.37 E-value=1.1e+02 Score=22.48 Aligned_cols=105 Identities=10% Similarity=0.179 Sum_probs=56.0
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEEeCccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc---CCcEEE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIVLGPLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS---GKPLMA 397 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~---G~PVI~ 397 (488)
..+++|+.+.+.. ..+++.+-.+.... +.++....+.. .|+++.-..-++.-|..+++.+.. .+|+|.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAA--DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLV 84 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEES--CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 4566666654422 12222333444333 35566565543 577666332233446677776653 467766
Q ss_pred eCCCCccc---ceeecCCceeEeCC--CHHHHHHHHHHHHhc
Q 011355 398 TRLASIVG---SVIVGTDMGYLFSP--QVESVKKALYGIWAD 434 (488)
Q Consensus 398 ~~~~~~~~---e~v~~~~~g~l~~~--d~~~la~~i~~ll~~ 434 (488)
.......+ +.+..|..+++..| +.+++.+.+..++..
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 43222121 34567788999998 689999999988865
No 312
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=40.33 E-value=17 Score=33.72 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=30.6
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|.+|||+++....-. ...-.-.....++++|.+.||+|+.+.....
T Consensus 1 m~~~~v~vl~GG~S~--E~evSl~S~~~v~~al~~~~~~v~~i~i~~~ 46 (364)
T 3i12_A 1 MAKLRVGIVFGGKSA--EHEVSLQSAKNIVDAIDKTRFDVVLLGIDKA 46 (364)
T ss_dssp -CCEEEEEEEECSST--THHHHHHHHHHHHHHSCTTTEEEEEEEECTT
T ss_pred CCccEEEEEeccCCC--CccchHHHHHHHHHHHhhcCCeEEEEEECCC
Confidence 467999999863211 1111124556788999999999999987643
No 313
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=40.29 E-value=33 Score=29.87 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=26.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 119 (488)
++|.++|+. ..||... .+++.|.+ .|++|.++...
T Consensus 3 ~~k~vlITG------asggIG~---~~a~~L~~~~g~~V~~~~r~ 38 (276)
T 1wma_A 3 GIHVALVTG------GNKGIGL---AIVRDLCRLFSGDVVLTARD 38 (276)
T ss_dssp CCCEEEESS------CSSHHHH---HHHHHHHHHSSSEEEEEESS
T ss_pred CCCEEEEeC------CCcHHHH---HHHHHHHHhcCCeEEEEeCC
Confidence 456667764 5677776 57888998 89999988764
No 314
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=40.29 E-value=33 Score=30.67 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=24.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
|||++.. ..||.++ .+++.|.++||+|.++..
T Consensus 1 m~vlVTG-------atG~iG~---~l~~~L~~~G~~V~~~~r 32 (311)
T 2p5y_A 1 MRVLVTG-------GAGFIGS---HIVEDLLARGLEVAVLDN 32 (311)
T ss_dssp CEEEEET-------TTSHHHH---HHHHHHHTTTCEEEEECC
T ss_pred CEEEEEe-------CCcHHHH---HHHHHHHHCCCEEEEEEC
Confidence 6766654 4577766 578889999999998865
No 315
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=40.22 E-value=30 Score=31.00 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+.|||+++.. |.+.. .++..|.+.||+|+++...
T Consensus 2 ~~m~i~iiG~--------G~~G~---~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 2 NAMKIAIAGA--------GAMGS---RLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp --CEEEEECC--------SHHHH---HHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEECc--------CHHHH---HHHHHHHhCCCcEEEEECC
Confidence 3589999964 43333 5778888999999988654
No 316
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=40.20 E-value=31 Score=27.32 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=39.1
Q ss_pred HHHHHhcCEEEeCCCCCCCCChHHHH---HHHcCCcEEEeCCCC---cccceeec---CCceeEeCCCHHHHHHHHHHHH
Q 011355 362 AMFYNAIDIFVNPTLRAQGLDHTVLE---AMLSGKPLMATRLAS---IVGSVIVG---TDMGYLFSPQVESVKKALYGIW 432 (488)
Q Consensus 362 ~~~~~~adv~v~ps~~~eg~~~~~lE---Ama~G~PVI~~~~~~---~~~e~v~~---~~~g~l~~~d~~~la~~i~~ll 432 (488)
.+.+..||++|.--. +.-+.+..| |.+.|+||++--.+. .-.-++.. +..-.+.+.+.+++.+.|.+++
T Consensus 63 ~~~i~~aD~vvA~l~--~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~ 140 (152)
T 4fyk_A 63 LNWLQQADVVVAEVT--QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYF 140 (152)
T ss_dssp HHHHHHCSEEEEECS--SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCC--CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHH
Confidence 367899999887432 222346666 889999999932211 11011111 1122222232288888888877
Q ss_pred hc
Q 011355 433 AD 434 (488)
Q Consensus 433 ~~ 434 (488)
+.
T Consensus 141 ~~ 142 (152)
T 4fyk_A 141 EA 142 (152)
T ss_dssp C-
T ss_pred Hh
Confidence 65
No 317
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=40.12 E-value=48 Score=27.26 Aligned_cols=40 Identities=8% Similarity=-0.001 Sum_probs=27.6
Q ss_pred eEEEEEecCCCCCCCC--CcHHHHHHHHHHHHHHCC--CeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHA--GGLERHALTLHLALAKRG--HELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~--gG~~~~~~~l~~~L~~~G--~~V~v~~~~~ 120 (488)
|||++|..+ +.. |-....+..+++.+.+.| ++|.++....
T Consensus 2 mkilii~~S----~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~ 45 (201)
T 1t5b_A 2 SKVLVLKSS----ILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAA 45 (201)
T ss_dssp CEEEEEECC----SSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTT
T ss_pred CeEEEEEeC----CCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 699999863 232 334455666778888776 8999887764
No 318
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=39.92 E-value=41 Score=28.64 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=25.9
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 4 k~vlITG------as~gIG~---~~a~~l~~~G~~V~~~~r~~ 37 (236)
T 1ooe_A 4 GKVIVYG------GKGALGS---AILEFFKKNGYTVLNIDLSA 37 (236)
T ss_dssp EEEEEET------TTSHHHH---HHHHHHHHTTEEEEEEESSC
T ss_pred CEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEecCc
Confidence 5566664 5677776 68899999999999887654
No 319
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=39.79 E-value=36 Score=30.53 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
..|+.++ .+++.|.++|++|.++.....
T Consensus 20 atG~iG~---~l~~~L~~~G~~V~~~~r~~~ 47 (321)
T 2pk3_A 20 VAGFVGK---YLANHLTEQNVEVFGTSRNNE 47 (321)
T ss_dssp TTSHHHH---HHHHHHHHTTCEEEEEESCTT
T ss_pred CCChHHH---HHHHHHHHCCCEEEEEecCCc
Confidence 4577766 578889999999999876643
No 320
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=39.72 E-value=1.8e+02 Score=24.87 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=40.7
Q ss_pred cCEEEeCCCCCCCCChHHHHHHH---cCCcEEEeCCCCcc---cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAML---SGKPLMATRLASIV---GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.|++++=-.-++.-|..+++.+. ..+|||........ .+.+..|-.+++..| +.++|.+.|..++..
T Consensus 174 ~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 174 IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHH
Confidence 46655421112233556666553 46788764322212 133456778999999 999999999988764
No 321
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=39.63 E-value=23 Score=29.11 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=27.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
||++... ...|+ ....++++.|.+.|++|.++.+....
T Consensus 4 ~IllgvT------Gs~aa-~k~~~l~~~L~~~g~~V~vv~T~~A~ 41 (181)
T 1g63_A 4 KLLICAT------ASINV-ININHYIVELKQHFDEVNILFSPSSK 41 (181)
T ss_dssp CEEEEEC------SCGGG-GGHHHHHHHHTTTSSCEEEEECGGGG
T ss_pred EEEEEEE------CHHHH-HHHHHHHHHHHHCCCEEEEEEchhHH
Confidence 6777764 22333 36779999999999999999877543
No 322
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=39.56 E-value=30 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=27.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+.|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 23 ~~~k~vlITG------as~gIG~---~~a~~l~~~G~~v~~~~~~ 58 (269)
T 3gk3_A 23 QAKRVAFVTG------GMGGLGA---AISRRLHDAGMAVAVSHSE 58 (269)
T ss_dssp -CCCEEEETT------TTSHHHH---HHHHHHHTTTCEEEEEECS
T ss_pred hcCCEEEEEC------CCchHHH---HHHHHHHHCCCEEEEEcCC
Confidence 3457888875 5677776 6889999999999888643
No 323
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=39.52 E-value=54 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=26.0
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 16 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~~ 49 (247)
T 1uzm_A 16 RSVLVTG------GNRGIGL---AIAQRLAADGHKVAVTHRGS 49 (247)
T ss_dssp CEEEETT------TTSHHHH---HHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCCh
Confidence 5666764 5677776 58889999999999887654
No 324
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=39.52 E-value=76 Score=27.09 Aligned_cols=40 Identities=18% Similarity=0.032 Sum_probs=29.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.++||.+... ...|=...+.+++..|.++|++|.++....
T Consensus 5 g~l~I~~~~k------gGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 5 GRLKVFLGAA------PGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCEEEEEESS------TTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ceEEEEEECC------CCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4566555543 345556667899999999999998888765
No 325
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=39.51 E-value=34 Score=30.22 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+.|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 23 ~~k~~lVTG------as~GIG~---aia~~la~~G~~V~~~~r~ 57 (279)
T 3sju_A 23 RPQTAFVTG------VSSGIGL---AVARTLAARGIAVYGCARD 57 (279)
T ss_dssp --CEEEEES------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 457788885 5678776 6889999999999887654
No 326
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=39.23 E-value=31 Score=30.61 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=28.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCS 124 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 124 (488)
||||+..+. |=...-+..|+++|++.| +|+|+++..+...
T Consensus 1 M~ILlTNDD-------Gi~ApGi~aL~~aL~~~g-~V~VVAP~~~qSg 40 (280)
T 1l5x_A 1 MKILVTNDD-------GVHSPGLRLLYQFALSLG-DVDVVAPESPKSA 40 (280)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHGGGS-EEEEEEESSCTTT
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCCCcC
Confidence 788887752 112244668999999888 9999999765443
No 327
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=39.05 E-value=1.2e+02 Score=26.88 Aligned_cols=103 Identities=11% Similarity=0.059 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCC--CCCCceEEEecCCCCccCcchhH
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSFP--TYPISSLYFHLSKPTAAGYLDQS 149 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 149 (488)
.+++||+++.+. .| .-+..|..+.... +.+|.++.++..+.... ..+++...+..... ......
T Consensus 93 ~~~~ri~vl~Sg-------~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~---~r~~~~ 160 (292)
T 3lou_A 93 AARPKVLIMVSK-------LE--HCLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGLPFRHFPITAD---TKAQQE 160 (292)
T ss_dssp TSCCEEEEEECS-------CC--HHHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCSS---CHHHHH
T ss_pred CCCCEEEEEEcC-------CC--cCHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcC---CHHHHH
Confidence 356799999851 23 2345566665543 45777666654332111 14444444332111 111111
Q ss_pred HHHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
..+....... ++|+|++-.+. ++.-+....+.-+.-+|.
T Consensus 161 ~~~~~~l~~~----~~Dlivla~y~~il~~~~l~~~~~~~iNiHp 201 (292)
T 3lou_A 161 AQWLDVFETS----GAELVILARYMQVLSPEASARLANRAINIHH 201 (292)
T ss_dssp HHHHHHHHHH----TCSEEEESSCCSCCCHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHh----CCCEEEecCchhhCCHHHHhhhcCCeEEeCC
Confidence 2222222222 89999997653 222222222324566664
No 328
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=38.73 E-value=36 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|+++|+. ..||.++ .+++.|.+.|++|.++...
T Consensus 4 ~k~~lVTG------as~GIG~---aia~~la~~G~~V~~~~r~ 37 (264)
T 3tfo_A 4 DKVILITG------ASGGIGE---GIARELGVAGAKILLGARR 37 (264)
T ss_dssp TCEEEESS------TTSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeC------CccHHHH---HHHHHHHHCCCEEEEEECC
Confidence 36777774 5678776 6889999999999888654
No 329
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=38.71 E-value=26 Score=30.76 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=26.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+|++++. ..+.||-. +-.++.|...|++|.|+...
T Consensus 87 ~vlVlcG----~GNNGGDG---lv~AR~L~~~G~~V~v~~~~ 121 (259)
T 3d3k_A 87 TVALLCG----PHVKGAQG---ISCGRHLANHDVQVILFLPN 121 (259)
T ss_dssp EEEEEEC----SSHHHHHH---HHHHHHHHHTTCEEEEECCB
T ss_pred eEEEEEC----CCCCHHHH---HHHHHHHHHCCCeEEEEEec
Confidence 7899986 23555554 35789999999999998765
No 330
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=38.50 E-value=33 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=24.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
++|||+++.. |.+.. .++..|.+.||+|+++...
T Consensus 3 ~~mki~iiG~--------G~~G~---~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 3 ESKTYAVLGL--------GNGGH---AFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp -CCEEEEECC--------SHHHH---HHHHHHHHTTCEEEEECSC
T ss_pred CcCeEEEECC--------CHHHH---HHHHHHHhCCCEEEEEeCC
Confidence 4589999964 44443 4677888899999988654
No 331
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=38.46 E-value=66 Score=28.28 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=29.3
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
..|+|++|+.+ ..-.+..+--++..+.+.|++|.+++.+.+..
T Consensus 6 ~~~rvLvv~aH------PDDe~l~~GGtia~~~~~G~~V~vv~~T~Ge~ 48 (270)
T 3dfi_A 6 DRTRILAISPH------LDDAVLSVGASLAQAEQDGGKVTVFTVFAGSA 48 (270)
T ss_dssp CCSEEEEEESS------TTHHHHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred CCCCEEEEEeC------CchHHHhhHHHHHHHHhCCCeEEEEEEeCCCC
Confidence 35799999974 23333444445566677899999999887543
No 332
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=38.46 E-value=1.1e+02 Score=22.07 Aligned_cols=76 Identities=8% Similarity=0.005 Sum_probs=46.6
Q ss_pred HHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHH--cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAML--SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma--~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
.++....+.. .|+++.-..-+..-|..+++.+. ...|+|.. ...... .+.+..|..+++..| +.+++...+.
T Consensus 36 ~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~ 115 (123)
T 1xhf_A 36 GAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 (123)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHH
Confidence 4555555553 57776633222333556666553 46777754 333211 123456788999999 9999999998
Q ss_pred HHHh
Q 011355 430 GIWA 433 (488)
Q Consensus 430 ~ll~ 433 (488)
.++.
T Consensus 116 ~~~~ 119 (123)
T 1xhf_A 116 NLLS 119 (123)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 333
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=38.39 E-value=51 Score=27.95 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=27.9
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHH-HHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHA-LTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~-~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|||++|..+--.....++....+ ..+.+.+.+.|++|.++....
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~ 70 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ 70 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC
Confidence 469999986321100134555443 445666777899999988753
No 334
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=38.18 E-value=1.2e+02 Score=22.47 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=58.8
Q ss_pred CeEEEEEeCCCch-----hHHhhhCCcEEE-eCccCHHHHHHHHH--hcCEEEeCCCCC-CCCChHHHHHHH--cCCcEE
Q 011355 328 STVFLVAGDGPWG-----ARYRDLGTNVIV-LGPLDQTRLAMFYN--AIDIFVNPTLRA-QGLDHTVLEAML--SGKPLM 396 (488)
Q Consensus 328 ~~~l~ivG~g~~~-----~~~~~l~~~V~~-~g~v~~~~l~~~~~--~adv~v~ps~~~-eg~~~~~lEAma--~G~PVI 396 (488)
..+++|+.+.+.. ..+++.+-.|.. ... .++....+. ..|+++.-...+ +.-|..+++.+. .++|+|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~--~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii 86 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDN--GEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPII 86 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESS--HHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECC--HHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEE
Confidence 4566666654322 122223333331 333 445555554 357766633222 233555666554 478887
Q ss_pred Ee-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 397 AT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 397 ~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
.. ...... .+.+..|..+++..| +.+++...|..+++.
