Query 011356
Match_columns 488
No_of_seqs 539 out of 2144
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 2E-53 4.4E-58 405.7 27.8 352 119-478 57-441 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 3.6E-48 7.8E-53 369.8 28.8 363 77-448 65-465 (476)
3 KOG1427 Uncharacterized conser 100.0 7.3E-45 1.6E-49 325.2 17.7 327 111-448 56-399 (443)
4 KOG1427 Uncharacterized conser 100.0 6.8E-42 1.5E-46 306.1 19.2 349 127-488 18-387 (443)
5 KOG0783 Uncharacterized conser 99.9 2.3E-27 5E-32 237.5 14.1 273 176-458 136-417 (1267)
6 KOG0783 Uncharacterized conser 99.9 5.3E-27 1.1E-31 234.9 14.6 302 127-450 140-451 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 3.8E-24 8.3E-29 222.0 23.1 303 114-443 482-890 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 2E-22 4.4E-27 209.4 20.6 270 164-465 480-854 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 6.3E-12 1.4E-16 87.1 5.4 50 341-390 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 1E-11 2.2E-16 86.1 5.4 51 181-231 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 6.9E-11 1.5E-15 71.2 4.5 30 432-461 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 1.3E-10 2.9E-15 69.9 4.9 30 377-406 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 1.1E-12 2.5E-17 134.2 -8.4 188 206-449 4-197 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 1.6E-11 3.4E-16 126.0 -6.2 134 324-460 15-156 (850)
15 PF12937 F-box-like: F-box-lik 98.1 3.4E-07 7.4E-12 61.9 -1.2 35 10-46 1-35 (47)
16 PF00646 F-box: F-box domain; 97.5 1.8E-05 4E-10 53.6 -0.4 37 8-46 1-37 (48)
17 smart00256 FBOX A Receptor for 97.2 7.8E-05 1.7E-09 48.4 -0.4 32 13-46 1-32 (41)
18 KOG0274 Cdc4 and related F-box 95.6 3.8 8.1E-05 43.0 26.9 225 171-464 260-488 (537)
19 PF11725 AvrE: Pathogenicity f 95.4 0.38 8.2E-06 55.0 15.1 246 164-454 490-769 (1774)
20 KOG2997 F-box protein FBX9 [Ge 94.9 0.004 8.7E-08 58.3 -1.6 79 5-94 102-184 (366)
21 KOG3669 Uncharacterized conser 94.8 2.6 5.7E-05 43.1 17.2 107 223-346 190-298 (705)
22 KOG3669 Uncharacterized conser 94.1 2.8 6.1E-05 42.9 15.8 107 276-398 190-298 (705)
23 PF11725 AvrE: Pathogenicity f 90.7 2.1 4.6E-05 49.3 11.1 117 262-394 697-815 (1774)
24 PF13013 F-box-like_2: F-box-l 88.2 0.15 3.3E-06 40.7 0.1 34 8-43 20-53 (109)
25 KOG0291 WD40-repeat-containing 87.8 42 0.00092 36.0 21.9 127 160-299 295-425 (893)
26 KOG0943 Predicted ubiquitin-pr 85.3 0.13 2.8E-06 56.3 -2.2 132 215-351 373-506 (3015)
27 PHA02713 hypothetical protein; 84.3 23 0.0005 37.6 14.1 21 171-191 341-361 (557)
28 KOG0315 G-protein beta subunit 83.7 37 0.0008 31.5 19.6 67 217-295 126-196 (311)
29 PHA03098 kelch-like protein; P 82.6 63 0.0014 34.0 16.6 21 9-29 145-165 (534)
30 KOG0315 G-protein beta subunit 82.2 42 0.00092 31.1 17.9 59 278-349 136-196 (311)
31 KOG2120 SCF ubiquitin ligase, 80.0 0.67 1.5E-05 43.8 0.5 44 10-55 98-142 (419)
32 KOG1900 Nuclear pore complex, 79.7 64 0.0014 37.0 15.3 200 127-349 97-339 (1311)
33 KOG0291 WD40-repeat-containing 78.9 1E+02 0.0022 33.3 21.4 118 113-244 300-423 (893)
34 PF07569 Hira: TUP1-like enhan 78.4 12 0.00026 34.3 8.3 29 269-297 13-41 (219)
35 KOG0943 Predicted ubiquitin-pr 77.5 2.8 6E-05 46.6 4.2 81 374-455 373-454 (3015)
36 PLN02153 epithiospecifier prot 76.2 82 0.0018 30.9 20.9 18 279-297 130-147 (341)
37 PF02239 Cytochrom_D1: Cytochr 74.7 91 0.002 31.1 14.0 122 159-294 23-156 (369)
38 KOG0649 WD40 repeat protein [G 73.0 79 0.0017 29.3 11.6 80 269-349 63-143 (325)
39 KOG4441 Proteins containing BT 72.4 72 0.0016 34.0 13.3 197 121-349 325-530 (571)
40 PF07569 Hira: TUP1-like enhan 71.8 22 0.00047 32.6 8.1 28 215-242 12-39 (219)
41 KOG0646 WD40 repeat protein [G 70.3 1.3E+02 0.0027 30.5 16.3 52 127-191 101-154 (476)
42 PRK14131 N-acetylneuraminic ac 69.9 1.2E+02 0.0027 30.2 14.7 18 173-190 131-148 (376)
43 KOG1408 WD40 repeat protein [F 68.4 1.4E+02 0.003 32.2 13.5 27 215-241 217-247 (1080)
44 PLN02153 epithiospecifier prot 68.1 1.3E+02 0.0027 29.6 19.5 17 121-137 78-94 (341)
45 COG4257 Vgb Streptogramin lyas 68.1 77 0.0017 30.0 10.6 137 278-454 63-205 (353)
46 smart00706 TECPR Beta propelle 67.8 10 0.00022 23.2 3.5 25 163-187 8-33 (35)
47 smart00706 TECPR Beta propelle 66.5 13 0.00027 22.7 3.8 24 217-240 9-33 (35)
48 PRK05560 DNA gyrase subunit A; 64.5 2.4E+02 0.0052 31.5 22.1 217 169-405 545-775 (805)
49 TIGR01063 gyrA DNA gyrase, A s 63.2 2.5E+02 0.0055 31.3 22.8 215 169-403 543-770 (800)
50 KOG0646 WD40 repeat protein [G 62.7 1.8E+02 0.0039 29.5 18.3 153 218-400 84-245 (476)
51 COG4257 Vgb Streptogramin lyas 60.1 1.1E+02 0.0025 28.9 10.1 139 121-293 64-205 (353)
52 PF04841 Vps16_N: Vps16, N-ter 60.0 2E+02 0.0044 29.2 21.6 75 156-240 75-152 (410)
53 KOG0278 Serine/threonine kinas 59.9 1.5E+02 0.0032 27.6 11.3 84 203-301 132-218 (334)
54 TIGR02658 TTQ_MADH_Hv methylam 59.5 1.9E+02 0.0041 28.7 23.0 116 329-458 202-319 (352)
55 KOG4693 Uncharacterized conser 55.1 1.3E+02 0.0027 28.4 9.5 159 120-294 80-257 (392)
56 KOG1408 WD40 repeat protein [F 55.1 41 0.0009 35.9 7.1 29 426-454 214-246 (1080)
57 PHA02713 hypothetical protein; 54.8 1.3E+02 0.0029 31.9 11.4 15 124-138 347-361 (557)
58 TIGR01063 gyrA DNA gyrase, A s 53.8 3.6E+02 0.0078 30.2 23.8 217 222-463 543-775 (800)
59 KOG1900 Nuclear pore complex, 53.3 2.9E+02 0.0063 32.1 13.6 208 175-401 92-339 (1311)
60 PRK14131 N-acetylneuraminic ac 53.3 2.4E+02 0.0053 28.0 20.5 18 279-296 131-148 (376)
61 PHA03098 kelch-like protein; P 51.4 1.9E+02 0.0042 30.3 12.0 18 121-138 335-352 (534)
62 KOG1274 WD40 repeat protein [G 50.3 4E+02 0.0086 29.6 14.1 148 224-399 14-165 (933)
63 KOG4441 Proteins containing BT 50.3 1E+02 0.0022 32.8 9.6 60 389-456 471-530 (571)
64 TIGR03300 assembly_YfgL outer 46.1 3.1E+02 0.0066 27.1 14.0 16 439-454 361-376 (377)
65 PF06881 Elongin_A: RNA polyme 44.8 12 0.00025 30.1 1.2 32 9-42 3-34 (109)
66 PF02239 Cytochrom_D1: Cytochr 44.5 3.4E+02 0.0073 27.1 15.6 150 113-297 29-192 (369)
67 TIGR01062 parC_Gneg DNA topois 44.2 4.8E+02 0.01 28.8 16.4 160 277-464 493-661 (735)
68 KOG1240 Protein kinase contain 42.3 6.1E+02 0.013 29.5 17.7 208 164-400 1050-1271(1431)
69 PF06739 SBBP: Beta-propeller 40.9 33 0.00072 21.5 2.6 19 333-351 15-33 (38)
70 PRK13979 DNA topoisomerase IV 39.4 6.4E+02 0.014 28.9 22.3 129 164-302 553-695 (957)
71 KOG0293 WD40 repeat-containing 39.0 4.2E+02 0.0091 26.7 11.5 71 269-350 396-470 (519)
72 KOG4341 F-box protein containi 38.9 10 0.00022 37.8 -0.0 47 11-59 73-120 (483)
73 KOG0281 Beta-TrCP (transducin 38.1 11 0.00024 36.3 0.2 41 10-52 75-120 (499)
74 PF04762 IKI3: IKI3 family; I 38.1 6.6E+02 0.014 28.7 21.8 237 167-454 381-636 (928)
75 cd00200 WD40 WD40 domain, foun 37.4 3E+02 0.0066 24.6 32.2 97 174-296 65-165 (289)
76 KOG3926 F-box proteins [Amino 37.1 10 0.00022 35.3 -0.3 37 7-44 199-235 (332)
77 TIGR03548 mutarot_permut cycli 36.2 1.7E+02 0.0037 28.3 8.2 18 121-138 116-133 (323)
78 PF09372 PRANC: PRANC domain; 35.9 20 0.00043 28.0 1.2 24 10-35 72-95 (97)
79 PRK05560 DNA gyrase subunit A; 35.9 6.7E+02 0.014 28.1 24.1 261 172-463 498-778 (805)
80 KOG0316 Conserved WD40 repeat- 35.8 3.6E+02 0.0079 25.0 14.6 36 153-188 134-171 (307)
81 PF12341 DUF3639: Protein of u 34.8 95 0.0021 18.0 4.0 24 269-292 2-25 (27)
82 KOG1034 Transcriptional repres 34.8 91 0.002 30.2 5.5 57 176-241 323-381 (385)
83 KOG0278 Serine/threonine kinas 32.3 4.3E+02 0.0093 24.8 11.9 37 258-296 135-173 (334)
84 KOG0293 WD40 repeat-containing 30.6 2.9E+02 0.0062 27.8 8.2 25 218-242 443-469 (519)
85 PF07646 Kelch_2: Kelch motif; 30.3 50 0.0011 21.7 2.3 17 121-137 4-20 (49)
86 PHA02790 Kelch-like protein; P 30.0 3.6E+02 0.0078 28.0 9.8 16 122-137 312-327 (480)
87 TIGR03548 mutarot_permut cycli 29.2 5.3E+02 0.011 24.8 15.6 18 226-244 116-133 (323)
88 KOG1034 Transcriptional repres 28.8 1.5E+02 0.0032 28.8 5.8 57 389-456 324-382 (385)
89 KOG2111 Uncharacterized conser 28.4 5.6E+02 0.012 24.9 14.1 161 235-455 75-254 (346)
90 cd00200 WD40 WD40 domain, foun 27.9 4.4E+02 0.0095 23.5 28.5 107 164-296 11-123 (289)
91 PF03785 Peptidase_C25_C: Pept 27.6 1.2E+02 0.0025 22.8 4.0 43 204-248 6-49 (81)
92 PLN03215 ascorbic acid mannose 27.6 2.5E+02 0.0055 28.0 7.6 59 114-188 163-225 (373)
93 PF13418 Kelch_4: Galactose ox 27.2 63 0.0014 21.1 2.4 17 384-400 3-19 (49)
94 PLN03215 ascorbic acid mannose 26.6 3.3E+02 0.0072 27.2 8.2 61 325-400 162-225 (373)
95 PF00167 FGF: Fibroblast growt 26.5 3.5E+02 0.0075 21.9 7.6 65 271-347 2-66 (122)
96 PF03785 Peptidase_C25_C: Pept 26.3 1.1E+02 0.0025 22.9 3.7 33 163-195 16-49 (81)
97 PF04841 Vps16_N: Vps16, N-ter 25.7 7.1E+02 0.015 25.2 22.0 70 111-189 81-154 (410)
98 PF07250 Glyoxal_oxid_N: Glyox 25.5 5.5E+02 0.012 23.9 12.2 163 121-297 1-190 (243)
99 KOG0641 WD40 repeat protein [G 25.4 3E+02 0.0065 25.2 6.8 22 438-459 90-111 (350)
100 PF06433 Me-amine-dh_H: Methyl 24.6 1.9E+02 0.004 28.5 5.9 65 276-349 145-212 (342)
101 TIGR02658 TTQ_MADH_Hv methylam 24.3 7.1E+02 0.015 24.7 26.2 74 113-190 40-125 (352)
102 PF01436 NHL: NHL repeat; Int 23.7 1.5E+02 0.0032 16.9 3.2 17 334-350 5-21 (28)
103 PF13964 Kelch_6: Kelch motif 21.8 81 0.0017 20.7 2.1 19 121-139 4-22 (50)
104 PF13854 Kelch_5: Kelch motif 21.4 96 0.0021 19.6 2.3 18 121-138 7-24 (42)
105 smart00442 FGF Acidic and basi 20.4 4.9E+02 0.011 21.4 8.9 65 270-346 3-67 (126)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2e-53 Score=405.74 Aligned_cols=352 Identities=26% Similarity=0.378 Sum_probs=291.7
Q ss_pred cCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCC--CCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcc
Q 011356 119 GRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCC 195 (488)
Q Consensus 119 G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~--~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gql 195 (488)
-..|...+ .-..||+||+|...|||.+........|+..++. +...|++++||+.|+++|++||+||+||.|..|+|
T Consensus 57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L 136 (476)
T COG5184 57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL 136 (476)
T ss_pred cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence 34555566 8899999999999999999887766678877776 44689999999999999999999999999999999
Q ss_pred cCCC---------------CCCceeCCEEecc----CCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCC
Q 011356 196 GHRD---------------TNRPIFRPRLVEA----LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR 256 (488)
Q Consensus 196 G~~~---------------~~~~~~~p~~v~~----~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 256 (488)
|... ......+|..|+. ....+|++++||++++++|+++|+||+||....+.++.+...+.
T Consensus 137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s 216 (476)
T COG5184 137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216 (476)
T ss_pred ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence 9776 2234677888876 23447999999999999999999999999998888888844433
Q ss_pred ------CCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEe
Q 011356 257 ------PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 330 (488)
Q Consensus 257 ------~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~ 330 (488)
.+|..+. ...|+++++|.+|.++|+++|++|.||+|..||||.........+..+..+. .-..|.+|+|
T Consensus 217 ~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vac 291 (476)
T COG5184 217 QKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVAC 291 (476)
T ss_pred ccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhccc
Confidence 3444443 2589999999999999999999999999999999998877766665554332 1224788999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCCCCCCC----CCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCC
Q 011356 331 GDEHVVALDSSGYVYTWGKGYCGALGHGDE----IDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGS 406 (488)
Q Consensus 331 g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~----~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gq 406 (488)
|.+|++||+++|++|+||.|.+||||.++. .....|.....+.+..|.++++|..|+++|..+|.||+||+++.+|
T Consensus 292 G~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~q 371 (476)
T COG5184 292 GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQ 371 (476)
T ss_pred CcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccc
Confidence 999999999999999999999999999822 1233566666677778999999999999999999999999999999
Q ss_pred CCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCC-CCCcccceEEEc
Q 011356 407 LGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDT-LRGCLEPTEIFI 478 (488)
Q Consensus 407 LG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~-~~~~~~p~~v~~ 478 (488)
||..... ...+..|.++... .++.+++||..|+++.+++|+||+||+|++||||.+. ..++..|+.|+.
T Consensus 372 lg~~~~~-~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~ 441 (476)
T COG5184 372 LGIQEEI-TIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ 441 (476)
T ss_pred ccCcccc-eeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccc
Confidence 9998743 3344556655533 3799999999999999999999999999999999975 567778887774
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.6e-48 Score=369.84 Aligned_cols=363 Identities=23% Similarity=0.319 Sum_probs=280.7
Q ss_pred hhhhhhhcccCCCcceeeeee-ecccccccccc----cCCCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCC----
Q 011356 77 NVQIELLNRCNGNWKRVLRFL-QSVEHSSDIVE----TSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGP---- 146 (488)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~---- 146 (488)
.....++.|+.+....+...- ......|...+ ....|++++||+.|+++| +||.||+||.|..|+||...
