BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011356
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 414 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 463
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 304 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 7/241 (2%)
Query: 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 295
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G+ VYS+G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGMEVYSWGW 83
Query: 296 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 355
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 84 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL 141
Query: 356 GHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVS 415
G GD D +P+ + + + V A T + + G +YG+GW +G+LG DR +
Sbjct: 142 GLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--T 199
Query: 416 DKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTE 475
D+++ P + S +S ++ G HT+ V+ G L+ +G ++ QLGH L L P +
Sbjct: 200 DRLV-PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 258
Query: 476 I 476
+
Sbjct: 259 L 259
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 115 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 171
Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 172 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 229
Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMALTSDGKLYG 288
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 289 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 353 GALGHGDEIDKTLPEPLSSL 372
G LG G+ +D+ P+ + +L
Sbjct: 347 GQLGIGESVDRNFPKIIEAL 366
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 384
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 65
Query: 385 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 443
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 66 DHTVAYSQSGMEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 444 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 476
VT G + +G N+ QLG L P +I
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 155
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 283
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT+ +S S ++++ G S G LGHG + ++ S + + Q+S H
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNSFISQISGGWRH 276
Query: 175 AAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
+ G+++ G N G + D P+ + R + K V QV+ G T +
Sbjct: 277 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---QVSCGWRHTLAV 332
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 273
T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 333 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 374
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 79
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSD-LFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 255
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315
Query: 414 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 463
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 316 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 7/257 (2%)
Query: 221 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY 280
++AG + + L V + G GQLGHGD DRP+P ++ L+ +V + G +
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADH 79
Query: 281 MLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALD 339
+A + +G+ VYS+G G LGHG D P I+ GI + +++ GD H +A+
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVT 137
Query: 340 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGF 399
G V +WG+ G LG GD D +P+ + + + V A T + + G +YG+
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 400 GWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 459
GW +G+LG DR +D+++ R+ S +S ++ G HT+ V+ G L+ +G ++
Sbjct: 198 GWGRYGNLGLGDR--TDRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254
Query: 460 AQLGHDTLRGCLEPTEI 476
QLGH L L P ++
Sbjct: 255 GQLGHGDLEDHLIPHKL 271
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 115 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 183
Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 184 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 241
Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 242 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWRHTMALTSDGKLYG 300
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 301 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358
Query: 353 GALGHGDEIDKTLPEPLSSL 372