T Consensus 87 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 87 FITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 64 332211 133456778999999 999999999998765
No 335
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=38.09 E-value=1.2e+02 Score=27.16 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=48.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCC--CCCCCceEEEecCCCCccCcchhHH
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASCLNCSF--PTYPISSLYFHLSKPTAAGYLDQSI 150 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (488)
++|||+++.+. +|. -+..|..+.... +.+|.++.++..+... ...+++...+..... .......
T Consensus 104 ~~~ri~vl~Sg-------~g~--nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~gIp~~~~~~~~~---~r~~~~~ 171 (302)
T 3o1l_A 104 QKKRVVLMASR-------ESH--CLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDIPYYHVPVDPK---DKEPAFA 171 (302)
T ss_dssp SCCEEEEEECS-------CCH--HHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTTTCCEEECCCCSS---CCHHHHH
T ss_pred CCcEEEEEEeC-------Cch--hHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHcCCCEEEcCCCcC---CHHHHHH
Confidence 46899999851 232 344566655443 4677776665433211 113444444322111 1111222
Q ss_pred HHHHHHHHhcCCCCCcEEEeCCcc--hHHhhhccCCcEEEeeeC
Q 011355 151 VWQQLQTQNSTGKPFDVIHTESVG--LRHTRARNLTNVVVSWHG 192 (488)
Q Consensus 151 ~~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~p~~v~~~h~ 192 (488)
.+..... .. +||+|++..+. ++..+....+.-+.-+|.
T Consensus 172 ~~~~~l~---~~-~~DliVlagym~IL~~~~l~~~~~~~INiHp 211 (302)
T 3o1l_A 172 EVSRLVG---HH-QADVVVLARYMQILPPQLCREYAHQVINIHH 211 (302)
T ss_dssp HHHHHHH---HT-TCSEEEESSCCSCCCTTHHHHTTTCEEEEES
T ss_pred HHHHHHH---Hh-CCCEEEHhHhhhhcCHHHHhhhhCCeEEeCc
Confidence 2222222 22 89999997653 222222222335667775
No 336
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=38.08 E-value=43 Score=29.16 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=30.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
||++.|+. ....|-.+.+.+|+.+|+++|+.|.++-.+..
T Consensus 1 M~vI~vs~-----KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 1 MRQVAIYG-----KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEE-----CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CcEEEEec-----CCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 66655552 23456667888999999999999999977653
No 337
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=38.00 E-value=59 Score=25.86 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=28.2
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|||+++.. .|-...-+....+.|.+.|++|.+++...
T Consensus 2 ~~ki~il~~-------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~ 39 (168)
T 3l18_A 2 SMKVLFLSA-------DGFEDLELIYPLHRIKEEGHEVYVASFQR 39 (168)
T ss_dssp CCEEEEECC-------TTBCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEEeC-------CCccHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 589999974 13334445567788889999999998764
No 338
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=37.93 E-value=40 Score=29.41 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=25.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 8 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 40 (267)
T 2gdz_A 8 KVALVTG------AAQGIGR---AFAEALLLKGAKVALVDWN 40 (267)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCCcHHH---HHHHHHHHCCCEEEEEECC
Confidence 5666664 5678776 5788999999999988754
No 339
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=37.77 E-value=41 Score=29.43 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 21 ~k~~lVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 54 (267)
T 1vl8_A 21 GRVALVTG------GSRGLGF---GIAQGLAEAGCSVVVASRN 54 (267)
T ss_dssp TCEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 46777774 5678776 6889999999999988754
No 340
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=37.67 E-value=2e+02 Score=24.74 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=28.2
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|+++|+. ..+|+.+ .+++.|.+.|.+|.+......
T Consensus 12 K~alVTG------as~GIG~---aia~~la~~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 12 QQVLVTG------GSSGIGA---AIAMQFAELGAEVVALGLDAD 46 (242)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESSTT
T ss_pred CEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCCHH
Confidence 7888885 5678876 688999999999998876543
No 341
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=37.58 E-value=57 Score=30.21 Aligned_cols=81 Identities=6% Similarity=-0.075 Sum_probs=50.0
Q ss_pred HHHHHHHhcCEEEeC--CCCCCCCChHHHHHHHcCCcEEEeCCCCcccceeecCCceeEeCC--CHHHHHHHHHHHHhcC
Q 011355 360 RLAMFYNAIDIFVNP--TLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSP--QVESVKKALYGIWADG 435 (488)
Q Consensus 360 ~l~~~~~~adv~v~p--s~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~v~~~~~g~l~~~--d~~~la~~i~~ll~~~ 435 (488)
+..++++.....+.. |...+=.-=++.+|+.+|+-.|.-..+.+. +.+. .+.-+-++. ++++||+.|..|-+|
T Consensus 224 ~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~-~~~P-p~SfI~~~dF~s~~~La~yL~~L~~n- 300 (371)
T 2nzw_A 224 NKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVA-KDFN-PKSFVNVHDFKNFDEAIDYIKYLHTH- 300 (371)
T ss_dssp CHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGG-GTSC-GGGSEEGGGSSSHHHHHHHHHHHHTC-
T ss_pred cHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchh-hhCC-CCceEEcccCCCHHHHHHHHHHHhcC-
Confidence 445667777776652 322122245889999999644444334444 4443 223333433 899999999999999
Q ss_pred HHHHHHHH
Q 011355 436 REVLEKKG 443 (488)
Q Consensus 436 ~~~~~~~~ 443 (488)
++.+.++-
T Consensus 301 ~~~Y~~y~ 308 (371)
T 2nzw_A 301 KNAYLDML 308 (371)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
No 342
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=37.52 E-value=40 Score=28.52 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
+..|||+||.. | ..-..++..|.+.|++|.++..
T Consensus 21 m~mmkI~IIG~--------G---~mG~~la~~l~~~g~~V~~v~~ 54 (220)
T 4huj_A 21 QSMTTYAIIGA--------G---AIGSALAERFTAAQIPAIIANS 54 (220)
T ss_dssp GGSCCEEEEEC--------H---HHHHHHHHHHHHTTCCEEEECT
T ss_pred hcCCEEEEECC--------C---HHHHHHHHHHHhCCCEEEEEEC
Confidence 34579999974 2 2334688889999999988443
No 343
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=37.49 E-value=59 Score=28.87 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=32.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.++|++.|++ ....-|-...+.+|+..|++.|..|.++-.+..
T Consensus 90 ~~~kvI~vts----~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 90 AQNNVLMMTG----VSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TTCCEEEEEE----SSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCCeEEEEEC----CCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 3457776765 224457778889999999999999999987653
No 344
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=37.46 E-value=50 Score=29.22 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=30.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
||++.|+. ....|-.+.+.+|+.+|+++|+.|.++-.+..
T Consensus 2 MkvIavs~-----KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYG-----KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEE-----CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred ceEEEEeC-----CCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 67666652 24456677888999999999999999987653
No 345
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=37.37 E-value=51 Score=27.29 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=25.4
Q ss_pred eEEEEEecCCCCCCCCCcHHH-HHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLER-HALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
|||++|..+ | ..++... .+..+++.+ +.|++|.++.....
T Consensus 1 MkiLiI~gs-p---r~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~ 41 (196)
T 3lcm_A 1 MKILIVYTH-P---NPTSFNAEILKQVQTNL-SKEHTVSTLDLYAE 41 (196)
T ss_dssp CEEEEEECC-S---CTTSHHHHHHHHHHHHS-CTTSEEEEEETTTT
T ss_pred CEEEEEEeC-C---CCCChHHHHHHHHHHHh-cCCCeEEEEEcccC
Confidence 899999864 2 3344433 333344445 56999999987653
No 346
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=37.11 E-value=39 Score=31.16 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=25.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~ 120 (488)
..|||+++. ..|+.+. .+++.|.++ ||+|.++....
T Consensus 23 ~~~~vlVtG-------atG~iG~---~l~~~L~~~~g~~V~~~~r~~ 59 (372)
T 3slg_A 23 KAKKVLILG-------VNGFIGH---HLSKRILETTDWEVFGMDMQT 59 (372)
T ss_dssp CCCEEEEES-------CSSHHHH---HHHHHHHHHSSCEEEEEESCC
T ss_pred CCCEEEEEC-------CCChHHH---HHHHHHHhCCCCEEEEEeCCh
Confidence 345666654 3466665 578888887 99999998764
No 347
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=37.05 E-value=1.1e+02 Score=27.49 Aligned_cols=104 Identities=8% Similarity=0.005 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcccce-ee----c--CCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSV-IV----G--TDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~~e~-v~----~--~~~g~l~~~-d~~~la~~i~ 429 (488)
..++ .-++.||++|.-...-|+|--.+++... +.++|.... ++. .+ .. + ..--++.+| +...+++.|.
T Consensus 72 p~d~-~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~-gi~-~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~ 147 (307)
T 3ujp_A 72 PSDI-VKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTE-GIE-PIPIADGPYTDKPNPHAWMSPRNALVYVENIR 147 (307)
T ss_dssp HHHH-HHHHHCSEEEECCTTSSTTHHHHHHTSC-SCCEEETTT-TCC-CCBCCSSSSTTSBCCCCTTCHHHHHHHHHHHH
T ss_pred HHHH-HHHhcCCEEEEcCCChHHHHHHHHHhCC-CCCEEEeeC-Ccc-ccccccccCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 3444 6678899998865434776666666542 456665432 222 11 00 0 122356666 7777777777
Q ss_pred HHHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 011355 430 GIWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFL 468 (488)
Q Consensus 430 ~ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 468 (488)
+.+. -+|+......+|+.++..+ ++.+-+.+.+.+.
T Consensus 148 ~~L~~~DP~~a~~Y~~Na~~~~~~---L~~Ld~~~~~~l~ 184 (307)
T 3ujp_A 148 QAFVELDPDNAKYYNANAAVYSEQ---LKAIDRQLGADLE 184 (307)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHH---HHHHHHHHHHHHS
T ss_pred HHHHHhCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 6664 2366666666777666644 4444444444443
No 348
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=36.87 E-value=40 Score=30.80 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=26.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|+|++.. ..|+.+. .+++.|.+.||+|.++....
T Consensus 8 ~~~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 43 (357)
T 1rkx_A 8 QGKRVFVTG-------HTGFKGG---WLSLWLQTMGATVKGYSLTA 43 (357)
T ss_dssp TTCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEC-------CCchHHH---HHHHHHHhCCCeEEEEeCCC
Confidence 346776664 4577666 57888999999999988754
No 349
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=36.80 E-value=38 Score=30.87 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=25.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+|||+|+.. |.... .++..|.+.||+|+++...
T Consensus 13 ~~~kI~iIG~--------G~mG~---ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGA--------GSWGT---VFAQMLHENGEEVILWARR 46 (335)
T ss_dssp -CCEEEEECC--------SHHHH---HHHHHHHHTTCEEEEECSS
T ss_pred cCCcEEEECc--------CHHHH---HHHHHHHhCCCeEEEEeCC
Confidence 5789999975 33333 5788889999999988664
No 350
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=36.80 E-value=45 Score=28.32 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=25.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC--eEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH--ELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~ 120 (488)
.|+|++.. ..||.++ .+++.|.++|+ +|.++....
T Consensus 18 ~~~vlVtG-------asg~iG~---~l~~~L~~~G~~~~V~~~~r~~ 54 (242)
T 2bka_A 18 NKSVFILG-------ASGETGR---VLLKEILEQGLFSKVTLIGRRK 54 (242)
T ss_dssp CCEEEEEC-------TTSHHHH---HHHHHHHHHTCCSEEEEEESSC
T ss_pred CCeEEEEC-------CCcHHHH---HHHHHHHcCCCCCEEEEEEcCC
Confidence 35655554 4577776 57888999999 999987654
No 351
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=36.71 E-value=67 Score=28.64 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=31.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++||++.|+. ....|-.+.+.+|+.+|+++|+.|.++-.+.
T Consensus 39 ~~~~vI~v~~-----KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYG-----KGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEEC-----STTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCceEEEEEC-----CCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4677766663 1456777889999999999999999998875
No 352
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=36.58 E-value=1.6e+02 Score=23.33 Aligned_cols=45 Identities=11% Similarity=-0.032 Sum_probs=28.9
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+.||+++.++.-.+........+...+.+.|.+.|..+.++....
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~ 46 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASI 46 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCc
Confidence 358999987543211111224566788888988888888876554
No 353
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=36.42 E-value=29 Score=31.29 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=26.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+|++++. ..+.||-. +-.++.|...|++|.|+...
T Consensus 134 ~vlVlcG----~GNNGGDG---lv~AR~L~~~G~~V~V~~~~ 168 (306)
T 3d3j_A 134 TVALLCG----PHVKGAQG---ISCGRHLANHDVQVILFLPN 168 (306)
T ss_dssp EEEEEEC----SSHHHHHH---HHHHHHHHHTTCEEEEECCC
T ss_pred eEEEEEC----CCCCHHHH---HHHHHHHHHCCCcEEEEEec
Confidence 7999986 33555554 35789999999999998765
No 354
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=36.30 E-value=30 Score=31.60 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=25.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..|||+++.. |.... .++..|.+.|++|+++...
T Consensus 2 ~~mkI~IiGa--------G~~G~---~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 2 SLTRICIVGA--------GAVGG---YLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCCEEEESC--------CHHHH---HHHHHHHHTTCCEEEECCH
T ss_pred CCCEEEEECc--------CHHHH---HHHHHHHHCCCEEEEEECh
Confidence 3589999964 44433 4778888899999999863
No 355
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=36.16 E-value=37 Score=29.83 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=25.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 22 k~vlVTG------as~gIG~---aia~~La~~G~~V~~~~r~ 54 (272)
T 2nwq_A 22 STLFITG------ATSGFGE---ACARRFAEAGWSLVLTGRR 54 (272)
T ss_dssp CEEEESS------TTTSSHH---HHHHHHHHTTCEEEEEESC
T ss_pred cEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEECC
Confidence 6677774 5677776 5889999999999988654
No 356
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=36.09 E-value=1.4e+02 Score=25.42 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=38.9
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHc--CCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHHHHHh
Q 011355 368 IDIFVNPTLRAQGLDHTVLEAMLS--GKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALYGIWA 433 (488)
Q Consensus 368 adv~v~ps~~~eg~~~~~lEAma~--G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~~ll~ 433 (488)
.|++++=..-++.-|..+++.+.. .+|||........+ +.+..|..|++..| +.++|.++|..++.
T Consensus 82 ~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 82 PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 466554221122224455555443 46776543222111 33456788999999 99999999998876
No 357
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=35.98 E-value=1.8e+02 Score=23.89 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEeCCCCcc---cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMATRLASIV---GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~~~~~~~---~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+. ..|+++.-..-+..-|..+++.+. ..+|||........ .+.+..|..|++..| +.+++..+|
T Consensus 35 ~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i 114 (225)
T 1kgs_A 35 GEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARV 114 (225)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHH
Confidence 445555544 357766532223334666777664 36788764322211 134566788999999 999999999
Q ss_pred HHHHh
Q 011355 429 YGIWA 433 (488)
Q Consensus 429 ~~ll~ 433 (488)
..++.
