Query 011357
Match_columns 488
No_of_seqs 226 out of 1381
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 00:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01314 gntK_FGGY gluconate 100.0 3.9E-87 8.4E-92 713.6 41.8 433 1-487 47-499 (505)
2 PRK15027 xylulokinase; Provisi 100.0 3.7E-86 8E-91 702.6 41.7 429 1-485 47-483 (484)
3 PLN02669 xylulokinase 100.0 2.8E-82 6E-87 678.9 44.3 476 1-487 68-555 (556)
4 PRK00047 glpK glycerol kinase; 100.0 2.4E-82 5.3E-87 675.5 38.8 423 1-483 52-496 (498)
5 TIGR01315 5C_CHO_kinase FGGY-f 100.0 2.2E-82 4.8E-87 680.8 37.7 439 1-484 47-540 (541)
6 PRK10939 autoinducer-2 (AI-2) 100.0 5.7E-82 1.2E-86 675.8 38.6 431 1-484 52-505 (520)
7 PTZ00294 glycerol kinase-like 100.0 1.8E-81 3.9E-86 669.5 38.9 425 1-482 49-499 (504)
8 TIGR01312 XylB D-xylulose kina 100.0 3.7E-81 7.9E-86 665.2 40.7 426 1-479 45-481 (481)
9 TIGR01234 L-ribulokinase L-rib 100.0 4.2E-81 9.2E-86 671.0 39.6 440 1-482 60-531 (536)
10 PRK04123 ribulokinase; Provisi 100.0 3.9E-81 8.4E-86 673.7 38.8 441 1-481 57-533 (548)
11 PRK10331 L-fuculokinase; Provi 100.0 6.3E-81 1.4E-85 660.2 37.6 409 1-469 51-469 (470)
12 PLN02295 glycerol kinase 100.0 8E-81 1.7E-85 665.4 37.8 423 1-482 47-505 (512)
13 TIGR01311 glycerol_kin glycero 100.0 4.6E-80 1E-84 657.2 38.4 421 1-482 48-491 (493)
14 COG1070 XylB Sugar (pentulose 100.0 2.1E-78 4.6E-83 644.1 39.9 436 1-487 52-500 (502)
15 TIGR02628 fuculo_kin_coli L-fu 100.0 1.2E-77 2.6E-82 634.0 36.6 401 1-455 50-465 (465)
16 PRK10640 rhaB rhamnulokinase; 100.0 3.7E-75 8E-80 614.6 34.5 412 2-480 38-466 (471)
17 COG0554 GlpK Glycerol kinase [ 100.0 6E-73 1.3E-77 566.5 34.4 421 2-482 53-494 (499)
18 COG1069 AraB Ribulose kinase [ 100.0 9.6E-69 2.1E-73 543.5 33.0 441 1-486 51-530 (544)
19 TIGR02627 rhamnulo_kin rhamnul 100.0 4.7E-69 1E-73 567.2 31.5 385 2-442 50-446 (454)
20 KOG2531 Sugar (pentulose and h 100.0 3E-60 6.5E-65 467.5 33.4 471 1-481 68-544 (545)
21 KOG2517 Ribulose kinase and re 100.0 1.2E-56 2.7E-61 459.4 29.2 424 2-483 55-508 (516)
22 PF00370 FGGY_N: FGGY family o 100.0 6.2E-43 1.3E-47 339.6 14.2 196 1-220 47-245 (245)
23 PF02782 FGGY_C: FGGY family o 100.0 7.1E-31 1.5E-35 246.5 16.0 180 229-425 1-197 (198)
24 TIGR00241 CoA_E_activ CoA-subs 98.5 4.3E-07 9.3E-12 88.4 10.4 70 348-421 177-248 (248)
25 PRK13317 pantothenate kinase; 97.7 0.00098 2.1E-08 65.7 14.7 167 227-423 97-273 (277)
26 COG1924 Activator of 2-hydroxy 97.7 0.00027 5.8E-09 70.8 10.2 129 267-424 258-390 (396)
27 TIGR03192 benz_CoA_bzdQ benzoy 97.6 0.00039 8.6E-09 68.4 10.4 132 268-425 156-289 (293)
28 TIGR03286 methan_mark_15 putat 97.5 0.0011 2.4E-08 67.9 11.4 128 268-422 271-401 (404)
29 TIGR02259 benz_CoA_red_A benzo 97.4 0.0017 3.8E-08 65.9 11.6 128 269-422 299-432 (432)
30 TIGR02261 benz_CoA_red_D benzo 97.1 0.0032 6.9E-08 61.2 10.1 128 268-422 128-262 (262)
31 PRK13410 molecular chaperone D 97.0 0.0026 5.7E-08 70.5 8.8 75 351-425 301-377 (668)
32 CHL00094 dnaK heat shock prote 96.8 0.0036 7.8E-08 69.1 8.7 50 376-425 327-377 (621)
33 PTZ00186 heat shock 70 kDa pre 96.7 0.0061 1.3E-07 67.4 9.0 76 350-425 325-402 (657)
34 TIGR02529 EutJ ethanolamine ut 96.6 0.0038 8.2E-08 60.4 6.0 66 351-420 172-238 (239)
35 PRK15080 ethanolamine utilizat 96.6 0.0067 1.5E-07 59.7 7.6 68 350-421 198-266 (267)
36 PRK00290 dnaK molecular chaper 96.4 0.012 2.6E-07 65.1 8.8 76 350-425 298-375 (627)
37 PRK05183 hscA chaperone protei 96.3 0.012 2.5E-07 64.9 8.6 77 349-425 299-377 (616)
38 TIGR01991 HscA Fe-S protein as 96.2 0.018 3.9E-07 63.3 8.8 76 350-425 284-361 (599)
39 PRK13928 rod shape-determining 96.1 0.015 3.3E-07 59.1 7.5 75 350-424 244-323 (336)
40 TIGR02350 prok_dnaK chaperone 96.1 0.017 3.7E-07 63.5 8.3 76 350-425 296-373 (595)
41 TIGR00555 panK_eukar pantothen 96.1 0.18 3.9E-06 49.7 14.3 162 229-420 104-278 (279)
42 PF00012 HSP70: Hsp70 protein; 96.0 0.014 3E-07 64.1 7.3 75 351-425 301-377 (602)
43 PRK01433 hscA chaperone protei 96.0 0.026 5.6E-07 61.9 9.2 75 350-425 282-357 (595)
44 PF03702 UPF0075: Uncharacteri 96.0 0.052 1.1E-06 55.5 10.6 87 349-441 258-350 (364)
45 PLN03184 chloroplast Hsp70; Pr 95.8 0.028 6E-07 62.6 8.4 72 354-425 341-414 (673)
46 PTZ00400 DnaK-type molecular c 95.6 0.023 4.9E-07 63.2 6.9 75 351-425 340-416 (663)
47 PTZ00009 heat shock 70 kDa pro 95.6 0.03 6.5E-07 62.2 7.8 75 351-425 305-382 (653)
48 PRK09585 anmK anhydro-N-acetyl 95.6 0.05 1.1E-06 55.6 8.7 76 349-426 260-340 (365)
49 PRK13411 molecular chaperone D 95.3 0.039 8.6E-07 61.2 7.3 75 351-425 300-377 (653)
50 PRK13927 rod shape-determining 95.2 0.051 1.1E-06 55.1 7.2 74 351-424 246-324 (334)
51 PRK11678 putative chaperone; P 95.1 0.11 2.4E-06 55.0 9.4 72 351-424 375-447 (450)
52 TIGR00904 mreB cell shape dete 95.1 0.064 1.4E-06 54.4 7.5 75 350-424 248-327 (333)
53 PRK13930 rod shape-determining 95.0 0.047 1E-06 55.3 6.4 74 351-424 250-328 (335)
54 PRK13929 rod-share determining 94.5 0.083 1.8E-06 53.7 6.6 68 354-421 251-323 (335)
55 KOG0103 Molecular chaperones H 94.3 0.11 2.5E-06 56.0 7.2 76 350-425 305-382 (727)
56 TIGR01175 pilM type IV pilus a 93.8 0.19 4.1E-06 51.2 7.6 60 351-410 253-315 (348)
57 PLN02920 pantothenate kinase 1 93.7 2.7 5.8E-05 43.3 15.5 168 228-423 167-351 (398)
58 COG0533 QRI7 Metal-dependent p 93.7 0.94 2E-05 45.6 11.9 195 194-425 92-311 (342)
59 COG2377 Predicted molecular ch 93.6 0.37 8E-06 48.7 9.0 75 349-425 264-344 (371)
60 PF11104 PilM_2: Type IV pilus 93.5 0.11 2.5E-06 52.8 5.4 60 350-409 244-306 (340)
61 PRK09472 ftsA cell division pr 92.1 0.37 8E-06 50.6 7.0 61 349-409 292-360 (420)
62 PRK14878 UGMP family protein; 92.1 0.31 6.6E-06 49.3 6.1 76 349-425 213-291 (323)
63 PRK09604 UGMP family protein; 92.0 0.33 7.1E-06 49.3 6.3 77 349-425 226-309 (332)
64 TIGR01174 ftsA cell division p 92.0 0.42 9.1E-06 49.3 7.2 61 350-410 285-347 (371)
65 COG0443 DnaK Molecular chapero 91.9 0.61 1.3E-05 51.0 8.6 50 376-425 308-358 (579)
66 TIGR00143 hypF [NiFe] hydrogen 91.1 0.33 7.2E-06 54.2 5.6 75 349-423 630-711 (711)
67 PTZ00340 O-sialoglycoprotein e 91.0 0.48 1E-05 48.2 6.2 75 350-425 236-313 (345)
68 PF01869 BcrAD_BadFG: BadF/Bad 90.3 1.1 2.4E-05 43.9 7.9 71 352-422 193-271 (271)
69 KOG0100 Molecular chaperones G 90.3 0.86 1.9E-05 46.5 7.0 50 376-425 361-412 (663)
70 PF06723 MreB_Mbl: MreB/Mbl pr 89.0 0.38 8.1E-06 48.6 3.6 67 355-421 247-318 (326)
71 TIGR03281 methan_mark_12 putat 88.3 1.5 3.3E-05 43.3 7.0 68 353-424 241-311 (326)
72 TIGR03723 bact_gcp putative gl 88.0 1.4 3E-05 44.5 6.9 76 349-425 231-309 (314)
73 TIGR03722 arch_KAE1 universal 86.8 1.4 3.1E-05 44.4 6.3 74 349-423 214-290 (322)
74 KOG0101 Molecular chaperones H 86.7 1.9 4.1E-05 46.9 7.3 71 351-425 311-384 (620)
75 PF02543 CmcH_NodU: Carbamoylt 85.9 1.5 3.2E-05 45.1 5.9 73 349-425 134-214 (360)
76 COG2192 Predicted carbamoyl tr 85.9 1.8 4E-05 46.0 6.5 74 349-425 260-336 (555)
77 TIGR00329 gcp_kae1 metallohydr 85.8 1.1 2.3E-05 45.0 4.7 61 349-409 230-293 (305)
78 PRK00976 hypothetical protein; 85.2 3.8 8.2E-05 41.2 8.1 70 351-425 241-312 (326)
79 PLN02902 pantothenate kinase 85.0 21 0.00045 40.6 14.4 168 228-423 216-400 (876)
80 PRK09605 bifunctional UGMP fam 84.7 2.2 4.8E-05 46.2 6.9 75 349-423 217-298 (535)
81 PF07318 DUF1464: Protein of u 84.6 3 6.5E-05 42.1 7.1 78 353-438 239-325 (343)
82 PF03630 Fumble: Fumble ; Int 84.3 6.4 0.00014 40.1 9.5 166 228-421 158-339 (341)
83 COG3426 Butyrate kinase [Energ 79.5 5.2 0.00011 39.2 6.3 62 352-413 269-335 (358)
84 KOG1794 N-Acetylglucosamine ki 77.8 9.9 0.00022 37.4 7.7 75 351-425 234-317 (336)
85 TIGR00241 CoA_E_activ CoA-subs 77.1 2.2 4.9E-05 41.2 3.3 36 1-36 32-69 (248)
86 KOG0102 Molecular chaperones m 72.6 5.2 0.00011 42.5 4.7 50 376-425 352-402 (640)
87 COG4972 PilM Tfp pilus assembl 71.8 10 0.00022 38.1 6.2 61 350-410 257-320 (354)
88 COG0068 HypF Hydrogenase matur 71.7 10 0.00022 41.7 6.8 75 349-423 665-746 (750)
89 PRK03011 butyrate kinase; Prov 69.9 18 0.0004 37.1 8.0 67 352-418 268-341 (358)
90 COG2971 Predicted N-acetylgluc 69.3 1.1E+02 0.0024 30.5 12.8 68 353-425 224-292 (301)
91 PF03727 Hexokinase_2: Hexokin 62.4 8.7 0.00019 37.1 3.8 45 381-425 189-241 (243)
92 PRK14101 bifunctional glucokin 62.3 19 0.0004 40.1 6.8 82 354-438 249-344 (638)
93 COG1077 MreB Actin-like ATPase 61.9 11 0.00024 37.7 4.3 62 350-411 252-317 (342)
94 KOG1369 Hexokinase [Carbohydra 61.4 17 0.00037 38.5 5.9 75 351-425 377-467 (474)
95 KOG0104 Molecular chaperones G 59.2 24 0.00051 39.3 6.5 48 377-424 364-413 (902)
96 PRK13310 N-acetyl-D-glucosamin 58.9 50 0.0011 32.7 8.7 50 191-245 88-142 (303)
97 COG4820 EutJ Ethanolamine util 56.8 27 0.00059 32.6 5.6 66 354-423 207-273 (277)
98 PRK09557 fructokinase; Reviewe 56.1 36 0.00079 33.7 7.1 66 353-422 224-299 (301)
99 COG0849 ftsA Cell division ATP 55.4 33 0.00072 35.9 6.8 62 349-410 291-353 (418)
100 PRK13327 pantothenate kinase; 54.6 2.1E+02 0.0045 27.6 13.4 67 349-425 171-239 (242)
101 PTZ00297 pantothenate kinase; 52.0 45 0.00097 40.8 8.0 75 348-422 1362-1444(1452)
102 PRK05082 N-acetylmannosamine k 51.5 70 0.0015 31.4 8.3 68 352-423 212-287 (291)
103 PTZ00107 hexokinase; Provision 50.8 42 0.00091 35.7 6.8 57 185-243 193-254 (464)
104 PRK12408 glucokinase; Provisio 48.1 60 0.0013 32.9 7.3 67 353-423 251-332 (336)
105 PF01968 Hydantoinase_A: Hydan 48.0 14 0.0003 36.8 2.6 72 349-420 208-283 (290)
106 PRK00180 acetate kinase A/prop 45.4 53 0.0011 34.3 6.4 50 353-402 297-349 (402)
107 TIGR00016 ackA acetate kinase. 45.2 56 0.0012 34.1 6.5 49 354-402 302-353 (404)
108 KOG2707 Predicted metalloprote 44.6 61 0.0013 32.9 6.3 54 349-402 272-330 (405)
109 PRK00292 glk glucokinase; Prov 41.6 77 0.0017 31.6 6.9 69 352-424 232-315 (316)
110 PRK09698 D-allose kinase; Prov 41.1 1.4E+02 0.0031 29.3 8.7 69 352-424 215-296 (302)
111 TIGR00744 ROK_glcA_fam ROK fam 39.2 74 0.0016 31.6 6.3 50 191-245 89-143 (318)
112 PLN02405 hexokinase 37.6 78 0.0017 34.0 6.4 57 185-243 204-261 (497)
113 PLN02914 hexokinase 37.5 82 0.0018 33.8 6.5 57 185-243 204-261 (490)
114 PF00814 Peptidase_M22: Glycop 37.5 48 0.001 32.5 4.5 59 351-409 195-255 (268)
115 PLN02596 hexokinase-like 37.1 1E+02 0.0022 33.1 7.2 52 190-243 209-261 (490)
116 cd00012 ACTIN Actin; An ubiqui 36.6 14 0.00029 38.0 0.5 49 377-425 289-348 (371)
117 PRK13329 pantothenate kinase; 35.6 1.8E+02 0.0038 28.2 8.0 67 349-424 178-246 (249)
118 PRK13328 pantothenate kinase; 35.1 1.7E+02 0.0038 28.4 8.0 67 349-424 185-253 (255)
119 KOG3530 FERM domain protein EH 34.7 57 0.0012 35.2 4.7 76 386-477 101-176 (616)
120 PRK13917 plasmid segregation p 33.0 1.2E+02 0.0026 30.9 6.7 45 376-423 290-335 (344)
121 PRK13326 pantothenate kinase; 33.0 1.7E+02 0.0037 28.6 7.5 64 349-421 187-252 (262)
122 TIGR02707 butyr_kinase butyrat 32.5 1.8E+02 0.004 29.7 8.0 58 353-410 267-328 (351)
123 PRK07058 acetate kinase; Provi 32.3 94 0.002 32.3 5.7 48 354-402 294-344 (396)
124 PRK12379 propionate/acetate ki 32.3 1.1E+02 0.0023 31.9 6.1 49 353-402 292-343 (396)
125 TIGR03739 PRTRC_D PRTRC system 32.0 2E+02 0.0044 28.7 8.2 51 368-420 264-316 (320)
126 PF06406 StbA: StbA protein; 30.8 1.6E+02 0.0034 29.6 7.1 46 367-414 262-310 (318)
127 TIGR00671 baf pantothenate kin 29.4 77 0.0017 30.6 4.4 41 349-390 177-219 (243)
128 COG5012 Predicted cobalamin bi 28.8 63 0.0014 30.7 3.5 45 358-402 165-211 (227)
129 PRK07157 acetate kinase; Provi 28.5 1.3E+02 0.0028 31.3 6.0 50 353-402 294-346 (400)
130 KOG2201 Pantothenate kinase Pa 28.2 2.1E+02 0.0047 28.9 7.1 55 348-402 275-330 (371)
131 TIGR03492 conserved hypothetic 28.2 1.4E+02 0.0031 30.9 6.5 62 349-415 64-126 (396)
132 TIGR00749 glk glucokinase, pro 27.4 82 0.0018 31.5 4.4 63 353-419 239-316 (316)
133 PRK13331 pantothenate kinase; 27.4 2.3E+02 0.005 27.5 7.3 66 349-422 175-247 (251)
134 PTZ00288 glucokinase 1; Provis 27.1 2E+02 0.0044 30.1 7.3 49 377-425 323-391 (405)
135 PLN02666 5-oxoprolinase 25.9 2E+02 0.0044 34.8 7.7 73 349-423 455-533 (1275)
136 COG2012 RPB5 DNA-directed RNA 25.8 1.1E+02 0.0024 23.9 3.7 32 164-205 27-59 (80)
137 PRK12440 acetate kinase; Revie 25.7 1.5E+02 0.0032 30.9 5.8 49 353-402 295-346 (397)
138 PRK13321 pantothenate kinase; 25.0 93 0.002 30.2 4.1 66 349-423 185-252 (256)
139 PF11527 ARL2_Bind_BART: The A 24.2 58 0.0013 27.7 2.2 33 447-484 31-63 (121)
140 COG1940 NagC Transcriptional r 23.0 2.1E+02 0.0046 28.3 6.4 50 193-247 100-154 (314)
141 PRK13320 pantothenate kinase; 22.5 3.5E+02 0.0076 26.0 7.6 65 349-421 175-239 (244)
142 smart00268 ACTIN Actin. ACTIN 21.9 69 0.0015 32.7 2.7 47 378-424 292-347 (373)
143 PRK09570 rpoH DNA-directed RNA 21.9 1.1E+02 0.0025 24.0 3.2 34 164-207 24-58 (79)
144 KOG2853 Possible oxidoreductas 21.4 3.1E+02 0.0066 28.2 6.8 64 349-412 35-123 (509)
145 COG1058 CinA Predicted nucleot 21.1 1.4E+02 0.003 29.1 4.4 30 378-407 61-92 (255)
146 PRK12397 propionate kinase; Re 21.1 2.3E+02 0.0049 29.6 6.2 49 353-401 296-346 (404)
147 PRK13318 pantothenate kinase; 21.1 1.2E+02 0.0027 29.3 4.1 66 349-423 185-252 (258)
148 PRK14717 putative glycine/sarc 21.1 92 0.002 25.5 2.6 35 193-228 10-44 (107)
149 PRK13322 pantothenate kinase; 21.0 4.3E+02 0.0093 25.4 7.8 65 349-423 177-243 (246)
150 KOG1367 3-phosphoglycerate kin 20.5 1.6E+02 0.0034 29.6 4.5 54 192-248 354-407 (416)
No 1
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=3.9e-87 Score=713.57 Aligned_cols=433 Identities=18% Similarity=0.258 Sum_probs=395.5
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.||++++.+++++.++ .+ ++|.+||||+||+++++||++|+| | +|+|+|+|+|+.++
T Consensus 47 ~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~~~~~v~~D~~g~p----------l----------~~~i~w~D~R~~~~ 105 (505)
T TIGR01314 47 EIFEAVLVTIREVSINLEDE-DEILFVSFSTQMHSLIAFDENWQP----------L----------TRLITWADNRAVKY 105 (505)
T ss_pred HHHHHHHHHHHHHHHhCCCc-CceEEEEEecccceeEEECCCcCC----------c----------ccceeccccchHHH
Confidence 3899999999998765 33 679999999999999999999996 7 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccC
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIR 158 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~ 158 (488)
++++.+.++ .++++++||+++++.++++||+|+++|+|++|+++++|++++|||.|+|||+.+ +|+|+||+|++||++
T Consensus 106 ~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~ 183 (505)
T TIGR01314 106 AEQIKESKN-GFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAAKYLEIKGYIFQRLFGTYK-IDYSTASATGMFNLF 183 (505)
T ss_pred HHHHHhhcC-HHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhcEEECHHHHHHHHHcCCce-eEhhhhhhhcceeCC
Confidence 999998764 477999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccc
Q 011357 159 QRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSD 237 (488)
Q Consensus 159 ~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~ 237 (488)
+++|++++++.+| + .++||+|+++++++|+|++++|+++||++||||++|++|++|+++|+|+.++|++++++|||+
T Consensus 184 ~~~W~~ell~~~gi~--~~~lP~l~~~g~~iG~l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~ 261 (505)
T TIGR01314 184 ELDWDKEALELTGIK--ESQLPKLVPTTEIEENLPHEYAKKMGIQSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSG 261 (505)
T ss_pred CCCCCHHHHHhcCCC--HHHCCCCcCcccccCCcCHHHHHHhCCCCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhh
Confidence 9999999999999 7 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHhcC-----------ccHHHHHHHHhcCCCCCCCe
Q 011357 238 TVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE-----------KSWDVFNKYLQQTPPLNGGK 306 (488)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~-----------~~~~~l~~~a~~~~~g~~gl 306 (488)
++.+++++|..++....+++.+.++.|+.++.++++|.+++|+++.+.. ..|+.|+++++++|||++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl 341 (505)
T TIGR01314 262 AIRTVIDKPKTDEKGRIFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGL 341 (505)
T ss_pred eeeeccCcCccCCCCceEEEEecCCcEEEEeeecchHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCce
Confidence 9998888877665554456544457899999999999999999987631 35899999999999999999
Q ss_pred EeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCe
Q 011357 307 MGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRR 380 (488)
Q Consensus 307 ~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~ 380 (488)
+|+|||.|+|+|. +++|.| |++. .|+++||+||++|||||.++.+++.+.+ +.++++
T Consensus 342 ~~~P~l~G~r~P~~~~~~rg~f~Gl~~-----------------~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~ 404 (505)
T TIGR01314 342 LFHPYLAGERAPLWNANARGSFFGLTY-----------------SHKKEHMIRAALEGVIYNLYTVALALVEVMGDPLNM 404 (505)
T ss_pred EEecccccCCCCCCCCCccEEEECCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 9999999999996 456655 5443 3599999999999999999999998864 677899
Q ss_pred EEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCc
Q 011357 381 IIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGD 460 (488)
Q Consensus 381 i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~ 460 (488)
|+++||++||++|+||+|||+|+||++.+..|++++|||++|+++ +|.+++++++ .+ +.+..++|+|++++
T Consensus 405 i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~~-----~G~~~~~~~~-~~-~~~~~~~~~P~~~~-- 475 (505)
T TIGR01314 405 IQATGGFASSEVWRQMMSDIFEQEIVVPESYESSCLGACILGLKA-----LGLIEDFSEV-ST-MVGTTETHTPIEKN-- 475 (505)
T ss_pred EEEecCcccCHHHHHHHHHHcCCeeEecCCCCcchHHHHHHHHHh-----cCccCCHHHH-HH-hcCCCceECcCHHH--
Confidence 999999999999999999999999999999999999999999999 9999999987 33 56888999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 011357 461 QQLVSKYAVMMKKRLEIENRLVEKLGR 487 (488)
Q Consensus 461 ~~~~~~Y~~~y~~y~~~~~~l~~~~~~ 487 (488)
++.|+++|++|+++|+++++.|++
T Consensus 476 ---~~~Y~~~y~~y~~~~~~~~~~~~~ 499 (505)
T TIGR01314 476 ---FEIYREISPIFINLSRSLLAEYEQ 499 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 2
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=3.7e-86 Score=702.55 Aligned_cols=429 Identities=20% Similarity=0.281 Sum_probs=387.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHH
Q 011357 1 MWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 80 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~ 80 (488)
+||++++++++++.++...++|.+||||+|+|+++++|++|+| | +|+|+|+|+|+.++++
T Consensus 47 ~~w~~~~~~~~~l~~~~~~~~I~aI~is~q~~~~v~~D~~g~~----------l----------~p~i~w~D~R~~~~~~ 106 (484)
T PRK15027 47 QWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRV----------L----------RPAILWNDGRCAQECA 106 (484)
T ss_pred HHHHHHHHHHHHHHHhCCccceeEEEEecCCCceEEECCCcCC----------c----------cccccccCccHHHHHH
Confidence 4999999999998765455789999999999999999999995 7 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCCC
Q 011357 81 EIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQR 160 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~ 160 (488)
++.+..+ .++++||+++++.++++||+|+|+|+||+|+|+++|++++|||.|+|||+.+ +|+|+||+|++||++++
T Consensus 107 ~l~~~~~---~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~as~t~l~d~~~~ 182 (484)
T PRK15027 107 LLEARVP---QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFA-SDMSDAAGTMWLDVAKR 182 (484)
T ss_pred HHHHhcc---hhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhhcChHHHHHhhhcCCcc-ccHHHhhcccccccccC
Confidence 9988753 4678999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred CccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 161 VWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 161 ~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
+|++++++.+| + .++||+++++++++|+|++++|+++||+ +|||++|++|++|+++|+|+.++|++++++|||+++
T Consensus 183 ~w~~~ll~~~gi~--~~~lP~v~~~~~~~G~l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~ 259 (484)
T PRK15027 183 DWSDVMLQACHLS--RDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVY 259 (484)
T ss_pred CCcHHHHHHhCCC--HHHCCCCCCCccccccccHHHHHHhCCC-CCeEEecccHHHHHHhccCcccCCcEEEEecCceEE
Confidence 99999999999 7 7999999999999999999999999997 699999999999999999999999999999999998
Q ss_pred ccccCCCCCCCcc--ccccCccCCCcEEEeeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCC
Q 011357 240 FGITDDPEPRLEG--HVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEIL 317 (488)
Q Consensus 240 ~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~ 317 (488)
..+++++..++.. ..+++ ..||.|++++...++|.+++|+++.+....|+++.+.++++|||++|++|+|||.|+|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~ 338 (484)
T PRK15027 260 FAVSEGFLSKPESAVHSFCH-ALPQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERT 338 (484)
T ss_pred EEecCCcccCchhceeecce-ecCCceEEEEEehhhHHHHHHHHHHhCCccHHHHHHHHhhCCCCCCceEEecccccCCC
Confidence 8888877655432 23555 34889999999999999999999988655688887888899999999999999999999
Q ss_pred CC---CCCcceeeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHH
Q 011357 318 PP---LPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTI 393 (488)
Q Consensus 318 P~---~a~G~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~ 393 (488)
|. ++||.| +|++ ..|+++||+||++|||||.+|++++.|++ |.++++|+++||++||++|
T Consensus 339 P~~~~~arg~f------------~gl~----~~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w 402 (484)
T PRK15027 339 PHNNPQAKGVF------------FGLT----HQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYW 402 (484)
T ss_pred cCCCCCcceEE------------ECCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHH
Confidence 97 456655 3333 34699999999999999999999999986 7788999999999999999
Q ss_pred HHHHHhHhCCceEeec-CCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhhHHHHHHHHH
Q 011357 394 LSCLASIYGCDIYTVQ-RPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMK 472 (488)
Q Consensus 394 ~Qi~Advlg~pV~~~~-~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~ 472 (488)
+||+||++|+||++.. ..|++++|||++|+++ +|.++|++++.+ +.+..++|+|++++ ++.|+++|+
T Consensus 403 ~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~-----~G~~~~~~~~~~--~~~~~~~~~P~~~~-----~~~Y~~~~~ 470 (484)
T PRK15027 403 RQMLADISGQQLDYRTGGDVGPALGAARLAQIA-----ANPEKSLIELLP--QLPLEQSHLPDAQR-----YAAYQPRRE 470 (484)
T ss_pred HHHHHHHhCCeEEeecCCCcchHHHHHHHHHHh-----cCCcCCHHHHHh--hcCCCceECCCHHH-----HHHHHHHHH
Confidence 9999999999997655 4458899999999999 999999998764 34788899999999 999999999
Q ss_pred HHHHHHHHHHHHh
Q 011357 473 KRLEIENRLVEKL 485 (488)
Q Consensus 473 ~y~~~~~~l~~~~ 485 (488)
+|+++|++++++|
T Consensus 471 ~y~~~y~~~~~~~ 483 (484)
T PRK15027 471 TFRRLYQQLLPLM 483 (484)
T ss_pred HHHHHHHHHhHhh
Confidence 9999999999876
No 3
>PLN02669 xylulokinase
Probab=100.00 E-value=2.8e-82 Score=678.86 Aligned_cols=476 Identities=76% Similarity=1.216 Sum_probs=406.7
Q ss_pred CHHHHHHHHHHHHhhc-CCCCCeeEEEEcccccceeeecC-CCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS-LDLSKVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~-~~~~~I~aIgis~~~~~~v~~d~-~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
+||++++.+++++.++ ++.++|+||++|+|+|++|+||+ .|+| ++.+|++.+|.+||.+.|+.+|+|+|+|+|+.++
T Consensus 68 ~w~~al~~~l~~l~~~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~-L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e 146 (556)
T PLN02669 68 MWVEALDLLLQKLAKEKFPFHKVVAISGSGQQHGSVYWRKGASAV-LKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQ 146 (556)
T ss_pred HHHHHHHHHHHHHHHcCCChhhEEEEEecCCcceEEEecCCCCcc-ccccccccchhhhhhhhhcCCCCcccCCccHHHH
Confidence 4889999999998765 67889999999999999999999 5887 5678998888899999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccC
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIR 158 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~ 158 (488)
++++.+.+++.++++++||+++++.|+++||+|+++|+||+|+++.+|+.++|||.|+|||+.+.+|+|+||+|+|||++
T Consensus 147 ~~~l~~~~gg~~~l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sdasg~~l~Di~ 226 (556)
T PLN02669 147 CREIEEAVGGAAELSKLTGSRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETDGAGMNLMDIE 226 (556)
T ss_pred HHHHHHHcCcHHHHHHHHCCcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchhhhhhhhhccc
Confidence 99999887656789999999999999999999999999999999999999999999999999634999999999999999
Q ss_pred CCCccHHHHHHcCcchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEeccccc
Q 011357 159 QRVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDT 238 (488)
Q Consensus 159 ~~~W~~~ll~~~g~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~ 238 (488)
+++||+++|+.+|+++.++||+++++++++|+|++++|+++||++||||++|++|++|+++|+|+.++|++.+|+|||++
T Consensus 227 ~~~Ws~~ll~~~~~~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~ 306 (556)
T PLN02669 227 KRCWSKAALEATAPGLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDT 306 (556)
T ss_pred cCCcCHHHHHhhCccHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccce
Confidence 99999999999974446899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCC
Q 011357 239 VFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILP 318 (488)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P 318 (488)
+.++++++.+++.++.++|++.||.|+.+++..+||.+++|+++.+....|+.+++++.+.+||++|++++||+.||+.|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~~~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P 386 (556)
T PLN02669 307 VFGITREPQPSLEGHVFPNPVDPESYMVMLCYKNGSLTREDIRNRCADGSWDVFNKLLEQTPPLNGGKLGFYYKEHEILP 386 (556)
T ss_pred EEEecCCCCCCCCcceeeCccCCCCeEEEEEecchHHHHHHHHHHhccCcHHHHHHHHHhCCCCCCCEEEeeccCcccCC
Confidence 99998888887766667776668999999999999999999999986567999999999999999999989999999999
Q ss_pred CCCCcceeeeecccccccccCcccc-----cccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHH
Q 011357 319 PLPVGFHRYILENFEGETLDGVNEV-----EVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTI 393 (488)
Q Consensus 319 ~~a~G~~~l~~~~~~~~~~~g~~~~-----~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~ 393 (488)
....+. ..+.+|.|.|++.. .+..|+++|++|||+||++|++|.+++.|+.+.++++|+++||+|+|+.|
T Consensus 387 ~~~~~~-----~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~~~~~~~~i~~~GGgs~s~~w 461 (556)
T PLN02669 387 PLPVGF-----HRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIATGGASANQSI 461 (556)
T ss_pred CCCCcc-----chhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcChhcCHHH
Confidence 622221 12222333333311 11237999999999999999999999999755678999999999999999
Q ss_pred HHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhccc--CCcee--eccc-cCCchhhHHHHH
Q 011357 394 LSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEK--TSLSC--KLAV-TAGDQQLVSKYA 468 (488)
Q Consensus 394 ~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~--~~~~~--~P~~-~~~~~~~~~~Y~ 468 (488)
+||+|||||+||++++..|++++|||++|++++.++..+.+..+++.....+.. ....+ +|.+ +. .+.|.