G LG G+ +D+ P+ + +L
Sbjct: 359 GQLGIGESVDRNFPKIIEAL 378
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 384
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 77
Query: 385 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 443
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 78 DHTVAYSQSGMEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 134
Query: 444 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 476
VT G + +G N+ QLG L P +I
Sbjct: 135 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 167
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 236
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 237 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 295
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 296 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 353
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 354 GRGTNGQLGIGESVDRNFPKIIEALSVDG 382
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT+ +S S ++++ G S G LGHG + ++ S + + Q+S H
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNSFISQISGGWRH 288
Query: 175 AAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
+ G+++ G N G + D P+ + R + K V QV+ G T +
Sbjct: 289 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---QVSCGWRHTLAV 344
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 273
T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 345 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 386
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 414 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 463
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 304 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 7/241 (2%)
Query: 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 295
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G+ VYS+G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGMEVYSWGW 83
Query: 296 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 355
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 84 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL 141
Query: 356 GHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVS 415
G GD D +P+ + + + V A T + + G +YG+GW +G+LG DR +
Sbjct: 142 GLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--T 199
Query: 416 DKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTE 475
D+++ P + S +S ++ G HT+ V+ G L+ +G ++ QLGH L L P +
Sbjct: 200 DRLV-PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 258
Query: 476 I 476
+
Sbjct: 259 L 259
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 115 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 171
Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 172 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 229
Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGFRHTMALTSDGKLYG 288
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 289 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 353 GALGHGDEIDKTLPEPLSSL 372
G LG G+ +D+ P+ + +L
Sbjct: 347 GQLGIGESVDRNFPKIIEAL 366
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 384
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 65
Query: 385 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 443
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 66 DHTVAYSQSGMEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 444 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 476
VT G + +G N+ QLG L P +I
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 155
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGFRHTMALTSD 283
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 172/350 (49%), Gaps = 10/350 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 69
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKXVAAGAEHTAAVTEDGDLYGW 187
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
G G LG G++ D L P + + G V+ G H +++ SG +YT+G G
Sbjct: 188 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKXSXVACGWRHTISVSYSGALYTYGWSKYG 245
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 246 QLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNL 305
Query: 414 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 463
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 306 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 7/241 (2%)
Query: 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 295
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G VYS+G