T Consensus 115 ~~~~~ 119 (225)
T 1kgs_A 115 RALIR 119 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98875
No 358
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=35.84 E-value=56 Score=29.04 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=24.9
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||... .+++.|.++|++|.++...
T Consensus 19 k~vlVTG------asggIG~---~la~~l~~~G~~V~~~~r~ 51 (303)
T 1yxm_A 19 QVAIVTG------GATGIGK---AIVKELLELGSNVVIASRK 51 (303)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 4556664 4677776 6889999999999988754
No 359
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=35.78 E-value=27 Score=31.35 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
..|||+++. ..|+.+. .+++.|.+.||+|.++..
T Consensus 2 ~~~~ilVtG-------atG~iG~---~l~~~L~~~g~~v~~~~r 35 (321)
T 1e6u_A 2 AKQRVFIAG-------HRGMVGS---AIRRQLEQRGDVELVLRT 35 (321)
T ss_dssp CCEEEEEET-------TTSHHHH---HHHHHHTTCTTEEEECCC
T ss_pred CCCEEEEEC-------CCcHHHH---HHHHHHHhCCCeEEEEec
Confidence 357877665 3466665 578889899999887653
No 360
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2
Probab=35.77 E-value=39 Score=29.32 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=27.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC---CeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG---HELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G---~~V~v~~~~~ 120 (488)
.+||.++|+. ..||..+ .+++.|.++| ++|.++....
T Consensus 19 ~~~k~vlITG------asggIG~---~la~~L~~~G~~~~~V~~~~r~~ 58 (267)
T 1sny_A 19 SHMNSILITG------CNRGLGL---GLVKALLNLPQPPQHLFTTCRNR 58 (267)
T ss_dssp -CCSEEEESC------CSSHHHH---HHHHHHHTSSSCCSEEEEEESCT
T ss_pred CCCCEEEEEC------CCCcHHH---HHHHHHHhcCCCCcEEEEEecCh
Confidence 3467777774 5677776 6889999999 9999887654
No 361
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=35.76 E-value=45 Score=28.64 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=26.1
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 4 ~k~~lVTG------as~gIG~---~ia~~l~~~G~~V~~~~~~ 37 (246)
T 3osu_A 4 TKSALVTG------ASRGIGR---SIALQLAEEGYNVAVNYAG 37 (246)
T ss_dssp SCEEEETT------CSSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 36677774 5677776 6889999999999887654
No 362
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=35.75 E-value=39 Score=30.16 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=27.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||++++...... ...+ .....+++++.+.||+|.++...+
T Consensus 2 m~i~il~~~~~~~-~~~~--~s~~~l~~a~~~~G~~v~~~d~~~ 42 (316)
T 1gsa_A 2 IKLGIVMDPIANI-NIKK--DSSFAMLLEAQRRGYELHYMEMGD 42 (316)
T ss_dssp CEEEEECSCGGGC-CTTT--CHHHHHHHHHHHTTCEEEEECGGG
T ss_pred ceEEEEeCcHHhC-CcCC--ChHHHHHHHHHHCCCEEEEEchhH
Confidence 6999998642111 1112 223569999999999999998753
No 363
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=35.59 E-value=45 Score=29.36 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=24.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+|+.. |.+.. .++..|.+.||+|+++....
T Consensus 1 m~i~iiG~--------G~~G~---~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGC--------GALGQ---LWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp CEEEEECC--------SHHHH---HHHHHHHHTTCEEEEECSSC
T ss_pred CeEEEECc--------CHHHH---HHHHHHHhCCCCEEEEEcCc
Confidence 78998864 33333 57888899999999986653
No 364
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=35.56 E-value=35 Score=30.87 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC--CeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG--HELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~ 119 (488)
..|||++.. ..|+.+. .+++.|.++| ++|.++...
T Consensus 2 ~~m~vlVTG-------atG~iG~---~l~~~L~~~g~~~~V~~~~r~ 38 (336)
T 2hun_A 2 HSMKLLVTG-------GMGFIGS---NFIRYILEKHPDWEVINIDKL 38 (336)
T ss_dssp -CCEEEEET-------TTSHHHH---HHHHHHHHHCTTCEEEEEECC
T ss_pred CCCeEEEEC-------CCchHHH---HHHHHHHHhCCCCEEEEEecC
Confidence 457876654 4577766 5778888886 888888654
No 365
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=35.55 E-value=23 Score=29.18 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHH-HHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERH-ALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~-~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+|||++|..+ +..+|.... +..+++.+. .|++|.++....
T Consensus 5 ~~Mkilii~gS----~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~ 46 (193)
T 1rtt_A 5 DDIKVLGISGS----LRSGSYNSAALQEAIGLVP-PGMSIELADISG 46 (193)
T ss_dssp --CEEEEEESC----CSTTCHHHHHHHHHHTTCC-TTCEEEECCCTT
T ss_pred CCceEEEEECC----CCCCChHHHHHHHHHHhcc-CCCeEEEEeHHH
Confidence 35899999863 233454443 333333344 588888876543
No 366
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=35.52 E-value=59 Score=26.18 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=26.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+|||++-++ .+|.+. -..+.+.|.+.||+|.=+...
T Consensus 19 ~~MkIaIgsD-------haG~~l-K~~i~~~L~~~G~eV~D~G~~ 55 (169)
T 3ph3_A 19 SHMKIGIGSD-------HGGYNL-KREIADFLKKRGYEVIDFGTH 55 (169)
T ss_dssp --CEEEEEEC-------GGGHHH-HHHHHHHHHHTTCEEEECCCC
T ss_pred CCCEEEEEeC-------chHHHH-HHHHHHHHHHCCCEEEEcCCC
Confidence 6799998885 466653 346888999999999866554
No 367
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=35.40 E-value=89 Score=29.80 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=29.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++++++. ....|=.+.+..|+..|+++|+.|.+++.+.
T Consensus 101 ~vIlivG-----~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVG-----IQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp EEEEEEC-----CTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred eEEEEEC-----cCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5555553 2456778889999999999999999998764
No 368
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=35.39 E-value=1.5e+02 Score=22.58 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=60.3
Q ss_pred CeEEEEEeCCCch-hHHhh-hC--CcEEEeC-ccCHHHHHHHHHh--cCEEEeCCCCCCCCChHHHHHHHc---CCcEEE
Q 011355 328 STVFLVAGDGPWG-ARYRD-LG--TNVIVLG-PLDQTRLAMFYNA--IDIFVNPTLRAQGLDHTVLEAMLS---GKPLMA 397 (488)
Q Consensus 328 ~~~l~ivG~g~~~-~~~~~-l~--~~V~~~g-~v~~~~l~~~~~~--adv~v~ps~~~eg~~~~~lEAma~---G~PVI~ 397 (488)
..+++|+.+.+.. +.++. +. ......+ .-+.++....+.. .|+++.-..-++.-|..+++.+.. ++|||.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 4566777765432 22222 22 2333332 2234566666554 577666332223345666666543 577776
Q ss_pred e-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 398 T-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 398 ~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
. ...... .+.+..|..+++..| +.+++.+.|..++..
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 85 FTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred EECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 4 332211 134456788999999 999999999998875
No 369
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=35.39 E-value=52 Score=29.68 Aligned_cols=35 Identities=11% Similarity=-0.023 Sum_probs=25.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
..|+|++.. ..|+.+. .+++.|.++||+|.++...
T Consensus 10 ~~~~vlVTG-------atG~iG~---~l~~~L~~~g~~V~~~~r~ 44 (342)
T 1y1p_A 10 EGSLVLVTG-------ANGFVAS---HVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp TTCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEEC-------CccHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 446766654 4577766 5788899999999988754
No 370
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=35.39 E-value=46 Score=28.71 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=25.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 19 ~k~vlVTG------as~gIG~---~~a~~l~~~G~~V~~~~r~ 52 (249)
T 1o5i_A 19 DKGVLVLA------ASRGIGR---AVADVLSQEGAEVTICARN 52 (249)
T ss_dssp TCEEEEES------CSSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEcCC
Confidence 35566664 5678776 5788999999999888764
No 371
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=35.38 E-value=18 Score=34.91 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=63.4
Q ss_pred ccChHHHHHHHHHhHhhccCCCCCeEEEEEeCCCchhHHh--------------------h----hCCcEEEeCccCHHH
Q 011355 305 DKGHPLMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYR--------------------D----LGTNVIVLGPLDQTR 360 (488)
Q Consensus 305 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~g~~~~~~~--------------------~----l~~~V~~~g~v~~~~ 360 (488)
.++++.+.+.+....+ +.-+..|+|.|.-...+. . +.+-+.+.|--.+.+
T Consensus 218 ~~~i~~~~~~~g~~~~------~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~ 291 (461)
T 4g65_A 218 SNHIRSVMSELQRLEK------PYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQE 291 (461)
T ss_dssp TTTHHHHHHHTTGGGS------CCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHH
T ss_pred cchHHHHHHhhccccc------cccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEEeccccchh
Confidence 4556666665543322 334678888764322111 1 334455667654455
Q ss_pred HHH--HHHhcCEEEeCCCCCCCCChHHHHHHHcCCcEEEeCCCCcc-cceeecCCceeEeCCCHHHHHHHHHHHHh
Q 011355 361 LAM--FYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIV-GSVIVGTDMGYLFSPQVESVKKALYGIWA 433 (488)
Q Consensus 361 l~~--~~~~adv~v~ps~~~eg~~~~~lEAma~G~PVI~~~~~~~~-~e~v~~~~~g~l~~~d~~~la~~i~~ll~ 433 (488)
+.. =+..+|+++..+...|.-=+..+-|-.+|.+=+.+...... .+++...+....+.| ....+..|.+.+.
T Consensus 292 ~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~visp-~~~~a~~I~~~i~ 366 (461)
T 4g65_A 292 LLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISP-QQATISALLTHVR 366 (461)
T ss_dssp HHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEECH-HHHHHHHHHHHHH
T ss_pred hHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeCH-HHHHHHHHHHHhh
Confidence 433 36789999987654343224556677788876666443311 134444444445542 2234455555443
No 372
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=35.31 E-value=39 Score=29.71 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=27.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+|+++|+. ..||... .+++.|.++|++|.++....
T Consensus 4 ~~k~vlVTG------as~gIG~---~~a~~l~~~G~~V~~~~r~~ 39 (281)
T 3m1a_A 4 SAKVWLVTG------ASSGFGR---AIAEAAVAAGDTVIGTARRT 39 (281)
T ss_dssp CCCEEEETT------TTSHHHH---HHHHHHHHTTCEEEEEESSG
T ss_pred CCcEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEeCCH
Confidence 356777774 5677776 68889999999998887653
No 373
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=35.31 E-value=39 Score=30.07 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=27.2
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+.|+++|+. ..||++. .+++.|.++|++|.++....
T Consensus 11 ~~k~vlITG------as~GIG~---~~a~~L~~~G~~V~~~~r~~ 46 (311)
T 3o26_A 11 KRRCAVVTG------GNKGIGF---EICKQLSSNGIMVVLTCRDV 46 (311)
T ss_dssp -CCEEEESS------CSSHHHH---HHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEec------CCchHHH---HHHHHHHHCCCEEEEEeCCH
Confidence 346777875 5678776 68899999999998887653
No 374
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=35.30 E-value=45 Score=28.96 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=25.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
.|+++|+. ..||..+ .+++.|.++|++|.+...
T Consensus 4 ~k~vlVTG------as~gIG~---aia~~l~~~G~~vv~~~~ 36 (258)
T 3oid_A 4 NKCALVTG------SSRGVGK---AAAIRLAENGYNIVINYA 36 (258)
T ss_dssp CCEEEESS------CSSHHHH---HHHHHHHHTTCEEEEEES
T ss_pred CCEEEEec------CCchHHH---HHHHHHHHCCCEEEEEcC
Confidence 46777774 5678776 688999999999998643
No 375
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=35.20 E-value=23 Score=33.18 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=30.7
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.|.+|||+++....-. ...=.-.....++++|.+.||+|..+.....
T Consensus 19 ~m~~~~v~vl~GG~S~--E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~ 65 (386)
T 3e5n_A 19 HMRKIRVGLIFGGKSA--EHEVSLQSARNILDALDPQRFEPVLIGIDKQ 65 (386)
T ss_dssp --CCEEEEEEEECSST--THHHHHHHHHHHHHHSCTTTEEEEEEEECTT
T ss_pred hcCCceEEEEeccCCC--CchhHHHHHHHHHHHhCccCCEEEEEEECCC
Confidence 4578999999863211 1111114556788999999999999987643
No 376
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=35.00 E-value=36 Score=30.47 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=23.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++. ..|+.+. .+++.|.++||+|.++...
T Consensus 3 ~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~ 35 (315)
T 2ydy_A 3 RRVLVTG-------ATGLLGR---AVHKEFQQNNWHAVGCGFR 35 (315)
T ss_dssp CEEEEET-------TTSHHHH---HHHHHHHTTTCEEEEEC--
T ss_pred CeEEEEC-------CCcHHHH---HHHHHHHhCCCeEEEEccC
Confidence 5666654 4577666 5788899999999998754
No 377
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=34.97 E-value=1.8e+02 Score=23.56 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=46.8
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-CCCCc--ccceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT-RLASI--VGSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~-~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+. ..|+++.=-.-++.-|..+++.+. .++|||.. ..... ..+.+..|..+++..| +.+++..+|
T Consensus 37 ~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i 116 (208)
T 1yio_A 37 ASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAI 116 (208)
T ss_dssp HHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHH
Confidence 444444443 246665522223344667777664 36787764 32221 1134456778999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 117 ~~~~~~ 122 (208)
T 1yio_A 117 EQGLQL 122 (208)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998865
No 378
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=34.95 E-value=40 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=23.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
|||++.. ..|+.++ .+++.|.++||+|.++..
T Consensus 1 m~vlVTG-------atG~iG~---~l~~~L~~~G~~V~~~~~ 32 (338)
T 1udb_A 1 MRVLVTG-------GSGYIGS---HTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEEC
T ss_pred CEEEEEC-------CCCHHHH---HHHHHHHHCCCEEEEEec
Confidence 6766554 4577766 578889999999998764
No 379
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=34.94 E-value=43 Score=29.13 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=25.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..||.+. .+++.|.++|++|.++...
T Consensus 30 k~vlITG------as~gIG~---~la~~l~~~G~~V~~~~r~ 62 (262)
T 3rkr_A 30 QVAVVTG------ASRGIGA---AIARKLGSLGARVVLTARD 62 (262)
T ss_dssp CEEEESS------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEECC
Confidence 5677774 5677776 6789999999998887654
No 380
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=34.92 E-value=1.8e+02 Score=24.52 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=31.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.++||+|+-. +..|-.+..+..+++.| +.|+++.++.....
T Consensus 39 ~~~kv~IlYg-----S~tGnte~~A~~La~~l-~~g~~v~v~~l~~~ 79 (219)
T 3hr4_A 39 SRVRVTILFA-----TETGKSEALAWDLGALF-SCAFNPKVVCMDKY 79 (219)
T ss_dssp TSCEEEEEEE-----CSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGC
T ss_pred cCCcEEEEEE-----CCchHHHHHHHHHHHHH-HcCCCeEEEEcccC
Confidence 4467777753 37788999999999988 57999999877643
No 381
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=34.83 E-value=53 Score=28.85 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..+|+.+ .+++.|.++|++|.++...
T Consensus 11 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 11 KVVLVTG------GARGQGR---SHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEECC
T ss_pred CEEEEeC------CCChHHH---HHHHHHHHCCCeEEEEccc
Confidence 6777775 5677776 6889999999999988765
No 382
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=34.81 E-value=34 Score=30.86 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|||+++.. ...|+ .++..|.+.|++|+++....
