Query 011357
Match_columns 488
No_of_seqs 226 out of 1381
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ifr_A Carbohydrate kinase, FG 100.0 1.2E-90 4.2E-95 739.5 39.7 435 1-488 54-499 (508)
2 3ll3_A Gluconate kinase; xylul 100.0 2.3E-90 7.8E-95 736.7 40.5 433 1-487 51-491 (504)
3 4bc3_A Xylulose kinase; transf 100.0 7.4E-89 2.5E-93 730.6 40.1 460 1-484 69-532 (538)
4 3hz6_A Xylulokinase; xylulose, 100.0 4.9E-89 1.7E-93 727.7 37.9 431 1-484 52-502 (511)
5 2itm_A Xylulose kinase, xylulo 100.0 1.2E-84 4.2E-89 690.3 39.1 429 1-486 47-484 (484)
6 3jvp_A Ribulokinase; PSI-II, N 100.0 2.5E-85 8.6E-90 708.0 33.8 442 1-482 64-539 (572)
7 3l0q_A Xylulose kinase; xlylul 100.0 6.2E-83 2.1E-87 687.3 37.5 437 1-484 52-539 (554)
8 3h3n_X Glycerol kinase; ATP-bi 100.0 1.2E-82 4E-87 678.0 37.8 424 1-484 52-497 (506)
9 3g25_A Glycerol kinase; IDP007 100.0 2.1E-82 7.3E-87 675.5 37.8 423 1-483 53-497 (501)
10 2p3r_A Glycerol kinase; glycer 100.0 2E-82 6.7E-87 676.6 33.9 424 1-483 50-494 (510)
11 4e1j_A Glycerol kinase; struct 100.0 5.7E-82 1.9E-86 674.2 37.5 421 1-482 73-517 (520)
12 3ezw_A Glycerol kinase; glycer 100.0 4.9E-81 1.7E-85 668.5 32.8 424 1-481 51-493 (526)
13 3i8b_A Xylulose kinase; strain 100.0 4E-81 1.4E-85 666.2 30.8 415 1-471 47-506 (515)
14 2zf5_O Glycerol kinase; hypert 100.0 3.8E-80 1.3E-84 657.8 36.6 420 1-483 50-486 (497)
15 2d4w_A Glycerol kinase; alpha 100.0 1.6E-80 5.5E-85 661.5 33.3 422 1-483 49-496 (504)
16 2w40_A Glycerol kinase, putati 100.0 1.9E-79 6.5E-84 653.3 38.9 421 1-481 51-499 (503)
17 2dpn_A Glycerol kinase; thermu 100.0 1.8E-79 6.3E-84 652.2 38.2 420 1-483 49-490 (495)
18 3h6e_A Carbohydrate kinase, FG 100.0 1.1E-71 3.8E-76 587.8 28.3 401 1-480 52-470 (482)
19 2uyt_A Rhamnulokinase; rhamnos 100.0 2.8E-71 9.6E-76 588.8 29.3 412 2-479 56-486 (489)
20 1hux_A Activator of (R)-2-hydr 99.4 3.5E-13 1.2E-17 131.4 7.1 128 270-425 128-257 (270)
21 4ehu_A Activator of 2-hydroxyi 97.8 7.2E-05 2.5E-09 72.3 9.4 75 348-425 180-255 (276)
22 2ews_A Pantothenate kinase; PA 97.6 0.00026 9E-09 68.7 11.1 142 268-422 136-286 (287)
23 3h1q_A Ethanolamine utilizatio 97.6 0.00028 9.4E-09 67.8 10.2 71 349-422 201-272 (272)
24 4b9q_A Chaperone protein DNAK; 97.1 0.00065 2.2E-08 73.2 7.3 201 190-425 152-382 (605)
25 4gni_A Putative heat shock pro 97.1 0.0012 4.2E-08 67.3 8.8 77 349-425 315-401 (409)
26 3qfu_A 78 kDa glucose-regulate 97.1 0.0011 3.7E-08 67.1 8.3 76 349-424 314-392 (394)
27 2i7n_A Pantothenate kinase 1; 97.1 0.0017 6E-08 64.7 9.4 150 262-423 195-359 (360)
28 3i33_A Heat shock-related 70 k 97.0 0.0013 4.4E-08 67.0 7.7 77 349-425 322-401 (404)
29 1dkg_D Molecular chaperone DNA 96.7 0.0026 9.1E-08 64.1 7.9 75 350-424 305-381 (383)
30 3qbx_A Anhydro-N-acetylmuramic 96.2 0.03 1E-06 55.8 11.3 104 348-457 256-365 (371)
31 2v7y_A Chaperone protein DNAK; 96.2 0.0072 2.5E-07 63.6 7.3 75 350-424 274-350 (509)
32 3d2f_A Heat shock protein homo 96.0 0.0066 2.3E-07 66.1 6.2 76 350-425 306-383 (675)
33 1yuw_A Heat shock cognate 71 k 95.8 0.013 4.5E-07 62.3 7.4 75 351-425 303-380 (554)
34 3cqy_A Anhydro-N-acetylmuramic 95.3 0.097 3.3E-06 52.2 10.8 85 349-440 264-354 (370)
35 1jce_A ROD shape-determining p 95.1 0.012 4.1E-07 58.3 3.7 73 351-423 247-324 (344)
36 2kho_A Heat shock protein 70; 95.0 0.03 1E-06 60.1 6.8 69 357-425 312-382 (605)
37 3eno_A Putative O-sialoglycopr 94.9 0.066 2.2E-06 53.0 8.3 84 349-437 221-311 (334)
38 2ych_A Competence protein PILM 94.7 0.054 1.8E-06 54.2 7.4 61 349-409 275-338 (377)
39 2ivn_A O-sialoglycoprotein end 94.4 0.092 3.2E-06 51.8 8.2 77 349-425 216-299 (330)
40 3ttc_A HYPF, transcriptional r 94.1 0.11 3.7E-06 55.9 8.4 76 349-424 571-651 (657)
41 3vth_A Hydrogenase maturation 94.1 0.081 2.8E-06 58.0 7.5 77 349-425 665-748 (761)
42 4a2a_A Cell division protein F 93.8 0.058 2E-06 55.1 5.3 61 349-409 293-360 (419)
43 4g9i_A Hydrogenase maturation 92.8 0.17 5.7E-06 55.7 7.4 77 349-425 677-760 (772)
44 2zgy_A Plasmid segregation pro 91.9 0.22 7.6E-06 48.6 6.4 66 352-422 250-319 (320)
45 3ven_A O-carbamoyltransferase 90.3 0.37 1.2E-05 51.0 6.4 76 350-425 280-358 (576)
46 3en9_A Glycoprotease, O-sialog 83.3 2.3 7.8E-05 44.7 7.8 61 349-409 220-283 (540)
47 2e2o_A Hexokinase; acetate and 81.4 4.1 0.00014 38.8 8.2 70 352-425 218-288 (299)
48 4apw_A ALP12; actin-like prote 77.1 5.1 0.00017 39.0 7.5 72 351-424 251-324 (329)
49 4htl_A Beta-glucoside kinase; 74.0 12 0.0004 35.7 9.0 70 352-425 216-292 (297)
50 2gup_A ROK family protein; sug 72.2 14 0.00047 34.9 9.0 70 352-425 206-288 (292)
51 2fsj_A Hypothetical protein TA 72.1 1.8 6.2E-05 42.6 2.7 67 355-423 272-343 (346)
52 3r8e_A Hypothetical sugar kina 71.1 13 0.00044 35.8 8.6 68 353-424 240-319 (321)
53 4db3_A Glcnac kinase, N-acetyl 70.7 7.8 0.00027 37.5 7.0 69 352-424 248-326 (327)
54 2aa4_A Mannac kinase, putative 70.3 11 0.00038 35.5 7.9 68 352-423 212-287 (289)
55 2fxu_A Alpha-actin-1, actin, a 66.8 4.8 0.00016 39.9 4.6 48 378-425 294-350 (375)
56 2ch5_A NAGK protein; transfera 65.7 15 0.0005 35.6 7.8 34 204-240 102-135 (347)
57 3htv_A D-allose kinase, alloki 65.6 28 0.00095 33.3 9.7 69 353-425 219-300 (310)
58 2qm1_A Glucokinase; alpha-beta 63.6 22 0.00074 34.0 8.5 69 353-425 242-322 (326)
59 1sz2_A Glucokinase, glucose ki 62.6 22 0.00076 34.3 8.4 70 352-425 243-327 (332)
60 2yhx_A Hexokinase B; transfera 61.4 15 0.0005 37.7 7.0 47 379-425 385-443 (457)
61 3vgl_A Glucokinase; ROK family 60.8 22 0.00076 34.1 8.0 70 352-425 231-313 (321)
62 2yhw_A Bifunctional UDP-N-acet 59.6 38 0.0013 32.6 9.6 49 191-244 123-176 (343)
63 2hoe_A N-acetylglucosamine kin 58.1 39 0.0013 33.2 9.5 70 352-425 293-372 (380)
64 1saz_A Probable butyrate kinas 55.2 21 0.00073 35.3 6.9 70 354-423 270-347 (381)
65 1zbs_A Hypothetical protein PG 54.8 20 0.0007 33.8 6.5 70 352-425 210-281 (291)
66 3epq_A Putative fructokinase; 48.7 57 0.002 30.9 8.6 69 353-425 204-290 (302)
67 3vov_A Glucokinase, hexokinase 47.7 53 0.0018 31.1 8.2 70 352-425 216-296 (302)
68 1z6r_A MLC protein; transcript 46.9 56 0.0019 32.3 8.5 66 353-422 314-391 (406)
69 1bdg_A Hexokinase; phosphotran 45.9 21 0.0007 36.5 5.1 48 195-244 181-229 (451)
70 2q2r_A Glucokinase 1, putative 45.5 50 0.0017 32.3 7.8 69 352-424 283-371 (373)
71 2ap1_A Putative regulator prot 45.0 31 0.0011 33.0 6.1 68 352-423 248-325 (327)
72 3o8m_A Hexokinase; rnaseh-like 43.9 29 0.001 35.7 5.9 54 188-243 187-241 (485)
73 3js6_A Uncharacterized PARM pr 43.8 20 0.00069 35.2 4.6 74 349-425 261-337 (355)
74 1cza_N Hexokinase type I; stru 42.4 11 0.00037 42.2 2.6 40 205-244 201-241 (917)
75 1z05_A Transcriptional regulat 42.2 75 0.0026 31.7 8.7 68 353-425 337-416 (429)
76 1k8k_A ARP3, actin-like protei 40.6 10 0.00035 38.0 1.8 48 378-425 316-388 (418)
77 1zc6_A Probable N-acetylglucos 39.7 28 0.00097 33.0 4.8 67 352-425 226-294 (305)
78 1woq_A Inorganic polyphosphate 39.2 33 0.0011 31.8 5.1 59 361-425 202-262 (267)
79 2d0o_A DIOL dehydratase-reacti 38.7 9.5 0.00033 39.8 1.2 38 377-414 548-586 (610)
80 1zxo_A Conserved hypothetical 37.6 8.1 0.00028 36.7 0.5 66 354-424 210-278 (291)
81 1nbw_A Glycerol dehydratase re 37.0 14 0.00047 38.7 2.1 35 377-411 550-585 (607)
82 1dw0_A Cytochrome C; asparagin 35.4 10 0.00035 30.8 0.7 33 106-138 78-111 (112)
83 2h3g_X Biosynthetic protein; p 34.3 80 0.0028 29.5 6.9 67 349-424 184-252 (268)
84 3hm8_A Hexokinase-3; glucose, 29.1 46 0.0016 33.8 4.5 46 380-425 386-437 (445)
85 3f9m_A Glucokinase; hexokinase 25.8 39 0.0013 34.6 3.2 57 185-242 183-240 (470)
86 1hmj_A RPB5, protein (subunit 24.7 59 0.002 24.4 3.2 34 163-206 20-54 (78)
87 1eik_A RNA polymerase subunit 24.6 75 0.0026 23.8 3.7 35 163-207 22-57 (77)
88 2nu8_B SCS-beta, succinyl-COA 23.4 1.7E+02 0.0057 28.9 7.3 62 377-443 310-380 (388)
89 3kts_A Glycerol uptake operon 22.9 44 0.0015 29.8 2.6 60 164-238 120-183 (192)
90 2f9w_A Pantothenate kinase; CO 21.8 73 0.0025 29.9 4.1 63 349-421 203-267 (271)
91 3bex_A Type III pantothenate k 21.5 62 0.0021 29.9 3.5 65 349-422 182-246 (249)
92 3cet_A Conserved archaeal prot 21.4 40 0.0014 32.8 2.2 68 349-421 247-321 (334)
93 2e1z_A Propionate kinase; TDCD 20.5 65 0.0022 32.3 3.6 47 354-401 306-355 (415)
94 1k8k_B ARP2, actin-like protei 20.2 28 0.00095 34.6 0.8 48 378-425 298-365 (394)
95 2fp4_B Succinyl-COA ligase [GD 20.2 1.9E+02 0.0066 28.6 7.0 62 377-443 317-387 (395)
No 1
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.2e-90 Score=739.45 Aligned_cols=435 Identities=15% Similarity=0.169 Sum_probs=400.4
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.||++++++++++.++ +++.+|.+|||++|++++|+||++|+| | +|+|+|+|+|+.++
T Consensus 54 ~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~~~~~~v~~D~~G~~----------l----------~~~i~W~D~R~~~~ 113 (508)
T 3ifr_A 54 QWWDNARAVLAELKTTAGESDWRPGGICVTGMLPAVVLLDDRGAV----------L----------RPSIQQSDGRCGDE 113 (508)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCEEEEEEEECSSCBEEECTTSCB----------C----------SCEECTTCCCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChhheEEEEEECCCCcEEEECCCCCC----------c----------ccceeccccChHHH
Confidence 3999999999997653 667899999999999999999999996 7 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccC
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIR 158 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~ 158 (488)
++++.+..+ .++++++||+++++.++++||+|+++|+||+|+++++|++++|||.|+|||+.+ +|+|+||+|++||++
T Consensus 114 ~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~ 191 (508)
T 3ifr_A 114 VAELRAEVD-SEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIATVCGSYDYINMLLTGERV-VDRNWALEGGFIDLA 191 (508)
T ss_dssp HHHHHHHSC-HHHHHHHHSSCSSTTSHHHHHHHHHHHCHHHHHTCSEEECHHHHHHHHHHCCCC-EEHHHHHHHTCEETT
T ss_pred HHHHHhhcc-HHHHHHHHCCCCChhhHHHHHHHHHHcCHHHHHHHhhhcCchHHHHHHhcCCcc-ccHhHhhcccCccCc
Confidence 999998865 578999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccc
Q 011357 159 QRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSD 237 (488)
Q Consensus 159 ~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~ 237 (488)
+++||+++|+.+| + +++||+|+++++++|+|++++|+++||++||||++|+||++|+++|+|++++|++++++|||+
T Consensus 192 ~~~W~~~ll~~~gi~--~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~ 269 (508)
T 3ifr_A 192 SGTVEADLVALAHIP--PSAVPPAHPTHRVLGAVTAEAAALTGLPTGLPVYGGAADHIASALAAGITRPGDVLLKFGGAG 269 (508)
T ss_dssp TTEECHHHHHTTTSC--GGGSCCEECTTSEEEECCHHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCSTTEEEEEESSSE
T ss_pred cCCCCHHHHHHcCCC--HHHCCCCcCCCCeeeccCHHHHHHhCCCCCCeEEEECchHHHHHHhCCCCCCCcEEEEechhh
Confidence 9999999999999 7 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHhc--Cc--cHHHHHHHHhcCCCCCCCeEeEeccC
Q 011357 238 TVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCA--EK--SWDVFNKYLQQTPPLNGGKMGFYYKE 313 (488)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~--~~--~~~~l~~~a~~~~~g~~gl~~lP~l~ 313 (488)
++.+++++|..++....+++. .+|.|+++++++++|.+++|+++.+. .. +|++|++++++++||++|++|+|||+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~~gl~flP~~~ 348 (508)
T 3ifr_A 270 DIIVASATAKSDPRLYLDYHL-VPGLYAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFL 348 (508)
T ss_dssp EEEECBSCCCCBTTBBCCBCS-STTCBCCEEEESSSHHHHHHHHHHHSTTCTTHHHHHHHHHHHTSCTTGGGCEEECCTT
T ss_pred hheeeCCCcccCCCcceeeee-cCCceEEechhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHhcCCCCCCCeEEecCCC
Confidence 999999988776665567764 48999999999999999999999983 23 69999999999999999999999999
Q ss_pred CCCCCC---CCCcceeeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcC
Q 011357 314 HEILPP---LPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASA 389 (488)
Q Consensus 314 G~r~P~---~a~G~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~ 389 (488)
|+|+|. +++|.| +|++ ..|+++|++||++|||||.+|++++.|++ |.++++|+++||++|
T Consensus 349 Ger~P~~d~~arg~~------------~Gl~----~~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~ 412 (508)
T 3ifr_A 349 GEKTPIHDPFASGTF------------TGLS----LSHTRGHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTR 412 (508)
T ss_dssp CCC----CCCCCCEE------------ESCC----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEESGGGG
T ss_pred CCCCCCCCCCcCEEE------------ECCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccc
Confidence 999996 466665 3333 34699999999999999999999999987 888999999999999
Q ss_pred CHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhhHHHHHH
Q 011357 390 NQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAV 469 (488)
Q Consensus 390 s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~ 469 (488)
|++||||+||++|+||.++...|++|+|||++|+++ +|.|+|++++.+ +++..++|+|++++ ++.|++
T Consensus 413 s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a-----~G~~~~~~~~~~--~~~~~~~~~P~~~~-----~~~y~~ 480 (508)
T 3ifr_A 413 SRVWMGIMADVLQRPVQLLANPLGSAVGAAWVAAIG-----GGDDLGWDDVTA--LVRTGEKITPDPAK-----AEVYDR 480 (508)
T ss_dssp CHHHHHHHHHHHTSCEEEEECCSTHHHHHHHHHHHH-----TCSSCCGGGGGG--GSEEEEEECCCGGG-----HHHHHH
T ss_pred CHHHHHHHHHHhCCeEEecCCCCchHHHHHHHHHHH-----hCCCCCHHHHHh--hcCCCeEECcCHHH-----HHHHHH
Confidence 999999999999999999999999999999999999 999999998754 56788899999998 999999
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 011357 470 MMKKRLEIENRLVEKLGRR 488 (488)
Q Consensus 470 ~y~~y~~~~~~l~~~~~~~ 488 (488)
+|++|+++|++++++|+++
T Consensus 481 ~y~~~~~~~~~~~~~~~~~ 499 (508)
T 3ifr_A 481 LYRDFSALYATLHPFFHRS 499 (508)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 2
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=100.00 E-value=2.3e-90 Score=736.73 Aligned_cols=433 Identities=20% Similarity=0.248 Sum_probs=399.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHH
Q 011357 1 MWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 80 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~ 80 (488)
.||++++.+++++.++.. .+|++||||+|++++|+||++|+| | +|+|+|+|+|+.++++
T Consensus 51 ~~~~~~~~~i~~~~~~~~-~~I~~Igis~q~~~~v~~D~~G~p----------l----------~~~i~W~D~R~~~~~~ 109 (504)
T 3ll3_A 51 LIFDAVQEIIFDLTQKID-GKIAAISWSSQMHSLIGLGSDDEL----------L----------TNSITWADNCAKSIVQ 109 (504)
T ss_dssp HHHHHHHHHHHHHHHTCS-SEEEEEEEEECSSCBEEECTTSCB----------S----------SCEECTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCeEEEEEECCCCcEEEECCCCCC----------c----------ccceeCCccCHHHHHH
Confidence 499999999999876533 789999999999999999999996 7 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCCC
Q 011357 81 EIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQR 160 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~ 160 (488)
++.+..+ .++++++||+++++.++++||+|+++|+||+|+++.+|++++|||.|+|||+.+ +|+|+||+|+|||++++
T Consensus 110 ~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~ 187 (504)
T 3ll3_A 110 DAKNRGF-AQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQKWIGIKEYIIFRLTGKLV-TDTTMAAGTGILNLKTL 187 (504)
T ss_dssp HHHHHTH-HHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHHHHCCEEECHHHHHHHHHHSCCE-EEHHHHTTTTCBCTTTS
T ss_pred HHHhccC-HHHHHHHHCCCCCcccHHHHHHHHHHcChHHHHHHhheeCHHHHHHHHHhCCcc-cchhHhhcccCeeCCCC
Confidence 9998764 588999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred CccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 161 VWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 161 ~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
+||+++|+.+| + +++||+|+++++++|+|++++|+++||++||||++|+||++|+++|+|++++|++++|+|||+++
T Consensus 188 ~W~~~ll~~~gi~--~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~ 265 (504)
T 3ll3_A 188 TWDQELLDILKIK--KEQLPKIAQPTKVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAI 265 (504)
T ss_dssp SBCHHHHHHHTCC--GGGSCEEECTTCEECCCCHHHHHHHTCCTTCEEEEEEEHHHHHHHTTTCCSTTEEEEEESSSEEE
T ss_pred CcCHHHHHHcCCC--HHHCCCeeCCcceeeccCHHHHHhcCCCcCCCEEEEccHHHHHHHhCCCCCCCcEEEEechhhhh
Confidence 99999999999 7 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHhcC--ccHHHHHHHHhcCCCCCCCeEeEeccCCCCC
Q 011357 240 FGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE--KSWDVFNKYLQQTPPLNGGKMGFYYKEHEIL 317 (488)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~--~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~ 317 (488)
.+++++|..++.+..+++.+.++.|+++++++++|.+++|+++.+.. ..++++.+++++++||++|++|+|||+|+|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~~~Ger~ 345 (504)
T 3ll3_A 266 RTIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERA 345 (504)
T ss_dssp EEEESSCCCCTTCCSEEEEEETTEEEEEEEESCSHHHHHHHHHHHTCTTCCHHHHHHHHHTSCTTGGGCEEECCTTCBCT
T ss_pred eeeCCCcccCCCCceEEEEeCCCeEEEEeehhhHHHHHHHHHHHhccchhHHHHHHHHHhcCCCCCCCeEEecCccCCCC
Confidence 99999988777665567655578899999999999999999998853 3455666688899999999999999999999
Q ss_pred CC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHH
Q 011357 318 PP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQT 392 (488)
Q Consensus 318 P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~ 392 (488)
|. ++||.| |++. .|+++|++||++|||||.+|++++.|++ +.++++|+++||++||++
T Consensus 346 P~~d~~arg~~~Gl~~-----------------~~~~~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~ 408 (504)
T 3ll3_A 346 PIWDANARGSFVGLTR-----------------MHQKPEMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDF 408 (504)
T ss_dssp TTCBTTCCEEEEEECT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHH
T ss_pred CCCCCccCeEEECCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHH
Confidence 97 567766 6554 3599999999999999999999999987 778999999999999999
Q ss_pred HHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhhHHHHHHHHH
Q 011357 393 ILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMK 472 (488)
Q Consensus 393 ~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~ 472 (488)
|+||+||++|+||.++...|++|+|||++|+++ +|.|+|++++.+ +++..++|+|++++ ++.|+++|+
T Consensus 409 ~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a-----~G~~~~~~~~~~--~~~~~~~~~P~~~~-----~~~Y~~~y~ 476 (504)
T 3ll3_A 409 VRQLCANIFNVPIVTMKEQQSGTLAAMFLARQA-----LGLNQDLSEIGQ--FAQADKVYFPNPKE-----AATYQKLFP 476 (504)
T ss_dssp HHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHH-----TTSCCSGGGGGG--TSCEEEEECCCHHH-----HHHHHHHHH
T ss_pred HHHHHHHhhCCeEEecCCCCchhHHHHHHHHHH-----cCccCCHHHHHH--hcCCCeEEccCHHH-----HHHHHHHHH
Confidence 999999999999999999999999999999999 999999998543 66788899999988 999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 011357 473 KRLEIENRLVEKLGR 487 (488)
Q Consensus 473 ~y~~~~~~l~~~~~~ 487 (488)
+|+++|+++++.|++
T Consensus 477 ~y~~l~~~l~~~~~~ 491 (504)
T 3ll3_A 477 LYCEIRNALAASYGK 491 (504)
T ss_dssp HHHHHHHHHGGGSGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 3
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=100.00 E-value=7.4e-89 Score=730.57 Aligned_cols=460 Identities=49% Similarity=0.822 Sum_probs=408.6
Q ss_pred CHHHHHHHHHHHHhhc-CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHH
Q 011357 1 MWIEALDLMLQKLSKS-LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQC 79 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~-~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~ 79 (488)
+||++++.+++.+.+. +++.+|++||||+|||++|+||++|+..++++|+++||.+||.+.+-.+|+|+|+|+|+.+++
T Consensus 69 ~w~~~~~~~~~~l~~~~~~~~~I~aIgis~q~~~~v~~D~~g~~~l~~l~~~~~l~~~~~~~~pl~~ai~W~D~R~~~~~ 148 (538)
T 4bc3_A 69 MWVQALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQC 148 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEEECSSCEEEEETTHHHHHHTCCTTSCHHHHHTTCBSCSEEECTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHeEEEEecccceeEEEECCCccccccccccccchhhhccccccccCCcccccCcHHHHH
Confidence 3899999998888665 678899999999999999999999874455677665443333322223899999999999999
Q ss_pred HHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCC
Q 011357 80 REIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQ 159 (488)
Q Consensus 80 ~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~ 159 (488)
+++.+.+++.++++++||+++++.++++||+|+++|+||+|+++++|++++|||.|+|||+.+.+|+|+||+|+|||+++
T Consensus 149 ~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~d~l~~~LTG~~~~td~s~As~t~l~d~~~ 228 (538)
T 4bc3_A 149 RQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQD 228 (538)
T ss_dssp HHHHHHHTSHHHHHHHHSSCCCTTSHHHHHHHHHHHCHHHHHTEEEEEEHHHHHHHHHHTSCCCCBHHHHTTSSCEETTT
T ss_pred HHHHHhhCcHHHHHHHHCCCCccccHHHHHHHHHHcCHHHHHHhheEEcHHHHHHHHHhCCCcccccchhhccccccccc
Confidence 99998876568899999999999999999999999999999999999999999999999997548999999999999999
Q ss_pred CCccHHHHHHcCcchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 160 RVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 160 ~~W~~~ll~~~g~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
++||+++|+.+|.++.++||+|+++++++|+|++++|+++||++||||++|+||++|+++|++ +++|++++|+|||+++
T Consensus 229 ~~W~~~ll~~~gi~~~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~~-~~~g~~~~s~GTs~~~ 307 (538)
T 4bc3_A 229 KVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTL 307 (538)
T ss_dssp TEECHHHHHHHCTTHHHHHCCCBCSSCEEEECCHHHHHHHCCCTTCEEECCEEHHHHHHHHTT-CCTTCEEEEESSSEEE
T ss_pred CCCCHHHHHHhCccHHHHCCCcccccccccccCHHHHHHhCCCCCCeEEEecccHHhhhhccc-cCCCcEEEEeccchhe
Confidence 999999999999322589999999999999999999999999999999999999999999995 7999999999999999
Q ss_pred ccccCCCCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCC
Q 011357 240 FGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPP 319 (488)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~ 319 (488)
.+++++|.+++.+..+++.+.++.|+.+++++++|.+++|+++.+...+|++|++++++++||++|++|+||++|+|+|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lp~~~Ger~P~ 387 (538)
T 4bc3_A 308 FLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPE 387 (538)
T ss_dssp EEEESSCCCCSSSEEEEETTEEEEEEEEEEESSSHHHHHHHHHHHSTTCHHHHHHHHHTSCTTGGGCEEEEESSCCSSSC
T ss_pred EEecCCCCCCCCcceEEeecCCCCEEEeehhhccchHHHHHHHHhcCCCHHHHHHHHhcCCCCCCCeEEeecCCCCcCCC
Confidence 99999988877766677754456799999999999999999999876789999999999999999999999999999997
Q ss_pred CCCcceeeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHH
Q 011357 320 LPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLA 398 (488)
Q Consensus 320 ~a~G~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~A 398 (488)
++|.|.+..+. .|++ .|+++|++||++|||||++|++++.|+. +.++++|+++||++||++||||+|
T Consensus 388 -~~G~~~~~~~~------~g~~-----~~~~~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~A 455 (538)
T 4bc3_A 388 -IIGRHRFNTEN------HKVA-----AFPGDVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLA 455 (538)
T ss_dssp -CCEEEEECTTS------CEES-----CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHH
T ss_pred -CCceeeecccc------cccc-----CCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHH
Confidence 77876321111 1222 2699999999999999999999999986 778899999999999999999999
Q ss_pred hHhCCceEeecCCChhHHHHHHHHHhccccccCCC--CCCHHHHHHhhcccCCceeeccccCCchhhHHHHHHHHHHHHH
Q 011357 399 SIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGS--FVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLE 476 (488)
Q Consensus 399 dvlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~--~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~ 476 (488)
||+|+||.++...|++++|||++|+++ +|. |+|++++.+. +.+..++|+|++++ ++.|+++|++|++
T Consensus 456 Dv~g~pV~~~~~~e~~alGaA~lA~~a-----~G~~~~~~~~ea~~~-~~~~~~~~~P~~~~-----~~~Y~~~y~~y~~ 524 (538)
T 4bc3_A 456 DVFDAPVYVIDTANSACVGSAYRAFHG-----LAGGTDVPFSEVVKL-APNPRLAATPSPGA-----SQVYEALLPQYAK 524 (538)
T ss_dssp HHHTSCEEECCCTTHHHHHHHHHHHHH-----HHTGGGSCHHHHHTT-SCCCEEEECCCTTH-----HHHHHHHHHHHHH
T ss_pred HHhCCceEecCCCCchHHHHHHHHHHH-----hCcccCCCHHHHHHh-hcCCCeeECCCHHH-----HHHHHHHHHHHHH
Confidence 999999999999999999999999999 898 8999998764 56778899999988 9999999999999
Q ss_pred HHHHHHHH
Q 011357 477 IENRLVEK 484 (488)
Q Consensus 477 ~~~~l~~~ 484 (488)
+|+++...