T Consensus 65 ~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~ 144 (476)
T COG5184 65 VKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDI 144 (476)
T ss_pred hheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccccc
Confidence 334556667666554444321 11112333332 236799999999999999 99999999999999999866
Q ss_pred -----------CCceeeeeeEeeCCC----CCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCC-----ceeC
Q 011356 147 -----------ETTQCVSFTRINFPS----AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR-----PIFR 206 (488)
Q Consensus 147 -----------~~~~~~~p~~~~~~~----~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~-----~~~~ 206 (488)
..+....|..++... ..++++++||++++++|+++|+||+||....+.++.+.... ...+
T Consensus 145 ~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~ 224 (476)
T COG5184 145 CDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFT 224 (476)
T ss_pred ccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeee
Confidence 111234555565522 33899999999999999999999999999888888774321 2244
Q ss_pred CEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEc
Q 011356 207 PRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTG 286 (488)
Q Consensus 207 p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~ 286 (488)
|..+. ...|+++++|..|.++|+++|++|.||+|..||||.........+..+..+-....|+.|+||.+|+++|++
T Consensus 225 p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~ 301 (476)
T COG5184 225 PLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDE 301 (476)
T ss_pred eeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcC
Confidence 44443 457999999999999999999999999999999999888777766666655444668899999999999999
Q ss_pred CCcEEEecCCCCCccCCCCCCC----CcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCC--C
Q 011356 287 NGVVYSFGSGSNFCLGHGEQHD----ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGD--E 360 (488)
Q Consensus 287 ~G~v~~wG~n~~gqlG~~~~~~----~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~--~ 360 (488)
+|+||+||.|.+||||.++... ...|.....+ .+..|..|++|..|+++|..+|.||+||++..+|||..+ .
T Consensus 302 ~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~ 379 (476)
T COG5184 302 DGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEIT 379 (476)
T ss_pred CCeEEEeccchhcccccCcccccceeeccccccccC--CCceEEEEecCcceEEEEecCceEEEecCCccccccCcccce
Confidence 9999999999999999982211 1223322222 334589999999999999999999999999999999998 4
Q ss_pred CCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCc--cCCCCEEEEEec
Q 011356 361 IDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS--LRAHHVSQISTG 438 (488)
Q Consensus 361 ~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~--~~~~~v~~v~~G 438 (488)
.....|+++... .++.+|+||..|+++.+++|+||+||++++|+||.+.. ...+..|+.++. +....++..-+|
T Consensus 380 ~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~--~~~~~~pt~i~~~~~~~~~~i~~g~~ 455 (476)
T COG5184 380 IDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK--EADVLVPTLIRQPLLSGHNIILAGYG 455 (476)
T ss_pred eecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCch--hhhccccccccccccCCCceEEeccC
Confidence 445556655433 35999999999999999999999999999999999875 455677888874 567788888888
Q ss_pred CCeEEEEEcC
Q 011356 439 LYHTVVVTDR 448 (488)
Q Consensus 439 ~~ht~~l~~~ 448 (488)
...+++...-
T Consensus 456 ~~~~v~~~~~ 465 (476)
T COG5184 456 NQFSVIEETM 465 (476)
T ss_pred cceEEEecch
Confidence 8877776543
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=7.3e-45 Score=325.19 Aligned_cols=327 Identities=28% Similarity=0.413 Sum_probs=278.1
Q ss_pred CCceEEEec--CceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEE
Q 011356 111 AGNMQITTG--RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTC 187 (488)
Q Consensus 111 ~~i~~i~~G--~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~w 187 (488)
.+|..|++| ..|+++| -+|+.|.||.|..||||+++.. ...+|+.++-....+|++.+||++|+++||++|++|.+
T Consensus 56 v~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k-~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~af 134 (443)
T KOG1427|consen 56 VNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMK-QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAF 134 (443)
T ss_pred ceEEEEecccchhhEEEEecccceeecccCccCccCccchh-hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEe
Confidence 346677777 5899999 9999999999999999999543 35577777766666999999999999999999999999
Q ss_pred eCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCC------------
Q 011356 188 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD------------ 255 (488)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~------------ 255 (488)
|.|.+||||.++....+..|.++... ...|..|+||..+++.|+..+.|.++|-..|||||+++...
T Consensus 135 GeNK~GQlGlgn~~~~v~s~~~~~~~-~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~ 213 (443)
T KOG1427|consen 135 GENKYGQLGLGNAKNEVESTPLPCVV-SDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAY 213 (443)
T ss_pred cccccccccccccccccccCCCcccc-CccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeee
Confidence 99999999999987666666555433 44689999999999999999999999999999999987654
Q ss_pred --CCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC
Q 011356 256 --RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE 333 (488)
Q Consensus 256 --~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~ 333 (488)
++.|..|..+.. ..|++++||.+|+++++++++||+||.+.||.||+.+..+...|+.+..|...+.--.++.||+.
T Consensus 214 e~~pr~~~i~~~dg-vqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t 292 (443)
T KOG1427|consen 214 EAQPRPKAIASLDG-VQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYT 292 (443)
T ss_pred ecCCCccccccccc-eeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecc
Confidence 234556666554 68999999999999999999999999999999999999999999999999888878889999999
Q ss_pred eEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCC
Q 011356 334 HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413 (488)
Q Consensus 334 h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~ 413 (488)
.++++.+-|.||.||.+.. +......|.++..+.+..+..+.|+..|.++ ..|..+.+||...++.++-+...
T Consensus 293 ~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~ 365 (443)
T KOG1427|consen 293 GSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNG 365 (443)
T ss_pred cceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCccc
Confidence 9999999999999998752 2244567888999999999999999988655 56778999998777665444322
Q ss_pred CCCceecceEcCccCCCCEEEEEecCCeEEEEEcC
Q 011356 414 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDR 448 (488)
Q Consensus 414 ~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~ 448 (488)
......|.+++.+.+..|..|++|..|+++|.++
T Consensus 366 -Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 366 -QKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred -cccccCccccchhcceeccceeeccceEEEEEcc
Confidence 3344678999999999999999999999999865
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=6.8e-42 Score=306.13 Aligned_cols=349 Identities=22% Similarity=0.358 Sum_probs=273.9
Q ss_pred eCCcEEEEeCCCCCCCCCCCCCc--eeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcCCcEEEEeCCCCCcccCCCCCC
Q 011356 127 SNSSVFSCGSSLCGVLGHGPETT--QCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR 202 (488)
Q Consensus 127 ~~g~vy~wG~n~~GqLG~g~~~~--~~~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~ 202 (488)
.-|++..+|.-..-+.|..+... ....|.++.-....+|.-|+.| ..|+++|+-+|+.|+||+|..||||+++. .
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~-k 96 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDM-K 96 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccch-h
Confidence 34666666665555555433222 1224444443333467788776 58999999999999999999999999976 6
Q ss_pred ceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCC-CCceeecCCCCCCCEEEEEeCCCeE
Q 011356 203 PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIAPLEEVGSVVQIAAGPSYM 281 (488)
Q Consensus 203 ~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~-~~p~~i~~~~~~~~i~~i~~G~~~~ 281 (488)
....|+.|+.+...+|++.+||++|+++|+++|++|.||.|.+||||.+...+. ..|..+... . .+|+.|+||.+|+
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~-~-~~v~~v~cga~ft 174 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVV-S-DEVTNVACGADFT 174 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcccc-C-ccceeeccccceE
Confidence 788999999999999999999999999999999999999999999999976542 222222211 1 5899999999999
Q ss_pred EEEEcCCcEEEecCCCCCccCCCCCCCC------------cCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEec
Q 011356 282 LAVTGNGVVYSFGSGSNFCLGHGEQHDE------------LQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 349 (488)
Q Consensus 282 ~~lt~~G~v~~wG~n~~gqlG~~~~~~~------------~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~ 349 (488)
+.|+..+.+.++|.-.|||||++..... ..|++-...+..+..|++++||.+|+++++++++||+||.
T Consensus 175 v~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGF 254 (443)
T KOG1427|consen 175 VWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGF 254 (443)
T ss_pred EEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEecc
Confidence 9999999999999999999999865322 1232222222356789999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccceeecCCC--CCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCcc
Q 011356 350 GYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSL 427 (488)
Q Consensus 350 n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~ 427 (488)
+.||.||+....+...|++++.++ +.--.++.||+..++++.+-|.+|.||.+... .+....|..+..+
T Consensus 255 GGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~---------ge~~mypkP~~dl 325 (443)
T KOG1427|consen 255 GGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN---------GEDWMYPKPMMDL 325 (443)
T ss_pred ccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC---------cccccCCCchhhc
Confidence 999999999999999999887654 44567899999999999999999999976532 3345668888888
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCC--CCCCcccceEEEccccccccCCC
Q 011356 428 RAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHD--TLRGCLEPTEIFIQEMEEDTGLA 488 (488)
Q Consensus 428 ~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g--~~~~~~~p~~v~~~~~~~~~~ia 488 (488)
...++..+-++..|.++- .|..+.+||...+|.++-+ -..+...|.+|+....+.+..+|
T Consensus 326 sgwnl~~~~~~~~h~~v~-ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~Va 387 (443)
T KOG1427|consen 326 SGWNLRWMDSGSMHHFVG-ADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVA 387 (443)
T ss_pred CCccCCCcCccceeeeec-ccccccccccccccccccCccccccccCccccchhcceecccee
Confidence 888999999999887654 5568999999988765543 23566778888887777766654
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=2.3e-27 Score=237.50 Aligned_cols=273 Identities=27% Similarity=0.407 Sum_probs=216.6
Q ss_pred EEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCC--CCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCC
Q 011356 176 AFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDT 253 (488)
Q Consensus 176 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~--~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 253 (488)
.+++.-..||.||.|....||+++. .....|..|..++ +.-+.+|+.+.+|+++|++.|+||++|.+.-|+||.|+.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~-~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNG-KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCC-CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc
Confidence 3456668899999999999999987 5678899888775 445789999999999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCC-CCCcCceeeeecccCCe-eEEEEEeC
Q 011356 254 LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQ-HDELQPRAIQTFRRKGI-HVVRVSAG 331 (488)
Q Consensus 254 ~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~-~~~~~p~~i~~~~~~~~-~i~~i~~g 331 (488)
.....|++|+.+.. .+|.+|++...|+++||++|-||+||.|..+|||..+. .....|.+|......+. .|+.|+||
T Consensus 215 q~~~iPkrV~gL~g-h~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIG-HKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred cccccccccccccc-cceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 99999999999765 79999999999999999999999999999999998755 34456777765544444 79999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCCCCCCCCC-cccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCC
Q 011356 332 DEHVVALDSSGYVYTWGKGYCGALGHGDEID-KTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFP 410 (488)
Q Consensus 332 ~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~ 410 (488)
..|+++-|+. .||+||.|. ||||..+... ...|+.+.. ....|+.|+|...-|+++++++.+|++-.-....+-..
T Consensus 294 ~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n 370 (1267)
T KOG0783|consen 294 KSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFN 370 (1267)
T ss_pred cceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEecccceecCcc
Confidence 9999999977 799999985 9999876643 456765532 34579999999999999999999999875333222211
Q ss_pred CCCCCCceecceEcCc----cCCCCEEEEEecCCeEEEEEcCCCEEEEeCCC
Q 011356 411 DRGVSDKVLRPRILDS----LRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 411 ~~~~~~~~~~P~~v~~----~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~ 458 (488)
....+..+|.. +.-.++.+..+....-+++++-|+||.|-.++
T Consensus 371 -----~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 371 -----VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred -----hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 11112222221 11134556666677788999999999998654
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=5.3e-27 Score=234.95 Aligned_cols=302 Identities=24% Similarity=0.276 Sum_probs=224.9
Q ss_pred eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCC--CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCce
Q 011356 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPI 204 (488)
Q Consensus 127 ~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~--~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 204 (488)
.-..||.||.|.+--||+|+..+ ...|..+.+.... -+.||+.+..|++++++.|+||++|....|.||.++. ...
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde-q~~ 217 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE-QYN 217 (1267)
T ss_pred CccceeEecccccccccccCCCC-CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc-ccc
Confidence 66899999999999999998776 3467777664433 4788999999999999999999999999999999965 677
Q ss_pred eCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCC-CCCceeecCCC--CCCCEEEEEeCCCeE
Q 011356 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-RPTPKSIAPLE--EVGSVVQIAAGPSYM 281 (488)
Q Consensus 205 ~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-~~~p~~i~~~~--~~~~i~~i~~G~~~~ 281 (488)
..|++|+.+.+.+|.+|++...|+++||++|-||+||.|..+|||..+... ...|.+|.... ....|+.|++|..|+
T Consensus 218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred ccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccccee
Confidence 889999999999999999999999999999999999999999999876543 34555554432 115799999999999
Q ss_pred EEEEcCCcEEEecCCCCCccCCCCCCC-CcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCC
Q 011356 282 LAVTGNGVVYSFGSGSNFCLGHGEQHD-ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 360 (488)
Q Consensus 282 ~~lt~~G~v~~wG~n~~gqlG~~~~~~-~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 360 (488)
++.+.. .||+||.|. ||||..++.. ...|+.+.. ....|..+.|...-+++++.++.+|++-.-..-.+-..
T Consensus 298 Vawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~---~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n-- 370 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG---LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFN-- 370 (1267)
T ss_pred eeeecc-eEEEecccC-ceecCCCCCceeecchhhcc---cccceEEEEecCccEEEEecCCcEEEEecccceecCcc--
Confidence 999976 799999975 8999876643 346765533 34579999999999999999999999875322211111
Q ss_pred CCcccceeec----CCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEE
Q 011356 361 IDKTLPEPLS----SLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS 436 (488)
Q Consensus 361 ~~~~~p~~v~----~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~ 436 (488)
.....-..|. .+.-..+.+..+....-+++|+-|+||.|-++.... ......|..+- .|.+|+
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~--------~~c~ftp~r~~-----~isdIa 437 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR--------TSCKFTPLRIF-----EISDIA 437 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce--------eeeecccceee-----ehhhhh
Confidence 0000001111 001123455566677789999999999999654211 11122233222 356777
Q ss_pred ecCCeEEEEEcCCC
Q 011356 437 TGLYHTVVVTDRGR 450 (488)
Q Consensus 437 ~G~~ht~~l~~~G~ 450 (488)
--.+..+++++||.
T Consensus 438 ~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 438 WTANSLILCTRDGC 451 (1267)
T ss_pred hccceEEEEecCcc
Confidence 77788999999993
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.8e-24 Score=222.01 Aligned_cols=303 Identities=22% Similarity=0.303 Sum_probs=211.5
Q ss_pred eEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcC--CcEEEEeCC
Q 011356 114 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQS--GQVFTCGDN 190 (488)
Q Consensus 114 ~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~--G~vy~wG~n 190 (488)
+.+-++....++- .+|+||.-|... ++|.-.... ....+.++ .+|++|+.|-+..+++.-. |.++.-|..
T Consensus 482 v~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~---nWmEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~ 554 (3738)
T KOG1428|consen 482 VDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGN---NWMELCLP--EPIVQISVGIDTIMFRSGAGHGWIASVDDK 554 (3738)
T ss_pred eecccchhhhhhhhcCccEEEecCcc--EEeEEccCC---ceEEecCC--CceEEEEeccchhheeeccCcceEEeccCc
Confidence 4555666665666 999999998653 455433333 23334444 6899999998887777654 444444422
Q ss_pred CCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCC
Q 011356 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 270 (488)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~ 270 (488)
. ....-++....+..+|++|.+...---.++++|++|..|....- .......+..+.. .-
T Consensus 555 k-----------~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~-~~ 614 (3738)
T KOG1428|consen 555 K-----------RNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDN-VM 614 (3738)
T ss_pred c-----------cccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhcccc-ce
Confidence 2 11111222222345678876655545678999999999863211 0011233344433 57
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCc----------------------------------------
Q 011356 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDEL---------------------------------------- 310 (488)
Q Consensus 271 i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~---------------------------------------- 310 (488)
|.+++.|..|.++++.+|+||+||.|..+|+|.-++....
T Consensus 615 isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gv 694 (3738)
T KOG1428|consen 615 ISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGV 694 (3738)
T ss_pred eehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccc
Confidence 8999999999999999999999999999999872211100
Q ss_pred -----------------------------------------------------------Cceeee-ecccCCeeEEEEEe
Q 011356 311 -----------------------------------------------------------QPRAIQ-TFRRKGIHVVRVSA 330 (488)
Q Consensus 311 -----------------------------------------------------------~p~~i~-~~~~~~~~i~~i~~ 330 (488)
.|..+. ...+.+.++.+|+|
T Consensus 695 aC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSC 774 (3738)
T KOG1428|consen 695 ACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSC 774 (3738)
T ss_pred ccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEec
Confidence 011110 00113458999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCC
Q 011356 331 GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFP 410 (488)
Q Consensus 331 g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~ 410 (488)
|..|+++|.+|++||++|+|.+||||.|+......|++|..+.+..+++|++|.+||+++..||.||++|....|||+.+
T Consensus 775 G~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP 854 (3738)
T KOG1428|consen 775 GNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARP 854 (3738)
T ss_pred cCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCceecceEcCccC---CCCEEEEEecCCeEE
Q 011356 411 DRGVSDKVLRPRILDSLR---AHHVSQISTGLYHTV 443 (488)
Q Consensus 411 ~~~~~~~~~~P~~v~~~~---~~~v~~v~~G~~ht~ 443 (488)
.-+...-...|.+++.+. +.....|.+.+..++
T Consensus 855 ~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~ 890 (3738)
T KOG1428|consen 855 AGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSI 890 (3738)
T ss_pred cccccccccCCCcCCCCCccccccceeeccCCCcce
Confidence 654444445677777553 234445555444443
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2e-22 Score=209.41 Aligned_cols=270 Identities=20% Similarity=0.329 Sum_probs=193.7
Q ss_pred CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEe--CCcEEEEE
Q 011356 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI--RGHVHTCG 241 (488)
Q Consensus 164 ~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~--~G~vy~wG 241 (488)
.-+.+-.++...++-+.+|+||..|.... +|.-..+.. -++..-..+|++|+.|-...+++.- +|-+++-+
T Consensus 480 qtv~L~~~RE~A~iqa~sGKvYYaGn~t~--~Gl~e~G~n-----WmEL~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~ 552 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQARSGKVYYAGNGTR--FGLFETGNN-----WMELCLPEPIVQISVGIDTIMFRSGAGHGWIASVD 552 (3738)
T ss_pred hheecccchhhhhhhhcCccEEEecCccE--EeEEccCCc-----eEEecCCCceEEEEeccchhheeeccCcceEEecc
Confidence 45778889999999999999999987653 343333211 1111112478999999988888764 45555554
Q ss_pred CCCC-CccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeeccc
Q 011356 242 SNTH-GQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (488)
Q Consensus 242 ~n~~-gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 320 (488)
.... |.+ .+..| .+..+|+.+.+...---.+.++|++|..|....-. ......+..+
T Consensus 553 D~k~~~~~------Rr~~P------~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~~--------n~SSqmln~L-- 610 (3738)
T KOG1428|consen 553 DKKRNGRL------RRLVP------SNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMRV--------NVSSQMLNGL-- 610 (3738)
T ss_pred Ccccccch------hhcCC------CCcceeEEEeeeeEEEEEEccCCeEEeecceeEEe--------cchHHHhhcc--
Confidence 2211 111 01111 11257888866555556788999999988643110 0011112222
Q ss_pred CCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCC---------------------------------------
Q 011356 321 KGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI--------------------------------------- 361 (488)
Q Consensus 321 ~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~--------------------------------------- 361 (488)
.+.-|.+++.|..|+++++.+|.||+||.|+.+|.|.-...