Sbjct: 27 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGXEVYSWGW 85
Query: 296 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 355
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 86 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQL 143
Query: 356 GHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVS 415
G GD D +P+ + + + V A T + + G +YG+GW +G+LG DR +
Sbjct: 144 GLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--T 201
Query: 416 DKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTE 475
D+++ P + S S ++ G HT+ V+ G L+ +G ++ QLGH L L P +
Sbjct: 202 DRLV-PERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 260
Query: 476 I 476
+
Sbjct: 261 L 261
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 6/194 (3%)
Query: 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 330
V+ I+AG S+ +A+ +V S+G G + LGHG+ D P + G +V V+
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSAL--DGHQIVSVTC 65
Query: 331 GDEHVVALDSSGY-VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFV 389
G +H VA SG VY+WG G G LGHG+ D P P+ +L Q+
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 125
Query: 390 LVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRG 449
+ G V +G G LG D ++ L P+ + + + ++ G HT VT+ G
Sbjct: 126 VTXEGEVQSWGRNQNGQLGLGD---TEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDG 182
Query: 450 RLFGFGDNERAQLG 463
L+G+G LG
Sbjct: 183 DLYGWGWGRYGNLG 196
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 8/260 (3%)
Query: 115 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKXVAAGAE 173
Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 174 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKXSXVACGWRHTISVS 231
Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++T G + +GQLGHGD D P + L + QI+ G + A+T +G +Y
Sbjct: 232 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGARHTXALTSDGKLYG 290
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 291 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 348
Query: 353 GALGHGDEIDKTLPEPLSSL 372
G LG G+ +D+ P+ + +L
Sbjct: 349 GQLGIGESVDRNFPKIIEAL 368
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 384
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 67
Query: 385 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 443
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 68 DHTVAYSQSGXEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 124
Query: 444 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 476
VT G + +G N+ QLG L P +I
Sbjct: 125 AVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 157
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ V+ H
Sbjct: 168 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKXSXVACGWRH 226
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 227 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGARHTXALTSD 285
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 286 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 343
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 344 GRGTNGQLGIGESVDRNFPKIIEALSVDG 372
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 164/359 (45%), Gaps = 8/359 (2%)
Query: 117 TTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAA 176
++GR + + +++ G + G LG G E + T + VQ+ E
Sbjct: 8 SSGRENLYFQGSGTIYGWGHNHRGQLG-GIEGAKVKVPTPCEALATLRPVQLIGGEQTLF 66
Query: 177 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV--TAGLNFTGFLTIR 234
V G+++ G + G T + P L+E+++ V K+V +G L+
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFG 294
G V++ G G+LGHG+ P+ I L + VV +AAG ++ VT G +Y++G
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSACVTAAGDLYTWG 184
Query: 295 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGA 354
G LGH + D+L+P+ ++ + + + +GD + L V++WG G G
Sbjct: 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244
Query: 355 LGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGV 414
LG G +P + SL V+V + + L +G+VY +G + LG G
Sbjct: 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGH---GS 301
Query: 415 SDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEP 473
D V RPR + L+ V I+TG H V T+ G ++ +GDN+ QLG T P
Sbjct: 302 DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRP 360
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 9/281 (3%)
Query: 166 VQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL 225
V V++ H + G+V++ G+ GH + + P RPR++E+L+G+ V AG
Sbjct: 110 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS-PCDRPRVIESLRGIEVVDVAAGG 168