T Consensus 2 ~mkI~IiGa-----GaiG~------~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 2 SLRIAIVGA-----GALGL------YYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp --CEEEECC-----STTHH------HHHHHHHHTSCCEEEECSTT
T ss_pred CCEEEEECc-----CHHHH------HHHHHHHHCCCeEEEEEcCc
Confidence 489999975 13333 36788888999999998753
No 383
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=34.78 E-value=28 Score=30.21 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+|++++. ..+.||-. +-.++.|.+.|++|.|+...
T Consensus 60 ~v~VlcG----~GNNGGDG---lv~AR~L~~~G~~V~v~~~~ 94 (246)
T 1jzt_A 60 HVFVIAG----PGNNGGDG---LVCARHLKLFGYNPVVFYPK 94 (246)
T ss_dssp EEEEEEC----SSHHHHHH---HHHHHHHHHTTCCEEEECCC
T ss_pred eEEEEEC----CCCCHHHH---HHHHHHHHHCCCeEEEEEcC
Confidence 8999986 23555554 35889999999999998754
No 384
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=34.69 E-value=33 Score=29.29 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=24.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFT 117 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 117 (488)
||.++|+. ..||..+ .+++.|.++|++|.++.
T Consensus 1 ~k~vlITG------asggiG~---~~a~~l~~~G~~v~~~~ 32 (245)
T 2ph3_A 1 MRKALITG------ASRGIGR---AIALRLAEDGFALAIHY 32 (245)
T ss_dssp CCEEEETT------TTSHHHH---HHHHHHHTTTCEEEEEE
T ss_pred CCEEEEeC------CCchHHH---HHHHHHHHCCCEEEEEc
Confidence 45566664 5677776 68899999999999873
No 385
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=34.68 E-value=67 Score=23.61 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=24.2
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHH-HHHHHHHHCCCe-EEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHAL-TLHLALAKRGHE-LHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~-~l~~~L~~~G~~-V~v~~~~ 119 (488)
++||+++|. ..-|.+..+. .+-+.+.+.|.+ +.+-+..
T Consensus 18 ~~kIlvvC~------sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~ 57 (110)
T 3czc_A 18 MVKVLTACG------NGMGSSMVIKMKVENALRQLGVSDIESASCS 57 (110)
T ss_dssp CEEEEEECC------CCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CcEEEEECC------CcHHHHHHHHHHHHHHHHHcCCCeEEEEEee
Confidence 468998885 2224455555 666778888888 6655443
No 386
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=34.68 E-value=67 Score=23.60 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=25.7
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHH---HHHHHHHHCCCeEEEEecCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHAL---TLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~---~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.|||+.++. -+.|+....+ .|-++-.++||++.|=+.+..
T Consensus 2 ~mkivaVta------CptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~ 44 (106)
T 2m1z_A 2 KRKIIAVTA------CATGVAHTYMAAQALKKGAKKMGNLIKVETQGAT 44 (106)
T ss_dssp CCEEEEEEE------CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CccEEEEEE------CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 489888874 2345443322 444555567999999988753
No 387
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=34.59 E-value=52 Score=28.71 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=26.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|.++|+. ..||.++ .+++.|.++|++|.++...
T Consensus 29 ~k~vlITG------as~gIG~---~la~~l~~~G~~V~~~~r~ 62 (271)
T 4iin_A 29 GKNVLITG------ASKGIGA---EIAKTLASMGLKVWINYRS 62 (271)
T ss_dssp CCEEEETT------CSSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 36677774 5677776 6889999999999988764
No 388
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=34.59 E-value=53 Score=28.04 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=26.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|+++|+. ..||... .+++.|.++|++|.++...
T Consensus 14 ~k~vlITG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 47 (247)
T 3i1j_A 14 GRVILVTG------AARGIGA---AAARAYAAHGASVVLLGRT 47 (247)
T ss_dssp TCEEEESS------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeC------CCChHHH---HHHHHHHHCCCEEEEEecC
Confidence 46777774 5677776 6889999999999887654
No 389
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=34.42 E-value=41 Score=27.86 Aligned_cols=35 Identities=9% Similarity=-0.063 Sum_probs=25.5
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC--eEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH--ELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~ 120 (488)
.|||+++. ..|+... .+++.|.++|+ +|.+++...
T Consensus 5 ~~~vlVtG-------atG~iG~---~l~~~l~~~g~~~~V~~~~r~~ 41 (215)
T 2a35_A 5 PKRVLLAG-------ATGLTGE---HLLDRILSEPTLAKVIAPARKA 41 (215)
T ss_dssp CCEEEEEC-------TTSHHHH---HHHHHHHHCTTCCEEECCBSSC
T ss_pred CceEEEEC-------CCcHHHH---HHHHHHHhCCCCCeEEEEeCCC
Confidence 46777665 3566665 67888999998 888877654
No 390
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=34.36 E-value=32 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=25.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.+|||++.. ..|+.+. .+++.|.++|++|.++...
T Consensus 11 ~~~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~ 45 (292)
T 1vl0_A 11 HHMKILITG-------ANGQLGR---EIQKQLKGKNVEVIPTDVQ 45 (292)
T ss_dssp -CEEEEEES-------TTSHHHH---HHHHHHTTSSEEEEEECTT
T ss_pred ccceEEEEC-------CCChHHH---HHHHHHHhCCCeEEeccCc
Confidence 467887775 3466665 5788899999999988654
No 391
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=34.20 E-value=54 Score=29.94 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=31.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.++|++++. ....|=.+.+.+++..|++.|..|.++..+.
T Consensus 15 ~~~i~~~sg-----kGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 15 SLRWIFVGG-----KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp TCCEEEEEC-----STTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred CeEEEEEeC-----CCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 467887774 2445566778899999999999999999874
No 392
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=33.83 E-value=44 Score=30.02 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=24.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|||+++.. |.... .++..|. .|++|+++....
T Consensus 2 ~mkI~IiGa--------Ga~G~---~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 2 SLKIGIIGG--------GSVGL---LCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CCEEEEECC--------SHHHH---HHHHHHH-TTSEEEEECSCH
T ss_pred CCEEEEECC--------CHHHH---HHHHHHh-cCCceEEEECCH
Confidence 589999974 44444 4677778 899999987653
No 393
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=33.68 E-value=62 Score=27.12 Aligned_cols=41 Identities=2% Similarity=-0.028 Sum_probs=28.6
Q ss_pred ceEEEEEecCCCCCCC--CCcHHH-HHHHHHHHHHHC--CCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSH--AGGLER-HALTLHLALAKR--GHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~--~gG~~~-~~~~l~~~L~~~--G~~V~v~~~~~ 120 (488)
.|||++|..+ +. .+|... .+..+++.+.+. |++|.++-...
T Consensus 4 M~kiLiI~gS----pr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~ 49 (211)
T 3p0r_A 4 MTKVLFVKAN----NRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYK 49 (211)
T ss_dssp CCEEEEEECC----CSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGG
T ss_pred cCEEEEEEeC----CCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4799999863 23 455544 445667777776 89999988764
No 394
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=33.65 E-value=50 Score=28.27 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=24.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 3 k~vlItG------asggiG~---~~a~~l~~~G~~V~~~~r~ 35 (250)
T 2cfc_A 3 RVAIVTG------ASSGNGL---AIATRFLARGDRVAALDLS 35 (250)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeC------CCchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5566664 4577776 6788999999999988754
No 395
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=33.64 E-value=40 Score=30.29 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=25.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+|+++. ..|+.+. .+++.|.+.||+|.+++...
T Consensus 4 ~~~ilVtG-------atG~iG~---~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYG-------GTGYIGK---FMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEET-------TTSTTHH---HHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEEc-------CCchhHH---HHHHHHHhCCCcEEEEECCc
Confidence 35676665 3466655 57888888999999998764
No 396
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=33.59 E-value=36 Score=28.63 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=27.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAK-RGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~ 121 (488)
+++||++... ...| .....++++.|.+ .|++|.++.....
T Consensus 18 ~~k~IllgvT------Gsia-a~k~~~lv~~L~~~~g~~V~vv~T~~A 58 (206)
T 1qzu_A 18 RKFHVLVGVT------GSVA-ALKLPLLVSKLLDIPGLEVAVVTTERA 58 (206)
T ss_dssp SSEEEEEEEC------SSGG-GGTHHHHHHHHC---CEEEEEEECTGG
T ss_pred CCCEEEEEEe------ChHH-HHHHHHHHHHHhcccCCEEEEEECHhH
Confidence 4568888775 1222 3345799999998 8999999987654
No 397
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=33.58 E-value=60 Score=27.59 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKR--GHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~ 120 (488)
.|+|+++. ..||..+ .+++.|.++ |++|.++....
T Consensus 4 ~~~ilVtG-------asG~iG~---~l~~~l~~~~~g~~V~~~~r~~ 40 (253)
T 1xq6_A 4 LPTVLVTG-------ASGRTGQ---IVYKKLKEGSDKFVAKGLVRSA 40 (253)
T ss_dssp CCEEEEES-------TTSHHHH---HHHHHHHHTTTTCEEEEEESCH
T ss_pred CCEEEEEc-------CCcHHHH---HHHHHHHhcCCCcEEEEEEcCC
Confidence 34555554 4577766 578888888 89999987653
No 398
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=33.58 E-value=43 Score=28.21 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=27.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+++||++... ...| ......+++.|.+.| +|.++.....
T Consensus 18 ~~k~IllgvT------Gsia-a~k~~~ll~~L~~~g-~V~vv~T~~A 56 (209)
T 1mvl_A 18 RKPRVLLAAS------GSVA-AIKFGNLCHCFTEWA-EVRAVVTKSS 56 (209)
T ss_dssp -CCEEEEEEC------SSGG-GGGHHHHHHHHHTTS-EEEEEECTGG
T ss_pred CCCEEEEEEe------CcHH-HHHHHHHHHHHhcCC-CEEEEEcchH
Confidence 4568888875 1222 334779999999999 9999987654
No 399
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=33.53 E-value=1.3e+02 Score=21.44 Aligned_cols=77 Identities=9% Similarity=0.029 Sum_probs=46.2
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH--cCCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML--SGKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma--~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
.++....+. ..|+++.-..-++.-|..+++.+. ...|+|........+ +.+..|..+++..| +.+++.+.+.
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~ 113 (120)
T 2a9o_A 34 GREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVK 113 (120)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHH
Confidence 444444443 467766532222333556666553 567877643222111 23456788999999 9999999998
Q ss_pred HHHhc
Q 011355 430 GIWAD 434 (488)
Q Consensus 430 ~ll~~ 434 (488)
.++..
T Consensus 114 ~~~~~ 118 (120)
T 2a9o_A 114 ALLRR 118 (120)
T ss_dssp HHHHC
T ss_pred HHHcc
Confidence 87754
No 400
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=33.27 E-value=58 Score=28.55 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=25.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 23 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 55 (277)
T 2rhc_B 23 EVALVTG------ATSGIGL---EIARRLGKEGLRVFVCARG 55 (277)
T ss_dssp CEEEEET------CSSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5677774 5678776 5788999999999988654
No 401
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=33.16 E-value=40 Score=26.88 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=24.3
Q ss_pred HHHHhcCEEEeCCCCCCCCChHHHH---HHHcCCcEEEeC
Q 011355 363 MFYNAIDIFVNPTLRAQGLDHTVLE---AMLSGKPLMATR 399 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg~~~~~lE---Ama~G~PVI~~~ 399 (488)
..+..||++|.----.+.=+.+..| |.+.|+|||+-.
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEE
Confidence 4578999986532101122346666 899999999864
No 402
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=32.97 E-value=85 Score=25.55 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=28.3
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+..|||+++.. .|-...-+....+.|...|++|.+++...
T Consensus 7 ~~~~~v~il~~-------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~ 46 (190)
T 2vrn_A 7 LTGKKIAILAA-------DGVEEIELTSPRAAIEAAGGTTELISLEP 46 (190)
T ss_dssp CTTCEEEEECC-------TTCBHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCEEEEEeC-------CCCCHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 35679999974 12223344567788889999999998764
No 403
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=32.96 E-value=1.5e+02 Score=21.88 Aligned_cols=77 Identities=6% Similarity=0.063 Sum_probs=47.7
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHHc---CCcEEEe-CCCCc--ccceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAMLS---GKPLMAT-RLASI--VGSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma~---G~PVI~~-~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+. ..|+++.-..-+..-|..+++.+.. .+|||.. ..... ..+.+..|..+++..| +.+++.+.|
T Consensus 38 ~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i 117 (133)
T 3b2n_A 38 GLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETI 117 (133)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 445555444 3688776332223335667776653 5777754 33321 1134556788999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 118 ~~~~~~ 123 (133)
T 3b2n_A 118 NKVNNG 123 (133)
T ss_dssp HHHHC-
T ss_pred HHHHcC
Confidence 988764
No 404
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=32.82 E-value=54 Score=29.73 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=24.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+|++.. ..|+.+. .+++.|.+.||+|.++...
T Consensus 3 ~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~ 35 (348)
T 1ek6_A 3 EKVLVTG-------GAGYIGS---HTVLELLEAGYLPVVIDNF 35 (348)
T ss_dssp SEEEEET-------TTSHHHH---HHHHHHHHTTCCEEEEECS
T ss_pred CEEEEEC-------CCCHHHH---HHHHHHHHCCCEEEEEecC
Confidence 5666554 3566665 5788898999999998754
No 405
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=32.71 E-value=50 Score=28.53 Aligned_cols=35 Identities=6% Similarity=-0.015 Sum_probs=26.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+++|+. ..+|.++ .+++.|.++|++|.++....
T Consensus 7 ~k~vlVTG------as~GIG~---aia~~l~~~G~~V~~~~r~~ 41 (252)
T 3h7a_A 7 NATVAVIG------AGDYIGA---EIAKKFAAEGFTVFAGRRNG 41 (252)
T ss_dssp SCEEEEEC------CSSHHHH---HHHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEEC------CCchHHH---HHHHHHHHCCCEEEEEeCCH
Confidence 36677774 5677776 68899999999998887643
No 406
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=32.70 E-value=35 Score=30.00 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+|++++. ..+.||-. +-.++.|...|++|.|+...
T Consensus 81 ~VlVlcG----~GNNGGDG---lv~AR~L~~~G~~V~V~~~~ 115 (265)
T 2o8n_A 81 TVLVICG----PGNNGGDG---LVCARHLKLFGYQPTIYYPK 115 (265)
T ss_dssp EEEEEEC----SSHHHHHH---HHHHHHHHHTTCEEEEECCS
T ss_pred eEEEEEC----CCCCHHHH---HHHHHHHHHCCCcEEEEEeC
Confidence 8999986 33555554 35889999999999998654
No 407
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=32.62 E-value=58 Score=26.88 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeE
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHEL 113 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V 113 (488)
.+|+|++++..-. ...-....+.++.+.|+++|+.|
T Consensus 12 ~~~~I~Vfg~s~~---~~~~~~~~A~~lg~~la~~g~~l 47 (189)
T 3sbx_A 12 GRWTVAVYCAAAP---THPELLELAGAVGAAIAARGWTL 47 (189)
T ss_dssp -CCEEEEECCSSC---CCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeCCC---CChHHHHHHHHHHHHHHHCCCEE
Confidence 5689999986211 11222356789999999998753
No 408
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=32.61 E-value=54 Score=29.87 Aligned_cols=36 Identities=14% Similarity=-0.046 Sum_probs=25.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|+|+++. ..|+.+. .+++.|.+.|++|.++....