T Consensus 611 ~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs 690 (3738)
T KOG1428|consen 611 DNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCS 690 (3738)
T ss_pred ccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccc
Confidence 34568999999999999999999999999999999971110
Q ss_pred -----------------------------------------------------C-------cccceeec---CCCCCcEE
Q 011356 362 -----------------------------------------------------D-------KTLPEPLS---SLKSHLAV 378 (488)
Q Consensus 362 -----------------------------------------------------~-------~~~p~~v~---~~~~~~i~ 378 (488)
. ..-|..|. ...+.++.
T Consensus 691 ~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~ 770 (3738)
T KOG1428|consen 691 ARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVS 770 (3738)
T ss_pred ccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEE
Confidence 0 01122222 22355799
Q ss_pred EEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCC
Q 011356 379 QVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 379 ~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~ 458 (488)
+|+||..|+++|.+|++||++|+|.+||||.++. .....|+++..+.+..+++|++|++|++++..||.||+||.-.
T Consensus 771 sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt---~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~ 847 (3738)
T KOG1428|consen 771 SVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDT---LSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFG 847 (3738)
T ss_pred EEeccCceEEEEecCCcEEEecCCcccccCcCcc---ccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEecccc
Confidence 9999999999999999999999999999999984 3445699998888999999999999999999999999999999
Q ss_pred CCCCCCC
Q 011356 459 RAQLGHD 465 (488)
Q Consensus 459 ~GqLG~g 465 (488)
+||||..
T Consensus 848 KGQL~RP 854 (3738)
T KOG1428|consen 848 KGQLARP 854 (3738)
T ss_pred CccccCc
Confidence 9999984
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.28 E-value=6.3e-12 Score=87.15 Aligned_cols=50 Identities=34% Similarity=0.599 Sum_probs=47.2
Q ss_pred CCcEEEEecCCCCCCC-CCCCCCcccceeecCCCCCcEEEEEeeCCeEEEE
Q 011356 341 SGYVYTWGKGYCGALG-HGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVL 390 (488)
Q Consensus 341 ~G~vy~wG~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~l 390 (488)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7788888999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.25 E-value=1e-11 Score=86.12 Aligned_cols=51 Identities=31% Similarity=0.376 Sum_probs=46.8
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEE
Q 011356 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231 (488)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~l 231 (488)
||+||+||.|.+||||..........|++++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999955555789999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.14 E-value=6.9e-11 Score=71.17 Aligned_cols=30 Identities=43% Similarity=0.730 Sum_probs=26.1
Q ss_pred EEEEEecCCeEEEEEcCCCEEEEeCCCCCC
Q 011356 432 VSQISTGLYHTVVVTDRGRLFGFGDNERAQ 461 (488)
Q Consensus 432 v~~v~~G~~ht~~l~~~G~v~~wG~n~~Gq 461 (488)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.11 E-value=1.3e-10 Score=69.92 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=25.9
Q ss_pred EEEEEeeCCeEEEEEcCCcEEEEEcCCCCC
Q 011356 377 AVQVCARKRKTFVLVDTGSVYGFGWMGFGS 406 (488)
Q Consensus 377 i~~v~~G~~~t~~lt~~G~vy~wG~n~~gq 406 (488)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.1e-12 Score=134.20 Aligned_cols=188 Identities=27% Similarity=0.389 Sum_probs=146.8
Q ss_pred CCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEE
Q 011356 206 RPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVT 285 (488)
Q Consensus 206 ~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt 285 (488)
.|+.+..+...++.+++||.+|+++++..|++++||.|.+||+|.+.......|..++.+.. .+..+|++|.+|++++.
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g-~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKG-VPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcC-CcHHHHhcCCCcchhhh
Confidence 35555555556789999999999999999999999999999999985554445888888766 68999999999999987
Q ss_pred cCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCccc
Q 011356 286 GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTL 365 (488)
Q Consensus 286 ~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 365 (488)
. |+++++.+|.++++|....||+|+........
T Consensus 83 ~-----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 83 S-----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred h-----------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 5 89999999999999999999999977777778
Q ss_pred ceeecCCCCCcEEEEEeeCCeEEEEEcC-CcEEEEEcCCCC--CCCCCCCCCCCceecceEcC---ccCCCCEEEEEecC
Q 011356 366 PEPLSSLKSHLAVQVCARKRKTFVLVDT-GSVYGFGWMGFG--SLGFPDRGVSDKVLRPRILD---SLRAHHVSQISTGL 439 (488)
Q Consensus 366 p~~v~~~~~~~i~~v~~G~~~t~~lt~~-G~vy~wG~n~~g--qLG~~~~~~~~~~~~P~~v~---~~~~~~v~~v~~G~ 439 (488)
|..+..+-+..+..|+||..|+++.... |++|..|.+..| ++=. ...+.+.. ......+..+.+|.
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s--------~s~~~~l~~~d~~~~~~~~~~~~g~ 187 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVS--------LSGEDLLRDHDSEKDHRCSLAFAGG 187 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeec--------cchhhhcccccHHHHHHHHHHhcCC
Confidence 8888888888999999999999887654 999999987766 1100 00010011 01122455678888
Q ss_pred CeEEEEEcCC
Q 011356 440 YHTVVVTDRG 449 (488)
Q Consensus 440 ~ht~~l~~~G 449 (488)
..+..+...+
T Consensus 188 dq~~~l~~~~ 197 (850)
T KOG0941|consen 188 DQTFSLSSKG 197 (850)
T ss_pred CceEEEEeec
Confidence 8888876654
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.6e-11 Score=126.02 Aligned_cols=134 Identities=30% Similarity=0.528 Sum_probs=117.8
Q ss_pred eEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEc-------CCcE
Q 011356 324 HVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVD-------TGSV 396 (488)
Q Consensus 324 ~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~-------~G~v 396 (488)
++.+++||.+|+++++..|+++.||.|.+||+|.+.......|..++.+.+....+|++|..|++++.. +|.+
T Consensus 15 ~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~ 94 (850)
T KOG0941|consen 15 HILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKV 94 (850)
T ss_pred hhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccc
Confidence 789999999999999999999999999999999985544445999999999999999999999877665 9999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEc-CCCEEEEeCCCCC
Q 011356 397 YGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTD-RGRLFGFGDNERA 460 (488)
Q Consensus 397 y~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~-~G~v~~wG~n~~G 460 (488)
+.+|....+|+|... ..+...|..+..+-...+..|+||..|+.++.. -|++|.+|.+..|
T Consensus 95 fs~Ga~~~~q~~h~~---~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 95 FSFGAGSTGQLGHSL---TENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cccCCcccccccccc---cccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 999999999999854 445566888877778899999999999998665 5899999999887
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.10 E-value=3.4e-07 Score=61.87 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=30.5
Q ss_pred cccCChHHHHHHHhcCCCCcccccccccccccccCCC
Q 011356 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (488)
Q Consensus 10 ~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~ 46 (488)
+.+||+||+.+||. +|+++|+.+++.|||.|++.+
T Consensus 1 i~~LP~Eil~~If~--~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFS--YLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHT--TS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999 999999999999999999765
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.50 E-value=1.8e-05 Score=53.60 Aligned_cols=37 Identities=35% Similarity=0.572 Sum_probs=29.9
Q ss_pred cccccCChHHHHHHHhcCCCCcccccccccccccccCCC
Q 011356 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (488)
Q Consensus 8 ~~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~ 46 (488)
+++.+||+|++.+||. +|++.|+++|+.|||.|++..
T Consensus 1 ~~~~~LP~~il~~Il~--~l~~~~~~~l~~vsk~~~~~~ 37 (48)
T PF00646_consen 1 FPLSDLPDEILQEILS--YLDPKDLLRLSLVSKRWRSLV 37 (48)
T ss_dssp -HHHHS-HHHHHHHHH--TS-HHHHHHHCTT-HHHHHHH
T ss_pred CCHHHCCHHHHHHHHH--HCcHHHHHHHHHHhhHHHHHH
Confidence 3578999999999999 999999999999999887543
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.16 E-value=7.8e-05 Score=48.44 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=29.8
Q ss_pred CChHHHHHHHhcCCCCcccccccccccccccCCC
Q 011356 13 LPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (488)
Q Consensus 13 lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~ 46 (488)
||+||+..||. +|++.|+.+++.|||.|++..
T Consensus 1 lP~~ll~~I~~--~l~~~d~~~~~~vc~~~~~~~ 32 (41)
T smart00256 1 LPDEILEEILS--KLPPKDLLRLRKVSRRWRSLI 32 (41)
T ss_pred CCHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999 999999999999999988654
No 18
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.56 E-value=3.8 Score=43.04 Aligned_cols=225 Identities=11% Similarity=0.053 Sum_probs=122.2
Q ss_pred CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCC
Q 011356 171 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 250 (488)
Q Consensus 171 G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 250 (488)
|..--+--+.|.++-.|-.+. |++-..-. .....|..+.-...+..--+.|..|.+|=-.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~s-g~C~~~l~------------gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~------- 319 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCST-GECTHSLQ------------GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT------- 319 (537)
T ss_pred CCCEEEEEecCCcEEeEecCC-CcEEEEec------------CCCceEEEEEccCceEeeccCCceEEEEecc-------
Confidence 344444445577777776444 32211100 0111244444455444444567778888322
Q ss_pred CCCCCCCCceeecCCC-CCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEE
Q 011356 251 GDTLDRPTPKSIAPLE-EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 329 (488)
Q Consensus 251 ~~~~~~~~p~~i~~~~-~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~ 329 (488)
.+..+..+. -...|..|.+.....+.-+.+|.|-+|-... + ..+..+......|..+.
T Consensus 320 -------n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~-~-------------~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 320 -------NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT-G-------------KCLKSLSGHTGRVYSLI 378 (537)
T ss_pred -------CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh-c-------------eeeeeecCCcceEEEEE
Confidence 233333332 2368999999999999999999999996542 1 12233333344677776
Q ss_pred eCC-CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCC--cEEEEEeeCCeEEEEEcCCcEEEEEcCCCCC
Q 011356 330 AGD-EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSH--LAVQVCARKRKTFVLVDTGSVYGFGWMGFGS 406 (488)
Q Consensus 330 ~g~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~--~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gq 406 (488)
.+. .+.+=-.-|+.+-.|-....- +.+..+... -+..+.+-..|-+--..||+|..|-.++.++
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~~~-------------~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRTKR-------------KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred ecCcceEEeeeeccceEeecCCchh-------------hhhhhhcCCcccccccccccceeEeccccccEEEeecccCce
Confidence 666 666555556777777653310 112222111 1233444444444455688999995544333
Q ss_pred CCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCC
Q 011356 407 LGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGH 464 (488)
Q Consensus 407 LG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~ 464 (488)
+=. ...| ....|..++.+....++-..+|++.-| +=..|++..
T Consensus 446 ~~~--------~~~~------~~~~v~~l~~~~~~il~s~~~~~~~l~-dl~~~~~~~ 488 (537)
T KOG0274|consen 446 LRT--------LEGR------HVGGVSALALGKEEILCSSDDGSVKLW-DLRSGTLIR 488 (537)
T ss_pred eee--------eccC------CcccEEEeecCcceEEEEecCCeeEEE-ecccCchhh
Confidence 211 0111 123566677666777778888998888 334455543
No 19
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.44 E-value=0.38 Score=55.04 Aligned_cols=246 Identities=15% Similarity=0.201 Sum_probs=127.0
Q ss_pred CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEe--------------ccC-C--CCC---eEEEEe
Q 011356 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLV--------------EAL-K--GVP---CKQVTA 223 (488)
Q Consensus 164 ~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v--------------~~~-~--~~~---i~~V~~ 223 (488)
..+.|.....+-++.+.+|+||+--..... .. .......|... ..+ . +-. +++=..
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~---~~-~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~ 565 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ---DN-EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQ 565 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc---CC-CcceEeccccccccccccccccceeeccccCCCCeeeEEEeccC
Confidence 677788888889999999999986544321 11 11112222222 111 0 111 223345
Q ss_pred cCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCC
Q 011356 224 GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGH 303 (488)
Q Consensus 224 G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~ 303 (488)
|..|+++|+++|.=|.=|+|-.-.|-.....-...|.. + ..-..+-.|..-.++|. +|+|+.|-....+.-..
T Consensus 566 GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~-p-----~~~~~ldl~r~G~v~L~-~G~i~~wD~ttq~W~~~ 638 (1774)
T PF11725_consen 566 GQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPA-P-----APHEILDLGRAGLVGLQ-DGKIQYWDSTTQCWKDA 638 (1774)
T ss_pred CceeeccccccCCccCCCCcccceeEeeccCCCCCCCC-C-----ChHHhhccccccceeec-cceEeeecCcchhhhhc
Confidence 78888888888888877777655543332222111100 0 01111234555677777 59999997644322111
Q ss_pred CCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCC-CCCCCCCCCC------Ccccc---eeecCCC
Q 011356 304 GEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY-CGALGHGDEI------DKTLP---EPLSSLK 373 (488)
Q Consensus 304 ~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~-~gqlG~~~~~------~~~~p---~~v~~~~ 373 (488)
.++ .|.++.-|.+....+-.+|+|-.---+. +..+-+++.. .+..| ..+..+.
T Consensus 639 ----------~~k-------d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~ 701 (1774)
T PF11725_consen 639 ----------GVK-------DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLE 701 (1774)
T ss_pred ----------cCc-------CHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCC
Confidence 110 1222222333333333344333322110 1111111111 11112 2355666
Q ss_pred CCcEEEEEe-eCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcC--ccCCCCEEEEEecCCeE-EEEEcCC
Q 011356 374 SHLAVQVCA-RKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD--SLRAHHVSQISTGLYHT-VVVTDRG 449 (488)
Q Consensus 374 ~~~i~~v~~-G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~--~~~~~~v~~v~~G~~ht-~~l~~~G 449 (488)
+..|..++. +.+++++|++.|++-+.= ..-.|+.++ .+ ...|+.++.=..|. +|++.+|
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~----------------k~g~p~~l~~~gl-~G~ik~l~lD~~~nL~Alt~~G 764 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ----------------KPGRPVPLSRPGL-SGEIKDLALDEKQNLYALTSTG 764 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc----------------CCCCCccCCCCCC-CcchhheeeccccceeEecCCC
Confidence 666666554 789999999999986521 112254444 34 34899999987765 5799999
Q ss_pred CEEEE
Q 011356 450 RLFGF 454 (488)
Q Consensus 450 ~v~~w 454 (488)
++|.-
T Consensus 765 ~Lf~~ 769 (1774)
T PF11725_consen 765 ELFRL 769 (1774)
T ss_pred ceeec
Confidence 99953
No 20
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.92 E-value=0.004 Score=58.30 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=49.4
Q ss_pred hcccccccCChHHHHHHHhcC---CCCcccccccccccccccCCCCCCCccccChhHHHHHHHhhhccccccCCchhhhh
Q 011356 5 YRLFSIEELPSHLIFEILTSG---RLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIE 81 (488)
Q Consensus 5 ~~~~~~~~lp~~i~~~~l~~~---~l~~~d~~~L~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 81 (488)
+-.+.|..||+|||..||-.+ .||.++|.+|++|||.|...+ .++.+++..|-+ +|.-+......+
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~---------R~~~lwR~aC~K--vW~~s~~~ln~~ 170 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA---------RDPELWRLACLK--VWQRSCIKLNPK 170 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH---------cChHHHHHHHHH--HHHHhhhccchh
Confidence 344567899999999998543 477788899999999998765 244455566664 232222222222
Q ss_pred hh-cccCCCcceee
Q 011356 82 LL-NRCNGNWKRVL 94 (488)
Q Consensus 82 ~~-~~~~~~~~~~~ 94 (488)
+. .....+|+.+.
T Consensus 171 ~~~sky~~SWR~Mf 184 (366)
T KOG2997|consen 171 ILQSKYYTSWREMF 184 (366)
T ss_pred hhhhHHHhHHHHHH
Confidence 22 34456777543
No 21
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.75 E-value=2.6 Score=43.14 Aligned_cols=107 Identities=26% Similarity=0.329 Sum_probs=69.0
Q ss_pred ecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-CeEEEEEcCCcEE-EecCCCCCc
Q 011356 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVY-SFGSGSNFC 300 (488)
Q Consensus 223 ~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-~~~~~lt~~G~v~-~wG~n~~gq 300 (488)
.|.....||..+|++|.= -|.... .+.-...+......++.+|++|. .-..+++.+|.|| --|-..+.+
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~--~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVD--RPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCC--CCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 455666778888888752 222222 22111222222224799999998 8889999999776 456666655
Q ss_pred cCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEE
Q 011356 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (488)
Q Consensus 301 lG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~ 346 (488)
.|..=. +...|+... .++.|+.|....-+||++|++|.