T Consensus 525 l~~~~~~~ 532 (538)
T 4bc3_A 525 LEQRILSQ 532 (538)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 4
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=100.00 E-value=4.9e-89 Score=727.66 Aligned_cols=431 Identities=17% Similarity=0.150 Sum_probs=393.3
Q ss_pred CHHHHHHHHHHHHhhc-CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHH
Q 011357 1 MWIEALDLMLQKLSKS-LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQC 79 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~-~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~ 79 (488)
.||++++++++++.+. +++.+|.+||||+|++++|+||++|+| | +|+|+|+|+|+.+++
T Consensus 52 ~~~~~~~~~i~~~~~~~~~~~~I~~Igis~q~~~~v~~D~~G~p----------l----------~~~i~W~D~R~~~~~ 111 (511)
T 3hz6_A 52 DWYDAVQRIASSWWQSGVDARRVSAIVLSGQMQNFLPLDQDHEP----------L----------HRAVLYSDKRPLKEA 111 (511)
T ss_dssp HHHHHHHHHHHHHHTTTCCGGGEEEEEEEECCSCBEEECTTSCB----------S----------SCEECTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhHeEEEEEecccccEEEECCCcCC----------C----------cCceecCCCCHHHHH
Confidence 4999999999997733 567899999999999999999999996 7 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhcccccc-chhhHHHHHhCCccccccchhccccccccC
Q 011357 80 REIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISV-VSSFMASLLIGAYACIDETDAAGMNLMDIR 158 (488)
Q Consensus 80 ~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~-~~dyl~~~LTG~~~~~d~s~As~t~l~d~~ 158 (488)
+++.+..+ .++++++||+++++.++++||+|+++|+||+|+++++|++ ++|||.|+|||+.+ +|+|+||+|++||++
T Consensus 112 ~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~l~~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~ 189 (511)
T 3hz6_A 112 EEINARHG-ADNLWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHA-TDRTNASTTGLYRPK 189 (511)
T ss_dssp HHHHHHHC-HHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTTCCEEECSHHHHHHHHHHSCCE-ECHHHHHHTTCEETT
T ss_pred HHHHhccC-HHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHHHHHHhcCcHHHHHHHHhCCce-eeHhHhhcccceeCC
Confidence 99998875 6889999999999999999999999999999999999999 99999999999998 999999999999999
Q ss_pred CCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccc
Q 011357 159 QRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSD 237 (488)
Q Consensus 159 ~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~ 237 (488)
+++||+++|+.+| + +++||+|+++++++|+|++++|+++||++||||++|+||++|+++|+|++++|++++|+|||+
T Consensus 190 ~~~W~~~ll~~~gi~--~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~ 267 (511)
T 3hz6_A 190 DDAWHVELLADYGFS--LDLMPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTG 267 (511)
T ss_dssp TTEECHHHHHHTTCC--GGGSCEECCTTSEEEECCHHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCSTTCEEEEESSSE
T ss_pred CCCcCHHHHHHhCCC--HHHCCCCcCCCCcccccCHHHHHhhCCCCCCeEEEECchHHHHHHhCCCCCCCcEEEEecchh
Confidence 9999999999999 7 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC-CCCCC-Cccc--cccCccCCCcEEEeeeeechhhHHHHHHHHhc--C-ccHHHHHHHHhcCCCC---CCCeE
Q 011357 238 TVFGITD-DPEPR-LEGH--VFPNPVDTKGYMIMLVYKNASLTREDVRNRCA--E-KSWDVFNKYLQQTPPL---NGGKM 307 (488)
Q Consensus 238 ~~~~~~~-~~~~~-~~~~--~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~--~-~~~~~l~~~a~~~~~g---~~gl~ 307 (488)
++.++++ +|..+ +... .+++. .+|.|+.+++++++|.+++|+++.+. . .+|++|++++++++|| ++|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~l~~~a~~~~~g~~~~~gl~ 346 (511)
T 3hz6_A 268 WLARLTQTDPVGDMPVGTIFRLAGI-IAGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLL 346 (511)
T ss_dssp EEEEEEECCCCCSCCSSCCEEECSS-STTEEEEEEEESSSHHHHHHHGGGGTCCTTSCSHHHHHHHHHHHTTCCCCTTCE
T ss_pred hheeecCCeecccCCCCceEEEEEe-cCCceEEEeehhhHHHHHHHHHHHhcccccccHHHHHHHHHhCCCCCCCCCCEE
Confidence 9999998 88877 6543 36664 47887777899999999999999886 3 4799999999999999 99999
Q ss_pred eEeccCCCCCCC---CCCcceeeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEe
Q 011357 308 GFYYKEHEILPP---LPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIAT 384 (488)
Q Consensus 308 ~lP~l~G~r~P~---~a~G~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~ 384 (488)
|+|||+|+|+|. ++||.| +|++ ..|+++|++||++|||||.+|++++.|++|. +++|+++
T Consensus 347 ~~P~~~Ger~P~~d~~arg~~------------~Gl~----~~~~~~~l~RAvlEgia~~~~~~~~~l~~g~-~~~i~~~ 409 (511)
T 3hz6_A 347 FVPYLHAERCPVELPAPRGAL------------LGVT----GATTRAQILLAVLEGAALSLRWCAELLGMEK-VGLLKVV 409 (511)
T ss_dssp EEEESSCBCSSSCBSSCEEEE------------ECCC----TTCCHHHHHHHHHHHHHHHHHHHHHHHTGGG-CCEEEEE
T ss_pred EeCCCCCCCCCCCCCccceEE------------EcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEe
Confidence 999999999997 456655 3333 3469999999999999999999999997655 8999999
Q ss_pred cCCcCCHHHHHHHHhHhCCce-EeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhc---ccCCceeeccccCCc
Q 011357 385 GGASANQTILSCLASIYGCDI-YTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKL---EKTSLSCKLAVTAGD 460 (488)
Q Consensus 385 GGga~s~~~~Qi~Advlg~pV-~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~---~~~~~~~~P~~~~~~ 460 (488)
||++||++|+||+||++|+|| .++...|++|+|||++|+++ +|.|+|++++.++ + ++..++|+|++++
T Consensus 410 GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~alGaA~lA~~a-----~G~~~~~~~~~~~-~~~~~~~~~~~~P~~~~-- 481 (511)
T 3hz6_A 410 GGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVE-----LEWSHSIQDFLRE-ADLREPASNILHPQPCD-- 481 (511)
T ss_dssp SGGGGCHHHHHHHHHHHTCEEEECCCGGGHHHHHHHHHHHHH-----TTSCSCHHHHHHH-HHTC---CCCBCCCCCC--
T ss_pred CchhcCHHHHHHHHHHHCCeeEEecCCCCchHHHHHHHHHHH-----hCCcCCHHHHHHH-hhccCCCCeEECcCHHH--
Confidence 999999999999999999999 99889999999999999999 9999999776664 6 6778899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 011357 461 QQLVSKYAVMMKKRLEIENRLVEK 484 (488)
Q Consensus 461 ~~~~~~Y~~~y~~y~~~~~~l~~~ 484 (488)
++.|+++|++|+++|++++++
T Consensus 482 ---~~~y~~~y~~~~~~~~~l~~~ 502 (511)
T 3hz6_A 482 ---EGRRRRKFERFKQCVETLGRL 502 (511)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTC-
T ss_pred ---HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998765
No 5
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=100.00 E-value=1.2e-84 Score=690.32 Aligned_cols=429 Identities=20% Similarity=0.284 Sum_probs=386.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHH
Q 011357 1 MWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 80 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~ 80 (488)
+||++++++++++.++..+++|.+||||+|++++++||++|+| + +|+|+|+|.|+.++++
T Consensus 47 ~~~~~i~~~i~~~~~~~~~~~i~~Igis~~~~~~v~~D~~G~~----------l----------~~~i~w~D~R~~~~~~ 106 (484)
T 2itm_A 47 QWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRV----------L----------RPAILWNDGRCAQECT 106 (484)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCBEEECTTCCB----------C----------SCEECTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccceEEEEEcCCcCcEEEECCCcCC----------C----------cccceecccCcHHHHH
Confidence 4899999999998654446789999999999999999999995 6 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCCC
Q 011357 81 EIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQR 160 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~ 160 (488)
++.+..+ .++++||+++++.++++||+|+++|+||+|++++++++++|||.|+|||+.+ +|+|+||+|++||++++
T Consensus 107 ~l~~~~~---~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~l~~~d~l~~~LTG~~~-td~s~As~t~l~d~~~~ 182 (484)
T 2itm_A 107 LLEARVP---QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFA-SDMSDAAGTMWLDVAKR 182 (484)
T ss_dssp HHHHHCT---THHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCCEEECHHHHHHHHHHSCCE-EEHHHHHTTTCEETTTT
T ss_pred HHHHhHH---HHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhheeCcHHHHHHHHhCCce-eeHHHhhccccccCCCC
Confidence 9988753 3678899999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred CccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 161 VWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 161 ~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
+||+++|+.+| + .++||+|+++++++|+|++++|+++||+ ||||++|+||++|+++|+|++++|++++++|||+++
T Consensus 183 ~W~~~ll~~~gi~--~~~lp~i~~~~~~~G~~~~~~a~~~Gl~-g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~ 259 (484)
T 2itm_A 183 DWSDVMLQACDLS--RDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVY 259 (484)
T ss_dssp EECHHHHHTTTCC--GGGSCEEECTTSEEEECCHHHHHHHTSC-CCEEECCEEHHHHHHHHHTCCSTTCEEEEESSSEEE
T ss_pred CcCHHHHHHcCCC--HHHCCCccCCcceeeccCHHHHHHhCCC-CCeEEEEchHHHHHHHhCCCCCCCcEEEEccchhee
Confidence 99999999999 7 7999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCc--cccccCccCCCcEEEeeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCC
Q 011357 240 FGITDDPEPRLE--GHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEIL 317 (488)
Q Consensus 240 ~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~ 317 (488)
..++++|.+++. ...+++. .+|.|+++++++++|.+++|+++.+...+|+++++++++.+++++|++|+||++|+|+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~a~~~~~~~~gl~~lP~~~G~r~ 338 (484)
T 2itm_A 260 FAVSEGFLSKPESAVHSFCHA-LPQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERT 338 (484)
T ss_dssp EEECSSCCCCCSSSCEEEECS-STTCEEEEEEECCHHHHHHHHHHHTTCCSHHHHHHHGGGCCTTSCCCEEEEEEC----
T ss_pred EEecCCCccCcccceEEeecc-cCCeeeeeehhhhHHHHHHHHHHhcCcccHHHHHHHHhcCCCCCCCeEEeCCCCCCCC
Confidence 888887765543 2345553 4899999999999999999999988656799999999999999999999999999999
Q ss_pred CC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHH
Q 011357 318 PP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQT 392 (488)
Q Consensus 318 P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~ 392 (488)
|. +++|.| |++. .|+++|++||++||++|.+|++++.|++ |.++++|+++||++||++
T Consensus 339 P~~~~~a~g~~~Gl~~-----------------~~~~~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~ 401 (484)
T 2itm_A 339 PHNNPQAKGVFFGLTH-----------------QHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEY 401 (484)
T ss_dssp ----CCEEEEEEEEET-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHH
T ss_pred CCCCCCCceEEEcCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHH
Confidence 97 567766 6654 3599999999999999999999999987 778899999999999999
Q ss_pred HHHHHHhHhCCceEeecCCCh-hHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhhHHHHHHHH
Q 011357 393 ILSCLASIYGCDIYTVQRPDS-ASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMM 471 (488)
Q Consensus 393 ~~Qi~Advlg~pV~~~~~~e~-~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y 471 (488)
|+||+||++|+||.++...|. +|+|||++|+++ +|.+++++++.+. + ...++|+|++++ ++.|+++|
T Consensus 402 ~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA~~~-----~g~~~~~~~~~~~-~-~~~~~~~P~~~~-----~~~y~~~y 469 (484)
T 2itm_A 402 WRQMLADISGQQLDYRTGGDVGPALGAARLAQIA-----ANPEKSLIELLPQ-L-PLEQSHLPDAQR-----YAAYQPRR 469 (484)
T ss_dssp HHHHHHHHHCCCEEEESCTTSCHHHHHHHHHHHH-----HCTTSCHHHHSCC-C-CEEEEECCCHHH-----HHHHHHHH
T ss_pred HHHHHHHHhCCeEEeCCCCCcccHHHHHHHHHHH-----cCCcCCHHHHHHh-c-CCCeEECCCHHH-----HHHHHHHH
Confidence 999999999999999998886 899999999999 9999999998653 3 566789999988 89999999
Q ss_pred HHHHHHHHHHHHHhc
Q 011357 472 KKRLEIENRLVEKLG 486 (488)
Q Consensus 472 ~~y~~~~~~l~~~~~ 486 (488)
++|+++|++++++|+
T Consensus 470 ~~~~~~~~~~~~~~~ 484 (484)
T 2itm_A 470 ETFRRLYQQLLPLMA 484 (484)
T ss_dssp HHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988774
No 6
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=100.00 E-value=2.5e-85 Score=708.03 Aligned_cols=442 Identities=15% Similarity=0.191 Sum_probs=386.4
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCC-CCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDP-KKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~-~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
+||++++++++++.++ +++.+|++||||+||+++|+||++|+|+.+..+- ++|. .++|+|+|+|+.+
T Consensus 64 ~~~~~~~~~i~~~l~~~~~~~~~I~~Igis~q~~~~v~~D~~G~pl~~~~~~~~~p~----------~~ai~W~D~R~~~ 133 (572)
T 3jvp_A 64 DYVEVLTTSVPAVMKESGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPH----------SWVKLWKHHAAQD 133 (572)
T ss_dssp HHHHHHTTHHHHHHHC---CCSCEEEEEEEECSSCEEEECTTSCBGGGSSSTTSSGG----------GSEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhHEEEEEEecCCCcEEEECCCCCCCccCcccccccc----------ccceecCccchHH
Confidence 4899999999997654 6778999999999999999999999973111000 0111 2389999999999
Q ss_pred HHHHHHHHhCC-HHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccc
Q 011357 78 QCREIEKAVGG-ALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMD 156 (488)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d 156 (488)
+++++.+.+++ .++++++||+++++.++++||+|+++|+||+|+++++|++++|||.|+|||+.+ +|+|+||+|++||
T Consensus 134 ~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d 212 (572)
T 3jvp_A 134 KANAINEMAEKRGEAFLPRYGGKISSEWMIAKVWQILDEAEDVYNRTDQFLEATDWIVSQMTGKIV-KNSCTAGYKAIWH 212 (572)
T ss_dssp HHHHHHHHHHHHTCTTGGGGTTCCCSSSHHHHHHHHHHHHHHHHHHCSEEEEHHHHHHHHHHSSCC-EEHHHHHHHSCCB
T ss_pred HHHHHHHhccccHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHHHhheEecHHHHHHHHhcCCce-eehhhccccceeC
Confidence 99999876420 256889999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred cCCCCc-cHHHHHHcCc---ch-Hhhc-CCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEE
Q 011357 157 IRQRVW-SKIVLEATAP---SL-EEKL-GKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLA 230 (488)
Q Consensus 157 ~~~~~W-~~~ll~~~g~---~~-~~~L-P~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~ 230 (488)
++++| |+++|+.+|+ .+ +++| |+|+++++++|+|++++|+++||++|+||++|+||++|+++|+|++++|+++
T Consensus 213 -~~~~W~~~ell~~~g~~l~~i~~~~L~p~i~~~~~~~G~l~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~ 291 (572)
T 3jvp_A 213 -KREGYPSNEFFKALDPRLEHLTTTKLRGDIVPLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPGKLV 291 (572)
T ss_dssp -TTTBSCCHHHHHTTCGGGTTSTTTTTCSCEECTTSEEEECCHHHHHHHTSCTTCEEECCEETTTTHHHHTTCCSSEEEE
T ss_pred -CCCCcCCHHHHHHhCcccccCCHhHCCCccCCcCccccccCHHHHHHhCCCCCCeEEEeCchHHHHHhhCCCCCCCcEE
Confidence 99999 9999999982 11 4666 7999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCCCCCCCccc-cccCccCCCcEEEeeeeechhhHHHHHHHHhcC------------ccHHHHHHHHh
Q 011357 231 ISLGTSDTVFGITDDPEPRLEGH-VFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE------------KSWDVFNKYLQ 297 (488)
Q Consensus 231 ~s~GTs~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~------------~~~~~l~~~a~ 297 (488)
+++|||+++..+++++...+... .+.....||.|.++++++++|.+++|+++.+.. +.|++|+++++
T Consensus 292 ~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~g~~~~~~l~~~a~ 371 (572)
T 3jvp_A 292 MAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAVGDIFAWFVKHGVSAATFDEAQEKGVNVHALLEEKAS 371 (572)
T ss_dssp EEESSSEEEEEEESSCCCCTTCSEEEETSSSTTSEEEEEEESCSHHHHHHHHHHTSBHHHHHHHHHTTBCHHHHHHHHHT
T ss_pred EEecchhheeeecCCCccCCCceeeccCccCCCcEEEeehhhhHHHHHHHHHHhccchhhHHHHHhcCCCHHHHHHHHHH
Confidence 99999998888887665443221 122223589999999999999999999998842 34889999999
Q ss_pred cCCCCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcC
Q 011357 298 QTPPLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFG 373 (488)
Q Consensus 298 ~~~~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~ 373 (488)
+++||++|++|+|||.|+|+|+ +++|.| |++.. |+++||+||++|||||++|++++.|+
T Consensus 372 ~~~~g~~gl~~lP~~~Ger~P~~d~~arg~~~Gl~~~-----------------~t~~~l~RAvlEgia~~~r~~~~~l~ 434 (572)
T 3jvp_A 372 QLRPGESGLLALDWWNGNRSILVDTELSGMLLGYTLQ-----------------TKPEEIYRALLEATAFGTRAIVDAFH 434 (572)
T ss_dssp SSCTTSSCCEEECCTTCCCTTTCCSSCCEEEEEECTT-----------------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCeEeCCccCCCCCCCCCCCcCEEEECCCCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 577766 65543 59999999999999999999999998
Q ss_pred C-CCCCCeEEEecCCc-CCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCC----CCCCHHHHHHhhccc
Q 011357 374 L-PSPPRRIIATGGAS-ANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKG----SFVPISNMYKDKLEK 447 (488)
Q Consensus 374 ~-g~~~~~i~~~GGga-~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G----~~~~~~~a~~~~~~~ 447 (488)
+ |.++++|+++||++ ||++|+||+|||+|+||.++...|++|+|||++|+++ +| .|+|++|+.+. +++
T Consensus 435 ~~g~~~~~i~~~GGga~ks~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a-----~G~~~~~~~~~~e~~~~-~~~ 508 (572)
T 3jvp_A 435 GRGVEVHELYACGGLPQKNHLLMQIFADVTNREIKVAASKQTPALGAAMFASVA-----AGSEVGGYDSIEEAAKK-MGR 508 (572)
T ss_dssp TTTCCEEEEEEESSHHHHCHHHHHHHHHHHTSCEEEBCCSSHHHHHHHHHHHHH-----HCSSSSSCSCHHHHHHH-HCC
T ss_pred HcCCCcCEEEEEcCchhhCHHHHHHHHHHHCCeeEecCCCccHHHHHHHHHHHh-----cCCCccccCCHHHHHHH-hhc
Confidence 7 88889999999999 9999999999999999999999999999999999999 89 99999998774 544
Q ss_pred C-CceeeccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 011357 448 T-SLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLV 482 (488)
Q Consensus 448 ~-~~~~~P~~~~~~~~~~~~Y~~~y~~y~~~~~~l~ 482 (488)
. .++|+|++++ ++.|+++|++|+++|++++
T Consensus 509 ~~~~~~~P~~~~-----~~~Y~~~y~~y~~l~~~l~ 539 (572)
T 3jvp_A 509 VKDETFKPIPEH-----VAIYEKLYQEYVTLHDYFG 539 (572)
T ss_dssp BCSCCBCCCHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEeeCHHH-----HHHHHHHHHHHHHHHHHHh
Confidence 3 5789999988 9999999999999999985
No 7
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=100.00 E-value=6.2e-83 Score=687.26 Aligned_cols=437 Identities=14% Similarity=0.150 Sum_probs=383.9
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCC-CcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPK-KPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~-~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ +++.+|.+||||+| +++|+||++|+|+. ++.+ +|. +|+|+|+|+|+.+
T Consensus 52 ~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~-~~~v~~D~~G~pl~--~~~~~~~~----------~~ai~W~D~Ra~~ 118 (554)
T 3l0q_A 52 NIWQAVCNAVRDAVNQADINPIQVKGLGFDAT-CSLVVLDKEGNPLT--VSPSGRNE----------QNVIVWMDHRAIT 118 (554)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC-SCEEEEETTSCBCC--CSTTCCTT----------CCEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHhHEEEEEEcCC-CceEEECCCCCEee--ccCCCCCC----------CCcEEecccchHH
Confidence 4999999999997654 66789999999998 89999999999842 2322 344 7999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccc--c
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNL--M 155 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l--~ 155 (488)
+++++.+. + ++++++||+++++.++++||+|+++|+||+|+++.+|++++|||.|+|||+.. .|++|.+++ |
T Consensus 119 ~~~~l~~~-~--~~~~~~tG~~~~~~~~~~Kl~Wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~---~s~as~t~~~~~ 192 (554)
T 3l0q_A 119 QAERINAT-K--HPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGHLFDLPDFLTWRATKDET---RSLCSTVCKWTY 192 (554)
T ss_dssp HHHHHHHH-T--CGGGGGBTTCCCTTSHHHHHHHHHHHCHHHHHHEEEEEEHHHHHHHHHHSCCC---EEHHHHHHHSCC
T ss_pred HHHHHHHh-H--HHHHHHhCCCCChhhHHHHHHHHHHhChHHHHHhceEEcHHHHHHHHHhCCcc---ccccchhhcccc
Confidence 99999876 2 56899999999999999999999999999999999999999999999999864 567777654 7
Q ss_pred ccCCCCccHHHHHHcC-cchH----hhcC-CcccCCcccc-cccHHHHHHcCCCCCCeEEeccChhHHhhhcc-CCC-CC
Q 011357 156 DIRQRVWSKIVLEATA-PSLE----EKLG-KLAPAHAVAG-CIAPYFVERFHFNKNCLVVQWSGDNPNSLAGL-TLS-TS 226 (488)
Q Consensus 156 d~~~~~W~~~ll~~~g-~~~~----~~LP-~i~~~~~~~G-~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~-g~~-~~ 226 (488)
|+++++||+++|+.+| +++. ++|| +|+++++++| +|++++|+++||++||||++|++|++|+++|+ |+. ++
T Consensus 193 d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp~~i~~~~~~~G~~lt~~~A~~~GL~~g~pV~~g~gD~~aa~lg~~G~~~~~ 272 (554)
T 3l0q_A 193 LGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPMGAPLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVT 272 (554)
T ss_dssp BTTTTBCCHHHHHHHTCGGGGHHHHTTTCSCEECTTCBCTTSSCHHHHHHHTCCTTCEEBCCEEHHHHHHHHHTTCCCTT
T ss_pred ccccCCCCHHHHHHcCCccccchhHHhCCCcccCCcCeeCcccCHHHHHHhCCCCCCeEEEeChHHHhHHhhccccccCC
Confidence 8899999999999999 6321 2899 6999999999 89999999999999999999999999999996 776 68
Q ss_pred C-------cEEEEeccccccccccCCCCCCCcccc--ccCccCCCcEEEeeeeechhhHHHHHHHHhc------------
Q 011357 227 G-------DLAISLGTSDTVFGITDDPEPRLEGHV--FPNPVDTKGYMIMLVYKNASLTREDVRNRCA------------ 285 (488)
Q Consensus 227 g-------~~~~s~GTs~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~------------ 285 (488)
| ++.+++|||+++.+++++|..++..+. +++ ..|+.|+.+++++++|.+++|+++.+.