Query: 226 NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLA 283
+ +T G ++T G +G+LGH D+ D+ PK + L+ VV IA +G + L
Sbjct: 169 AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH-RVVDIACGSGDAQTLC 227
Query: 284 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY 343
+T + V+S+G G LG G P I + G+ VV+V G + VAL SG
Sbjct: 228 LTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSGA 285
Query: 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 403
VYTWGKG LGHG + P + L+ + + + G VY +G
Sbjct: 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345
Query: 404 FGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVV 444
G LG G ++ + RPR++ +L+ V++++ G HT+
Sbjct: 346 EGQLG---DGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 16/257 (6%)
Query: 225 LNFTGFLTIRGHVHTCGSNTHGQLG--HGDTLDRPTP-KSIAPLEEVGSVVQIAAGPSYM 281
L F G TI G H N GQLG G + PTP +++A L V Q+ G +
Sbjct: 14 LYFQGSGTIYGWGH----NHRGQLGGIEGAKVKVPTPCEALATLRPV----QLIGGEQTL 65
Query: 282 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS 341
AVT +G +Y+ G G+ LG G P +++ + I V V++G +H +AL S
Sbjct: 66 FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 342 GYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGW 401
G VY+WG+ G LGHG+ P + SL+ V V A + + G +Y +G
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185
Query: 402 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS--TGLYHTVVVTDRGRLFGFGDNER 459
+G LG D S+ L+P+++++L+ H V I+ +G T+ +TD ++ +GD +
Sbjct: 186 GRYGRLGHSD---SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDY 242
Query: 460 AQLGHDTLRGCLEPTEI 476
+LG GC P +I
Sbjct: 243 GKLGRGGSDGCKVPMKI 259
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 113/284 (39%), Gaps = 60/284 (21%)
Query: 113 NMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
+ + +G H L L S V+S G + G LGHG + C I VV V+A
Sbjct: 109 KVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-NRSPCDRPRVIESLRGIEVVDVAAG 167
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG---------------- 215
H+A V +G ++T G GH D+ + +P+LVEAL+G
Sbjct: 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL-KPKLVEALQGHRVVDIACGSGDAQTL 226
Query: 216 ----------------------------VPCK----------QVTAGLNFTGFLTIRGHV 237
VP K +V G F+ LT G V
Sbjct: 227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAV 286
Query: 238 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297
+T G + +LGHG P+ + L+ V+ IA G + + T +G VY++G
Sbjct: 287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK-KVIAIATGSLHCVCCTEDGEVYTWGDND 345
Query: 298 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS 341
LG G + +PR + + K ++ RV+ G H +A +S
Sbjct: 346 EGQLGDGTTNAIQRPRLVAALQGKKVN--RVACGSAHTLAWSTS 387
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 159/381 (41%), Gaps = 49/381 (12%)
Query: 131 VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190
V + G G LG G + ++ P VVQ A H + +SGQV++ G N
Sbjct: 29 VLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCN 86
Query: 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCK--------QVTAGLNFTGFLTIRGHVHTCGS 242
G RDT+ VE + VP K QV+AG + T LT G V GS
Sbjct: 87 DEGALG-RDTS--------VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137
Query: 243 --NTHGQLGHGDTLDRPTPKSIAPLE---EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297
+ +G +G L P KS+ P++ +V VV++A+G +++ +T +G +Y+ G G
Sbjct: 138 FRDNNGVIG----LLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLTADGDLYTLGCGE 192
Query: 298 NFCLGH---------GEQHDE--LQPRAIQTFRRKGIHVVRVS---AGDEHVVALDSSGY 343
LG G Q E L P+ + R VR G A+ G+
Sbjct: 193 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 252
Query: 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLA--VQVCARKRKTFVLVDTGSVYGFGW 401
VY +G LG +P+ L+S K+ V + T + G Y G
Sbjct: 253 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 312
Query: 402 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 461
+G LG + G +K + P ++ L A VS ++ G VT GR+F +G Q
Sbjct: 313 AEYGRLGLGE-GAEEKSI-PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 368
Query: 462 LGHDTLRGCLEPTEIFIQEME 482
LG P E+ +++E
Sbjct: 369 LGTGQDEDAWSPVEMMGKQLE 389
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 119/263 (45%), Gaps = 26/263 (9%)
Query: 232 TIRGHVHTCGSNTHGQLGHGDT-LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 290
T G V T G GQLG G+ ++R P ++ E+V VQ AG + + ++ +G V
Sbjct: 24 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV---VQAEAGGMHTVCLSKSGQV 80