T Consensus 462 ~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~y~ 536 (556)
T PLN02669 462 LKLIASIFGCDVYTVQRPDSASLGAALRAAHGWLCNEQGSFVPISCLYEGKLEATSLSCKLAVKAGDQEL-----LSQYG 536 (556)
T ss_pred HHHHHHHcCCCeEecCCCCchHHHHHHHHHHHHhhhhhcccCChhhhcccccccCcccceeeccCCCccH-----HHHHH
Confidence 999999999999999999999999999999996554333333333332211111 11112 4544 44 89999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 011357 469 VMMKKRLEIENRLVEKLGR 487 (488)
Q Consensus 469 ~~y~~y~~~~~~l~~~~~~ 487 (488)
.+.++|.++.+.+....++
T Consensus 537 ~~~~~~~~~~~~~~~~~~~ 555 (556)
T PLN02669 537 LLMKKRMEIEQQLVEKLGR 555 (556)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999988776543
No 4
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=2.4e-82 Score=675.53 Aligned_cols=423 Identities=17% Similarity=0.182 Sum_probs=372.9
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ .++++|.+||+|+|++++++||++ |+| | +|+|+|+|+|+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~~~v~~D~~~G~p----------l----------~~~i~w~D~Ra~~ 111 (498)
T PRK00047 52 EIWASQLSVIAEALAKAGISPDQIAAIGITNQRETTVVWDKETGRP----------I----------YNAIVWQDRRTAD 111 (498)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHeeEEEEecCcceEEEEECCCCcC----------C----------cccceecccchHH
Confidence 3899999999998654 567889999999999999999965 995 7 8999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhCC--ccccccchhcc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIGA--YACIDETDAAG 151 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~--~~~~d~s~As~ 151 (488)
+++++.+. +..++++++||+++++.++++||+|+++|+||+|+++.+ |++++|||.|+|||. .+ +|+|+||+
T Consensus 112 ~~~~l~~~-~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~As~ 189 (498)
T PRK00047 112 ICEELKRD-GYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKLTGGKVHV-TDYTNASR 189 (498)
T ss_pred HHHHHHhc-cchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHHHHhcCCeEEeChHHhHhhhhcCCCeeE-eechHHhh
Confidence 99999876 334569999999999999999999999999999888764 788999999999975 66 99999999
Q ss_pred ccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEE
Q 011357 152 MNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLA 230 (488)
Q Consensus 152 t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~ 230 (488)
|++||+++++||+++|+.+| + .++||+|+++++++|+|+++ +|+.+||||++|++|++|+++|+|++++|+++
T Consensus 190 t~l~d~~~~~W~~ell~~~gi~--~~~lP~i~~~g~~~G~v~~~----~~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~ 263 (498)
T PRK00047 190 TMLFNIHTLDWDDELLELLDIP--RSMLPEVRPSSEVYGKTNPY----GFFGGEVPIAGIAGDQQAALFGQLCFEPGMAK 263 (498)
T ss_pred hhccccccCccCHHHHHhcCCC--HHHCCCccCCcccccccccc----ccCCCCceEEEEccHHHHHHHhCcCCCCCceE
Confidence 99999999999999999999 7 79999999999999999987 67779999999999999999999999999999
Q ss_pred EEecccccccccc-CCCCCCCcc--ccccCccCCC--cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCC
Q 011357 231 ISLGTSDTVFGIT-DDPEPRLEG--HVFPNPVDTK--GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNG 304 (488)
Q Consensus 231 ~s~GTs~~~~~~~-~~~~~~~~~--~~~~~~~~~g--~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~ 304 (488)
+++|||+++.+.+ ++|..++.. ..+++.. +| .|+.+++++++|.+++|+++++.. ..++++++++++++ +++
T Consensus 264 ~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~g~~l~W~~~~~~~~~~~~~~~~~a~~~~-~~~ 341 (498)
T PRK00047 264 NTYGTGCFMLMNTGEKAVKSENGLLTTIAWGI-DGKVVYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVE-DND 341 (498)
T ss_pred EeeccceEEEEecCCccccCCCCceeEEEEEc-CCCcEEEEEeeHhhHHHHHHHHHHHhcCCCCHHHHHHHHhcCC-CCC
Confidence 9999999877776 466655442 2244432 44 699999999999999999998853 34667788777765 888
Q ss_pred CeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcC-C-CCCC
Q 011357 305 GKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFG-L-PSPP 378 (488)
Q Consensus 305 gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~-~-g~~~ 378 (488)
|++|+|||.|+|.|. ++||.| |+++ .|+++||+||++|||||.+|++++.|+ . |.++
T Consensus 342 gl~~lP~l~G~r~P~~d~~arg~~~Gl~~-----------------~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~ 404 (498)
T PRK00047 342 GVYVVPAFTGLGAPYWDSDARGAIFGLTR-----------------GTTKEHIIRATLESIAYQTRDVLDAMQADSGIRL 404 (498)
T ss_pred CEEEeCccccCCCCCCCCCCcEEEECCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999997 466765 5544 459999999999999999999999998 3 7788
Q ss_pred CeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccC
Q 011357 379 RRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTA 458 (488)
Q Consensus 379 ~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~ 458 (488)
++|+++||++||++|+||+|||+|+||+++...|++++|||++|+++ +|.|++++++. + +.+..++|+|++++
T Consensus 405 ~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~-----~G~~~~~~~~~-~-~~~~~~~~~P~~~~ 477 (498)
T PRK00047 405 KELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLA-----VGFWKDLDELK-E-QWKIDRRFEPQMDE 477 (498)
T ss_pred ceEEEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhh-----cCcCCCHHHHH-h-hcCCCeEECCCCCH
Confidence 99999999999999999999999999999999999999999999999 99999999874 3 56788999999998
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 011357 459 GDQQLVSKYAVMMKKRLEIENRLVE 483 (488)
Q Consensus 459 ~~~~~~~~Y~~~y~~y~~~~~~l~~ 483 (488)
++ |+++|++|+++|+++.+
T Consensus 478 -----~~-y~~~~~~~~~~~~~~~~ 496 (498)
T PRK00047 478 -----EE-REKLYAGWKKAVKRTLA 496 (498)
T ss_pred -----HH-HHHHHHHHHHHHHHHhc
Confidence 87 99999999999997754
No 5
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=2.2e-82 Score=680.76 Aligned_cols=439 Identities=13% Similarity=0.055 Sum_probs=378.6
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.||++++++++++.++ +++++|++||||+| +++++||++|+|+....|. +|. +|+|+|+|+|+.++
T Consensus 47 ~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~-~s~v~~D~~g~pl~~~~~~-~~~----------~~~i~W~D~Ra~~~ 114 (541)
T TIGR01315 47 YIWQAICNCVKQVLAESKVDPNSVKGIGFDAT-CSLVVLTHDGEPLPVSKNG-GAD----------QNIILWMDHRALAE 114 (541)
T ss_pred HHHHHHHHHHHHHHHHcCCChhheEEEEeccc-ccceEEcCCCCeeecCCCC-Ccc----------cceeEeecCcHHHH
Confidence 3899999999998664 56778999999999 9999999999984221111 233 69999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccc--
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMD-- 156 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d-- 156 (488)
++++.+.. ++++++||+++++.++++||+|+++|+||+|+++.+|++++|||.|+|||+.+ +|+++++.+++||
T Consensus 115 ~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~~~as~~~~~d~~ 190 (541)
T TIGR01315 115 AEKINATN---HNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFFDLTDFLTWRATGKEI-RSFCSVVCKWGFVPV 190 (541)
T ss_pred HHHHHHHH---HHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhcchhhhheeeeecchh-HhHhHHhHhhhcccc
Confidence 99997642 46899999999999999999999999999999999999999999999999988 9999999888888
Q ss_pred -cCCCCccHHHHHHcC-cch-----HhhcCCcccCCccccc-ccHHHHHHcCCCCCCeEEeccChhHHhhhccCC---CC
Q 011357 157 -IRQRVWSKIVLEATA-PSL-----EEKLGKLAPAHAVAGC-IAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTL---ST 225 (488)
Q Consensus 157 -~~~~~W~~~ll~~~g-~~~-----~~~LP~i~~~~~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~---~~ 225 (488)
+++++||+++++.+| +++ .++||+++++++++|+ |++++|+++||++||||++|++|++|+++|+|+ .+
T Consensus 191 d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~ 270 (541)
T TIGR01315 191 DGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAE 270 (541)
T ss_pred ccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccc
Confidence 699999999999999 521 1234999999999999 999999999999999999999999999999975 67
Q ss_pred CC-------cEEEEeccccccccccCCCCCCCcccc-c-cCccCCCcEEEeeeeechhhHHHHHHHHhc----------C
Q 011357 226 SG-------DLAISLGTSDTVFGITDDPEPRLEGHV-F-PNPVDTKGYMIMLVYKNASLTREDVRNRCA----------E 286 (488)
Q Consensus 226 ~g-------~~~~s~GTs~~~~~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~----------~ 286 (488)
+| ++++++|||+++..+.++|..++.... + ++ ..+|.|++++.++++|.+++|+++.+. .
T Consensus 271 ~g~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~ 349 (541)
T TIGR01315 271 NGDVSQAFTRLAAVAGTSTCHMAMTKGPVFVPGVWGPYRDA-LIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEA 349 (541)
T ss_pred cccccCCCCcEEEEecCceEEEEecCCCccCCceeecccCc-cCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHh
Confidence 76 889999999998888877765554322 2 33 348899999999999999999998752 0
Q ss_pred ---ccHHHHHH----HHhcCCCC-----CCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCCh
Q 011357 287 ---KSWDVFNK----YLQQTPPL-----NGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDP 350 (488)
Q Consensus 287 ---~~~~~l~~----~a~~~~~g-----~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~ 350 (488)
..|+.|++ ++++.+|+ ++|++|+|||.|+|+|+ ++||.| |++++ |++
T Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~-----------------~~~ 412 (541)
T TIGR01315 350 AGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMD-----------------RSK 412 (541)
T ss_pred ccCcHHHHHHHHHHHhhhhcccCccccCCCceEEccccccCcCCCCCCCCceEEECCCCC-----------------CCh
Confidence 24655544 45556655 58999999999999997 567766 65544 477
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhcc
Q 011357 351 ---PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGY 426 (488)
Q Consensus 351 ---~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~ 426 (488)
+||+||++|||||.+|++++.|++ |.++++|+++||++||++|+||+|||+|+||++++..|++++|||++|+++
T Consensus 413 ~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~- 491 (541)
T TIGR01315 413 DGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKA- 491 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHHHHHHHHHHHh-
Confidence 899999999999999999999986 777899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCHHHHHHhhcccCCceeeccccCCchhhH-HHHHHHHHHHHHHHHHHHHH
Q 011357 427 LCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLV-SKYAVMMKKRLEIENRLVEK 484 (488)
Q Consensus 427 ~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~-~~Y~~~y~~y~~~~~~l~~~ 484 (488)
+|.|++++++.++ +++..++|+|++++ + +.|+++|++|+++|++++..
T Consensus 492 ----~G~~~~~~~a~~~-~~~~~~~~~P~~~~-----~~~~Y~~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 492 ----AGTTESLWDAMDR-MSKPGKTVWPRGDP-----AKKLHDRKYEIFLQLARTQQEY 540 (541)
T ss_pred ----cCccCCHHHHHHH-hccCCcEEcCCcch-----hHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988764 66788899999998 9 99999999999999888754
No 6
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=5.7e-82 Score=675.76 Aligned_cols=431 Identities=16% Similarity=0.185 Sum_probs=384.9
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.||++++++++++.++ +++++|.+||+|+|++++++||++|+| | .+ +.|+|+|+.++
T Consensus 52 ~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s~~~~~~v~~D~~g~p----------l----------~~-~~~~D~Ra~~~ 110 (520)
T PRK10939 52 KNWQLACQCIRQALQKAGIPASDIAAVSATSMREGIVLYDRNGTE----------I----------WA-CANVDARASRE 110 (520)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEEEECCcccEEEECCCCCE----------e----------eC-CcCCCcccHHH
Confidence 3999999999998654 567789999999999999999999996 5 44 67999999999
Q ss_pred HHHHHHHhCC-HHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhcccccccc
Q 011357 79 CREIEKAVGG-ALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDI 157 (488)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~ 157 (488)
++++.+..+. .++++++||.++ +.++++||+|+++|+||+|+|+.+|++++|||.|+|||+++ +|+|+||+|+|||+
T Consensus 111 ~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~As~tgl~d~ 188 (520)
T PRK10939 111 VSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDIYRQAHTITMISDWIAYMLSGELA-VDPSNAGTTGLLDL 188 (520)
T ss_pred HHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHHHHHhheEechhHhhhheeeCcee-eEhhhhhceeeeec
Confidence 9999887542 367899999875 67899999999999999999999999999999999999988 99999999999999
Q ss_pred CCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEeccc
Q 011357 158 RQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTS 236 (488)
Q Consensus 158 ~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs 236 (488)
++++|++++++.+| + .++||+|+++++++|+|++++|+++||++||||++|++|++|+++|+|++++|++++++|||
T Consensus 189 ~~~~W~~~ll~~~gi~--~~~lP~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs 266 (520)
T PRK10939 189 VTRDWDPALLEMAGLR--ADILPPVKETGTVLGHVTAKAAAETGLRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTF 266 (520)
T ss_pred CCCCCCHHHHHHcCCC--HHHCCCCccCCceeeeecHHHHHhhCCCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCc
Confidence 99999999999999 7 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCcc--ccccCccCCCcEEEeeeeechhhHHHHHHHHhcC-----------ccHHHHHHHHhcCCCCC
Q 011357 237 DTVFGITDDPEPRLEG--HVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE-----------KSWDVFNKYLQQTPPLN 303 (488)
Q Consensus 237 ~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~-----------~~~~~l~~~a~~~~~g~ 303 (488)
+++...++++..++.. ..+++ ..+|.|.+++.++++|.+++||++++.. ..|++|+++++++|||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~ 345 (520)
T PRK10939 267 WQQVVNLPAPVTDPNMNIRINPH-VIPGMVQAESISFFTGLTMRWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGS 345 (520)
T ss_pred ceeEEeccccccCccccceecee-eeCCcceEeeeeccceeeeehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCC
Confidence 9887877776655432 23444 3488999999999999999999997642 34899999999999999
Q ss_pred CCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCC
Q 011357 304 GGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSP 377 (488)
Q Consensus 304 ~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~ 377 (488)
+|+ +|||.|++.|. +++|.| |++++| ..|+++||+||++|||||.+|++++.|++ +.+
T Consensus 346 ~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~--------------~~~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~ 409 (520)
T PRK10939 346 HGI--IPIFSDVMRFKSWYHAAPSFINLSIDP--------------EKCNKATLFRALEENAAIVSACNLQQIAAFSGVF 409 (520)
T ss_pred CCC--cccccCCCCCCCCcccceeEEccccCc--------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 887 59999998754 567766 666553 23589999999999999999999999974 677
Q ss_pred CCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeecccc
Q 011357 378 PRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVT 457 (488)
Q Consensus 378 ~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~ 457 (488)
+++|+++||+++|++|+||+|||+|+||++++..|++++|||++|+++ +|.|+|++++.+. +.+..++|+|+++
T Consensus 410 ~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~-----~G~~~~~~~a~~~-~~~~~~~~~P~~~ 483 (520)
T PRK10939 410 PSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVG-----AGIYSSLAETGER-LVRWERTFEPNPE 483 (520)
T ss_pred CcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHHHHH-----hCCCCCHHHHHHH-HcccCceECcCHH
Confidence 899999999999999999999999999999999999999999999999 9999999988764 5677889999998
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011357 458 AGDQQLVSKYAVMMKKRLEIENRLVEK 484 (488)
Q Consensus 458 ~~~~~~~~~Y~~~y~~y~~~~~~l~~~ 484 (488)
+ ++.|+++|++|+++|+++++.
T Consensus 484 ~-----~~~y~~~y~~y~~l~~~~~~~ 505 (520)
T PRK10939 484 N-----HELYQEAKEKWQAVYADQLGL 505 (520)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHH
Confidence 8 999999999999999987754
No 7
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=1.8e-81 Score=669.48 Aligned_cols=425 Identities=20% Similarity=0.226 Sum_probs=373.2
Q ss_pred CHHHHHHHHHHHHhhc--CCCC--CeeEEEEcccccceeeecC-CCccccccCCCCCcccccccccCCCCCCccccCCCc
Q 011357 1 MWIEALDLMLQKLSKS--LDLS--KVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSST 75 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~--~I~aIgis~~~~~~v~~d~-~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra 75 (488)
.||++++++++++.++ ..+. +|++||+|+||+++++||+ +|+| | +|+|+|+|+|+
T Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis~q~~~~v~~D~~~g~p----------l----------~~~i~w~D~R~ 108 (504)
T PTZ00294 49 EILRNVYKCMNEAIKKLREKGPSFKIKAIGITNQRETVVAWDKVTGKP----------L----------YNAIVWLDTRT 108 (504)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCceEEEEeecCcceEEEEECCCCCC----------c----------ccceeecchhh
Confidence 3899999999998654 3455 7999999999999999987 6995 7 89999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhC--Cccccccchh
Q 011357 76 TAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDA 149 (488)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~d~s~A 149 (488)
.++++++.+.++..+.++++||+++++.++++||+|+++|+|++|+++++ +++++|||.|+||| +++ +|+|+|
T Consensus 109 ~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~A 187 (504)
T PTZ00294 109 YDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTNA 187 (504)
T ss_pred HHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHHHHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhhh
Confidence 99999998876532567799999999999999999999999999997665 89999999999999 887 999999
Q ss_pred ccccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCc
Q 011357 150 AGMNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGD 228 (488)
Q Consensus 150 s~t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~ 228 (488)
|+|++||+++++|++++++.+| + .++||+|+++++++|+|++ +.+|+++|+||++|++|++|+++|+|++++|+
T Consensus 188 s~tgl~D~~~~~W~~~ll~~~gi~--~~~LP~v~~~~~~~G~l~~---~~~~~~~g~pV~~g~~D~~aa~~G~g~~~~g~ 262 (504)
T PTZ00294 188 SRTFLMNIKTLKWDEELLNKFGIP--KETLPEIKSSSENFGTISG---EAVPLLEGVPITGCIGDQQAALIGHGCFEKGD 262 (504)
T ss_pred HHhhccCcccCccCHHHHHHhCCC--HHHCCCccCCccccCccch---hhcCCCCCCcEEEEecHHHHHHHhCcCCCCCc
Confidence 9999999999999999999999 7 7999999999999999994 45778899999999999999999999999999
Q ss_pred EEEEeccccccccccC-CCCCCCcc--ccccCccC---CCcEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCC
Q 011357 229 LAISLGTSDTVFGITD-DPEPRLEG--HVFPNPVD---TKGYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPP 301 (488)
Q Consensus 229 ~~~s~GTs~~~~~~~~-~~~~~~~~--~~~~~~~~---~g~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~ 301 (488)
+.+++|||+++...+. ++..++.. ..+++... |+.|++++.++++|.+++|+++.+.. .+|+++++++++++
T Consensus 263 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~- 341 (504)
T PTZ00294 263 AKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVK- 341 (504)
T ss_pred eEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCC-
Confidence 9999999998655553 44444332 22444322 44899999999999999999998752 45778888888875
Q ss_pred CCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--C
Q 011357 302 LNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--P 375 (488)
Q Consensus 302 g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g 375 (488)
|++|++|+|||.|+|.|. +++|.| |+++ .|+++||+|||+|||||.+|++++.|++ |
T Consensus 342 g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~-----------------~~~~~~i~rAvlEgia~~~r~~~~~l~~~~g 404 (504)
T PTZ00294 342 DTGGVVFVPAFSGLFAPYWRPDARGTIVGMTL-----------------KTTRAHIVRAALEAIALQTNDVIESMEKDAG 404 (504)
T ss_pred CCCCEEEeCcccCCCCCCCCCCCCEEEEccCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999999999999997 566665 5543 4599999999999999999999999984 6
Q ss_pred CCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhccc-CCceeec
Q 011357 376 SPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEK-TSLSCKL 454 (488)
Q Consensus 376 ~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~-~~~~~~P 454 (488)
.++++|+++||+++|++|+||+||++|+||+++...|++++|||++|+++ +|.|+|++++.+ +++ ..++|+|
T Consensus 405 ~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a-----~G~~~~~~~~~~--~~~~~~~~~~P 477 (504)
T PTZ00294 405 IELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLA-----VGVWKSLEEVKK--LIRRSNSTFSP 477 (504)
T ss_pred CCcceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhh-----cCccCCHHHHHH--hccCCCcEECC
Confidence 77899999999999999999999999999999999999999999999999 999999998764 334 6789999
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHH
Q 011357 455 AVTAGDQQLVSKYAVMMKKRLEIENRLV 482 (488)
Q Consensus 455 ~~~~~~~~~~~~Y~~~y~~y~~~~~~l~ 482 (488)
++++ ++ |+++|++|+++|+++-
T Consensus 478 ~~~~-----~~-y~~~~~~~~~~~~~~~ 499 (504)
T PTZ00294 478 QMSA-----EE-RKAIYKEWNKAVERSL 499 (504)
T ss_pred CCCH-----HH-HHHHHHHHHHHHHHHh
Confidence 9999 99 9999999999999754
No 8
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=3.7e-81 Score=665.20 Aligned_cols=426 Identities=24% Similarity=0.373 Sum_probs=389.4
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.||++++++++++.++ .++.+|.+||+++|++++|+||++|+| + .|+++|+|.|..++
T Consensus 45 ~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~v~~d~~g~~----------l----------~~~i~W~D~r~~~~ 104 (481)
T TIGR01312 45 DWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGLVLLDANGEV----------L----------RPAILWNDTRTAQE 104 (481)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCceeEEECCCcCC----------C----------ccchhhhccchHHH
Confidence 3899999999998765 567889999999999999999999985 6 78899999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccC
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIR 158 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~ 158 (488)
++++.+.++ .+.+++.+|+...+.++++||+|+++|+||+++++.+|++++|||.|+|||+.. +|+|+||+|++||++
T Consensus 105 ~~~l~~~~~-~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~yi~~~LtG~~~-~d~t~as~tgl~d~~ 182 (481)
T TIGR01312 105 CEELEAELG-DERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKVMLPKDYLRYRLTGEYV-TEYSDASGTGWFDVA 182 (481)
T ss_pred HHHHHHhcC-HhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhheeeCchHHHhhhhcCCee-eeHHHhhcccccccC
Confidence 999988775 567899999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccc
Q 011357 159 QRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSD 237 (488)
Q Consensus 159 ~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~ 237 (488)
+++|++++|+.+| + +++||+|+++++++|+|++++|+++||++|+||++|+||++|+++|+|+.++|++++++|||+
T Consensus 183 ~~~W~~~~l~~~gi~--~~~Lp~iv~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~ 260 (481)
T TIGR01312 183 KRAWSKELLDALDLP--ESQLPELIESSEKAGTVRPEVAARLGLSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSG 260 (481)
T ss_pred CCCCCHHHHHHhCCC--HHHCCCccCCCCeeeeEcHHHHHHhCCCCCCeEEecchHHHHHhhCCCcccCCcEEEEecCce
Confidence 9999999999999 7 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCcc--ccccCccCCCcEEEeeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCC
Q 011357 238 TVFGITDDPEPRLEG--HVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHE 315 (488)
Q Consensus 238 ~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~ 315 (488)
++..+++++..++.. ..++|. .|+.|+.++++.++|.+++|+++.+...+|++|+++++++++|+++++|+||+.|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~G~ 339 (481)
T TIGR01312 261 VVYAVTDKPLPDPAGAVHGFCHA-LPGGWLPMGVTLSATSSLEWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNGE 339 (481)
T ss_pred EEEEecCCcccCcccceeeeeee-cCCceEEEeEehhhHHHHHHHHHHhCCCcHHHHHHHHhcCCCCCCCeEEecccccC
Confidence 998888877665543 335653 48899999999999999999999885457899999999999999999999999999
Q ss_pred CCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcC
Q 011357 316 ILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASA 389 (488)
Q Consensus 316 r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~ 389 (488)
|.|. .++|.| |++ ..|+++|++||++|||||.+|++++.|++ +.++++|+++||++|
T Consensus 340 r~P~~~~~~~g~~~gl~-----------------~~~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~ 402 (481)
T TIGR01312 340 RTPHLDPQARGSFIGLT-----------------HNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAK 402 (481)
T ss_pred CCCCCCCCcceEEECCC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 9997 356655 544 34699999999999999999999999985 477899999999999
Q ss_pred CHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhhHHHHHH
Q 011357 390 NQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAV 469 (488)
Q Consensus 390 s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~ 469 (488)
|++|+||+|||+|+||++.+..|++++|||++|+++ +|.|++++++.++ +.+..++|+|++++ ++.|++
T Consensus 403 s~~~~Q~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~-----~g~~~~~~~a~~~-~~~~~~~~~P~~~~-----~~~y~~ 471 (481)
T TIGR01312 403 SPAWRQMLADIFGTPVDVPEGEEGPALGAAILAAWA-----LGEKDLAALCSEA-VVKQTESVLPIAEN-----VEAYEE 471 (481)
T ss_pred CHHHHHHHHHHhCCceeecCCCcchHHHHHHHHHHh-----cCCCCCHHHHHhh-ccCCCceECCCHHH-----HHHHHH
Confidence 999999999999999999999999999999999999 9999999998764 67788899999998 999999
Q ss_pred HHHHHHHHHH
Q 011357 470 MMKKRLEIEN 479 (488)
Q Consensus 470 ~y~~y~~~~~ 479 (488)
+|++|+++|+
T Consensus 472 ~~~~~~~~~~ 481 (481)
T TIGR01312 472 LYERYKKLYQ 481 (481)
T ss_pred HHHHHHHHhC
Confidence 9999999873
No 9
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=4.2e-81 Score=670.97 Aligned_cols=440 Identities=15% Similarity=0.153 Sum_probs=380.8
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccc-cCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILS-SLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~-~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ .++++|++||+|+|++++++||++|+|+.. +.+.++|- .|+|+|+|+|+.+
T Consensus 60 ~~w~~~~~~~~~~~~~~~~~~~~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~----------~~~i~W~D~Ra~~ 129 (536)
T TIGR01234 60 DYIEVLEAAIPTVLAELGVDPADVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPH----------AYFKLWKHHAAQE 129 (536)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEecCcceeEEECCCCCEeecccccccCcc----------cceeeeccCCcHH
Confidence 4999999999998765 566789999999999999999999997310 00000011 2399999999999
Q ss_pred HHHHHHHHhC-CHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccc
Q 011357 78 QCREIEKAVG-GALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMD 156 (488)
Q Consensus 78 ~~~~~~~~~~-~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d 156 (488)
+++++++..+ ..+.++++||+++++.++++||+|+++|+||+|+++.+|++++|||.|+|||+.+ +|+|+++.++++|
T Consensus 130 ~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~a~~~~l~~ 208 (536)
T TIGR01234 130 EADRINRLAHAPGEVDLSRYGGIISSEWFWAKILQITEEDPAIYQAADRWIELADWIVAQLSGDIR-RGRCTAGYKALWH 208 (536)
T ss_pred HHHHHHHHhhccchhHHHhhCCccCchhHHHHHHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCcc-ccchhcccceecc
Confidence 9999987652 1367899999999999999999999999999999999999999999999999988 9999999998887
Q ss_pred cCCCCccHHHHHHcCcc----h-HhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEE
Q 011357 157 IRQRVWSKIVLEATAPS----L-EEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAI 231 (488)
Q Consensus 157 ~~~~~W~~~ll~~~g~~----~-~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~ 231 (488)
.+.+.|++++++.+|.. + .++||+|+++++++|+|++++|+++||++|+||++|+||++|+++|+|+.++|++++
T Consensus 209 ~~w~~~~~~~l~~~g~~~~~~lp~~~~p~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~ 288 (536)
T TIGR01234 209 ESWGYPSASFFDELNPILNRHLPDKLFTDIWTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVK 288 (536)
T ss_pred ccccCCCHHHHHHhcchhhhhhhhhcCCceecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEE
Confidence 76666699999999820 1 578899999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccCCCCCCCccccccCc----cCCCcEEEeeeeechhhHHHHHHHHhcC------------ccHHHHHHH
Q 011357 232 SLGTSDTVFGITDDPEPRLEGHVFPNP----VDTKGYMIMLVYKNASLTREDVRNRCAE------------KSWDVFNKY 295 (488)
Q Consensus 232 s~GTs~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~g~~~~w~~~~~~~------------~~~~~l~~~ 295 (488)
++|||+++..+.+++...+. +++. ..+|.|.+++.++++|.+++|+++.+.. ..|+.|++.