T Consensus 261 ~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 261 EGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred CCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEE
Confidence 554322 333444332 38899999888899999999986
No 22
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.10 E-value=2.8 Score=42.90 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=67.1
Q ss_pred eCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC-CeEEEEeCCCcEE-EEecCCCC
Q 011356 276 AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-EHVVALDSSGYVY-TWGKGYCG 353 (488)
Q Consensus 276 ~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-~h~~~lt~~G~vy-~wG~n~~g 353 (488)
.|.....||..+|.+|. +-|.......-.--++ .. ....+.+|++|. .-..+++.+|.|+ ..|-....
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~--i~-~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqN 259 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKV--IC-PYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQN 259 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeee--cC-CCCccceEeecCcceEEEEeeCCcEEEEecccccC
Confidence 55667778888888885 3333222222111111 11 112688999999 6667899999875 56665555
Q ss_pred CCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEE
Q 011356 354 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYG 398 (488)
Q Consensus 354 qlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~ 398 (488)
+.|..=. +..+|.... .++.|+.|...--+|+.+|.+|.
T Consensus 260 p~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 260 PEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred CCCchhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEE
Confidence 4443211 223343332 28999999999999999999986
No 23
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.68 E-value=2.1 Score=49.34 Aligned_cols=117 Identities=10% Similarity=0.086 Sum_probs=72.8
Q ss_pred ecCCCCCCCEEEEE-eCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEE-EEe
Q 011356 262 IAPLEEVGSVVQIA-AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVV-ALD 339 (488)
Q Consensus 262 i~~~~~~~~i~~i~-~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~-~lt 339 (488)
|..++ ...|..++ .+.++.++|++.|++-..= ..-.|+.++.-.. ...|.+|++-..|.+ |++
T Consensus 697 l~Gl~-~~~i~a~Avv~~~~fvald~qg~lt~h~-------------k~g~p~~l~~~gl-~G~ik~l~lD~~~nL~Alt 761 (1774)
T PF11725_consen 697 LEGLE-DRVITAFAVVNDNKFVALDDQGDLTAHQ-------------KPGRPVPLSRPGL-SGEIKDLALDEKQNLYALT 761 (1774)
T ss_pred ccCCC-cCcceeEEEEcCCceEEeccCCcccccc-------------CCCCCccCCCCCC-CcchhheeeccccceeEec
Confidence 34444 24566555 4678999999999876531 1112555543221 347999999988765 699
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCC
Q 011356 340 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTG 394 (488)
Q Consensus 340 ~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G 394 (488)
.+|+||.--.-..-..-.+ .......++|....+.+|..+....+|.+.+.-++
T Consensus 762 ~~G~Lf~~~k~~WQ~~~~~-~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 762 STGELFRLPKEAWQGNAEG-DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCCceeecCHHHhhCcccC-CccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 9999997432211111111 11123456666667778999999999998887655
No 24
>PF13013 F-box-like_2: F-box-like domain
Probab=88.18 E-value=0.15 Score=40.71 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=30.3
Q ss_pred cccccCChHHHHHHHhcCCCCccccccccccccccc
Q 011356 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFG 43 (488)
Q Consensus 8 ~~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~ 43 (488)
..+.|||.||++.|+- +++..++..|+.+|+.+.
T Consensus 20 ltl~DLP~ELl~~I~~--~C~~~~l~~l~~~~~~~r 53 (109)
T PF13013_consen 20 LTLLDLPWELLQLIFD--YCNDPILLALSRTCRAYR 53 (109)
T ss_pred cchhhChHHHHHHHHh--hcCcHHHHHHHHHHHHHH
Confidence 3588999999999999 899999999999999544
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.84 E-value=42 Score=35.96 Aligned_cols=127 Identities=10% Similarity=0.005 Sum_probs=67.0
Q ss_pred CCCCCEEEEEeCCce--eEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEE--EeCC
Q 011356 160 PSAAHVVQVSASENH--AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL--TIRG 235 (488)
Q Consensus 160 ~~~~~i~~i~~G~~~--~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~l--t~~G 235 (488)
|...-|-+++.+... ++.+...|.-.++|...-|||..-.--.....-.+--.+. ++..++-...-.++. .+||
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDg 372 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDG 372 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCC
Confidence 333345666666443 4666777888888888888887543211111111111111 233333333322222 3567
Q ss_pred cEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCC
Q 011356 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNF 299 (488)
Q Consensus 236 ~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~g 299 (488)
+|-.|-..+ ..-..-+.........+++..-.+..+...-||+|-+|-...|-
T Consensus 373 KVKvWn~~S-----------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 373 KVKVWNTQS-----------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cEEEEeccC-----------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 777773211 01111111122223566677777777888889999999876653
No 26
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=0.13 Score=56.29 Aligned_cols=132 Identities=14% Similarity=0.013 Sum_probs=85.6
Q ss_pred CCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCC--CCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEE
Q 011356 215 GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHG--DTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292 (488)
Q Consensus 215 ~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~--~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~ 292 (488)
..+++.|.+-.+..++|..+|++|.|-+...--|-.. -..+...|..-..-...++|+.+++..-..-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 4578888888888899999999999988765444321 11222223221111223789999999999999999999999
Q ss_pred ecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCC
Q 011356 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351 (488)
Q Consensus 293 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~ 351 (488)
|=. .+|.+-.... .-.........+..+++..|...|.++...|.-+|-||.--
T Consensus 453 WlD----EcgagV~fkL-a~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 453 WLD----ECGAGVAFKL-AHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred HHh----hhhhhhhhhh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 943 2222211110 00111112224456777888899999999999999999543
No 27
>PHA02713 hypothetical protein; Provisional
Probab=84.30 E-value=23 Score=37.55 Aligned_cols=21 Identities=5% Similarity=0.279 Sum_probs=14.1
Q ss_pred CCceeEEEEcCCcEEEEeCCC
Q 011356 171 SENHAAFVLQSGQVFTCGDNS 191 (488)
Q Consensus 171 G~~~~~~lt~~G~vy~wG~n~ 191 (488)
.+.+..+..-+|+||++|-..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~~ 361 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQN 361 (557)
T ss_pred hhhceeEEEECCEEEEECCcC
Confidence 444445556689999998643
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=83.69 E-value=37 Score=31.45 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=39.6
Q ss_pred CeEEEEe--cCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC--eEEEEEcCCcEEE
Q 011356 217 PCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYS 292 (488)
Q Consensus 217 ~i~~V~~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~--~~~~lt~~G~v~~ 292 (488)
+|..|.- -..+.+.=+.+|.|+.|--. .........|... ..|.+++...+ -..+.++.|+.|+
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~------~~~c~~~liPe~~------~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLG------ENSCTHELIPEDD------TSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEcc------CCccccccCCCCC------cceeeEEEcCCCcEEEEecCCccEEE
Confidence 3444443 33444555788999999432 2112222333222 46777777765 4567788999999
Q ss_pred ecC
Q 011356 293 FGS 295 (488)
Q Consensus 293 wG~ 295 (488)
|-.
T Consensus 194 W~l 196 (311)
T KOG0315|consen 194 WRL 196 (311)
T ss_pred EEc
Confidence 965
No 29
>PHA03098 kelch-like protein; Provisional
Probab=82.65 E-value=63 Score=34.02 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=15.3
Q ss_pred ccccCChHHHHHHHhcCCCCc
Q 011356 9 SIEELPSHLIFEILTSGRLSA 29 (488)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~l~~ 29 (488)
.+.+||++.+..+|.+-.|..
T Consensus 145 ~f~~l~~~~l~~ll~~~~L~v 165 (534)
T PHA03098 145 DFIYLSKNELIKILSDDKLNV 165 (534)
T ss_pred hhhcCCHHHHHHHhcCCCcCc
Confidence 456788888888888655543
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=82.24 E-value=42 Score=31.08 Aligned_cols=59 Identities=17% Similarity=0.355 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCe--EEEEeCCCcEEEEec
Q 011356 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH--VVALDSSGYVYTWGK 349 (488)
Q Consensus 278 ~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h--~~~lt~~G~vy~wG~ 349 (488)
..+.+.-+.+|.|++|-.... .......|. ....|.+++...+- .++.++.|+.|+|-.
T Consensus 136 QteLis~dqsg~irvWDl~~~------~c~~~liPe-------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGEN------SCTHELIPE-------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred cceEEeecCCCcEEEEEccCC------ccccccCCC-------CCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 456667788999999965432 111122222 22356666666554 456799999999976
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.03 E-value=0.67 Score=43.78 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=36.4
Q ss_pred cccCChHHHHHHHhcCCCCcccccccccccccccCCC-CCCCccccC
Q 011356 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH-GLYPQKFRS 55 (488)
Q Consensus 10 ~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~-~~~~~~~~~ 55 (488)
.+.||+||++.||. -|.-+||+....+||-|...+ +...|..+-
T Consensus 98 ~~slpDEill~IFs--~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD 142 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--CLCKKELLKVSGVCKRFYRLASDESLWQTLD 142 (419)
T ss_pred cccCCHHHHHHHHH--hccHHHHHHHHHHHHHHhhccccccceeeec
Confidence 47999999999999 899999999999999888755 445565433
No 32
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.66 E-value=64 Score=37.01 Aligned_cols=200 Identities=17% Similarity=0.156 Sum_probs=97.8
Q ss_pred eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCC-EEEEEeCCceeEEEEcCCcEEEEeCCCCC-cccCCCCCCce
Q 011356 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAH-VVQVSASENHAAFVLQSGQVFTCGDNSSF-CCGHRDTNRPI 204 (488)
Q Consensus 127 ~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~-i~~i~~G~~~~~~lt~~G~vy~wG~n~~g-qlG~~~~~~~~ 204 (488)
.|.++|.|=.++.+++-.-+..+.......+--|.... +-.| .|.++|...-+|+..|-...- +.+.......
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~- 171 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSIFNTS- 171 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccccccc-
Confidence 79999999999877775433322211111111111111 1112 488899888899988854421 1111111110
Q ss_pred eCCEEeccCCCCCeEEEEe-cCCeeEEE-EeCCcEEEEECCCC-----CccCCCC-------------CCCCCCceeecC
Q 011356 205 FRPRLVEALKGVPCKQVTA-GLNFTGFL-TIRGHVHTCGSNTH-----GQLGHGD-------------TLDRPTPKSIAP 264 (488)
Q Consensus 205 ~~p~~v~~~~~~~i~~V~~-G~~h~~~l-t~~G~vy~wG~n~~-----gqlG~~~-------------~~~~~~p~~i~~ 264 (488)
-+|+. |-+-.++. +++|+||.-|.+.. -|...+- ......|..+..
T Consensus 172 --------------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 172 --------------FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred --------------eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 22222 33333333 56667666665431 0111110 011224553333
Q ss_pred C-CCCCCEEEEEeCCCeEEE--EEcCCcEEEecCCCCCccCCCCC-----------CCCcCceeeeecccCCeeEEEEEe
Q 011356 265 L-EEVGSVVQIAAGPSYMLA--VTGNGVVYSFGSGSNFCLGHGEQ-----------HDELQPRAIQTFRRKGIHVVRVSA 330 (488)
Q Consensus 265 ~-~~~~~i~~i~~G~~~~~~--lt~~G~v~~wG~n~~gqlG~~~~-----------~~~~~p~~i~~~~~~~~~i~~i~~ 330 (488)
+ ...++|.+|+.+....+. +++.|.|-+|-....|+-+.-.- .+...|..-+. -..|++|+.
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~----f~~IvsI~~ 313 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSV----FFSIVSISP 313 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcc----cceeEEecc
Confidence 3 333689999999887665 56678666665544443322100 00011111111 124555543
Q ss_pred ------CCCeEEEEeCCC-cEEEEec
Q 011356 331 ------GDEHVVALDSSG-YVYTWGK 349 (488)
Q Consensus 331 ------g~~h~~~lt~~G-~vy~wG~ 349 (488)
-.-|.+|+|..| ++|.-|.
T Consensus 314 l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 314 LSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cCcccccceeEEEEecCCeEEEEecc
Confidence 345899999999 7887664
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.88 E-value=1e+02 Score=33.33 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=63.5
Q ss_pred ceEEEecCc--eeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCC-CCCEEEEEeCCceeEEEE--cCCcEEE
Q 011356 113 NMQITTGRY--HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSASENHAAFVL--QSGQVFT 186 (488)
Q Consensus 113 i~~i~~G~~--h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~-~~~i~~i~~G~~~~~~lt--~~G~vy~ 186 (488)
|.+++.+.+ .++.+ ..|.-.++|+..-|||..=.-... .--+.... ..+|..++-..+..++.| +||+|-.
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 334444532 23344 668889999999999875321110 00011110 124555555554444443 5777777
Q ss_pred EeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCC
Q 011356 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNT 244 (488)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~ 244 (488)
|-..+..++ .+ .-+.-.+...++.+.-.+..+...-||+|-+|--..
T Consensus 377 Wn~~SgfC~---------vT--FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 377 WNTQSGFCF---------VT--FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred EeccCceEE---------EE--eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 765552111 11 111223445566677777777778899999996443
No 34
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.37 E-value=12 Score=34.27 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCcEEEecCCC
Q 011356 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (488)
Q Consensus 269 ~~i~~i~~G~~~~~~lt~~G~v~~wG~n~ 297 (488)
.+++.+.|-..+.+++|.+|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 57888999999999999999999997544
No 35
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=2.8 Score=46.61 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=57.8
Q ss_pred CCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceE-cCccCCCCEEEEEecCCeEEEEEcCCCEE
Q 011356 374 SHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRI-LDSLRAHHVSQISTGLYHTVVVTDRGRLF 452 (488)
Q Consensus 374 ~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~-v~~~~~~~v~~v~~G~~ht~~l~~~G~v~ 452 (488)
..+++.|.+-++.-++|..+|++|.|-+...--|-.+-.. .....-|.. .-.+.+.+|+.+++..-..-++|++|+|-
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai-~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAI-NKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhc-ccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 4468888888888899999999999998775544322110 111111221 12455789999999999999999999999
Q ss_pred EEe
Q 011356 453 GFG 455 (488)
Q Consensus 453 ~wG 455 (488)
+|=
T Consensus 452 sWl 454 (3015)
T KOG0943|consen 452 SWL 454 (3015)
T ss_pred hHH
Confidence 994
No 36
>PLN02153 epithiospecifier protein
Probab=76.20 E-value=82 Score=30.89 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=12.4
Q ss_pred CeEEEEEcCCcEEEecCCC
Q 011356 279 SYMLAVTGNGVVYSFGSGS 297 (488)
Q Consensus 279 ~~~~~lt~~G~v~~wG~n~ 297 (488)
.|++++ .++++|++|-..
T Consensus 130 ~~~~~~-~~~~iyv~GG~~ 147 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGVS 147 (341)
T ss_pred eeEEEE-ECCEEEEECCcc
Confidence 566655 467999998643
No 37
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=74.74 E-value=91 Score=31.13 Aligned_cols=122 Identities=13% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCCCCCEEEEEeCCc-ee-EEEEcCCc-EEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC-CeeEEEEeC
Q 011356 159 FPSAAHVVQVSASEN-HA-AFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-NFTGFLTIR 234 (488)
Q Consensus 159 ~~~~~~i~~i~~G~~-~~-~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-~h~~~lt~~ 234 (488)
......+..|..|.. |. ++.+.||+ +|..+.. |.+. .+.......++.|..|. .+.++++.|
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~vs------------viD~~~~~~v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTVS------------VIDLATGKVVATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEEE------------EEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeEE------------EEECCcccEEEEEecCCCcceEEEcCC
Confidence 333445777877654 54 45677787 7877532 3222 23333344567777665 457888999
Q ss_pred CcEEEEECCCCCccCCCCCCCCCCceeecCC-----CCCCCEEEEEeCCC---eEEEEEcCCcEEEec
Q 011356 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL-----EEVGSVVQIAAGPS---YMLAVTGNGVVYSFG 294 (488)
Q Consensus 235 G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~-----~~~~~i~~i~~G~~---~~~~lt~~G~v~~wG 294 (488)
|+...-++...+++-.-+......-..|+.. ....++..|.+... +.+.+.+.+++|.--
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 9866555444444432221111111111110 01145666655332 566777788888753
No 38
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=72.96 E-value=79 Score=29.25 Aligned_cols=80 Identities=15% Similarity=0.312 Sum_probs=41.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCcEEEecCCCCCc-cCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEE
Q 011356 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC-LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (488)
Q Consensus 269 ~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gq-lG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~w 347 (488)
.+|-.++.-..|.+. .-+|.||.|-.|+.-. ++....-....|.+....+-+.++-..+--..+..+.---|+.+|+|
T Consensus 63 gpiy~~~f~d~~Lls-~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLS-GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred CCeeeeeeehhheee-ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 466666665555443 3459999999988755 44433333445555533322222222222222333333356677777
Q ss_pred ec
Q 011356 348 GK 349 (488)
Q Consensus 348 G~ 349 (488)
-.
T Consensus 142 dl 143 (325)
T KOG0649|consen 142 DL 143 (325)
T ss_pred Ee
Confidence 53
No 39
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=72.37 E-value=72 Score=33.97 Aligned_cols=197 Identities=12% Similarity=0.134 Sum_probs=87.3
Q ss_pred ceeEeeeCCcEEEEeCCCCCCCCCCCCCce-eeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCC
Q 011356 121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQ-CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRD 199 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~~GqLG~g~~~~~-~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~ 199 (488)
.+++++-+|.||+.|--+.| ....... .-.|..-.+. .+..+...+....+..-+|.||+-|--+ |+-....