T Consensus 273 G~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~ 351 (554)
T 3l0q_A 273 GENANFDRRIALIGGTSTAHMAMSRSAHFISGIWGPYYSA-ILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNK 351 (554)
T ss_dssp SCCCCTTTEEEEECSSSEEEEEEESSCCCCTTSEEEEETS-SSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHT
T ss_pred CccccccceEEEEecchheeeeecCCccccCCcceeeccc-ccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhc
Confidence 8 788999999999999998887765432 333 358999999999999999999998753
Q ss_pred -CccHHHHHHHHhcCCCC-------CCCeEeEeccCCCCCCC---CCCcceeeeecccccccccCcccccccCCChHHH-
Q 011357 286 -EKSWDVFNKYLQQTPPL-------NGGKMGFYYKEHEILPP---LPVGFHRYILENFEGETLDGVNEVEVKEFDPPSE- 353 (488)
Q Consensus 286 -~~~~~~l~~~a~~~~~g-------~~gl~~lP~l~G~r~P~---~a~G~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~- 353 (488)
.+.|+.|+++++++++| ++|++|+|||+|+|+|+ ++||.| +|++ ..|+++||
T Consensus 352 ~~~~~~~l~~~~~~~~~~~~~~~~~~~gl~flP~~~Ger~P~~d~~arg~~------------~Gl~----~~~~~~~l~ 415 (554)
T 3l0q_A 352 GETIYEALNYILRQMAGEPENIAFLTNDIHMLPYFHGNRSPRANPNLTGII------------TGLK----LSTTPEDMA 415 (554)
T ss_dssp TCCHHHHHHHHHHHHHSSGGGGGGGGTTCCEECCTTCBCSSSCBTTCCCEE------------CSCC----SCCSHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCCccccccCceEEcccccCCCCCCCCCCCcEEE------------ECCC----CCCCHHHHH
Confidence 23588999888888776 79999999999999997 466655 3443 34699999
Q ss_pred --HHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhcccccc
Q 011357 354 --VRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSK 430 (488)
Q Consensus 354 --~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~ 430 (488)
+||++|||||++|++++.|++ |.++++|+++||++||++|+||+|||+|+||.+++..|++++|||++|+++
T Consensus 416 r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~~~~e~~alGAA~lA~~a----- 490 (554)
T 3l0q_A 416 LRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGCAMLLPEESEAMLLGSAMMGTVA----- 490 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEESCSCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEecCCCcchHHHHHHHHHHH-----
Confidence 899999999999999999987 888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHhhcccCCceeec-cccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011357 431 KGSFVPISNMYKDKLEKTSLSCKL-AVTAGDQQLVSKYAVMMKKRLEIENRLVEK 484 (488)
Q Consensus 431 ~G~~~~~~~a~~~~~~~~~~~~~P-~~~~~~~~~~~~Y~~~y~~y~~~~~~l~~~ 484 (488)
+|.|+|++++.++ +++..++|+| ++++ ++.|+++|++|+++|+++++.
T Consensus 491 ~G~~~~~~~a~~~-~~~~~~~~~P~~~~~-----~~~Y~~~y~~y~~l~~~~~~~ 539 (554)
T 3l0q_A 491 AGVFESLPEAMAA-MSRIGKTVTPQTNKI-----KAYYDRKYRVFHQMYHDHMRY 539 (554)
T ss_dssp TTSSSSHHHHHHH-HCCEEEEECCCCHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHH-hcCCCcEEeCCCHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 6778889999 9988 999999999999999999873
No 8
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=100.00 E-value=1.2e-82 Score=678.05 Aligned_cols=424 Identities=13% Similarity=0.132 Sum_probs=379.2
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ +++.+|.+||||+|++++++||++ |+| | +|+|+|+|+|+.+
T Consensus 52 ~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~~~~v~~D~~~G~~----------l----------~~~i~w~D~R~~~ 111 (506)
T 3h3n_X 52 EIWNSVQSVIAGAFIESGIRPEAIAGIGITNQRETTVVWDKTTGQP----------I----------ANAIVWQSRQSSP 111 (506)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECSSCBEEEETTTCCB----------S----------SCEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhheEEEEeeCCcccEEEEeCCCCeE----------C----------CCceEecCcchHH
Confidence 3899999999997654 667899999999999999999997 995 7 8999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhC--Cccccccchhcc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAG 151 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~d~s~As~ 151 (488)
+++++.+.. ..++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+||| +.+ +|+|+||+
T Consensus 112 ~~~~l~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-td~s~As~ 189 (506)
T 3h3n_X 112 IADQLKVDG-HTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV-TDYSNASR 189 (506)
T ss_dssp HHHHHHHTT-CHHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHHHHHTTCEEEECHHHHHHHHHTTTSCCE-EEHHHHHT
T ss_pred HHHHHHhcc-CHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHHHHhcCCeEEecHHHHHHHHhcCCceee-eEHHHhhh
Confidence 999999874 46889999999999999999999999999999999987 77899999999999 566 99999999
Q ss_pred ccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEE
Q 011357 152 MNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLA 230 (488)
Q Consensus 152 t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~ 230 (488)
|+|||+++++||+++|+.+| + +++||+|+++++++|++++++ ++| +||||++|++|++|+++|+|++++|+++
T Consensus 190 t~l~d~~~~~W~~~ll~~~gi~--~~~LP~i~~~~~~~G~~~~~~--~lg--~g~pV~~g~~D~~aa~~g~g~~~~g~~~ 263 (506)
T 3h3n_X 190 TMLYNIHKLEWDQEILDLLNIP--SSMLPEVKSNSEVYGHTRSYR--FYG--SEVPIAGMAGDQQAALFGQMAFEKGMIK 263 (506)
T ss_dssp TTSEETTTTEECHHHHHHTTCC--GGGCCEEECSEEEEEECCGGG--TTT--CCCEEEEEEEHHHHHHHHTTCCSTTCEE
T ss_pred hhCeecCCCCcCHHHHHHcCcC--HHHCCceecCCCcceeeChHH--hcC--CCCeEEEECCcHHHHHHhCCCCCCCcEE
Confidence 99999999999999999999 7 899999999999999999987 466 7999999999999999999999999999
Q ss_pred EEeccccccccccC-CCCCCCccc--cccCccCCC--cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCC
Q 011357 231 ISLGTSDTVFGITD-DPEPRLEGH--VFPNPVDTK--GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNG 304 (488)
Q Consensus 231 ~s~GTs~~~~~~~~-~~~~~~~~~--~~~~~~~~g--~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~ 304 (488)
+++|||+++.+.++ +|..++.+. .++|.+ +| .|..+++++++|.+++|+++.+.. .+|+++++++++++++ +
T Consensus 264 ~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~-~ 341 (506)
T 3h3n_X 264 NTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGI-NGKVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGD-N 341 (506)
T ss_dssp EEESSSEEEEEEEETCCCSCCTTSEEEEEEEE-TTEEEEEEEEEECCSSHHHHHHHHTSCCCSSTTHHHHHHTTCCSC-S
T ss_pred EEecchheeeeecCCccccCCCceEEEeeeec-CCCCEEEEecchhhHHHHHHHHHHHcCCCCcHHHHHHHHhcCCCC-C
Confidence 99999998777664 454444332 345543 44 699999999999999999998853 5789999999988875 9
Q ss_pred CeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCC
Q 011357 305 GKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPP 378 (488)
Q Consensus 305 gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~ 378 (488)
|++|+|||+|+|+|+ ++||.| |++. .|+++||+||++|||||.+|++++.|++ |.++
T Consensus 342 gl~~~P~~~Ger~P~~d~~arg~~~Gl~~-----------------~~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~ 404 (506)
T 3h3n_X 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTR-----------------GTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDI 404 (506)
T ss_dssp CCEEECCTTCBCTTTCBTTCCCEEECCCT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred ceEEeccccCCCCCccCCCCCEEEEccCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999997 466665 5443 4699999999999999999999999985 7889
Q ss_pred CeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccC
Q 011357 379 RRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTA 458 (488)
Q Consensus 379 ~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~ 458 (488)
++|+++||++||++|+||+||++|+||.++...|++|+|||++|+++ +|.|+|++++.+ +++..++|+|++++
T Consensus 405 ~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a-----~G~~~~~~~~~~--~~~~~~~~~P~~~~ 477 (506)
T 3h3n_X 405 PLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLA-----VGFWKDLDELKS--MAEEGQMFTPEMPA 477 (506)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHH-----TTSSCSHHHHHT--TCCCCCEECCCSCH
T ss_pred CEEEEecccccCHHHHHHHHHHhCCeEEecCCCcchhHHHHHHHHHH-----hCccCCHHHHHH--hcCCCeEECCCCCH
Confidence 99999999999999999999999999999999999999999999999 999999999764 56788999999875
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH
Q 011357 459 GDQQLVSKYAVMMKKRLEIENRLVEK 484 (488)
Q Consensus 459 ~~~~~~~~Y~~~y~~y~~~~~~l~~~ 484 (488)
+.|+++|++|+++|+++...
T Consensus 478 ------~~~~~~y~~~~~~~~~~~~~ 497 (506)
T 3h3n_X 478 ------EERDNLYEGWKQAVAATQTF 497 (506)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHHHHHhhh
Confidence 56999999999999998763
No 9
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=100.00 E-value=2.1e-82 Score=675.50 Aligned_cols=423 Identities=16% Similarity=0.175 Sum_probs=379.0
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ +++.+|.+|||++|++++++||++ |+| | +|+|+|+|+|+.+
T Consensus 53 ~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~~~~v~~D~~~G~~----------l----------~~~i~w~D~R~~~ 112 (501)
T 3g25_A 53 EIWTSVLAVMTEVINENDVRADQIAGIGITNQRETTVVWDKHTGRP----------I----------YHAIVWQSRQTQS 112 (501)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGEEEEEEEECSSCEEEEETTTCCB----------S----------SCEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccEEEEEEECCcCcEEEEECCCCeE----------C----------CCceeeccCChHH
Confidence 3899999999997654 567899999999999999999998 995 7 8999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhC--Cccccccchhcc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAG 151 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~d~s~As~ 151 (488)
+++++.+.. ..++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+||| +.+ +|+|+||+
T Consensus 113 ~~~~l~~~~-~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~l~~~~~dyl~~~LTG~~~~~-td~s~As~ 190 (501)
T 3g25_A 113 ICSELKQQG-YEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKAAHI-TDYSNASR 190 (501)
T ss_dssp HHHHHHHTT-CHHHHHHHHSCCSSTTSHHHHHHHHHHHSTTHHHHHHTTCEEEEEHHHHHHHHHTTTSCCE-EEHHHHTT
T ss_pred HHHHHHhcc-CHHHHHHHHCCCCCchhHHHHHHHHHHhCHHHHHHHhcCCeEEecHHHHHHHHhcCCCeee-eeHHHhhc
Confidence 999998864 46889999999999999999999999999999999998 77799999999999 677 99999999
Q ss_pred ccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEE
Q 011357 152 MNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLA 230 (488)
Q Consensus 152 t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~ 230 (488)
|+|||+++++||+++|+.+| + +++||+|+++++++|+++++. ++| +||||++|++|++|+++|+|++++|+++
T Consensus 191 t~l~d~~~~~W~~~ll~~~gi~--~~~LP~i~~~~~~~G~~~~~~--~~g--~g~pV~~g~~D~~aa~~g~g~~~~g~~~ 264 (501)
T 3g25_A 191 TLMFNIHDLEWDDELLELLTVP--KNMLPEVKASSEVYGKTIDYH--FYG--QEVPIAGVAGDQQAALFGQACFERGDVK 264 (501)
T ss_dssp SSSEETTTTEECHHHHHHHTCC--GGGCCEEECSEEEEEECCGGG--TTT--CCCEEEEEEEHHHHHHHHTTCCSTTCEE
T ss_pred ccCeeCCCCCCCHHHHHHhCcC--HHHCCceecCCCceeccchHH--hCC--CCCeEEEECccHHHHHHhCCCCCCCcEE
Confidence 99999999999999999999 7 799999999999999999864 455 7999999999999999999999999999
Q ss_pred EEeccccccccccC-CCCCCCccc--cccCccCCC--cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCC
Q 011357 231 ISLGTSDTVFGITD-DPEPRLEGH--VFPNPVDTK--GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNG 304 (488)
Q Consensus 231 ~s~GTs~~~~~~~~-~~~~~~~~~--~~~~~~~~g--~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~ 304 (488)
+++|||+++.+.++ +|..++.+. .++|.. ++ .|..+++++++|.+++|+++.+.. .+|+++++++++++++ +
T Consensus 265 ~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~-~ 342 (501)
T 3g25_A 265 NTYGTGGFMLMNTGDKAVKSESGLLTTIAYGI-DGKVNYALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDST-E 342 (501)
T ss_dssp EEESSSEEEEEECTTSCCCCSSSCEEEEEEEE-TTEEEEEEEEEESCSTHHHHHHHHTSCCCSSGGGHHHHHTTSSCC-T
T ss_pred EEccchhheeeecCCccccCCCCeEEEeeEec-CCccEEEEecccccHHHHHHHHHHHcCCCCcHHHHHHHHhhCCCC-C
Confidence 99999998877765 455444332 355543 55 799999999999999999998853 5789999999888774 8
Q ss_pred CeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCC
Q 011357 305 GKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPP 378 (488)
Q Consensus 305 gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~ 378 (488)
|++|+|||+|+|+|. ++||.| |++. .|+++|++||++|||||.+|++++.|++ |.++
T Consensus 343 gl~~~P~~~G~r~P~~d~~arg~~~Gl~~-----------------~~~~~~l~RAvlEgia~~~~~~~~~l~~~~g~~~ 405 (501)
T 3g25_A 343 GVYVVPAFVGLGTPYWDSEARGAIFGLTR-----------------GTEKEHFIRATLESLCYQTRDVMEAMSKDSGIDV 405 (501)
T ss_dssp TCEEECCTTCBCTTTCBTTCCEEEEEECT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred eEEEecccccCCCCCCCCCCCEEEEccCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999997 577766 6654 3599999999999999999999999974 7789
Q ss_pred CeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccC
Q 011357 379 RRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTA 458 (488)
Q Consensus 379 ~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~ 458 (488)
++|+++||++||++|+||+||++|+||.++...|++|+|||++|+++ +|.|+|++++.+ +++..++|+|++++
T Consensus 406 ~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~la~~a-----~G~~~~~~~~~~--~~~~~~~~~P~~~~ 478 (501)
T 3g25_A 406 QSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLA-----VGFWESKDDIAK--NWKLEEKFDPKMDE 478 (501)
T ss_dssp SEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHH-----TTSSSCTHHHHH--HCCEEEEECCCCCH
T ss_pred cEEEEecchhcCHHHHHHHHHHhCCceEecCCCcchHHHHHHHHHHH-----hCccCCHHHHHH--hccCCeEECCCCCH
Confidence 99999999999999999999999999999999999999999999999 999999999754 56788899999975
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 011357 459 GDQQLVSKYAVMMKKRLEIENRLVE 483 (488)
Q Consensus 459 ~~~~~~~~Y~~~y~~y~~~~~~l~~ 483 (488)
+.|+++|++|+++|+++..
T Consensus 479 ------~~~~~~y~~~~~~~~~~~~ 497 (501)
T 3g25_A 479 ------GEREKLYRGWKKAVEATQV 497 (501)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHhc
Confidence 4699999999999998764
No 10
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=2e-82 Score=676.60 Aligned_cols=424 Identities=15% Similarity=0.144 Sum_probs=378.5
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ +++.+|.+|||++||+++++||++ |+| | +|+|+|+|+|+.+
T Consensus 50 ~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~~~~v~~D~~~G~~----------l----------~~~i~W~D~R~~~ 109 (510)
T 2p3r_A 50 EIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKP----------I----------YNAIVWQCRRTAE 109 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECSSCBEEEETTTCCB----------S----------SCEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhheEEEEEeCCcCcEEEEECCCCeE----------C----------cccccccCccHHH
Confidence 3899999999997654 567899999999999999999997 995 7 8999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhC--Cccccccchhcc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAG 151 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~d~s~As~ 151 (488)
+++++.+.. ..++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+||| +.+ +|+|+||+
T Consensus 110 ~~~~l~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~l~~~~~dyl~~~LTG~~~~~-td~s~As~ 187 (510)
T 2p3r_A 110 ICEHLKRDG-LEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHV-TDYTNASR 187 (510)
T ss_dssp HHHHHHHTT-CHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHHHHTTCEEEECHHHHHHHHHTTTSCCE-EEHHHHHT
T ss_pred HHHHHHhcc-cHHHHHHHhCCCCCcccHHHHHHHHHHcCHHHHHHHhcCCeEecCHHHHHHHHhcCCCeEE-eehhHhhh
Confidence 999999864 46889999999999999999999999999999999998 77799999999999 777 99999999
Q ss_pred ccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEE
Q 011357 152 MNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLA 230 (488)
Q Consensus 152 t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~ 230 (488)
|+|||+++++||+++|+.+| + +++||+|+++++++|++++ +.+| ++||||++|++|++|+++|+|++++|+++
T Consensus 188 t~l~d~~~~~W~~~ll~~~gi~--~~~LP~i~~~~~~~G~~~~---~~lG-~~g~pV~~g~~D~~aa~~g~g~~~~g~~~ 261 (510)
T 2p3r_A 188 TMLFNIHTLDWDDKMLEVLDIP--REMLPEVRRSSEVYGQTNI---DGKG-GTRIPISGIAGDQQAALFGQLCVKEGMAK 261 (510)
T ss_dssp TSSEETTTTEECHHHHHHHTCC--GGGCCEEECSEEEEEEECT---TCTT-SCCEEEEEEEEHHHHHHHHTTCCSTTCEE
T ss_pred hccccCccCCCCHHHHHHhCCC--HHHCCceecCCCceeeech---hhcC-CCCCeEEEECchHHHHHHhcCCCCCCcEE
Confidence 99999999999999999999 7 7999999999999999986 4567 89999999999999999999999999999
Q ss_pred EEecccccccccc-CCCCCCCccc--cccCccC-CCcEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCCC
Q 011357 231 ISLGTSDTVFGIT-DDPEPRLEGH--VFPNPVD-TKGYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGG 305 (488)
Q Consensus 231 ~s~GTs~~~~~~~-~~~~~~~~~~--~~~~~~~-~g~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~g 305 (488)
+++|||+++.+.+ ++|..++.+. .+++... ++.|..+++++++|.+++|+++.+.. .+|+++++++++++ +++|
T Consensus 262 ~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g 340 (510)
T 2p3r_A 262 NTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQ-NTNG 340 (510)
T ss_dssp EEESSSEEEEEECTTCCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHHHHHHHHTSCCCCSSSCHHHHHTTSS-SCTT
T ss_pred EeecchheeEEecCCccccCCCCeeEEEeeecCCCceEEEccchhhHHHHHHHHHHHccCCCcHHHHHHHHhhCC-CCCc
Confidence 9999999766655 4565554432 3455432 35899999999999999999998853 46888999988875 6899
Q ss_pred eEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCC
Q 011357 306 KMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPR 379 (488)
Q Consensus 306 l~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~ 379 (488)
++|+|||.|+|+|. ++||.| |++. .|+++||+||++|||||.+|++++.|++ |.+++
T Consensus 341 l~~~P~~~G~r~P~~d~~arg~~~Gl~~-----------------~~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~ 403 (510)
T 2p3r_A 341 VYVVPAFTGLGAPYWDPYARGAIFGLTR-----------------GVNANHIIRATLESIAYQTRDVLEAMQADSGIRLH 403 (510)
T ss_dssp CEEECCTTCCBTTTCCTTCCEEEEEECT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred eEEeCcccCCCCCCCCCCCCEEEECCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999997 567766 6554 3599999999999999999999999975 78899
Q ss_pred eEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCC
Q 011357 380 RIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAG 459 (488)
Q Consensus 380 ~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~ 459 (488)
+|+++||++||++||||+||++|+||.++...|++|+|||++|+++ +|.|+|++++.+ +++..++|+|+++
T Consensus 404 ~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a-----~G~~~~~~~~~~--~~~~~~~~~P~~~-- 474 (510)
T 2p3r_A 404 ALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLA-----VGFWQNLDELQE--KAVIEREFRPGIE-- 474 (510)
T ss_dssp EEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHH-----HTSSSCGGGGTT--CCCEEEEECCCSC--
T ss_pred EEEEeCchhcCHHHHHHHHHHhCCceEecCCCCcHHHHHHHHHHHH-----hCccCCHHHHHH--hcCCCeEECCCCC--
Confidence 9999999999999999999999999999999999999999999999 999999998643 5677889999974
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 011357 460 DQQLVSKYAVMMKKRLEIENRLVE 483 (488)
Q Consensus 460 ~~~~~~~Y~~~y~~y~~~~~~l~~ 483 (488)
++.|+++|++|+++|++++.