T Consensus 26 ~~~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 61 (352)
T 1sb8_A 26 QPKVWLITG-------VAGFIGS---NLLETLLKLDQKVVGLDNFA 61 (352)
T ss_dssp SCCEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEECCS
T ss_pred cCCeEEEEC-------CCcHHHH---HHHHHHHHCCCEEEEEeCCC
Confidence 345666554 4577666 57888999999999987653
No 409
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=32.58 E-value=1.6e+02 Score=22.09 Aligned_cols=77 Identities=8% Similarity=0.061 Sum_probs=44.8
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEeC-CCC--cccceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMATR-LAS--IVGSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~~-~~~--~~~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+. ..|+++.-..-+..-|..+++.+. .++|+|... ... ...+.+..|..+++..| +.+++.++|
T Consensus 38 ~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 117 (141)
T 3cu5_A 38 GINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDAL 117 (141)
T ss_dssp HHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHH
Confidence 445555554 357776532222334566776664 467877642 221 11144566788999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 118 ~~~~~~ 123 (141)
T 3cu5_A 118 KQSIQT 123 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 410
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=32.32 E-value=49 Score=28.06 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..||..+ .+++.|.++|++|.++....
T Consensus 10 asggiG~---~la~~l~~~G~~V~~~~r~~ 36 (242)
T 1uay_A 10 GASGLGR---AAALALKARGYRVVVLDLRR 36 (242)
T ss_dssp TTSHHHH---HHHHHHHHHTCEEEEEESSC
T ss_pred CCChHHH---HHHHHHHHCCCEEEEEccCc
Confidence 4577776 67888999999999987654
No 411
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=32.19 E-value=60 Score=25.41 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=25.7
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|+|+++.. |..+. .+++.|.+.|++|.++....
T Consensus 18 ~~~~v~IiG~--------G~iG~---~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGC--------GRLGS---LIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECC--------SHHHH---HHHHHHHHTTCEEEEEESCG
T ss_pred CCCcEEEECC--------CHHHH---HHHHHHHhCCCeEEEEECCH
Confidence 4578888853 44443 57888889999999997654
No 412
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=32.05 E-value=86 Score=23.04 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=24.0
Q ss_pred CCCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Q 011355 73 PLKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIF 116 (488)
Q Consensus 73 ~~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 116 (488)
++.++||+++... ......+.+.|.+.|++|...
T Consensus 4 ~~~~~~ilivdd~----------~~~~~~l~~~L~~~g~~v~~~ 37 (130)
T 3eod_A 4 PLVGKQILIVEDE----------QVFRSLLDSWFSSLGATTVLA 37 (130)
T ss_dssp TTTTCEEEEECSC----------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCeEEEEeCC----------HHHHHHHHHHHHhCCceEEEe
Confidence 4467899999862 334456777888889988753
No 413
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=31.80 E-value=1.9e+02 Score=23.96 Aligned_cols=77 Identities=9% Similarity=0.044 Sum_probs=47.5
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH--cCCcEEEeCCCCccc---ceeecCCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML--SGKPLMATRLASIVG---SVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma--~G~PVI~~~~~~~~~---e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
.++....+. ..|++++-..-++.-|..+++.+. ..+|+|........+ +.+..|..|++..| +.+++..+|.
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~ 116 (230)
T 2oqr_A 37 GPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIR 116 (230)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 445555444 357766532223334566666654 367887643222111 23456778999999 9999999999
Q ss_pred HHHhc
Q 011355 430 GIWAD 434 (488)
Q Consensus 430 ~ll~~ 434 (488)
.++..
T Consensus 117 ~~~~~ 121 (230)
T 2oqr_A 117 AVLRR 121 (230)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 98764
No 414
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=31.78 E-value=51 Score=26.49 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=24.6
Q ss_pred HHHHhcCEEEeCCCCCCCCChHHHH---HHHcCCcEEEe
Q 011355 363 MFYNAIDIFVNPTLRAQGLDHTVLE---AMLSGKPLMAT 398 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg~~~~~lE---Ama~G~PVI~~ 398 (488)
..+..||++|.--. +.-..+.+| |.+.|+|||+-
T Consensus 73 ~~i~~aD~vva~~~--~~d~Gt~~EiGyA~algKPVi~l 109 (165)
T 2khz_A 73 NWLQQADVVVAEVT--QPSLGVGYELGRAVALGKPILCL 109 (165)
T ss_dssp HHHHHCSEEEEECS--SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHhCCEEEEECC--CCCCCHHHHHHHHHHCCCEEEEE
Confidence 77999999776221 222446677 78999999985
No 415
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=31.76 E-value=1.5e+02 Score=23.61 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=38.4
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCC---eEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhHH
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGH---ELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSI 150 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~---~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (488)
+..+||+|+...|-. -=.+.....-.+.|.+.|. +++++... +.+....
T Consensus 8 ~~~~ri~IV~arfn~----~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VP------------------------GafEiP~ 59 (158)
T 1di0_A 8 KTSFKIAFIQARWHA----DIVDEARKSFVAELAAKTGGSVEVEIFDVP------------------------GAYEIPL 59 (158)
T ss_dssp -CCEEEEEEEECTTH----HHHHHHHHHHHHHHHHHHTTSEEEEEEEES------------------------SGGGHHH
T ss_pred CCCCEEEEEEEeCcH----HHHHHHHHHHHHHHHHcCCCccceEEEECC------------------------cHHHHHH
Confidence 346899999987632 1112233334466666664 35555433 5566666
Q ss_pred HHHHHHHHhcCCCCCcEEEeC
Q 011355 151 VWQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 151 ~~~~~~~~~~~~~~~Dvv~~~ 171 (488)
..+.+.... ++|.|++-
T Consensus 60 aa~~la~~~----~yDavIaL 76 (158)
T 1di0_A 60 HAKTLARTG----RYAAIVGA 76 (158)
T ss_dssp HHHHHHHTS----CCSEEEEE
T ss_pred HHHHHHhcC----CCCEEEEe
Confidence 666655432 89999874
No 416
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=31.58 E-value=1.5e+02 Score=26.13 Aligned_cols=107 Identities=9% Similarity=0.027 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHc-CCcEEEeCCCCcccce-e---e-------c-----CCceeEeCC-
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLS-GKPLMATRLASIVGSV-I---V-------G-----TDMGYLFSP- 419 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~-G~PVI~~~~~~~~~e~-v---~-------~-----~~~g~l~~~- 419 (488)
..++ .-++.||++|.-...-|++--.+++++.. ++++|.... ++. -+ . . + ..--++.+|
T Consensus 50 p~d~-~~l~~Adlvv~~G~~lE~w~~~~~~~~~~~~~~~v~~~~-~i~-~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~ 126 (284)
T 3cx3_A 50 ANDI-AAIYDADVFVYHSHTLESWAGSLDPNLKKSKVKVLEASE-GMT-LERVPGLEDVEAGDGVDEKTLYDPHTWLDPE 126 (284)
T ss_dssp HHHH-HHHHHSSEEEESCTTTSCTTTTCCTTTTTCCCEEEETTT-TCC-CCBCCC-------------CCBCCCGGGSHH
T ss_pred HHHH-HHHHhCCEEEEcCCCcHhHHHHHHHhcccCCCeEEEccC-Ccc-ccccCCcccccccccccCCCCCCCCcccCHH
Confidence 4454 66889999998554347776677776643 455554332 221 00 0 0 0 022356666
Q ss_pred CHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Q 011355 420 QVESVKKALYGIWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 420 d~~~la~~i~~ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 470 (488)
+...+++.|.+.+. -+|+......+|+.++..+ ++..-+.+.+.+..+
T Consensus 127 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~---L~~Ld~~~~~~l~~~ 175 (284)
T 3cx3_A 127 KAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKK---AQELTKKFQPKFEKA 175 (284)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHH---HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 67777777766554 2366666777777777644 555555555555543
No 417
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=31.45 E-value=59 Score=27.69 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=25.5
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 3 k~vlVTG------as~giG~---~~a~~l~~~G~~V~~~~r~~ 36 (239)
T 2ekp_A 3 RKALVTG------GSRGIGR---AIAEALVARGYRVAIASRNP 36 (239)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEeC------CCcHHHH---HHHHHHHHCCCEEEEEeCCH
Confidence 4566664 5677776 68899999999999887653
No 418
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=31.29 E-value=41 Score=29.64 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=25.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~ 121 (488)
|||+++. ..|+.++ .+++.|.+. |++|.+++....
T Consensus 1 M~ilVtG-------atG~iG~---~l~~~L~~~~g~~V~~~~R~~~ 36 (289)
T 3e48_A 1 MNIMLTG-------ATGHLGT---HITNQAIANHIDHFHIGVRNVE 36 (289)
T ss_dssp CCEEEET-------TTSHHHH---HHHHHHHHTTCTTEEEEESSGG
T ss_pred CEEEEEc-------CCchHHH---HHHHHHhhCCCCcEEEEECCHH
Confidence 7777765 4577776 456668887 999999987654
No 419
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=31.27 E-value=70 Score=27.49 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=28.3
Q ss_pred eEEEEEecC----CCCCCCCCcHH-HHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKK----WPHRSHAGGLE-RHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~----~p~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+||+++... |.......|.+ .-+......|.+.|++|++++...
T Consensus 4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g 52 (243)
T 1rw7_A 4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETG 52 (243)
T ss_dssp CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 489999862 22111123333 445566778889999999999875
No 420
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=31.22 E-value=30 Score=30.88 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=24.6
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|||+++.. |+.+. .++..|.+.|++|+++...
T Consensus 2 ~mkI~iiGa--------Ga~G~---~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIGP--------GAVGT---TIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp -CCEEEECC--------SHHHH---HHHHHHHHHCTTCEEEESS
T ss_pred CcEEEEECC--------CHHHH---HHHHHHHHCCCeEEEEEec
Confidence 489999974 44443 4677888889999999876
No 421
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=31.18 E-value=1.6e+02 Score=21.72 Aligned_cols=77 Identities=8% Similarity=0.055 Sum_probs=45.3
Q ss_pred HHHHHHHHHh-cCEEEeCCCCCCCCChHHHHHHH--c-----CCc-EE-EeCCCCcc--cceeecCCceeEeCC-CHHHH
Q 011355 358 QTRLAMFYNA-IDIFVNPTLRAQGLDHTVLEAML--S-----GKP-LM-ATRLASIV--GSVIVGTDMGYLFSP-QVESV 424 (488)
Q Consensus 358 ~~~l~~~~~~-adv~v~ps~~~eg~~~~~lEAma--~-----G~P-VI-~~~~~~~~--~e~v~~~~~g~l~~~-d~~~l 424 (488)
.++....+.. .|++++-..-+..-|..+++.+. . ..| +| .|...... .+.+..|-.+++..| +.+++
T Consensus 40 ~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L 119 (136)
T 1dcf_A 40 NEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNI 119 (136)
T ss_dssp HHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHH
T ss_pred HHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHH
Confidence 4444444432 27776532222333566677664 1 234 54 45444321 123456778999999 99999
Q ss_pred HHHHHHHHhc
Q 011355 425 KKALYGIWAD 434 (488)
Q Consensus 425 a~~i~~ll~~ 434 (488)
.+.+..++..
T Consensus 120 ~~~l~~~~~~ 129 (136)
T 1dcf_A 120 RDVLSDLLEP 129 (136)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhch
Confidence 9999988764
No 422
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=31.18 E-value=52 Score=29.56 Aligned_cols=35 Identities=11% Similarity=0.376 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|||+||.. |-+. ..++..|.+.||+|.++....
T Consensus 20 ~m~~I~iIG~--------G~mG---~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 20 HMMEVGFLGL--------GIMG---KAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp CSCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSSG
T ss_pred cCCEEEEECc--------cHHH---HHHHHHHHHCCCeEEEEeCCH
Confidence 4589999974 3332 368889999999999886543
No 423
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=31.16 E-value=30 Score=32.44 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=25.8
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+++++|+||.. ..+|. .++..|+++|++|+|+-...
T Consensus 21 ~~~~dV~IVGa------G~aGl-----~~A~~La~~G~~V~v~E~~~ 56 (407)
T 3rp8_A 21 QGHMKAIVIGA------GIGGL-----SAAVALKQSGIDCDVYEAVK 56 (407)
T ss_dssp --CCEEEEECC------SHHHH-----HHHHHHHHTTCEEEEEESSS
T ss_pred CCCCEEEEECC------CHHHH-----HHHHHHHhCCCCEEEEeCCC
Confidence 35689999974 33443 67888999999999997653
No 424
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=31.13 E-value=1.4e+02 Score=30.17 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=22.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
|||+|+.+ ..+...-.++|.+.||+|..+.+.++.
T Consensus 1 ~ri~~~~s-----------~~~~~~~l~~l~~~~~~i~~v~t~~~~ 35 (660)
T 1z7e_A 1 MKTVVFAY-----------HDMGCLGIEALLAAGYEISAIFTHTDN 35 (660)
T ss_dssp CEEEEEEC-----------HHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred CEEEEEEe-----------CHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 78988875 222234456777779998877766533
No 425
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=31.06 E-value=72 Score=26.66 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEE
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIF 116 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~ 116 (488)
...|=...+.+|+.+|+++|+.|.++
T Consensus 11 gGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 44566678899999999999999986
No 426
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=31.02 E-value=1.3e+02 Score=28.33 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=25.5
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNC 123 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 123 (488)
+.-||++++.+- ....+.++.++.|++|++++......
T Consensus 4 ~~k~l~Il~~~~-----------~~~~i~~aa~~lG~~vv~v~~~~~~~ 41 (425)
T 3vot_A 4 RNKNLAIICQNK-----------HLPFIFEEAERLGLKVTFFYNSAEDF 41 (425)
T ss_dssp CCCEEEEECCCT-----------TCCHHHHHHHHTTCEEEEEEETTSCC
T ss_pred CCcEEEEECCCh-----------hHHHHHHHHHHCCCEEEEEECCCccc
Confidence 445788887421 11246788889999999998765443
No 427
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=31.01 E-value=1.7e+02 Score=24.74 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=29.3
Q ss_pred HHHHHHHhcCEEEeCCCC---------CCCCChHHHHHHHcCCcEEEeCCC
Q 011355 360 RLAMFYNAIDIFVNPTLR---------AQGLDHTVLEAMLSGKPLMATRLA 401 (488)
Q Consensus 360 ~l~~~~~~adv~v~ps~~---------~eg~~~~~lEAma~G~PVI~~~~~ 401 (488)
+..+.+..||.+++|.-. ..|+--.+-|+...|+|++.+-.|
T Consensus 72 d~~~~l~~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 72 DPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp CHHHHHHHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred cHHHHHhcCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 455778889999988521 124445677888899999988533
No 428
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=30.81 E-value=49 Score=29.58 Aligned_cols=34 Identities=6% Similarity=0.027 Sum_probs=25.0
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
++|||+||.. |-+. ..++..|.+.||+|.++...
T Consensus 6 ~~~~I~iIG~--------G~mG---~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 6 TDFHVGIVGL--------GSMG---MGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp -CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEECC--------CHHH---HHHHHHHHHCCCeEEEEECC
Confidence 5689999964 3333 26888899999999988654
No 429
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=30.78 E-value=80 Score=26.34 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=27.9
Q ss_pred eEEEEEecCCCCCCCC-CcHH-HHHHHHHHHHHHC--CCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHA-GGLE-RHALTLHLALAKR--GHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~-gG~~-~~~~~l~~~L~~~--G~~V~v~~~~~ 120 (488)
|||++|..+ +.. +|.. ..+..+++.+.+. |++|.++-...