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~---~~~l~~ve~YD~~~~~W~---~~a~M~~~R~~~~v~~l~g~iYavGG~d-g~~~l~s 397 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSG---SDRLSSVERYDPRTNQWT---PVAPMNTKRSDFGVAVLDGKLYAVGGFD-GEKSLNS 397 (571)
T ss_pred cccEEEECCEEEEEccccCC---CcccceEEEecCCCCcee---ccCCccCccccceeEEECCEEEEEeccc-ccccccc
Confidence 34444488899999965432 1111110 0011111111 2333444454555556689999997544 2212111
Q ss_pred CCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCC-----CCceeecCCCCCCCEEEE
Q 011356 200 TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-----PTPKSIAPLEEVGSVVQI 274 (488)
Q Consensus 200 ~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~-----~~p~~i~~~~~~~~i~~i 274 (488)
.....|..-+. ..+....-......+..-+|+||+.|......--. ..... .....+...
T Consensus 398 --vE~YDp~~~~W---~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l-~sve~YDP~t~~W~~~~~M--------- 462 (571)
T KOG4441|consen 398 --VECYDPVTNKW---TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL-NSVECYDPETNTWTLIAPM--------- 462 (571)
T ss_pred --EEEecCCCCcc---cccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc-ceEEEEcCCCCceeecCCc---------
Confidence 12222221111 00111112233334445689999998643322000 00000 111112111
Q ss_pred EeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEE---EEeCCCeEEEEeCCCcEEEEec
Q 011356 275 AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR---VSAGDEHVVALDSSGYVYTWGK 349 (488)
Q Consensus 275 ~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~---i~~g~~h~~~lt~~G~vy~wG~ 349 (488)
..-..+.-+..-++.||+.|-.+. + .....++.+.+...+.+. +.....+.-+..-++++|+-|-
T Consensus 463 ~~~R~~~g~a~~~~~iYvvGG~~~-~---------~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 463 NTRRSGFGVAVLNGKIYVVGGFDG-T---------SALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ccccccceEEEECCEEEEECCccC-C---------CccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 111222335556889999986442 1 011113333322223333 3345566666677889999885
No 40
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.78 E-value=22 Score=32.62 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCeeEEEEeCCcEEEEEC
Q 011356 215 GVPCKQVTAGLNFTGFLTIRGHVHTCGS 242 (488)
Q Consensus 215 ~~~i~~V~~G~~h~~~lt~~G~vy~wG~ 242 (488)
+.++..+.|-..+.++||.+|.+|+|=-
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl 39 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNL 39 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 4467889999999999999999999943
No 41
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=70.35 E-value=1.3e+02 Score=30.50 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=29.7
Q ss_pred eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEE--cCCcEEEEeCCC
Q 011356 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVL--QSGQVFTCGDNS 191 (488)
Q Consensus 127 ~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt--~~G~vy~wG~n~ 191 (488)
..|.+|.|=-+. |.|=.- -..--..|..+....+-.+++| +||.|.+|--.+
T Consensus 101 i~g~lYlWelss-G~LL~v------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 101 ISGNLYLWELSS-GILLNV------------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred ccCcEEEEEecc-ccHHHH------------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 689999997553 222110 0011125666666666666665 588899886443
No 42
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=69.91 E-value=1.2e+02 Score=30.18 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=12.6
Q ss_pred ceeEEEEcCCcEEEEeCC
Q 011356 173 NHAAFVLQSGQVFTCGDN 190 (488)
Q Consensus 173 ~~~~~lt~~G~vy~wG~n 190 (488)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 355554468999999864
No 43
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=68.36 E-value=1.4e+02 Score=32.16 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=22.6
Q ss_pred CCCeEEEEecCC----eeEEEEeCCcEEEEE
Q 011356 215 GVPCKQVTAGLN----FTGFLTIRGHVHTCG 241 (488)
Q Consensus 215 ~~~i~~V~~G~~----h~~~lt~~G~vy~wG 241 (488)
...+..|+||.. .+++||..|.|.-|-
T Consensus 217 ~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 217 FNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred cchhhhhhhcCcccccceEEEecccceeeec
Confidence 345789999988 899999999988773
No 44
>PLN02153 epithiospecifier protein
Probab=68.15 E-value=1.3e+02 Score=29.57 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=12.6
Q ss_pred ceeEeeeCCcEEEEeCC
Q 011356 121 YHTLLISNSSVFSCGSS 137 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (488)
.|+++..+++||++|-.
T Consensus 78 ~~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGR 94 (341)
T ss_pred ceEEEEECCEEEEECCC
Confidence 35555578999999864
No 45
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=68.09 E-value=77 Score=29.98 Aligned_cols=137 Identities=19% Similarity=0.243 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC---CeEEEEeCCCcEEEEecC-CCC
Q 011356 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKG-YCG 353 (488)
Q Consensus 278 ~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n-~~g 353 (488)
.-|-++...+|.||.-+... +.+|+-+ ...-+++.+..|. -|.+++..||..|.+-.. ..+
T Consensus 63 ap~dvapapdG~VWft~qg~-gaiGhLd--------------P~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGT-GAIGHLD--------------PATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CccccccCCCCceEEecCcc-ccceecC--------------CCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeE
Confidence 45778888999999755432 3344321 1112344444433 488999999999987543 222
Q ss_pred CCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCC-CCCCCCCCCCCCCceecceEcCccCCCCE
Q 011356 354 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG-FGSLGFPDRGVSDKVLRPRILDSLRAHHV 432 (488)
Q Consensus 354 qlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~-~gqLG~~~~~~~~~~~~P~~v~~~~~~~v 432 (488)
.++..+-.....|.. .+.+-+.-.+.++...|.||-.|++. +|.|--.. .. . +|
T Consensus 128 R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~---~~--i-----------~v 182 (353)
T COG4257 128 RLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR---NV--I-----------SV 182 (353)
T ss_pred EecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCccc---Cc--e-----------ee
Confidence 232222121222222 22233466788999999999999743 44432111 00 0 01
Q ss_pred EEE-EecCCeEEEEEcCCCEEEE
Q 011356 433 SQI-STGLYHTVVVTDRGRLFGF 454 (488)
Q Consensus 433 ~~v-~~G~~ht~~l~~~G~v~~w 454 (488)
-.+ .-+.-.-++.+-||+||--
T Consensus 183 fpaPqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 183 FPAPQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred eccCCCCCCcceEECCCCcEEEE
Confidence 111 1234566788899999976
No 46
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=67.77 E-value=10 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCEEEEEeCC-ceeEEEEcCCcEEEE
Q 011356 163 AHVVQVSASE-NHAAFVLQSGQVFTC 187 (488)
Q Consensus 163 ~~i~~i~~G~-~~~~~lt~~G~vy~w 187 (488)
..+++|++|. ....+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4799999999 888899999999853
No 47
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=66.50 E-value=13 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.2
Q ss_pred CeEEEEecC-CeeEEEEeCCcEEEE
Q 011356 217 PCKQVTAGL-NFTGFLTIRGHVHTC 240 (488)
Q Consensus 217 ~i~~V~~G~-~h~~~lt~~G~vy~w 240 (488)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 679999999 888999999999864
No 48
>PRK05560 DNA gyrase subunit A; Validated
Probab=64.55 E-value=2.4e+02 Score=31.54 Aligned_cols=217 Identities=14% Similarity=0.152 Sum_probs=107.5
Q ss_pred EeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC-----CeeEEEEeCCcEEEEECC
Q 011356 169 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSN 243 (488)
Q Consensus 169 ~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-----~h~~~lt~~G~vy~wG~n 243 (488)
+....+.+++|+.|++|..-...--..+....+... ...+....+.+|+.+.+-. ...+++|++|.+.-.-..
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i--~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPI--VNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEH--HHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 344566889999999999865542222211111111 1122333456677776644 346788899977654322
Q ss_pred CCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccC
Q 011356 244 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (488)
Q Consensus 244 ~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~ 321 (488)
.+-.... .......+.+...++.+... ..+.+++|++|++|.+-...-...|... ..+.+..+. .
T Consensus 623 ~~~~~~r-------~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~-----~Gv~~i~L~-~ 689 (805)
T PRK05560 623 EFSNIRS-------NGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA-----RGVRGIKLR-E 689 (805)
T ss_pred Hhhhccc-------CCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc-----CCcccccCC-C
Confidence 2211000 01111112222445544433 4579999999999988654433332211 122222332 3
Q ss_pred CeeEEEEEeCC---CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCC--CCcEEEE--EeeCCeEEEEEcCC
Q 011356 322 GIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQV--CARKRKTFVLVDTG 394 (488)
Q Consensus 322 ~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~v--~~G~~~t~~lt~~G 394 (488)
+.+|+.+..-. .+.+++|+.|.+...-.+.+-....+. .......+. +..++.+ ..++...+++|++|
T Consensus 690 ~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~-----kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G 764 (805)
T PRK05560 690 GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG-----KGVITIKITEKNGKLVGALPVDDDDEIMLITDSG 764 (805)
T ss_pred CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC-----CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCC
Confidence 44566655432 256778888876665433221111100 011111111 1233332 23455678888999
Q ss_pred cEEEEEcCCCC
Q 011356 395 SVYGFGWMGFG 405 (488)
Q Consensus 395 ~vy~wG~n~~g 405 (488)
++.-+-.++--
T Consensus 765 ~~lrf~~~eI~ 775 (805)
T PRK05560 765 KLIRTRVSEIS 775 (805)
T ss_pred eEEEEEHHHCC
Confidence 88877654433
No 49
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=63.16 E-value=2.5e+02 Score=31.33 Aligned_cols=215 Identities=11% Similarity=0.097 Sum_probs=104.5
Q ss_pred EeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec-----CCeeEEEEeCCcEEEEECC
Q 011356 169 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGSN 243 (488)
Q Consensus 169 ~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G-----~~h~~~lt~~G~vy~wG~n 243 (488)
+....+.+++|+.|++|..-...--..+....+.... ..+....+.+|+.+.+- ....+++|++|.+--.-.+
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~--~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~ 620 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIV--NLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT 620 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHH--HhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH
Confidence 3445668899999999998433322211111111111 12233345667666552 2356778888877655332
Q ss_pred CCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccC
Q 011356 244 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (488)
Q Consensus 244 ~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~ 321 (488)
.+-... . .......+.+...++.+.. ..++.+++|++|++|..-...-...|... ..+.+..+. .
T Consensus 621 ~~~~~~------r-~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-----~Gv~~i~L~-~ 687 (800)
T TIGR01063 621 EFSNIR------S-NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA-----RGVRGIKLK-N 687 (800)
T ss_pred Hhhhhc------c-CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC-----CCeecccCC-C
Confidence 221100 0 0111111112234554433 34579999999999988665543333221 122222222 3
Q ss_pred CeeEEEEEeC--CCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCC--CCcEEEEE--eeCCeEEEEEcCCc
Q 011356 322 GIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVC--ARKRKTFVLVDTGS 395 (488)
Q Consensus 322 ~~~i~~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~v~--~G~~~t~~lt~~G~ 395 (488)
+.+|+.+..- ..+.+++|+.|.+...-...+-....+.. ......+. +..++.+. ..+...+++|++|.
T Consensus 688 ~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~k-----Gv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~ 762 (800)
T TIGR01063 688 EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGK-----GVKSIKITDRNGQVVGAIAVDDDDELMLITSAGK 762 (800)
T ss_pred CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCc-----ceEEEEccCCCCeEEEEEEecCCCeEEEEecCCe
Confidence 3456665542 33567788998777664332221111000 01111111 12333322 23445788888898
Q ss_pred EEEEEcCC
Q 011356 396 VYGFGWMG 403 (488)
Q Consensus 396 vy~wG~n~ 403 (488)
+.-+-.++
T Consensus 763 ~lrf~~~e 770 (800)
T TIGR01063 763 LIRTSVQD 770 (800)
T ss_pred EEEeeHhh
Confidence 87766444
No 50
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=62.73 E-value=1.8e+02 Score=29.47 Aligned_cols=153 Identities=13% Similarity=0.177 Sum_probs=76.1
Q ss_pred eEEEEecC--CeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCC-CCCCEEEEEeCCC--eEEEEEcCCcEEE
Q 011356 218 CKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAGPS--YMLAVTGNGVVYS 292 (488)
Q Consensus 218 i~~V~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~-~~~~i~~i~~G~~--~~~~lt~~G~v~~ 292 (488)
|..+++.. ++.++=+..|+||.|--++ |.| +..+. --..|..+....+ |.+--.+||.|.+
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelss-G~L-------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSS-GIL-------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEecc-ccH-------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEE
Confidence 45555433 3334445789999995432 211 11110 0023444443333 4444447888888
Q ss_pred ecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCe--EEEE--eCCCcEEEEecCCCCCCCCCCCCCccccee
Q 011356 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH--VVAL--DSSGYVYTWGKGYCGALGHGDEIDKTLPEP 368 (488)
Q Consensus 293 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h--~~~l--t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 368 (488)
|=.-+-- ...+...|.++-.+......|+++.+|..- +.++ ..|..+-.|-... +. .-..
T Consensus 150 W~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~-----LLlt 213 (476)
T KOG0646|consen 150 WLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GV-----LLLT 213 (476)
T ss_pred EEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ce-----eeEE
Confidence 8543211 112222555566666666778888887663 2222 2344444443211 10 0111
Q ss_pred ecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEE
Q 011356 369 LSSLKSHLAVQVCARKRKTFVLVDTGSVYGFG 400 (488)
Q Consensus 369 v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG 400 (488)
+........+.+.-++.+.++=+++|.+|..=
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 11122223455666788888888999988643
No 51
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=60.14 E-value=1.1e+02 Score=28.91 Aligned_cols=139 Identities=16% Similarity=0.151 Sum_probs=68.8
Q ss_pred ceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCC-CCCcccCC
Q 011356 121 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN-SSFCCGHR 198 (488)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n-~~gqlG~~ 198 (488)
-|-++. .||.||.-++. .|.+|+-+.... +...+++.... .-|.+++..||..|.+-.. .-+.++..
T Consensus 64 p~dvapapdG~VWft~qg-~gaiGhLdP~tG--ev~~ypLg~Ga--------~Phgiv~gpdg~~Witd~~~aI~R~dpk 132 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQG-TGAIGHLDPATG--EVETYPLGSGA--------SPHGIVVGPDGSAWITDTGLAIGRLDPK 132 (353)
T ss_pred ccccccCCCCceEEecCc-cccceecCCCCC--ceEEEecCCCC--------CCceEEECCCCCeeEecCcceeEEecCc
Confidence 344455 89999976654 344454322221 12223332222 2456666677777766332 21222211
Q ss_pred CCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECC-CCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC
Q 011356 199 DTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN-THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG 277 (488)
Q Consensus 199 ~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n-~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G 277 (488)
+. .....|.. .+.+-+.-.+.+++..|.||..|.+ .+|+|--.......-|.. --+
T Consensus 133 t~-evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-------------qG~ 189 (353)
T COG4257 133 TL-EVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-------------QGG 189 (353)
T ss_pred cc-ceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-------------CCC
Confidence 11 00111111 2333455667889999999999873 345442211111111100 123
Q ss_pred CCeEEEEEcCCcEEEe
Q 011356 278 PSYMLAVTGNGVVYSF 293 (488)
Q Consensus 278 ~~~~~~lt~~G~v~~w 293 (488)
.-.-++.|-+|+||.-
T Consensus 190 gpyGi~atpdGsvwya 205 (353)
T COG4257 190 GPYGICATPDGSVWYA 205 (353)
T ss_pred CCcceEECCCCcEEEE
Confidence 4467889999999976
No 52
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=59.99 E-value=2e+02 Score=29.15 Aligned_cols=75 Identities=13% Similarity=-0.036 Sum_probs=44.0
Q ss_pred EeeCCCCCCEEEEEeC-CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEec--cCCCCCeEEEEecCCeeEEEE
Q 011356 156 RINFPSAAHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE--ALKGVPCKQVTAGLNFTGFLT 232 (488)
Q Consensus 156 ~~~~~~~~~i~~i~~G-~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~--~~~~~~i~~V~~G~~h~~~lt 232 (488)
.+.+.. .+|+.+.-- ..+.++|.++|.++... .+|.. ....+..+. ...+.++-.+..+.+=.++||
T Consensus 75 ~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt 144 (410)
T PF04841_consen 75 SIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT 144 (410)
T ss_pred EEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-------eechhhhccccCcccccccccccCCCCEEEEC
Confidence 355555 577777654 46778999999988762 32322 111122221 111223444455556678899
Q ss_pred eCCcEEEE
Q 011356 233 IRGHVHTC 240 (488)
Q Consensus 233 ~~G~vy~w 240 (488)
.++++|.-
T Consensus 145 ~~~~~~~v 152 (410)
T PF04841_consen 145 GNNRFYVV 152 (410)
T ss_pred CCCeEEEE
Confidence 99999987
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=59.95 E-value=1.5e+02 Score=27.64 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=42.2
Q ss_pred ceeCCEEeccCCCCCeEEE-EecCCeeEEE-EeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC-CC
Q 011356 203 PIFRPRLVEALKGVPCKQV-TAGLNFTGFL-TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PS 279 (488)
Q Consensus 203 ~~~~p~~v~~~~~~~i~~V-~~G~~h~~~l-t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G-~~ 279 (488)
+...|..+..-.+. |+.+ -|-..|+++- ++++.|-.|-.. +-+.+..+.-..+|.+.... ..