Query: 291 YSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 348
YSFG LG + E+ P ++ + VV+VSAGD H AL G V+ WG
Sbjct: 81 YSFGCNDEGALGRDTSVEGSEMVPGKVELQEK----VVQVSAGDSHTAALTDDGRVFLWG 136
Query: 349 --KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGS 406
+ G +G + + K++ P+ V+V + +L G +Y G G
Sbjct: 137 SFRDNNGVIGLLEPMKKSMV-PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 195
Query: 407 LG-----FPDRGVS---DKVLRPR--ILDSL--RAHHVSQIS-TGLYHTVVVTDRGRLFG 453
LG F +RG +++L P+ +L S R H Q + G Y T ++ G ++G
Sbjct: 196 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 255
Query: 454 FGDNERAQLGHDTLRGCLEPTEI 476
FG + QLG C P +
Sbjct: 256 FGLSNYHQLGTPGTESCFIPQNL 278
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 149/367 (40%), Gaps = 46/367 (12%)
Query: 105 DIVETSAGNMQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 163
D+V+ AG M HT+ +S S V+S G + G LG + +
Sbjct: 60 DVVQAEAGGM-------HTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQE 111
Query: 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGV 216
VVQVSA ++H A + G+VF G SF RD N P+ + + V+ V
Sbjct: 112 KVVQVSAGDSHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDV 164
Query: 217 PCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLE 266
P +V +G + LT G ++T G GQLG L+R L+
Sbjct: 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 224
Query: 267 EVGSVVQIA-----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321
GS + G + A++ G VY FG + LG P+ + +F+
Sbjct: 225 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS 284
Query: 322 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI-DKTLPEPLSSLKSHLAVQV 380
V S G H V +DS G Y+ G+ G LG G+ +K++P +S L + +V
Sbjct: 285 TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVAC 344
Query: 381 CARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRIL--DSLRAHHVSQISTG 438
A + + G V+ +G LG G + P + L V +S+G
Sbjct: 345 GA--SVGYAVTKDGRVFAWGMGTNYQLG---TGQDEDAWSPVEMMGKQLENRVVLSVSSG 399
Query: 439 LYHTVVV 445
HTV++
Sbjct: 400 GQHTVLL 406
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 368 PLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSL 427
P ++ V+V R T + G V G G LG + + K +P ++
Sbjct: 5 PADAIPKSKKVKVSHRSHST----EPGLVLTLGQGDVGQLGLGENVMERK--KPALVSI- 57
Query: 428 RAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDT-LRGC-LEPTEIFIQE 480
V Q G HTV ++ G+++ FG N+ LG DT + G + P ++ +QE
Sbjct: 58 -PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE 111
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 159/381 (41%), Gaps = 49/381 (12%)
Query: 131 VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190
V + G G LG G + ++ P VVQ A H + +SGQV++ G N
Sbjct: 18 VLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCN 75
Query: 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCK--------QVTAGLNFTGFLTIRGHVHTCGS 242
G RDT+ VE + VP K QV+AG + T LT G V GS
Sbjct: 76 DEGALG-RDTS--------VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 126
Query: 243 --NTHGQLGHGDTLDRPTPKSIAPLE---EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297
+ +G +G L P KS+ P++ +V VV++A+G +++ +T +G +Y+ G G
Sbjct: 127 FRDNNGVIG----LLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLTADGDLYTLGCGE 181
Query: 298 NFCLGH---------GEQHDE--LQPRAIQTFRRKGIHVVRVS---AGDEHVVALDSSGY 343
LG G Q E L P+ + R VR G A+ G+
Sbjct: 182 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 241
Query: 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLA--VQVCARKRKTFVLVDTGSVYGFGW 401
VY +G LG +P+ L+S K+ V + T + G Y G
Sbjct: 242 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 301
Query: 402 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 461
+G LG + G +K + P ++ L A VS ++ G VT GR+F +G Q
Sbjct: 302 AEYGRLGLGE-GAEEKSI-PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 357
Query: 462 LGHDTLRGCLEPTEIFIQEME 482
LG P E+ +++E
Sbjct: 358 LGTGQDEDAWSPVEMMGKQLE 378
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 119/263 (45%), Gaps = 26/263 (9%)
Query: 232 TIRGHVHTCGSNTHGQLGHGDT-LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 290
T G V T G GQLG G+ ++R P ++ E+V VQ AG + + ++ +G V
Sbjct: 13 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV---VQAEAGGMHTVCLSKSGQV 69
Query: 291 YSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 348
YSFG LG + E+ P ++ + VV+VSAGD H AL G V+ WG
Sbjct: 70 YSFGCNDEGALGRDTSVEGSEMVPGKVELQEK----VVQVSAGDSHTAALTDDGRVFLWG 125
Query: 349 --KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGS 406