T Consensus 2 mkiLii~gS----pr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~ 45 (212)
T 3r6w_A 2 SRILAVHAS----PRGERSQSRRLAEVFLAAYREAHPQARVARREVGR 45 (212)
T ss_dssp CCEEEEECC----SCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSS
T ss_pred CEEEEEEeC----CCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 799999863 122 3443 4555677788777 99999998765
No 430
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}
Probab=30.74 E-value=39 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.077 Sum_probs=23.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIF 116 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 116 (488)
+|+++|+. ..||..+ .+++.|.++|++|.++
T Consensus 1 ~k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~ 31 (244)
T 1zmo_A 1 MVIALVTH------ARHFAGP---AAVEALTQDGYTVVCH 31 (244)
T ss_dssp -CEEEESS------TTSTTHH---HHHHHHHHTTCEEEEC
T ss_pred CCEEEEEC------CCChHHH---HHHHHHHHCCCEEEEe
Confidence 35667764 5677776 5788999999999887
No 431
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=30.65 E-value=62 Score=29.03 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=24.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++. ..|+.+. .+++.|.++||+|.++....
T Consensus 2 ~~ilVtG-------atG~iG~---~l~~~L~~~g~~V~~~~r~~ 35 (330)
T 2c20_A 2 NSILICG-------GAGYIGS---HAVKKLVDEGLSVVVVDNLQ 35 (330)
T ss_dssp CEEEEET-------TTSHHHH---HHHHHHHHTTCEEEEEECCS
T ss_pred CEEEEEC-------CCcHHHH---HHHHHHHhCCCEEEEEeCCC
Confidence 4555553 3566665 67888999999999987643
No 432
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=30.59 E-value=56 Score=28.53 Aligned_cols=34 Identities=15% Similarity=0.401 Sum_probs=26.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+++|+. ..||+++ .+++.|.++|++|.++....
T Consensus 17 k~vlVTG------as~gIG~---aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 17 KLVVITG------ASSGIGE---AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CEEEEES------TTSHHHH---HHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEECCH
Confidence 6777774 5678776 68899999999999887653
No 433
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=30.57 E-value=63 Score=27.78 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=26.1
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+.|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 12 ~~k~vlITG------as~giG~---~ia~~l~~~G~~v~~~~~~ 46 (256)
T 3ezl_A 12 SQRIAYVTG------GMGGIGT---SICQRLHKDGFRVVAGCGP 46 (256)
T ss_dssp -CEEEEETT------TTSHHHH---HHHHHHHHTTEEEEEEECT
T ss_pred CCCEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 446777774 5677776 6889999999999887743
No 434
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=30.56 E-value=1.6e+02 Score=21.61 Aligned_cols=77 Identities=10% Similarity=-0.029 Sum_probs=47.4
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKAL 428 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i 428 (488)
.++....+. ..|+++.-..-+..-|..+++.+. ..+|+|.. ..+... .+.+..|..+++..| +.+++...+
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 115 (136)
T 1mvo_A 36 GEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARV 115 (136)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHH
Confidence 445555544 357766532222334566676664 35677653 322211 123456788999999 999999999
Q ss_pred HHHHhc
Q 011355 429 YGIWAD 434 (488)
Q Consensus 429 ~~ll~~ 434 (488)
..++..
T Consensus 116 ~~~~~~ 121 (136)
T 1mvo_A 116 KAILRR 121 (136)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998875
No 435
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=30.48 E-value=2.2e+02 Score=23.06 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=45.8
Q ss_pred HHHHHHHHH--hcCEEEeCCCCCCCCChHHHHHHHc--CCcEEEe-CCCCc--ccceeecCCceeEeCC-CHHHHHHHHH
Q 011355 358 QTRLAMFYN--AIDIFVNPTLRAQGLDHTVLEAMLS--GKPLMAT-RLASI--VGSVIVGTDMGYLFSP-QVESVKKALY 429 (488)
Q Consensus 358 ~~~l~~~~~--~adv~v~ps~~~eg~~~~~lEAma~--G~PVI~~-~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i~ 429 (488)
.++....+. ..|+++.-..-+..-|..+++.+.. ..|||.. ..... ..+.+..|..+++..| +.+++...|.
T Consensus 47 ~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~ 126 (205)
T 1s8n_A 47 GQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIE 126 (205)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Confidence 334444443 3577665322233345666766643 3466653 22221 1134556778999999 9999999999
Q ss_pred HHHhc
Q 011355 430 GIWAD 434 (488)
Q Consensus 430 ~ll~~ 434 (488)
.++..
T Consensus 127 ~~~~~ 131 (205)
T 1s8n_A 127 LAVSR 131 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 436
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=30.47 E-value=2.5e+02 Score=25.12 Aligned_cols=108 Identities=10% Similarity=-0.031 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChHHHHHHHc-CCcEEEeCCCCccc-cee---e------------cCCceeEeCC-
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLS-GKPLMATRLASIVG-SVI---V------------GTDMGYLFSP- 419 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~~lEAma~-G~PVI~~~~~~~~~-e~v---~------------~~~~g~l~~~- 419 (488)
..+ ..-++.||++|.-...-|+|--.+++++.. ++++|.... ++.- ..- . ...--++.+|
T Consensus 62 p~d-~~~l~~ADlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~ 139 (312)
T 2o1e_A 62 PKD-IANIQDADLFVYNSEYMETWVPSAEKSMGQGHAVFVNASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPV 139 (312)
T ss_dssp HHH-HHHHHHSSEEEESCTTTSTTHHHHHHTTCSSSCEEEETTT-TCCCCCC----------------CCCCCGGGGSHH
T ss_pred HHH-HHHHhcCCEEEEcCCChHhHHHHHHHhcccCCCeEEEecC-CcccccCcccccccccccccccCCCCCCCcccCHH
Confidence 344 456789999998654346776677776543 355554332 2210 000 0 0122356666
Q ss_pred CHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Q 011355 420 QVESVKKALYGIWA-DGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCI 470 (488)
Q Consensus 420 d~~~la~~i~~ll~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 470 (488)
+...+++.|.+.+. -+|+......+|+.++..+ ++.+-+.+.+.+..+
T Consensus 140 n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~---L~~Ld~~~~~~l~~~ 188 (312)
T 2o1e_A 140 LAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK---LQDLDKLYRTTAKKA 188 (312)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH---HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH---HHHHHHHHHHHhhcc
Confidence 67777777766654 1366666777777777644 455555555555443
No 437
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=30.39 E-value=53 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=25.0
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|||+++. ..|+.+. .+++.|.+.||+|.+++...
T Consensus 4 ~~~ilVtG-------atG~iG~---~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIG-------ATGYIGR---HVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEES-------TTSTTHH---HHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEc-------CCcHHHH---HHHHHHHhCCCCEEEEECCc
Confidence 35676665 3455555 57888999999999887754
No 438
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=30.35 E-value=87 Score=26.03 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=28.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.|++.+. ....|-.+.+.+|+.+|+++| .|.++-.+.
T Consensus 1 kvI~v~s~-----KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 1 MIITVASF-----KGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp CEEEEEES-----STTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred CEEEEEcC-----CCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 45666663 244566678899999999999 999987664
No 439
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=30.29 E-value=55 Score=25.77 Aligned_cols=34 Identities=24% Similarity=0.120 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
|||++-++ .+|.+.- ..+.+.|.+.||+|.=+.+
T Consensus 2 MkIaigsD-------haG~~lK-~~i~~~L~~~G~eV~D~G~ 35 (149)
T 2vvr_A 2 KKIAFGCD-------HVGFILK-HEIVAHLVERGVEVIDKGT 35 (149)
T ss_dssp CEEEEEEC-------TTGGGGH-HHHHHHHHHTTCEEEECCC
T ss_pred cEEEEEeC-------chhHHHH-HHHHHHHHHCCCEEEEeCC
Confidence 89988875 3565532 2588899999999887744
No 440
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=30.14 E-value=1.6e+02 Score=23.61 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=40.2
Q ss_pred hcCEEEeCCCCCCCCChHHHHHHH---cCCcEEEe-CCCCcc--cceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 367 AIDIFVNPTLRAQGLDHTVLEAML---SGKPLMAT-RLASIV--GSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 367 ~adv~v~ps~~~eg~~~~~lEAma---~G~PVI~~-~~~~~~--~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
..|+++.-..-++.-|. +.+.+. ..+|||.. ..+... .+.+..|-.+++..| +.+++...|..++..
T Consensus 52 ~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp CCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHH
Confidence 45776652211111133 555554 45787753 333211 133456788999999 999999999988765
No 441
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=36.24 E-value=11 Score=31.62 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHH-HHHHHHHHHCCCeEEEE-ecC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHA-LTLHLALAKRGHELHIF-TAS 119 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~-~~l~~~L~~~G~~V~v~-~~~ 119 (488)
.+|||++|..+ ...+|....+ ..+++.+.+ |++|.++ ...
T Consensus 5 ~~mkIliI~gS----~r~~s~t~~la~~~~~~~~~-g~~v~~i~dl~ 46 (199)
T 3s2y_A 5 SPLHFVTLLGS----LRKASFNAAVARALPEIAPE-GIAITPLGSIG 46 (199)
Confidence 56999999863 2334444433 334444444 8888888 543
No 442
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=30.03 E-value=1.6e+02 Score=26.58 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=30.6
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.+.++..++. ....|=.+.+..|+..++..|..|.++..+.
T Consensus 103 ~~~~vI~ivG-----~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVG-----VNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEES-----STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEEC-----CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456666663 1456777788999999999999999987654
No 443
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=29.96 E-value=68 Score=27.98 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 11 ~k~vlVTG------as~gIG~---aia~~l~~~G~~V~~~~r~~ 45 (271)
T 3tzq_B 11 NKVAIITG------ACGGIGL---ETSRVLARAGARVVLADLPE 45 (271)
T ss_dssp TCEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEcCCH
Confidence 36777774 5677776 68899999999998887653
No 444
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=29.84 E-value=59 Score=27.92 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=26.2
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 9 ~k~vlITG------as~giG~---~~a~~l~~~G~~V~~~~r~ 42 (253)
T 3qiv_A 9 NKVGIVTG------SGGGIGQ---AYAEALAREGAAVVVADIN 42 (253)
T ss_dssp TCEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEcCC
Confidence 36677774 5677776 6899999999999887654
No 445
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=29.78 E-value=65 Score=27.77 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=25.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 13 k~vlVTG------asggiG~---~~a~~l~~~G~~V~~~~r~~ 46 (265)
T 2o23_A 13 LVAVITG------GASGLGL---ATAERLVGQGASAVLLDLPN 46 (265)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEECTT
T ss_pred CEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEeCCc
Confidence 5566664 4677776 68899999999999887654
No 446
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=29.74 E-value=70 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=24.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHH-HHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHA-LTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~-~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||++|..+ +..+|....+ ..+++.+. .|++|.++...
T Consensus 3 ~kilii~gS----~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~ 41 (192)
T 3fvw_A 3 KRILFIVGS----FSEGSFNRQLAKKAETIIG-DRAQVSYLSYD 41 (192)
T ss_dssp CEEEEEESC----CSTTCHHHHHHHHHHHHHT-TSSEEEECCCS
T ss_pred CEEEEEEcC----CCCCCHHHHHHHHHHHhcC-CCCEEEEEeCc
Confidence 599999863 2445655443 34444554 68999988765
No 447
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=29.72 E-value=57 Score=27.12 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=23.5
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|||+++.. .|.+.. .+++.|.+.|++|.++...
T Consensus 1 m~i~iiGa-------~G~~G~---~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGG-------TGNLGK---GLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEETT-------TSHHHH---HHHHHHHTTTCEEEEEESS
T ss_pred CeEEEEcC-------CCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 68888751 244443 5788888899999887654
No 448
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=29.68 E-value=37 Score=28.21 Aligned_cols=38 Identities=8% Similarity=-0.095 Sum_probs=27.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..||++... ...|+ ....++++.|.+.|++|.++....
T Consensus 8 ~k~IllgvT------Gs~aa-~k~~~l~~~L~~~g~~V~vv~T~~ 45 (194)
T 1p3y_1 8 DKKLLIGIC------GSISS-VGISSYLLYFKSFFKEIRVVMTKT 45 (194)
T ss_dssp GCEEEEEEC------SCGGG-GGTHHHHHHHTTTSSEEEEEECHH
T ss_pred CCEEEEEEE------CHHHH-HHHHHHHHHHHHCCCEEEEEEchh
Confidence 347877765 22333 356789999999999999997753
No 449
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=29.52 E-value=67 Score=29.77 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=25.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHH-HCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALA-KRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~-~~G~~V~v~~~~~ 120 (488)
.|+|++.. ..|++.. .+++.|. +.|++|.++....
T Consensus 2 ~m~vlVTG-------atG~iG~---~l~~~L~~~~g~~V~~~~r~~ 37 (397)
T 1gy8_A 2 HMRVLVCG-------GAGYIGS---HFVRALLRDTNHSVVIVDSLV 37 (397)
T ss_dssp CCEEEEET-------TTSHHHH---HHHHHHHHHCCCEEEEEECCT
T ss_pred CCEEEEEC-------CCCHHHH---HHHHHHHHhCCCEEEEEecCC
Confidence 37776664 4577666 5788888 8999999987643
No 450
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=29.40 E-value=74 Score=29.09 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=26.2
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH--CCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAK--RGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~--~G~~V~v~~~~~ 120 (488)
..|+|++.. ..|+.+. .+++.|.+ .|++|.++....
T Consensus 9 ~~~~vlVTG-------atG~IG~---~l~~~L~~~~~g~~V~~~~r~~ 46 (362)
T 3sxp_A 9 ENQTILITG-------GAGFVGS---NLAFHFQENHPKAKVVVLDKFR 46 (362)
T ss_dssp TTCEEEEET-------TTSHHHH---HHHHHHHHHCTTSEEEEEECCC
T ss_pred CCCEEEEEC-------CCCHHHH---HHHHHHHhhCCCCeEEEEECCC
Confidence 345666654 4577766 57888888 899999998654
No 451
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=29.38 E-value=63 Score=29.63 Aligned_cols=35 Identities=23% Similarity=0.147 Sum_probs=25.6
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+|+++. ..|+..+ .+++.|.++||+|.+++...
T Consensus 5 ~~~ilVtG-------atG~iG~---~l~~~L~~~g~~V~~~~R~~ 39 (352)
T 1xgk_A 5 KKTIAVVG-------ATGRQGA---SLIRVAAAVGHHVRAQVHSL 39 (352)
T ss_dssp CCCEEEES-------TTSHHHH---HHHHHHHHTTCCEEEEESCS
T ss_pred CCEEEEEC-------CCCHHHH---HHHHHHHhCCCEEEEEECCC
Confidence 46776664 3566665 57788888999999988654
No 452
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.34 E-value=83 Score=23.01 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFT 117 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 117 (488)
.++||+++... ......+.+.|.+.|++|..+.
T Consensus 2 ~~~~ilivdd~----------~~~~~~l~~~L~~~g~~v~~~~ 34 (127)
T 3i42_A 2 SLQQALIVEDY----------QAAAETFKELLEMLGFQADYVM 34 (127)
T ss_dssp CCEEEEEECSC----------HHHHHHHHHHHHHTTEEEEEES
T ss_pred CcceEEEEcCC----------HHHHHHHHHHHHHcCCCEEEEC
Confidence 45789998752 3445567778888899776543
No 453
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=29.32 E-value=2.1e+02 Score=22.61 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=40.4
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC-C---eEEEEecCCCCCCCCCCCCceEEEecCCCCccCcchhH
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG-H---ELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQS 149 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~---~V~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 149 (488)
...+||+++...|-. -=.+.....-.+.|.+.| . +++++... +.+...