T Consensus 289 ~~GTs~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (536)
T TIGR01234 289 IMGTSTCHVLIGDKQRAVPG---MCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEA 365 (536)
T ss_pred EEccceEEEEecCccccCCc---eeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHH
Confidence 99999998777665443221 2221 2367899999999999999999998731 248899999
Q ss_pred HhcCCCCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHH
Q 011357 296 LQQTPPLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAER 371 (488)
Q Consensus 296 a~~~~~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~ 371 (488)
++++|||++|++|+|||.|+|.|. +++|.| |+++ .|+++||+|||+|||||.+|++++.
T Consensus 366 a~~~p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~-----------------~~~~~~~~RAvlEgia~~~~~~l~~ 428 (536)
T TIGR01234 366 AAKQPSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTL-----------------ATDAPLLYRALIEATAFGTRMIMET 428 (536)
T ss_pred HHhCCCCCCCeEecchhccCCCCCCCCcceEEEECCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 466665 5443 4599999999999999999999999
Q ss_pred cCC-CCCCCeEEEecCC-cCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcc-cC
Q 011357 372 FGL-PSPPRRIIATGGA-SANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLE-KT 448 (488)
Q Consensus 372 l~~-g~~~~~i~~~GGg-a~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~-~~ 448 (488)
|++ |.++++|+++||+ |+|++||||+|||+|+||+++...|++++|||++|+++ .|.|++++++.+. ++ ..
T Consensus 429 l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~-----~G~~~~~~~~~~~-~~~~~ 502 (536)
T TIGR01234 429 FTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVA-----AGVYADIPSAQAK-MGSAV 502 (536)
T ss_pred HHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHHHHH-----cCCcCCHHHHHHH-hhccC
Confidence 986 7788999999999 99999999999999999999999999999999999999 9999999988664 44 56
Q ss_pred CceeeccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 011357 449 SLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLV 482 (488)
Q Consensus 449 ~~~~~P~~~~~~~~~~~~Y~~~y~~y~~~~~~l~ 482 (488)
.++|+|++++ ++.|+++|++|+++|+++-
T Consensus 503 ~~~~~P~~~~-----~~~y~~~y~~y~~l~~~~~ 531 (536)
T TIGR01234 503 EKTLTPCSEN-----AQRYEQLYARYQELAMSFG 531 (536)
T ss_pred CceECCChhH-----HHHHHHHHHHHHHHHHHHh
Confidence 7889999988 9999999999999998764
No 10
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=3.9e-81 Score=673.66 Aligned_cols=441 Identities=16% Similarity=0.177 Sum_probs=379.6
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCC-CCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDP-KKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~-~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
+||++++.+++++.++ .++.+|.+||||+|++++++||++|+|+-...+- .+|. .|+|+|+|.|+.+
T Consensus 57 ~~w~~~~~~i~~~~~~~~~~~~~I~aIgis~~~~~~v~~D~~G~pl~~~~~~~~~p~----------~~~i~W~D~Ra~~ 126 (548)
T PRK04123 57 DYIESLEAAIPAVLKEAGVDPAAVVGIGVDFTGSTPAPVDADGTPLALLPEFAENPH----------AMVKLWKDHTAQE 126 (548)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhEEEEEEecccceeEEECCCCCEeecccccccCcc----------cceeEeccCCHHH
Confidence 3999999999997654 5677899999999999999999999973100000 1122 4899999999999
Q ss_pred HHHHHHHHhC-CHHHHHHHh-CCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhC-----Cccccccchhc
Q 011357 78 QCREIEKAVG-GALELSKLT-GSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIG-----AYACIDETDAA 150 (488)
Q Consensus 78 ~~~~~~~~~~-~~~~~~~~t-G~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG-----~~~~~d~s~As 150 (488)
+++++.+..+ ..+++++++ |+++++.++++||+|+++|+||+|+|+.+|++++|||.|+||| +.. +|.|+++
T Consensus 127 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~-~~~~~as 205 (548)
T PRK04123 127 EAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILHVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIV-RSRCAAG 205 (548)
T ss_pred HHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHHHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCccccc-cchhhcc
Confidence 9999987753 125678655 9999999999999999999999999999999999999999999 666 8999999
Q ss_pred cccccccC-CCCccHHHHHHcCcc----h-HhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCC
Q 011357 151 GMNLMDIR-QRVWSKIVLEATAPS----L-EEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLS 224 (488)
Q Consensus 151 ~t~l~d~~-~~~W~~~ll~~~g~~----~-~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~ 224 (488)
.+++||.+ ++.||+++|+.+|+. + .++||+|+++++++|+|++++|+++||++||||++|+||++|+++|+|+
T Consensus 206 ~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~~llP~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~- 284 (548)
T PRK04123 206 HKALWHESWGGLPSADFFDALDPLLARGLRDKLFTETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA- 284 (548)
T ss_pred cccccccccCCCCCHHHHHHhccchhhhhHhhcCCccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCc-
Confidence 99999999 566699999999621 1 5889999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccccccccccCCCCCCCcc-ccccCccCCCcEEEeeeeechhhHHHHHHHHhc------------CccHHH
Q 011357 225 TSGDLAISLGTSDTVFGITDDPEPRLEG-HVFPNPVDTKGYMIMLVYKNASLTREDVRNRCA------------EKSWDV 291 (488)
Q Consensus 225 ~~g~~~~s~GTs~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~------------~~~~~~ 291 (488)
++|++++++||++++..+++++...+.. ..+.....++.|.+++.++++|.+++|+++.+. ...|++
T Consensus 285 ~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~ 364 (548)
T PRK04123 285 EPGTLVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLEL 364 (548)
T ss_pred CCCcEEEEecCceEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHH
Confidence 9999999999999988888776432221 011111347889999999999999999999773 135899
Q ss_pred HHHHHhcCCCCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHH
Q 011357 292 FNKYLQQTPPLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRG 367 (488)
Q Consensus 292 l~~~a~~~~~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~ 367 (488)
|++++++++||++|++|+|||.|+|.|+ ++||.| |++. .|+++||+|||+|||+|.+|+
T Consensus 365 l~~~a~~~~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~-----------------~~~~~~l~RAvlEgia~~~~~ 427 (548)
T PRK04123 365 LTEAAAKQPPGEHGLVALDWFNGRRTPLADQRLKGVITGLTL-----------------GTDAPDIYRALIEATAFGTRA 427 (548)
T ss_pred HHHHHHhcCCCCCceEEcccccCCCCCCCCCCCceEEECCCC-----------------CCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 456655 5543 359999999999999999999
Q ss_pred HHHHcCC-CCCCCeEEEecCC-cCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhc
Q 011357 368 HAERFGL-PSPPRRIIATGGA-SANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKL 445 (488)
Q Consensus 368 ~~~~l~~-g~~~~~i~~~GGg-a~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~ 445 (488)
+++.|++ +.++++|+++||+ |||++|+||+||++|+||+++...|++++|||++|+++ .|.|++++++.+. +
T Consensus 428 ~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~-----~G~~~~~~~~~~~-~ 501 (548)
T PRK04123 428 IMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVA-----AGAYPDIPEAQQA-M 501 (548)
T ss_pred HHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHHHHH-----hccCCCHHHHHHH-h
Confidence 9999986 7778999999999 99999999999999999999999999999999999999 9999999988664 4
Q ss_pred c-cCCceeeccccCCchhhHHHHHHHHHHHHHHHHHH
Q 011357 446 E-KTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRL 481 (488)
Q Consensus 446 ~-~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~~~~~l 481 (488)
+ ...++|+|++++ ++.|+++|++|+++|+.+
T Consensus 502 ~~~~~~~~~P~~~~-----~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 502 ASPVEKTYQPDPEN-----VARYEQLYQEYKQLHDYF 533 (548)
T ss_pred hccCceEEecCHHH-----HHHHHHHHHHHHHHHHHh
Confidence 3 456789999988 999999999999999876
No 11
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=6.3e-81 Score=660.18 Aligned_cols=409 Identities=17% Similarity=0.143 Sum_probs=363.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHH
Q 011357 1 MWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 80 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~ 80 (488)
.||++++++++++.++..+.+|.+||||+|+++++++|++|+| | +|+|+|+|+|+.++++
T Consensus 51 ~~w~~~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~D~~G~p----------l----------~p~i~w~D~Ra~~~~~ 110 (470)
T PRK10331 51 AILQRFADCCRQINSELTECHIRGITVTTFGVDGALVDKQGNL----------L----------YPIISWKCPRTAAVME 110 (470)
T ss_pred HHHHHHHHHHHHHHHhCCccceEEEEEeccccceEEECCCcCC----------c----------cCceeecCCCcHHHHH
Confidence 4899999999998765445679999999999999999999995 7 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCCC
Q 011357 81 EIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQR 160 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~ 160 (488)
++.+..+ .++++++||+++.+.++++||+|+++|+||+|+++++|++++|||.|+|||+.+ +|+|+||+|++||++++
T Consensus 111 ~l~~~~~-~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~ 188 (470)
T PRK10331 111 NIERYIS-AQQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQAHAWLFISSLINHRLTGEFT-TDITMAGTSQMLDIQQR 188 (470)
T ss_pred HHHHhcC-HHHHHhhhCCCccccchHHHHHHHHHhCHHHHHHhhhhcCHHHHHHHhhcCccc-cchhhccceeeeecccC
Confidence 9998764 577999999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred CccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 161 VWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 161 ~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
+|++++++.+| + .++||+|+++++++|+|++++|+++||++||||++|+||++|+++|+|+ .+|++++++|||+++
T Consensus 189 ~W~~ell~~~gi~--~~~lP~i~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~-~~g~~~~~~GT~~~~ 265 (470)
T PRK10331 189 DFSPEILQATGLS--RRLFPRLVEAGEQIGTLQPSAAALLGLPVGIPVISAGHDTQFALFGSGA-GQNQPVLSSGTWEIL 265 (470)
T ss_pred CCCHHHHHHcCCC--HHHCCCcccccccccccCHHHHHHhCCCCCCeEEEccccHHHHHhCCCC-CCCCEEEecchhhhh
Confidence 99999999999 7 7999999999999999999999999999999999999999999999998 689999999999998
Q ss_pred ccccCCCCCCCc----cccccCccCCCcEEEeeeeechhhHHHHHHHHhc--CccHHHHHHHHhcCCCCCCCeEeEeccC
Q 011357 240 FGITDDPEPRLE----GHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCA--EKSWDVFNKYLQQTPPLNGGKMGFYYKE 313 (488)
Q Consensus 240 ~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~--~~~~~~l~~~a~~~~~g~~gl~~lP~l~ 313 (488)
..++++|..+.. .........++.|..+....+++ +++|+++++. ...|++|+++++++|||++|++|+|||.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~ 344 (470)
T PRK10331 266 MVRSAQVDTSLLSQYAGSTCELDSQSGLYNPGMQWLASG-VLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLL 344 (470)
T ss_pred eeecCCCcccccccccccceeccccCceeeechhhHHHH-HHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEeccccc
Confidence 888777665432 11111112366776655445555 8999999874 2468999999999999999999999999
Q ss_pred CCCCCCCCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCC
Q 011357 314 HEILPPLPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASAN 390 (488)
Q Consensus 314 G~r~P~~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s 390 (488)
|++ +|.| |++++ |+++||+||++|||||.+|++++.|++ +.++++|+++||++||
T Consensus 345 g~~-----rg~~~Gl~~~-----------------~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s 402 (470)
T PRK10331 345 ACQ-----NAGWQGVTLN-----------------TTRGHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRN 402 (470)
T ss_pred ccC-----ceeEECCCCC-----------------cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccC
Confidence 887 7766 66543 599999999999999999999999985 3578999999999999
Q ss_pred HHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhhHHHHHH
Q 011357 391 QTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAV 469 (488)
Q Consensus 391 ~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~ 469 (488)
++||||+|||+|+||++++..|++++|||++|+++ +|.|+|++++.+. +.+..++|+|+ .+ ++.|++
T Consensus 403 ~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~-----~G~~~~~~~a~~~-~~~~~~~~~P~-~~-----~~~y~~ 469 (470)
T PRK10331 403 ALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYG-----VGEFSSPEQARAQ-MKYQYRYFYPQ-TE-----PEFIEE 469 (470)
T ss_pred HHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHh-----cCCCCCHHHHHHH-HhhcceeECCC-cc-----Hhhhhc
Confidence 99999999999999999999999999999999999 9999999988764 66667889999 55 788875
No 12
>PLN02295 glycerol kinase
Probab=100.00 E-value=8e-81 Score=665.36 Aligned_cols=423 Identities=19% Similarity=0.214 Sum_probs=368.3
Q ss_pred CHHHHHHHHHHHHhhc--CCCCC----eeEEEEcccccceeee-cCCCccccccCCCCCcccccccccCCCCCCccccCC
Q 011357 1 MWIEALDLMLQKLSKS--LDLSK----VTAVSGSGQQHGSVYW-KKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDS 73 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~----I~aIgis~~~~~~v~~-d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~ 73 (488)
.||++++.+++++.++ .++++ |.+||+|+|++++++| |++|+| | +|+|+|+|.
T Consensus 47 ~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s~q~~~~v~~dd~~G~p----------l----------~~~i~w~D~ 106 (512)
T PLN02295 47 EILESVLTCIAKALEKAAAKGHNVDSGLKAIGITNQRETTVAWSKSTGRP----------L----------YNAIVWMDS 106 (512)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccccceEEEEEecCcceEEEEECCCCCC----------c----------ccceecccc
Confidence 4999999999997654 55666 7999999999999999 579995 7 899999999
Q ss_pred CcHHHHHHHHHHhCC-HHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhc----cccccchhhHHHHHhC-----Cccc
Q 011357 74 STTAQCREIEKAVGG-ALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDT----ERISVVSSFMASLLIG-----AYAC 143 (488)
Q Consensus 74 Ra~~~~~~~~~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~----~~~l~~~dyl~~~LTG-----~~~~ 143 (488)
|+.++++++.+.+++ .+.++++||+++++.++++||+|+++|+||+|+++ .+|++++|||.|+||| +++
T Consensus 107 Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~- 185 (512)
T PLN02295 107 RTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHV- 185 (512)
T ss_pred chHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEE-
Confidence 999999999976532 34567999999999999999999999999999554 5899999999999999 567
Q ss_pred cccchhccccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccC
Q 011357 144 IDETDAAGMNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLT 222 (488)
Q Consensus 144 ~d~s~As~t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g 222 (488)
+|+|+||+|++||+++++||+++++.+| + +++||+++++++++|+|++++++ +||||++|++|++|+++|+|
T Consensus 186 td~s~As~t~l~D~~~~~W~~ell~~~gi~--~~~lP~l~~~~~~~G~v~~~~a~-----~g~pV~~g~~D~~aa~~G~G 258 (512)
T PLN02295 186 TDVTNASRTMLMNLKTLDWDKPTLEALGIP--AEILPKIVSNSEVIGTIAKGWPL-----AGVPIAGCLGDQHAAMLGQR 258 (512)
T ss_pred eeHHHhHHhhccCcccCcCCHHHHHHcCCC--HHHCCCcccCccceecccccccc-----CCCcEEEEechHHHHHhhCc
Confidence 9999999999999999999999999999 7 79999999999999999998865 48999999999999999999
Q ss_pred CCCCCcEEEEeccccccccccCC-CCCCCcc--ccccCcc---CCCcEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHH
Q 011357 223 LSTSGDLAISLGTSDTVFGITDD-PEPRLEG--HVFPNPV---DTKGYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKY 295 (488)
Q Consensus 223 ~~~~g~~~~s~GTs~~~~~~~~~-~~~~~~~--~~~~~~~---~~g~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~ 295 (488)
+ ++|++.+++||++++...++. +..++.. ..+++.. .++.|++++.++++|.+++|+++.+.. .++++++++
T Consensus 259 ~-~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~ 337 (512)
T PLN02295 259 C-RPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEAL 337 (512)
T ss_pred C-CCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9 999999999999987666654 3333322 2233322 278999999999999999999998852 357788888
Q ss_pred HhcCCCCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHH
Q 011357 296 LQQTPPLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAER 371 (488)
Q Consensus 296 a~~~~~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~ 371 (488)
+++++ |++|++|+|||.|+|+|. ++||.| |+++ .|+++||+|||+|||||.+|++++.
T Consensus 338 a~~~~-g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~-----------------~~~~~~l~RAvlEgia~~~r~~l~~ 399 (512)
T PLN02295 338 AATVD-DTGGVYFVPAFSGLFAPRWRDDARGVCVGITR-----------------FTNKAHIARAVLESMCFQVKDVLDA 399 (512)
T ss_pred HHhCC-CCCceEEeCcccCCCCCcCCCCCCEEEECCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87775 888999999999999997 466665 5443 4599999999999999999999999
Q ss_pred cCC--C-----CCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhh
Q 011357 372 FGL--P-----SPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDK 444 (488)
Q Consensus 372 l~~--g-----~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~ 444 (488)
|++ + .++++|+++||+++|++||||+|||+|+||+++...|++++|||++|+++ .|.|++++++.++
T Consensus 400 l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~-----~G~~~~~~~~~~~- 473 (512)
T PLN02295 400 MRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLA-----VGLWTEEEIFASE- 473 (512)
T ss_pred HHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhh-----cCcCCCHHHHHHh-
Confidence 973 2 26789999999999999999999999999999999999999999999999 9999998876533
Q ss_pred cccCCceeeccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 011357 445 LEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLV 482 (488)
Q Consensus 445 ~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~~~~~l~ 482 (488)
+++..++|+|++++ ++ |+++|++|+++|++..
T Consensus 474 ~~~~~~~~~P~~~~-----~~-y~~~y~~~~~~~~~~~ 505 (512)
T PLN02295 474 KWKNTTTFRPKLDE-----EE-RAKRYASWCKAVERSF 505 (512)
T ss_pred ccCCCeEECCCCCH-----HH-HHHHHHHHHHHHHHHh
Confidence 56788899999998 88 9999999999998765
No 13
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=4.6e-80 Score=657.25 Aligned_cols=421 Identities=19% Similarity=0.196 Sum_probs=372.5
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++.+++++.++ +++++|.+||+|+|++++++||++ |+| | +|+|+|+|+|+.+
T Consensus 48 ~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~~~~v~~D~~~G~~----------l----------~p~i~w~D~R~~~ 107 (493)
T TIGR01311 48 EIWESVLSCIAEALAKAGIKPDDIAAIGITNQRETTVVWDKATGKP----------L----------YNAIVWQDRRTAS 107 (493)
T ss_pred HHHHHHHHHHHHHHHHcCCChhheeEEEEecCcceEEEEECCCCcC----------c----------ccceeecccchHH
Confidence 3899999999998654 567889999999999999999976 995 7 8999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhC--Cccccccchhcc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAG 151 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~d~s~As~ 151 (488)
+++++.+.++ .++++++||+++++.++++||+|+|+|+||+|+++++ |++++|||.|+||| +.+ +|+|+||+
T Consensus 108 ~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~As~ 185 (493)
T TIGR01311 108 ICEELKAEGY-GEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGGKVHV-TDVTNASR 185 (493)
T ss_pred HHHHHHHhcc-hHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhhcCCeEEECHhHhhhhhccCCceEE-eccchhhh
Confidence 9999998775 3789999999999999999999999999999998864 78999999999999 887 99999999
Q ss_pred ccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEE
Q 011357 152 MNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLA 230 (488)
Q Consensus 152 t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~ 230 (488)
|+|||+++++|++++++.+| + +++||+|+++++++|+|+++ |+++||||++|++|++|+++|+|+.++|+++
T Consensus 186 t~l~d~~~~~W~~~~l~~~gi~--~~~lP~l~~~g~~~G~v~~~-----~l~~g~pV~~g~~D~~aa~~G~g~~~~g~~~ 258 (493)
T TIGR01311 186 TMLFNIHTLDWDDELLELFGIP--REILPEVRSSSEVYGYTDPG-----LLGAEIPITGVLGDQQAALFGQACFKPGQAK 258 (493)
T ss_pred hhcccccccccCHHHHHHcCCC--HHHCCCccCCccceeccccc-----ccCCCceEEEecccHHHHHhhCcCCCCCceE
Confidence 99999999999999999999 7 79999999999999999987 6779999999999999999999999999999
Q ss_pred EEeccccccccccC-CCCCCCcc--ccccCccCCC---cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCC
Q 011357 231 ISLGTSDTVFGITD-DPEPRLEG--HVFPNPVDTK---GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLN 303 (488)
Q Consensus 231 ~s~GTs~~~~~~~~-~~~~~~~~--~~~~~~~~~g---~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~ 303 (488)
+++||++++.+.+. ++..++.. ..+++.. ++ .|+.++.+.++|.+++|+++.++. ..++++++++++++ |+
T Consensus 259 ~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~ 336 (493)
T TIGR01311 259 NTYGTGCFLLMNTGEKPVISKHGLLTTVAYQL-GGKKPVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVE-DN 336 (493)
T ss_pred EeecccceEeeecCCccccCCCCceEEEEEec-CCCCceEEEEeehhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCC-CC
Confidence 99999988655554 34444322 2344433 33 389999999999999999998853 45778888877764 88
Q ss_pred CCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCC
Q 011357 304 GGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSP 377 (488)
Q Consensus 304 ~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~ 377 (488)
+|++|+|||.|+|+|+ +++|.| |++. .|+++||+|||+|||||.+|++++.|++ |.+
T Consensus 337 ~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~-----------------~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~ 399 (493)
T TIGR01311 337 GGVYFVPAFTGLGAPYWDPDARGAIFGLTR-----------------GTTKAHIARAALEAIAFQTRDVLEAMEKDAGVE 399 (493)
T ss_pred CCEEEeCcccCCCCCcCCCCCcEEEECcCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997 456665 5443 4599999999999999999999999974 677
Q ss_pred CCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeecccc
Q 011357 378 PRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVT 457 (488)
Q Consensus 378 ~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~ 457 (488)
+++|+++||++||++|+||+|||+|+||++++..|++++|||++|+++ +|.|+|++++ ++ +++..++|+|+++
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~-----~G~~~~~~~a-~~-~~~~~~~~~P~~~ 472 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLA-----VGYWKSLEEI-EA-LWRVEKTFEPEMD 472 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhh-----cCcCCCHHHH-HH-hcCCCcEECCCCC
Confidence 899999999999999999999999999999999999999999999999 9999999987 43 5688899999998
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHH
Q 011357 458 AGDQQLVSKYAVMMKKRLEIENRLV 482 (488)
Q Consensus 458 ~~~~~~~~~Y~~~y~~y~~~~~~l~ 482 (488)
+ ++ |+++|++|+++|+++.
T Consensus 473 ~-----~~-y~~~~~~~~~~~~~~~ 491 (493)
T TIGR01311 473 E-----EE-REARYAGWKEAVKRSL 491 (493)
T ss_pred H-----HH-HHHHHHHHHHHHHHHh
Confidence 8 77 9999999999999763
No 14
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-78 Score=644.08 Aligned_cols=436 Identities=22% Similarity=0.310 Sum_probs=383.8
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.||++++.+++++.++ +++.+|.||+||+|||+++++|++|+| | +|+|+|+|.|+.++
T Consensus 52 ~~w~~~~~ai~~l~~~~~~~~~~I~aI~is~~~~g~vllD~~g~~----------L----------~~~i~w~D~R~~~~ 111 (502)
T COG1070 52 ELWQAILEALRQLLEESKIDPDAIAAIGISGQGHGLVLLDANGEP----------L----------RPAILWNDTRAAEE 111 (502)
T ss_pred HHHHHHHHHHHHHHHhcccChhhceEEEEeccccceEEECCCCCC----------c----------cccceecchhhHHH
Confidence 4999999999998665 788999999999999999999999996 7 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccC
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIR 158 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~ 158 (488)
++++.+.++. ++.+..||+++.+.++++||+|+++|+||+|+|+.+|++++|||.|+|||+++ +|+|+||+|++||++
T Consensus 112 ~~~l~~~~~~-~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~k~~~il~~~dyl~~rLTG~~~-~e~s~as~t~l~d~~ 189 (502)
T COG1070 112 VEELEERLGG-EALYARTGLQAMPGFTAPKLLWLKENEPDLFAKAAKILLIKDYLRYRLTGEFA-TEISDASGTGLLDIR 189 (502)
T ss_pred HHHHHhhccc-hhhhhhcCCCcCccccHHHHHHHHhcCcHHHHhhhheechHHHHHHHHhCCcc-ccccccccccccccc
Confidence 9999998764 67888899999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccc
Q 011357 159 QRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSD 237 (488)
Q Consensus 159 ~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~ 237 (488)
++.|+.++|+.+| ++ .++||+++++++++|+|++++|+++||+++|||++|+||++++++|+|+.++|++..++||+.