T Consensus 132 p~App~E~~ghtg~-Ir~v~wc~eD~~iLSSadd~tVRLWD~r--------------Tgt~v~sL~~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 132 PKAPPKEISGHTGG-IRTVLWCHEDKCILSSADDKTVRLWDHR--------------TGTEVQSLEFNSPVTSLEVSQDG 196 (334)
T ss_pred CCCCchhhcCCCCc-ceeEEEeccCceEEeeccCCceEEEEec--------------cCcEEEEEecCCCCcceeeccCC
Confidence 33445555443332 4443 5666676655 678889988432 11222222111333333332 23
Q ss_pred eEEEEEcCCcEEEecCCCCCcc
Q 011356 280 YMLAVTGNGVVYSFGSGSNFCL 301 (488)
Q Consensus 280 ~~~~lt~~G~v~~wG~n~~gql 301 (488)
+.+.+...+.|--|-.+.++.|
T Consensus 197 ~ilTia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 197 RILTIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred CEEEEecCceeEEeccccccce
Confidence 4445555567777877766544
No 54
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=59.51 E-value=1.9e+02 Score=28.68 Aligned_cols=116 Identities=8% Similarity=-0.031 Sum_probs=54.6
Q ss_pred EeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcC-CcEEEEEcCCCCCC
Q 011356 329 SAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDT-GSVYGFGWMGFGSL 407 (488)
Q Consensus 329 ~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~-G~vy~wG~n~~gqL 407 (488)
+.....-++++.+|+||..-....+ .....|..+..... +-....-|...-++++.+ +++|+--.. .
T Consensus 202 ~~~dg~~~~vs~eG~V~~id~~~~~-------~~~~~~~~~~~~~~-~~~~wrP~g~q~ia~~~dg~~lyV~~~~-~--- 269 (352)
T TIGR02658 202 SNKSGRLVWPTYTGKIFQIDLSSGD-------AKFLPAIEAFTEAE-KADGWRPGGWQQVAYHRARDRIYLLADQ-R--- 269 (352)
T ss_pred EcCCCcEEEEecCCeEEEEecCCCc-------ceecceeeeccccc-cccccCCCcceeEEEcCCCCEEEEEecC-C---
Confidence 4445577778888888886532111 01111111111000 001233445555788755 567763310 0
Q ss_pred CCCCCCCCCceecceEcCccCCCCEEEEEec-CCeEEEEEcCCCEEEEeCCC
Q 011356 408 GFPDRGVSDKVLRPRILDSLRAHHVSQISTG-LYHTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 408 G~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G-~~ht~~l~~~G~v~~wG~n~ 458 (488)
+.++..... ..-..++.-..+.+..|..| .-+.++++.||+.+.+-.|.
T Consensus 270 ~~~thk~~~--~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 270 AKWTHKTAS--RFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred ccccccCCC--CEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence 001110011 11122222334466777777 45688999999966665553
No 55
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=55.09 E-value=1.3e+02 Score=28.35 Aligned_cols=159 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred CceeEeeeCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCC----CEEEEEeC--CceeEEEEcCCcEEEEeCCCCC
Q 011356 120 RYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA----HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSF 193 (488)
Q Consensus 120 ~~h~~~l~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~----~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~g 193 (488)
..|+++..++++|.|| |..++...++..-........ .|.-..-| ..|++.+-.+ .+|.+|
T Consensus 80 YGHtvV~y~d~~yvWG-------GRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFG----- 146 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWG-------GRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGN-QMYIFG----- 146 (392)
T ss_pred cCceEEEEcceEEEEc-------CccCcccccceeeeeccccccccccceeeecCCccCCceeeEECc-EEEEec-----
Q ss_pred cccCCCCCCceeCCEEeccCCCCCeEEEEe-------cCCeeEEEEeCCcEEEEEC--CCCCccCCCCCCCCCCceeecC
Q 011356 194 CCGHRDTNRPIFRPRLVEALKGVPCKQVTA-------GLNFTGFLTIRGHVHTCGS--NTHGQLGHGDTLDRPTPKSIAP 264 (488)
Q Consensus 194 qlG~~~~~~~~~~p~~v~~~~~~~i~~V~~-------G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~p~~i~~ 264 (488)
|..+.....+.-..+-.+.....+.|.. -..|++.+-+ +..|.+|. ..+|-.-...+.-..+-..+..
T Consensus 147 --Gye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~ 223 (392)
T KOG4693|consen 147 --GYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDL 223 (392)
T ss_pred --ChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEec
Q ss_pred CCCC----CCEEEEEeCCCeEEEEEcCCcEEEec
Q 011356 265 LEEV----GSVVQIAAGPSYMLAVTGNGVVYSFG 294 (488)
Q Consensus 265 ~~~~----~~i~~i~~G~~~~~~lt~~G~v~~wG 294 (488)
-.+. ..-..+--|...--..-.+|++|.+|
T Consensus 224 ~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FG 257 (392)
T KOG4693|consen 224 ATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFG 257 (392)
T ss_pred cccccccCCCCCcCCCcccccceEEEcceEEEec
No 56
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=55.05 E-value=41 Score=35.85 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=21.3
Q ss_pred ccCCCCEEEEEecCC----eEEEEEcCCCEEEE
Q 011356 426 SLRAHHVSQISTGLY----HTVVVTDRGRLFGF 454 (488)
Q Consensus 426 ~~~~~~v~~v~~G~~----ht~~l~~~G~v~~w 454 (488)
.+.+....+|+||-. .+++|+..|.+.-|
T Consensus 214 ~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 214 NLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred ccccchhhhhhhcCcccccceEEEecccceeee
Confidence 344567888999976 89999997665544
No 57
>PHA02713 hypothetical protein; Provisional
Probab=54.82 E-value=1.3e+02 Score=31.87 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=11.1
Q ss_pred EeeeCCcEEEEeCCC
Q 011356 124 LLISNSSVFSCGSSL 138 (488)
Q Consensus 124 ~~l~~g~vy~wG~n~ 138 (488)
++.-+|+||++|-..
T Consensus 347 ~~~~~g~IYviGG~~ 361 (557)
T PHA02713 347 LAVIDDTIYAIGGQN 361 (557)
T ss_pred EEEECCEEEEECCcC
Confidence 333789999999753
No 58
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=53.83 E-value=3.6e+02 Score=30.16 Aligned_cols=217 Identities=13% Similarity=0.132 Sum_probs=106.2
Q ss_pred EecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCc--eeecCCCCCCCEEEEEeC-----CCeEEEEEcCCcEEEec
Q 011356 222 TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP--KSIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFG 294 (488)
Q Consensus 222 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p--~~i~~~~~~~~i~~i~~G-----~~~~~~lt~~G~v~~wG 294 (488)
+....+.+++|+.|++|..-... +-.......-.| ..+. +...++|+.+.+- ....+++|++|.+.-.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~---IP~~~r~~~G~~i~~ll~-L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQ---IPEASRTAKGKPIVNLLP-LQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhh---CcCCCcCCCCcCHHHhcc-CCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 34556678889999999983322 111111111111 1122 3334678777762 23578889999777654
Q ss_pred CCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEe--CCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCccccee-ecC
Q 011356 295 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEP-LSS 371 (488)
Q Consensus 295 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~-v~~ 371 (488)
.+.+-... . .-.....+.. +..++.+.. ...+.+++|++|++|.+-...--..|.... ... +..
T Consensus 619 l~~~~~~~------r-~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----Gv~~i~L 685 (800)
T TIGR01063 619 LTEFSNIR------S-NGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----GVRGIKL 685 (800)
T ss_pred hHHhhhhc------c-CCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----CeecccC
Confidence 33321100 0 0111111111 223444333 334678899999999986654433332221 111 222
Q ss_pred CCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccC--CCCEEEEE--ecCCeEEEE
Q 011356 372 LKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR--AHHVSQIS--TGLYHTVVV 445 (488)
Q Consensus 372 ~~~~~i~~v~~G--~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~--~~~v~~v~--~G~~ht~~l 445 (488)
-.+.+|+.+..- ..+.+++|++|.+.-.=-.++-....+. +....-.+. +..++.+. ......+++
T Consensus 686 ~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~--------kGv~~ikl~~~~d~lv~~~~v~~~~~v~li 757 (800)
T TIGR01063 686 KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG--------KGVKSIKITDRNGQVVGAIAVDDDDELMLI 757 (800)
T ss_pred CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC--------cceEEEEccCCCCeEEEEEEecCCCeEEEE
Confidence 245567666543 3356778888876655422221111100 011111111 12333322 234568889
Q ss_pred EcCCCEEEEeCCCCCCCC
Q 011356 446 TDRGRLFGFGDNERAQLG 463 (488)
Q Consensus 446 ~~~G~v~~wG~n~~GqLG 463 (488)
+++|.+..+-.++--..|
T Consensus 758 T~~G~~lrf~~~eI~~~g 775 (800)
T TIGR01063 758 TSAGKLIRTSVQDVSEQG 775 (800)
T ss_pred ecCCeEEEeeHhhCCccc
Confidence 999998877665544333
No 59
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.35 E-value=2.9e+02 Score=32.10 Aligned_cols=208 Identities=16% Similarity=0.128 Sum_probs=102.8
Q ss_pred eEEEEcCCcEEEEeCCCCCcccCCCCCC-ceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCC-CccCCCC
Q 011356 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNR-PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH-GQLGHGD 252 (488)
Q Consensus 175 ~~~lt~~G~vy~wG~n~~gqlG~~~~~~-~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~-gqlG~~~ 252 (488)
-+.+|-|.++|.|-.+..+++..-+... .+..-..++.-.++.+-.| .|.++|..--+|+..|-... .+.+.+.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 3678999999999988866654333211 1111111111122222222 58888888888888875221 1111111
Q ss_pred CCCCCCceeecCCCCCCCEEEEEe-CCCeEEEE-EcCCcEEEecCCCC-----CccCCCC-------------CCCCcCc
Q 011356 253 TLDRPTPKSIAPLEEVGSVVQIAA-GPSYMLAV-TGNGVVYSFGSGSN-----FCLGHGE-------------QHDELQP 312 (488)
Q Consensus 253 ~~~~~~p~~i~~~~~~~~i~~i~~-G~~~~~~l-t~~G~v~~wG~n~~-----gqlG~~~-------------~~~~~~p 312 (488)
.. ..-+|+. |-+-.++. +++|+||.-|.+.. -|...+= ......|
T Consensus 168 f~---------------~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 168 FN---------------TSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred cc---------------cceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 11 1122333 33333333 67777777766541 1111110 0112245
Q ss_pred eeeeecccCCeeEEEEEeCCCeEEE--EeCCCcEEEEecCCCCCCCCCCCCC---------cccceeecCCCCCcEEEEE
Q 011356 313 RAIQTFRRKGIHVVRVSAGDEHVVA--LDSSGYVYTWGKGYCGALGHGDEID---------KTLPEPLSSLKSHLAVQVC 381 (488)
Q Consensus 313 ~~i~~~~~~~~~i~~i~~g~~h~~~--lt~~G~vy~wG~n~~gqlG~~~~~~---------~~~p~~v~~~~~~~i~~v~ 381 (488)
..+..+......|.+|+......+. +++.|.|=+|-....|+-+.-.... ...-..+....-..|++|+
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSIS 312 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEec
Confidence 5222221334579999998887764 6788988777665555544311100 0000011111112344443
Q ss_pred e------eCCeEEEEEcCC-cEEEEEc
Q 011356 382 A------RKRKTFVLVDTG-SVYGFGW 401 (488)
Q Consensus 382 ~------G~~~t~~lt~~G-~vy~wG~ 401 (488)
. -+-|.+|+|..| ++|.=|+
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEecc
Confidence 3 467889999887 4776664
No 60
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=53.29 E-value=2.4e+02 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=13.4
Q ss_pred CeEEEEEcCCcEEEecCC
Q 011356 279 SYMLAVTGNGVVYSFGSG 296 (488)
Q Consensus 279 ~~~~~lt~~G~v~~wG~n 296 (488)
.|+++...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466665578999999864
No 61
>PHA03098 kelch-like protein; Provisional
Probab=51.37 E-value=1.9e+02 Score=30.32 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=13.3
Q ss_pred ceeEeeeCCcEEEEeCCC
Q 011356 121 YHTLLISNSSVFSCGSSL 138 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (488)
.|+++..++++|++|-..
T Consensus 335 ~~~~~~~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTVFNNRIYVIGGIY 352 (534)
T ss_pred cceEEEECCEEEEEeCCC
Confidence 455555889999999653
No 62
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=50.31 E-value=4e+02 Score=29.65 Aligned_cols=148 Identities=16% Similarity=0.060 Sum_probs=0.0
Q ss_pred cCCeeEEEEeCCcEEEEECCCCCccCCCCCCCC-CCceeec-CCCCCCCEEEEEeCCCeEEEEEcCC--cEEEecCCCCC
Q 011356 224 GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNG--VVYSFGSGSNF 299 (488)
Q Consensus 224 G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~-~~p~~i~-~~~~~~~i~~i~~G~~~~~~lt~~G--~v~~wG~n~~g 299 (488)
+....++++.+|+ +.+=.+..|-.-.-..... ..|..|. .- ..|..|+|-.+|.+.-++++ .+|.++....+
T Consensus 14 ~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g---~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 14 GGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETIDISG---ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred CceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhhccC---ceeEEEeecccceEEeeccceEEEeeCCCCCcc
Q ss_pred ccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEE
Q 011356 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQ 379 (488)
Q Consensus 300 qlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 379 (488)
.|..=..-.-..+++.-+|+.-+.|..+..--=....+....-.....-....-++
T Consensus 90 ------------------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 90 ------------------------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred ------------------------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Q ss_pred EEeeCCeEEEEEcCCcEEEE
Q 011356 380 VCARKRKTFVLVDTGSVYGF 399 (488)
Q Consensus 380 v~~G~~~t~~lt~~G~vy~w 399 (488)
...-..+-++.+-||+|++|
T Consensus 146 ~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred EcCCCCEEEEEecCceEEEE
No 63
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=50.26 E-value=1e+02 Score=32.82 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=32.3
Q ss_pred EEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeC
Q 011356 389 VLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGD 456 (488)
Q Consensus 389 ~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~ 456 (488)
+.+-++.||+.|-.+. +.... ......|.. .+-..+..+.....+..+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~----~VE~ydp~~---~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALS----SVERYDPET---NQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccc----eEEEEcCCC---CceeEcccCccccccccEEEECCEEEEEec
Confidence 5556899999994432 11100 111111211 111223334556677777778899999975
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=46.11 E-value=3.1e+02 Score=27.12 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.1
Q ss_pred CCeEEEEEcCCCEEEE
Q 011356 439 LYHTVVVTDRGRLFGF 454 (488)
Q Consensus 439 ~~ht~~l~~~G~v~~w 454 (488)
+.+.++.+.||+||+|
T Consensus 361 ~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 361 GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCceEEEe
Confidence 3568888899999986
No 65
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=44.76 E-value=12 Score=30.07 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.3
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccc
Q 011356 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTF 42 (488)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f 42 (488)
.+.++|.++|.-||. .++|..|..||..|-.+
T Consensus 3 dvG~~py~ll~piL~--~~~~~QL~~iE~~np~l 34 (109)
T PF06881_consen 3 DVGDVPYHLLRPILE--KCSPEQLRRIEDNNPHL 34 (109)
T ss_pred ccCCCCHHHHHHHHc--cCCHHHHHHHHHhCCCc
Confidence 467999999999999 67999999999988653
No 66
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=44.46 E-value=3.4e+02 Score=27.10 Aligned_cols=150 Identities=14% Similarity=0.128 Sum_probs=73.5
Q ss_pred ceEEEecCc-eeEee--eCCc-EEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCC-ceeEEEEcCCcEEEE
Q 011356 113 NMQITTGRY-HTLLI--SNSS-VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-NHAAFVLQSGQVFTC 187 (488)
Q Consensus 113 i~~i~~G~~-h~~~l--~~g~-vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~-~~~~~lt~~G~vy~w 187 (488)
+..|..|.. |..+. .||+ +|+.+. .| ....+.+.....+++|..|. -+.++++.||+...-
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg------------~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANR--DG------------TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEET--TS------------EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcC--CC------------eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 567777654 66544 6675 888753 23 34567777777888999886 456888999986555
Q ss_pred eCCCCCcccCCCCCC-----ceeCCEEeccCCCCCeEEEEecCC---eeEEEEeCCcEEEEECCCCCccCCCCCCCCCCc
Q 011356 188 GDNSSFCCGHRDTNR-----PIFRPRLVEALKGVPCKQVTAGLN---FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP 259 (488)
Q Consensus 188 G~n~~gqlG~~~~~~-----~~~~p~~v~~~~~~~i~~V~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p 259 (488)
+....+++-.-+... .+............++..|.+... +.+.+.+.|++|.--.. +. .+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~-----------d~-~~ 162 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS-----------DP-KN 162 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT-----------TS-SC
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec-----------cc-cc
Confidence 544444444322211 011111111112345666654322 45566677888765211 00 11
Q ss_pred eeecCCCCCCCEEEEEeCC-CeEEEEEcCCcEEEecCCC
Q 011356 260 KSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYSFGSGS 297 (488)
Q Consensus 260 ~~i~~~~~~~~i~~i~~G~-~~~~~lt~~G~v~~wG~n~ 297 (488)
..+..+..|. -|=.+++.+|+-|.-+.+.