T Consensus 475 ----~~~~~~~y~~~~~~~~~~~~ 494 (510)
T 2p3r_A 475 ----TTERNYRYAGWKKAVKRAMA 494 (510)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSS
T ss_pred ----HHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999764
No 11
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.7e-82 Score=674.23 Aligned_cols=421 Identities=17% Similarity=0.161 Sum_probs=369.7
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeec-CCCccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWK-KGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d-~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ +++.+|.+|||++|++++|+|| ++|+| | +|+|+|+|+|+.+
T Consensus 73 ~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~~g~~~v~~D~~~G~~----------l----------~~~i~W~D~R~~~ 132 (520)
T 4e1j_A 73 EIWQTVVSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKP----------I----------HNAIVWQDRRTAA 132 (520)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGEEEEEEEECSSCEEEEETTTCCB----------S----------SCEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCcceEEEEECCCCeE----------C----------ccccccccCCHHH
Confidence 3899999999997654 5678999999999999999999 58996 7 8999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhCC--ccccccchhcc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIGA--YACIDETDAAG 151 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~--~~~~d~s~As~ 151 (488)
+++++.+.. ..++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+|||+ .+ +|+|+||+
T Consensus 133 ~~~~l~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-td~s~As~ 210 (520)
T 4e1j_A 133 FCDKLKKKG-LEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFC-TDATNASR 210 (520)
T ss_dssp HHHHHHHTT-CHHHHHHHHSSCSSTTSHHHHHHHHHHHSTTHHHHHHTTCEEEEEHHHHHHHHHTTTCCCE-EEHHHHTT
T ss_pred HHHHHHhcc-cHHHHHHHHCCCCCchhHHHHHHHHHHcChHHHHHHhcCCeEecCHHHHHHHHhcCCCeee-ecHHHhhh
Confidence 999999874 46889999999999999999999999999999999986 667999999999996 56 99999999
Q ss_pred ccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEE
Q 011357 152 MNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLA 230 (488)
Q Consensus 152 t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~ 230 (488)
|+|||+++++||+++|+.+| + +++||+|+++++++|+++++ ||++||||++|++|++|+++|+|++++|+++
T Consensus 211 t~l~d~~~~~W~~~ll~~~gi~--~~~LP~i~~~~~~~G~~~~~-----~l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~ 283 (520)
T 4e1j_A 211 TLLYNIAENAWDDELTEVLRVP--KEMLPEVKDCAADFGVTDPS-----LFGAAIPILGVAGDQQAATIGQACFKPGMLK 283 (520)
T ss_dssp SSSEETTTTEECHHHHHHHTCC--GGGSCEEECSBSCCCBCCHH-----HHTSCCBEEEECCHHHHHHHHTTCCSTTCEE
T ss_pred hcccccccCCCCHHHHHHcCCC--HHHCCceecCCCceeeeChh-----hCCCCCeEEEECCcHHHHHHhCCCCCCCcEE
Confidence 99999999999999999999 7 79999999999999999874 4678999999999999999999999999999
Q ss_pred EEecccccccccc-CCCCCCCccc--cccCccC-CCcEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCCC
Q 011357 231 ISLGTSDTVFGIT-DDPEPRLEGH--VFPNPVD-TKGYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGG 305 (488)
Q Consensus 231 ~s~GTs~~~~~~~-~~~~~~~~~~--~~~~~~~-~g~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~g 305 (488)
+++|||+++.+.+ ++|..++.+. .+++... ++.|.++++++++|.+++|+++.+.. .+|+++++++++++ +++|
T Consensus 284 ~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g 362 (520)
T 4e1j_A 284 STYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESAD-PSQE 362 (520)
T ss_dssp EEESSSEEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHHHHHHHTTCCC-----CHHHHHTSC-TTCC
T ss_pred EEecCchheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHHHHHHHHHHcCCcccHHHHHHHHhcCC-CCCc
Confidence 9999999887777 6666555432 2444332 23799999999999999999998864 46889999998875 8999
Q ss_pred eEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-----CC
Q 011357 306 KMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-----PS 376 (488)
Q Consensus 306 l~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-----g~ 376 (488)
++|+|||+|+|+|+ +++|.| |++.+ |+++||+||++|||||.+|++++.|++ |
T Consensus 363 l~~lP~l~Ger~P~~d~~arg~~~Gl~~~-----------------~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~g- 424 (520)
T 4e1j_A 363 VYLVPAFTGLGAPHWDPDARGAIFGMTRN-----------------TGPAEFARAALEAVCYQTRDLLEAMHKDWRRNG- 424 (520)
T ss_dssp CEEECCTTCBCTTTCBTTCCCEEEEECTT-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred EEEEcCccCCCCCCCCCCCCEEEecccCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence 99999999999997 577766 66543 599999999999999999999999864 4
Q ss_pred CCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccc
Q 011357 377 PPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAV 456 (488)
Q Consensus 377 ~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~ 456 (488)
++++|+++||++||++|+||+||++|+||.++...|++|+|||++|+++ +|.|+|++++.+ +.+..++|+|++
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a-----~G~~~~~~~~~~--~~~~~~~~~P~~ 497 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSR-----AGVWPNQEAFAK--SWARDRRFEPHM 497 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHHTSCEEEESCCCHHHHHHHHHHHHH-----HTSSCCHHHHHH--TCCEEEEECCCS
T ss_pred CcceEEEeCccccCHHHHHHHHHHhCCeEEecCCCccHHHHHHHHHHHH-----cCCcCCHHHHHh--hcCCCeEECCCC
Confidence 7899999999999999999999999999999999999999999999999 999999999864 457788999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHH
Q 011357 457 TAGDQQLVSKYAVMMKKRLEIENRLV 482 (488)
Q Consensus 457 ~~~~~~~~~~Y~~~y~~y~~~~~~l~ 482 (488)
++ ++ |+++|++|+++|++..
T Consensus 498 ~~-----~~-~~~~y~~~~~~~~~~~ 517 (520)
T 4e1j_A 498 DE-----AT-RKVKLKGWRSAVKRTL 517 (520)
T ss_dssp CH-----HH-HHHHHHHHHHHHHHHH
T ss_pred CH-----HH-HHHHHHHHHHHHHHHh
Confidence 86 54 8999999999998864
No 12
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=4.9e-81 Score=668.54 Aligned_cols=424 Identities=15% Similarity=0.139 Sum_probs=368.5
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
+||++++.+++++.++ +++++|++||||+||+++|+||++ |+| | +|+|+|+|+|+.+
T Consensus 51 ~~w~~~~~~i~~~l~~~~~~~~~I~aIgis~q~~~~v~~D~~~G~p----------l----------~~ai~W~D~R~~~ 110 (526)
T 3ezw_A 51 EIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKP----------I----------YNAIVWQCRRTAE 110 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECSSCBEEEETTTCCB----------S----------SCEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhhEEEEEEeCCCCCEEEEECCCCeE----------c----------ccceecCCcchHH
Confidence 4999999999997654 788999999999999999999975 996 7 8999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhcccc----ccchhhHHHHHhCC-ccccccchhccc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERI----SVVSSFMASLLIGA-YACIDETDAAGM 152 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~----l~~~dyl~~~LTG~-~~~~d~s~As~t 152 (488)
+++++.+.. ..+.++++||+++++.++++||+|+++|+|+++++++++ ..+++||.|+|||. ...+|+|+||+|
T Consensus 111 ~~~~l~~~~-~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~i~~~L~~~Lt~g~~~~td~s~As~t 189 (526)
T 3ezw_A 111 ICEHLKRDG-LEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRT 189 (526)
T ss_dssp HHHHHHHTT-CHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHHHHTTCEEEECHHHHHHHHHTTTSCCEEEHHHHTTS
T ss_pred HHHHHHhhc-cHHHHHHHhCCCCCcccHHHHHHHHHHcCchHHHHHHHhhhhccchhHHHhhhhcCCCceEEEchhhccc
Confidence 999998874 467899999999999999999999999999999999984 45677888899863 323999999999
Q ss_pred cccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEE
Q 011357 153 NLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAI 231 (488)
Q Consensus 153 ~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~ 231 (488)
+|||+++++||+++++.+| + .++||+++++++++|+++++++.. .|+||++|++|++|+++|+|++++|++.+
T Consensus 190 ~l~d~~~~~w~~~ll~~~gi~--~~~LP~i~~~~~~~G~~~~~~~~~----~gipV~~g~gD~~aa~~G~g~~~~g~~~~ 263 (526)
T 3ezw_A 190 MLFNIHTLDWDDKMLEVLDIP--REMLPEVRRSSEVYGQTNIDGKGG----TRIPISGIAGDQQAALFGQLCVKEGMAKN 263 (526)
T ss_dssp SSEETTTTEECHHHHHHHTCC--GGGCCEEECSEEEEEEECTTCTTS----CCEEEEEEEEHHHHHHHHTTCCSTTCEEE
T ss_pred cCcCccccCcCHHHHHHcCCC--HHHCCCccccccccCccchhhhcC----CCCcEEEEcchHHHHhhhccccccceeEE
Confidence 9999999999999999999 7 899999999999999999887543 46899999999999999999999999999
Q ss_pred EeccccccccccCCCCCCCccc--c--ccCccCCCcEEEeeeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeE
Q 011357 232 SLGTSDTVFGITDDPEPRLEGH--V--FPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKM 307 (488)
Q Consensus 232 s~GTs~~~~~~~~~~~~~~~~~--~--~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~ 307 (488)
++|||+++.+.++++...+... . .+.+..++.|.++++++++|.+++|+++.+.........+.+...+++++|++
T Consensus 264 s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~gl~ 343 (526)
T 3ezw_A 264 TYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVY 343 (526)
T ss_dssp EESSSEEEEEECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHHHHHHHHTSCCCCSSSCHHHHHTTSSSCTTCE
T ss_pred EeccCeeEecccCCccccccccceeeeeeccCCcceeeeHHHHHHHHHHHHHHHHHhccccchhHHHHHHhccCCCCCeE
Confidence 9999999988888766543321 1 12222356799999999999999999998864333333344556678999999
Q ss_pred eEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeE
Q 011357 308 GFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRI 381 (488)
Q Consensus 308 ~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i 381 (488)
|+|||+|+|+|+ ++||.| |++. .|+++||+||++|||||.+|++++.|++ |.++++|
T Consensus 344 ~lP~~~G~r~P~~d~~arG~~~Glt~-----------------~~~~~~i~RAvlEgia~~~r~~le~l~~~~g~~~~~i 406 (526)
T 3ezw_A 344 VVPAFTGLGAPYWDPYARGAIFGLTR-----------------GVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHAL 406 (526)
T ss_dssp EECCTTCBCTTTCBTTCCEEEEEECT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEE
T ss_pred EeCCCCCCCCCCCCcccCeEEecCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 999999999997 567766 6554 3599999999999999999999999974 8899999
Q ss_pred EEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCch
Q 011357 382 IATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQ 461 (488)
Q Consensus 382 ~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~ 461 (488)
+++||++||++||||+|||+|+||.++...|++|+|||++|++| +|.|+|++|+.+ ..+..++|+|++++
T Consensus 407 ~v~GGgaks~~~~Qi~ADvlg~pV~~~~~~E~~alGAA~lA~~a-----~G~~~~~~e~~~--~~~~~~~~~P~~~~--- 476 (526)
T 3ezw_A 407 RVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLA-----VGFWQNLDELQE--KAVIEREFRPGIET--- 476 (526)
T ss_dssp EEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHH-----TTSSSCGGGSTT--CCCEEEEECCCSCH---
T ss_pred EEECchhhCHHHHHHHHHHHCCEEEeCCCCchHHHHHHHHHHHH-----hCCCCCHHHHHH--hcCCCeEEcCCCCH---
Confidence 99999999999999999999999999999999999999999999 999999999865 34578899999987
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 011357 462 QLVSKYAVMMKKRLEIENRL 481 (488)
Q Consensus 462 ~~~~~Y~~~y~~y~~~~~~l 481 (488)
++ |.++|++|++.+++.
T Consensus 477 --~~-~~~~y~~w~~av~r~ 493 (526)
T 3ezw_A 477 --TE-RNYRYAGWKKAVKRA 493 (526)
T ss_dssp --HH-HHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHHHHHHHHHHH
Confidence 55 667899999998764
No 13
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=4e-81 Score=666.23 Aligned_cols=415 Identities=22% Similarity=0.260 Sum_probs=369.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHH
Q 011357 1 MWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 80 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~ 80 (488)
+||++++++++++. . ..+|++||||+|++++|+||++|+| | +|+|+|+|+|+.++++
T Consensus 47 ~~~~~i~~~l~~~~--~-~~~I~~Igis~q~~~~v~~D~~G~p----------l----------~~~i~W~D~R~~~~~~ 103 (515)
T 3i8b_A 47 YWWSAFQEAAEQAG--G-LDDVSALAVGGQQHGMVILDNQGNV----------I----------RDAMLWNDTSSAPQAA 103 (515)
T ss_dssp HHHHHHHHHHHHTT--C-STTEEEEEEEECSSCBEEECTTSCB----------C----------SCEECTTCCTTHHHHH
T ss_pred HHHHHHHHHHHhcC--C-ccCceEEEEeCCcceEEEECCCCCC----------c----------CCcceecCCCHHHHHH
Confidence 48999988887653 2 5789999999999999999999996 7 8999999999999999
Q ss_pred HHHHHhCC-H--------------HHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCC-----
Q 011357 81 EIEKAVGG-A--------------LELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGA----- 140 (488)
Q Consensus 81 ~~~~~~~~-~--------------~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~----- 140 (488)
++.+.++. . ++++++||+++++.++++||+|+++|+||+|+++.+|++++|||.|+|||+
T Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~ 183 (515)
T 3i8b_A 104 ALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKIAAICLPHDWLSWRIAGYGPVAE 183 (515)
T ss_dssp HHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCSEEECHHHHHHHHHTTCCCCCT
T ss_pred HHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHHHHHHHHHHcChHHHHHHheecCHHHHHHHHhcCCCcccc
Confidence 99988653 2 789999999999999999999999999999999999999999999999998
Q ss_pred --------ccccccchhccccccccCCCCccHHHHHHc-C-cch---------HhhcCCcccCCcccccccHHHHHHcCC
Q 011357 141 --------YACIDETDAAGMNLMDIRQRVWSKIVLEAT-A-PSL---------EEKLGKLAPAHAVAGCIAPYFVERFHF 201 (488)
Q Consensus 141 --------~~~~d~s~As~t~l~d~~~~~W~~~ll~~~-g-~~~---------~~~LP~i~~~~~~~G~v~~~~A~~~GL 201 (488)
.+ +|+|+||+|+|||+++++||+++|+.+ | +++ .++||+|+++++++|+|++++|+++||
T Consensus 184 ~~~~~~~~~~-td~s~As~t~l~d~~~~~W~~~ll~~~~gi~~~~~~~~~~~~~~~LP~i~~~~~~~G~v~~~~A~~~Gl 262 (515)
T 3i8b_A 184 GEDAHLEALF-TDRSDASGTIYYDAASNEYRRDLIAMVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNV 262 (515)
T ss_dssp TSCCCGGGCE-EEHHHHTTSSSEETTTTEECHHHHHHHHHHHHCHHHHHHHHHHSBCCEEECTTCCCSSCCCTTTTTTTS
T ss_pred ccccccccee-ecHHHhhcccCeeCCcCccCHHHHHhhcCCCcccccccccchHHHCCCCcCCcCcccCcCHHHHHHhCC
Confidence 46 999999999999999999999999998 8 521 478999999999999999999999999
Q ss_pred CCCCeEEeccChhHHhhhccCCCCCCcEEEEeccccccccccCCCCCCCcccc--ccCccCCCcEEEeeeeechhhHHHH
Q 011357 202 NKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHV--FPNPVDTKGYMIMLVYKNASLTRED 279 (488)
Q Consensus 202 ~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~g~~~~w 279 (488)
++||||++|++|++|+++|+| +++|++++++|||+++.+++++|.+++.+.. +++ .+|.|+.+++++++|.+++|
T Consensus 263 ~~g~pV~~g~~D~~aa~lG~g-~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~gg~~l~w 339 (515)
T 3i8b_A 263 EGGCLLAPGGGDNAMASLGLG-MAVGDVSISLGTSGVAAAISENPTYDLTGAVSGFAD--CTGHYLPLACTINGSRILDA 339 (515)
T ss_dssp TTCCEECCCEEHHHHHHHHTT-CCTTEEEEEESSSEEEEECBSSCCCCTTSCSEEEEC--SSSSEEEEEEESCSTHHHHH
T ss_pred CCCCeEEEECchHHHHHhhCC-CCCCcEEEEechhhhhhcccCccccCCCCcEEeeec--CCCCEEEeeecccHHHHHHH
Confidence 999999999999999999999 8999999999999999999999887765433 444 27899999999999999999
Q ss_pred HHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCC--CCCcceeeeecccccccccCcccccccCC-ChHHHHHH
Q 011357 280 VRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPP--LPVGFHRYILENFEGETLDGVNEVEVKEF-DPPSEVRA 356 (488)
Q Consensus 280 ~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~--~a~G~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~rA 356 (488)
+++.+.. +|++|++++++++||++|++|+||+.|+|+|. +++|.| +|++ ..| +++|++||
T Consensus 340 ~~~~~~~-~~~~l~~~a~~~~~g~~gl~~lP~~~Ger~P~~~~arg~~------------~Gl~----~~~~~~~~l~RA 402 (515)
T 3i8b_A 340 GRAALGV-DYDELAKLAFASKPGANGITLVPYFDGERTPNRPNATATF------------SGMT----LANTTRENLARA 402 (515)
T ss_dssp HHHHHTC-CHHHHHHHHHHSCTTGGGCEEECCTTCBTTTTBTTCCCEE------------ESCC----TTTCSHHHHHHH
T ss_pred HHHHhCC-CHHHHHHHHHhCCCCCCCeEEecCCCCCcCCCCcCcceEE------------ecCC----CCCCCHHHHHHH
Confidence 9998854 79999999999999999999999999999996 466655 3443 346 99999999
Q ss_pred HHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCC
Q 011357 357 LVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFV 435 (488)
Q Consensus 357 vlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~ 435 (488)
++|||||.+|++++.|++ |.++++|+++||++||++|+||+||++|+||.++...|++|+|||++|+++ +|.+.