T Consensus 10 ~~~~ri~IV~arfn~----~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VP------------------------GafEiP 61 (156)
T 3nq4_A 10 APDARVAITIARFNQ----FINDSLLDGAVDALTRIGQVKDDNITVVWVP------------------------GAYELP 61 (156)
T ss_dssp CTTCCEEEEEESTTH----HHHHHHHHHHHHHHHHTTCCCTTSEEEEEES------------------------STTTHH
T ss_pred CCCCEEEEEEeeCcH----HHHHHHHHHHHHHHHHcCCCcccceEEEEcC------------------------cHHHHH
Confidence 356799999987632 112233444456777778 3 56655443 446666
Q ss_pred HHHHHHHHHhcCCCCCcEEEeC
Q 011355 150 IVWQQLQTQNSTGKPFDVIHTE 171 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~Dvv~~~ 171 (488)
...+.+.... ++|.|++-
T Consensus 62 ~aa~~la~~~----~yDavIaL 79 (156)
T 3nq4_A 62 LATEALAKSG----KYDAVVAL 79 (156)
T ss_dssp HHHHHHHHHC----SCSEEEEE
T ss_pred HHHHHHHhcC----CCCEEEEe
Confidence 6666665443 79999873
No 454
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=29.31 E-value=78 Score=27.21 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|+++|+. ..||... .+++.|.++|++|.++...
T Consensus 12 ~k~vlVTG------as~gIG~---aia~~l~~~G~~V~~~~r~ 45 (252)
T 3f1l_A 12 DRIILVTG------ASDGIGR---EAAMTYARYGATVILLGRN 45 (252)
T ss_dssp TCEEEEES------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeC------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 46777775 5677776 6889999999999887654
No 455
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=29.27 E-value=41 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=26.2
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
+.+|||+|+.. |.... .++..|.+.||+|.++...
T Consensus 27 ~~~mkI~VIGa--------G~mG~---alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 27 PFKHPIAILGA--------GSWGT---ALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCCSCEEEECC--------SHHHH---HHHHHHHTTTCCEEEECSC
T ss_pred ccCCeEEEECc--------cHHHH---HHHHHHHHCCCeEEEEeCC
Confidence 34689999975 32222 5888899999999998765
No 456
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=29.27 E-value=49 Score=29.38 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=24.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+|+++. ..|+.++ .+++.|.+.||+|.+++...
T Consensus 3 ~~vlVtG-------atG~iG~---~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 3 NKILILG-------PTGAIGR---HIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCEEEES-------TTSTTHH---HHHHHHHHHTCCEEEEECCS
T ss_pred cEEEEEC-------CCchHHH---HHHHHHHhCCCcEEEEECCC
Confidence 4666664 3466655 57788888899999987754
No 457
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=29.26 E-value=73 Score=30.13 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=26.6
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++.|||+++.. |. ....+++++.+.|++|.++....
T Consensus 17 ~~~~~ili~g~--------g~---~g~~~~~a~~~~G~~v~~v~~~~ 52 (433)
T 2dwc_A 17 DSAQKILLLGS--------GE---LGKEIAIEAQRLGVEVVAVDRYA 52 (433)
T ss_dssp TTCCEEEEESC--------SH---HHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCEEEEECC--------CH---HHHHHHHHHHHCCCEEEEEECCC
Confidence 34679999863 21 34567899999999999987764
No 458
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=29.13 E-value=77 Score=25.60 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCEEEeCCCCCCCCChH--HHHHHH-------cCCcEEEeCCCCcccceeecCCce---------eEeCC
Q 011355 358 QTRLAMFYNAIDIFVNPTLRAQGLDHT--VLEAML-------SGKPLMATRLASIVGSVIVGTDMG---------YLFSP 419 (488)
Q Consensus 358 ~~~l~~~~~~adv~v~ps~~~eg~~~~--~lEAma-------~G~PVI~~~~~~~~~e~v~~~~~g---------~l~~~ 419 (488)
.+--.-+...||.+|.- +.|+|.- ++|++. .++| +..+ +... .++ -..| +.+..
T Consensus 88 ~~Rk~~~~~~sda~ivl---pGG~GTl~El~e~lt~~q~g~~~~kP-vll~-g~~~-~l~--~~~gfi~~~~~~~~~~~~ 159 (171)
T 1weh_A 88 PQRIGRLLDLGAGYLAL---PGGVGTLAELVLAWNLLYLRRGVGRP-LAVD-PYWL-GLL--KAHGEIAPEDVGLLRVVA 159 (171)
T ss_dssp HHHHHHHHHHEEEEEEC---SCCHHHHHHHHHHHHHHHTCSSCSCC-EEEC-GGGG-GTC--CCBTTBCHHHHTTSEECC
T ss_pred HHHHHHHHHhCCEEEEe---CCCccHHHHHHHHHHHHHhCccCCCe-EEEC-cchh-hhH--hhcCCCChhhcCeEEEeC
Confidence 34455667789998762 3455644 788888 6899 7777 4443 333 1222 22333
Q ss_pred CHHHHHHHHHH
Q 011355 420 QVESVKKALYG 430 (488)
Q Consensus 420 d~~~la~~i~~ 430 (488)
|++++.+.+.+
T Consensus 160 ~~~e~~~~l~~ 170 (171)
T 1weh_A 160 DEEDLRRFLRS 170 (171)
T ss_dssp SHHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 77777776653
No 459
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=29.09 E-value=55 Score=29.59 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
..|+.+. .+++.|.+.|++|.++..
T Consensus 9 atG~iG~---~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 9 GCGFLGS---NLASFALSQGIDLIVFDN 33 (347)
T ss_dssp TTSHHHH---HHHHHHHHTTCEEEEEEC
T ss_pred CCchhHH---HHHHHHHhCCCEEEEEeC
Confidence 4577766 578888899999999865
No 460
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=29.06 E-value=2.7e+02 Score=23.79 Aligned_cols=106 Identities=8% Similarity=0.015 Sum_probs=64.2
Q ss_pred CCeEEEEEeCCCchh-----HHhhhCCcEEEeCccCHHHHHHHHHh---cCEEEeCCCCCCCCChHHHHHHHc-----CC
Q 011355 327 RSTVFLVAGDGPWGA-----RYRDLGTNVIVLGPLDQTRLAMFYNA---IDIFVNPTLRAQGLDHTVLEAMLS-----GK 393 (488)
Q Consensus 327 ~~~~l~ivG~g~~~~-----~~~~l~~~V~~~g~v~~~~l~~~~~~---adv~v~ps~~~eg~~~~~lEAma~-----G~ 393 (488)
...+++|+-+.+... .++.....|..... .++..+.+.. .|++++=-.-++.-|..+++.+.. .+
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~--~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~ 200 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASH--AREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQL 200 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESS--HHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCC--HHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCC
Confidence 467888888765321 22223334444443 5666666654 367665322234446777776643 47
Q ss_pred cEEE-eCCCCc--ccceeecCCceeEeCC-CHHHHHHHHHHHHhc
Q 011355 394 PLMA-TRLASI--VGSVIVGTDMGYLFSP-QVESVKKALYGIWAD 434 (488)
Q Consensus 394 PVI~-~~~~~~--~~e~v~~~~~g~l~~~-d~~~la~~i~~ll~~ 434 (488)
|||+ |..... ..+.+..|-.+|+..| +.+++...+..+++.
T Consensus 201 ~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 201 AIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp EEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHh
Confidence 8875 332221 1133567889999999 999999999988764
No 461
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=28.99 E-value=56 Score=29.52 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIF 116 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 116 (488)
.+|||+++.. |..+. .++..|.+.||+|+++
T Consensus 18 ~~~kI~IiGa--------Ga~G~---~~a~~L~~~G~~V~l~ 48 (318)
T 3hwr_A 18 QGMKVAIMGA--------GAVGC---YYGGMLARAGHEVILI 48 (318)
T ss_dssp --CEEEEESC--------SHHHH---HHHHHHHHTTCEEEEE
T ss_pred cCCcEEEECc--------CHHHH---HHHHHHHHCCCeEEEE
Confidence 6799999974 44433 4778888999999998
No 462
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=28.90 E-value=71 Score=27.55 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=25.6
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 7 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~~ 40 (256)
T 2d1y_A 7 KGVLVTG------GARGIGR---AIAQAFAREGALVALCDLRP 40 (256)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESST
T ss_pred CEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCCh
Confidence 4566664 5678776 58889999999998887654
No 463
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=28.65 E-value=69 Score=27.46 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=25.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 8 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~~ 41 (249)
T 2ew8_A 8 KLAVITG------GANGIGR---AIAERFAVEGADIAIADLVP 41 (249)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEeC------CCcHHHH---HHHHHHHHCCCEEEEEcCCc
Confidence 5566664 5677776 68899999999999887643
No 464
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=28.62 E-value=65 Score=27.81 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=25.9
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|+++|+. ..||... .+++.|.++|++|.++...
T Consensus 6 ~k~vlVTG------as~gIG~---aia~~l~~~G~~V~~~~r~ 39 (257)
T 3imf_A 6 EKVVIITG------GSSGMGK---GMATRFAKEGARVVITGRT 39 (257)
T ss_dssp TCEEEETT------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 36677774 5677776 6889999999999887654
No 465
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=28.57 E-value=63 Score=27.70 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 92 AGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 92 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+.+. .+++++.++|++|++++...
T Consensus 28 SG~mG~---aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 28 TGHLGK---IITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp CCHHHH---HHHHHHHHTTCEEEEEECTT
T ss_pred CCHHHH---HHHHHHHHCCCEEEEEeCCc
Confidence 565665 68999999999999998764
No 466
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=28.52 E-value=34 Score=31.40 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=30.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.+|||+++...... ..-=.-.....++++|.+.||+|..+.....
T Consensus 2 ~~~~v~vl~GG~s~--e~~vSl~sa~~v~~al~~~g~~v~~i~~~~~ 46 (346)
T 3se7_A 2 SHMKIGIIFGGVSE--EHDISVKSAREVATHLGTGVFEPFYLGITKS 46 (346)
T ss_dssp CCEEEEEEEECSST--THHHHHHHHHHHHHHSCTTTEEEEEEEECTT
T ss_pred CCCEEEEEeeecCC--CccHHHHHHHHHHHHhcccCCEEEEEEECCC
Confidence 47899999863211 1111123566788999899999999987643
No 467
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=28.50 E-value=78 Score=27.07 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|+++|+. ..+|..+ .+++.|.++|+.|.++...
T Consensus 7 ~k~vlITG------as~gIG~---~~a~~l~~~G~~v~~~~~~ 40 (255)
T 3icc_A 7 GKVALVTG------ASRGIGR---AIAKRLANDGALVAIHYGN 40 (255)
T ss_dssp TCEEEETT------CSSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEC------CCChHHH---HHHHHHHHCCCeEEEEeCC
Confidence 46777774 5577766 6889999999999887554
No 468
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=28.48 E-value=68 Score=28.11 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=27.3
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
.|+++|+. ..+|+.+ .+++.|.++|++|.++....
T Consensus 33 gk~~lVTG------as~GIG~---aia~~la~~G~~V~~~~r~~ 67 (275)
T 4imr_A 33 GRTALVTG------SSRGIGA---AIAEGLAGAGAHVILHGVKP 67 (275)
T ss_dssp TCEEEETT------CSSHHHH---HHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEcCCH
Confidence 37788875 5677776 68899999999998887654
No 469
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A
Probab=28.45 E-value=65 Score=29.08 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKR-GHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~ 120 (488)
|||+++. ..|+.+. .+++.|.++ ||+|.++....
T Consensus 1 m~vlVtG-------atG~iG~---~l~~~L~~~~g~~V~~~~r~~ 35 (345)
T 2bll_A 1 MRVLILG-------VNGFIGN---HLTERLLREDHYEVYGLDIGS 35 (345)
T ss_dssp CEEEEET-------CSSHHHH---HHHHHHHHSTTCEEEEEESCC
T ss_pred CeEEEEC-------CCcHHHH---HHHHHHHHhCCCEEEEEeCCc
Confidence 6776664 3466665 578888888 89999988654
No 470
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=28.45 E-value=73 Score=29.57 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=26.4
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
++|||+++.. | .....+++++++.|++|.++....
T Consensus 10 ~~~~ili~g~--------g---~~~~~~~~a~~~~G~~v~~~~~~~ 44 (391)
T 1kjq_A 10 AATRVMLLGS--------G---ELGKEVAIECQRLGVEVIAVDRYA 44 (391)
T ss_dssp TCCEEEEESC--------S---HHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCEEEEECC--------C---HHHHHHHHHHHHcCCEEEEEECCC
Confidence 5689998863 2 134578899999999999887764
No 471
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=28.32 E-value=68 Score=29.48 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
..|+.+. .+++.|.++|++|.++.....
T Consensus 32 atG~iG~---~l~~~L~~~g~~V~~~~r~~~ 59 (375)
T 1t2a_A 32 ITGQDGS---YLAEFLLEKGYEVHGIVRRSS 59 (375)
T ss_dssp TTSHHHH---HHHHHHHHTTCEEEEEECCCS
T ss_pred CCchHHH---HHHHHHHHCCCEEEEEECCcc
Confidence 4577665 578889999999999887643
No 472
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=28.27 E-value=1.2e+02 Score=27.65 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=37.4
Q ss_pred HHHHhcCEEEeCCCCCCCCChHHHHHHHc--------CCcEEEeC--CCCcccceeecCCceeEeCCCHHHHHHHHHHHH
Q 011355 363 MFYNAIDIFVNPTLRAQGLDHTVLEAMLS--------GKPLMATR--LASIVGSVIVGTDMGYLFSPQVESVKKALYGIW 432 (488)
Q Consensus 363 ~~~~~adv~v~ps~~~eg~~~~~lEAma~--------G~PVI~~~--~~~~~~e~v~~~~~g~l~~~d~~~la~~i~~ll 432 (488)
..+..+|++|.+.+. . |+..+-.+.+ |+|+|-|. .|..- ++- +.| .. |+.++.++|...+
T Consensus 257 ~~~~~~D~vlaMYHD-Q--Glip~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-DIA---GkG--~A-~~~S~~~Ai~~A~ 326 (334)
T 3lxy_A 257 KYLQHADAVLAMYHD-Q--GLPVLKYQGFGRAVNITLGLPFIRTSVDHGTAL-ELA---ATG--TA-DVGSFITALNLAI 326 (334)
T ss_dssp HHHTTCSEEEESSHH-H--HHHHHHHHHTTCCEEEEESSSSCEEEESSCCCG-GGT---TTT--CS-CCHHHHHHHHHHH
T ss_pred hhhccCCEEEEcccc-h--hhHhHHhcccCccEEEecCCCeeeecCCCCcch-hhc---cCC--CC-ChHHHHHHHHHHH
Confidence 455799999998863 3 5677777776 56666542 22222 221 222 11 7889998887655
Q ss_pred h
Q 011355 433 A 433 (488)
Q Consensus 433 ~ 433 (488)
+
T Consensus 327 ~ 327 (334)
T 3lxy_A 327 K 327 (334)
T ss_dssp H
T ss_pred H
Confidence 3
No 473
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=28.25 E-value=52 Score=29.26 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=25.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
+|+|+++. ..|+.++ .+++.|.+.|++|.+++...
T Consensus 4 ~~~ilVtG-------atG~iG~---~l~~~L~~~g~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVG-------GTGYIGK---RIVNASISLGHPTYVLFRPE 38 (313)
T ss_dssp CCCEEEES-------TTSTTHH---HHHHHHHHTTCCEEEECCSC
T ss_pred CCEEEEEc-------CCcHHHH---HHHHHHHhCCCcEEEEECCC
Confidence 46777765 3455555 57788888999999988764
No 474
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=28.23 E-value=51 Score=29.53 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHC-----C-CeEEEEec
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALAKR-----G-HELHIFTA 118 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~-----G-~~V~v~~~ 118 (488)
++|||+|+.. |.+.. .++..|.+. | |+|+++..
