BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011357
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/466 (47%), Positives = 296/466 (63%), Gaps = 27/466 (5%)
Query: 22 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCRE 81
V A+SG+GQQHGS+YWK G+ L+SL P L QL D FS + PVWMDSSTTAQCR+
Sbjct: 91 VLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQ 150
Query: 82 IEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAY 141
+E AVGGA LS LTGSR YERFTG QI K++Q P Y TERIS+VSSF ASL +G+Y
Sbjct: 151 LEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSY 210
Query: 142 ACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHF 201
+ ID +D +GMNL+ I+ +VWS+ L A AP LEEKL P+ +V G I+ Y+V+R+ F
Sbjct: 211 SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGF 270
Query: 202 NKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDT 261
C VV ++GDNP SLAG+ L GD+A+SLGTSDT+F +P P LEGH+F NPVD+
Sbjct: 271 PPGCKVVAFTGDNPASLAGMRLE-EGDIAVSLGTSDTLFLWLQEPMPALEGHIFCNPVDS 329
Query: 262 KGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLP 321
+ YM +L +KN SL RE +RN +SW F+K LQ T NGG +GFY+ EI P +
Sbjct: 330 QHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEI- 388
Query: 322 VGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPR-R 380
+G HR+ EN +V F EVRAL+EGQF++ R HAE G + +
Sbjct: 389 IGRHRFNTENH-----------KVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRVMSKTK 437
Query: 381 IIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNM 440
I+ATGGAS N+ IL LA ++ +Y + +SA +G+A RA HG G+ VP S
Sbjct: 438 ILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGL---AGGTDVPFS-- 492
Query: 441 YKDKLEKTSLSCKLAVT--AGDQQLVSKYAVMMKKRLEIENRLVEK 484
++ K + + +LA T G Q+ Y ++ + ++E R++ +
Sbjct: 493 ---EVVKLAPNPRLAATPSPGASQV---YEALLPQYAKLEQRILSQ 532
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/466 (46%), Positives = 290/466 (62%), Gaps = 27/466 (5%)
Query: 22 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCRE 81
V A+SG+GQQHGS+YWK G+ L+SL P L QL D FS + PVW DSSTTAQCR+
Sbjct: 91 VLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWXDSSTTAQCRQ 150
Query: 82 IEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAY 141
+E AVGGA LS LTGSR YERFTG QI K++Q P Y TERIS+VSSF ASL +G+Y
Sbjct: 151 LEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSY 210
Query: 142 ACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHF 201
+ ID +D +G NL+ I+ +VWS+ L A AP LEEKL P+ +V G I+ Y+V+R+ F
Sbjct: 211 SPIDYSDGSGXNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGF 270
Query: 202 NKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDT 261
C VV ++GDNP SLAG L GD+A+SLGTSDT+F +P P LEGH+F NPVD+
Sbjct: 271 PPGCKVVAFTGDNPASLAGXRLE-EGDIAVSLGTSDTLFLWLQEPXPALEGHIFCNPVDS 329
Query: 262 KGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLP 321
+ Y +L +KN SL RE +RN +SW F+K LQ T NGG +GFY+ EI P +
Sbjct: 330 QHYXALLCFKNGSLXREKIRNESVSRSWSDFSKALQSTEXGNGGNLGFYFDVXEITPEI- 388
Query: 322 VGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPR-R 380
+G HR+ EN +V F EVRAL+EGQF + R HAE G + +
Sbjct: 389 IGRHRFNTENH-----------KVAAFPGDVEVRALIEGQFXAKRIHAEGLGYRVXSKTK 437
Query: 381 IIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNM 440
I+ATGGAS N+ IL LA ++ +Y + +SA +G+A RA HG G+ VP S +
Sbjct: 438 ILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGL---AGGTDVPFSEV 494
Query: 441 YKDKLEKTSLSCKLAVT--AGDQQLVSKYAVMMKKRLEIENRLVEK 484
K + + +LA T G Q+ Y ++ + ++E R++ +
Sbjct: 495 V-----KLAPNPRLAATPSPGASQV---YEALLPQYAKLEQRILSQ 532