T Consensus 190 ~~~w~~~~l~~~gl~~-~~~lp~vv~~g~~~G~l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~ 268 (502)
T COG1070 190 TRKWDWELLAALGLPE-RDLLPPVVEPGEVLGTLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSG 268 (502)
T ss_pred ccccCHHHHHHcCCCh-HHhCCCccCccceeccccHHHHHHhCCCCCCeEEECCchHHHHhccCCCcCCCcEEEEecccc
Confidence 9999999999999 73 389999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccCc-cCCCcEEEeeeeechhhHHHHHHHHhcCc-cHHHHHHHHh--cCCCCCCCeEeEeccC
Q 011357 238 TVFGITDDPEPRLEGHVFPNP-VDTKGYMIMLVYKNASLTREDVRNRCAEK-SWDVFNKYLQ--QTPPLNGGKMGFYYKE 313 (488)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~g~~~~w~~~~~~~~-~~~~l~~~a~--~~~~g~~gl~~lP~l~ 313 (488)
++...+++|..++....+++. ..++.|+.++..+++|.+++|+++.+... .+.++...+. ..++++.+++|+||++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~ 348 (502)
T COG1070 269 VVRAATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLS 348 (502)
T ss_pred EEeeeccccccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEecccc
Confidence 998888887665554433332 24788888899999999999999998642 4444444333 4447889999999999
Q ss_pred CCCCCC---CCCcceeeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCc
Q 011357 314 HEILPP---LPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS 388 (488)
Q Consensus 314 G~r~P~---~a~G~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga 388 (488)
|||.|. .+||.| .|+. ..|+++|++||++||++|.++++++.|++ +.++++|+++||+|
T Consensus 349 ~er~p~~~~~~r~~~------------~g~~----~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGga 412 (502)
T COG1070 349 GERGPHADPAARGGF------------VGLT----LPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGA 412 (502)
T ss_pred CCcCCCCCccceeEE------------Eccc----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcc
Confidence 999997 344555 2333 34699999999999999999999999986 77888999999999
Q ss_pred CCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCC-CCCCHHHHHHhhcccCCceeeccccCCchhhHHHH
Q 011357 389 ANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKG-SFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKY 467 (488)
Q Consensus 389 ~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G-~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y 467 (488)
||++|+||+||++|+||.++...|++++|+|++++.+ .+ .+++.+++.+. + .....+.|++++ ++.|
T Consensus 413 rs~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~-----~~~~~~~~~~~~~~-~-~~~~~~~p~~~~-----~~~y 480 (502)
T COG1070 413 RSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA-----LGGIYDSAEGALKA-V-VDARRIIPDPER-----AAAY 480 (502)
T ss_pred cCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHH-----hCCCCccHHHHhhc-c-ccccccCCChHH-----HHHH
Confidence 9999999999999999999888999999999999988 54 45555665542 3 337889999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 011357 468 AVMMKKRLEIENRLVEKLGR 487 (488)
Q Consensus 468 ~~~y~~y~~~~~~l~~~~~~ 487 (488)
+++|++|+++|+++.+.+++
T Consensus 481 ~~~~~~~~~~y~~~~~~~~~ 500 (502)
T COG1070 481 QELYERYRALYQALLALYRQ 500 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988764
No 15
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=1.2e-77 Score=633.99 Aligned_cols=401 Identities=16% Similarity=0.141 Sum_probs=355.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHH
Q 011357 1 MWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 80 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~ 80 (488)
.||++++++++++.+++.+++|++|++|+|+++++++|++|+| | +|+|+|+|+|+.++++
T Consensus 50 ~~w~~~~~~~~~l~~~~~~~~I~aI~~s~~~~~~v~~D~~G~~----------l----------~p~i~w~D~R~~~~~~ 109 (465)
T TIGR02628 50 AIWQKLADCCQQINSELTEKHIRGIAVTTFGVDGAPFDKQGNQ----------L----------YPIISWKCPRTAPVMD 109 (465)
T ss_pred HHHHHHHHHHHHHHhhcChhceEEEEEeccccceEEECCCCCC----------c----------cccccccCcccHHHHH
Confidence 3999999999998754556779999999999999999999995 7 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCCC
Q 011357 81 EIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQR 160 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~ 160 (488)
++.+..+ .++++++||+++.+.++++||+|+|+|+||+|+++++|++++|||.|+|||+.+ +|+|+||+|++||++++
T Consensus 110 ~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~ 187 (465)
T TIGR02628 110 NIERLLD-AQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERMHKFVFISSMITHRLTGEFT-TDITMAGTSMMTDLTQR 187 (465)
T ss_pred HHHHhhC-HHHHHHHhCCCccccchHHHHHHHHHhChHHHHHHHHhhCcHHHHHHHHhCCcc-cchhhhhcceeeecCcC
Confidence 9998765 578999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred CccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 161 VWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 161 ~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
+||+++|+.+| + +++||+++++++++|+|++++|+++||++||||++|+||++|+++|+|+ .+|++++++|||+++
T Consensus 188 ~w~~ell~~~gi~--~~~lP~l~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~-~~g~~~~~~GTs~~~ 264 (465)
T TIGR02628 188 NWSPQILQALGLS--RRLFPPLVEAGEQIGTLQNSAAAMLGLPVGVPVISAGHDTQFALFGSGA-EQNQPVLSSGTWEIL 264 (465)
T ss_pred CCCHHHHHHcCCC--HHHCCCcccCCccceeeCHHHHHHhCCCCCCCEEecCccHHHHHhccCC-CCCcEEEeccchhhh
Confidence 99999999999 7 7999999999999999999999999999999999999999999999998 789999999999998
Q ss_pred ccccCCCCCCCcccc--ccCc--cCCCcEEEeeeeechhhHHHHHHHHhcC------ccHHHHHHHHhcCCCCCCCeE-e
Q 011357 240 FGITDDPEPRLEGHV--FPNP--VDTKGYMIMLVYKNASLTREDVRNRCAE------KSWDVFNKYLQQTPPLNGGKM-G 308 (488)
Q Consensus 240 ~~~~~~~~~~~~~~~--~~~~--~~~g~~~~~~~~~~~g~~~~w~~~~~~~------~~~~~l~~~a~~~~~g~~gl~-~ 308 (488)
...+++|..+..... +++. ..+|.|.......++| +++|+++.+.. ..|++|++.+++++||++|++ |
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~ 343 (465)
T TIGR02628 265 MARSQQVDTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNF 343 (465)
T ss_pred eeccCcCCCCccccccccccccccCCceeeehhhhhhhh-HHHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceee
Confidence 888887776654321 2221 2266776655455555 79999997642 126999999999999999999 9
Q ss_pred EeccCCCCCCCCCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEec
Q 011357 309 FYYKEHEILPPLPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATG 385 (488)
Q Consensus 309 lP~l~G~r~P~~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~G 385 (488)
+|++. | .++|.| |++.+ |+++||+||++|||||.+|++++.|++ +.++++|+++|
T Consensus 344 ~p~~~----~-~a~g~~~Gl~~~-----------------~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~G 401 (465)
T TIGR02628 344 QCDLL----S-CGQGGIQGLTLN-----------------TTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVG 401 (465)
T ss_pred cccCC----c-ccceeEECCCCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEec
Confidence 99875 4 467866 66543 599999999999999999999999986 35789999999
Q ss_pred CCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeecc
Q 011357 386 GASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLA 455 (488)
Q Consensus 386 Gga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~ 455 (488)
|+++|++||||+|||+|+||++++..|++++|||++|+++ +|.|+|++++.+. +.+..++|+|+
T Consensus 402 Gga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a-----~G~~~~~~~a~~~-~~~~~~~~~P~ 465 (465)
T TIGR02628 402 GGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYG-----VGEYNSPEEAQAQ-MHPQYRYFYPQ 465 (465)
T ss_pred CccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHh-----cCccCCHHHHHHH-hhccceeeCCC
Confidence 9999999999999999999999999999999999999999 9999999998764 56667789995
No 16
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=3.7e-75 Score=614.64 Aligned_cols=412 Identities=14% Similarity=0.084 Sum_probs=353.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHHH
Q 011357 2 WIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCRE 81 (488)
Q Consensus 2 ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~~ 81 (488)
||+++.++++++.. .+++|.+||||+|++++++||++|+| | +|+|+|+|.|+.+++++
T Consensus 38 ~~~~i~~~l~~~~~--~~~~I~~Igis~q~~~~v~lD~~G~p----------L----------~pai~w~D~Ra~~~~~~ 95 (471)
T PRK10640 38 LESAIRLGLNKVCE--EGIRIDSIGIDTWGVDYVLLDKQGQR----------V----------GLPVSYRDSRTDGVMAQ 95 (471)
T ss_pred HHHHHHHHHHHHhh--cCCCccEEEEcCCcccEEEECCCCCC----------c----------CCceeccCCCCHHHHHH
Confidence 56666666665543 35679999999999999999999995 7 89999999999999999
Q ss_pred HHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCCCC
Q 011357 82 IEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRV 161 (488)
Q Consensus 82 ~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~ 161 (488)
+.+.++ .+++|++||+++.+.++++||+|+++|+|++|+++++|++++|||.|+|||+.+ +|+|+||+|+|||+++++
T Consensus 96 l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~as~t~l~d~~~~~ 173 (471)
T PRK10640 96 AQQQLG-KRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYRLTGKMN-WEYTNATTTQLVNINSDD 173 (471)
T ss_pred HHHhcC-HHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHHHhCCcc-eeecHhhhccccCCCcCC
Confidence 998875 578999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred ccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEe-ccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 162 WSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 162 W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~-g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
||+++++.+| + .++||+|+++++++|++++++ | +||||++ |+||++|+++|+|+.++|++++|+|||+++
T Consensus 174 W~~ell~~~Gi~--~~~LP~lv~~~~~~G~v~~~~----g--~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GT~~~~ 245 (471)
T PRK10640 174 WDESLLAWSGAP--KAWFGRPTHPGNVIGHWICPQ----G--NEIPVVAVASHDTASAVIASPLNDSDAAYLSSGTWSLM 245 (471)
T ss_pred cCHHHHHHcCCC--HHHcCCCcCCCccceeeeccc----C--CCCCEEEeCCCcHHHHhhccCCCCCCeEEEEeccHhhh
Confidence 9999999999 7 799999999999999987764 5 6899998 799999999999999999999999999999
Q ss_pred ccccCCCCCCCccc--cccC-ccCCCcEEEeeeeechhhHHHHHHHHhc----CccHHHHHHHHhcCCCCCCCeEeEecc
Q 011357 240 FGITDDPEPRLEGH--VFPN-PVDTKGYMIMLVYKNASLTREDVRNRCA----EKSWDVFNKYLQQTPPLNGGKMGFYYK 312 (488)
Q Consensus 240 ~~~~~~~~~~~~~~--~~~~-~~~~g~~~~~~~~~~~g~~~~w~~~~~~----~~~~~~l~~~a~~~~~g~~gl~~lP~l 312 (488)
..++++|..+.... .+.+ ...+|.|.+...+. | .|+++++. ...|+++.+++++++ |++|++ +|
T Consensus 246 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~-g~~gli-~p-- 316 (471)
T PRK10640 246 GFESQTPFTNDTALAANITNEGGAEGRYRVLKNIM--G---LWLLQRVLQERQITDLPALIAATAALP-ACRFLI-NP-- 316 (471)
T ss_pred heecCCCcCCHHHHHhccCccCCCCceEEEecchh--H---HHHHHHHHHHhccCCHHHHHHHHHhCC-CCCcee-CC--
Confidence 88888887664431 1211 12367787665433 3 89998763 246888888887775 889986 58
Q ss_pred CCCCCCC--CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCC
Q 011357 313 EHEILPP--LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGA 387 (488)
Q Consensus 313 ~G~r~P~--~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGg 387 (488)
.|+|.+. +++|.| |++.+| |+. ..|+++||+|||+||+||.+|++++.|++ +.++++|+++||+
T Consensus 317 ~ger~~~~~~arg~~~gl~~~~-------G~~----~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGg 385 (471)
T PRK10640 317 NDDRFINPPSMCSEIQAACRET-------AQP----VPESDAELARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGG 385 (471)
T ss_pred CcccccCchhhHHHHHHHHHHh-------CCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECCh
Confidence 6888653 578877 776654 332 34699999999999999999999999985 6678999999999
Q ss_pred cCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhccc---CCceeeccccCCchhhH
Q 011357 388 SANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEK---TSLSCKLAVTAGDQQLV 464 (488)
Q Consensus 388 a~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~---~~~~~~P~~~~~~~~~~ 464 (488)
++|++|+||+|||+|+||.+.. .|++++|||++|+++ +|.|++++++.+ +++ ..++|+|++ .
T Consensus 386 a~s~~w~Qi~ADvlg~pV~~~~-~ea~alGaa~~a~~a-----~G~~~~~~~~~~--~~~~~~~~~~~~P~~-------~ 450 (471)
T PRK10640 386 CQNALLNQLCADACGIRVIAGP-VEASTLGNIGIQLMT-----LDELNNVDDFRQ--VVSTNFPLTTFTPNP-------D 450 (471)
T ss_pred hhhHHHHHHHHHHhCCCeeeCC-hhHHHHHHHHHHHHH-----cCCcCCHHHHHH--HHHhcCCceEEcCCC-------h
Confidence 9999999999999999998866 489999999999999 999999998854 445 568999998 5
Q ss_pred HHHHHHHHHHHHHHHH
Q 011357 465 SKYAVMMKKRLEIENR 480 (488)
Q Consensus 465 ~~Y~~~y~~y~~~~~~ 480 (488)
+.|++.|..|+++++.
T Consensus 451 ~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 451 SEIARHVAQFQSLRQT 466 (471)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 7899999999999874
No 17
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=6e-73 Score=566.47 Aligned_cols=421 Identities=17% Similarity=0.190 Sum_probs=370.1
Q ss_pred HHHHHHHHHHHHhh-c-CCCCCeeEEEEcccccceeeecC-CCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 2 WIEALDLMLQKLSK-S-LDLSKVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 2 ww~a~~~~~~~l~~-~-~~~~~I~aIgis~~~~~~v~~d~-~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.|+++..+++.+.. . +.+.+|++||||+|+++.|+||+ .|+| + +|+|.|+|+|+.+.
T Consensus 53 Iw~~~~~~l~~a~~~~~i~~~~iaaIGITNQRETtvvWdk~tG~P----------i----------~naIvWQdrRTa~~ 112 (499)
T COG0554 53 IWASVRSVLKEALAKAGIKPGEIAAIGITNQRETTVVWDKETGKP----------I----------YNAIVWQDRRTADI 112 (499)
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEEeeccceeEEEEeCCCCCC----------c----------ccceeeeccchHHH
Confidence 68999999988644 4 88999999999999999999998 5996 7 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhcc----ccccchhhHHHHHhC--Cccccccchhccc
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTE----RISVVSSFMASLLIG--AYACIDETDAAGM 152 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~----~~l~~~dyl~~~LTG--~~~~~d~s~As~t 152 (488)
++++++. +..+.+.++||..+.|+|+..||.|+.+|-|...+|+. .|.++..||.|+||| .++ ||+||||+|
T Consensus 113 c~~L~~~-g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtWLiw~LTgg~~h~-TD~sNASRT 190 (499)
T COG0554 113 CEELKAD-GYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWKLTGGKVHV-TDYSNASRT 190 (499)
T ss_pred HHHHHhc-chhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhhcCCeEEecchhhheeeccCCceec-cccchhHHH
Confidence 9999987 44577889999999999999999999999998888875 489999999999999 566 999999999
Q ss_pred cccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEE
Q 011357 153 NLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAI 231 (488)
Q Consensus 153 ~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~ 231 (488)
+|||+++.+||+++|+.|| | +++||++.++.++.|.+.. -.+...+||..-.||||||++|.||++||++..
T Consensus 191 ~L~ni~~l~WD~elL~il~Ip--~~~LPev~~ss~~~G~t~~-----~~~g~~vPI~g~~GDQQAALfGq~c~~pG~~K~ 263 (499)
T COG0554 191 MLFNIHSLEWDDELLELLGIP--RSMLPEVRPSSEIYGVTGI-----GFLGAEVPITGVAGDQQAALFGQGCFEPGMAKN 263 (499)
T ss_pred hcccccccCCCHHHHHHhCCC--hHhCccccccccccccccc-----cccCCceeeccccchhHHHHhhcccCCcCcccc
Confidence 9999999999999999999 8 8999999999999999876 234567999999999999999999999999999
Q ss_pred EeccccccccccCC-CCCCCcc--ccccCccC-CCcEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCCCe
Q 011357 232 SLGTSDTVFGITDD-PEPRLEG--HVFPNPVD-TKGYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGK 306 (488)
Q Consensus 232 s~GTs~~~~~~~~~-~~~~~~~--~~~~~~~~-~g~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~gl 306 (488)
+.||++++.+.+.+ ++.++.+ -+.++.+. .-.|.++|.+..+|.+++|+++.+.. ++..+.+.+|.++++ ++|+
T Consensus 264 TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~gk~~YALEGsif~aGaavqWLrd~L~~i~~a~~~e~~A~~~~~-~~gV 342 (499)
T COG0554 264 TYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDGKVTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVED-NGGV 342 (499)
T ss_pred ccccceeeeeccCCccccCCCCceeEEEeccCCeEEEEEecceeehhhHHHHHHHhcCccCchhHHHHHHhccCC-CCce
Confidence 99999999999974 5555543 23455432 23699999999999999999998753 456777778877664 6899
Q ss_pred EeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCe
Q 011357 307 MGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRR 380 (488)
Q Consensus 307 ~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~ 380 (488)
+|+|.|.|..+|+ ++||.+ |++- .++++|++||++|+|||..|++++.|++ +..+++
T Consensus 343 y~VPAFtGLgAPyWd~~aRGai~Gltr-----------------gt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~ 405 (499)
T COG0554 343 YFVPAFTGLGAPYWDSDARGAIFGLTR-----------------GTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTR 405 (499)
T ss_pred EEEcccccCCCCCcCcccceeEEeeCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 9999999999998 566754 5543 4599999999999999999999999986 667999
Q ss_pred EEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCc
Q 011357 381 IIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGD 460 (488)
Q Consensus 381 i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~ 460 (488)
+++.||.++|+++||++||++|+||+++...|+||+|||++|+.+ +|.|+|.+|..+. ....+.|+|..+.
T Consensus 406 LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla-----~G~w~~~~el~~~--~~~~~~f~p~m~~-- 476 (499)
T COG0554 406 LRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLA-----VGFWKDLDELAEL--WPLDKEFEPGMDE-- 476 (499)
T ss_pred EEEcCccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhh-----hCcCCCHHHHHhh--hcccceeCCCCCH--
Confidence 999999999999999999999999999999999999999999999 9999999998752 4678899999874
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 011357 461 QQLVSKYAVMMKKRLEIENRLV 482 (488)
Q Consensus 461 ~~~~~~Y~~~y~~y~~~~~~l~ 482 (488)
+.-+++|..|++..++..
T Consensus 477 ----~~r~~~y~~W~~AV~rs~ 494 (499)
T COG0554 477 ----EEREELYAGWKKAVKRSL 494 (499)
T ss_pred ----HHHHHHHHHHHHHHHHHh
Confidence 677889999999887654
No 18
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=9.6e-69 Score=543.48 Aligned_cols=441 Identities=16% Similarity=0.204 Sum_probs=380.3
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCC-CCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTK-ESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~-~~i~W~D~Ra~~ 77 (488)
+||+++|.+++.+.++ +++.+|++|||++. +++|++|++|+|+ . +.|.|... ++|+|+|+|+.+
T Consensus 51 d~~~av~~aVr~~v~~agv~~~~V~gIGvDaT-cSlvv~d~~g~pl--------~----v~~~~~~~~~vilWmDHrA~~ 117 (544)
T COG1069 51 DYWEAVCAAVRDVVAKAGVDPADVVGIGVDAT-CSLVVIDRDGNPL--------A----VLPEFPNNPNVILWMDHRAVE 117 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHeeEEEEcce-eeeEEECCCCCee--------c----cCCCCCCCCceEEeccchHHH
Confidence 5899999999997554 89999999999999 9999999999984 1 23434333 499999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhcccccccc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDI 157 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~ 157 (488)
++++++... ++++...|..+++.+..|||+|+++|.|++|+|+.+|+.+.|||.|+|||....+ .+++..-..|..
T Consensus 118 EAe~in~~~---~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~~~fdl~D~l~~~ltG~~~Rs-~Ct~~~Kw~~~~ 193 (544)
T COG1069 118 EAEEINATC---HPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAAHIFDLADWLTWKLTGSIARS-RCTAGCKWNWLE 193 (544)
T ss_pred HHHHHHhhc---hHHHHhhCCccChhhhHHHHHHHHhhChHHHHHhhhhhhHHHHHHHHhhcchhhc-cccceeeeeeec
Confidence 999999863 5589999999999999999999999999999999999999999999999976522 333333345666
Q ss_pred -CCCCccHHHHHHcC-cchH---hhcC-CcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEE
Q 011357 158 -RQRVWSKIVLEATA-PSLE---EKLG-KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAI 231 (488)
Q Consensus 158 -~~~~W~~~ll~~~g-~~~~---~~LP-~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~ 231 (488)
+++-|++++++.+| +++. +.|| ++++.|+.+|.+++++|+++||++||-|..|..|..++++|++...++.+..
T Consensus 194 ~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~ 273 (544)
T COG1069 194 HEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAM 273 (544)
T ss_pred cccCCCCHHHHHhcCchhhhcccccCCcccccCCccccccCHHHHHHhCCCCCcEEeccceeccccccccccCCCCeEEE
Confidence 56669999999999 5443 3477 8889999999999999999999999999999999999999999888999999
Q ss_pred EeccccccccccCCCCCCCcccc-ccCccCCCcEEEeeeeechhhHHHHHHHHhc-------------C-------ccHH
Q 011357 232 SLGTSDTVFGITDDPEPRLEGHV-FPNPVDTKGYMIMLVYKNASLTREDVRNRCA-------------E-------KSWD 290 (488)
Q Consensus 232 s~GTs~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~-------------~-------~~~~ 290 (488)
++|||+|.+..++++.+-+..+. |...+.||.|+++++++..|.+++||.+... . ...+
T Consensus 274 I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~ 353 (544)
T COG1069 274 IAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLE 353 (544)
T ss_pred EeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHH
Confidence 99999999999988765554432 2223569999999999999999999988741 1 1234
Q ss_pred HHHHHHhcCCCCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChH---HHHHHHHHHHHH
Q 011357 291 VFNKYLQQTPPLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPP---SEVRALVEGQFL 363 (488)
Q Consensus 291 ~l~~~a~~~~~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~---~~~rAvlEgia~ 363 (488)
.|.+.+.+.+|+.++++++|+|+|+|+|. +++|+| |++++| +++ .+|||.+|+++|
T Consensus 354 ~l~~~~~~~~~l~~~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T-----------------~~~~l~~lY~a~l~a~A~ 416 (544)
T COG1069 354 LLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDT-----------------SPESLALLYRALLEATAF 416 (544)
T ss_pred HHHhhHhccCcccCCcEecccccCCcCCCCCccceeEEeccccCC-----------------CcHHHHHHHHHHHHHHHH
Confidence 56666778889999999999999999997 689988 888876 555 999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHH
Q 011357 364 SMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYK 442 (488)
Q Consensus 364 ~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~ 442 (488)
..|+++|.|++ |.++++|+++||..||++|||++||++|+||+++..+++.++|+||+++++ .|.|+|+..|.+
T Consensus 417 GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~~s~~a~llGsAm~~avA-----ag~~~dl~~A~~ 491 (544)
T COG1069 417 GTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVTGRPVVIPASDQAVLLGAAMFAAVA-----AGVHPDLPAAAQ 491 (544)
T ss_pred hHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhcCCeEEeecccchhhhHHHHHHHHH-----hccCcchHHHHH
Confidence 99999999997 999999999999999999999999999999999999999999999999999 999999998887
Q ss_pred hhcccCCceeeccc-cCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 011357 443 DKLEKTSLSCKLAV-TAGDQQLVSKYAVMMKKRLEIENRLVEKLG 486 (488)
Q Consensus 443 ~~~~~~~~~~~P~~-~~~~~~~~~~Y~~~y~~y~~~~~~l~~~~~ 486 (488)
+ |.+..+...|++ +. +..|+.+|++|++++....+...
T Consensus 492 a-Ms~~~~~~~~~~~~~-----~~~y~~lyr~y~~l~~~~~~~~~ 530 (544)
T COG1069 492 A-MSSAVEKTLPPPPER-----AARYERLYRRYLQLHDDAEKHYA 530 (544)
T ss_pred H-hhcccceecCChHHH-----HHHHHHHHHHHHHHHHHHhhhhh
Confidence 5 666666666666 66 99999999999999988776554
No 19
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=4.7e-69 Score=567.21 Aligned_cols=385 Identities=14% Similarity=0.085 Sum_probs=323.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHHH
Q 011357 2 WIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCRE 81 (488)
Q Consensus 2 ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~~ 81 (488)
||+++.++++++.+. ..+|++||||+|++++|+||++|+| | +|+|+|+|+|+.+++++
T Consensus 50 ~~~~~~~~l~~~~~~--~~~i~~Igis~q~~~~v~~D~~G~~----------l----------~p~i~w~D~R~~~~~~~ 107 (454)
T TIGR02627 50 LEQEIRLGLNKVDAE--GIAPDSIGIDTWGVDFVLLDQNGQR----------V----------GDPVSYRDSRTDGVMAQ 107 (454)
T ss_pred HHHHHHHHHHHHhcc--CCCceEEEEeccceeEEEEcCCCCC----------c----------cCceecCCCCCHHHHHH
Confidence 899999999988653 3569999999999999999999995 7 89999999999999999
Q ss_pred HHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCCCC
Q 011357 82 IEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRV 161 (488)
Q Consensus 82 ~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~ 161 (488)
+.+..+ .+++|++||+++.+.++++||+|+++|+||+|+|+++|++++|||.|+|||+.+ +|+|+||+|+|||+++++
T Consensus 108 l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~ 185 (454)
T TIGR02627 108 VQSELG-KEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVAHFLLIPDYLNYRLTGKKV-WEYTNATTTQLVNINTDD 185 (454)
T ss_pred HHhhcC-HHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHHHhCCHHHHHHHheeCCce-eeeehhhhcccccCCCCC
Confidence 998764 578999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred ccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEe-ccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 162 WSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 162 W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~-g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
|++++++.+| + +++||+|+++++++|.+++ +|+ +|+||++ |+||++|+++|+|+.++|++++++|||+++
T Consensus 186 W~~~ll~~~gi~--~~~lP~l~~~~~~~G~~~~-----~gl-~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~ 257 (454)
T TIGR02627 186 WDEDLLAYLGVP--AAWFGRPTHPGNVIGLWEC-----PQG-NQIPVVAVATHDTASAVVAAPLQGENAAYLSSGTWSLM 257 (454)
T ss_pred cCHHHHHHcCCC--HHHcCCccCCCCeeEEeec-----ccC-CCCCEEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHh
Confidence 9999999999 7 7999999999999999864 367 7899998 999999999999999999999999999998
Q ss_pred ccccCCCCCCCccc--cccC-ccCCCcEEEeeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCC
Q 011357 240 FGITDDPEPRLEGH--VFPN-PVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEI 316 (488)
Q Consensus 240 ~~~~~~~~~~~~~~--~~~~-~~~~g~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r 316 (488)
...+++|..++..+ .+.+ ...++.|......+ ++..++|+.+......|+++.+.+..+|+++ |++.|++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~W~~~~~~~~~~~~~~~~l~~~a~~~p~~~------g~~~~~~ 330 (454)
T TIGR02627 258 GFESQTPITNEQALAANITNEGGADGRYRVLKNIM-GLWLLQRVCRERDINDLPALIEQAQALPAFK------SIINPND 330 (454)
T ss_pred cccCCCCCCCHHHHHhccccccccccEEEeecchh-hhHHHHHHHhhhccccHHHHHHHhcCCCCCC------eeeCCCc
Confidence 88877777665432 1211 12367776665554 3323444433322346888888887777643 5557777
Q ss_pred CCC----CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcC
Q 011357 317 LPP----LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASA 389 (488)
Q Consensus 317 ~P~----~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~ 389 (488)
.|+ ++++.+ + ++.|.|++ ..|+++||+|||+|||||.+|++++.|++ +.++++|+++||+++
T Consensus 331 ~~~~~~~~~~~~~~~-------~~~~~Gl~----~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~ 399 (454)
T TIGR02627 331 DRFINPENMCEEIQA-------YCRETNQP----IPESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQ 399 (454)
T ss_pred ccccChhhhHHHHHH-------HHHHcCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhh
Confidence 665 223322 1 11234555 45699999999999999999999999985 667899999999999
Q ss_pred CHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHH
Q 011357 390 NQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYK 442 (488)
Q Consensus 390 s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~ 442 (488)
|++|+||+||++|+||.+.. .|++++|||++|+++ +|.|++++++.+
T Consensus 400 s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~-----~G~~~~~~~~~~ 446 (454)
T TIGR02627 400 NAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMA-----LDEINDMAAFRQ 446 (454)
T ss_pred hHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHh-----cCCcCCHHHHHH
Confidence 99999999999999998765 789999999999999 999999998864
No 20
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-60 Score=467.49 Aligned_cols=471 Identities=56% Similarity=0.903 Sum_probs=416.6
Q ss_pred CHHHHHHHHHHHHhhc-CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHH
Q 011357 1 MWIEALDLMLQKLSKS-LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQC 79 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~-~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~ 79 (488)
||.+|++-.++++.++ .+..+|.||+-++|+|+-|+|.+.++-.+++||+++.|.+||..+|+.....+|+|+.+..|+
T Consensus 68 MWveAlDlll~kl~~~~~d~~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC 147 (545)
T KOG2531|consen 68 MWVEALDLLLDKLREAGFDLSKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQC 147 (545)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHH
Confidence 7999999999999888 888999999999999999999999888889999998899999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCC
Q 011357 80 REIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQ 159 (488)
Q Consensus 80 ~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~ 159 (488)
+|+...+|++.++.++||+..+..|+.+||+-+.+.+||.|+++.++-.+++|+...|-|..+.+|+|++|++.|||+++
T Consensus 148 ~ElE~~VGG~~~la~LTGSRAy~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgsGMNL~dIr~ 227 (545)
T KOG2531|consen 148 QELEEAVGGAQELAKLTGSRAYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGSGMNLLDIRK 227 (545)
T ss_pred HHHHHHhccHHHHHHhhcchhhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceecccccCchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CCccHHHHHHcCcchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 160 RVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 160 ~~W~~~ll~~~g~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
+.|++++|+...++++++|..++++..+.|+|++.+.+++|+++++.|++-.||++++..|... +++++.+|+|||..+
T Consensus 228 k~ws~~~L~~~apdL~~KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l-~~~dl~iSLGTSdTv 306 (545)
T KOG2531|consen 228 KKWSKALLDACAPDLEEKLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPL-RPGDLLISLGTSDTV 306 (545)
T ss_pred hhhhHHHHhhhChhHHHHhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccc-cCCceEEEecCcceE
Confidence 9999999999998889999999999999999999999999999999999999999999999877 679999999999999
Q ss_pred ccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCC
Q 011357 240 FGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPP 319 (488)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~ 319 (488)
.+.++++.+.+.++.|||++.+..|+.+.|..||+...+-+|+.....+|+.+++...+.|+|.+|.+-+-|-.+|-.|.