T Consensus 403 vlEgia~~~r~~l~~l~~~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a-----~G~~~ 477 (515)
T 3i8b_A 403 FVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSILGMDVTRPATDEYVAIGAARQAAWV-----LSGET 477 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEECCCCHHHHHHHHHHHHH-----HHCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCEEEEECchhcCHHHHHHHHHHhCCceEecCCcccHHHHHHHHHHHH-----cCCCC
Confidence 999999999999999986 888999999999999999999999999999999999999999999999999 89888
Q ss_pred CHHHHHHhhcccCCceeeccccCCchhhHHHHHHHH
Q 011357 436 PISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMM 471 (488)
Q Consensus 436 ~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y 471 (488)
++++.. .....+|+|+++ +.+.++|++.|
T Consensus 478 ~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~ 506 (515)
T 3i8b_A 478 EPPAWQ----LTIDGVETGEPT---EAVYEAYAKAR 506 (515)
T ss_dssp SCCCCC----CCEEEEECCCCC---HHHHHHHHHHH
T ss_pred ChhHhh----hhccccCCCCcc---HHHHHHHHHHh
Confidence 776421 234567788864 35566666665
No 14
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=100.00 E-value=3.8e-80 Score=657.80 Aligned_cols=420 Identities=17% Similarity=0.175 Sum_probs=378.9
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQ 78 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~ 78 (488)
.||++++++++++.++ +++.+|.+||||+|++++++||++|+| | +|+|+|+|.|+.++
T Consensus 50 ~~~~~~~~~i~~~~~~~~~~~~~i~~Igis~~~~~~v~~D~~G~~----------l----------~~~i~w~D~R~~~~ 109 (497)
T 2zf5_O 50 EIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQRETTLVWDKDGKP----------L----------YNAIVWQCRRTAEM 109 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECSSCEEEECTTCCB----------S----------SCEECTTCCTTHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCCcEEEECCCCCC----------c----------ccceeecccCcHHH
Confidence 3899999999997654 667789999999999999999999995 7 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhCCccccccchhccccc
Q 011357 79 CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIGAYACIDETDAAGMNL 154 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~~~~~d~s~As~t~l 154 (488)
++++.+. . .++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+|||+.+ +|+|+||+|++
T Consensus 110 ~~~l~~~-~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~-td~s~As~t~l 186 (497)
T 2zf5_O 110 VEEIKRE-Y-GTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTGEHV-TDYSNASRTML 186 (497)
T ss_dssp HHHHHHH-H-HHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHHHTTCCEEEEHHHHHHHHHHSCCE-EEHHHHTTSSS
T ss_pred HHHHHhh-h-HHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHhcCCCEEEcHHHHHHHHHhCCee-eeHHHhhhhcC
Confidence 9999876 3 4789999999999999999999999999999999998 88999999999999988 99999999999
Q ss_pred cccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEEEEe
Q 011357 155 MDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISL 233 (488)
Q Consensus 155 ~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~ 233 (488)
||+++++||+++|+.+| + .++||+|+++++++|+|+++ .+| +|+||++|++|++|+++|+|++++|++++++
T Consensus 187 ~d~~~~~W~~~ll~~~gi~--~~~lP~i~~~~~~~G~~~~~---~~g--~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~ 259 (497)
T 2zf5_O 187 FNIKKLDWDDELLELFDIP--ESVLPEVRESSEVYGYTKKE---LLG--AEIPVSGDAGDQQAALFGQAAFEAGMVKATY 259 (497)
T ss_dssp EETTTTEECHHHHHHTTCC--GGGCCEEECSEEEEEECCHH---HHS--SCCEEEEEEEHHHHHHHHTTCCSTTCEEEEE
T ss_pred ccCCCCCcCHHHHHHcCcC--HHHCCCcCCCCCeeeecCHH---HcC--CCCeEEEEccHHHHHHHhCCCCCCCcEEEEc
Confidence 99999999999999999 7 79999999999999999987 588 7999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCcc--ccccCccCCC--cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCCCeEe
Q 011357 234 GTSDTVFGITDDPEPRLEG--HVFPNPVDTK--GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMG 308 (488)
Q Consensus 234 GTs~~~~~~~~~~~~~~~~--~~~~~~~~~g--~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~ 308 (488)
|||+++.+.+++|..++.+ ..++|.. ++ .|+.+++++++|.+++|+++.+.. .+|+++++++++++ +++|++|
T Consensus 260 GTs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~a~~~~-~~~gl~~ 337 (497)
T 2zf5_O 260 GTGSFILVNTDKMVLYSDNLLTTIAWGL-NGRVSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLE-SNEGVYF 337 (497)
T ss_dssp SSSEEEEEEEETCCCCCTTSEEEEEEEE-TTEEEEEEEEEESCSHHHHHHHHHTSCCCSCGGGHHHHHTTSS-SCTTCEE
T ss_pred chhheeeEECCCCccCCCCcEEEEEEEc-CCCCEEEEechhhhHHHHHHHHHHHhCCCCcHHHHHHHHhhCC-CCCceEE
Confidence 9999999988887655433 2355543 44 799999999999999999998753 46888999888876 6899999
Q ss_pred EeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEE
Q 011357 309 FYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIA 383 (488)
Q Consensus 309 lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~ 383 (488)
+||+.|+|+|. +++|.| |++. .|+++|++||++||+||.+|++++.|++ + ++++|++
T Consensus 338 ~P~~~G~r~P~~d~~arg~~~Gl~~-----------------~~~~~~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~ 399 (497)
T 2zf5_O 338 VPAFVGLGAPYWDQFARGIIIGITR-----------------GTGREHLARATLEAIAYLTRDVVDEMEKLV-QIKELRV 399 (497)
T ss_dssp ECCTTCBCTTTCBTTCCEEEEEECT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEE
T ss_pred ecCcCCCCCCCCCCCCCEEEEeCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEE
Confidence 99999999997 577766 6544 3599999999999999999999999987 7 8899999
Q ss_pred ecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhh
Q 011357 384 TGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQL 463 (488)
Q Consensus 384 ~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~ 463 (488)
+||++||++|+||+||++|+||.++...|++|+|||++|+++ +|.|++++++.+ +.+..++|+|+++
T Consensus 400 ~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~-----~g~~~~~~~~~~--~~~~~~~~~P~~~------ 466 (497)
T 2zf5_O 400 DGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLA-----VDYWADTREIAE--LWKAERIFEPKMD------ 466 (497)
T ss_dssp ESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHH-----TTSSCCHHHHHT--TCCEEEEECCCCC------
T ss_pred eCccccCHHHHHHHHhhcCCeEEEcCCCcchHHHHHHHHHHH-----hCccCCHHHHHH--hcCCCeEECCCcc------
Confidence 999999999999999999999999999999999999999999 999999999863 4567788999985
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011357 464 VSKYAVMMKKRLEIENRLVE 483 (488)
Q Consensus 464 ~~~Y~~~y~~y~~~~~~l~~ 483 (488)
.+.|+++|++|+++|+++++
T Consensus 467 ~~~y~~~y~~~~~~~~~~~~ 486 (497)
T 2zf5_O 467 EKTRERLYKGWKEAVKRAMG 486 (497)
T ss_dssp HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 38899999999999998764
No 15
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=100.00 E-value=1.6e-80 Score=661.48 Aligned_cols=422 Identities=16% Similarity=0.166 Sum_probs=378.2
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ +++.+|.+|||++|++++++||++ |+| + +|+|+|+|.|+.+
T Consensus 49 ~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~g~~~v~vD~~~G~~----------l----------~~~i~w~D~R~~~ 108 (504)
T 2d4w_A 49 QIWNNVREVVGLALTRGNLTHEDIAAVGITNQRETAVVWDKTTGKP----------V----------YNAIVWQDTRTQK 108 (504)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECSSCBEEEETTTCCB----------S----------SCEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccEEEEEEeCCCCeEEEEECCCCCC----------c----------cccceecccChHH
Confidence 3899999999997654 556789999999999999999997 995 6 7999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhC--C---ccccccch
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--A---YACIDETD 148 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~---~~~~d~s~ 148 (488)
+++++.+..+ .++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+||| + .+ +|+|+
T Consensus 109 ~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~-~d~s~ 186 (504)
T 2d4w_A 109 IVDELGGDEG-AEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTEGGVHV-TDVTN 186 (504)
T ss_dssp HHHHHHCSSC-GGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHHHHHTCEEEECHHHHHHHHHTTTTTTCCCE-EEHHH
T ss_pred HHHHHHhhcc-hHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHHHhcCCeEEecHHHHHHHHhcCCCcCCcee-eehhh
Confidence 9999986554 5779999999999999999999999999999999998 99999999999999 6 77 99999
Q ss_pred hccccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCC
Q 011357 149 AAGMNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSG 227 (488)
Q Consensus 149 As~t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g 227 (488)
||+|++||+++++||+++|+.+| + +++||+|+++++++|+|+++ +.+| + |||++|++|++|+++|+|++++|
T Consensus 187 As~t~l~d~~~~~W~~~ll~~~gi~--~~~lP~i~~~~~~~G~~~~~--~~~G--~-~pV~~g~~D~~aa~~g~g~~~~g 259 (504)
T 2d4w_A 187 ASRTMLMDLDTLSWREDIAADMGIP--LSMLPDIRSSSEVYGHGRPR--GLVP--G-VPIAGILGDQQAATFGQACFEVG 259 (504)
T ss_dssp HTTTTCEETTTTEECHHHHHHTTCC--GGGSCEEECSEEEEEECCTT--SSST--T-CEEEEEEEHHHHHHHHTTCCSTT
T ss_pred hhhhcCccCCCCccCHHHHHHhCCC--HHHCCCccCCccceeccchH--HhCC--C-CeEEEECCcHHHHHhhCCCCCCC
Confidence 99999999999999999999999 7 79999999999999999985 3678 6 99999999999999999999999
Q ss_pred cEEEEeccccccccccC-CCCCCCcc--ccccCccCCC---cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCC
Q 011357 228 DLAISLGTSDTVFGITD-DPEPRLEG--HVFPNPVDTK---GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTP 300 (488)
Q Consensus 228 ~~~~s~GTs~~~~~~~~-~~~~~~~~--~~~~~~~~~g---~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~ 300 (488)
++++|+|||+++.++++ +|..++.+ ..++|.. +| .|+.+++++++|.+++|+++.+.. .+|++|++++++++
T Consensus 260 ~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~ 338 (504)
T 2d4w_A 260 QAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKI-GDAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQ 338 (504)
T ss_dssp EEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECC-TTSCCEEEEEEEESCSHHHHHHHHHTTCTTTTCSCTHHHHTTSS
T ss_pred cEEEEcchhheeeeecCCccccCCCCcEEEEEEEc-CCCCceEEEcchhhhHHHHHHHHHHHhCCCCCHHHHHHHHhhCC
Confidence 99999999999999885 57665533 2355543 55 899999999999999999998752 45788899888876
Q ss_pred CCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--
Q 011357 301 PLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-- 374 (488)
Q Consensus 301 ~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-- 374 (488)
+++|++|+||+.|+|+|. +++|.| |++. .|+++|++||++|||||.+|++++.|++
T Consensus 339 -~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~-----------------~~~~~~l~rAvlEgia~~~~~~~~~l~~~~ 400 (504)
T 2d4w_A 339 -DNGGAYFVPAFSGLFAPYWRPDARGALVGLTR-----------------YVNRNHIARAALEATAFQSREVVDAMNADS 400 (504)
T ss_dssp -SCTTCEEECTTCCCSTTTCCCCSCEEEEEECS-----------------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEecCCCCCCCCCCCCCCCEEEEeCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999997 577766 6554 3599999999999999999999999974
Q ss_pred CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeec
Q 011357 375 PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKL 454 (488)
Q Consensus 375 g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P 454 (488)
|.++++|+++||++||++||||+||++|+||.++...|++|+|||++|+++ +|.|++++++.+ +.+..++|+|
T Consensus 401 g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~-----~G~~~~~~~~~~--~~~~~~~~~P 473 (504)
T 2d4w_A 401 GVDLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIA-----VGFWKGEQDVID--NWAEDKRWSP 473 (504)
T ss_dssp SCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHH-----HTSSCSHHHHHH--HCCEEEEECC
T ss_pred CCCcceEEEeCCcccCHHHHHHHHHHhCCeEEeCCCCcchHHHHHHHHHhh-----cCccCCHHHHHh--hcCCCeEEcc
Confidence 778899999999999999999999999999999999999999999999999 999999999864 4567788999
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011357 455 AVTAGDQQLVSKYAVMMKKRLEIENRLVE 483 (488)
Q Consensus 455 ~~~~~~~~~~~~Y~~~y~~y~~~~~~l~~ 483 (488)
++++ +.|+++|++|+++|+++.+
T Consensus 474 ~~~~------~~y~~~y~~~~~~~~~~~~ 496 (504)
T 2d4w_A 474 SMES------GERERLYRNWKKAVTKTME 496 (504)
T ss_dssp CSCH------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCH------HHHHHHHHHHHHHHHHHhc
Confidence 9853 8999999999999999875
No 16
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=100.00 E-value=1.9e-79 Score=653.29 Aligned_cols=421 Identities=15% Similarity=0.129 Sum_probs=376.9
Q ss_pred CHHHHHHHHHHHHhhc----CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCc
Q 011357 1 MWIEALDLMLQKLSKS----LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSST 75 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~----~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra 75 (488)
.||++++++++++.++ +++.+|.+|||++|++++++||++ |+| + +|+|+|+|.|+
T Consensus 51 ~~~~~i~~~i~~~~~~~~~~~~~~~i~~Igis~~~~~~~~~D~~~G~~----------l----------~~~i~w~D~r~ 110 (503)
T 2w40_A 51 EIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKP----------L----------YNAIVWLDTRV 110 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEECSSCEEEEETTTCCB----------S----------SCEECTTCCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCcceEEEEECCCCcC----------C----------ccceeecccCc
Confidence 3899999999987542 456789999999999999999998 995 6 79999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhC-Cccccccchhc
Q 011357 76 TAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG-AYACIDETDAA 150 (488)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG-~~~~~d~s~As 150 (488)
.++++++.+. +..++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+||| +.+ +|+|+||
T Consensus 111 ~~~~~~l~~~-~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~-~d~s~As 188 (503)
T 2w40_A 111 EELVTEFSAK-YNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCY-TDVTNAS 188 (503)
T ss_dssp HHHHHHHHHH-SCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHHHHHHHHTTCEEEEEHHHHHHHHHHTSCCE-EEHHHHT
T ss_pred HHHHHHHHhc-cchHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhcCCeEEECHHHHHHHHHcCCCcc-ccHHHhh
Confidence 9999999876 446789999999999999999999999999999999999 99999999999999 477 9999999
Q ss_pred cccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCC--CCeEEeccChhHHhhhccCCCCCC
Q 011357 151 GMNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNK--NCLVVQWSGDNPNSLAGLTLSTSG 227 (488)
Q Consensus 151 ~t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~--g~pV~~g~~D~~aa~lg~g~~~~g 227 (488)
+|++||+++++||+++|+.+| +. .++||+|+++++++|+|+++ .+| + ||||++|++|++|+++|+|++++|
T Consensus 189 ~t~l~d~~~~~W~~~ll~~~gi~~-~~~lP~i~~~~~~~G~~~~~---~~g--~~~g~pV~~g~~D~~aa~~g~g~~~~g 262 (503)
T 2w40_A 189 RTLLMDINTLQWDEKMCKIFNITN-MSVLPEIKSNCSNFGLVKSE---HVP--DYLNIPITGCIGDQQSACIGQAIFDEG 262 (503)
T ss_dssp TTTCBCTTTCSBCHHHHHHTTCCC-GGGSCEEECSEEEEEECCCT---TSG--GGTTCEEEEEEEHHHHHHHHTTCCSTT
T ss_pred hhcCccCCCCccCHHHHHHcCCCh-HHHCCCccCCcCceeeccHH---HcC--CCCCceEEEECchHHHHHHhCCCCCCC
Confidence 999999999999999999999 52 47899999999999999987 577 7 999999999999999999999999
Q ss_pred cEEEEeccccccccccC-CCCCCCcc--ccccCccCCC----cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcC
Q 011357 228 DLAISLGTSDTVFGITD-DPEPRLEG--HVFPNPVDTK----GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQT 299 (488)
Q Consensus 228 ~~~~s~GTs~~~~~~~~-~~~~~~~~--~~~~~~~~~g----~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~ 299 (488)
++++|+|||+++.++++ +|..++.. ..++|.+ +| .|..+++++++|.+++|+++ ++. .+|++|+++++++
T Consensus 263 ~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~~ 340 (503)
T 2w40_A 263 EAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKF-NDNDKPKYALEGSIGTAGSGVSWLLK-NKLIDDPSEASDIMEKC 340 (503)
T ss_dssp CEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECC-STTSCCEEEEEEEESCSHHHHHHHHH-TTSSSCGGGHHHHHHHC
T ss_pred cEEEEechhheeeeecCCccccCCCCceeEEEeec-CCCCCceEEEechhhhhHhHHHHHHH-hCCcCCHHHHHHHHhhC
Confidence 99999999999999886 57665433 2456643 45 89999999999999999999 753 4688999999888
Q ss_pred CCCCCCeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-
Q 011357 300 PPLNGGKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL- 374 (488)
Q Consensus 300 ~~g~~gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~- 374 (488)
+ +++|++|+||+.|+|+|. +++|.| |++. .|+++|++||++|||||.+|++++.|++
T Consensus 341 ~-~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~-----------------~~~~~~l~rAvlEgia~~~~~~~~~l~~~ 402 (503)
T 2w40_A 341 E-NTTGVIFVPAFSGLYAPRWRSDARASIYGMTF-----------------NTERSHIVRALLEGIAFQLNEIVDSLTSD 402 (503)
T ss_dssp C-SCTTCEEECCTTCBCTTTCBTTCCEEEEEECT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCEEEecCCCCCCCCCCCCCCcEEEECCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 699999999999999997 577766 6544 3599999999999999999999999974
Q ss_pred -CCCC-CeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCcee
Q 011357 375 -PSPP-RRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSC 452 (488)
Q Consensus 375 -g~~~-~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~ 452 (488)
|.++ ++|+++||++||++|+||+||++|+||.++...|++|+|||++|+++ +|.|++++++.+. +.+..++|
T Consensus 403 ~g~~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~~~~e~~alGaA~la~~~-----~G~~~~~~~~~~~-~~~~~~~~ 476 (503)
T 2w40_A 403 MGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLE-----VKIWDSLDSVKSL-LRRSDAVF 476 (503)
T ss_dssp HTCSCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHH-----TTCSSCHHHHHHH-HTCEEEEE
T ss_pred cCCCccceEEEeCccccCHHHHHHHHHHHCCeEEecCCCcchHHHHHHHHHHH-----hCccCCHHHHHHh-ccCCCcEE
Confidence 7778 99999999999999999999999999999999999999999999999 9999999998763 46677899
Q ss_pred eccccCCchhhHHHHHHHHHHHHHHHHHH
Q 011357 453 KLAVTAGDQQLVSKYAVMMKKRLEIENRL 481 (488)
Q Consensus 453 ~P~~~~~~~~~~~~Y~~~y~~y~~~~~~l 481 (488)
+|+++ .+.|+++|++|+++|++.
T Consensus 477 ~P~~~------~~~y~~~y~~~~~~~~~~ 499 (503)
T 2w40_A 477 HSKMD------DKKRKKKTSEWNKAVERT 499 (503)
T ss_dssp CCCSC------HHHHHHHHHHHHHHHHHH
T ss_pred ccCCC------HHHHHHHHHHHHHHHHHH
Confidence 99985 389999999999999875
No 17
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-79 Score=652.18 Aligned_cols=420 Identities=18% Similarity=0.191 Sum_probs=376.3
Q ss_pred CHHHHHHHHHHHHhhc--CCCCCeeEEEEcccccceeeecCC-CccccccCCCCCcccccccccCCCCCCccccCCCcHH
Q 011357 1 MWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 77 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~--~~~~~I~aIgis~~~~~~v~~d~~-G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~ 77 (488)
.||++++++++++.++ +++.+|.+|||++|++++++||++ |+| + +|+|+|+|.|+.+
T Consensus 49 ~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~~~~~~~vD~~~G~~----------l----------~~~i~w~D~R~~~ 108 (495)
T 2dpn_A 49 EIWETTLWAAREVLRRAGAEAGEVLALGITNQRETTLLWDRKTGKP----------L----------HNAIVWQDRRTTP 108 (495)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGCCEEEEEECSSCBEEEETTTCCB----------S----------SCEECTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCCccEEEEECCCCcC----------C----------ccceeecccChHH
Confidence 3899999999997654 556789999999999999999997 995 6 7999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccc----cccchhhHHHHHhC--Cccccccchhcc
Q 011357 78 QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAG 151 (488)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~d~s~As~ 151 (488)
+++++.+. +..++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+||| +.+ +|+|+||+
T Consensus 109 ~~~~l~~~-~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~-~d~s~As~ 186 (495)
T 2dpn_A 109 LCEALRAK-GLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGGKVHA-TDPTNASR 186 (495)
T ss_dssp HHHHHHHT-TCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHHHHHTCEEEECHHHHHHHHHTTTSCCE-ECHHHHTT
T ss_pred HHHHHHhc-cchhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHhcCCcEEECHHHHHHHHhcCCCeEE-EehHHhHh
Confidence 99999875 445789999999999999999999999999999999998 99999999999999 787 99999999
Q ss_pred ccccccCCCCccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCCCcEE
Q 011357 152 MNLMDIRQRVWSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLA 230 (488)
Q Consensus 152 t~l~d~~~~~W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~g~~~ 230 (488)
|++||+++++||+++|+.+| + +++||+|+++++++|+|+++ .+| +||||++|++|++|+++|+|++++|+++
T Consensus 187 t~l~d~~~~~W~~~ll~~~gi~--~~~lP~i~~~~~~~G~~~~~---~~G--~g~pV~~g~~D~~aa~~g~g~~~~g~~~ 259 (495)
T 2dpn_A 187 TLLFNLHTLAWDPELLEALGIP--AALLPEVRPSDGDFGETLPE---LLG--APVPIRGVLGDQQAALFGQAALGGGEGK 259 (495)
T ss_dssp SSSEETTTTEECHHHHHHTTCC--STTCCEECCTTSCCCBCCHH---HHS--SCCBEEEEEEHHHHHHHHTTCCSTTCEE
T ss_pred hcCccCccCCcCHHHHHHcCCC--HHHCCCccCCCCeeEeccHH---HcC--CCCeEEEECcHHHHHHHhCCCCCCCcEE
Confidence 99999999999999999999 7 78999999999999999987 588 7999999999999999999999999999
Q ss_pred EEeccccccccccC-CCCCCCcc--ccccCccCCC--cEEEeeeeechhhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCC
Q 011357 231 ISLGTSDTVFGITD-DPEPRLEG--HVFPNPVDTK--GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNG 304 (488)
Q Consensus 231 ~s~GTs~~~~~~~~-~~~~~~~~--~~~~~~~~~g--~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~ 304 (488)
+|+|||+++.+.++ +|..++.+ ..++|.. ++ .|..+++++++|.+++|+++ ++. .+|+++++++++++ +++
T Consensus 260 ~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~~~-~~~ 336 (495)
T 2dpn_A 260 CTYGTGAFLLLNTGKRPVLSEKGLLATVAWSL-GGRATYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVE-DTG 336 (495)
T ss_dssp EEESSSEEEEEECTTSCCCCSSSCEEEEEEEE-TTEEEEEEEEEESCSHHHHHHHHH-TTSSSSTTTHHHHHHTCS-CCS
T ss_pred EEccHhhhhhhhcCCccccCCCCceEEEEEEc-CCCCEEEEechHHhHHHHHHHHHH-cCCccCHHHHHHHHhhCC-CCC
Confidence 99999999988886 46655433 2355543 44 79999999999999999999 753 46889999998876 689
Q ss_pred CeEeEeccCCCCCCC---CCCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCC
Q 011357 305 GKMGFYYKEHEILPP---LPVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPP 378 (488)
Q Consensus 305 gl~~lP~l~G~r~P~---~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~ 378 (488)
|++|+||+.|+|+|. +++|.| |++. .|+++|++||++||+||.+|++++.|++ |.++
T Consensus 337 gl~~~P~~~G~r~P~~d~~arg~~~Gl~~-----------------~~~~~~~~rAvlEgia~~~~~~~~~l~~~~g~~~ 399 (495)
T 2dpn_A 337 DVYFVPAFTGLGAPYWDPYARGTLLGLTR-----------------GTSRAHLARAALEGVAFQVRDVVLAMEEEAGVRL 399 (495)
T ss_dssp SCEEECCTTCBCTTTCBTTCCEEEEEECT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred cEEEecCCCCCCCCCCCCCCceEEEecCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999997 567766 6543 3599999999999999999999999964 7788
Q ss_pred CeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccC
Q 011357 379 RRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTA 458 (488)
Q Consensus 379 ~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~ 458 (488)
++|+++||++||++|+||+||++|+||.++...|++|+|||++|+++ +|.| |++++.+ +.+..++|+|+++
T Consensus 400 ~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~~~~e~~alGaA~la~~a-----~G~~-~~~~~~~--~~~~~~~~~P~~~- 470 (495)
T 2dpn_A 400 KVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVG-----AGAL-SPEDVAG--RFREAERFLPTMP- 470 (495)
T ss_dssp CCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHH-----HTSC-CHHHHHH--HCCEEEEECCCSC-
T ss_pred cEEEEecccccCHHHHHHHHHHhCCeeEecCCcccHHHHHHHHHHhh-----cCcC-CHHHHHH--hcCCCeEEccCCC-
Confidence 99999999999999999999999999999999999999999999999 9999 9999864 4567788999985
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 011357 459 GDQQLVSKYAVMMKKRLEIENRLVE 483 (488)
Q Consensus 459 ~~~~~~~~Y~~~y~~y~~~~~~l~~ 483 (488)
.+.|+++|++|+++|+++.+
T Consensus 471 -----~~~y~~~~~~~~~~~~~~~~ 490 (495)
T 2dpn_A 471 -----EGRREALYRRWREAVERAKG 490 (495)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSS
T ss_pred -----HHHHHHHHHHHHHHHHHHhh
Confidence 38899999999999998764
No 18
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=1.1e-71 Score=587.84 Aligned_cols=401 Identities=15% Similarity=0.078 Sum_probs=328.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHH
Q 011357 1 MWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 80 (488)
Q Consensus 1 ~ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~ 80 (488)
.||++++++++++. + .+|++||||+|++++|+|| +|+| | +|+|+|+|+|+.++++
T Consensus 52 ~~~~~~~~~i~~~~-~---~~I~aIgis~~~~~~v~~D-~G~p----------l----------~~ai~w~D~R~~~~~~ 106 (482)
T 3h6e_A 52 DTGRWLLDVLSRYA-D---HPVTTIVPVGHGAGIAALT-DGRL----------A----------FPPLDYEQSIPEAVMA 106 (482)
T ss_dssp HHHHHHHHHHHHTT-T---SCCCEEEEEECSSCEEEEE-TTEE----------C----------SCCBCTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHH-h---cCCCEEEEecCcCCEEEEC-CCCE----------e----------ccccccCCcccHHHHH
Confidence 38999999998875 2 6899999999999999999 9996 7 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHhCCCCCCC--ChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccch-hcccccccc
Q 011357 81 EIEKAVGGALELSKLTGSRGYER--FTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETD-AAGMNLMDI 157 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~tG~~~~~~--~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~-As~t~l~d~ 157 (488)
++.+..+ .+++||++++++ ++++||+|+++|+||+|+|++ |++++|||.|+|||+.+ +|+|+ ||+|+|||+
T Consensus 107 ~l~~~~~----~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe~~~~~~-~l~~~dyl~~~LTG~~~-td~s~~As~t~l~d~ 180 (482)
T 3h6e_A 107 DYRSQRD----PFARTGSPALPDGLNIGSQLWWLDQLHPDVMANAT-LLPWAQYWAWFLTGRAV-SEVTSLGCHSDLWDP 180 (482)
T ss_dssp HHHTTCC----CHHHHCCCCCSTTSSHHHHHHHHHHHSHHHHHSCE-EEEHHHHHHHHTTSCCC-EEHHHHTTTCSSEET
T ss_pred HHHhhCh----HHHHhCCCCCCCchhHHHHHHHHHHcCchhhhcCE-EEccHHHHHHHHhCCee-eecchhhhccCCccC
Confidence 9987542 389999999997 899999999999999999999 99999999999999998 99998 899999999
Q ss_pred CCCCccHHHHHHcCcchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccChhHHhhhc---cCCCCCCc-EEEEe
Q 011357 158 RQRVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG---LTLSTSGD-LAISL 233 (488)
Q Consensus 158 ~~~~W~~~ll~~~g~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg---~g~~~~g~-~~~s~ 233 (488)
++++|+ ++|+.+|. +++||+|+++++++|+|++++|+++||++|+||++|+||++|+++| +|++++|+ +++++
T Consensus 181 ~~~~W~-~ll~~~gi--~~~LP~v~~~~~~~G~l~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~~g~g~~~~g~~~~~s~ 257 (482)
T 3h6e_A 181 QDGDFS-PMAKRLGW--AARFAPIVRAGDTVGALLPAIAERTGLSPDVQVLAGLHDSNAALLAARGFAEIADNEATVLST 257 (482)
T ss_dssp TTTEEC-HHHHHTTC--GGGBCCEECTTSEEEECCHHHHHHHTCCTTCEEECCEEHHHHHHHHHTTSTTTTTSSEEEEEC
T ss_pred CcCcHH-HHHHHcCC--HHhCCCCcCCCceeeeeCHHHHHHhCCCCCCEEEEeCcHHHHHHhhhhccCCcCCCCEEEEEC
Confidence 999999 59999995 3899999999999999999999999999999999999999999999 99999997 68999
Q ss_pred ccccccccccC---C-CCCCCccccccCccCCCcEEEeeeeechhhHHHHHHHHhcC--c-cHHHHHHHHhcCCCCCCCe
Q 011357 234 GTSDTVFGITD---D-PEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE--K-SWDVFNKYLQQTPPLNGGK 306 (488)
Q Consensus 234 GTs~~~~~~~~---~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~~--~-~~~~l~~~a~~~~~g~~gl 306 (488)
|||.++..+.+ + |..++....+++.. ...|.+.+...++|.+++|+++.... + .++..+.+++..++|++|+
T Consensus 258 GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~a~~~~~g~~Gl 336 (482)
T 3h6e_A 258 GTWFIAMRLPATPVDTATLPEARDCLVNVD-VHGRPVPSARFMGGREIETLIEIDTRRVDIKPDQPALLAAVPEVLRHGR 336 (482)
T ss_dssp SSSEEEEEECSSCCCGGGCCGGGTEEEEEC-TTSCEEEEEEECHHHHHHHHHCSGGGCTTCGGGHHHHHHTHHHHHHTTC
T ss_pred CceeEEEEecCccCCccccchhhceeeccc-cccccccchhhhhHHHHHHHHHhcccccccccchhhHHHhccccCCCCe
Confidence 99988655555 3 33444322233222 23355666678899999999754321 0 1223333344456899999
Q ss_pred EeEeccCCCCCCC-CCCcceeeeecccccccccCcccccccCCChHHHHHHHHHH--HHHHHHHHHHHcCCCCCCCeEEE
Q 011357 307 MGFYYKEHEILPP-LPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEG--QFLSMRGHAERFGLPSPPRRIIA 383 (488)
Q Consensus 307 ~~lP~l~G~r~P~-~a~G~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEg--ia~~~r~~~~~l~~g~~~~~i~~ 383 (488)
+|+|||+|+|+|+ ++||.| +|++ . +|++||++|| |||++|++++.|++ .++|++
T Consensus 337 ~flP~l~Ger~P~~d~rG~~------------~Gl~-------~-~~l~RA~lE~~Gia~~~r~~l~~~~~---~~~i~~ 393 (482)
T 3h6e_A 337 MILPTLMRGFGPYPHGRFAW------------INRP-------E-DWFERRAAACLYAALVADTALDLIGS---TGRILV 393 (482)
T ss_dssp EEESCSSTTCSSCTTCCCEE------------ESCC-------S-SHHHHHHHHHHHHHHHHHHHHHHTTC---CSEEEE
T ss_pred EEecCCCCCCCCCCCCceEE------------eCCC-------H-HHHHHHHHHHHhHHHHHHHHHHHhcC---CCeEEE
Confidence 9999999999997 556655 4554 2 7999999995 99999999999974 378999
Q ss_pred ecCCcCCHHHHHHHHhH-hCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchh
Q 011357 384 TGGASANQTILSCLASI-YGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQ 462 (488)
Q Consensus 384 ~GGga~s~~~~Qi~Adv-lg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~ 462 (488)
+||++||++||||+||| +|+||+++...|++++|||++|+++. .+ .....+.|.... +
T Consensus 394 ~GG~a~s~~w~Qi~ADv~~g~pV~~~~~~e~~alGAA~lA~~a~----~~--------------~~~~~~~~~~~~---~ 452 (482)
T 3h6e_A 394 EGRFAEADVFVRALASLRPDCAVYTANAHNDVSFGALRLIDPGL----RP--------------QGELVRIEPLDT---G 452 (482)
T ss_dssp ESGGGGCHHHHHHHHHHSTTSEEEEESSCCCTTGGGHHHHCTTC----CC--------------SSCEEECCCCCC----
T ss_pred eCCcccCHHHHHHHhhhcCCCeEEEcCCCchHHHHHHHHhCccc----cc--------------ccccCccccccc---c
Confidence 99999999999999999 99999999999999999999999882 11 112334554431 1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011357 463 LVSKYAVMMKKRLEIENR 480 (488)
Q Consensus 463 ~~~~Y~~~y~~y~~~~~~ 480 (488)
-+..+++++++|++..+.