+ G +G + + K++ P+ V+V + +L G +Y G G
Sbjct: 126 SFRDNNGVIGLLEPMKKSMV-PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 184
Query: 407 LG-----FPDRGVS---DKVLRPR--ILDSL--RAHHVSQIS-TGLYHTVVVTDRGRLFG 453
LG F +RG +++L P+ +L S R H Q + G Y T ++ G ++G
Sbjct: 185 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 244
Query: 454 FGDNERAQLGHDTLRGCLEPTEI 476
FG + QLG C P +
Sbjct: 245 FGLSNYHQLGTPGTESCFIPQNL 267
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 151/371 (40%), Gaps = 47/371 (12%)
Query: 105 DIVETSAGNMQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 163
D+V+ AG M HT+ +S S V+S G + G LG + +
Sbjct: 49 DVVQAEAGGM-------HTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQE 100
Query: 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGV 216
VVQVSA ++H A + G+VF G SF RD N P+ + + V+ V
Sbjct: 101 KVVQVSAGDSHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDV 153
Query: 217 PCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLE 266
P +V +G + LT G ++T G GQLG L+R L+
Sbjct: 154 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 213
Query: 267 EVGSVVQIA-----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321
GS + G + A++ G VY FG + LG P+ + +F+
Sbjct: 214 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS 273
Query: 322 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI-DKTLPEPLSSLKSHLAVQV 380
V S G H V +DS G Y+ G+ G LG G+ +K++P +S L + +V
Sbjct: 274 TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVAC 333
Query: 381 CARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRIL--DSLRAHHVSQISTG 438
A + + G V+ +G LG G + P + L V +S+G
Sbjct: 334 GA--SVGYAVTKDGRVFAWGMGTNYQLG---TGQDEDAWSPVEMMGKQLENRVVLSVSSG 388
Query: 439 LYHTV-VVTDR 448
HTV +V D+
Sbjct: 389 GQHTVLLVKDK 399
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 19/247 (7%)
Query: 232 TIRGHVHTCGSNTHGQLGHG-DTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 290
T+ G+V CG+ GQLG G D L+R K ++P+ + V I+AG + L +T +G +
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILER---KRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 291 YSFGSGSNFCLGHGEQHD--ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 348
YSFG LG D E +P I + + +SAGD H L G V+ WG
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGK----ALCISAGDSHSACLLEDGRVFAWG 152
Query: 349 KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLG 408
G ID P+ ++ + + + +L G V+ G G LG
Sbjct: 153 SFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212
Query: 409 -FPDRGVSDK-------VLRPRILDSLRAHHVSQISTGLYHTVVVTDRGR-LFGFGDNER 459
+R +S + +LRP L RA I Y T + + + ++ G N
Sbjct: 213 RLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNF 272
Query: 460 AQLGHDT 466
QL H+T
Sbjct: 273 KQLAHET 279
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 19/237 (8%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETT----------QCVSFTRINFPSAAH 164
I +G H ++++ + VF+ G + G LG E + + T++ A
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 165 VVQVSASENHAAFVLQSGQ--VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT 222
+ A+ N+ F+ +S ++ G N+ H + + LK + + +
Sbjct: 244 FEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDI--RHIA 300
Query: 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIAPLEEVGSVVQIAAGPSYM 281
G + T LT G +G+LG GD D P + L E +V + G
Sbjct: 301 GGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE--KIVSVGCGEVCS 358
Query: 282 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 338
AVT +G +YS+GSG N LG G+ DEL+P + + +G H++ S G +H + L
Sbjct: 359 YAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFL 415
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 142/362 (39%), Gaps = 34/362 (9%)
Query: 130 SVFSCGSSLCGVLGHGPETTQCVSFTRI-NFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188
+V CG+ G LG G + + + + P A V +SA H + +SG +++ G
Sbjct: 44 NVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDA---VDISAGGMHNLVLTKSGDIYSFG 100
Query: 189 DNSSFCCGHRDTNR--PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NT 244
N G RDT+ +P L++ C ++AG + + L G V GS ++
Sbjct: 101 CNDEGALG-RDTSEDGSESKPDLIDLPGKALC--ISAGDSHSACLLEDGRVFAWGSFRDS 157
Query: 245 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGH- 303
HG +G ++ TP L E IA+G +++ +T G V++ G LG
Sbjct: 158 HGNMGLTIDGNKRTP---IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRL 214
Query: 304 ------GE----QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
GE + D L+P + R K + + + + S W G