T Consensus 307 ~m~t~~~~p~~egHvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~~~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~ 386 (545)
T KOG2531|consen 307 FMVTKEYHPSPEGHVFCHPTDPNHYMGMLCFKNGSLTRERIRNESANGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPS 386 (545)
T ss_pred EEEcCCCCCCCCcceeccCCCccceEEEEEecCChHHHHHHhhcccCCCHHHHHHHhccCcCCCCCceeEecccccccCC
Confidence 99999999999999999998899999999999999999999998777899999999999999999887555556788886
Q ss_pred CCCcceeeeeccccccccc-CcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHH
Q 011357 320 LPVGFHRYILENFEGETLD-GVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCL 397 (488)
Q Consensus 320 ~a~G~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~ 397 (488)
.+.|..++..+.+...... ++- +..++.+-+||++||.++..|...+.|.. -.+..+|+++||.|+|+.+.|++
T Consensus 387 ~~~G~~R~~~~~~~~~~~~~~v~----kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~i 462 (545)
T KOG2531|consen 387 VPKGTLRFIFENKELSAERIEVA----KFSDPEIEARALVEGQFLSKRARAEPLGFKSNPPTRILVTGGASRNEAILQII 462 (545)
T ss_pred CCccceEEEecCCccchhhcccc----cCCCchHHHHHHHHHhHhHhhhhhccccCCCCCCceEEEecCccccHHHHHHH
Confidence 6788765544432211111 111 22358999999999999999999999975 34778999999999999999999
Q ss_pred HhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHH---HhhcccCCceeeccccCCchhhHHHHHHHHHHH
Q 011357 398 ASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMY---KDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKR 474 (488)
Q Consensus 398 Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~---~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y 474 (488)
|||||+||.+.+..+++++|+|+-|++|+++...|.+-.+..-. +..-.+.+...+|++.+ .+.|..++++|
T Consensus 463 adVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~~~~~~~~~~p~~~~L~~~p~~~~-----~e~Y~~ll~~~ 537 (545)
T KOG2531|consen 463 ADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFSNKTNYLSLTPSKLELACEPDSAN-----WEIYGPLLKRL 537 (545)
T ss_pred HHHhCCCeEeecCCchhhHHHHHHHHHHHHhccccccccceeeccccccCCccceeeecCCcch-----HHHHHHHHHHH
Confidence 99999999999999999999999999998766544432222111 10011245567888888 99999999999
Q ss_pred HHHHHHH
Q 011357 475 LEIENRL 481 (488)
Q Consensus 475 ~~~~~~l 481 (488)
+++.+.+
T Consensus 538 ~e~e~~l 544 (545)
T KOG2531|consen 538 SELEDTL 544 (545)
T ss_pred HHHHHhh
Confidence 9988754
No 21
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-56 Score=459.44 Aligned_cols=424 Identities=18% Similarity=0.201 Sum_probs=355.5
Q ss_pred HHHHHHHHHHHHhhc-----CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCc
Q 011357 2 WIEALDLMLQKLSKS-----LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSST 75 (488)
Q Consensus 2 ww~a~~~~~~~l~~~-----~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra 75 (488)
.|++++.|++.+.+. .....|.+|++++|+++.++|++. |+| + .++|.|+|+|+
T Consensus 55 I~~~V~~ci~~~~e~l~~~~~~~~~~~~igv~~qr~~~v~w~~~tg~p----------~----------~niI~W~D~Ra 114 (516)
T KOG2517|consen 55 IWQAVCRCIEKACEKLGVLNIKVVGATCIGVVNQREGSVLWNKRTGEP----------L----------TNIIVWMDHRA 114 (516)
T ss_pred HHHHHHHHHHHHHHhhccccccccccEEEEEEecCCceEEeecCCCCc----------c----------cceEEeecccc
Confidence 589999999986443 234458889999999999999985 985 6 79999999999
Q ss_pred HHHHHHHHHHhCCHHH-HHHHhCCCCCCCChHHHHHHHhhhCCch-hhhccccccchhhHHHHHhC---C---ccccccc
Q 011357 76 TAQCREIEKAVGGALE-LSKLTGSRGYERFTGPQIRKLFQTQPGV-YDDTERISVVSSFMASLLIG---A---YACIDET 147 (488)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~~~~tG~~~~~~~~~~kl~wl~~~~Pe~-~~~~~~~l~~~dyl~~~LTG---~---~~~~d~s 147 (488)
..+++++......... ....+|.+++++|..+||+||++|.|++ ....++.+...+|+.|++++ . +. +|.+
T Consensus 115 ~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~~~-~d~~ 193 (516)
T KOG2517|consen 115 VSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEVLKAKEEGGFDLGTFDTWLATGLTGRSSCHC-TDVT 193 (516)
T ss_pred HHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHHHHHHHHhcccchhhhhhheeecCCccceecc-cccc
Confidence 9999999987642111 2267999999999999999999999999 78888888888888887665 3 34 8999
Q ss_pred hhccccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCC
Q 011357 148 DAAGMNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTS 226 (488)
Q Consensus 148 ~As~t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~ 226 (488)
|+|++++||..++.||..+++.+| | .++||++..+++++|++. +..+|+.+|+||.++.+|++|+++|..+.++
T Consensus 194 Nas~t~~f~~~~~~wd~~~~~f~~lp--~~llp~i~s~~e~~g~~~---~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~ 268 (516)
T KOG2517|consen 194 NASRTGLFNTESGLWDLKLLDFFGLP--LNLLPDIRSSSEVYGTTA---AGDLGLLEGTPVSSCLGDQQASMVGQMCYKP 268 (516)
T ss_pred ccccccccchhhhhhhhhhhhhhCCC--cccCCccccccccccccc---ccccccccCcceeechhhHHHHHHhHhhhcC
Confidence 999999999999999999999999 8 899999999999999985 3456789999999999999999999999999
Q ss_pred CcEEEEeccccccccccCC-CCCCCccc--cccCccCCC---cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcC
Q 011357 227 GDLAISLGTSDTVFGITDD-PEPRLEGH--VFPNPVDTK---GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQT 299 (488)
Q Consensus 227 g~~~~s~GTs~~~~~~~~~-~~~~~~~~--~~~~~~~~g---~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~ 299 (488)
|+++.++||++++..++.. +.....+. +..+....| .|++++....++..++|+++.+.. +...++++.+.++
T Consensus 269 g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~~ 348 (516)
T KOG2517|consen 269 GCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEELNEIEKLAAEV 348 (516)
T ss_pred cceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 9999999999999888864 22222221 112221122 367788888899999999998742 2344556666665
Q ss_pred CCCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-
Q 011357 300 PPLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL- 374 (488)
Q Consensus 300 ~~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~- 374 (488)
. .+.++.|.|.|.|.|+|+ ++||+| |++.++ +..|+.||++|+|||++|++++.|+.
T Consensus 349 ~-~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~t-----------------s~~hia~A~leai~fqtr~Il~am~~~ 410 (516)
T KOG2517|consen 349 N-LTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDT-----------------SKEHLARAALEAIAFQTREILEAMERD 410 (516)
T ss_pred c-ccCceEEEccccCCCCCCCCcccceeEEEecCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 678899999999999998 688877 766554 99999999999999999999999986
Q ss_pred C-CCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCC--CCCHHHHHHhhcccCCce
Q 011357 375 P-SPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGS--FVPISNMYKDKLEKTSLS 451 (488)
Q Consensus 375 g-~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~--~~~~~~a~~~~~~~~~~~ 451 (488)
+ .++++++++||.++|++++|++||++|+||+++...|++++|||++|+.+ .|. |.+.+++. +.+..++
T Consensus 411 ~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a-----~~~~~~~~~~~~~---~~~~~~~ 482 (516)
T KOG2517|consen 411 GGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAA-----SGKWSYSSEEKAS---LTGVGKV 482 (516)
T ss_pred cCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhh-----cCCcchhhHHHHh---cCCCcce
Confidence 5 79999999999999999999999999999999999999999999999999 888 66666653 4578899
Q ss_pred eeccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011357 452 CKLAVTAGDQQLVSKYAVMMKKRLEIENRLVE 483 (488)
Q Consensus 452 ~~P~~~~~~~~~~~~Y~~~y~~y~~~~~~l~~ 483 (488)
|+|+.+. +.++.+|++|++++++-..
T Consensus 483 ~~P~~~~------~~~~~ky~~w~~ave~~~~ 508 (516)
T KOG2517|consen 483 FRPNIDD------KLLDKKYQIWLKAVERQLG 508 (516)
T ss_pred ecCCCCc------HHHHHHHHHHHHHHHHHhh
Confidence 9999864 8899999999999987654
No 22
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=6.2e-43 Score=339.58 Aligned_cols=196 Identities=25% Similarity=0.406 Sum_probs=180.2
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.||++++.+++++.++ .++.+|++|+||+|+++++++|++|+| + +|+|+|+|+|+.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~~~v~~D~~~~p----------l----------~~~i~w~D~R~~~~ 106 (245)
T PF00370_consen 47 EIWEAICEALKELLSQAGIDPEQIKAIGISGQGHGLVLLDKDGKP----------L----------RPAILWMDTRAAEE 106 (245)
T ss_dssp HHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SSEEEEEETTSSB----------S----------SCEE-TT-CTTHHH
T ss_pred HHHHHHHHHHHHHHhhcCcccceeEEEEeccccCCcceecccccc----------c----------cccccccccchhhH
Confidence 4999999999998765 678899999999999999999999996 7 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccC
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIR 158 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~ 158 (488)
++++.+.. ..+++++.||.++++.++++||+|+++|+||+|+++++|++++|||.|+|||+.+ +|+|+||+|++||++
T Consensus 107 ~~~l~~~~-~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~dyl~~~LtG~~~-~d~s~as~tgl~d~~ 184 (245)
T PF00370_consen 107 AEELNEEG-SPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAAKFLTLSDYLAYKLTGRAA-TDYSNASRTGLYDIR 184 (245)
T ss_dssp HHHHHHHT-HHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHHEEEEHHHHHHHHHHSC-E-EEHHHHCTSSSEETT
T ss_pred HHHHHhhc-CcceeeeeccccccccchHHHHHHHHHhCchhhhhhhhcccHHHHHHhhcccccc-ccccchhcccccccc
Confidence 99998864 3688999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhc
Q 011357 159 QRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 220 (488)
Q Consensus 159 ~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg 220 (488)
+++|++++++.+| + .++||+|+++++++|++++++|+++||++|+||++|+||++|+++|
T Consensus 185 ~~~w~~~~l~~~gi~--~~~lP~i~~~g~~~G~~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 185 TGQWDEELLEALGIP--EELLPEIVPPGEIIGTLTPEAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp TTEE-HHHHHHTTSG--GGGSCEEE-TTSEEEEEEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred ccccCHHHHHhhCCC--hhhCCcEecCCCeeEEECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 9999999999999 7 7899999999999999999999999999999999999999999987
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.97 E-value=7.1e-31 Score=246.54 Aligned_cols=180 Identities=24% Similarity=0.288 Sum_probs=148.4
Q ss_pred EEEEeccccccccccCCCCCCCcccc--ccCccCCCcEEEeeeeechhhHHHHHHHHhcC-------cc-HHHHH-HHHh
Q 011357 229 LAISLGTSDTVFGITDDPEPRLEGHV--FPNPVDTKGYMIMLVYKNASLTREDVRNRCAE-------KS-WDVFN-KYLQ 297 (488)
Q Consensus 229 ~~~s~GTs~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~-------~~-~~~l~-~~a~ 297 (488)
+++|+|||+++..++++|..+..+.. +.....++.|++++.++++|.+++|+++.+.. .. ++.+. ....
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEAA 80 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHhh
Confidence 57899999999998888885544432 22112478899999999999999999998521 11 23333 2333
Q ss_pred cCCCCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcC
Q 011357 298 QTPPLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFG 373 (488)
Q Consensus 298 ~~~~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~ 373 (488)
..++++.+++|+|+++|+|.|. +++|.| |++.+ |++.|++||++||++|.+|++++.|+
T Consensus 81 ~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~-----------------~~~~~~~rAv~Egia~~~~~~~~~l~ 143 (198)
T PF02782_consen 81 ASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSD-----------------TTRADLARAVLEGIAFSLRQILEELE 143 (198)
T ss_dssp HTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETT-----------------TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccceeeeeccccCcccccccccccccccCCcc-----------------cCHHHHHHHHHHhHHHHHHHhhhhcc
Confidence 5567789999999999999997 467766 65543 48999999999999999999999997
Q ss_pred C--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhc
Q 011357 374 L--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 374 ~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
+ +.++++|+++||++||++|+|++||++|+||.+++..|++++|||++|++|
T Consensus 144 ~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a 197 (198)
T PF02782_consen 144 ELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVA 197 (198)
T ss_dssp HHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHH
T ss_pred ccccccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhh
Confidence 5 788999999999999999999999999999999999999999999999987
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.54 E-value=4.3e-07 Score=88.38 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-eEEEecCCcCCHHHHHHHHhHhCCceEeecCCC-hhHHHHHHH
Q 011357 348 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPR-RIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALR 421 (488)
Q Consensus 348 ~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~-~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e-~~alGaA~~ 421 (488)
.+++++++++++++++.++..+..+. ++ +|+++||+++|+.|+|.+++.+|+||.+++.++ .+|+|||++
T Consensus 177 ~~~~di~~~~~~~va~~i~~~~~~~~----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 177 VKKEDILAGVYESIAERVAEMLQRLK----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcC----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 38999999999999999998776552 44 799999999999999999999999999988874 899999974
No 25
>PRK13317 pantothenate kinase; Provisional
Probab=97.70 E-value=0.00098 Score=65.73 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=100.7
Q ss_pred CcEEEEeccccccccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHh-cCccHHHHHHHHhcCCCCCCC
Q 011357 227 GDLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRC-AEKSWDVFNKYLQQTPPLNGG 305 (488)
Q Consensus 227 g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~-~~~~~~~l~~~a~~~~~g~~g 305 (488)
..+.+++||...+..+.+. .+.-.+.+..||..+.=+.+.+ ...++++|.+++.+-.+-.-.
T Consensus 97 ~~~i~~iG~g~si~~~~g~-----------------~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~D 159 (277)
T PRK13317 97 DYIFTNIGTGTSIHYVDGN-----------------SQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNID 159 (277)
T ss_pred cEEEEEecCceEEEEEeCC-----------------ceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCcccc
Confidence 4577888888665444221 1222222333333343344444 346899999999764322212
Q ss_pred eEeEeccCCC---CCCCCC-CcceeeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeE
Q 011357 306 KMGFYYKEHE---ILPPLP-VGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRI 381 (488)
Q Consensus 306 l~~lP~l~G~---r~P~~a-~G~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i 381 (488)
+ .+-.+.|. ..|.+. .++|+- ..+ -++ ....++|++++++..++..+....-.+.+...+++|
T Consensus 160 l-~v~dIy~~~~~~l~i~s~csvFak-v~~-------l~~----~g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~I 226 (277)
T PRK13317 160 L-KVGDIYKGPLPPIPGDLTASNFGK-VLH-------HLD----SEFTSSDILAGVIGLVGEVITTLSIQAAREKNIENI 226 (277)
T ss_pred c-eeccccCCCCCCCCCceeEehhhh-hhh-------hhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 2 22333332 223233 335531 000 011 234799999999999988877764333222345789
Q ss_pred EEec-CCcCCHHHHHHHHhHh---CCceEeecCC-ChhHHHHHHHHH
Q 011357 382 IATG-GASANQTILSCLASIY---GCDIYTVQRP-DSASLGAALRAA 423 (488)
Q Consensus 382 ~~~G-Gga~s~~~~Qi~Advl---g~pV~~~~~~-e~~alGaA~~A~ 423 (488)
+++| |.++|+.+++.+.+.+ +.++..++.+ -.+|+|||+.+.
T Consensus 227 vf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 227 VYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred EEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 9999 6799999999999999 7888887754 488999999875
No 26
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.67 E-value=0.00027 Score=70.75 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=87.0
Q ss_pred eeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCcceeee-ecccccccccCcccccc
Q 011357 267 MLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYI-LENFEGETLDGVNEVEV 345 (488)
Q Consensus 267 ~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~~a~G~~~l~-~~~~~~~~~~g~~~~~~ 345 (488)
..|...+|..++-+.+.++ .+.+++.+.+.+..+- + -+ +.++- +|.-+ +-+ -+.
T Consensus 258 ~~CAAGtGrFLE~~A~~Lg-v~v~E~~~~A~~~~~~---v----~i-~S~Ca-----VF~eSevi~----------~~~- 312 (396)
T COG1924 258 DKCAAGTGRFLEVIARRLG-VDVEELGKLALKATPP---V----KI-NSRCA-----VFAESEVIS----------ALA- 312 (396)
T ss_pred cccccccchHHHHHHHHhC-CCHHHHHHHHhcCCCC---c----cc-CCeeE-----EEehHHHHH----------HHH-
Confidence 3566778888999888885 4789999988765320 1 11 11111 12100 000 000
Q ss_pred cCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCe-EEEecCCcCCHHHHHHHHhHhCCceEeecCCC-hhHHHHHHHH
Q 011357 346 KEFDPPSEVRALVEGQFLSMRG-HAERFGLPSPPRR-IIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRA 422 (488)
Q Consensus 346 ~~~~~~~~~rAvlEgia~~~r~-~~~~l~~g~~~~~-i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e-~~alGaA~~A 422 (488)
.-.+++++..++.++++-++.. .+... ++++ |++.||-++|..+...+.|.+|++|.+++.++ .+|+|||++|
T Consensus 313 ~G~~~EdI~AGl~~Sv~~~v~~~~~~~~----~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a 388 (396)
T COG1924 313 EGASPEDILAGLAYSVAENVAEKVIKRV----DIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIA 388 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHH
Confidence 1138899999999888876655 33332 3333 99999999999999999999999999988544 7899999987
Q ss_pred Hh
Q 011357 423 AH 424 (488)
Q Consensus 423 ~~ 424 (488)
-.
T Consensus 389 ~~ 390 (396)
T COG1924 389 KE 390 (396)
T ss_pred hh
Confidence 54
No 27
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.62 E-value=0.00039 Score=68.39 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=84.3
Q ss_pred eeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCcceeeeecccccccccCcccccccC
Q 011357 268 LVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKE 347 (488)
Q Consensus 268 ~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~~a~G~~~l~~~~~~~~~~~g~~~~~~~~ 347 (488)
.|...+|..++-..+.++ .+.++|.+++.+.. .. |+--+.++ ++|- +++ ++++- -..
T Consensus 156 kCAAGTGrFLE~~A~~Lg-i~leel~~~a~~~~---~~----p~~Iss~C-----tVFA---eSe----vi~l~---~~G 212 (293)
T TIGR03192 156 KCAAGTGRGMEVISDLMQ-IPIADLGPRSFDVE---TE----PEAVSSIC-----VVFA---KSE----ALGLL---KAG 212 (293)
T ss_pred cccccccHHHHHHHHHcC-CCHHHHHHHHHhcC---CC----CCCcCCcc-----eEec---cHh----HHHHH---HCC
Confidence 455567888888888775 36677877663221 00 11111121 1220 000 00000 012
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ec-CCChhHHHHHHHHHhc
Q 011357 348 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQ-RPDSASLGAALRAAHG 425 (488)
Q Consensus 348 ~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~-~~e~~alGaA~~A~~~ 425 (488)
.+++|+++++.++++-.+...+..+. --+.|.++||.++|+.+.+.+.+.||++|.. +. ..-.+|+|||++|...
T Consensus 213 ~~~edI~aGl~~sia~rv~~~~~~~~---i~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 213 YTKNMVIAAYCQAMAERVVSLLERIG---VEEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcccC---CCCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHHH
Confidence 48999999999999977655554432 1256999999999999999999999999984 43 3458899999998643
No 28
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.45 E-value=0.0011 Score=67.88 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=85.1
Q ss_pred eeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCcceeee-ecccccccccCccccccc
Q 011357 268 LVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYI-LENFEGETLDGVNEVEVK 346 (488)
Q Consensus 268 ~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~~a~G~~~l~-~~~~~~~~~~g~~~~~~~ 346 (488)
.|...+|..++-+.+.+. .+.++|.+++.+... +.+ -+ ..++ .+|.-+ .-+ .+ + .
T Consensus 271 kCAAGTGrFLE~~A~~Lg-i~ieEl~~lA~~~~~--~pv----~I-sS~C-----tVFaeSevIs-----ll--~----~ 326 (404)
T TIGR03286 271 ICAGASGRFLEMTAKRLG-VDITELGKLALKGMP--EKV----RM-NSYC-----IVFGIQDLVT-----AL--A----E 326 (404)
T ss_pred cccccCcHHHHHHHHHhC-CCHHHHHHHHHhCCC--CCC----Cc-cCcc-----cccccHhHHH-----HH--H----C
Confidence 345557888888888774 578889888765310 000 00 1111 112000 000 00 0 1
Q ss_pred CCChHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCC-hhHHHHHHHH
Q 011357 347 EFDPPSEVRALVEGQFLSMRG-HAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRA 422 (488)
Q Consensus 347 ~~~~~~~~rAvlEgia~~~r~-~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e-~~alGaA~~A 422 (488)
..+++|++.++..+|+-.+.. .++.+. .-+.|.++||.++|+.+...+.+.+|.+|.+++.++ .+|+|||++|
T Consensus 327 G~~~eDIaAGl~~SIa~rv~~~l~~~~~---i~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 327 GASPEDVAAAACHSVAEQVYEQQLQEID---VREPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcCC---CCCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence 248999999999999988774 344332 124599999999999999999999999999988665 7799999987
No 29
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.38 E-value=0.0017 Score=65.90 Aligned_cols=128 Identities=12% Similarity=0.016 Sum_probs=84.7
Q ss_pred eeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCcceeeeecccccccccCcccccccCC
Q 011357 269 VYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEF 348 (488)
Q Consensus 269 ~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~~a~G~~~l~~~~~~~~~~~g~~~~~~~~~ 348 (488)
|...+|..++-..+.++ .+.++|.+++.+.. + |+--+.++ .+|- +++ +.++- -...
T Consensus 299 CAAGTGrFLE~mA~~Lg-i~leEl~~lA~~a~---~-----pv~ISS~C-----tVFA---ESE----VIsll---a~G~ 354 (432)
T TIGR02259 299 CAAGCGRYLGYIADEMN-MGLHELGPLAMKSS---K-----PARINSTC-----TVFA---GAE----LRDRL---ALGD 354 (432)
T ss_pred ccccchHHHHHHHHHcC-CCHHHHHHHHhcCC---C-----CCCcCCcc-----eEEe---hHH----HHHHH---HCCC
Confidence 44457788888887775 36678887765432 1 11111122 2231 000 00000 0124
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh-----CCceEeecCCC-hhHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY-----GCDIYTVQRPD-SASLGAALRA 422 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl-----g~pV~~~~~~e-~~alGaA~~A 422 (488)
+++|++.++.++|+-.+...+..+.. .-+.|.++||.++|+.+.+.+.+.+ +.+|.+++.++ .+|+|||+.|
T Consensus 355 ~reDIaAGL~~SIA~Rv~s~l~r~~~--i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 355 KREDILAGLHRAIILRAISIISRSGG--ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccC--CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 89999999999999888777666532 2357999999999999999999999 57788877554 7899999875
No 30
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.12 E-value=0.0032 Score=61.20 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=80.9
Q ss_pred eeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCccee-eeecccccccccCccccccc
Q 011357 268 LVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHR-YILENFEGETLDGVNEVEVK 346 (488)
Q Consensus 268 ~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~~a~G~~~-l~~~~~~~~~~~g~~~~~~~ 346 (488)
.|...+|..++-+.+.+. -+.++|.+++.+... |.--+.++ .+|- -..-+ ++. .
T Consensus 128 kCAAGTG~FLe~~A~~L~-i~leel~~~a~~~~~--------~~~iss~C-----tVFaeSevi~-----~~~------~ 182 (262)
T TIGR02261 128 QCASGSGQFLENIARYLG-IAQDEIGSLSQQADN--------PEKVSGIC-----AVLAETDVIN-----MVS------R 182 (262)
T ss_pred cccccccHHHHHHHHHhC-CCHHHHHHHHhcCCC--------CCCcCCCc-----eEEchhhHHH-----HHH------C
Confidence 355567888888888775 467888877654320 01001111 1220 00000 000 1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhC-Cc----eEeec-CCChhHHHHHH
Q 011357 347 EFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG-CD----IYTVQ-RPDSASLGAAL 420 (488)
Q Consensus 347 ~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg-~p----V~~~~-~~e~~alGaA~ 420 (488)
-.++++++.++.++++-.+...++.+. ..-++|.++||.++|+.+.+.+.+.++ .+ |.+++ ..-.+|+|||+
T Consensus 183 G~~~edI~aGl~~sia~r~~~~~~~~~--~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl 260 (262)
T TIGR02261 183 GISAPNILKGIHESMADRLAKLLKSLG--ALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAAL 260 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccC--CCCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHH
Confidence 248999999999999998766666653 233469999999999999999999994 23 33222 23478999998
Q ss_pred HH
Q 011357 421 RA 422 (488)
Q Consensus 421 ~A 422 (488)
+|
T Consensus 261 ~~ 262 (262)
T TIGR02261 261 WG 262 (262)
T ss_pred cC
Confidence 74
No 31
>PRK13410 molecular chaperone DnaK; Provisional
Probab=96.95 E-value=0.0026 Score=70.49 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceE-eecCCChhHHHHHHHHHhc
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIY-TVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~-~~~~~e~~alGaA~~A~~~ 425 (488)
+.+...+++-+.-.++..++.-.. ...++.|+++||+++.|.+.+++.++||.++. ..+..|+.|+|||+.|+.-
T Consensus 301 E~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 301 ESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhh
Confidence 444555555555555555543321 23678999999999999999999999998654 4567889999999999976
No 32
>CHL00094 dnaK heat shock protein 70
Probab=96.83 E-value=0.0036 Score=69.07 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=44.0
Q ss_pred CCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 376 SPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 376 ~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
..++.|+++||+++.|.+.++++++||.++.. .+..|+.|+|||+.|+..
T Consensus 327 ~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 327 SDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred hhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHh
Confidence 36789999999999999999999999987654 456779999999999986
No 33
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.68 E-value=0.0061 Score=67.43 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCC-ceEeecCCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGC-DIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~-pV~~~~~~e~~alGaA~~A~~~ 425 (488)
-+++.+.+++-+.-.++..++.-.- ...++.|+++||.++-|.+.+++.+.||. |+...++.|+.|+|||+.|+.-
T Consensus 325 fe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l 402 (657)
T PTZ00186 325 FEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVL 402 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHh
Confidence 4456666666666666666654332 24688999999999999999999999997 5566678899999999999864
No 34
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.60 E-value=0.0038 Score=60.35 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeec-CCChhHHHHHH
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAAL 420 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~ 420 (488)
.+++..+++.+.-.++..++. .+++.|+++||+|+.+.+.+.+.+.||.||..+. +.+++++|+|+
T Consensus 172 ~~~i~~~~~~i~~~i~~~l~~----~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 172 FPVVKPVYQKMASIVKRHIEG----QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 356677777777777776663 3567999999999999999999999999998866 45688999986
No 35
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.57 E-value=0.0067 Score=59.65 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCC-ChhHHHHHHH
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRP-DSASLGAALR 421 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~-e~~alGaA~~ 421 (488)
-.++++..+|-+.-.++..++. ..++.|+++||+|+-+.+.+++.+.||.||.+...+ ..+++|+|+.
T Consensus 198 ~~~ii~~~~~~i~~~i~~~l~~----~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~ 266 (267)
T PRK15080 198 IFPVVKPVVEKMASIVARHIEG----QDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALS 266 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhh
Confidence 4567777777777776666653 357899999999999999999999999999987755 5899999975
No 36
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.36 E-value=0.012 Score=65.14 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
-..+...+++-+.-.++..++...- ...++.|+++||.++.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-
T Consensus 298 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l 375 (627)
T PRK00290 298 FEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVL 375 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHh
Confidence 3445555666555555555554432 246889999999999999999999999987653 457789999999999864
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=96.34 E-value=0.012 Score=64.91 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceE-eecCCChhHHHHHHHHHhc
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIY-TVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~-~~~~~e~~alGaA~~A~~~ 425 (488)
.-+.+...+++.+.-.++..++...- ...++.|+++||+++.|.+.+++++.||.++. ..+..|+.|+|||+.|+.-
T Consensus 299 efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l 377 (616)
T PRK05183 299 QFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADIL 377 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHh
Confidence 34455566666666666666655432 34688999999999999999999999998654 4467889999999999864
No 38
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=96.16 E-value=0.018 Score=63.26 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceE-eecCCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIY-TVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~-~~~~~e~~alGaA~~A~~~ 425 (488)
-..+..-+++-+.-.++..++...- ...++.|+++||+++.|.+.+++.+.||.++. ..+..|+.|+|||+.|+.-
T Consensus 284 fe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l 361 (599)
T TIGR01991 284 FEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLL 361 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHh
Confidence 3444555555555555555554332 24678999999999999999999999998654 4457889999999999864
No 39
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=96.12 E-value=0.015 Score=59.13 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC---CCCCC-eEEEecCCcCCHHHHHHHHhHhCCceEeec-CCChhHHHHHHHHHh
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL---PSPPR-RIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 424 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~---g~~~~-~i~~~GGga~s~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~~A~~ 424 (488)
-.+++...++.+.-.++..++.... ...++ .|+++||+|+-+.+.+++.+.++.||.+.. ..++.|+|||+.+..