T Consensus 453 ~~~~~~~~~~~w~~~~~~ 470 (482)
T 3h6e_A 453 SWADLDTYRNRWQAEVEA 470 (482)
T ss_dssp ---CHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhhc
Confidence 135677777888877644
No 19
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=100.00 E-value=2.8e-71 Score=588.84 Aligned_cols=412 Identities=12% Similarity=0.059 Sum_probs=337.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCeeEEEEcccccceeeecCCCccccccCCCCCcccccccccCCCCCCccccCCCcHHHHHH
Q 011357 2 WIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCRE 81 (488)
Q Consensus 2 ww~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~G~p~~~~~d~~~pl~~~~~~~~~~~~~i~W~D~Ra~~~~~~ 81 (488)
||++++++++++.. ...+|++||||+|+|++++||++|+| | +|+|+|+|.|+.+++++
T Consensus 56 ~~~~i~~~~~~~~~--~~~~i~~Igis~q~~~~v~~D~~G~~----------l----------~~~i~w~D~R~~~~~~~ 113 (489)
T 2uyt_A 56 LESAIRLGLNKVCA--AGIAIDSIGIDTWGVDFVLLDQQGQR----------V----------GLPVAYRDSRTNGLMAQ 113 (489)
T ss_dssp HHHHHHHHHHHHHH--TTCCCCEEEEEECSSCEEEECTTSCE----------E----------SCCBCTTCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCceEEEEecCcccEEEECCCCCC----------c----------cCCccccCCccHHHHHH
Confidence 89999999988754 34689999999999999999999996 7 78999999999999999
Q ss_pred HHHHhCCHHHHHHHhCCCCCCCChHHHHHHHhhhCCchhhhccccccchhhHHHHHhCCccccccchhccccccccCCCC
Q 011357 82 IEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRV 161 (488)
Q Consensus 82 ~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~ 161 (488)
+.+..+ .++++++||+++++.++++||+|+++|+||+|++++++++++|||.|+|||+.+ +|+|+||+|+|||+++++
T Consensus 114 l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~ 191 (489)
T 2uyt_A 114 AQQQLG-KRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMN-WEYTNATTTQLVNINSDD 191 (489)
T ss_dssp HHHHHC-HHHHHHHHCCCCCTTSHHHHHHHHHHHCGGGGGGCCEEEEHHHHHHHHHHSCCC-CBHHHHGGGTCEETTTTE
T ss_pred HHHhcC-HHHHHHHhCCCCCCccHHHHHHHHHhcCchHHHHhhhccCcHHHHHHHHhCCcc-ceehhhhhhcccccCcCc
Confidence 998775 578999999999999999999999999999999999999999999999999988 999999999999999999
Q ss_pred ccHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEe-ccChhHHhhhccCCCCCCcEEEEecccccc
Q 011357 162 WSKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAGLTLSTSGDLAISLGTSDTV 239 (488)
Q Consensus 162 W~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~-g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~ 239 (488)
||+++|+.+| + .++||+|+++++++|+++.+ .| +||||++ |+||++|+++|+|+.++|++++++|||+++
T Consensus 192 W~~~ll~~~gi~--~~~lP~i~~~~~~~G~~~~~----~~--~g~pV~~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~ 263 (489)
T 2uyt_A 192 WDESLLAWSGAN--KAWFGRPTHPGNVIGHWICP----QG--NEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLM 263 (489)
T ss_dssp ECHHHHHHHTCC--GGGSCCCBCTTCEEEEEECT----TC--CEEEEECCCCBHHHHHHHHSCCCSTTEEEEEESSSEEE
T ss_pred cCHHHHHHcCCC--HHHCCCccCCCcceeeeecc----cC--CCCcEEEECchHHHHHHhcCCCCCCCcEEEEEchHhhc
Confidence 9999999999 7 79999999999999998642 23 6899997 889999999999999999999999999999
Q ss_pred ccccCCCCCCCccc---cccCccCCCcEEEeeeeechhhHHHHHHHHhc----CccHHHHHHHHhcCCCCCCCeEeEecc
Q 011357 240 FGITDDPEPRLEGH---VFPNPVDTKGYMIMLVYKNASLTREDVRNRCA----EKSWDVFNKYLQQTPPLNGGKMGFYYK 312 (488)
Q Consensus 240 ~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~g~~~~w~~~~~~----~~~~~~l~~~a~~~~~g~~gl~~lP~l 312 (488)
...+++|..++... .+++...+|.|..++.+++ .|+++.+. .+.|+++.+.+ +.+|++++ +|+|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~W~~~~~~~~~~~~~~~~l~~~a-~~~~~~~~-l~~p-- 334 (489)
T 2uyt_A 264 GFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMG-----LWLLQRVLQERQINDLPALIAAT-QALPACRF-IINP-- 334 (489)
T ss_dssp EEEESSCCCSHHHHHHTCEEECCGGGCEEEEEEECT-----THHHHHHHHHTTCCCHHHHHHHH-TTSCSSSS-CCCT--
T ss_pred ccccCCCccCHHHHhhcceeecCCCCeEEEehhHhH-----HHHHHHhhcccchhhHHHHHHHh-ccCCCcCe-eECC--
Confidence 88888876554211 1222234789999887653 48777652 24677777665 56778764 4788
Q ss_pred CCCCCCC-C-----CCcce-eeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEE
Q 011357 313 EHEILPP-L-----PVGFH-RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIA 383 (488)
Q Consensus 313 ~G~r~P~-~-----a~G~~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~ 383 (488)
.+++.+. . .+|.+ |+... ..|+++||+||++|||||.+|++++.|++ |.++++|++
T Consensus 335 ~~~~~~~p~~~~~~~~g~~~g~~~~---------------~~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~ 399 (489)
T 2uyt_A 335 NDDRFINPDEMCSEIQAACREMAQP---------------IPESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHI 399 (489)
T ss_dssp TSGGGSSCSCHHHHHHHHHHHTTCC---------------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred CCCccCChhhhHHHHHHHHHhcCCC---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2333321 1 34544 43211 24699999999999999999999999975 678899999
Q ss_pred ecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhccccccCCCCCCHHHHHHhhcccCCceeeccccCCchhh
Q 011357 384 TGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQL 463 (488)
Q Consensus 384 ~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~ 463 (488)
+||+|||++||||+||++|+||.+.. .|++++|||++|+.+... .|.++++.++.++ +.+ .++|+|++++
T Consensus 400 ~GGgaks~~~~Qi~ADvlg~pV~~~~-~e~~alGaa~~A~~a~~~--~~~~~~~~~~~~~-~~~-~~~~~P~~~~----- 469 (489)
T 2uyt_A 400 VGGGCQNTLLNQLCADACGIRVIAGP-VEASTLGNIGIQLMTLDE--LNNVDDFRQVVST-TAN-LTTFTPNPDS----- 469 (489)
T ss_dssp ESGGGGCHHHHHHHHHHHTSEEEECC-TTHHHHHHHHHHHHHTTS--CCCHHHHHHHHHH-HSC-CEEECCCTTS-----
T ss_pred eCChhhhHHHHHHHHHHHCCeeecCC-ccHhHHHHHHHHHHHcCc--cccHHHHHHHHHh-hCC-CeEECCCcch-----
Confidence 99999999999999999999999866 799999998888777100 3344455555543 333 5789999999
Q ss_pred H-HHHHHHHHHHHHHHH
Q 011357 464 V-SKYAVMMKKRLEIEN 479 (488)
Q Consensus 464 ~-~~Y~~~y~~y~~~~~ 479 (488)
+ +.|+++|++|+++.+
T Consensus 470 ~~~~Y~~~~~~y~~~~~ 486 (489)
T 2uyt_A 470 EIAHYVALIHSTRQTKE 486 (489)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHHHHHHhhchhh
Confidence 9 999999999998764
No 20
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=99.38 E-value=3.5e-13 Score=131.37 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=98.8
Q ss_pred eechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCcce-eeeecccccccccCcccccccCC
Q 011357 270 YKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFH-RYILENFEGETLDGVNEVEVKEF 348 (488)
Q Consensus 270 ~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~P~~a~G~~-~l~~~~~~~~~~~g~~~~~~~~~ 348 (488)
...+|..++|+.+.++. +++++++++.+.+ .||..++|++.-+++.+ ++.. ..|
T Consensus 128 a~GtG~~le~~a~~lg~-~~~el~~la~~~~--------~p~~~~~~c~vfa~s~v~~l~~----------------~g~ 182 (270)
T 1hux_A 128 AAGTGRFLDVMANILEV-KVSDLAELGAKST--------KRVAISSTCTVFAESEVISQLS----------------KGT 182 (270)
T ss_dssp CTTSHHHHHHHHHHHTC-CTTTHHHHHTTCC--------SCCCCCCCSHHHHHHHHHHHHH----------------TTC
T ss_pred chhhHHHHHHHHHHhCC-CHHHHHHHHhhCC--------CCCCcccccchhHhHHHHHHhh----------------CCC
Confidence 33457789999998854 6888998886643 46667777764233322 3211 235
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCC-hhHHHHHHHHHhc
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRAAHG 425 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e-~~alGaA~~A~~~ 425 (488)
+++|++|+++|+|++.+...++.+ +. .++|+++||+++|+.|+|+++|++|+||.+++..+ .+|+|||++|+..
T Consensus 183 ~~~di~~av~e~Va~~i~~~~~~~--~~-~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 183 DKIDIIAGIHRSVASRVIGLANRV--GI-VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTT--CC-CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC--CC-CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 899999999999999986665543 22 47899999999999999999999999999988777 6999999999876
No 21
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.76 E-value=7.2e-05 Score=72.31 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeec-CCChhHHHHHHHHHhc
Q 011357 348 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAHG 425 (488)
Q Consensus 348 ~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~~A~~~ 425 (488)
..++++.+++.+.++-.+........ ..++|+++||.++|+.+++.+++.+|+++.++. ..+.+|+|||+.|..-
T Consensus 180 ~~~~di~a~~~~~v~~~l~~~~~~~~---~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~ 255 (276)
T 4ehu_A 180 AKIEDIVAGIHTSVAKRVSSLVKRIG---VQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDE 255 (276)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHC---CCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcc---cCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHH
Confidence 47899999999999887766555443 467899999999999999999999999999877 4678899999998754
No 22
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=97.64 E-value=0.00026 Score=68.71 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=88.3
Q ss_pred eeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCC---CCCCCC-CCcceeeeecccccccccCcccc
Q 011357 268 LVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEH---EILPPL-PVGFHRYILENFEGETLDGVNEV 343 (488)
Q Consensus 268 ~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G---~r~P~~-a~G~~~l~~~~~~~~~~~g~~~~ 343 (488)
++.-.+|..++-.+..+...++++|.+++.+-..-.-.+. +-.+.| ...|.+ ....|+-... =++
T Consensus 136 g~aaGgGtFl~l~a~ll~~~~~~el~~lA~~g~~~~vDl~-v~DIy~~~~~~l~~~s~as~Fgk~~~--------l~~-- 204 (287)
T 2ews_A 136 GIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLK-VRHIYKDTEPPIPGDLTAANFGHVLH--------HLD-- 204 (287)
T ss_dssp EESCSHHHHHHHHHHHHCCCCHHHHHHHHTTCCCTTTCEE-TTTC-------CCTTSEEETTTTGGG--------CTT--
T ss_pred ccccchhhHHHHHHHHhCCCCHHHHHHHHHcCCccccccc-hhhhcCCCCCCcCcchhhHHHHHHHH--------HHh--
Confidence 4555667777777766654689999999864321111111 111111 122222 1223431000 001
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecC-CcCCHHHHHHHHhH---hCCceEeecCCC-hhHHHH
Q 011357 344 EVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGG-ASANQTILSCLASI---YGCDIYTVQRPD-SASLGA 418 (488)
Q Consensus 344 ~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GG-ga~s~~~~Qi~Adv---lg~pV~~~~~~e-~~alGa 418 (488)
...+++|++++++.+|+..+........+..++++|+++|| .++|+.+++.+.+. .+.++..++.++ .+|+||
T Consensus 205 --~g~~~eDIaasl~~sV~~~I~~la~~~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGA 282 (287)
T 2ews_A 205 --ADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGA 282 (287)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHH
Confidence 23589999999999998887665543211234568999999 89999999999998 588898877554 689999
Q ss_pred HHHH
Q 011357 419 ALRA 422 (488)
Q Consensus 419 A~~A 422 (488)
|+.|
T Consensus 283 aL~~ 286 (287)
T 2ews_A 283 LYLE 286 (287)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 9863
No 23
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=97.57 E-value=0.00028 Score=67.81 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeec-CCChhHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRA 422 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~~A 422 (488)
...++++.+++.+...++..++... .++.|+++||+++++.+.+++.+.++.||.++. ..+++|+|||+.|
T Consensus 201 ~~~~~~~~~~~~i~~~i~~~l~~~~---~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 201 EIMRVVRPVIEKMALIVKEVIKNYD---QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSC---SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEECCccchhhHHHHHHHHhCCCccccCChHHHHHHHHHhcC
Confidence 5667888999988877777665442 367999999999999999999999999998755 5578999999753
No 24
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=97.09 E-value=0.00065 Score=73.18 Aligned_cols=201 Identities=12% Similarity=0.061 Sum_probs=120.1
Q ss_pred cccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCC----CCcEEEEeccccccccccCCCCCCCccccccCccCCCcEE
Q 011357 190 CIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLST----SGDLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYM 265 (488)
Q Consensus 190 ~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~----~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 265 (488)
..+.++++..|| .|+.-..+-.||+++.|... .+.+++-+|-+++-..+..-...++ .+.+-
T Consensus 152 ~a~~~Aa~~AGl----~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~----------~~~~e 217 (605)
T 4b9q_A 152 QATKDAGRIAGL----EVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDG----------EKTFE 217 (605)
T ss_dssp HHHHHHHHHTTC----EEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSS----------CEEEE
T ss_pred HHHHHHHHHcCC----ceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCC----------CceEE
Confidence 445667777665 57777788889999887643 1234555665554333332100000 01111
Q ss_pred E---eeeeechhh-----HHHHHHHHhcC----------ccHHHHHHHHhcC----CCCCCCeEeEeccCCCCCCCCCCc
Q 011357 266 I---MLVYKNASL-----TREDVRNRCAE----------KSWDVFNKYLQQT----PPLNGGKMGFYYKEHEILPPLPVG 323 (488)
Q Consensus 266 ~---~~~~~~~g~-----~~~w~~~~~~~----------~~~~~l~~~a~~~----~~g~~gl~~lP~l~G~r~P~~a~G 323 (488)
. .+...-||. ..+|+.+.|.. ..+..|.+.++++ .......+.+|++... ..|
T Consensus 218 vla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~-----~~g 292 (605)
T 4b9q_A 218 VLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITAD-----ATG 292 (605)
T ss_dssp EEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEC-----SSS
T ss_pred EEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccC-----CCC
Confidence 1 111223444 45677765531 1133344443322 2222334556665321 111
Q ss_pred -c-eeeeecccccccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhH
Q 011357 324 -F-HRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASI 400 (488)
Q Consensus 324 -~-~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Adv 400 (488)
. +.+.++ .....++.+.+++.+.-.++..++.... ...++.|+++||++++|.+.+++.+.
T Consensus 293 ~~~~~~~it----------------r~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~ 356 (605)
T 4b9q_A 293 PKHMNIKVT----------------RAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356 (605)
T ss_dssp EEEEEEEEE----------------HHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHH
T ss_pred CeeEEEEEe----------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHH
Confidence 1 122221 1145677888899888888888887643 34688999999999999999999999
Q ss_pred hCCceEee-cCCChhHHHHHHHHHhc
Q 011357 401 YGCDIYTV-QRPDSASLGAALRAAHG 425 (488)
Q Consensus 401 lg~pV~~~-~~~e~~alGaA~~A~~~ 425 (488)
||+++... +..++.|+|||+.|+.-
T Consensus 357 fg~~~~~~~nPdeaVA~GAai~a~~l 382 (605)
T 4b9q_A 357 FGKEPRKDVNPDEAVAIGAAVQGGVL 382 (605)
T ss_dssp HTSCCCSSSCTTTHHHHHHHHHHHHH
T ss_pred hccCcCCCcChhHHHHHhHHHHHHHh
Confidence 99988764 46789999999999865
No 25
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=97.07 E-value=0.0012 Score=67.27 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe---------ecCCChhHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT---------VQRPDSASLGA 418 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~---------~~~~e~~alGa 418 (488)
.-+++++.+++.+.-.++..++.... ...++.|+++||++++|.+.+++.+.|+.++.+ .+..++.|+||
T Consensus 315 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GA 394 (409)
T 4gni_A 315 RYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGA 394 (409)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHH
Confidence 34566777888888778887776643 346799999999999999999999999988533 46778999999
Q ss_pred HHHHHhc
Q 011357 419 ALRAAHG 425 (488)
Q Consensus 419 A~~A~~~ 425 (488)
|+.|+.-
T Consensus 395 a~~~~~~ 401 (409)
T 4gni_A 395 ALQASLI 401 (409)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 9999864
No 26
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=97.07 E-value=0.0011 Score=67.10 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHh-CCceEee-cCCChhHHHHHHHHHh
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIY-GCDIYTV-QRPDSASLGAALRAAH 424 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advl-g~pV~~~-~~~e~~alGaA~~A~~ 424 (488)
...++++.+++.+.-.++..++.... ...++.|+++||++++|.+.+.+.+.| +++|... +..++.|+|||+.|+.
T Consensus 314 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 392 (394)
T 3qfu_A 314 KFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGV 392 (394)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 44567777888888888888876643 346789999999999999999999999 8888765 5678999999999874
No 27
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=97.05 E-value=0.0017 Score=64.72 Aligned_cols=150 Identities=10% Similarity=-0.041 Sum_probs=90.4
Q ss_pred CcEEEe-eeeechhhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEeEeccCCCCC-----CCCC-Ccceeeeeccccc
Q 011357 262 KGYMIM-LVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEIL-----PPLP-VGFHRYILENFEG 334 (488)
Q Consensus 262 g~~~~~-~~~~~~g~~~~w~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~G~r~-----P~~a-~G~~~l~~~~~~~ 334 (488)
|.|... ++...||..+.-.+-.....+|++|.+++.+-..-.-.+ .+=.+.|... |.+. ...||-....