T Consensus 163 ---------~~~~~i~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 163 ---------LKVTTIKVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp ---------EEEEEEE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred ---------cceeeecccccccccccCcccceeeecccc
Confidence 1234444443 4667788888766555443
No 67
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=44.25 E-value=4.8e+02 Score=28.82 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=82.2
Q ss_pred CCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEe--CCCeEEEEeCCCcEEEEecCCCCC
Q 011356 277 GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGA 354 (488)
Q Consensus 277 G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gq 354 (488)
-...++++|++|-|-..-...+. +..+ .+.. +..+..+.. ..++.+++|++|++|.+-.+.--
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~------------~sai-kLKe-gD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP- 557 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDID------------LSTL-KYKA-GDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP- 557 (735)
T ss_pred CcceEEEEecCCEEEeccccccc------------hhcc-CcCC-CCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-
Confidence 45678889999877654332221 1111 1111 123333333 44457889999999999765431
Q ss_pred CCCCCCCCcccce--eecCCCCCcEEEEEeeCC--eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCC
Q 011356 355 LGHGDEIDKTLPE--PLSSLKSHLAVQVCARKR--KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAH 430 (488)
Q Consensus 355 lG~~~~~~~~~p~--~v~~~~~~~i~~v~~G~~--~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~ 430 (488)
.|. ....|. .+....+.+|+.+.+... +-+++|+.|...-.=-+++-....+. .. -..++ .+.
T Consensus 558 ~GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaG---Kg----vi~Lk--~~d 624 (735)
T TIGR01062 558 SAR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAG---KA----LINLP--ENA 624 (735)
T ss_pred cCc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCC---eE----EEEeC--CCC
Confidence 121 112222 232335667888777654 46788888866655433222111110 00 00011 111
Q ss_pred CEEE--EEecC-CeEEEEEcCCCEEEEeCCCCCCCCC
Q 011356 431 HVSQ--ISTGL-YHTVVVTDRGRLFGFGDNERAQLGH 464 (488)
Q Consensus 431 ~v~~--v~~G~-~ht~~l~~~G~v~~wG~n~~GqLG~ 464 (488)
.++. ...+. .+.++++++|++..+-.++--++|.
T Consensus 625 ~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 625 SVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred EEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 2222 12233 3577899999999888776555544
No 68
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=42.28 E-value=6.1e+02 Score=29.52 Aligned_cols=208 Identities=15% Similarity=0.095 Sum_probs=0.0
Q ss_pred CEEEEEeCCce-eEEEE--cCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEE-EecCCeeEEE-EeCCcEE
Q 011356 164 HVVQVSASENH-AAFVL--QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV-TAGLNFTGFL-TIRGHVH 238 (488)
Q Consensus 164 ~i~~i~~G~~~-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V-~~G~~h~~~l-t~~G~vy 238 (488)
.+.+++....| +++++ +||.|-.|-.-..---+..........| .+.++.+| .|++.+.+|+ ++||.|-
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~------~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP------EGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec------cCCceEEEEeccCCCeEEEEcCCCeEE
Q ss_pred EEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeE-----EEEEcCCcEEEecCCCCCccCCCCCCCCcCce
Q 011356 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYM-----LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 313 (488)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~-----~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~ 313 (488)
..+-+.+ ........-.+++.+.+...++++-+-..+. ++.|..+.+..|+....--+
T Consensus 1124 ~~~id~~-----~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~------------ 1186 (1431)
T KOG1240|consen 1124 VLRIDHY-----NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA------------ 1186 (1431)
T ss_pred EEEcccc-----ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH------------
Q ss_pred eeeecccCCeeEEEEEeCCCeEEEE--eCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCc--EEEEEeeCCeEEE
Q 011356 314 AIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHL--AVQVCARKRKTFV 389 (488)
Q Consensus 314 ~i~~~~~~~~~i~~i~~g~~h~~~l--t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~--i~~v~~G~~~t~~ 389 (488)
........-.-|++|+.......++ |..|.+-.|-.--.--.-.-......-++.+..-.-.+ -..|++|..
T Consensus 1187 w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~---- 1262 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS---- 1262 (1431)
T ss_pred HhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----
Q ss_pred EEcCCcEEEEE
Q 011356 390 LVDTGSVYGFG 400 (488)
Q Consensus 390 lt~~G~vy~wG 400 (488)
..++|-.|+
T Consensus 1263 --~~nevs~wn 1271 (1431)
T KOG1240|consen 1263 --SNNEVSTWN 1271 (1431)
T ss_pred --CCCceeeee
No 69
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=40.88 E-value=33 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=15.7
Q ss_pred CeEEEEeCCCcEEEEecCC
Q 011356 333 EHVVALDSSGYVYTWGKGY 351 (488)
Q Consensus 333 ~h~~~lt~~G~vy~wG~n~ 351 (488)
-+.++++.+|.+|..|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999743
No 70
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=39.40 E-value=6.4e+02 Score=28.88 Aligned_cols=129 Identities=6% Similarity=0.033 Sum_probs=68.0
Q ss_pred CEEEEEe--CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEec-c-CCCCCeEEEEecC-----CeeEEEEeC
Q 011356 164 HVVQVSA--SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE-A-LKGVPCKQVTAGL-----NFTGFLTIR 234 (488)
Q Consensus 164 ~i~~i~~--G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~-~-~~~~~i~~V~~G~-----~h~~~lt~~ 234 (488)
.+.++.. ...+.+++|+.|++|..=...--.......+.++. ..+. . +.+.+|+.+.+-. .+.+++|++
T Consensus 553 ~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~--nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~ 630 (957)
T PRK13979 553 FNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLD--EIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDS 630 (957)
T ss_pred ceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHH--HhhhccCCCCCeEEEEEEeccCCCCCEEEEEECC
Confidence 4444433 45667899999999987443322111111111111 1111 1 1356677766643 246888999
Q ss_pred CcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-----CeEEEEEcCCcEEEecCCCCCccC
Q 011356 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLG 302 (488)
Q Consensus 235 G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~v~~wG~n~~gqlG 302 (488)
|.+.-.=-..+-. ... -...-.+.+...++.+.... .+.+++|++|.+.-+-.+.-...|
T Consensus 631 G~VKrt~L~ef~~-------~r~-~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mG 695 (957)
T PRK13979 631 GGIKKTSLDKFVT-------NYT-KLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVD 695 (957)
T ss_pred CeEEEEehhhccc-------ccc-ceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 9887663322210 111 13333344445676665433 458999999988777665444443
No 71
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.99 E-value=4.2e+02 Score=26.68 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=38.7
Q ss_pred CCEEEEEeCCCeEEEEE--cCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEE--eCCCcE
Q 011356 269 GSVVQIAAGPSYMLAVT--GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYV 344 (488)
Q Consensus 269 ~~i~~i~~G~~~~~~lt--~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~l--t~~G~v 344 (488)
.+|..++-..+--++|. .+.++..|-.-+. ..+.+-..-.....-|.+-.+|.+..++. ++|++|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-----------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-----------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecchh-----------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 56777766654444443 4667888854221 11111111111222466666676655555 689999
Q ss_pred EEEecC
Q 011356 345 YTWGKG 350 (488)
Q Consensus 345 y~wG~n 350 (488)
|.|-.-
T Consensus 465 yIWhr~ 470 (519)
T KOG0293|consen 465 YIWHRI 470 (519)
T ss_pred EEEEcc
Confidence 999763
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=38.85 E-value=10 Score=37.82 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=38.1
Q ss_pred ccCChHHHHHHHhcCCCCcccccccccccccccCCC-CCCCccccChhHH
Q 011356 11 EELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH-GLYPQKFRSLVDL 59 (488)
Q Consensus 11 ~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~-~~~~~~~~~~~~~ 59 (488)
-.|||+++..+|. +|+.+.+-.=...|++|..++ |-..|....+.++
T Consensus 73 ~~LPpEl~lkvFS--~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~ 120 (483)
T KOG4341|consen 73 RSLPPELLLKVFS--MLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTF 120 (483)
T ss_pred ccCCHHHHHHHHH--HHhHHHHHHHHHHHHHhhhhhhccccceeeehhcc
Confidence 4799999999999 999998888889999999876 4455665555554
No 73
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=38.11 E-value=11 Score=36.26 Aligned_cols=41 Identities=32% Similarity=0.353 Sum_probs=33.5
Q ss_pred cccCC----hHHHHHHHhcCCCCcccccccccccccccCCC-CCCCcc
Q 011356 10 IEELP----SHLIFEILTSGRLSAVDLAHLELTSKTFGGSH-GLYPQK 52 (488)
Q Consensus 10 ~~~lp----~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~-~~~~~~ 52 (488)
+.-|| ++|.+.||. ||+++||.+-+++||-...+. +-..|+
T Consensus 75 i~~lP~~gl~hi~e~ils--yld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILS--YLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHH--hcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 46789 999999999 999999999999999655533 445565
No 74
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.07 E-value=6.6e+02 Score=28.69 Aligned_cols=237 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEeC------CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCC-CCCeEEEEecCCe--eEEEEeCCcE
Q 011356 167 QVSAS------ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK-GVPCKQVTAGLNF--TGFLTIRGHV 237 (488)
Q Consensus 167 ~i~~G------~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~-~~~i~~V~~G~~h--~~~lt~~G~v 237 (488)
.++.+ ...++++-+-.+|....... ..++.|.--..+. ...|.+|+....+ .++++.+|.|
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~----------a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRR----------AVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccc----------cCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Q ss_pred EEEECCCCCccCCCCCCCCCCceeecCCCCC---CCEEEEEeCCCeEEEEEcCCcEEEecCCC--CCccCCCCCCCCcCc
Q 011356 238 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV---GSVVQIAAGPSYMLAVTGNGVVYSFGSGS--NFCLGHGEQHDELQP 312 (488)
Q Consensus 238 y~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~---~~i~~i~~G~~~~~~lt~~G~v~~wG~n~--~gqlG~~~~~~~~~p 312 (488)
..| ++..........|......... ..........-+-++...+..+++--... ...+-.-.......+
T Consensus 451 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (928)
T PF04762_consen 451 SIY------EWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS 524 (928)
T ss_pred EEE------EecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc
Q ss_pred eeeeecccCCeeEEEEEeCCCe--EEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCC---eE
Q 011356 313 RAIQTFRRKGIHVVRVSAGDEH--VVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR---KT 387 (488)
Q Consensus 313 ~~i~~~~~~~~~i~~i~~g~~h--~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~---~t 387 (488)
..+.........+..++....- .++-+.+|++| ++......... ...+.+-..--+....+.. +.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~--------~~~~~~~~~~~--~~fp~~c~~~~~~~~~~~~~~~~~ 594 (928)
T PF04762_consen 525 ASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF--------QLSSDGELSQI--VKFPQPCPWMEVCQINGSEDKRVL 594 (928)
T ss_pred eeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE--------EeecCCCcccc--ccCCCCCcEEEEEEECCccceeEE
Q ss_pred EEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEE
Q 011356 388 FVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGF 454 (488)
Q Consensus 388 ~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~w 454 (488)
+.|+++|++|+ ..... ..+|.++...+.|-++.|.+-.+...
T Consensus 595 ~GLs~~~~Ly~----------------n~~~l---------a~~~tSF~v~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 595 FGLSSNGRLYA----------------NSRLL---------ASNCTSFAVTDSFLLFTTTQHTLKFV 636 (928)
T ss_pred EEECCCCEEEE----------------CCEEE---------ecCCceEEEEcCEEEEEecCceEEEE
No 75
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=37.40 E-value=3e+02 Score=24.57 Aligned_cols=97 Identities=9% Similarity=-0.029 Sum_probs=45.5
Q ss_pred eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCC-eeEEEEe-CCcEEEEECCCCCccCCC
Q 011356 174 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTI-RGHVHTCGSNTHGQLGHG 251 (488)
Q Consensus 174 ~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~-h~~~lt~-~G~vy~wG~n~~gqlG~~ 251 (488)
..++...+|.++.|-..... ....+.. ....|..+..-.. ..++... +|.|+.|-......
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 127 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGE------------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC---- 127 (289)
T ss_pred EEEEEcCCCeEEEEEcCccc------------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE----
Confidence 45555668999998654410 1111111 1123455544332 3333343 78888885431111
Q ss_pred CCCCCCCceeecCCCCCCCEEEEEeCC-CeEEEEEc-CCcEEEecCC
Q 011356 252 DTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTG-NGVVYSFGSG 296 (488)
Q Consensus 252 ~~~~~~~p~~i~~~~~~~~i~~i~~G~-~~~~~lt~-~G~v~~wG~n 296 (488)
...+.. ....|..+.... ...++... +|.|+.|-..
T Consensus 128 -------~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 128 -------LTTLRG--HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred -------EEEecc--CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 111111 113455555544 23333333 8888888543
No 76
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=37.09 E-value=10 Score=35.31 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=27.9
Q ss_pred ccccccCChHHHHHHHhcCCCCcccccccccccccccC
Q 011356 7 LFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGG 44 (488)
Q Consensus 7 ~~~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~ 44 (488)
.+.+.|||.++++.||-- +=|-.||.+|.++--..+.
T Consensus 199 ~ltl~dLP~e~vl~Il~r-lsDh~dL~s~aqa~etl~~ 235 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLR-LSDHRDLESLAQAWETLAK 235 (332)
T ss_pred CCCcccchHHHHHHHHHH-ccCcchHHHHHHhhHHHHH
Confidence 567799999999999992 4567889888765544443
No 77
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=36.22 E-value=1.7e+02 Score=28.32 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=13.7
Q ss_pred ceeEeeeCCcEEEEeCCC
Q 011356 121 YHTLLISNSSVFSCGSSL 138 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (488)
.|++++.+++||++|-..
T Consensus 116 ~~~~~~~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNR 133 (323)
T ss_pred CceEEEECCEEEEEeCcC
Confidence 455666889999999754
No 78
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=35.94 E-value=20 Score=28.00 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.5
Q ss_pred cccCChHHHHHHHhcCCCCccccccc
Q 011356 10 IEELPSHLIFEILTSGRLSAVDLAHL 35 (488)
Q Consensus 10 ~~~lp~~i~~~~l~~~~l~~~d~~~L 35 (488)
...||.||-..||. +|+-.||..|
T Consensus 72 w~~LP~EIk~~Il~--~L~~~dL~~l 95 (97)
T PF09372_consen 72 WNILPIEIKYKILE--YLSNKDLKKL 95 (97)
T ss_pred hhhCCHHHHHHHHH--cCCHHHHHHH
Confidence 46799999999999 9999999765
No 79
>PRK05560 DNA gyrase subunit A; Validated
Probab=35.93 E-value=6.7e+02 Score=28.11 Aligned_cols=261 Identities=13% Similarity=0.091 Sum_probs=124.4
Q ss_pred CceeEEEEcCCcEEEEeCCCCCc-ccCCCCCCceeCCEEeccCCCCCeEEE--EecCCeeEEEEeCCcEEEEECCCCCcc
Q 011356 172 ENHAAFVLQSGQVFTCGDNSSFC-CGHRDTNRPIFRPRLVEALKGVPCKQV--TAGLNFTGFLTIRGHVHTCGSNTHGQL 248 (488)
Q Consensus 172 ~~~~~~lt~~G~vy~wG~n~~gq-lG~~~~~~~~~~p~~v~~~~~~~i~~V--~~G~~h~~~lt~~G~vy~wG~n~~gql 248 (488)
..-.++|+++|.+-..-...+-. -..+ . -...+..-++..+..+ +....+.+++|+.|++|..-... +
T Consensus 498 E~v~vllS~~GyIKri~~~~~~~~~~~~-~-----g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~---i 568 (805)
T PRK05560 498 EDVVVTLTHGGYIKRTPLDEYRAQRRGG-K-----GVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYE---I 568 (805)
T ss_pred CCEEEEEeCCCEEEEcchhhhhhhcccC-C-----CccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhh---C
Confidence 45567888999877653332210 0000 0 0000000112233333 44556678889999999985442 2
Q ss_pred CCCCCCCCCCce--eecCCCCCCCEEEEEeCC-----CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccC
Q 011356 249 GHGDTLDRPTPK--SIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (488)
Q Consensus 249 G~~~~~~~~~p~--~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~ 321 (488)
-.......-.|. .+. +...++|+.+.+-. ...+++|++|.+.-.-...+-.... .......+. .
T Consensus 569 P~~~~~~~G~~i~~ll~-L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r-------~G~~~ikLk-e 639 (805)
T PRK05560 569 PEASRTARGRPIVNLLP-LEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRS-------NGIIAINLD-E 639 (805)
T ss_pred cCCCcCCCCeEHHHhcC-CCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhccc-------CCceeeccC-C
Confidence 111111111111 122 33346788877754 3578899999776553332211000 011111122 1
Q ss_pred CeeEEEEEe--CCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecC-CCCCcEEEEEeeC---CeEEEEEcCCc
Q 011356 322 GIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS-LKSHLAVQVCARK---RKTFVLVDTGS 395 (488)
Q Consensus 322 ~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~v~~G~---~~t~~lt~~G~ 395 (488)
+..++.+.. ...+.+++|+.|++|.+-...--..|.... +..+.. -.+.+|+.+..-. .+.+++|++|.