T Consensus 244 ~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 244 IREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhc
Confidence 3456667777777777777776542 12344 699999999999999999999999998876 667889999999765
No 40
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.11 E-value=0.017 Score=63.49 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
-+.+..-+++.+.-.++..++.-.. ...++.|.++||.++.|.+.+++.+.+|.++.. .+..|+.|+|||+.|+.-
T Consensus 296 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l 373 (595)
T TIGR02350 296 FEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVL 373 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHh
Confidence 3444555555555555555544332 236789999999999999999999999976654 457789999999999864
No 41
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.06 E-value=0.18 Score=49.71 Aligned_cols=162 Identities=15% Similarity=0.063 Sum_probs=92.6
Q ss_pred EEEEeccccccccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHh-cCccHHHHHHHHhcCCCCCCCeE
Q 011357 229 LAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRC-AEKSWDVFNKYLQQTPPLNGGKM 307 (488)
Q Consensus 229 ~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~-~~~~~~~l~~~a~~~~~g~~gl~ 307 (488)
+.+++||+.-+..+... .+.-++.+.-||..+-=+...+ ...+++++.+++++-.+-.-.+
T Consensus 104 llvnIGsGvSi~~v~~~-----------------~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl- 165 (279)
T TIGR00555 104 LLVNIGTGTSILYVDGD-----------------NYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDL- 165 (279)
T ss_pred EEEEecCCeEEEEEcCc-----------------cEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCccccc-
Confidence 67888998665444211 2222222222333222344444 3478999999998643222112
Q ss_pred eEeccCCCCCCC-----CC-Cccee-eeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCe
Q 011357 308 GFYYKEHEILPP-----LP-VGFHR-YILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRR 380 (488)
Q Consensus 308 ~lP~l~G~r~P~-----~a-~G~~~-l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~ 380 (488)
.+-.+.|...+. +. ...|| +... .++ ...+++|++++++..|+..+-...-........++
T Consensus 166 ~V~dIYg~~y~~~~L~~d~iASsfGkv~~~--------~~~----~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~ 233 (279)
T TIGR00555 166 LVGDIYGGDYSESGLDGSLTASSFGKVLSK--------HLD----QSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDR 233 (279)
T ss_pred ccccccCCCCCCCCCCcceeeeccchhhcc--------ccc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 234444432221 11 22233 1100 001 23479999999999999977665442222235788
Q ss_pred EEEecC-CcCCHHHHHHHHhHhC---CceEeecC-CChhHHHHHH
Q 011357 381 IIATGG-ASANQTILSCLASIYG---CDIYTVQR-PDSASLGAAL 420 (488)
Q Consensus 381 i~~~GG-ga~s~~~~Qi~Advlg---~pV~~~~~-~e~~alGaA~ 420 (488)
|+..|| ...++..++.++..++ ..+..++. .-.+|+|||+
T Consensus 234 IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 234 IVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 999999 5688999999999886 34555553 3478899886
No 42
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.04 E-value=0.014 Score=64.14 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
..+..-+++.+.-.++.+++.... ...++.|.++||+++.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-
T Consensus 301 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~ 377 (602)
T PF00012_consen 301 EELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAIL 377 (602)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhh
Confidence 344555566665556666655432 346789999999999999999999999986654 456789999999999864
No 43
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.03 E-value=0.026 Score=61.87 Aligned_cols=75 Identities=24% Similarity=0.246 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
-+++.+-+++-+.-.++..++... ...++.|+++||.++.|.+.+++.+.||+++.. .+..|+.|+|||+.|+.-
T Consensus 282 fe~l~~~l~~~~~~~i~~~L~~a~-~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l 357 (595)
T PRK01433 282 LEQLILPLVERTINIAQECLEQAG-NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENL 357 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHh
Confidence 344555555555555555444433 246899999999999999999999999987754 457789999999999863
No 44
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=96.00 E-value=0.052 Score=55.55 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCC-ceEeecC-----CChhHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC-DIYTVQR-----PDSASLGAALRA 422 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~-pV~~~~~-----~e~~alGaA~~A 422 (488)
+++|+++-+.|=.|.++.+.++.+.. .+++|+++|||++|+.+++.+...++. +|...+. .---|+.-|++|
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~~--~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFPP--QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-T--T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCC--CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 58999999999999999999998853 478999999999999999999998875 7876541 223477778888
Q ss_pred HhccccccCCCCCCHHHHH
Q 011357 423 AHGYLCSKKGSFVPISNMY 441 (488)
Q Consensus 423 ~~~~~~~~~G~~~~~~~a~ 441 (488)
...+ .|.-.++....
T Consensus 336 ~~~~----~g~~~~lp~vT 350 (364)
T PF03702_consen 336 YRRL----NGLPNNLPSVT 350 (364)
T ss_dssp HHHH----CT---S-HHHH
T ss_pred HHHH----cCCCCCCCccc
Confidence 8764 45444555443
No 45
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.81 E-value=0.028 Score=62.61 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 354 VRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
..-+++-+.--++..++.-.- ...++.|+++||.++.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-
T Consensus 341 ~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~l 414 (673)
T PLN03184 341 CSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVL 414 (673)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHh
Confidence 333344433334444433221 235789999999999999999999999986643 567899999999999864
No 46
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.64 E-value=0.023 Score=63.19 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceE-eecCCChhHHHHHHHHHhc
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIY-TVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~-~~~~~e~~alGaA~~A~~~ 425 (488)
+++..-+++-+.-.++..++.... ...++.|+++||.++.|.+.+++.+.||.++. ..+..|+.|+|||+.|+.-
T Consensus 340 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 340 EELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhh
Confidence 344455555555555555554332 23578999999999999999999999998764 3457889999999999874
No 47
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.64 E-value=0.03 Score=62.20 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhC-Cce-EeecCCChhHHHHHHHHHhc
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYG-CDI-YTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg-~pV-~~~~~~e~~alGaA~~A~~~ 425 (488)
+.+..-+++.+.-.++..++.-.. ...++.|.++||.++.|.+.+++.+.|+ .++ ...+..|+.|+|||+.|+.-
T Consensus 305 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~l 382 (653)
T PTZ00009 305 EELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL 382 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHh
Confidence 344555555555555555554332 2357899999999999999999999996 454 55678899999999999864
No 48
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=95.63 E-value=0.05 Score=55.64 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecC-----CChhHHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR-----PDSASLGAALRAA 423 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~-----~e~~alGaA~~A~ 423 (488)
+++|+++-+.|=.|.++.+.++.+.. ..++|+++|||++|+.+++.+...+..+|...+. .---|+.-|++|.
T Consensus 260 s~~D~~aTlt~~TA~sI~~~~~~~~~--~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~ 337 (365)
T PRK09585 260 SPEDVQATLTELTAASIARAVRRLPP--GPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAV 337 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccC--CCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHH
Confidence 78999999999999999998877642 3468999999999999999999999766665443 1123555566666
Q ss_pred hcc
Q 011357 424 HGY 426 (488)
Q Consensus 424 ~~~ 426 (488)
..+
T Consensus 338 ~~l 340 (365)
T PRK09585 338 RTL 340 (365)
T ss_pred HHH
Confidence 553
No 49
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.31 E-value=0.039 Score=61.23 Aligned_cols=75 Identities=24% Similarity=0.377 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhC-CceE-eecCCChhHHHHHHHHHhc
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYG-CDIY-TVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg-~pV~-~~~~~e~~alGaA~~A~~~ 425 (488)
+++..-+++-+.-.++..++.-.- ...++.|+++||.++.|.+.+++.+.|| .++. ..+..|+.|+|||+.|+.-
T Consensus 300 e~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l 377 (653)
T PRK13411 300 EELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL 377 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhh
Confidence 344444454444444444443321 2347899999999999999999999997 5554 4567889999999999864
No 50
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=95.19 E-value=0.051 Score=55.11 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--C-CCCC-eEEEecCCcCCHHHHHHHHhHhCCceEeec-CCChhHHHHHHHHHh
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL--P-SPPR-RIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 424 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~--g-~~~~-~i~~~GGga~s~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~~A~~ 424 (488)
.+++...++++.-.++..++.... . ..++ .|+++||+|+.+.+.+.+.+.++.||.+.. ..++.+.|||+.+..
T Consensus 246 ~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 246 REALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 456666677777777777776532 1 1123 599999999999999999999999998876 566789999999765
No 51
>PRK11678 putative chaperone; Provisional
Probab=95.07 E-value=0.11 Score=55.01 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhC-CceEeecCCChhHHHHHHHHHh
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG-CDIYTVQRPDSASLGAALRAAH 424 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg-~pV~~~~~~e~~alGaA~~A~~ 424 (488)
+++++..++-+.-.++..++.. +..++.|+++||.|+.|.+.+++.+.|| .|+...+.-++.|.|+|+.|..
T Consensus 375 e~ii~~~l~ri~~~i~~~L~~a--~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 375 EEAISQPLARILELVQLALDQA--QVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHh
Confidence 3444445554444444444433 4557899999999999999999999996 6888888888999999998864
No 52
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=95.07 E-value=0.064 Score=54.44 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC--CCC-C-CeEEEecCCcCCHHHHHHHHhHhCCceEeec-CCChhHHHHHHHHHh
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL--PSP-P-RRIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 424 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~--g~~-~-~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~~A~~ 424 (488)
-.+++...++++.-.++..++.... ... . +.|+++||+|+-|.+.+.+++.++.||.+.. +.++.++|||+++..
T Consensus 248 ~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 248 VREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 3455666666777667777666532 112 2 3699999999999999999999999999876 567889999998654
No 53
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=95.03 E-value=0.047 Score=55.35 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC---CCCCe-EEEecCCcCCHHHHHHHHhHhCCceEeec-CCChhHHHHHHHHHh
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGLP---SPPRR-IIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 424 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~g---~~~~~-i~~~GGga~s~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~~A~~ 424 (488)
.+++...++.+.-.++..++..... ..++. |+++||+|+-+.+.+.+++.++.||.+.. ..++.++|||+.+..
T Consensus 250 ~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 250 REALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 4555666667777777777655311 12344 99999999999999999999999998875 456788999999765
No 54
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=94.48 E-value=0.083 Score=53.73 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCC---CCCCC-eEEEecCCcCCHHHHHHHHhHhCCceEee-cCCChhHHHHHHH
Q 011357 354 VRALVEGQFLSMRGHAERFGL---PSPPR-RIIATGGASANQTILSCLASIYGCDIYTV-QRPDSASLGAALR 421 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~---g~~~~-~i~~~GGga~s~~~~Qi~Advlg~pV~~~-~~~e~~alGaA~~ 421 (488)
+...++.+.-.++..++.... ...++ .|+++||+|+-+.+.+.+++.+++||.+. ++.++.++|++..
T Consensus 251 i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 251 MRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 355555555556666655431 12345 59999999999999999999999999986 4566788899887
No 55
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.11 Score=55.95 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
.+++...+++=+---+...+..... ...+..|=++||+++.|.+-+++++.||++..+ ++..|+.|+|||+.+|.-
T Consensus 305 fEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIl 382 (727)
T KOG0103|consen 305 FEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAIL 382 (727)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhc
Confidence 4456666666666666666666432 456778999999999999999999999999865 467899999999998863
No 56
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=93.77 E-value=0.19 Score=51.24 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecC
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL---PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR 410 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~---g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~ 410 (488)
.++++.+++-++-.++..++.+.. +.+++.|+++||+++-+-+...++..||.||++.++
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P 315 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANP 315 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecCh
Confidence 457888899999999998886643 457899999999999999999999999999998753
No 57
>PLN02920 pantothenate kinase 1
Probab=93.74 E-value=2.7 Score=43.27 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=94.0
Q ss_pred cEEEEeccccccccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHh-cCccHHHHHHHHhcCCCCCCCe
Q 011357 228 DLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRC-AEKSWDVFNKYLQQTPPLNGGK 306 (488)
Q Consensus 228 ~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~-~~~~~~~l~~~a~~~~~g~~gl 306 (488)
-+.+++||+.-+..+.. ++.|--.+.+.-||..+-=+...+ ...+|+++.++|.+-..-.-.
T Consensus 167 yLLVNIGSGVSilkV~~----------------~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvD- 229 (398)
T PLN02920 167 YLLVNIGSGVSMIKVDG----------------DGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVID- 229 (398)
T ss_pred eEEEEcCCCEEEEEEeC----------------CCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccC-
Confidence 47789999876544432 223333333333443333333343 347899999998753221112
Q ss_pred EeEeccCCCC-CC-----CCC-Cccee-eeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 011357 307 MGFYYKEHEI-LP-----PLP-VGFHR-YILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPP 378 (488)
Q Consensus 307 ~~lP~l~G~r-~P-----~~a-~G~~~-l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~ 378 (488)
+.+-.+.|.. .+ .+. ...|| +..+. .+....+++|++|+++--|+..+-++.-...+...+
T Consensus 230 llVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~-----------~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~~~i 298 (398)
T PLN02920 230 MLVGDIYGGMDYSKIGLSSTTIASSFGKAISDN-----------KELEDYKPEDVARSLLRMISNNIGQISYLNALRFGL 298 (398)
T ss_pred ceeccccCCCCCCCCCCCccceeeccCcccccc-----------cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2344555522 11 121 22343 11110 001234799999999999999888765433333568
Q ss_pred CeEEEecCCcCCH-HHHHHHHhHhC------C-ceEeecCCChhHHHHHHHHH
Q 011357 379 RRIIATGGASANQ-TILSCLASIYG------C-DIYTVQRPDSASLGAALRAA 423 (488)
Q Consensus 379 ~~i~~~GGga~s~-~~~Qi~Advlg------~-pV~~~~~~e~~alGaA~~A~ 423 (488)
++|+.+|...+++ ..|+.++-+.+ + ++..-...-.+|+||++..-
T Consensus 299 k~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 299 KRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred CEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 9999999998887 77775655542 2 33332344588999877543
No 58
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.94 Score=45.56 Aligned_cols=195 Identities=16% Similarity=0.140 Sum_probs=108.7
Q ss_pred HHHHHcCCCCCCeEEe---ccChhHHhhhccC-CCCCCcEEEEeccccccccccCCCCCCCccccccCccCCCcEEEeee
Q 011357 194 YFVERFHFNKNCLVVQ---WSGDNPNSLAGLT-LSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLV 269 (488)
Q Consensus 194 ~~A~~~GL~~g~pV~~---g~~D~~aa~lg~g-~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 269 (488)
.+|+.+.+.-+.|++. ..+=-.++.+-.+ .+.+=.+++|-|-+.++.+. ..|.|-+.+.
T Consensus 92 ~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVSGGHTqli~~~-----------------~~g~y~ilGe 154 (342)
T COG0533 92 TAAKALALALNKPLIPVNHLEGHIEAARLETGLAFPPVALLVSGGHTQLIAVR-----------------GIGRYEVLGE 154 (342)
T ss_pred HHHHHHHHHhCCCEeecchHHHHHHHHHhccCCCCCcEEEEEecCceEEEEEc-----------------CCCcEEEEee
Confidence 3444444444555554 3334445555444 33333344444444333111 1255655554
Q ss_pred ee--chhhHHHHHHHHhcC--ccHHHHHHHHhcCCCCCCCeEeEecc--CCCCCCCCCCcceeeeecccccccccCccc-
Q 011357 270 YK--NASLTREDVRNRCAE--KSWDVFNKYLQQTPPLNGGKMGFYYK--EHEILPPLPVGFHRYILENFEGETLDGVNE- 342 (488)
Q Consensus 270 ~~--~~g~~~~w~~~~~~~--~~~~~l~~~a~~~~~g~~gl~~lP~l--~G~r~P~~a~G~~~l~~~~~~~~~~~g~~~- 342 (488)
+. ..|.+++=+.+.++. ..=..++++|.+-.+ .-+.+|+- .+.+.-+ + |.||+-
T Consensus 155 TlDdA~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G~~---~~~~fP~~~~~~~~~Df----S------------FSGLkTa 215 (342)
T COG0533 155 TLDDAAGEAFDKVARLLGLGYPGGPAIEKLAKKGDP---DAFEFPRPMVKGKNLDF----S------------FSGLKTA 215 (342)
T ss_pred echhhhhHHHHHHHHHhCCCCCCcHHHHHHHhcCCC---CceeCCccccCCCCcce----e------------hHhHHHH
Confidence 43 468889998888752 112478888876433 23667762 1221111 1 222221
Q ss_pred -----------ccccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEee
Q 011357 343 -----------VEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTV 408 (488)
Q Consensus 343 -----------~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~ 408 (488)
.+....+++++..++.|.+.-.+-...++.-+....+++.+.||.|.|..+++++.+.. |..++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p 295 (342)
T COG0533 216 VLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIP 295 (342)
T ss_pred HHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcC
Confidence 00112357778888888877776666554322245688999999999999999999876 4456664
Q ss_pred cCCChhHHHHHHHHHhc
Q 011357 409 QRPDSASLGAALRAAHG 425 (488)
Q Consensus 409 ~~~e~~alGaA~~A~~~ 425 (488)
+ .+-+.==+||+|..|
T Consensus 296 ~-~~lCtDNaaMIA~ag 311 (342)
T COG0533 296 P-LELCTDNAAMIAYAG 311 (342)
T ss_pred C-hHhccchHHHHHHHH
Confidence 4 444444566666655
No 59
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.37 Score=48.69 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh-CCceEeec-----CCChhHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY-GCDIYTVQ-----RPDSASLGAALRA 422 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl-g~pV~~~~-----~~e~~alGaA~~A 422 (488)
+.+|+.+.+.|-.+-.+-..+..+ ....++++++|||++|+++|+.+|..+ |.+|...+ ....-|.+-|.+|
T Consensus 264 ~a~Dv~aTL~eltA~tIv~s~~~~--~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA 341 (371)
T COG2377 264 NAEDVQATLVELTAATIVKSVATL--QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLA 341 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhc--cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHH
Confidence 789999999998887777766633 246799999999999999999999999 55555322 2223344455555
Q ss_pred Hhc
Q 011357 423 AHG 425 (488)
Q Consensus 423 ~~~ 425 (488)
..-
T Consensus 342 ~r~ 344 (371)
T COG2377 342 WRT 344 (371)
T ss_pred HHH
Confidence 443
No 60
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=93.49 E-value=0.11 Score=52.81 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC---CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeec
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL---PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQ 409 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~---g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~ 409 (488)
..+.++.+++-++-.+++.++-+.. +.++++|+++||+++.+-+.+.+++-||.||.+.+
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 4567888899999999999986542 56899999999999999999999999999999875
No 61
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=92.07 E-value=0.37 Score=50.64 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHc----CC-C---CCCCeEEEecCCcCCHHHHHHHHhHhCCceEeec
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERF----GL-P---SPPRRIIATGGASANQTILSCLASIYGCDIYTVQ 409 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l----~~-g---~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~ 409 (488)
.-.+++++-+|-+.-.++..++.+ .. + ..+..|+++||+|+-+.+.+++.++|+.||++..
T Consensus 292 ~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~ 360 (420)
T PRK09472 292 TLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA 360 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeC
Confidence 455677887778877777766433 22 2 3467799999999999999999999999999853
No 62
>PRK14878 UGMP family protein; Provisional
Probab=92.07 E-value=0.31 Score=49.35 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeecCCChhHHHHHHHHHhc
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
++.++.+++.+.++-.+-...+...+...+++|.++||.+.|..+++.+.+.+ |.+|.+++ ...+.=|++|+|..+
T Consensus 213 ~~~diAa~fq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~-~~~~~D~GimIA~~g 291 (323)
T PRK14878 213 RLEDVCYSLRETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVP-PEYAGDNGAMIAYTG 291 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC-CCCCchHHHHHHHHH
Confidence 56899999999988888877776543234678999999999999999999988 88888865 333444555555544
No 63
>PRK09604 UGMP family protein; Validated
Probab=92.03 E-value=0.33 Score=49.32 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeecC----CChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQR----PDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~~----~e~~alGaA~~ 421 (488)
++.++.+++.+.++-.+.+.++...+...+++|.++||.+.|..+++.+.+.+ |.+|.+++. +.+.++|+|-+
T Consensus 226 ~~~~iA~s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 226 TKADIAASFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 47889999998888888877776543234678999999999999999999998 788877543 23444444444
Q ss_pred HHhc
Q 011357 422 AAHG 425 (488)
Q Consensus 422 A~~~ 425 (488)
-..-
T Consensus 306 ~~~~ 309 (332)
T PRK09604 306 ERLK 309 (332)
T ss_pred HHHH
Confidence 3333
No 64
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=92.03 E-value=0.42 Score=49.26 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCe-EEEecCCcCCHHHHHHHHhHhCCceEeecC
Q 011357 350 PPSEVRALVEGQFLSMR-GHAERFGLPSPPRR-IIATGGASANQTILSCLASIYGCDIYTVQR 410 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r-~~~~~l~~g~~~~~-i~~~GGga~s~~~~Qi~Advlg~pV~~~~~ 410 (488)
-.+++++.++-+.-.++ ..++.......+.. |+++||+|+.+.+.+++.+.|+.||++..+
T Consensus 285 l~~ii~~~~~ei~~~i~~~~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 285 LAEIIEARAEEILEIVKQKELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 34455555555555554 44443321124555 999999999999999999999999988754
No 65
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.61 Score=51.03 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=44.5
Q ss_pred CCCCeEEEecCCcCCHHHHHHHHhHhCCce-EeecCCChhHHHHHHHHHhc
Q 011357 376 SPPRRIIATGGASANQTILSCLASIYGCDI-YTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 376 ~~~~~i~~~GGga~s~~~~Qi~Advlg~pV-~~~~~~e~~alGaA~~A~~~ 425 (488)
..++.|.++||.++-|.+.+.+++.+++++ ..++..|+.|+|||+.|+.-
T Consensus 308 ~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l 358 (579)
T COG0443 308 SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVL 358 (579)
T ss_pred hhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhh
Confidence 478899999999999999999999999654 55678899999999999986
No 66
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=91.11 E-value=0.33 Score=54.23 Aligned_cols=75 Identities=21% Similarity=0.191 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhC---CceEeec----CCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG---CDIYTVQ----RPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg---~pV~~~~----~~e~~alGaA~~ 421 (488)
+++++.+++.+.++-.+...++.+.....+++|.++||.++|..+++.+.+.++ ..|.... ...+.++|.|++
T Consensus 630 ~~~~IAa~fh~tla~~L~~~a~~~~~~~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~ 709 (711)
T TIGR00143 630 DRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVA 709 (711)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHH
Confidence 678889999998888887777765432346789999999999999999998875 6676543 345778888877
Q ss_pred HH
Q 011357 422 AA 423 (488)
Q Consensus 422 A~ 423 (488)
|+
T Consensus 710 a~ 711 (711)
T TIGR00143 710 AA 711 (711)
T ss_pred hC
Confidence 64
No 67
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=91.05 E-value=0.48 Score=48.16 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeecCCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
+.++.+++.|.++-.+...++..-+...+++|+++||.|.|..+++.+.+.. |.++..++ .+-+.==|||+|..|
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~-~~~ctDNaaMIa~~g 313 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMD-ERYCIDNGAMIAYAG 313 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCC-hHhhhhhHHHHHHHH
Confidence 5689988888888777766664322134688999999999999999999886 77888755 344455566666655
No 68
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=90.27 E-value=1.1 Score=43.95 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHH-----HhHhCCceEeec-CCChhHHHHHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCL-----ASIYGCDIYTVQ-RPDSASLGAALRA 422 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~-----Advlg~pV~~~~-~~e~~alGaA~~A 422 (488)
.....|+++.+..+...+..+.. +.....|.++||..+|..+.+-+ ..+...|+.++. ....+++|||++|
T Consensus 193 ~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 193 EVARDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34455555555555555544321 22222399999999997766655 555666666655 3557899999987
No 69
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=0.86 Score=46.45 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=43.9
Q ss_pred CCCCeEEEecCCcCCHHHHHHHHhHhC-C-ceEeecCCChhHHHHHHHHHhc
Q 011357 376 SPPRRIIATGGASANQTILSCLASIYG-C-DIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 376 ~~~~~i~~~GGga~s~~~~Qi~Advlg-~-pV~~~~~~e~~alGaA~~A~~~ 425 (488)
..+.+|+++||.+|-|-..|++-|.|+ + |-.-.++.|+.|.|||..|++-
T Consensus 361 sdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvl 412 (663)
T KOG0100|consen 361 SDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVL 412 (663)
T ss_pred ccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccc
Confidence 578999999999999999999999994 4 5555678899999999999985
No 70
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=89.03 E-value=0.38 Score=48.65 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-C---CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCC-hhHHHHHHH
Q 011357 355 RALVEGQFLSMRGHAERFG-L---PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALR 421 (488)
Q Consensus 355 rAvlEgia~~~r~~~~~l~-~---g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e-~~alGaA~~ 421 (488)
+-.++.|.-.++.+++.+. + ..--+-|+++||+|+-+-+-+.+++-+|.||.+.+.++ +.+.|+..+
T Consensus 247 ~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~ 318 (326)
T PF06723_consen 247 EPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKL 318 (326)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHH
Confidence 3334444555555555432 1 01113499999999999999999999999999988654 667787664
No 71
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=88.28 E-value=1.5 Score=43.29 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecC--CcCCH-HHHHHHHhHhCCceEeecCCChhHHHHHHHHHh
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGG--ASANQ-TILSCLASIYGCDIYTVQRPDSASLGAALRAAH 424 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GG--ga~s~-~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~ 424 (488)
-++++.|+++..+...+-. . .+..+|+++|- .++.+ .+...+.+.|+.+|.++.. +.+|.|+|++|-=
T Consensus 241 A~dal~~~vameIasLl~l-~--~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~AiIA~d 311 (326)
T TIGR03281 241 ALDSLAMSVAMEIASLGLL-D--CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLALIAED 311 (326)
T ss_pred HHHHHHHHHHHHHHhheec-c--CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHHHHHH
Confidence 4578888888877764433 1 23348999998 67888 9999999999999999875 7799999999863
No 72
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=88.04 E-value=1.4 Score=44.45 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeecCCChhHHHHHHHHHhc
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
++.++.+++.+.++-.+.+.++...+...+++|.++||.+.|..+++.+.+.+ +.++.+++. ..+.=|+.++|+.|
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~-~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL-ELCTDNAAMIAAAG 309 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC-CCCChHHHHHHHHH
Confidence 46789999999998888887776543235678999999999999999999998 888887543 22333444444443
No 73
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=86.85 E-value=1.4 Score=44.43 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhH---hCCceEeecCCChhHHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASI---YGCDIYTVQRPDSASLGAALRAA 423 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Adv---lg~pV~~~~~~e~~alGaA~~A~ 423 (488)
++.++.+++.+.++-.+.+..+...+...+++|.++||.+.|..+++.+.+. .|.+|.++. ...+.=|++|+|.
T Consensus 214 ~~~diAasfq~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~-~~p~~D~Gi~Ig~ 290 (322)
T TIGR03722 214 RLEDVCYSLQETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPP-PEYAGDNGAMIAY 290 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCC-CCCCchHHHHHHH
Confidence 4688999999988888887777664323467899999999999999999995 467777644 3334444445553
No 74
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=1.9 Score=46.93 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceE--eecCCChhHHHHHHHHHhc
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIY--TVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~--~~~~~e~~alGaA~~A~~~ 425 (488)
.+++|..+|-+. .+++.... ...+..|+++||.++-|...+++.|.++-.-. -..+.|+.|.|||+.|+.-
T Consensus 311 ~dlf~~~~~~v~----~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 311 ADLFRSTLEPVE----KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred hHHHHHHHHHHH----HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhc
Confidence 456677776665 33333322 34689999999999999999999999985222 2346789999999999986
No 75
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=85.92 E-value=1.5 Score=45.07 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=48.9
Q ss_pred ChHHHH---HHHHHHHHHHHHHHHH-HcCCCCCCCe-EEEecCCcCCHHHHHHHHhHhCCc-eEeec--CCChhHHHHHH
Q 011357 349 DPPSEV---RALVEGQFLSMRGHAE-RFGLPSPPRR-IIATGGASANQTILSCLASIYGCD-IYTVQ--RPDSASLGAAL 420 (488)
Q Consensus 349 ~~~~~~---rAvlEgia~~~r~~~~-~l~~g~~~~~-i~~~GGga~s~~~~Qi~Advlg~p-V~~~~--~~e~~alGaA~ 420 (488)
...++. +..+|-+...+-..+. .. + .++ |.++||.+-|-..++-+++..+.. |.++. ..++.++|||+
T Consensus 134 ~~~dlAa~~Q~~~E~~v~~~~~~~~~~~--g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~ 209 (360)
T PF02543_consen 134 RHADLAASAQKVLEEIVLHLVRHLLERT--G--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAAL 209 (360)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHH--T----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--C--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHH
Confidence 445555 5666666655543332 22 2 456 999999999999999999997754 77765 46788999999
Q ss_pred HHHhc
Q 011357 421 RAAHG 425 (488)
Q Consensus 421 ~A~~~ 425 (488)
.+...
T Consensus 210 ~~~~~ 214 (360)
T PF02543_consen 210 YAWHE 214 (360)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99976
No 76
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=1.8 Score=46.04 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHH-HHHHhHhCCceEeec--CCChhHHHHHHHHHhc
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTIL-SCLASIYGCDIYTVQ--RPDSASLGAALRAAHG 425 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~-Qi~Advlg~pV~~~~--~~e~~alGaA~~A~~~ 425 (488)
+-+.-+++.+|-+...+...+..-. ...+|.++||.+.|-.++ +++...++..|.+.+ ...+.|+|||+.+..-
T Consensus 260 diAasaQ~~lE~l~l~~~~~~~~~~---g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~ 336 (555)
T COG2192 260 DIAASAQAYLEELVLEMLRYLREET---GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKRE 336 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHHHHH
Confidence 4455567889999988887776542 257899999999999999 999999999998876 5678899999999865
No 77
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=85.76 E-value=1.1 Score=44.98 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeec
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ 409 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~ 409 (488)
++.++.+++.+.++-.+-+.++...+...+++|.++||.+.|..+++.+.+.+ |.+|.+++
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 46789988888888888777776543235678999999999999999999887 66777654
No 78
>PRK00976 hypothetical protein; Provisional
Probab=85.20 E-value=3.8 Score=41.23 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCH--HHHHHHHhHhCCceEeecCCChhHHHHHHHHHhc
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQ--TILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~--~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
...++...+.++..+...+-.+ +++.|++.||.++.+ .+.+.+.+.+..++.. -..+++++|||++|..-
T Consensus 241 ~~aid~~~~~LA~~IAnLi~ll----DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~-LG~dAGaiGAA~iA~~i 312 (326)
T PRK00976 241 KLAIDTLALFVAMEIASLLLLN----PEDNVVLAGSVGEMDEPDVSERIKELLDKKVLV-LGKESAAIGLALIARDI 312 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCEEEEcCccccCchhHHHHHHHHHhcccccc-cCCchHHHHHHHHHHHH
Confidence 4456677777777777666665 478899999989876 4555555555545433 35689999999998764
No 79
>PLN02902 pantothenate kinase
Probab=85.04 E-value=21 Score=40.58 Aligned_cols=168 Identities=13% Similarity=-0.001 Sum_probs=94.9
Q ss_pred cEEEEeccccccccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHh-cCccHHHHHHHHhcCCCCCCCe
Q 011357 228 DLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRC-AEKSWDVFNKYLQQTPPLNGGK 306 (488)
Q Consensus 228 ~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~-~~~~~~~l~~~a~~~~~g~~gl 306 (488)
.+.+++||+.-+..+.. ++.|--.+++.-||..+-=+...+ +..+|+++.+++.+-..-.-.