T Consensus 195 ~~f~rvgG~siGGGTflGL~~lLtg~~~~dEl~~lA~~Gd~~~vDl-lV~DIYg~~y~~~gL~~~~~ASsFGk~~~~--- 270 (360)
T 2i7n_A 195 DNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDK-LVKDIYGGDYERFGLQGSAVASSFGNMMSK--- 270 (360)
T ss_dssp TEEEEEEEESCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSE-EHHHHHSSCBGGGTBCTTSEEETTTTTTSH---
T ss_pred CCEEEeccccCccHhHHHHHHHHhCCCCHHHHHHHHHcCCCCcccc-eeeecccCcccccCCCccceeehhhhHhhH---
Confidence 344444 444556665555552234479999999997633211111 1222333221 2221 1133210000
Q ss_pred ccccCcccccccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecC-CcCCHHHHHHHHhHhC------CceEe
Q 011357 335 ETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGG-ASANQTILSCLASIYG------CDIYT 407 (488)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GG-ga~s~~~~Qi~Advlg------~pV~~ 407 (488)
.+....+++|++++++..|+..+....-.......+++|+++|| .++|+..+++++..++ +++..
T Consensus 271 --------~~~~~~~~eDIa~gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~ 342 (360)
T 2i7n_A 271 --------EKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALF 342 (360)
T ss_dssp --------HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEE
T ss_pred --------hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEE
Confidence 00023589999999999999998776532111112457999999 8999999999999985 78887
Q ss_pred ecCC-ChhHHHHHHHHH
Q 011357 408 VQRP-DSASLGAALRAA 423 (488)
Q Consensus 408 ~~~~-e~~alGaA~~A~ 423 (488)
++.. -.+|+|||+.+.
T Consensus 343 ~~~~~y~GAlGAaL~~~ 359 (360)
T 2i7n_A 343 LEHEGYFGAVGALLELF 359 (360)
T ss_dssp ETTTTCHHHHHHHHHHT
T ss_pred cCCccHHHHHHHHHHhc
Confidence 7644 488999999763
No 28
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=96.96 E-value=0.0013 Score=66.96 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHh-CCceEee-cCCChhHHHHHHHHHhc
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIY-GCDIYTV-QRPDSASLGAALRAAHG 425 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advl-g~pV~~~-~~~e~~alGaA~~A~~~ 425 (488)
.-.++++.+++.+.-.++..++.... ...++.|+++||++++|.+.+++.+.| +.+|... +..++.|+|||+.|+.-
T Consensus 322 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l 401 (404)
T 3i33_A 322 RFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 401 (404)
T ss_dssp HHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 34566677777777777777776543 346789999999999999999999999 8888765 56789999999999864
No 29
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=96.74 E-value=0.0026 Score=64.10 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeec-CCChhHHHHHHHHHh
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 424 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~~A~~ 424 (488)
-.++++..++.+.-.++..++.... ...++.|+++||+++.|.+.+.+.+.|+.+|.... ..++.|+|||+.|+.
T Consensus 305 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 305 LESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHh
Confidence 3455666777776666666665432 24678999999999999999999999999887644 677899999998763
No 30
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=96.18 E-value=0.03 Score=55.80 Aligned_cols=104 Identities=12% Similarity=-0.016 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhC-CceEeecC-----CChhHHHHHHH
Q 011357 348 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG-CDIYTVQR-----PDSASLGAALR 421 (488)
Q Consensus 348 ~~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg-~pV~~~~~-----~e~~alGaA~~ 421 (488)
.+++|+.+-+.|-.|.++.+.++.+.. .+++|+++|||++|+.+|+.++..+. .+|...+. .---|+.-|++
T Consensus 256 ls~~Dv~ATLt~~TA~sIa~~~~~~~~--~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aFA~L 333 (371)
T 3qbx_A 256 LPAADIQATLLELSARSISESLLDAQP--DCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWL 333 (371)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCT--TCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccC--CCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHHHHH
Confidence 378999999999999999998887752 46899999999999999999999985 77776542 12336667777
Q ss_pred HHhccccccCCCCCCHHHHHHhhcccCCceeecccc
Q 011357 422 AAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVT 457 (488)
Q Consensus 422 A~~~~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~ 457 (488)
|...+ .|.-.++.......-..+.-.+.|.-.
T Consensus 334 A~~~l----~g~p~~lp~vTGA~~~~~lG~i~p~~~ 365 (371)
T 3qbx_A 334 AHRFL----ERLPGNCPDVTGALGPRTLGALYPAGS 365 (371)
T ss_dssp HHHHH----TTCCCSCHHHHCCSSCCCCCEEECC--
T ss_pred HHHHH----cCCCCCCCcccCCCCCccCceeccCCC
Confidence 77664 454445554432111123334567643
No 31
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.0072 Score=63.57 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEee-cCCChhHHHHHHHHHh
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTV-QRPDSASLGAALRAAH 424 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~-~~~e~~alGaA~~A~~ 424 (488)
-.++.+.+++.+.-.++..++.... ...++.|+++||+++.|.+.+.+.+.||.++... +..++.|+|||+.|+.
T Consensus 274 fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~ 350 (509)
T 2v7y_A 274 FEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGV 350 (509)
T ss_dssp HHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHH
Confidence 3455666677776666776766542 2457899999999999999999999999887544 4678899999999975
No 32
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=96.02 E-value=0.0066 Score=66.09 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
-.++++.+++.+.-.++..++.... ...++.|+++||+++.|.+.+++.+.||+++.. .+..++.|+|||+.|+.-
T Consensus 306 fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~l 383 (675)
T 3d2f_A 306 LEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIH 383 (675)
T ss_dssp HHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHh
Confidence 3455666667666666777766542 235789999999999999999999999998865 457789999999999864
No 33
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=95.83 E-value=0.013 Score=62.27 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhC-CceEee-cCCChhHHHHHHHHHhc
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYG-CDIYTV-QRPDSASLGAALRAAHG 425 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg-~pV~~~-~~~e~~alGaA~~A~~~ 425 (488)
+++...+++.+.-.++..++.... ...++.|+++||+++.|.+.+.+.+.|+ +++... +..++.|+|||+.|+.-
T Consensus 303 e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l 380 (554)
T 1yuw_A 303 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 380 (554)
T ss_dssp HHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHh
Confidence 345666666666666777765432 2467899999999999999999999996 776554 57789999999999864
No 34
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=95.25 E-value=0.097 Score=52.17 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh-CCceEeecC-----CChhHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY-GCDIYTVQR-----PDSASLGAALRA 422 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl-g~pV~~~~~-----~e~~alGaA~~A 422 (488)
+++|+.+-+.|=.|.++.+.++.+. ..++|+++|||++|+.+|+.++..+ +.+|...+. .---|+.-|++|
T Consensus 264 ~~~Dv~ATLt~~TA~sIa~~~~~~~---~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t~~~Gi~~d~~EA~aFA~LA 340 (370)
T 3cqy_A 264 NEEDIQSTLLDLTCHSIAQDILKLA---QEGELFVCGGGAFNAELMQRLAALLPGYRIDTTSALGVDPKWAEGIAFAWLA 340 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC---SSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEGGGGTCCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEECCCcCCHHHHHHHHHhCCCCeeeeHHHhCCChhHHHHHHHHHHH
Confidence 6899999999999999999998773 3568999999999999999999999 456655431 223455667777
Q ss_pred HhccccccCCCCCCHHHH
Q 011357 423 AHGYLCSKKGSFVPISNM 440 (488)
Q Consensus 423 ~~~~~~~~~G~~~~~~~a 440 (488)
...+ .|.-.++...
T Consensus 341 ~~~l----~g~p~nlp~v 354 (370)
T 3cqy_A 341 MRYQ----LGLPANLPAV 354 (370)
T ss_dssp HHHH----TTCCCCCHHH
T ss_pred HHHH----cCCCCCCCcc
Confidence 7664 4444455544
No 35
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=95.08 E-value=0.012 Score=58.30 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--CC-C-CeEEEecCCcCCHHHHHHHHhHhCCceEee-cCCChhHHHHHHHHH
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGLP--SP-P-RRIIATGGASANQTILSCLASIYGCDIYTV-QRPDSASLGAALRAA 423 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~g--~~-~-~~i~~~GGga~s~~~~Qi~Advlg~pV~~~-~~~e~~alGaA~~A~ 423 (488)
..+++..++.+.-.++..++..... .. + +.|+++||+|+.+.+.+.+.+.|+.||.+. +..++.++|+|+.|.
T Consensus 247 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~ 324 (344)
T 1jce_A 247 REALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLD 324 (344)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHh
Confidence 3455566666666666666543210 11 2 579999999999999999999999999876 467789999998876
No 36
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=95.00 E-value=0.03 Score=60.13 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHcCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEe-ecCCChhHHHHHHHHHhc
Q 011357 357 LVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 425 (488)
Q Consensus 357 vlEgia~~~r~~~~~l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~-~~~~e~~alGaA~~A~~~ 425 (488)
+++.+.-.++..++.... ...++.|+++||+++.|.+.+++.+.||+++.. .+..++.|+|||+.|+.-
T Consensus 312 ~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l 382 (605)
T 2kho_A 312 LVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL 382 (605)
T ss_dssp TTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHh
Confidence 444444445555554432 246899999999999999999999999987754 456789999999999763
No 37
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=94.85 E-value=0.066 Score=53.02 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeec----CCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ----RPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~----~~e~~alGaA~~ 421 (488)
.++++.+++.+.++-.+...++...+...+++|.++||.+.|..+++.+.+.+ |.+|.+++ .+.+.++|.|..
T Consensus 221 ~~~diAasfq~~l~~~l~~~~~~a~~~~g~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~ 300 (334)
T 3eno_A 221 AIEDISYSIQETAFAMLVEVLERALYVSGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAAL 300 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHH
Confidence 67899999888888888777765432123589999999999999999999988 78888764 346778898877
Q ss_pred HHhccccccCCCCCCH
Q 011357 422 AAHGYLCSKKGSFVPI 437 (488)
Q Consensus 422 A~~~~~~~~~G~~~~~ 437 (488)
..+- .|...++
T Consensus 301 ~~~~-----~g~~~~~ 311 (334)
T 3eno_A 301 LMYK-----SGVRMSV 311 (334)
T ss_dssp HHHH-----TTCCCCG
T ss_pred HHHH-----cCCCCCc
Confidence 6665 5655543
No 38
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=94.69 E-value=0.054 Score=54.21 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcC--C-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeec
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFG--L-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQ 409 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~--~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~ 409 (488)
.-.++++..++.+.-.++..++.+. . ...++.|+++||+++.+.+.+++++.||.||.+.+
T Consensus 275 ~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~ 338 (377)
T 2ych_A 275 RIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVN 338 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecC
Confidence 5567888999999999999888652 1 34689999999999999999999999999999864
No 39
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=94.41 E-value=0.092 Score=51.82 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeec----CCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ----RPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~----~~e~~alGaA~~ 421 (488)
.++++.+++.+.++-.+...++.+.+....++|.++||.+.|..+++.+.+.+ |.+|.+++ ...+.++|+|..
T Consensus 216 ~~~diAa~fq~~l~~~l~~~~~~~~~~~~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~ 295 (330)
T 2ivn_A 216 RVEDLAYSFQETAFAALVEVTERAVAHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGL 295 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHH
Confidence 68899999999998888887776543123579999999999999999999887 77777654 345678898876
Q ss_pred HHhc
Q 011357 422 AAHG 425 (488)
Q Consensus 422 A~~~ 425 (488)
..+.
T Consensus 296 ~~~~ 299 (330)
T 2ivn_A 296 RMYK 299 (330)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6655
No 40
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=94.14 E-value=0.11 Score=55.91 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh-CCceEeec----CCChhHHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY-GCDIYTVQ----RPDSASLGAALRAA 423 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl-g~pV~~~~----~~e~~alGaA~~A~ 423 (488)
+++++.+++.++++-.+...++.+.+...+++|.++||.++|..+++.+.+.+ |.+|..+. ...+.++|-|++|+
T Consensus 571 ~~~dIAasFh~ala~~L~~~~~ra~~~~g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~DnGiaLGQA~~a~ 650 (657)
T 3ttc_A 571 PVNQRAWAFHDALAQGFAALMREQATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAA 650 (657)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCcHHHHHHHHHHHH
Confidence 78999999999999998888776543235689999999999999999999998 88887642 34577899999886
Q ss_pred h
Q 011357 424 H 424 (488)
Q Consensus 424 ~ 424 (488)
.
T Consensus 651 ~ 651 (657)
T 3ttc_A 651 A 651 (657)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=94.08 E-value=0.081 Score=57.97 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeec----CCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ----RPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~----~~e~~alGaA~~ 421 (488)
+++++.+++.++++-.+....+.+.+...+++|.++||.+.|..+++.+.+.+ |.+|..+. ...+.|+|.|++
T Consensus 665 ~~~dIAasFq~ala~~L~~~~~~a~~~~g~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~DgGialGQA~~ 744 (761)
T 3vth_A 665 EKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVI 744 (761)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSSGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCchHHHHHHHHH
Confidence 67888888888888888877766543124579999999999999999998887 78887754 345678999999
Q ss_pred HHhc
Q 011357 422 AAHG 425 (488)
Q Consensus 422 A~~~ 425 (488)
|+..
T Consensus 745 a~~~ 748 (761)
T 3vth_A 745 ANKI 748 (761)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 42
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=93.75 E-value=0.058 Score=55.14 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC-------CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeec
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL-------PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQ 409 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~-------g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~ 409 (488)
.-.++++..+|-+.-.++..++.... ...++.|+++||+|+-+.+.+++++.||+||++..
T Consensus 293 ~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~ 360 (419)
T 4a2a_A 293 KLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC 360 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEe
Confidence 45678899999999999999987642 23567899999999999999999999999998755
No 43
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=92.83 E-value=0.17 Score=55.65 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeec----CCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ----RPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~----~~e~~alGaA~~ 421 (488)
+++++.+++.+.++-.+...+..+.+...+++|.++||.+.|.++++.+.+.+ |..|.++. ...+.|+|.|++
T Consensus 677 ~~~dIAasfQ~al~~~L~~~~~~a~~~tg~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALGQA~i 756 (772)
T 4g9i_A 677 SPADIAYSAHLALARAFAHTAVERAREFGVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVGQAFL 756 (772)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHHHHHH
Confidence 67888888888887777776665543235689999999999999999998876 56776642 455679999999
Q ss_pred HHhc
Q 011357 422 AAHG 425 (488)
Q Consensus 422 A~~~ 425 (488)
|+..
T Consensus 757 A~~~ 760 (772)
T 4g9i_A 757 GGLY 760 (772)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 44
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=91.95 E-value=0.22 Score=48.61 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCC---ceEeec-CCChhHHHHHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC---DIYTVQ-RPDSASLGAALRA 422 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~---pV~~~~-~~e~~alGaA~~A 422 (488)
++++..++.++-.+...++.+ ..++.|+++||+|+ ++.+.+.+.++. ++.++. +.++.|+|+++.+
T Consensus 250 ~~i~~~~~~~~~~i~~~i~~~---~~~~~vvl~GGga~--ll~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 250 EAMNEALRKLEQRVLNTLNEF---SGYTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---CCCCEEEEESTTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh---cCCCeEEEECChHH--HHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 355566666655555544443 24689999999997 488999999998 566554 5678899999865
No 45
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=90.33 E-value=0.37 Score=50.96 Aligned_cols=76 Identities=18% Similarity=0.121 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCC-ceEeec--CCChhHHHHHHHHHhc
Q 011357 350 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC-DIYTVQ--RPDSASLGAALRAAHG 425 (488)
Q Consensus 350 ~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~-pV~~~~--~~e~~alGaA~~A~~~ 425 (488)
..++.+++-+.++-.+...+..+.+...+++|.++||.+.|..+++.+....+. .|.++. ...+.++|+|+.+..-
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~a~~~tg~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~a~~~ 358 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADSVLARTGERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAAVAVE 358 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHHHHHH
Confidence 688888888888877777766543312468999999999999999998887765 555542 4567789999998764
No 46
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=83.32 E-value=2.3 Score=44.66 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh---CCceEeec
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ 409 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl---g~pV~~~~ 409 (488)
+++++.+++.+.++-.+....+...+....++|.++||.+.|..+++.+...+ |.+|..++
T Consensus 220 ~~~~ia~~fq~~~~~~l~~~~~~a~~~~~~~~~~~~GGVa~N~~l~~~l~~~~~~~~~~~~~p~ 283 (540)
T 3en9_A 220 RLEDICYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPP 283 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGCHHHHHHHHHHHHHTTCEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCcHHhHHHHHHHHHHHHHhcCCEEEeCC
Confidence 57889888888888777766655432123579999999999999999999876 66777754
No 47
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=81.40 E-value=4.1 Score=38.82 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhC-CceEeecCCChhHHHHHHHHHhc
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG-CDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg-~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
++++-..+.++..+...+..+ .++.|++.||.++++.+.+.+...+. .+|......+++++|||.++...
T Consensus 218 ~il~~~~~~La~~i~~l~~~l----~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~GAa~la~~~ 288 (299)
T 2e2o_A 218 DILKQGAELLASQAVYLARKI----GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDLGKRSPEIGAVILAYKE 288 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEECCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccCCCCChHHHHHHHHHHh
Confidence 344444445555555555555 35789999998877766665555443 47777664467889999998765
No 48
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=77.12 E-value=5.1 Score=39.05 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecC-CChhHHHHHHHHHh
Q 011357 351 PSEVRALVEGQFLSMRGHAERFGLP-SPPRRIIATGGASANQTILSCLASIYGCDIYTVQR-PDSASLGAALRAAH 424 (488)
Q Consensus 351 ~~~~rAvlEgia~~~r~~~~~l~~g-~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~-~e~~alGaA~~A~~ 424 (488)
.+.++..++-++-.+...++..+.. ..++.|+++||||. ++.+.+.+.++.++.+++. ..+.|+|+..++-.
T Consensus 251 ~~~i~~~~~e~~~~I~~~i~~~~~~~~~~~~IvltGGGA~--l~~~~l~~~~~~~v~v~~~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 251 STVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQ--KLKEQISKTYPNNSIITNNSQWTTCEGLYKVAVA 324 (329)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCCTTSCSEEEEESTTHH--HHHHHHHHHSTTCEECCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHccEEEEECChHH--HHHHHHHHHcCCCCEecCCChhhHHHHHHHHHhh
Confidence 4556666666665555555544322 22579999999996 4669999999988888764 44778888877653
No 49
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=74.00 E-value=12 Score=35.72 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhC------CceEeec-CCChhHHHHHHHHHh
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG------CDIYTVQ-RPDSASLGAALRAAH 424 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg------~pV~~~~-~~e~~alGaA~~A~~ 424 (488)
++++-..+.++..+...+..+ .++.|++.||.++.+.+.+.+-..+. .+|+... ..+++++|||.++..
T Consensus 216 ~~~~~~~~~La~~i~~l~~~~----~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 216 RLITEFYTGICTGLYNLIYLF----DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 344445555555555555555 36789999998876656655444443 2344444 456889999998876
Q ss_pred c
Q 011357 425 G 425 (488)
Q Consensus 425 ~ 425 (488)
.
T Consensus 292 ~ 292 (297)
T 4htl_A 292 E 292 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=72.23 E-value=14 Score=34.87 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHh------------CCceEeec-CCChhHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY------------GCDIYTVQ-RPDSASLGA 418 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advl------------g~pV~~~~-~~e~~alGa 418 (488)
++++-..+.++..+...+..+ .++.|++.||.+..+.+.+.+...+ ..+|.... ..++.++||
T Consensus 206 ~i~~~~~~~L~~~i~~l~~~l----~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GA 281 (292)
T 2gup_A 206 EAIERMNRNLAQGLLNIQYLI----DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGA 281 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHH
Confidence 445555566666666666665 3578888888877766654433322 24555544 456788999
Q ss_pred HHHHHhc
Q 011357 419 ALRAAHG 425 (488)
Q Consensus 419 A~~A~~~ 425 (488)
|.++..-
T Consensus 282 a~~~~~~ 288 (292)
T 2gup_A 282 LVNWLQE 288 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987643
No 51
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=72.09 E-value=1.8 Score=42.65 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHH-cCC-CCCCCeEEEecCCcCCHHHHHHHHhHhCCceE---eecCCChhHHHHHHHHH
Q 011357 355 RALVEGQFLSMRGHAER-FGL-PSPPRRIIATGGASANQTILSCLASIYGCDIY---TVQRPDSASLGAALRAA 423 (488)
Q Consensus 355 rAvlEgia~~~r~~~~~-l~~-g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~---~~~~~e~~alGaA~~A~ 423 (488)
+.+++-++-.+...++. +++ ...++.|+++||+|+- +.+.+.+.++.... ..++.++.|+|+..++-
T Consensus 272 ~~~i~~~~~~i~~~i~~~l~~~~~~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 272 GPILEDLANRIIENIRLNLRGEVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 44444444444444433 332 1245889999999985 77888899985433 22345788999987653
No 52
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=71.14 E-value=13 Score=35.83 Aligned_cols=68 Identities=18% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC-HHHHHHHHhHh----------CCceEeec-CCChhHHHHHH
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIY----------GCDIYTVQ-RPDSASLGAAL 420 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s-~~~~Qi~Advl----------g~pV~~~~-~~e~~alGaA~ 420 (488)
+++-..+.++..+...+..+ .++.|++.||.++. +.+.+.+-+.+ ..+|.... ..+++++|||.
T Consensus 240 ~~~~~~~~La~~i~~l~~~l----dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~ 315 (321)
T 3r8e_A 240 VWADIGTIIGESLVNIVRVM----DLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAG 315 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----CCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----CCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHH
Confidence 44444555555555555555 35889998888876 55554443322 23455444 34678899999
Q ss_pred HHHh
Q 011357 421 RAAH 424 (488)
Q Consensus 421 ~A~~ 424 (488)
++..
T Consensus 316 l~~~ 319 (321)
T 3r8e_A 316 LIME 319 (321)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8864
No 53
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=70.70 E-value=7.8 Score=37.55 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhC---------CceEeec-CCChhHHHHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG---------CDIYTVQ-RPDSASLGAALR 421 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg---------~pV~~~~-~~e~~alGaA~~ 421 (488)
++++-..+-++..+..++..+ .++.|++.||.++.+.+.+.+-+.+. .+|.... ..+++++|||.+
T Consensus 248 ~~~~~~~~~La~~i~~l~~~l----~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l 323 (327)
T 4db3_A 248 EHVERFMELLAICFGNIFTAN----DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFL 323 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHH
Confidence 445555555666666665555 35788898888877655554444332 2344433 346788999987
Q ss_pred HHh
Q 011357 422 AAH 424 (488)
Q Consensus 422 A~~ 424 (488)
+..
T Consensus 324 ~l~ 326 (327)
T 4db3_A 324 NIK 326 (327)
T ss_dssp TCC
T ss_pred Hhc
Confidence 653
No 54
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=70.28 E-value=11 Score=35.46 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhC-------CceEeec-CCChhHHHHHHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG-------CDIYTVQ-RPDSASLGAALRAA 423 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg-------~pV~~~~-~~e~~alGaA~~A~ 423 (488)
++++-..+.++..+...+..+ .++.|++.||.+.++.+.+.+...+. .+|.... ..+++++|||.++.
T Consensus 212 ~i~~~~~~~L~~~i~~l~~~l----~p~~ivlgG~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~ 287 (289)
T 2aa4_A 212 QLIHRSARTLARLIADIKATT----DCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQ 287 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCEEEEeCcccccHHHHHHHHHHHHHhcCccCCEEEECCCCCchHHHHHHHHHh
Confidence 345555555566665555555 35778888888866666655544433 2444444 35678899998864
No 55
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=66.84 E-value=4.8 Score=39.90 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCeEEEecCCcCCHHHHHHHHhHhC--------CceEee-cCCChhHHHHHHHHHhc
Q 011357 378 PRRIIATGGASANQTILSCLASIYG--------CDIYTV-QRPDSASLGAALRAAHG 425 (488)
Q Consensus 378 ~~~i~~~GGga~s~~~~Qi~Advlg--------~pV~~~-~~~e~~alGaA~~A~~~ 425 (488)
.+.|+++||+|+-+-+.+.+.+.++ .+|... +...++.+|++++|...