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 164/445 (36%), Gaps = 82/445 (18%)
Query: 22 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCRE 81
V+A++ GQQHG V ++D G+ +++ +W D+S+ Q
Sbjct: 65 VSALAVGGQQHGXV------------------ILDNQGNVI--RDAXLWNDTSSAPQAAA 104
Query: 82 IEKAVG---------------GALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERI 126
+ + +G G K GS +T ++ + + +P I
Sbjct: 105 LIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKIAAI 164
Query: 127 SVVSSFMASLLIGAYACI-------------DETDAAGMNLMDIRQRVWSKIVLEATAPS 173
+ ++ S I Y + D +DA+G D + + ++ A
Sbjct: 165 CLPHDWL-SWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLI---AXV 220
Query: 174 LEEKLG-KLAPAHAVAGCI---------APYFVERFHFNKN----CLVVQWSGDNPNSLA 219
LE G K A +HA A + AP + KN CL+ GDN +
Sbjct: 221 LEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNAXASL 280
Query: 220 GLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTRED 279
GL + GD++ISLGTS I+++P L G V T Y+ + N S +
Sbjct: 281 GLGXAV-GDVSISLGTSGVAAAISENPTYDLTGAVSGFADCTGHYLPLACTINGSRILDA 339
Query: 280 VRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDG 339
R ++ P NG + Y+ + E P P F G TL
Sbjct: 340 GRAALGVDYDELAKLAFASKPGANGITLVPYF-DGERTPNRP-----NATATFSGXTLAN 393
Query: 340 VNEVEVKEFDPPSEVRALVEGQFLSMRGHAERF-GLPSPPRRIIATGGASANQTILSCLA 398
+ RA VEG S R E L + RI+ GG + ++ I +
Sbjct: 394 TTRENL--------ARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAP 445
Query: 399 SIYGCDIYTVQRPDSASLGAALRAA 423
SI G D+ + ++GAA +AA
Sbjct: 446 SILGXDVTRPATDEYVAIGAARQAA 470
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 137/361 (37%), Gaps = 21/361 (5%)
Query: 66 ESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER 125
S W D+ + ++ K G A ++ + TG + ++ L + V+ ++
Sbjct: 95 NSITWADNCAKSIVQD-AKNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFSQAQK 153
Query: 126 ISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLAPAH 185
+ ++ L G D T AAG +++++ W + +L+ +E+L K+A
Sbjct: 154 WIGIKEYIIFRLTGKLVT-DTTXAAGTGILNLKTLTWDQELLDILKIK-KEQLPKIAQPT 211
Query: 186 AVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDD 245
V I +V++ + + ++ + D S G+ S A+++GTS + I D
Sbjct: 212 KVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQ 271
Query: 246 PEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNR---CAEKSWDVFNKYLQQTPPL 302
P+ F P D Y++ N + R E D + + QT P
Sbjct: 272 PKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLD--VAQTAPA 329
Query: 303 NGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQF 362
+ F LP L G I + + G+ K P RA++EG
Sbjct: 330 GSRNLIF-------LPYLG-GERAPIWDANARGSFVGLTRXHQK----PEXARAVIEGII 377
Query: 363 LSMRGHAERF-GLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALR 421
++ A P I ATGG + + A+I+ I T + S +L A
Sbjct: 378 FNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTXKEQQSGTLAAXFL 437
Query: 422 A 422
A
Sbjct: 438 A 438
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 37/308 (12%)
Query: 69 VWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISV 128
+W D +C +E V + +TG+ FT P++ + + +P ++ +++ +
Sbjct: 95 LWNDGRCAQECTLLEARVP---QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLL 151
Query: 129 VSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLAPAHAVA 188
++ + G +A D +DAAG +D+ +R WS ++L+A S +++ L +
Sbjct: 152 PKDYLRLRMTGEFAS-DMSDAAGTMWLDVAKRDWSDVMLQACDLS-RDQMPALYEGSEIT 209
Query: 189 GCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDD--P 246
G + P + + VV GDN G+ + + +SLGTS F +++
Sbjct: 210 GALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLS 268