T Consensus 216 yLLVNIGSGVSilkV~~----------------~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vD- 278 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDG----------------DGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAID- 278 (876)
T ss_pred eEEEEcCCceEEEEEec----------------CCcEEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccC-
Confidence 36788888865544331 223333333333443333333333 347899999998753321112
Q ss_pred EeEeccCCC-CCC-----CC-CCccee-eeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 011357 307 MGFYYKEHE-ILP-----PL-PVGFHR-YILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPP 378 (488)
Q Consensus 307 ~~lP~l~G~-r~P-----~~-a~G~~~-l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~ 378 (488)
+.+-.+.|. ..| .+ ....|| +.... ....+.+++|++|+++--|++++-++.-...+...+
T Consensus 279 llVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~-----------~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~~~i 347 (876)
T PLN02902 279 MLVGDIYGGMDYSKIGLSASTIASSFGKVISEN-----------KELSDYRPEDISLSLLRMISYNIGQISYLNALRFGL 347 (876)
T ss_pred eeeccccCCCCcCCCCCCcchhhhccCcccccc-----------cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334555553 212 12 122343 11100 001235799999999999999988865443333468
Q ss_pred CeEEEecCCc-CCHHHHHHHHhHhC------CceEeec-CCChhHHHHHHHHH
Q 011357 379 RRIIATGGAS-ANQTILSCLASIYG------CDIYTVQ-RPDSASLGAALRAA 423 (488)
Q Consensus 379 ~~i~~~GGga-~s~~~~Qi~Advlg------~pV~~~~-~~e~~alGaA~~A~ 423 (488)
++|+++|..- .++.-|+.++-+++ +....+. ..-.+|+||.+...
T Consensus 348 krIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 348 KRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred CEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCC
Confidence 8999999986 55777888886654 2333333 34478999986543
No 80
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=84.68 E-value=2.2 Score=46.25 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeec----CCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ----RPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~----~~e~~alGaA~~ 421 (488)
+..++.+++.+.++-.+...++...+...+++|.++||.+.|..+++.+.+.+ +.+|.+++ ...+.++|+|..
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~ 296 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTERALAHTGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGL 296 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHH
Confidence 45788999988888888887776543234678999999999999999999775 77887764 345667777765
Q ss_pred HH
Q 011357 422 AA 423 (488)
Q Consensus 422 A~ 423 (488)
..
T Consensus 297 ~~ 298 (535)
T PRK09605 297 LM 298 (535)
T ss_pred HH
Confidence 43
No 81
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=84.63 E-value=3 Score=42.11 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh----CCceEeecC----CChhHHHHHHHHH-
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY----GCDIYTVQR----PDSASLGAALRAA- 423 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl----g~pV~~~~~----~e~~alGaA~~A~- 423 (488)
-+.+.+|+++-.+...+... .+++.|+++|-.++++.+..-+.+.| +.+|..... ...+|.|+|++|-
T Consensus 239 a~ea~~E~i~k~V~~l~~~~---~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLASV---PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHHHhccc---CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhh
Confidence 57788888887777544333 25688999999999988876665555 446655443 2348999999985
Q ss_pred hccccccCCCCCCHH
Q 011357 424 HGYLCSKKGSFVPIS 438 (488)
Q Consensus 424 ~~~~~~~~G~~~~~~ 438 (488)
.+ -|.|+.+=
T Consensus 316 la-----GG~~~~lv 325 (343)
T PF07318_consen 316 LA-----GGRYKELV 325 (343)
T ss_pred hh-----cccHHHHH
Confidence 34 46665443
No 82
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=84.34 E-value=6.4 Score=40.09 Aligned_cols=166 Identities=12% Similarity=0.014 Sum_probs=87.5
Q ss_pred cEEEEeccccccccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHh-cCccHHHHHHHHhcCCCCCCCe
Q 011357 228 DLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRC-AEKSWDVFNKYLQQTPPLNGGK 306 (488)
Q Consensus 228 ~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~-~~~~~~~l~~~a~~~~~g~~gl 306 (488)
-+.+++||+..+..+.. ++.|--.+.+.-||..+-=+...+ +..+|+++.++|++=..-.-.+
T Consensus 158 yllvniGsGvSi~~v~~----------------~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDl 221 (341)
T PF03630_consen 158 YLLVNIGSGVSILKVEG----------------PNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDL 221 (341)
T ss_dssp EEEEEESSSEEEEEEEE----------------TTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSE
T ss_pred EEEEEcCCceEEEEEeC----------------CCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCc
Confidence 46678887755433321 344444444444444343333333 4468999999987532211122
Q ss_pred EeEeccCCCCC-----CCCC-Cccee-eeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 011357 307 MGFYYKEHEIL-----PPLP-VGFHR-YILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPR 379 (488)
Q Consensus 307 ~~lP~l~G~r~-----P~~a-~G~~~-l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~ 379 (488)
.+-.+.|... |.+. ...|| +.... ......+++|++|+++--|+..+-++.-...+-..++
T Consensus 222 -lV~DIyg~~y~~~~L~~~~~AssFGk~~~~~-----------~~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~~~ 289 (341)
T PF03630_consen 222 -LVGDIYGGDYNKIGLPGDLTASSFGKVQSKA-----------KRKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHGVK 289 (341)
T ss_dssp -EHHHHHSS-BGGGTB-TTSEEETTCCGGSHH-----------HH-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred -eeeeccCCCcccCCCCHHHHHhhhhhhhhcc-----------cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2334444431 2222 22343 21100 0001347999999999999999888655433223578
Q ss_pred eEEEecCCcC-CHHHHHHHH---hHhC---CceEeec-CCChhHHHHHHH
Q 011357 380 RIIATGGASA-NQTILSCLA---SIYG---CDIYTVQ-RPDSASLGAALR 421 (488)
Q Consensus 380 ~i~~~GGga~-s~~~~Qi~A---dvlg---~pV~~~~-~~e~~alGaA~~ 421 (488)
+|+++|...+ ++..++.++ +-+. .....++ ..-.+|+||.+.
T Consensus 290 ~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 290 RIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred EEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 9999999985 578889898 4442 2333344 555889999874
No 83
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=79.50 E-value=5.2 Score=39.18 Aligned_cols=62 Identities=8% Similarity=0.126 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhC--CceEeec-CCCh
Q 011357 352 SEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYG--CDIYTVQ-RPDS 413 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg--~pV~~~~-~~e~ 413 (488)
.-.+-++++.+|++..-+-.+.. ..+++.|+++||.|++..++..+.+-+. .||.+.+ ..|.
T Consensus 269 ~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~El 335 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDEL 335 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHH
Confidence 56677888999999888877664 4578999999999999999999999877 4887754 4443
No 84
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=77.77 E-value=9.9 Score=37.43 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CC--CCCeEEEecCCcCC-HHHHHHHHhHhCCc-----eEeecCCChhHHHHHHH
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL-PS--PPRRIIATGGASAN-QTILSCLASIYGCD-----IYTVQRPDSASLGAALR 421 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~-g~--~~~~i~~~GGga~s-~~~~Qi~Advlg~p-----V~~~~~~e~~alGaA~~ 421 (488)
+.++|=.=|-++-.++.++.++.. .+ ..=.|++.||.-+| +.|++=+-+-+-.. ++.....+.+|+|||++
T Consensus 234 ~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~l 313 (336)
T KOG1794|consen 234 AEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAIL 313 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHH
Confidence 456666667777788888887753 22 23469999999755 77777655544333 66667788999999999
Q ss_pred HHhc
Q 011357 422 AAHG 425 (488)
Q Consensus 422 A~~~ 425 (488)
|+.-
T Consensus 314 aa~~ 317 (336)
T KOG1794|consen 314 AASL 317 (336)
T ss_pred hhhh
Confidence 9986
No 85
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=77.10 E-value=2.2 Score=41.24 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceee
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVY 36 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~ 36 (488)
.||++++++++++.++ .++.+|.+|++|+|++++++
T Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~~~v~ 69 (248)
T TIGR00241 32 PVIEETARAILEALKEAGIGLEPIDKIVATGYGRHKVG 69 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCChhheeEEEEECCCccccc
Confidence 3899999999887654 56788999999999999986
No 86
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.57 E-value=5.2 Score=42.53 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCCeEEEecCCcCCHHHHHHHHhHhCC-ceEeecCCChhHHHHHHHHHhc
Q 011357 376 SPPRRIIATGGASANQTILSCLASIYGC-DIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 376 ~~~~~i~~~GGga~s~~~~Qi~Advlg~-pV~~~~~~e~~alGaA~~A~~~ 425 (488)
.++++|.+.||.++-|-..+.+.++||+ |=.-+++.|+.++|||+.+++=
T Consensus 352 ~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl 402 (640)
T KOG0102|consen 352 SDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVL 402 (640)
T ss_pred hhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchh
Confidence 5789999999999999999999999997 6677788999999999988865
No 87
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.83 E-value=10 Score=38.10 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC---CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecC
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL---PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR 410 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~---g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~ 410 (488)
..+.++-+++-+.-.+++.++-+-. ...++.|+++||+++-.-+-+.+.+-++.|+.+.++
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 4568899999999999999997653 357899999999999999999999999999998764
No 88
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.74 E-value=10 Score=41.71 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCC---ceE----eecCCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC---DIY----TVQRPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~---pV~----~~~~~e~~alGaA~~ 421 (488)
+++.+..+...+++-.+..++..+.+...+++|.++||...|..+++-+++.+.. .+. ++....+-++|=|++
T Consensus 665 ~~~~iA~~fh~~la~~~~e~~~~~a~~~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~ 744 (750)
T COG0068 665 EPEKIATKFHNALAEGFAELAVELAKKYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVA 744 (750)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHH
Confidence 6777888888888887777777766544578999999999999999999999985 333 333445668898888
Q ss_pred HH
Q 011357 422 AA 423 (488)
Q Consensus 422 A~ 423 (488)
++
T Consensus 745 ~~ 746 (750)
T COG0068 745 AA 746 (750)
T ss_pred HH
Confidence 73
No 89
>PRK03011 butyrate kinase; Provisional
Probab=69.92 E-value=18 Score=37.09 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhC--CceEeecC-CC--hhHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYG--CDIYTVQR-PD--SASLGA 418 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg--~pV~~~~~-~e--~~alGa 418 (488)
...+.+++-.++.+...+-.+.. +..++.|+++||.+.++.+++.+.+-+. .||.+... .| +.+.||
T Consensus 268 ~~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA 341 (358)
T PRK03011 268 EKAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGA 341 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHH
Confidence 34566777777777776665542 2357999999999999888877766655 36766543 22 445553
No 90
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=69.33 E-value=1.1e+02 Score=30.51 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC-HHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhc
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s-~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
....+++-.+..+...++.+.......+|.+.||.+++ +.|..++=.-+..|. ......||.++|...
T Consensus 224 ~A~~Il~~aa~~i~~~~~~l~~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~-----~~D~~~GA~~~A~~~ 292 (301)
T COG2971 224 VAIRILKEAAAYIATLLEALSIFNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP-----IGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceEEEeccccccchhhHHHHHHHhcCCc-----cccHHHHHHHHHHHh
Confidence 45677888888889999988532345789999999977 888887777776665 223567888888765
No 91
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=62.38 E-value=8.7 Score=37.10 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=33.5
Q ss_pred EEEecCCc-CCHHHHHHHHhHhC-------CceEeecCCChhHHHHHHHHHhc
Q 011357 381 IIATGGAS-ANQTILSCLASIYG-------CDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 381 i~~~GGga-~s~~~~Qi~Advlg-------~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
|-+.|+.- +.|.+.+.+.+.+. ++|......+++.+|||++|+++
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~dgsg~GAAi~AA~a 241 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSEDGSGVGAAIAAAVA 241 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-SSTHHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEecCchHHHHHHHHHHh
Confidence 55555553 78888877776653 47777778899999999999986
No 92
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=62.35 E-value=19 Score=40.10 Aligned_cols=82 Identities=16% Similarity=0.066 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC--HHHH-----HH-------HHhHhCCceEeecCCChhHHHHH
Q 011357 354 VRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN--QTIL-----SC-------LASIYGCDIYTVQRPDSASLGAA 419 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s--~~~~-----Qi-------~Advlg~pV~~~~~~e~~alGaA 419 (488)
+.-..+-++..+..+.-.+. +++.|++.||.+.. +.+. +- ..-+-+.||.++..++.+.+|||
T Consensus 249 ~~~~~~~lg~~~~nl~~~~~---~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa 325 (638)
T PRK14101 249 VECFCAILGTFAGNLALTLG---ALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLGVS 325 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHHHH
Confidence 33333334444444333331 36778888888744 3332 22 22335679999999999999999
Q ss_pred HHHHhccccccCCCCCCHH
Q 011357 420 LRAAHGYLCSKKGSFVPIS 438 (488)
Q Consensus 420 ~~A~~~~~~~~~G~~~~~~ 438 (488)
..+...++.++-|...++.
T Consensus 326 ~~~~~~~~~~~~~~~~~l~ 344 (638)
T PRK14101 326 AILAEQLSNRTGGASSAVF 344 (638)
T ss_pred HHHHHHhccccCCchHHHH
Confidence 9999987666544444443
No 93
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=61.93 E-value=11 Score=37.74 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcC-C--CCCCCe-EEEecCCcCCHHHHHHHHhHhCCceEeecCC
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFG-L--PSPPRR-IIATGGASANQTILSCLASIYGCDIYTVQRP 411 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~-~--g~~~~~-i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~ 411 (488)
-.+-++-.+++|.-.+|..++... + .--+++ ++++||||.-.-+-+.+++-++.||.+.+.+
T Consensus 252 v~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~p 317 (342)
T COG1077 252 IAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDP 317 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCCh
Confidence 345566667777778888887643 1 112344 9999999988888899999999999997754
No 94
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=61.37 E-value=17 Score=38.47 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHcCCCCCCCeEEEecCCc--CCHHHHHHHHhHhC------CceEeecCCChh
Q 011357 351 PSEVRALVEGQFLSMR--------GHAERFGLPSPPRRIIATGGAS--ANQTILSCLASIYG------CDIYTVQRPDSA 414 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r--------~~~~~l~~g~~~~~i~~~GGga--~s~~~~Qi~Advlg------~pV~~~~~~e~~ 414 (488)
..+++.+++.|+=.-. .++..+......+.++..+|.- ..|.+.|++...+. +.|.+...++.+
T Consensus 377 r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~~~~v~i~~s~dgS 456 (474)
T KOG1369|consen 377 RKLVREVCDVVSRRAARLAAAGIAAILNKTGELSRKRVTVGVDGSLYKNHPFFREYLKEALRELLGPSIHVKLVLSEDGS 456 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCceEEEeccchhHcCchHHHHHHHHHHHHhCCCceEEEEECCCCc
Confidence 4678888888764333 3333333211123344444443 67888888777665 678888889999
Q ss_pred HHHHHHHHHhc
Q 011357 415 SLGAALRAAHG 425 (488)
Q Consensus 415 alGaA~~A~~~ 425 (488)
.+|||++|+++
T Consensus 457 g~GAAL~Aav~ 467 (474)
T KOG1369|consen 457 GRGAALIAAVA 467 (474)
T ss_pred cccHHHHHHHH
Confidence 99999999998
No 95
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=59.20 E-value=24 Score=39.26 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=40.7
Q ss_pred CCCeEEEecCCcCCHHHHHHHHhHhCCc-e-EeecCCChhHHHHHHHHHh
Q 011357 377 PPRRIIATGGASANQTILSCLASIYGCD-I-YTVQRPDSASLGAALRAAH 424 (488)
Q Consensus 377 ~~~~i~~~GGga~s~~~~Qi~Advlg~p-V-~~~~~~e~~alGaA~~A~~ 424 (488)
.|+.|++.||++|-|.+..++.+..+.. + .-++..|++++||++-|+.
T Consensus 364 eIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~ 413 (902)
T KOG0104|consen 364 EINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAH 413 (902)
T ss_pred hhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHh
Confidence 5789999999999999999999998863 3 2346789999999999885
No 96
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=58.94 E-value=50 Score=32.69 Aligned_cols=50 Identities=12% Similarity=-0.076 Sum_probs=31.3
Q ss_pred ccHHHHHHcCCCCCCeEEeccChhHHhhhcc---CC--CCCCcEEEEeccccccccccCC
Q 011357 191 IAPYFVERFHFNKNCLVVQWSGDNPNSLAGL---TL--STSGDLAISLGTSDTVFGITDD 245 (488)
Q Consensus 191 v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~---g~--~~~g~~~~s~GTs~~~~~~~~~ 245 (488)
+.+.+.+++| +||+ -..|..++++|- |. ..+..+++++||+-....+.+.
T Consensus 88 l~~~l~~~~~----~pV~-ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG~giv~~G 142 (303)
T PRK13310 88 LRADLSARLG----RDVR-LDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVFNG 142 (303)
T ss_pred HHHHHHHHHC----CCeE-EeccHhHHHHHHhhhccccCCCcEEEEEecCceEEEEEECC
Confidence 4445556664 4544 467777777652 22 2356678999998776666654
No 97
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=56.83 E-value=27 Score=32.64 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCC-ChhHHHHHHHHH
Q 011357 354 VRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRP-DSASLGAALRAA 423 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~-e~~alGaA~~A~ 423 (488)
++-|+|=+|--.+.+++ +.+++.+++.||.+.-+-+-.++-.-|+.+|+.+..+ -.+.||.|+..+
T Consensus 207 v~PV~eKMAeIv~~hie----~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg~ 273 (277)
T COG4820 207 VKPVYEKMAEIVARHIE----GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSGR 273 (277)
T ss_pred hhHHHHHHHHHHHHHhc----cCCCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhccc
Confidence 45677777777777766 3467899999999999999999999999999988744 467888776443
No 98
>PRK09557 fructokinase; Reviewed
Probab=56.06 E-value=36 Score=33.68 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---------CCceEeec-CCChhHHHHHHHH
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---------GCDIYTVQ-RPDSASLGAALRA 422 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---------g~pV~~~~-~~e~~alGaA~~A 422 (488)
+++-..+.++..+...+..+ .++.|++.||.++.+.+...+-..+ ..+|.... ..+++++|||++.
T Consensus 224 ~l~~~~~~La~~l~~l~~~l----dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 224 AFRRYEDRLAKSLAHVINIL----DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 34444445555555555444 4688888888876654443222222 22344433 3567788999865
No 99
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=55.44 E-value=33 Score=35.95 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecC
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR 410 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~ 410 (488)
...++++|=+|=+..-++.-++.... ......|+++||+++=+-....-.++|++||++..+
T Consensus 291 ~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 291 ELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 34567777777777777777776654 445688999999999999999999999999998655
No 100
>PRK13327 pantothenate kinase; Reviewed
Probab=54.55 E-value=2.1e+02 Score=27.64 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhc
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
|...|...++-|++..+...++.+.+ +.+ -+|+++||.++ .+++.+. +... .++-...|-+.+|..+
T Consensus 171 T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~-~~vilTGG~A~------~l~~~l~-~~~~--~p~LvL~GL~~~a~~~ 239 (242)
T PRK13327 171 TDDALTSGCDGAAVALIERSLQHAHRSLGQP-VRLLVHGGGAP------PLLPLLP-DAEF--RPALVLDGLATWATAA 239 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH------HHHHhCC-CCEE--ccCcHHHHHHHHHHhc
Confidence 78889999999999998888888764 322 36999999864 4555553 2332 4667888998888765
No 101
>PTZ00297 pantothenate kinase; Provisional
Probab=51.97 E-value=45 Score=40.76 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecC-CcCCHHHHHHHHhHhC------CceEeec-CCChhHHHHH
Q 011357 348 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGG-ASANQTILSCLASIYG------CDIYTVQ-RPDSASLGAA 419 (488)
Q Consensus 348 ~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GG-ga~s~~~~Qi~Advlg------~pV~~~~-~~e~~alGaA 419 (488)
.+++|+.|+++--|.+++-++.-...+...+++|+.+|+ ...++..|+.++..++ +.-..++ ..-.+|+||+
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~ 1441 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCA 1441 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhh
Confidence 468999999999999998876543333456899999999 4678999999998873 3344444 4457899998
Q ss_pred HHH
Q 011357 420 LRA 422 (488)
Q Consensus 420 ~~A 422 (488)
+..
T Consensus 1442 ~~~ 1444 (1452)
T PTZ00297 1442 TLD 1444 (1452)
T ss_pred hcC
Confidence 853
No 102
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=51.53 E-value=70 Score=31.43 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHH-HHHHHHhHhC------CceEeec-CCChhHHHHHHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQT-ILSCLASIYG------CDIYTVQ-RPDSASLGAALRAA 423 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~-~~Qi~Advlg------~pV~~~~-~~e~~alGaA~~A~ 423 (488)
++++-....++..+..++..+ .++.|++.|+.+..+. +.++...+-. .+|.... ..+++++|||.++.
T Consensus 212 ~~~~~~~~~la~~l~~l~~~~----dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLKATL----DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 344444455555555555544 4688888888765544 3334333321 2333333 35677889998864
No 103
>PTZ00107 hexokinase; Provisional
Probab=50.76 E-value=42 Score=35.74 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=40.4
Q ss_pred CcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCC----C-CcEEEEecccccccccc
Q 011357 185 HAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLST----S-GDLAISLGTSDTVFGIT 243 (488)
Q Consensus 185 ~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~----~-g~~~~s~GTs~~~~~~~ 243 (488)
|.-++.+-.++-++-|++ +.|++-.-|+.+..++..-.. + -.+.+++||++..+.+.
T Consensus 193 G~DV~~lL~~Al~r~~l~--v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 193 GKDVGELLNDAFKRNNVP--ANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred CchHHHHHHHHHHHcCCC--ceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeee
Confidence 444555555666667874 778889999998888765544 3 35679999998765555
No 104
>PRK12408 glucokinase; Provisional
Probab=48.13 E-value=60 Score=32.93 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCe-EEEecCCcCC--HHHHH---HHH--------hHh-CCceEeecCCChhHHH
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRR-IIATGGASAN--QTILS---CLA--------SIY-GCDIYTVQRPDSASLG 417 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~-i~~~GGga~s--~~~~Q---i~A--------dvl-g~pV~~~~~~e~~alG 417 (488)
+++-..+.++..+..+.-.+ .++. |++.||.+.+ +.+.. +.+ ..+ ..||+.....+++.+|
T Consensus 251 ~~~~~~~~La~~i~nl~~~l----dPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~G 326 (336)
T PRK12408 251 ALQVFCGFLGSVVGDMALAY----GARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLG 326 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHH----CCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHH
Confidence 45555555555555555554 3577 9998988743 55443 111 122 5678887766889999
Q ss_pred HHHHHH
Q 011357 418 AALRAA 423 (488)
Q Consensus 418 aA~~A~ 423 (488)
||.++.
T Consensus 327 Aa~~~~ 332 (336)
T PRK12408 327 AASWYL 332 (336)
T ss_pred HHHHHH
Confidence 986654
No 105
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=47.99 E-value=14 Score=36.76 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecC--CChhHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR--PDSASLGAAL 420 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~--~e~~alGaA~ 420 (488)
+..++.+++++-+...+.+.++.+.. +..++...+.+.|.-.+++..-+|+.+|.+..++.. .-..|+|+++
T Consensus 208 ~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~g~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 208 SVEEAAEGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGAGPLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEE-----------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56778888888888888888877631 444555444443334478999999999998665443 3455666665
No 106
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=45.43 E-value=53 Score=34.26 Aligned_cols=50 Identities=6% Similarity=0.023 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCc-CCHHHHHHHHhHhC
Q 011357 353 EVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS-ANQTILSCLASIYG 402 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga-~s~~~~Qi~Advlg 402 (488)
-.+=++|..+|.++..+-.|.. ...++.|+++||.. +|+.+++.+.+-+.
T Consensus 297 ~A~lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 297 RAKLALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3455788899999988876642 23689999999998 99999988877654
No 107
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=45.20 E-value=56 Score=34.05 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCc-CCHHHHHHHHhHhC
Q 011357 354 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS-ANQTILSCLASIYG 402 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga-~s~~~~Qi~Advlg 402 (488)
.+-++|..+|.++..+-.+.. +..++.|+++||.. +|+.+++.+.+-++
T Consensus 302 A~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 302 AQLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 455788999999998887653 44589999999999 89999888777654
No 108
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=44.55 E-value=61 Score=32.94 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHHHHHH----HHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhC
Q 011357 349 DPPSEVRALVEGQFLSMRG----HAERFGL-PSPPRRIIATGGASANQTILSCLASIYG 402 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~----~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg 402 (488)
+.+++...+.+.++..+.. .++.+.. ...++.++++||.|+|..+...+.+..+
T Consensus 272 ~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 272 EIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHH
Confidence 5677777777766655544 3333322 4567899999999999999988877654
No 109
>PRK00292 glk glucokinase; Provisional
Probab=41.60 E-value=77 Score=31.61 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCC-eEEEecCCcC-C-HHHHH-----HH------HhH-hCCceEeecCCChhHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPR-RIIATGGASA-N-QTILS-----CL------ASI-YGCDIYTVQRPDSASL 416 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~-~i~~~GGga~-s-~~~~Q-----i~------Adv-lg~pV~~~~~~e~~al 416 (488)
.++.-..+.++..+...+..+ .++ .|++.||.+. + +.+.. -+ .+. -..||+.....++..+
T Consensus 232 ~~~~~~~~~lg~~i~~l~~~~----~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~ 307 (316)
T PRK00292 232 RTLSLFCVILGRVAGNLALTL----GARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLL 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHH
Confidence 345555555566555555555 356 7889888873 3 33322 22 223 2567777667789999
Q ss_pred HHHHHHHh
Q 011357 417 GAALRAAH 424 (488)
Q Consensus 417 GaA~~A~~ 424 (488)
|||.++..
T Consensus 308 GAa~~~~~ 315 (316)
T PRK00292 308 GAGAYLRQ 315 (316)
T ss_pred HHHHHHhc
Confidence 99988753
No 110
>PRK09698 D-allose kinase; Provisional
Probab=41.07 E-value=1.4e+02 Score=29.34 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCH-H----HHHHHHhHhC-------CceEeec-CCChhHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQ-T----ILSCLASIYG-------CDIYTVQ-RPDSASLGA 418 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~-~----~~Qi~Advlg-------~pV~~~~-~~e~~alGa 418 (488)
++++...+.++..+...+..+ .++.|++.|+.++.. . +.+.+.+.+- .+|.... ..+++++||
T Consensus 215 ~~~~~~~~~la~~l~~li~~l----dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GA 290 (302)
T PRK09698 215 PFIQSLLENLARAIATSINLF----DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGA 290 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhH
Confidence 466777788888888877766 468888888877653 2 2223332221 2244433 456778999
Q ss_pred HHHHHh
Q 011357 419 ALRAAH 424 (488)
Q Consensus 419 A~~A~~ 424 (488)
|.++..
T Consensus 291 a~~~~~ 296 (302)
T PRK09698 291 AILAHQ 296 (302)
T ss_pred HHHHHH
Confidence 998764
No 111
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=39.17 E-value=74 Score=31.62 Aligned_cols=50 Identities=20% Similarity=0.098 Sum_probs=31.4
Q ss_pred ccHHHHHHcCCCCCCeEEeccChhHHhhhc-----cCCCCCCcEEEEeccccccccccCC
Q 011357 191 IAPYFVERFHFNKNCLVVQWSGDNPNSLAG-----LTLSTSGDLAISLGTSDTVFGITDD 245 (488)
Q Consensus 191 v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg-----~g~~~~g~~~~s~GTs~~~~~~~~~ 245 (488)
+.+.+.+++| +||. -..|..++++| .+.-.+..+++++||+.....+.+.
T Consensus 89 l~~~l~~~~~----~pv~-v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG~giv~~G 143 (318)
T TIGR00744 89 LKEKVEARVG----LPVV-VENDANAAALGEYKKGAGKGARDVICITLGTGLGGGIIING 143 (318)
T ss_pred HHHHHHHHHC----CCEE-EechHHHHHHHHHHhcccCCCCcEEEEEeCCccEEEEEECC
Confidence 3344455555 4544 56788888774 3333456788999998776666553
No 112
>PLN02405 hexokinase
Probab=37.61 E-value=78 Score=34.04 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=40.5
Q ss_pred CcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCC-cEEEEecccccccccc
Q 011357 185 HAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSG-DLAISLGTSDTVFGIT 243 (488)
Q Consensus 185 ~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g-~~~~s~GTs~~~~~~~ 243 (488)
|+-++.+-.++-++-||+ +.|++=.-|+....++..-..+. .+.+++||++..+.+-
T Consensus 204 G~DVv~lL~~Al~r~~l~--v~v~AlvNDTVGTL~a~aY~~~~~~iG~IlGTGtNacY~E 261 (497)
T PLN02405 204 GQDVVGELTKAMERVGLD--MRVSALVNDTIGTLAGGRYYNPDVVAAVILGTGTNAAYVE 261 (497)
T ss_pred CchHHHHHHHHHHHcCCC--ceEEEEEecCHHHHHHhhcCCCCceEEEEEeCCeeeEEEe
Confidence 444555555566666885 88899999999888876554543 4679999998765544
No 113
>PLN02914 hexokinase
Probab=37.52 E-value=82 Score=33.81 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=39.5
Q ss_pred CcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCC-cEEEEecccccccccc
Q 011357 185 HAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSG-DLAISLGTSDTVFGIT 243 (488)
Q Consensus 185 ~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g-~~~~s~GTs~~~~~~~ 243 (488)
|+-++.+-.++-++-|++ +.|++=.-|+....++..-.+++ .+.+++||++..+.+-
T Consensus 204 G~DVv~lL~~Al~r~~l~--v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E 261 (490)
T PLN02914 204 GKDVVACLNEAMERQGLD--MRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVE 261 (490)
T ss_pred CchHHHHHHHHHHHcCCC--ceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEe
Confidence 333444445555666875 88889999999888876555553 5679999998765544
No 114
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=37.47 E-value=48 Score=32.50 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh--CCceEeec
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY--GCDIYTVQ 409 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl--g~pV~~~~ 409 (488)
.++.+++.+.++-.+...+....+-...++|.++||.+.|..+++.+.+.. +.++..+.