T Consensus 640 ~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~ 714 (805)
T PRK05560 640 GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREGDEVVSMDVVREDSQEILTVTENGY 714 (805)
T ss_pred CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCe
Confidence 223444333 334678899999999986544322222111 111112 2345676665543 25677888886
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceecceEcCccC--CCCEEEE--EecCCeEEEEEcCCCEEEEeCCCCCCCC
Q 011356 396 VYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR--AHHVSQI--STGLYHTVVVTDRGRLFGFGDNERAQLG 463 (488)
Q Consensus 396 vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~--~~~v~~v--~~G~~ht~~l~~~G~v~~wG~n~~GqLG 463 (488)
+--.=.+++-.-..+. .....-.+. +..++.+ ..+....++++++|++.-+-.++--..|
T Consensus 715 iKr~~l~e~~~~~R~~--------kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~~g 778 (805)
T PRK05560 715 GKRTPVSEYRLQGRGG--------KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISITG 778 (805)
T ss_pred EEEEEHHHhhccCCCC--------CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCccc
Confidence 6654322221111100 011111111 1233332 2345568889999998887666544333
No 80
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.82 E-value=3.6e+02 Score=25.01 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=25.7
Q ss_pred eeeEeeCCCCC--CEEEEEeCCceeEEEEcCCcEEEEe
Q 011356 153 SFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCG 188 (488)
Q Consensus 153 ~p~~~~~~~~~--~i~~i~~G~~~~~~lt~~G~vy~wG 188 (488)
.+.|+++.... .|.+|-......++=+.||++-.+-
T Consensus 134 s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred CCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence 46677765433 6888888888888888888876653
No 81
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=34.83 E-value=95 Score=17.98 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCcEEE
Q 011356 269 GSVVQIAAGPSYMLAVTGNGVVYS 292 (488)
Q Consensus 269 ~~i~~i~~G~~~~~~lt~~G~v~~ 292 (488)
+.|..|++|.....+.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 579999999999999998885543
No 82
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=34.77 E-value=91 Score=30.17 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=39.0
Q ss_pred EEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCe--eEEEEeCCcEEEEE
Q 011356 176 AFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF--TGFLTIRGHVHTCG 241 (488)
Q Consensus 176 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h--~~~lt~~G~vy~wG 241 (488)
++..+.|+||.|-.... .+...++......+..|+|.+....- .+++.++|.||-|-
T Consensus 323 a~gnq~g~v~vwdL~~~---------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN---------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCCC---------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 34457899999964331 23356667777777788888766544 45568899999984
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=32.27 E-value=4.3e+02 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=23.5
Q ss_pred CceeecCCCCCCCEE-EEEeCCCeEEEE-EcCCcEEEecCC
Q 011356 258 TPKSIAPLEEVGSVV-QIAAGPSYMLAV-TGNGVVYSFGSG 296 (488)
Q Consensus 258 ~p~~i~~~~~~~~i~-~i~~G~~~~~~l-t~~G~v~~wG~n 296 (488)
.|..+..-+. .|+ -+-|-.+++++- ++++.|-.|-..
T Consensus 135 pp~E~~ghtg--~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 135 PPKEISGHTG--GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CchhhcCCCC--cceeEEEeccCceEEeeccCCceEEEEec
Confidence 4555554443 343 356777777766 788999999653
No 84
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.63 E-value=2.9e+02 Score=27.81 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=15.8
Q ss_pred eEEEEecCCeeEEE--EeCCcEEEEEC
Q 011356 218 CKQVTAGLNFTGFL--TIRGHVHTCGS 242 (488)
Q Consensus 218 i~~V~~G~~h~~~l--t~~G~vy~wG~ 242 (488)
|..--.|.+..++. ++|++||.|-.
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEc
Confidence 34444455545555 58999999943
No 85
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=30.31 E-value=50 Score=21.74 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=13.6
Q ss_pred ceeEeeeCCcEEEEeCC
Q 011356 121 YHTLLISNSSVFSCGSS 137 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (488)
.|++++.++++|+||--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 46666699999999965
No 86
>PHA02790 Kelch-like protein; Provisional
Probab=30.04 E-value=3.6e+02 Score=27.96 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=11.5
Q ss_pred eeEeeeCCcEEEEeCC
Q 011356 122 HTLLISNSSVFSCGSS 137 (488)
Q Consensus 122 h~~~l~~g~vy~wG~n 137 (488)
|+++.-+|+||+.|-.
T Consensus 312 ~~~v~~~~~iYviGG~ 327 (480)
T PHA02790 312 ASGVPANNKLYVVGGL 327 (480)
T ss_pred ceEEEECCEEEEECCc
Confidence 3333478999999964
No 87
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.17 E-value=5.3e+02 Score=24.85 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=12.5
Q ss_pred CeeEEEEeCCcEEEEECCC
Q 011356 226 NFTGFLTIRGHVHTCGSNT 244 (488)
Q Consensus 226 ~h~~~lt~~G~vy~wG~n~ 244 (488)
.|++++ -+++||++|...
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 455544 478999998753
No 88
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=28.84 E-value=1.5e+02 Score=28.80 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=37.0
Q ss_pred EEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCe--EEEEEcCCCEEEEeC
Q 011356 389 VLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYH--TVVVTDRGRLFGFGD 456 (488)
Q Consensus 389 ~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~h--t~~l~~~G~v~~wG~ 456 (488)
+..+.|+||+|--.. .+....++.........|.+.+....- .+++.+||.||.|-+
T Consensus 324 ~gnq~g~v~vwdL~~-----------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDN-----------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCC-----------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 345679999998321 122234555555556678887776544 445678999999954
No 89
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=28.41 E-value=5.6e+02 Score=24.88 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred CcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCC-cEEEecCCCCCccCCCCCCCCcCce
Q 011356 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNG-VVYSFGSGSNFCLGHGEQHDELQPR 313 (488)
Q Consensus 235 G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G-~v~~wG~n~~gqlG~~~~~~~~~p~ 313 (488)
++|..| +...-..+..+.-..+|+.|..-.+|.+++.++- .||.+..|-
T Consensus 75 NkviIW--------------DD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~---------------- 124 (346)
T KOG2111|consen 75 NKVIIW--------------DDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNP---------------- 124 (346)
T ss_pred ceEEEE--------------ecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCCh----------------
Q ss_pred eeeecccCCeeEEEEEeCCCeEEEE--eCCCcEEEEecCCCCCCCCCCCCCccc--ceeecCCCCCcEEEEEeeCCeEEE
Q 011356 314 AIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYVYTWGKGYCGALGHGDEIDKTL--PEPLSSLKSHLAVQVCARKRKTFV 389 (488)
Q Consensus 314 ~i~~~~~~~~~i~~i~~g~~h~~~l--t~~G~vy~wG~n~~gqlG~~~~~~~~~--p~~v~~~~~~~i~~v~~G~~~t~~ 389 (488)
....+.+...-..-.+++ +.+-.+.++=-...||+-.-+-..... |..|+.-+. +-.+++
T Consensus 125 -------k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s---------~Iacv~ 188 (346)
T KOG2111|consen 125 -------KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS---------DIACVA 188 (346)
T ss_pred -------hheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC---------ceeEEE
Q ss_pred EEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeE--------------EEEEcCCCEEEEe
Q 011356 390 LVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHT--------------VVVTDRGRLFGFG 455 (488)
Q Consensus 390 lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht--------------~~l~~~G~v~~wG 455 (488)
|+.+|.+.+.+ +.+-.--+....-.+..+..+--|..|+ ++..+.|+|..|+
T Consensus 189 Ln~~Gt~vATa--------------StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 189 LNLQGTLVATA--------------STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EcCCccEEEEe--------------ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
No 90
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=27.86 E-value=4.4e+02 Score=23.47 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=50.4
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC--CeeEEEEeCCcEEE
Q 011356 164 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHT 239 (488)
Q Consensus 164 ~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~--~h~~~lt~~G~vy~ 239 (488)
+|..++... ...++-..+|.++.|-..... ....... ....+..+..-. .+.++...+|.|+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE------------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC------------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 455554433 344444558999998654311 0011111 111233333322 34455566899998
Q ss_pred EECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC-eEEEEEc-CCcEEEecCC
Q 011356 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS-YMLAVTG-NGVVYSFGSG 296 (488)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~-~~~~lt~-~G~v~~wG~n 296 (488)
|-.... .....+... ...|..+..... ..++... +|.|+.|-..
T Consensus 78 ~~~~~~-----------~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 78 WDLETG-----------ECVRTLTGH--TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEcCcc-----------cceEEEecc--CCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 854321 111122211 134666655443 3444444 7888888654
No 91
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.64 E-value=1.2e+02 Score=22.82 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=27.9
Q ss_pred eeCCEEeccCCCCCeEEEEec-CCeeEEEEeCCcEEEEECCCCCcc
Q 011356 204 IFRPRLVEALKGVPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQL 248 (488)
Q Consensus 204 ~~~p~~v~~~~~~~i~~V~~G-~~h~~~lt~~G~vy~wG~n~~gql 248 (488)
...|-.+..-. .=..|+|. ....++|++||.+|.-+--+.|.+
T Consensus 6 ~t~Pa~i~~~~--tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 6 VTHPASINLGQ--TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp EE--SEEETT---SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred Ecccccccccc--cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 34455554322 23789999 888999999999999887556653
No 92
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=27.61 E-value=2.5e+02 Score=28.01 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=42.0
Q ss_pred eEEEecCce---eEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEe
Q 011356 114 MQITTGRYH---TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (488)
Q Consensus 114 ~~i~~G~~h---~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG 188 (488)
+.+.+|..+ .+++ .+|++..|-.+ ..+.++. ....+.+|..=....+|++..|+||.+.
T Consensus 163 ~~~~~~~~~~~~vl~i~~~g~l~~w~~~---------------~Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 163 VKVKEGDNHRDGVLGIGRDGKINYWDGN---------------VLKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEeecCCCcceEEEEEeecCcEeeecCC---------------eeeEccC-CCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 345666664 4455 88999888632 3344442 3447899999888999999999999986
No 93
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=27.16 E-value=63 Score=21.06 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=12.0
Q ss_pred CCeEEEEEcCCcEEEEE
Q 011356 384 KRKTFVLVDTGSVYGFG 400 (488)
Q Consensus 384 ~~~t~~lt~~G~vy~wG 400 (488)
..|+++...+++||.+|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 46888888889999999
No 94
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=26.55 E-value=3.3e+02 Score=27.18 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=41.7
Q ss_pred EEEEEeCCCe---EEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEE
Q 011356 325 VVRVSAGDEH---VVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFG 400 (488)
Q Consensus 325 i~~i~~g~~h---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG 400 (488)
+..+.++.++ .+++-.+|++..|..+ ..+.++ .....+.+|.--....+|++..|+||++.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 4456777775 5667788999888632 233333 24456777777777888887778888776
No 95
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=26.55 E-value=3.5e+02 Score=21.88 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=40.3
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEE
Q 011356 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (488)
Q Consensus 271 i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~w 347 (488)
.+++.|-..+.+.+..+|.|-.-+... +...-..+...... .|.=-++-...-+++++.|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~----------~~~s~~~i~~~~~g--~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN----------SPYSVFEIHSVGFG--VVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT----------STTGEEEEEEEETT--EEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC----------cceeEEEEEeccce--EEEEEEecceEEEEECCCCeEccc
Confidence 567888888899999999998876431 11222222222211 222223344667899999999984
No 96
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=26.35 E-value=1.1e+02 Score=22.88 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=25.0
Q ss_pred CCEEEEEeC-CceeEEEEcCCcEEEEeCCCCCcc
Q 011356 163 AHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCC 195 (488)
Q Consensus 163 ~~i~~i~~G-~~~~~~lt~~G~vy~wG~n~~gql 195 (488)
..=..|+|. ....++|+.||.+|.-+--..|.+
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 356789999 899999999999999886555544
No 97
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=25.70 E-value=7.1e+02 Score=25.19 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=37.6
Q ss_pred CCceEEEecCc-eeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCC--CCCCEEEEEeCCceeEEEEcCCcEEE
Q 011356 111 AGNMQITTGRY-HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFT 186 (488)
Q Consensus 111 ~~i~~i~~G~~-h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~--~~~~i~~i~~G~~~~~~lt~~G~vy~ 186 (488)
.+|+.+.--.. +.+++ +||.++.+- -.|.. . ...+..+... ...++-.+..+..-.++||.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-~------fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-Q------FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-e------echhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 34555554444 44455 899888763 33332 0 0011111110 11234445667677899999999998
Q ss_pred EeC
Q 011356 187 CGD 189 (488)
Q Consensus 187 wG~ 189 (488)
-=.
T Consensus 152 v~n 154 (410)
T PF04841_consen 152 VNN 154 (410)
T ss_pred EeC
Confidence 833
No 98
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=25.54 E-value=5.5e+02 Score=23.90 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred ceeEeeeCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEE---------------------
Q 011356 121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVL--------------------- 179 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt--------------------- 179 (488)
.|+.++.+++|..+-....|.-.+.-... ...........++.| ..|+...+
T Consensus 1 mh~~~~~~~~v~~~d~t~~g~s~~~~~~~------~c~~~~~~~~~~~d~-~a~s~~yD~~tn~~rpl~v~td~FCSgg~ 73 (243)
T PF07250_consen 1 MHMALLHNNKVIMFDRTNFGPSNISLPDG------RCRDNPEDNALKFDG-PAHSVEYDPNTNTFRPLTVQTDTFCSGGA 73 (243)
T ss_pred CeEeEccCCEEEEEeCCCcccccccCCCC------ccccCccccccccCc-eEEEEEEecCCCcEEeccCCCCCcccCcC
Q ss_pred --cCCcEEEEeCCCCCcccCCCCCCceeCCEE---eccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCC-
Q 011356 180 --QSGQVFTCGDNSSFCCGHRDTNRPIFRPRL---VEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDT- 253 (488)
Q Consensus 180 --~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~---v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~- 253 (488)
.||++...|-+.. +........|.. -.......=....--|+-++.+..||+|++.|-...--.-.-..
T Consensus 74 ~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 74 FLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCc
Q ss_pred CCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCC
Q 011356 254 LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (488)
Q Consensus 254 ~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~ 297 (488)
.....+..+..+..... ......+=.+.|.-+|+||.++.+.
T Consensus 149 ~~~~~~~~~~~l~~~~~--~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSD--TLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cCCCCceeeecchhhhc--cCccccCceEEEcCCCCEEEEEcCC
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=25.40 E-value=3e+02 Score=25.16 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=16.4
Q ss_pred cCCeEEEEEcCCCEEEEeCCCC
Q 011356 438 GLYHTVVVTDRGRLFGFGDNER 459 (488)
Q Consensus 438 G~~ht~~l~~~G~v~~wG~n~~ 459 (488)
|.-.+.+-..+|++.+.|.|++
T Consensus 90 gsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred ccEEEEEecCccCeEEecCCCc
Confidence 4455667778888888888875
No 100
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=24.64 E-value=1.9e+02 Score=28.47 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=35.5
Q ss_pred eCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEE---EEEeCCCeEEEEeCCCcEEEEec
Q 011356 276 AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVV---RVSAGDEHVVALDSSGYVYTWGK 349 (488)
Q Consensus 276 ~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~---~i~~g~~h~~~lt~~G~vy~wG~ 349 (488)
.|..-...+..||.+........|+.- .+.. +.|...+..+. .......+.++++-+|+||..-.
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-------~~~t--~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEA-------QKST--KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEE-------EEEE--EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEe-------Eeec--cccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 344445577778877777665555431 1111 12222221221 12345678889999999998654
No 101
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=24.26 E-value=7.1e+02 Score=24.69 Aligned_cols=74 Identities=8% Similarity=0.069 Sum_probs=43.2
Q ss_pred ceEEEecCceeEee-eCC-cEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCc-e--------eEEEEcC
Q 011356 113 NMQITTGRYHTLLI-SNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-H--------AAFVLQS 181 (488)
Q Consensus 113 i~~i~~G~~h~~~l-~~g-~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~-~--------~~~lt~~ 181 (488)
+-.|..|...-.++ .|| .+|+.-. -+-++-.|...+ ..+.+.......+.+|..+.. + .++|+.|
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva~~-~~~R~~~G~~~d---~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d 115 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHAST-VYSRIARGKRTD---YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD 115 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEEec-cccccccCCCCC---EEEEEECccCcEEeEEccCCCchhhccCccceEEECCC
Confidence 34677776444457 554 5666543 233334444444 334455555556777776655 4 8899999
Q ss_pred Cc-EEEEeCC
Q 011356 182 GQ-VFTCGDN 190 (488)
Q Consensus 182 G~-vy~wG~n 190 (488)
|+ +|..-.+
T Consensus 116 gk~l~V~n~~ 125 (352)
T TIGR02658 116 NKTLLFYQFS 125 (352)
T ss_pred CCEEEEecCC
Confidence 97 7776544
No 102
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=23.70 E-value=1.5e+02 Score=16.94 Aligned_cols=17 Identities=47% Similarity=0.726 Sum_probs=12.6
Q ss_pred eEEEEeCCCcEEEEecC
Q 011356 334 HVVALDSSGYVYTWGKG 350 (488)
Q Consensus 334 h~~~lt~~G~vy~wG~n 350 (488)
|.++++.+|+||..-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56778888888886543
No 103
>PF13964 Kelch_6: Kelch motif
Probab=21.76 E-value=81 Score=20.70 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=14.2
Q ss_pred ceeEeeeCCcEEEEeCCCC
Q 011356 121 YHTLLISNSSVFSCGSSLC 139 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~~ 139 (488)
.|+++.-+++||++|-...
T Consensus 4 ~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred cCEEEEECCEEEEECCCCC
Confidence 4556558899999996654
No 104
>PF13854 Kelch_5: Kelch motif
Probab=21.42 E-value=96 Score=19.65 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=14.0
Q ss_pred ceeEeeeCCcEEEEeCCC
Q 011356 121 YHTLLISNSSVFSCGSSL 138 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (488)
.|++++.++++|.+|-..
T Consensus 7 ~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred ceEEEEECCEEEEEcCcc
Confidence 566777779999999654
No 105
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=20.39 E-value=4.9e+02 Score=21.37 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=36.0
Q ss_pred CEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEE
Q 011356 270 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (488)
Q Consensus 270 ~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~ 346 (488)
+.+++.|-..+.+.+..+|.|-..-. ..+...-.++...... .|.=-.+-...-+++++.|+||+
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~----------~~~~~~ile~~s~~~g--~V~ik~~~s~~YLCmn~~G~ly~ 67 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRD----------ESSSFTILEIIAVAVG--VVAIKGVASCRYLCMNKCGKLYG 67 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccC----------CCCcceEEEEEeccCC--EEEEEEcccceEEEECCCCCEEE
Confidence 56777777656677778888764321 1111222222222211 22222334566788999999998
Done!