Query: 247 EPRLEGHVFPNPVDTKGYMIMLVYKNAS-----------------LTREDVRNRCAEKSW 289
+P H F + + + +++ ++ AS + + AE W
Sbjct: 269 KPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVW 328
Query: 290 DVFNKYL--QQTPPLNGGKMGFYY---KEHEILPPLPVGFHRYILENFEGETLDGVNEVE 344
F YL ++TP N G ++ +H P R +LE DG++ V
Sbjct: 329 --FLPYLSGERTPHNNPQAKGVFFGLTHQHG-----PNELARAVLEGVGYALADGMDVVH 381
Query: 345 VKEFDPPS 352
P S
Sbjct: 382 ACGIKPQS 389
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 426 YLCSKKGSFVPISNMYKDKLEKTSLSC-KLAVTAGDQQLVSKYAV 469
YL SK+ FVP ++YKD L L C V G + L S+ +
Sbjct: 122 YLRSKRNEFVPYKDLYKDFLTLEHLICYSFQVAKGMEFLASRKXI 166
>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
Plp And Inhibitor Avg
Length = 428
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPD 412
E R + RG RF P R ++A G AN+TI+ CLA D + V P
Sbjct: 87 EFRKAIAKFMEKTRGGRVRF---DPERVVMAGGATGANETIIFCLAD--PGDAFLVPSPY 141
Query: 413 SASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLA 455
+ LR G +PI + + TS + K A
Sbjct: 142 YPAFNRDLRWRTGV------QLIPIHCESSNNFKITSKAVKEA 178
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 67 SPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERI 126
S +W D + A+ E+E A+ ALE R + T +IR Q +P D+ E++
Sbjct: 11 SKIWADENKYAKMLEVELAILEALE------DRMVPKGTAAEIRARAQIRPERVDEIEKV 64
Query: 127 S 127
+
Sbjct: 65 T 65
>pdb|1HXM|A Chain A, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|C Chain C, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|E Chain E, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|G Chain G, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 229
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 283 RCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNE 342
RC+ K + N Y+ G M F Y+E +I P GF +NF+G+ +D
Sbjct: 22 RCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGP---GFK----DNFQGD-IDIAKN 73
Query: 343 VEVKEFDPPSE 353
+ V + PSE
Sbjct: 74 LAVLKILAPSE 84
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 19/77 (24%)
Query: 329 LENFEG-ETLDGVNEVEVKE-FDPPSEVRALVEGQFLSMRGHA----------------- 369
LE F G +L+ N V V+E DP S V+ +E + + + +
Sbjct: 121 LEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIEHCISSN 180
Query: 370 ERFGLPSPPRRIIATGG 386
E F LP PPRR++ GG
Sbjct: 181 EAFYLPEPPRRVLTVGG 197
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 329 LENFEG-ETLDGVNEVEVKE-FDPPSEVRALVEGQFLSMRGHA----------------- 369
LE F G +L+ N V V+E DP S V+ +E + + + +
Sbjct: 119 LEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIEHCISSN 178
Query: 370 ERFGLPSPPRRIIATGGA 387
E F LP PPRR++ GG
Sbjct: 179 EAFYLPEPPRRVLTVGGG 196
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 329 LENFEG-ETLDGVNEVEVKE-FDPPSEVRALVEGQFLSMRGHA----------------- 369
LE F G +L+ N V V+E DP S V+ +E + + + +
Sbjct: 120 LEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIEHCISSN 179
Query: 370 ERFGLPSPPRRIIATGGA 387
E F LP PPRR++ GG
Sbjct: 180 EAFYLPEPPRRVLTVGGG 197
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 329 LENFEG-ETLDGVNEVEVKE-FDPPSEVRALVEGQFLSMRGHA----------------- 369
LE F G +L+ N V V+E DP S V+ +E + + + +
Sbjct: 120 LEFFLGWGSLESKNVVNVRESADPASAVKERLETENILLASGSWPHMPNIPGIEHCISSN 179
Query: 370 ERFGLPSPPRRIIATGGA 387
E F LP PPRR++ GG
Sbjct: 180 EAFYLPEPPRRVLTVGGG 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,464,127
Number of Sequences: 62578
Number of extensions: 608184
Number of successful extensions: 1357
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 14
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)