T Consensus 195 ~~iA~s~q~~~~~~l~~~~~~a~~~~~~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 195 ADIAASFQEAIADHLAKKAPRALEKPRAKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence 445555566554444443332211135789999999999999998876544 66666544
No 115
>PLN02596 hexokinase-like
Probab=37.11 E-value=1e+02 Score=33.06 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=36.8
Q ss_pred cccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCC-cEEEEecccccccccc
Q 011357 190 CIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSG-DLAISLGTSDTVFGIT 243 (488)
Q Consensus 190 ~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g-~~~~s~GTs~~~~~~~ 243 (488)
.+-.++-++-|++ +.|++=.-|+...+++..-.++. .+-+++||++..+.+-
T Consensus 209 ~lL~~Al~r~~l~--v~v~AivNDTVgTL~a~aY~~~~~~iG~I~GTGtNacY~E 261 (490)
T PLN02596 209 NDINRALEKHGLK--IRVFALVDDTIGNLAGGRYYNKDTVAAVTLGMGTNAAYVE 261 (490)
T ss_pred HHHHHHHHhcCCC--ceEEEEEEcCHHHHHhhhcCCCCeEEEEEEecccceEEEE
Confidence 3345555556874 88999999999888876655554 4568999998765544
No 116
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=36.58 E-value=14 Score=37.98 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=34.1
Q ss_pred CCCeEEEecCCcCCHHHHHHHHhHhCC--c------eEee--c-CCChhHHHHHHHHHhc
Q 011357 377 PPRRIIATGGASANQTILSCLASIYGC--D------IYTV--Q-RPDSASLGAALRAAHG 425 (488)
Q Consensus 377 ~~~~i~~~GGga~s~~~~Qi~Advlg~--p------V~~~--~-~~e~~alGaA~~A~~~ 425 (488)
-.++|+++||+|+-+-+.+.+.+-++. | +.+. . ...++-+|++++|...
T Consensus 289 l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~ 348 (371)
T cd00012 289 LYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLS 348 (371)
T ss_pred HHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCch
Confidence 357799999999999999999888873 2 2222 2 2334555888887643
No 117
>PRK13329 pantothenate kinase; Reviewed
Probab=35.56 E-value=1.8e+02 Score=28.25 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHh
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAH 424 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~ 424 (488)
|...|...++.|++..+...++.+++ +.+ -.|+++||.+ ++++..+..++.. .++-...|-..++..
T Consensus 178 T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~-~~vilTGGda------~~l~~~l~~~~~~--~~~LvL~GL~~i~~~ 246 (249)
T PRK13329 178 TSDALTSGGTQAIAGAVERMFRHLAQHCGAE-PECLLTGGAA------WKLAPSLTVPFEL--VDNLVLDGLLVIAAR 246 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCH------HHHHhhcCCCCEE--CCCcHHHHHHHHHhh
Confidence 78889999999999999999998864 322 3799999985 4577778888776 356777788777653
No 118
>PRK13328 pantothenate kinase; Reviewed
Probab=35.13 E-value=1.7e+02 Score=28.35 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHh
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAH 424 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~ 424 (488)
|...|...++-|++..+...++.+++ +. .-+|+++||.+ ++++..+..+... .++-...|-+.++..
T Consensus 185 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~-~~~vi~TGGda------~~l~~~l~~~~~~--~p~LvL~GL~~i~~~ 253 (255)
T PRK13328 185 TPDAISAGCLAAQAGLIERAWRDLAARWQA-PVRLVLSGGAA------DAVAPALTVPHTR--HDNLVLLGLALIAAA 253 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCH------HHHHhhCCCCCEE--CCCcHHHHHHHHHhh
Confidence 78889999999999999998888864 32 24799999985 3567777777765 356788888777653
No 119
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=34.70 E-value=57 Score=35.24 Aligned_cols=76 Identities=12% Similarity=0.087 Sum_probs=48.6
Q ss_pred CCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhhHH
Q 011357 386 GASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVS 465 (488)
Q Consensus 386 Gga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~ 465 (488)
+.+|-.++.|++-|++.=.+.. ....++.|||-++++. +|.|...+-.. . .+ .+-.|-|++.. +
T Consensus 101 e~tRYqfflQlKqDll~GRL~C-p~~~AaeLaAl~lQsE------LGDYn~~~Ht~-~-yV-SefRf~p~Qte------~ 164 (616)
T KOG3530|consen 101 ENTRYQFFLQLKQDLLSGRLYC-PFETAAELAALILQSE------LGDYNEEEHTG-G-YV-SEFRFLPNQTE------E 164 (616)
T ss_pred hhhHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHHH------hcCCChhhccc-c-ce-eeeEecccccH------H
Confidence 3466678999999999876665 3466888899888887 67775332211 1 22 23357798754 3
Q ss_pred HHHHHHHHHHHH
Q 011357 466 KYAVMMKKRLEI 477 (488)
Q Consensus 466 ~Y~~~y~~y~~~ 477 (488)
.=.+.+++|+++
T Consensus 165 LE~~I~e~hK~~ 176 (616)
T KOG3530|consen 165 LEERIFELHKEL 176 (616)
T ss_pred HHHHHHHHHHHh
Confidence 334455666665
No 120
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=33.00 E-value=1.2e+02 Score=30.92 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCC-hhHHHHHHHHH
Q 011357 376 SPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRAA 423 (488)
Q Consensus 376 ~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e-~~alGaA~~A~ 423 (488)
..+++|+++||||+ ++.+.+.+.++.- .+++.++ +=++|-..++-
T Consensus 290 ~~~d~IiL~GGGA~--ll~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 290 NSFDRVIVTGGGAN--IFFDSLSHWYSDV-EKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCCCEEEEECCcHH--HHHHHHHHHcCCe-EEcCChHHHHHHHHHHHHH
Confidence 36789999999996 4678888888864 4445443 44667666654
No 121
>PRK13326 pantothenate kinase; Reviewed
Probab=32.97 E-value=1.7e+02 Score=28.62 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~ 421 (488)
|...|-..++.|.+..+...++.+++ +.+ -.|+++||.+ ++++..+..+... .++-+..|-.++
T Consensus 187 T~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~-~~vv~TGG~a------~~l~~~~~~~~~~--~~~LvL~GL~~i 252 (262)
T PRK13326 187 TSDSVNSGVIYQYKYLIEGVYHDLKRNYDRE-FNLIITGGNS------NLILPLISVDFIF--NLYLTLEGIRIL 252 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCH------HHHHhhCCCCcEE--CcccHHHHHHHH
Confidence 78888899999999999999998874 322 4699999965 4567777777765 356677777655
No 122
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=32.49 E-value=1.8e+02 Score=29.69 Aligned_cols=58 Identities=9% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhC--CceEeecC
Q 011357 353 EVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYG--CDIYTVQR 410 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg--~pV~~~~~ 410 (488)
..+.++|-.++.+...+-.+.. +..++.|+++||.+.++.+++.+.+-+. .||.+.+.
T Consensus 267 ~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 3455666666666655554432 2257889999999988877776666655 59988764
No 123
>PRK07058 acetate kinase; Provisional
Probab=32.31 E-value=94 Score=32.31 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCc-CCHHHHHHHHhHhC
Q 011357 354 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS-ANQTILSCLASIYG 402 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga-~s~~~~Qi~Advlg 402 (488)
.+-++|..+|.++..+-.+.. | .++.|+++||.. +|+.+++.+.+-+.
T Consensus 294 A~lA~d~f~yri~k~IGa~~a~Lg-~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 294 AREALDLFALRIAGEIARLAATLG-GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 556889999999998887653 4 589999999999 88888887777654
No 124
>PRK12379 propionate/acetate kinase; Provisional
Probab=32.30 E-value=1.1e+02 Score=31.95 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCc-CCHHHHHHHHhHhC
Q 011357 353 EVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS-ANQTILSCLASIYG 402 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga-~s~~~~Qi~Advlg 402 (488)
-.+=++|..+|.++..+-.+.. + .++.|+++||.. ++..+++.+.+-|.
T Consensus 292 ~A~lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~L~ 343 (396)
T PRK12379 292 RAQLAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEHLA 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3455788899999988887653 5 689999999998 55666666665543
No 125
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=31.98 E-value=2e+02 Score=28.74 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCC-ceEeecCCC-hhHHHHHH
Q 011357 368 HAERFGLPSPPRRIIATGGASANQTILSCLASIYGC-DIYTVQRPD-SASLGAAL 420 (488)
Q Consensus 368 ~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~-pV~~~~~~e-~~alGaA~ 420 (488)
+...+..+..++.|+++||||. ++.+.+.+.++. .|..++.++ +-|.|=..
T Consensus 264 i~~~~~~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~ 316 (320)
T TIGR03739 264 MMTWIGAPESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQI 316 (320)
T ss_pred HHHhcccCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHH
Confidence 3344433456889999999987 666777777775 344445444 44555433
No 126
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=30.81 E-value=1.6e+02 Score=29.58 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCC---ceEeecCCChh
Q 011357 367 GHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC---DIYTVQRPDSA 414 (488)
Q Consensus 367 ~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~---pV~~~~~~e~~ 414 (488)
.+.+.+.+...+++|+++||||. ++...+-+.++. .+.+++.++-+
T Consensus 262 ~i~~~~~~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfA 310 (318)
T PF06406_consen 262 RILRELGDFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFA 310 (318)
T ss_dssp HHHHHHTTS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGH
T ss_pred HHHHHHhhhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhh
Confidence 34444443235688999999985 777888888874 67777766643
No 127
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=29.37 E-value=77 Score=30.56 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCC
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASAN 390 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s 390 (488)
|...|-..++.|.+..+...++.+++ +. .-+++++||.++.
T Consensus 177 T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~-~~~vi~TGG~a~~ 219 (243)
T TIGR00671 177 TREAVQSGAVYGVLGLIQGLLKDWKKYFKR-KFAVVITGGDGKY 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCchHh
Confidence 88889999999999999999988864 32 2469999998764
No 128
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=28.83 E-value=63 Score=30.71 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCCeEEEecCC-cCCHHHHHHHHhHhC
Q 011357 358 VEGQFLSMRGHAERFGL-PSPPRRIIATGGA-SANQTILSCLASIYG 402 (488)
Q Consensus 358 lEgia~~~r~~~~~l~~-g~~~~~i~~~GGg-a~s~~~~Qi~Advlg 402 (488)
|--...+++++++.|.+ |.+.+-+...||. ...+++-|+=||+..
T Consensus 165 MTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~ 211 (227)
T COG5012 165 MTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccC
Confidence 33344668999999987 8775545555665 466666676666553
No 129
>PRK07157 acetate kinase; Provisional
Probab=28.52 E-value=1.3e+02 Score=31.31 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHH-HHHHHHhHhC
Q 011357 353 EVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQT-ILSCLASIYG 402 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~-~~Qi~Advlg 402 (488)
-.+=++|..+|.++..+-.+.. +..++.|+++||...|.. +++.+.+-++
T Consensus 294 ~A~lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 294 RAKFALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 3455788999999998887653 445899999999996655 7777666554
No 130
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=28.24 E-value=2.1e+02 Score=28.89 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCc-CCHHHHHHHHhHhC
Q 011357 348 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGAS-ANQTILSCLASIYG 402 (488)
Q Consensus 348 ~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga-~s~~~~Qi~Advlg 402 (488)
++++|+.||++--|..++-++.........+++|+..|-.. .++.-|..++=..+
T Consensus 275 ~s~eDia~SlL~mIsnNIGqiAyl~A~~~ni~rV~FgG~fiR~~~itM~tLsyAi~ 330 (371)
T KOG2201|consen 275 VSKEDIARSLLRMISNNIGQIAYLCALNENIKRVYFGGFFIRGHPITMKTLSYAIN 330 (371)
T ss_pred cChHHHHHHHHHHHHhhHHHHHHHHHHHhCccEEEEeeeEEecCceehHHHHHHHH
Confidence 58999999999999999988765443345689999988776 45777787776654
No 131
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=28.24 E-value=1.4e+02 Score=30.89 Aligned_cols=62 Identities=18% Similarity=0.051 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSAS 415 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~a 415 (488)
.....++.+..|+...+...+..+.+ ..+++.|+.+||.. .-+.|-..|+|+.+..++|.-+
T Consensus 64 ~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~~~~~esn~ 126 (396)
T TIGR03492 64 SLRGLLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-----PLLFAWLSGKPYAFVGTAKSDY 126 (396)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-----HHHHHHHcCCCceEEEeeccce
Confidence 66788999999999999988888876 45789999999987 6678888999999855555433
No 132
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=27.43 E-value=82 Score=31.51 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCC-eEEEecCCc-CC-HHHHH-----H-------HHhHhCCceEeecCCChhHHH
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPR-RIIATGGAS-AN-QTILS-----C-------LASIYGCDIYTVQRPDSASLG 417 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~-~i~~~GGga-~s-~~~~Q-----i-------~Advlg~pV~~~~~~e~~alG 417 (488)
.++-.++-++..+..+...+ .++ .+++.||++ +. +.+.+ - ..-+-+.||+++...+.+.+|
T Consensus 239 ~~~~~~~~lg~~i~nl~~~l----dpeggv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~~i~~~~~~l~G 314 (316)
T TIGR00749 239 ALSLFCVIYGRFAGNLALNL----GTRGGVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVYVVLHDNPGLLG 314 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCcEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEEEEcCCCccccC
Confidence 44444445555555554444 244 688999996 22 34333 1 222356799999888888888
Q ss_pred HH
Q 011357 418 AA 419 (488)
Q Consensus 418 aA 419 (488)
||
T Consensus 315 ~~ 316 (316)
T TIGR00749 315 AG 316 (316)
T ss_pred CC
Confidence 74
No 133
>PRK13331 pantothenate kinase; Reviewed
Probab=27.38 E-value=2.3e+02 Score=27.51 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCc-------eEeecCCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCD-------IYTVQRPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~p-------V~~~~~~e~~alGaA~~ 421 (488)
|...|-..++-|.+..+...++.+++..+--+|+++||.+ +++++.+..+ ... .++-+..|-.++
T Consensus 175 T~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~vi~TGG~a------~~l~~~~~~~~~~~~~~~~~--~~~LvL~GL~~i 246 (251)
T PRK13331 175 TQEAIQSGVIYTILAGLRDFIEDWLSLFPDGKIVLTGGDG------ELLHNYLQDLDPELAQRLRV--DPNLIFWGIAAI 246 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCH------HHHHHHhhccccccccccEE--CcchHHHHHHHH
Confidence 7888999999999999999998887511134699999965 3455555543 333 356677776665
Q ss_pred H
Q 011357 422 A 422 (488)
Q Consensus 422 A 422 (488)
+
T Consensus 247 ~ 247 (251)
T PRK13331 247 R 247 (251)
T ss_pred H
Confidence 4
No 134
>PTZ00288 glucokinase 1; Provisional
Probab=27.14 E-value=2e+02 Score=30.07 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCCeEEEecCCc-CCHHHHH------HH-----------HhHh-CCceEe-ecCCChhHHHHHHHHHhc
Q 011357 377 PPRRIIATGGAS-ANQTILS------CL-----------ASIY-GCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 377 ~~~~i~~~GGga-~s~~~~Q------i~-----------Advl-g~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
.++.|++.||++ ++..+.+ .+ .+.+ .+||++ ....+.+.+|||..|...
T Consensus 323 ~P~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~ 391 (405)
T PTZ00288 323 LPLTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQL 391 (405)
T ss_pred CCCEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHh
Confidence 456688888774 4433222 11 2333 469987 777889999999998865
No 135
>PLN02666 5-oxoprolinase
Probab=25.93 E-value=2e+02 Score=34.78 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCe--EEEecCCcCCHHHHHHHHhHhCCc-eEeec-CCChhHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFG--LPSPPRR--IIATGGASANQTILSCLASIYGCD-IYTVQ-RPDSASLGAALRA 422 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~--~g~~~~~--i~~~GGga~s~~~~Qi~Advlg~p-V~~~~-~~e~~alGaA~~A 422 (488)
+.++...+|++-..-.+...+..+. .|.+++. ++..||+ -++..-.+|+.+|+| |.++. ..-.+|+|+++.=
T Consensus 455 ~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ad 532 (1275)
T PLN02666 455 SVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGLAD 532 (1275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhh
Confidence 6677777777777777777777654 2766654 4444443 467888899999999 77764 3446788887754
Q ss_pred H
Q 011357 423 A 423 (488)
Q Consensus 423 ~ 423 (488)
.
T Consensus 533 ~ 533 (1275)
T PLN02666 533 V 533 (1275)
T ss_pred h
Confidence 3
No 136
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=25.76 E-value=1.1e+02 Score=23.93 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCC
Q 011357 164 KIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNC 205 (488)
Q Consensus 164 ~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~ 205 (488)
+++|+.++ . +++||.|..++ -+|+.+|.+.|=
T Consensus 27 ~~vLk~l~i~--~~qLPkI~~~D--------Pva~~lgak~Gd 59 (80)
T COG2012 27 KEVLKELGIE--PEQLPKIKASD--------PVAKALGAKPGD 59 (80)
T ss_pred HHHHHHhCCC--HHHCCcccccC--------hhHHHccCCCCc
Confidence 45999999 6 89999998754 345566666553
No 137
>PRK12440 acetate kinase; Reviewed
Probab=25.72 E-value=1.5e+02 Score=30.90 Aligned_cols=49 Identities=16% Similarity=0.033 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHH-HHHHHHhHhC
Q 011357 353 EVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQT-ILSCLASIYG 402 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~-~~Qi~Advlg 402 (488)
-.+-+++..+|.++..+-.+.. + .++.|+++||...|.. +++.+.+-++
T Consensus 295 ~A~lA~d~f~yri~k~Ig~~~a~l~-gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 295 GATLAFEVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3455788899999988877653 5 6899999999996655 7776666554
No 138
>PRK13321 pantothenate kinase; Reviewed
Probab=24.99 E-value=93 Score=30.16 Aligned_cols=66 Identities=26% Similarity=0.226 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAA 423 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~ 423 (488)
|...|-..++.|.+..+...++.+++ +.+ -.|+++||.++ ++++.+..+... .++-...|-..++.
T Consensus 185 T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~-~~vi~TGG~a~------~l~~~~~~~~~~--~~~Lvl~GL~~~~~ 252 (256)
T PRK13321 185 TVSSIQSGLYYGYAGLVEGIVARIKAELGGP-PRVIATGGFAS------LIAKESRCFDHV--DPDLLLEGLRILYQ 252 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCcHH------HHhhcCCCccEE--CCCcHHHHHHHHHH
Confidence 78888899999999999999998864 333 46999999653 344555544443 35667777777654
No 139
>PF11527 ARL2_Bind_BART: The ARF-like 2 binding protein BART; InterPro: IPR023379 This domain is found in ADP-ribosylation factor-like 2 (ARF2) binding protein, also known as BART, and in uncharacterised proteins. BART binds specifically to ARF2.GTP with a high affinity. However, it does not bind to ARF2.GDP. It is thought that this specific interaction is due to BART being the first identified ARF2-specific effector. The function is not completely characterised []. BART is predominantly cytosolic but can also be found to be associated with mitochondria. BART is also involved in binding to the adenine nucleotide transporter ANT1 []. ; PDB: 2K0S_A 2K9A_A 3DOF_B 3DOE_B.
Probab=24.20 E-value=58 Score=27.66 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=26.7
Q ss_pred cCCceeeccccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011357 447 KTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLVEK 484 (488)
Q Consensus 447 ~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~~~~~l~~~ 484 (488)
+.-.+|+|+.++ .-.|.+.|+.|+++.+.+-..
T Consensus 31 ~~c~~F~~~eEn-----kley~~i~~ey~~lvE~~le~ 63 (121)
T PF11527_consen 31 ENCIVFDDEEEN-----KLEYTEIHQEYKELVEKLLEE 63 (121)
T ss_dssp HHCCCT-SSSSC-----STTHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCcccc-----cHHHHHHHHHHHHHHHHHHHH
Confidence 345789999888 899999999999999887643
No 140
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.97 E-value=2.1e+02 Score=28.28 Aligned_cols=50 Identities=16% Similarity=0.013 Sum_probs=31.6
Q ss_pred HHHHHHcCCCCCCeEEeccChhHHhhhccCC-----CCCCcEEEEeccccccccccCCCC
Q 011357 193 PYFVERFHFNKNCLVVQWSGDNPNSLAGLTL-----STSGDLAISLGTSDTVFGITDDPE 247 (488)
Q Consensus 193 ~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~-----~~~g~~~~s~GTs~~~~~~~~~~~ 247 (488)
+...+.+| +||.. ..|..|+++|=.. -.+..+++++||+---..+.+...
T Consensus 100 ~~L~~~~~----~Pv~v-eNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~giv~~g~l 154 (314)
T COG1940 100 EELEARLG----LPVFV-ENDANAAALAEAWFGAGRGIDDVVYITLGTGIGGGIIVNGKL 154 (314)
T ss_pred HHHHHHHC----CCEEE-ecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEEEEECCEE
Confidence 34444454 44543 4678888776322 235678999999987777776543
No 141
>PRK13320 pantothenate kinase; Reviewed
Probab=22.51 E-value=3.5e+02 Score=26.02 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~ 421 (488)
|...|...++-|.+..+...++.+.+..+.-.|+++||.++ ++++.+..++.. .++-...|-..+
T Consensus 175 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~vi~TGG~a~------~l~~~l~~~~~~--~p~Lvl~GL~~~ 239 (244)
T PRK13320 175 TEECIRSGVVWGCVAEIEGLIEAYKSKLPELLVILTGGDAP------FLASRLKNTIFA--DEHAVLKGLNRI 239 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCHH------HHHHhcCCccEE--CcchHHHHHHHH
Confidence 78888889999999888888888764111247999999854 567777777765 355666676554
No 142
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=21.92 E-value=69 Score=32.73 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCeEEEecCCcCCHHHHHHHHhHh------CCceEeecCCC---hhHHHHHHHHHh
Q 011357 378 PRRIIATGGASANQTILSCLASIY------GCDIYTVQRPD---SASLGAALRAAH 424 (488)
Q Consensus 378 ~~~i~~~GGga~s~~~~Qi~Advl------g~pV~~~~~~e---~~alGaA~~A~~ 424 (488)
.+.|+++||.|+-+-+.+.+.+-+ +.+|.+....+ ++=+|++++|..
T Consensus 292 ~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 292 YENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 356999999999998888887777 55666644332 223366655543
No 143
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=21.87 E-value=1.1e+02 Score=24.02 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeE
Q 011357 164 KIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLV 207 (488)
Q Consensus 164 ~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV 207 (488)
+++|+.++ . .++||.|..++ -+|+.+|++.|--|
T Consensus 24 ~~lL~~y~i~--~~qLP~I~~~D--------Pv~r~~g~k~GdVv 58 (79)
T PRK09570 24 KKLLKEYGIK--PEQLPKIKASD--------PVVKAIGAKPGDVI 58 (79)
T ss_pred HHHHHHcCCC--HHHCCceeccC--------hhhhhcCCCCCCEE
Confidence 45899999 6 79999998754 34566677766433
No 144
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=21.40 E-value=3.1e+02 Score=28.18 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC----C--CCC----------------CeEEEecCC---cCCHHHHHHHHhHhCC
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL----P--SPP----------------RRIIATGGA---SANQTILSCLASIYGC 403 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~----g--~~~----------------~~i~~~GGg---a~s~~~~Qi~Advlg~ 403 (488)
...+.+|-++.++.|.+|..-+.+.+ + .++ ..|+++||| +....|..-+|.-.|.
T Consensus 35 ~~~~~ikr~lr~l~~d~R~~k~~f~~~~p~t~~~Pi~~~~~~~~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl 114 (509)
T KOG2853|consen 35 PGEDVIKRVLRLLSYDFRRWKRLFQEADPFTRRLPIAHMKHGTLDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGL 114 (509)
T ss_pred CchHHHHHHHHhccchHHHHHHhhcccccccccCCCcccccccccccccccccCEEEECCCccchhhHHHHHHHhhcCCc
Confidence 36788999999999999987776541 1 223 234555554 4678999999999998
Q ss_pred ceEeecCCC
Q 011357 404 DIYTVQRPD 412 (488)
Q Consensus 404 pV~~~~~~e 412 (488)
.|.+++..+
T Consensus 115 ~VvVVErdd 123 (509)
T KOG2853|consen 115 NVVVVERDD 123 (509)
T ss_pred eEEEEeccC
Confidence 888876443
No 145
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.13 E-value=1.4e+02 Score=29.10 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=27.2
Q ss_pred CCeEEEecCC--cCCHHHHHHHHhHhCCceEe
Q 011357 378 PRRIIATGGA--SANQTILSCLASIYGCDIYT 407 (488)
Q Consensus 378 ~~~i~~~GGg--a~s~~~~Qi~Advlg~pV~~ 407 (488)
.+-|+++||. +..++-+|-+|..+|+|++.
T Consensus 61 ~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~ 92 (255)
T COG1058 61 ADVVITTGGLGPTHDDLTAEAVAKALGRPLVL 92 (255)
T ss_pred CCEEEECCCcCCCccHhHHHHHHHHhCCCccc
Confidence 5779999987 69999999999999999987
No 146
>PRK12397 propionate kinase; Reviewed
Probab=21.11 E-value=2.3e+02 Score=29.63 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCc-CCHHHHHHHHhHh
Q 011357 353 EVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGAS-ANQTILSCLASIY 401 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga-~s~~~~Qi~Advl 401 (488)
-.+=++|..+|.++..+-.+.. -..++.|+++||.. +|+.+++.+.+-|
T Consensus 296 ~A~lA~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEns~~vR~~ic~~L 346 (404)
T PRK12397 296 QAKLALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNL 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhCCHHHHHHHHhhh
Confidence 3455788899999988887653 12589999999998 6677776666554
No 147
>PRK13318 pantothenate kinase; Reviewed
Probab=21.11 E-value=1.2e+02 Score=29.31 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAA 423 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~ 423 (488)
|...+...++.|++..+...++++++ +. .-+|+++||.++ .++..+..+... .++-...|-..++.
T Consensus 185 T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~-~~~vi~TGG~a~------~l~~~~~~~~~~--~~~Lvl~Gl~~~~~ 252 (258)
T PRK13318 185 TVEAMQSGIYYGYVGLVEGIVKRIKEELGK-DPKVIATGGLAP------LFAEESDTIDIV--DPDLTLKGLRLIYE 252 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCchH------HHHhccCCCcEE--CcccHHHHHHHHHH
Confidence 78889899999999999999988874 32 346999999864 345555555544 34556667665544
No 148
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=21.06 E-value=92 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=25.6
Q ss_pred HHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCc
Q 011357 193 PYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGD 228 (488)
Q Consensus 193 ~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~ 228 (488)
.++|+.+| ++++.|+.|+.|.-+|.+.+-.+..|+
T Consensus 10 k~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GD 44 (107)
T PRK14717 10 KELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGD 44 (107)
T ss_pred HHHHHhcC-CccEEEEecCcchhhccceeeeeccCC
Confidence 35777787 468999999999998887665443333
No 149
>PRK13322 pantothenate kinase; Reviewed
Probab=20.98 E-value=4.3e+02 Score=25.45 Aligned_cols=65 Identities=18% Similarity=0.050 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAA 423 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~ 423 (488)
|...|...++.|++..+...++.+++ +.+ -.|+++||.++ +++..+.. +.. .++-...|-..++.
T Consensus 177 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~-~~vilTGG~a~------~l~~~l~~-~~~--~~~LvL~GL~~~~~ 243 (246)
T PRK13322 177 TVDAVERGCLLMLRGFIESQLEQARELWGPD-FEIFLTGGDAP------LLADHLPQ-ARV--VPDLVFVGLAQYCP 243 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH------HHHhhCCC-CEE--CCCcHHHHHHHHHh
Confidence 78889999999999999999988864 322 36999999864 45555655 443 45667778766654
No 150
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=20.50 E-value=1.6e+02 Score=29.65 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=37.5
Q ss_pred cHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEeccccccccccCCCCC
Q 011357 192 APYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEP 248 (488)
Q Consensus 192 ~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~~~~~~~~~~ 248 (488)
-.+..+.++ .|+..++|+||+..+.-=-|. ..-.-++|+|-+.-+..+-.+..|
T Consensus 354 ~d~~v~~t~--~G~~tiiGGGDTata~~k~g~-~dk~ShVSTGGGasLeLLeGK~LP 407 (416)
T KOG1367|consen 354 MDALVKLTG--KGVTTIIGGGDTATACKKFGT-EDKVSHVSTGGGASLELLEGKVLP 407 (416)
T ss_pred HHHHHHHhc--CCcEEEEcCCcHHHHHHHhCc-ccceeeeecCCceehhhhcCCcCc
Confidence 345555565 699999999999988876665 345567888877666555555444
Done!