Sbjct: 215 SERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT---NYCTFMRESQTQVIWATGLNN 271
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLA--VQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPD 411
E K L+ +K+ L + + T +L G +G LG D
Sbjct: 272 FKQLAHET-KGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD 330
Query: 412 RGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCL 471
V D V +P I+ L VS + G + VT G+L+ +G QLG L
Sbjct: 331 --VKDVVEKPTIVKKLTEKIVS-VGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDEL 387
Query: 472 EP 473
EP
Sbjct: 388 EP 389
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 35/211 (16%)
Query: 284 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI-HVVRVSAGDEHVVALDSSG 342
V GNG V G G + + L P A GI V +SAG H + L SG
Sbjct: 47 VCGNGDVGQLGLGEDIL-----ERKRLSPVA-------GIPDAVDISAGGMHNLVLTKSG 94
Query: 343 YVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWM 402
+Y++G GALG D + +P A+ + A + L++ G V F W
Sbjct: 95 DIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRV--FAWG 152
Query: 403 GF----GSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 458
F G++G G + +D + I++G H V++T G++F G E
Sbjct: 153 SFRDSHGNMGLTIDGN-----KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207
Query: 459 RAQLGHDTLRGC-----------LEPTEIFI 478
+ QLG + R L PT++ I
Sbjct: 208 QGQLGRLSERSISGEGRRGKRDLLRPTQLII 238
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 23/281 (8%)
Query: 101 EHSSDIVETSAGNMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF 159
E D+++ + I+ G H+ L+ + VF+ GS G+ T T I+
Sbjct: 117 ESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS-FRDSHGNMGLTIDGNKRTPIDL 175
Query: 160 PSAAHVVQVSASENHAAFVLQSGQVFTCG----------DNSSFCCGHRDTNRPIFRPRL 209
+++ +H + +G+VFT G S R R + RP
Sbjct: 176 MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQ 235
Query: 210 VEALKGVPCKQVTAGLNFTGFL--TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE- 266
+ + P + + A N+ F+ + + G N QL H + ++ P++
Sbjct: 236 LIITRAKPFEAIWA-TNYCTFMRESQTQVIWATGLNNFKQLAH---ETKGKEFALTPIKT 291
Query: 267 EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIHV 325
E+ + IA G + + +T + G LG G+ D ++ P ++ K +
Sbjct: 292 ELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEK---I 348
Query: 326 VRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLP 366
V V G+ A+ G +Y+WG G LG GD D+ P
Sbjct: 349 VSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 140/345 (40%), Gaps = 52/345 (15%)
Query: 163 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFC---CGHRDTNRPIFRPRLVEALKGVPCK 219
+H++ H +Q +F C S C G N+ + RPRL L K
Sbjct: 10 SHIINAQEDYKHMYLSVQPLDIF-CWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAK 68
Query: 220 QVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD---------------------- 255
++ G T L +V + G N G LG DT +
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGR-DTSNAKEQLKDMDADDSSDDEDGDLN 127
Query: 256 --RPTP-----KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS--GSNFCLGHGEQ 306
TP +S PL E VVQ+AA + A+ NG VY++G+ + LG +
Sbjct: 128 ELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQD 187
Query: 307 HDELQ--PRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEID-- 362
++Q P + TF + ++V+++ G +H++ LD G V+ WG G LG
Sbjct: 188 KIKIQKTPWKVPTFSK--YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245
Query: 363 -KTL-PEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVL- 419
KTL P P H+ + + + F L + +G FG G + V D L
Sbjct: 246 LKTLDPRPFGL--RHVKY-IASGENHCFALTKDNKLVSWGLNQFGQCGVSE-DVEDGALV 301
Query: 420 -RPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 463
+P+ L + I+ G +H+++++ G L+ G + ++G
Sbjct: 302 TKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVG 346
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 125 LISNSSVFSCGSSLC--GVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQ 180
L SN V++ G+ C G+LG + + + T P S ++VQ++ ++H F+ +
Sbjct: 163 LFSNGEVYAWGTFRCNEGILGFYQDKIK-IQKTPWKVPTFSKYNIVQLAPGKDHILFLDE 221
Query: 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE----ALKGVPCKQVTAGLNFTGFLTIRGH 236
G VF G+ G + R FR + ++ L+ V K + +G N LT
Sbjct: 222 EGMVFAWGNGQQNQLGRKVMER--FRLKTLDPRPFGLRHV--KYIASGENHCFALTKDNK 277
Query: 237 VHTCGSNTHGQLGHGDTLDR----PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
+ + G N GQ G + ++ PK +A + V + IAAG + L ++ +G +YS
Sbjct: 278 LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV-VIRSIAAGEHHSLILSQDGDLYS 336