T Consensus 7 ~~m~I~iiG~--------G~mG~---~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 7 QPIKIAVFGL--------GGVGG---YYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CCEEEEEECC--------SHHHH---HHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCEEEEECc--------CHHHH---HHHHHHHhCccccCCCCCEEEEEc
Confidence 4689999974 43333 467777777 9 99998865
No 475
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=28.17 E-value=58 Score=29.12 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=24.2
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
||+++. ..|+.+. .+++.|.+.|++|.+++...
T Consensus 13 ~ilVtG-------atG~iG~---~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 13 KILIFG-------GTGYIGN---HMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CEEEET-------TTSTTHH---HHHHHHHHTTCCEEEEECTT
T ss_pred eEEEEC-------CCchHHH---HHHHHHHHCCCcEEEEECCC
Confidence 666664 3455555 57888999999999988764
No 476
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=28.16 E-value=80 Score=29.01 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=32.9
Q ss_pred CceEEEEEecCCCCCCCCCcHHHHHHHHHHHHH--HCCCeEEEEecCC
Q 011355 75 KLLKIALFVKKWPHRSHAGGLERHALTLHLALA--KRGHELHIFTASC 120 (488)
Q Consensus 75 ~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~--~~G~~V~v~~~~~ 120 (488)
..+||++++. ....|-.+.+.+++..|+ +.|..|.++..+.
T Consensus 16 ~~~~i~~~~g-----kGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 16 DSLKWIFVGG-----KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp TTCSEEEEEC-----STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeC-----CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 4578999985 244566678889999999 8999999999874
No 477
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=28.06 E-value=73 Score=28.11 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|+++|+. ..||+.. .+++.|.++|++|.++....
T Consensus 17 k~vlVTG------as~gIG~---~~a~~L~~~G~~V~~~~r~~ 50 (291)
T 3rd5_A 17 RTVVITG------ANSGLGA---VTARELARRGATVIMAVRDT 50 (291)
T ss_dssp CEEEEEC------CSSHHHH---HHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeC------CCChHHH---HHHHHHHHCCCEEEEEECCH
Confidence 5677764 5678776 68899999999999887653
No 478
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=28.04 E-value=68 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=25.0
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 8 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 40 (260)
T 1nff_A 8 KVALVSG------GARGMGA---SHVRAMVAEGAKVVFGDIL 40 (260)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 4566664 5678776 5788999999999988654
No 479
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=27.95 E-value=69 Score=25.90 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 93 GGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 93 gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
.|......+++..++++|+.|..+|+
T Consensus 87 Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 87 DTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp CSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 34445567999999999999999999
No 480
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=27.93 E-value=32 Score=31.73 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=27.2
Q ss_pred CCceEEEEEecCCCCCCCCCcHH---HHHHHHHHHHHHCCCeEEEEecCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLE---RHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~---~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|++.||+++.... ++=.+ ......+++|.+.||+|..+....
T Consensus 1 M~kkkv~vl~GG~-----S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~ 45 (357)
T 4fu0_A 1 MQNKKIAVIFGGN-----STEYEVSLQSASAVFENINTNKFDIIPIGITR 45 (357)
T ss_dssp -CCEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECT
T ss_pred CCCCEEEEEECCC-----ccchHHHHHHHHHHHHHHhHhCCEEEEEEEeC
Confidence 4567999997421 11111 234567899999999999986554
No 481
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=27.89 E-value=65 Score=27.82 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=25.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 15 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 47 (260)
T 2zat_A 15 KVALVTA------STDGIGL---AIARRLAQDGAHVVVSSRK 47 (260)
T ss_dssp CEEEESS------CSSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5666664 5677776 5889999999999988754
No 482
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=27.87 E-value=64 Score=27.87 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=25.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 5 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 37 (260)
T 1x1t_A 5 KVAVVTG------STSGIGL---GIATALAAQGADIVLNGFG 37 (260)
T ss_dssp CEEEETT------CSSHHHH---HHHHHHHHTTCEEEEECCS
T ss_pred CEEEEeC------CCcHHHH---HHHHHHHHcCCEEEEEeCC
Confidence 5566764 5677776 6889999999999887654
No 483
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=27.87 E-value=76 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=25.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|.++|+. ..||..+ .+++.|.++|++|.++....
T Consensus 8 k~vlVTG------as~giG~---~ia~~l~~~G~~V~~~~r~~ 41 (250)
T 2fwm_X 8 KNVWVTG------AGKGIGY---ATALAFVEAGAKVTGFDQAF 41 (250)
T ss_dssp CEEEEES------TTSHHHH---HHHHHHHHTTCEEEEEESCC
T ss_pred CEEEEeC------CCcHHHH---HHHHHHHHCCCEEEEEeCch
Confidence 4566664 5678776 57899999999999887654
No 484
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=27.83 E-value=70 Score=27.42 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=25.4
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 8 k~~lVTG------as~gIG~---aia~~l~~~G~~V~~~~r~ 40 (247)
T 2jah_A 8 KVALITG------ASSGIGE---ATARALAAEGAAVAIAARR 40 (247)
T ss_dssp CEEEEES------CSSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEECC
Confidence 5666664 5678776 5889999999999888654
No 485
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=27.80 E-value=3.4e+02 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=28.0
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
.|+++|+. ..+|+.. .+++.|.++|++|.++.....
T Consensus 45 gk~vlVTG------as~GIG~---aia~~La~~Ga~Vvl~~r~~~ 80 (346)
T 3kvo_A 45 GCTVFITG------ASRGIGK---AIALKAAKDGANIVIAAKTAQ 80 (346)
T ss_dssp TCEEEEET------TTSHHHH---HHHHHHHTTTCEEEEEESCCS
T ss_pred CCEEEEeC------CChHHHH---HHHHHHHHCCCEEEEEECChh
Confidence 36788875 5677776 688999999999998877654
No 486
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=27.80 E-value=73 Score=27.19 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=25.4
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
-|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 14 ~k~vlVTG------as~gIG~---~~a~~l~~~G~~V~~~~r~ 47 (249)
T 3f9i_A 14 GKTSLITG------ASSGIGS---AIARLLHKLGSKVIISGSN 47 (249)
T ss_dssp TCEEEETT------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEcCC
Confidence 35566664 5677776 6889999999999988764
No 487
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=27.78 E-value=1.7e+02 Score=26.02 Aligned_cols=91 Identities=9% Similarity=-0.072 Sum_probs=50.6
Q ss_pred HHHHHHHhcCEEEeCCCCCCC----CChHHHHHHHcC--CcEEEeCCCCcccceee-------cCCceeEeCC-CHHHHH
Q 011355 360 RLAMFYNAIDIFVNPTLRAQG----LDHTVLEAMLSG--KPLMATRLASIVGSVIV-------GTDMGYLFSP-QVESVK 425 (488)
Q Consensus 360 ~l~~~~~~adv~v~ps~~~eg----~~~~~lEAma~G--~PVI~~~~~~~~~e~v~-------~~~~g~l~~~-d~~~la 425 (488)
.-..-++.||++|.-...-|+ |--.+++..... .++|.... ++. .+-. ...--++.+| +...++
T Consensus 59 ~d~~~l~~Adlvv~~G~~lE~~~~~w~~k~~~~~~~~~~~~~v~~s~-gi~-~~~~~~~~~~~~~dPHvWldp~~~~~~a 136 (294)
T 3hh8_A 59 EDAEKTSNADVIFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSD-GID-VIYLEGASEKGKEDPHAWLNLENGIIYS 136 (294)
T ss_dssp HHHHHHHHCSEEEECCTTSSCSTTSHHHHHHHHTTCCBTTTEEETTT-TSC-CCBSTTCCSTTCBCCCGGGSHHHHHHHH
T ss_pred HHHHHHHhCCEEEEcCCCccchHHHHHHHHHHhccccCCceEEEccC-Ccc-cccCCCccCCCCCCCceeCCHHHHHHHH
Confidence 334667899999885542354 555666665543 56765432 221 1100 0122356666 777777
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHhh
Q 011355 426 KALYGIWAD-GREVLEKKGLVARKRGLN 452 (488)
Q Consensus 426 ~~i~~ll~~-~~~~~~~~~~~a~~~~~~ 452 (488)
+.|.+.+.. +|+......+|+.++..+
T Consensus 137 ~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 164 (294)
T 3hh8_A 137 KNIAKQLIAKDPKNKETYEKNLKAYVAK 164 (294)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 777666542 366656666666655543
No 488
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=27.76 E-value=72 Score=27.70 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=25.5
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 14 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 46 (267)
T 1iy8_A 14 RVVLITG------GGSGLGR---ATAVRLAAEGAKLSLVDVS 46 (267)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5667764 5678776 5788999999999988654
No 489
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=27.76 E-value=67 Score=27.77 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=25.3
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 8 k~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 40 (260)
T 2z1n_A 8 KLAVVTA------GSSGLGF---ASALELARNGARLLLFSRN 40 (260)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5667764 5678776 6888999999999888654
No 490
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=27.73 E-value=57 Score=29.90 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 91 HAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 91 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
..|+.+. .+++.|.++|++|.++....
T Consensus 9 atG~iG~---~l~~~L~~~g~~V~~~~r~~ 35 (372)
T 1db3_A 9 VTGQDGS---YLAEFLLEKGYEVHGIKRRA 35 (372)
T ss_dssp TTSHHHH---HHHHHHHHTTCEEEEECC--
T ss_pred CCChHHH---HHHHHHHHCCCEEEEEECCC
Confidence 4577766 57888989999999987654
No 491
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=27.68 E-value=70 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=25.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 12 k~vlITG------asggiG~---~la~~l~~~G~~V~~~~r~ 44 (254)
T 2wsb_A 12 ACAAVTG------AGSGIGL---EICRAFAASGARLILIDRE 44 (254)
T ss_dssp CEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5566664 5677776 6889999999999988764
No 492
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=27.65 E-value=67 Score=27.75 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.1
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 10 k~vlVTG------as~giG~---~ia~~l~~~G~~V~~~~r~ 42 (260)
T 2ae2_A 10 CTALVTG------GSRGIGY---GIVEELASLGASVYTCSRN 42 (260)
T ss_dssp CEEEEES------CSSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 5566664 5677776 5788999999999888654
No 493
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=27.62 E-value=63 Score=27.63 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=24.7
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTA 118 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 118 (488)
|.++|+. ..||..+ .+++.|.++|++|.++..
T Consensus 5 k~vlVTG------as~giG~---~ia~~l~~~G~~V~~~~r 36 (246)
T 2uvd_A 5 KVALVTG------ASRGIGR---AIAIDLAKQGANVVVNYA 36 (246)
T ss_dssp CEEEETT------CSSHHHH---HHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCcHHHH---HHHHHHHHCCCEEEEEeC
Confidence 5566664 5677776 578899999999988865
No 494
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=27.58 E-value=76 Score=29.26 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=25.4
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEecCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRG-HELHIFTASC 120 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~ 120 (488)
.|+|+++. ..|+.+. .+++.|.++| ++|.++....
T Consensus 32 ~~~ilVtG-------atG~iG~---~l~~~L~~~g~~~V~~~~r~~ 67 (377)
T 2q1s_A 32 NTNVMVVG-------GAGFVGS---NLVKRLLELGVNQVHVVDNLL 67 (377)
T ss_dssp TCEEEEET-------TTSHHHH---HHHHHHHHTTCSEEEEECCCT
T ss_pred CCEEEEEC-------CccHHHH---HHHHHHHHcCCceEEEEECCC
Confidence 46666654 3566665 5788899999 9999987654
No 495
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=27.55 E-value=72 Score=27.29 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=24.9
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|.++|+. ..||..+ .+++.|.++|++|.++...
T Consensus 6 k~vlVTG------as~giG~---~ia~~l~~~G~~V~~~~r~ 38 (245)
T 1uls_A 6 KAVLITG------AAHGIGR---ATLELFAKEGARLVACDIE 38 (245)
T ss_dssp CEEEEES------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 4566664 5677776 5788999999999988654
No 496
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=27.44 E-value=48 Score=29.26 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=23.6
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC 120 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 120 (488)
|||+++. ..|+.+. .+++.|. +||+|.++....
T Consensus 1 m~ilVtG-------atG~iG~---~l~~~L~-~g~~V~~~~r~~ 33 (299)
T 1n2s_A 1 MNILLFG-------KTGQVGW---ELQRSLA-PVGNLIALDVHS 33 (299)
T ss_dssp CEEEEEC-------TTSHHHH---HHHHHTT-TTSEEEEECTTC
T ss_pred CeEEEEC-------CCCHHHH---HHHHHhh-cCCeEEEecccc
Confidence 6777665 3466665 5777888 799999987643
No 497
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=27.39 E-value=1.1e+02 Score=27.26 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=27.3
Q ss_pred ceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 011355 76 LLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLN 122 (488)
Q Consensus 76 ~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 122 (488)
+++|++|+.+ ..-.+..+-.++..+.+.|++|.+++.+.+.
T Consensus 4 ~~~vL~v~AH------PDDe~l~~ggtla~~~~~G~~V~vv~lT~Ge 44 (303)
T 1q74_A 4 TPRLLFVHAH------PDDESLSNGATIAHYTSRGAQVHVVTCTLGE 44 (303)
T ss_dssp CCEEEEEESS------TTHHHHHHHHHHHHHHHTTCEEEEEESCCCT
T ss_pred CCeEEEEEeC------CchHHHhHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 4689999863 2333333334555666789999999988654
No 498
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=27.38 E-value=80 Score=27.60 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=25.8
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 78 KIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 78 kIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
|+++|+. ..+|..+ .+++.|.++|++|.++...
T Consensus 31 k~vlVTG------as~GIG~---aia~~l~~~G~~Vi~~~r~ 63 (281)
T 3ppi_A 31 ASAIVSG------GAGGLGE---ATVRRLHADGLGVVIADLA 63 (281)
T ss_dssp EEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 6777774 5677776 6889999999999887654
No 499
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=27.18 E-value=66 Score=28.17 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=26.7
Q ss_pred eEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Q 011355 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTAS 119 (488)
Q Consensus 77 mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 119 (488)
.|+++|+. ..||+.+ .+++.|.++|++|.++...
T Consensus 28 ~k~~lVTG------as~GIG~---aia~~la~~G~~V~~~~r~ 61 (272)
T 4dyv_A 28 KKIAIVTG------AGSGVGR---AVAVALAGAGYGVALAGRR 61 (272)
T ss_dssp CCEEEETT------TTSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeC------CCcHHHH---HHHHHHHHCCCEEEEEECC
Confidence 47788875 5678776 6889999999999887654
No 500
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=27.16 E-value=40 Score=31.34 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=30.4
Q ss_pred CCceEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 011355 74 LKLLKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCL 121 (488)
Q Consensus 74 ~~~mkIl~i~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 121 (488)
+++|||+++....-. ..-=.-......+++|.+.||+|+.+.....
T Consensus 2 ~~~~~v~vl~GG~S~--E~evSl~Sa~~v~~~l~~~~~~v~~i~i~~~ 47 (372)
T 3tqt_A 2 AEKLHISVLCGGQST--EHEISIQSAKNIVNTLDAAKYLISVIFIDHV 47 (372)
T ss_dssp CCSEEEEEEEECSST--THHHHHHHHHHHHHHSCTTTEEEEEEEECTT
T ss_pred CCCCEEEEEeccCCC--ccHhHHHHHHHHHHHHhhcCceEEEEEECCC
Confidence 368999999864311 1111123456777888888999999887643
Done!