Query: 293 FGSGSNFCLG----------HGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
G F +G + + H + + + T V+AG H VA+ +G
Sbjct: 337 CGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNG 396
Query: 343 YVYTWGKGYCGALGHGDEIDKT 364
Y+WG G A+G G D T
Sbjct: 397 IAYSWGFGETYAVGLGPFEDDT 418
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 45/218 (20%)
Query: 290 VYSFGSGSNFCLGHG---EQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346
++ +G+GS LG G + + +PR R ++ + G H +ALD V++
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90
Query: 347 WGKGYCGALGHG------------------------DEIDKT---LPE----PLSSLKSH 375
WG GALG +E++ T +P PL+ + H
Sbjct: 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA--EGH 148
Query: 376 LAVQVCARKRKTFVLVDTGSVYGFGWM--GFGSLGFPDRGVSDKV---LRPRILDSLRAH 430
VQ+ A + L G VY +G G LGF DK+ P + + +
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGF----YQDKIKIQKTPWKVPTFSKY 204
Query: 431 HVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLR 468
++ Q++ G H + + + G +F +G+ ++ QLG +
Sbjct: 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVME 242
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 24/244 (9%)
Query: 114 MQITTGRYHTLLISNSS-VFSCGSSLCGVLGHG-PETTQCVSFTRINFPSAAHVVQVSAS 171
+Q+ G+ H L + VF+ G+ LG E + + F HV +++
Sbjct: 207 VQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIASG 265
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP---IFRPRLVEALKGVPCKQVTAGLNFT 228
ENH + + ++ + G N CG + + +P+ + V + + AG + +
Sbjct: 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHS 325
Query: 229 GFLTIRGHVHTCGSNTHGQLG--------------HGDTLDRPTPKSIAPLEEVGSVVQI 274
L+ G +++CG ++G HG P P L V +
Sbjct: 326 LILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTK---LNNVPKFKSV 382
Query: 275 AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIHVVRVSAGDE 333
AAG + +AV NG+ YS+G G + +G G D+ + P I+ + +++ V G +
Sbjct: 383 AAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQ 442
Query: 334 HVVA 337
V+
Sbjct: 443 FSVS 446
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 16/206 (7%)
Query: 156 RINFPSAAH---VVQVSASENHAAFVLQSGQVFTCGD---NSSFCCGHRDTNRPIFRPRL 209
R +FP A VVQ++A++N + + +G+V+ G N ++D + P
Sbjct: 138 RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWK 197
Query: 210 VEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EV 268
V Q+ G + FL G V G+ QLG ++R K++ P +
Sbjct: 198 VPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR-KVMERFRLKTLDPRPFGL 256
Query: 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK-----GI 323
V IA+G ++ A+T + + S+G G ++++ A+ T ++ +
Sbjct: 257 RHVKYIASGENHCFALTKDNKLVSWGLNQ---FGQCGVSEDVEDGALVTKPKRLALPDNV 313
Query: 324 HVVRVSAGDEHVVALDSSGYVYTWGK 349
+ ++AG+ H + L G +Y+ G+
Sbjct: 314 VIRSIAAGEHHSLILSQDGDLYSCGR 339
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 109 TSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQ 167
T +G I G YH+L + + V + G + G + P+ A V
Sbjct: 61 TQSGVDAIAAGNYHSLALKDGEVIAWGGNEDG---------------QTTVPAEARSGVD 105
Query: 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ-- 220
A+ A++ L+ G+V GD+S T P V AL G + K
Sbjct: 106 AIAAGAWASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGG 160
Query: 221 -VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGS 270
+ G N+ G T+ + + G + H L D ++ P E +
Sbjct: 161 VIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSG 220
Query: 271 VVQIAAGPSYMLAVTGNGVVYSFGS 295
V IA+G Y LA+ NG V ++GS
Sbjct: 221 VSAIASGEWYSLALK-NGKVIAWGS 244
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 109 TSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQ 167
T +G I G YH+L + + V + G + G + P+ A V
Sbjct: 63 TQSGVDAIAAGNYHSLALKDGEVIAWGGNEDG---------------QTTVPAEARSGVD 107
Query: 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ-- 220
A+ A++ L+ G+V GD+S T P V AL G + K
Sbjct: 108 AIAAGAWASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGG 162
Query: 221 -VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGS 270
+ G N+ G T+ + + G + H L D ++ P E +
Sbjct: 163 VIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSG 222
Query: 271 VVQIAAGPSYMLAVTGNGVVYSFGS 295
V IA+G Y LA+ NG V ++GS
Sbjct: 223 VSAIASGEWYSLALK-NGKVIAWGS 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,938,813
Number of Sequences: 62578
Number of extensions: 631089
Number of successful extensions: 1834
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1620
Number of HSP's gapped (non-prelim): 59
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)