T Consensus 294 ~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~l~ 350 (375)
T 2fxu_A 294 YANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 350 (375)
T ss_dssp HTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCG
T ss_pred HhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhCcc
Confidence 3569999999999999999988876 333332 34568899999998754
No 56
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=65.74 E-value=15 Score=35.61 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=25.0
Q ss_pred CCeEEeccChhHHhhhccCCCCCCcEEEEeccccccc
Q 011357 204 NCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVF 240 (488)
Q Consensus 204 g~pV~~g~~D~~aa~lg~g~~~~g~~~~s~GTs~~~~ 240 (488)
+.||.. ..|..++++|. ...+-+++++||+....
T Consensus 102 ~~pv~v-~NDa~aaa~a~--~~~~~v~v~~GTGig~~ 135 (347)
T 2ch5_A 102 SESYLI-TTDAAGSIATA--TPDGGVVLISGTGSNCR 135 (347)
T ss_dssp BSCEEE-EEHHHHHHHHH--CSSCEEEEEESSSEEEE
T ss_pred CceEEE-ECcHHHHHHhh--CCCCcEEEEEcCCceeE
Confidence 367665 67999999984 34667889999986543
No 57
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=65.64 E-value=28 Score=33.31 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCH-----HHHHHHHhHhC-------CceEeec-CCChhHHHHH
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQ-----TILSCLASIYG-------CDIYTVQ-RPDSASLGAA 419 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~-----~~~Qi~Advlg-------~pV~~~~-~~e~~alGaA 419 (488)
.++.+++-++..+...+..+ .++.|++.||.++.. .+.+.+...+. .+|+... ..+++++|||
T Consensus 219 ~~~~~~~~~a~~la~l~~~~----dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa 294 (310)
T 3htv_A 219 FVQSLLENAARAIATSINLF----DPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAA 294 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----CCSEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh----CCCEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHH
Confidence 45667777777777666665 368888888888652 33333333331 2333333 4578899999
Q ss_pred HHHHhc
Q 011357 420 LRAAHG 425 (488)
Q Consensus 420 ~~A~~~ 425 (488)
.++...
T Consensus 295 ~la~~~ 300 (310)
T 3htv_A 295 ILAHQR 300 (310)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 58
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=63.61 E-value=22 Score=33.99 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcC-CHHHHHHHHhHh----------CCceEeec-CCChhHHHHHH
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASA-NQTILSCLASIY----------GCDIYTVQ-RPDSASLGAAL 420 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~-s~~~~Qi~Advl----------g~pV~~~~-~~e~~alGaA~ 420 (488)
+++-..+-++..+..++..+ .++.|++.||.++ ++.+.+.+...+ ..+|.... ..+++++|||.
T Consensus 242 i~~~~~~~L~~~i~~l~~~l----~p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~ 317 (326)
T 2qm1_A 242 VVDRVCFYLGLATGNLGNTL----NPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAAS 317 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----CCSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHH
Confidence 34444444555555555554 3578999888885 566554443322 23455543 34578899999
Q ss_pred HHHhc
Q 011357 421 RAAHG 425 (488)
Q Consensus 421 ~A~~~ 425 (488)
++...
T Consensus 318 l~~~~ 322 (326)
T 2qm1_A 318 LALQF 322 (326)
T ss_dssp HGGGG
T ss_pred HHHHh
Confidence 87643
No 59
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=62.57 E-value=22 Score=34.27 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCe-EEEecCCcCC--HH-----HHHHHHh------H-hCCceEeecCCChhHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRR-IIATGGASAN--QT-----ILSCLAS------I-YGCDIYTVQRPDSASL 416 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~-i~~~GGga~s--~~-----~~Qi~Ad------v-lg~pV~~~~~~e~~al 416 (488)
++++-..+.++..+...+..+ .++. |++.||.+.. ++ +.+.+.+ . -..||......+++.+
T Consensus 243 ~~~~~~~~~Lg~~i~~l~~~l----~P~~gvvigGGi~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~l~ 318 (332)
T 1sz2_A 243 RALSLFCVIMGRFGGNLALNL----GTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDNPGLL 318 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TCTTEEEEECSSSGGGHHHHHHSSHHHHHHCCGGGHHHHTTCCEEEECCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----CCCeEEEEEChhhhhHHHHhccHHHHHHHHhcCchhhHHhCceEEEEECCchhHH
Confidence 344444445555555555555 3565 8888888864 22 2333322 1 2456776656778899
Q ss_pred HHHHHHHhc
Q 011357 417 GAALRAAHG 425 (488)
Q Consensus 417 GaA~~A~~~ 425 (488)
|||.++...
T Consensus 319 GAa~l~~~~ 327 (332)
T 1sz2_A 319 GSGAHLRQT 327 (332)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987654
No 60
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=61.41 E-value=15 Score=37.68 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=34.8
Q ss_pred CeEEEecCCcCCHHHHHHHH----hHh--------CCceEeecCCChhHHHHHHHHHhc
Q 011357 379 RRIIATGGASANQTILSCLA----SIY--------GCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 379 ~~i~~~GGga~s~~~~Qi~A----dvl--------g~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
..|.+.||..+.+.+.+.+. +++ +++|......+++.+|||++|+++
T Consensus 385 ~~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~dgsg~GAAl~aa~~ 443 (457)
T 2yhx_A 385 GHIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAIDGXGAASXVIXSIA 443 (457)
T ss_dssp EEEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECCCTTTHHHHHHHHHH
T ss_pred EEEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceEEEECCCchhhhHHHHHHHH
Confidence 45666666645566665554 666 447888788999999999999987
No 61
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=60.76 E-value=22 Score=34.10 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC-HHHHHHHHhHh-----------CCceEeec-CCChhHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIY-----------GCDIYTVQ-RPDSASLGA 418 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s-~~~~Qi~Advl-----------g~pV~~~~-~~e~~alGa 418 (488)
++++-..+-++..+...+..+ .++.|++.||.+++ +.+.+.+-+.+ ..+|.... ..+++++||
T Consensus 231 ~~~~~~~~~La~~i~~l~~~l----~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GA 306 (321)
T 3vgl_A 231 DSFRELARWAGAGLADLASLF----DPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGA 306 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHH
Confidence 344444555555555555555 35789998888865 55443332222 12454444 456888999
Q ss_pred HHHHHhc
Q 011357 419 ALRAAHG 425 (488)
Q Consensus 419 A~~A~~~ 425 (488)
|.++..+
T Consensus 307 a~l~~~~ 313 (321)
T 3vgl_A 307 ADLARQG 313 (321)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9999877
No 62
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=59.61 E-value=38 Score=32.61 Aligned_cols=49 Identities=12% Similarity=-0.020 Sum_probs=30.9
Q ss_pred ccHHHHHHcCCCCCCeEEeccChhHHhhhcc---CC--CCCCcEEEEeccccccccccC
Q 011357 191 IAPYFVERFHFNKNCLVVQWSGDNPNSLAGL---TL--STSGDLAISLGTSDTVFGITD 244 (488)
Q Consensus 191 v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~---g~--~~~g~~~~s~GTs~~~~~~~~ 244 (488)
+.+.+.+++| +||.. ..|..++++|- |. -....+++++||+-....+.+
T Consensus 123 l~~~l~~~~~----~pv~v-~NDa~aaal~E~~~g~~~~~~~~v~i~~GtGiG~gii~~ 176 (343)
T 2yhw_A 123 LRTPLSDTLH----LPVWV-DNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIIHQ 176 (343)
T ss_dssp CHHHHHHHHC----SCEEE-EEHHHHHHHHHHHTSTTTTCSCEEEEEESSSEEEEEEET
T ss_pred HHHHHHHHHC----CCEEE-echhHHHHHHHHHhCCCCCCCcEEEEEECCCEEEEEEEC
Confidence 3445555665 45554 67999998873 22 234568899999865544544
No 63
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=58.09 E-value=39 Score=33.19 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC-HHHHHHHHhHh--------CCceEeec-CCChhHHHHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIY--------GCDIYTVQ-RPDSASLGAALR 421 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s-~~~~Qi~Advl--------g~pV~~~~-~~e~~alGaA~~ 421 (488)
++++-..+.++..+..++..+ .++.|++.||.++. +.+.+.+...+ ..+|.... ..++.++|||.+
T Consensus 293 ~~l~~~~~~La~~i~~l~~~l----dP~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l 368 (380)
T 2hoe_A 293 EYFDDIARYFSIGLLNLIHLF----GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVH 368 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHH
Confidence 445555555666666666665 35788888888764 55544433322 23455543 456789999998
Q ss_pred HHhc
Q 011357 422 AAHG 425 (488)
Q Consensus 422 A~~~ 425 (488)
+...
T Consensus 369 ~~~~ 372 (380)
T 2hoe_A 369 ALEN 372 (380)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 64
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=55.23 E-value=21 Score=35.34 Aligned_cols=70 Identities=9% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHH-HHHHHHhHhCC--ceEee-cCC--ChhHHHHHHHHH
Q 011357 354 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQT-ILSCLASIYGC--DIYTV-QRP--DSASLGAALRAA 423 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~-~~Qi~Advlg~--pV~~~-~~~--e~~alGaA~~A~ 423 (488)
.+.+++-.+..+...+-.+.. +..++.|+++||.+++.. +.+.+.+.+.. |+.+. ... ++.++|||.++.
T Consensus 270 a~~~l~~~~~~la~~i~~l~~~l~~~p~~IvlgGgi~~~~~~l~~~i~~~l~~~~~~~i~~~~~~~~a~~~GAa~l~~ 347 (381)
T 1saz_A 270 AKRVYRAMAYQIAKWIGKMAAVLKGEVDFIVLTGGLAHEKEFLVPWITKRVSFIAPVLVFPGSNEEKALALSALRVLR 347 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSEEEEEEGGGGCTTTHHHHHHHHHTTTSCEEEEEBCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcCccChHHHHHHHHHHHHhhcCeEEEecCcchhHHHHHHHHHHc
Confidence 344444444444444433221 125789999999986533 55555444432 44443 222 367889887753
No 65
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=54.84 E-value=20 Score=33.80 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC--HHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhc
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN--QTILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s--~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
...+.+++-.+..+...+ .+..-..++.|++.||.+++ +.+.+.+... ..++..+. ++...||+.+|...
T Consensus 210 ~~A~~i~~~~~~~La~~i-~~~~~~~p~~vvlgGGv~~~~~~~l~~~l~~~-~~~i~~~~--~a~~~GA~~la~~~ 281 (291)
T 1zbs_A 210 PAVYSLVQNSFDDFLVRN-VLRYNRPDLPLHFIGSVAFHYREVLSSVIKKR-GLTLGSVL--QSPMEGLIQYHHNN 281 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH-TGGGCCTTSCEEEESHHHHHTHHHHHHHHHHT-TCCEEEEE--SCSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-hcccCCCCceEEEECchHHhhHHHHHHHHHHc-CCeecccC--cCHHHHHHHHHHhh
Confidence 566677777777776666 33211256789998988877 4444444332 23444433 78899999998765
No 66
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=48.75 E-value=57 Score=30.94 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHH----HHHhHh----CCc---------eEeec-CCChh
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILS----CLASIY----GCD---------IYTVQ-RPDSA 414 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Q----i~Advl----g~p---------V~~~~-~~e~~ 414 (488)
.++-..+.++..+...+..+ .++.|++.||.++.+.+.+ -+...+ ..| |.... ..++.
T Consensus 204 ~~~~~~~~La~~i~nl~~~l----dPe~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~ 279 (302)
T 3epq_A 204 VWELEGYYIAQALAQYILIL----APXXIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAG 279 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCSCEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----CchhhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHH
Confidence 44455566777777777666 4688999888886643332 222222 122 44333 34678
Q ss_pred HHHHHHHHHhc
Q 011357 415 SLGAALRAAHG 425 (488)
Q Consensus 415 alGaA~~A~~~ 425 (488)
++|||.++...
T Consensus 280 l~GAa~l~~~~ 290 (302)
T 3epq_A 280 IIGTLVLAHQA 290 (302)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999998765
No 67
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=47.69 E-value=53 Score=31.08 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCc-CC-HHHHHHHHhHhC--------CceEeec-CCChhHHHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGAS-AN-QTILSCLASIYG--------CDIYTVQ-RPDSASLGAAL 420 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga-~s-~~~~Qi~Advlg--------~pV~~~~-~~e~~alGaA~ 420 (488)
++++-..+.++..+...+..+ .++.|++.||.+ +. +.+.+.+.+.+. .+|.... ..+++++|||.
T Consensus 216 ~~~~~~~~~l~~~i~~l~~~~----~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~ 291 (302)
T 3vov_A 216 RLVLQAARYVGIGLASLVKAF----DPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAAL 291 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----CCCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHH
Confidence 344444555555555555555 367888888888 64 555554443332 1244444 35678889999
Q ss_pred HHHhc
Q 011357 421 RAAHG 425 (488)
Q Consensus 421 ~A~~~ 425 (488)
++...
T Consensus 292 l~~~~ 296 (302)
T 3vov_A 292 TAYLE 296 (302)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 68
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=46.93 E-value=56 Score=32.32 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC-HHHHHHHHhHh----------CCceEeec-CCChhHHHHHH
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIY----------GCDIYTVQ-RPDSASLGAAL 420 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s-~~~~Qi~Advl----------g~pV~~~~-~~e~~alGaA~ 420 (488)
+++-..+.++..+..++..+ .++.|++.||.++. +.+.+.+.+.+ ..+|.... ..+++++|||+
T Consensus 314 ~l~~~~~~L~~~i~~l~~~l----dP~~IvlgG~i~~~~~~l~~~i~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~ 389 (406)
T 1z6r_A 314 IITGVGAHVGRILAIMVNLF----NPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL 389 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----CCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCCCCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCCEEEEeCccchhhHHHHHHHHHHHHHhcccccCCCcEEEEeCCCChHHHHHHHH
Confidence 34444444555555555555 35788888888754 55554333321 34566544 45688999976
Q ss_pred HH
Q 011357 421 RA 422 (488)
Q Consensus 421 ~A 422 (488)
+.
T Consensus 390 ~~ 391 (406)
T 1z6r_A 390 VK 391 (406)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 69
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=45.86 E-value=21 Score=36.46 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=33.4
Q ss_pred HHHHcCCCCCCeEEeccChhHHhhhccCCCCC-CcEEEEeccccccccccC
Q 011357 195 FVERFHFNKNCLVVQWSGDNPNSLAGLTLSTS-GDLAISLGTSDTVFGITD 244 (488)
Q Consensus 195 ~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~-g~~~~s~GTs~~~~~~~~ 244 (488)
+-++-|++ +.|++-.-|+.+++++..-..+ ..+.+++||+..-..+.+
T Consensus 181 al~r~~l~--v~v~al~NDtv~tlla~~y~~~~~~iglIlGTG~na~yve~ 229 (451)
T 1bdg_A 181 ELDKRELN--VKCVAVVNDTVGTLASCALEDPKCAVGLIVGTGTNVAYIED 229 (451)
T ss_dssp HHHTTTCC--EEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEE
T ss_pred HHHHcCCC--cceEEEEEchHHHHHHhcccCCCcEEEEEEeCCcceEEEEc
Confidence 33333664 6678889999999998665543 356799999976555543
No 70
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=45.45 E-value=50 Score=32.29 Aligned_cols=69 Identities=9% Similarity=0.003 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecC-CcCCHHHHH------HHHhH-h-----------CCceEee-cCC
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGG-ASANQTILS------CLASI-Y-----------GCDIYTV-QRP 411 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GG-ga~s~~~~Q------i~Adv-l-----------g~pV~~~-~~~ 411 (488)
++++-..+-++..+...+..+ .++.|++.|| .++++.+.+ .+... + ..||... ...
T Consensus 283 ~~l~~~~~~L~~~i~~l~~~l----~p~~IvlgGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 358 (373)
T 2q2r_A 283 KAMKKYHEYLMRVGSEASMAL----LPLTIVLVGDNIVNNAFFYRNPQNLKEMHHEALNHEMERFGFQSRVSYLRQKKLL 358 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCSEEEECSHHHHHTHHHHHSHHHHHHHHHHHTCSGGGGGTSGGGCEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----CCCEEEEeCChHhCchhhhcchhHHHHHHHHHhhcccchhhhhcCCcEEEEecCC
Confidence 344444455555555555555 3566777677 566555554 22222 2 2456554 356
Q ss_pred ChhHHHHHHHHHh
Q 011357 412 DSASLGAALRAAH 424 (488)
Q Consensus 412 e~~alGaA~~A~~ 424 (488)
+++++|||.++..
T Consensus 359 ~a~l~GAa~l~~~ 371 (373)
T 2q2r_A 359 NLNLMGCYRCGLD 371 (373)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHh
Confidence 7889999998754
No 71
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=44.99 E-value=31 Score=33.04 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC-HHHHHHHHhH----h----CCceEeec-CCChhHHHHHHH
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASI----Y----GCDIYTVQ-RPDSASLGAALR 421 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s-~~~~Qi~Adv----l----g~pV~~~~-~~e~~alGaA~~ 421 (488)
.+++-..+-++..+..++..+ .++.|++.||.++. +++.++...+ + ..+|.... ..+++++|||.+
T Consensus 248 ~il~~~~~~La~~i~~l~~~l----~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~i~~s~~~~~a~~~GAa~l 323 (327)
T 2ap1_A 248 AHVERYLDLLAVCLGNILTIV----DPDLLVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFL 323 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CCSEEEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEeChhhcchhHHHHHHHHHHHhhccccCCCEEEEcCCCCcHHHHHHHHH
Confidence 345555555565555555555 35678888888764 4444432222 1 23444444 456788999987
Q ss_pred HH
Q 011357 422 AA 423 (488)
Q Consensus 422 A~ 423 (488)
|.
T Consensus 324 al 325 (327)
T 2ap1_A 324 HL 325 (327)
T ss_dssp TS
T ss_pred Hh
Confidence 53
No 72
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=43.94 E-value=29 Score=35.69 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=36.7
Q ss_pred cccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCC-CCcEEEEecccccccccc
Q 011357 188 AGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLST-SGDLAISLGTSDTVFGIT 243 (488)
Q Consensus 188 ~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~-~g~~~~s~GTs~~~~~~~ 243 (488)
++.+-.++-++-|++ +.|++-.-|+.+++++..-.. ...+.+++||+...+.+.
T Consensus 187 v~~~L~~al~r~gl~--v~v~aivNDtv~tll~~~y~~~~~~iglIlGTG~N~~y~e 241 (485)
T 3o8m_A 187 VVPMLQEQIEKLNIP--INVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYD 241 (485)
T ss_dssp HHHHHHHHHHHTTCC--EEEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEE
T ss_pred HHHHHHHHHHhcCCC--ceEEEEEEcHHHHHHHHhhCCCCcEEEEEEecCcceEEEe
Confidence 333444455555874 778899999999999865433 345679999997654443
No 73
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=43.84 E-value=20 Score=35.16 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCeEEEecCCcCCHH--HHHHHHhHhCCceEeecCCChhHHHHHHHHHhc
Q 011357 349 DPPSEVRALVEGQFLSMRGHAER-FGLPSPPRRIIATGGASANQT--ILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~-l~~g~~~~~i~~~GGga~s~~--~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
+-.++++..++-++-.+...+.. +.+...++.|+++||||.-.. +.+.+.+.+ |.. .++..+.|+|...++..-
T Consensus 261 di~~~i~~a~~~~~~~I~~~i~~~l~~~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~--~~~-~~p~~anA~G~~~~~~~~ 337 (355)
T 3js6_A 261 DFKDEFYKEQDSLIEEVMSNFEITVGNINSIDRIIVTGGGANIHFDSLSHYYSDVF--EKA-DDSQFSNVRGYEKLGELL 337 (355)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCCTTSCSEEEEESTTHHHHHHHHHHHSSSCE--ECC-SSGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhchhhccEEEEECcchhcchhhHHHHHHHHC--CCC-CCcHHHHHHHHHHHHHHH
Confidence 44556666665555555554443 333224688999999997332 445666666 333 445568899998887654
No 74
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=42.40 E-value=11 Score=42.25 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=27.9
Q ss_pred CeEEeccChhHHhhhccCCC-CCCcEEEEeccccccccccC
Q 011357 205 CLVVQWSGDNPNSLAGLTLS-TSGDLAISLGTSDTVFGITD 244 (488)
Q Consensus 205 ~pV~~g~~D~~aa~lg~g~~-~~g~~~~s~GTs~~~~~~~~ 244 (488)
+.+++-.-|+.|+++|---. ....+.+++||+..-..+.+
T Consensus 201 v~~val~NDa~~tll~e~~~~~~~~iglilGTGvngg~i~~ 241 (917)
T 1cza_N 201 ANIVAVVNDTVGTMMTCGYDDQHCEVGLIIGTGTNACYMEE 241 (917)
T ss_dssp CCEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEEE
T ss_pred ceEEEEEEhhHHHHHHhhccCCCcEEEEEEECCcceEEEec
Confidence 33677789999999986433 24567899999876544443
No 75
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=42.19 E-value=75 Score=31.72 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCC-HHHHHHHHhHh----------CCceEeec-CCChhHHHHHH
Q 011357 353 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIY----------GCDIYTVQ-RPDSASLGAAL 420 (488)
Q Consensus 353 ~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s-~~~~Qi~Advl----------g~pV~~~~-~~e~~alGaA~ 420 (488)
+++-..+.++..+..++..+ .++.|++.||.++. +.+.+.+-..+ ..+|.... ..+ +++|||.
T Consensus 337 il~~~~~~L~~~i~~l~~~l----dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~I~~s~l~~~-~~~GAa~ 411 (429)
T 1z05_A 337 VIQQLGRYLGAAIAIVINLF----NPEKILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFYKQ-ATMPGAA 411 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----CCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCSSC-TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCCEEEEeCccccchHHHHHHHHHHHHHhcccccCCCcEEEEecCCCc-cHHHHHH
Confidence 34444455555555555555 36788888888763 44443332211 34566544 345 8999999
Q ss_pred HHHhc
Q 011357 421 RAAHG 425 (488)
Q Consensus 421 ~A~~~ 425 (488)
++...
T Consensus 412 l~~~~ 416 (429)
T 1z05_A 412 LIKQA 416 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 76
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=40.60 E-value=10 Score=37.99 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCeEEEecCCcCCHHHHHHHHhHhCCc----------------------eEeec---CCChhHHHHHHHHHhc
Q 011357 378 PRRIIATGGASANQTILSCLASIYGCD----------------------IYTVQ---RPDSASLGAALRAAHG 425 (488)
Q Consensus 378 ~~~i~~~GGga~s~~~~Qi~Advlg~p----------------------V~~~~---~~e~~alGaA~~A~~~ 425 (488)
++.|+++||.|+-+.+.+.+.+-++.. |.+.. ...++.+|++++|...
T Consensus 316 ~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~ 388 (418)
T 1k8k_A 316 YKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTP 388 (418)
T ss_dssp HHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSH
T ss_pred HhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcCc
Confidence 467999999999998888877655432 33332 2357888999988743
No 77
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=39.72 E-value=28 Score=32.97 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcC--CHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHhc
Q 011357 352 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASA--NQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 352 ~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~--s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
...+.+++-.+..+...+..+.. ..++.|++.||.++ .+.+.+-+... +.. ...++++|||++|...
T Consensus 226 ~~A~~i~~~~~~~L~~~l~~l~~-~~p~~VvlgGgv~~~~~~~l~~~l~~~----i~~--~~~~~~~GAa~la~~~ 294 (305)
T 1zc6_A 226 PEADALLRQAGEDAWAIARALDP-QDELPVALCGGLGQALRDWLPPGFRQR----LVA--PQGDSAQGALLLLQRP 294 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT-TCCSCEEEESHHHHHTGGGSCHHHHHH----CCC--CSSCHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEECCchHhHHHHHHHHHHhh----ccC--CCCCHHHHHHHHHhhh
Confidence 45667777777777766666653 25678888888764 33443333332 222 3467889999987543
No 78
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=39.18 E-value=33 Score=31.81 Aligned_cols=59 Identities=24% Similarity=0.240 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEecCCcCC-HHHHHHHHhHhCCceEeec-CCChhHHHHHHHHHhc
Q 011357 361 QFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAHG 425 (488)
Q Consensus 361 ia~~~r~~~~~l~~g~~~~~i~~~GGga~s-~~~~Qi~Advlg~pV~~~~-~~e~~alGaA~~A~~~ 425 (488)
++..+...+..+ .++.|++.||.++. +.+.+.+. ...+|.... ..++.++|||.++..-
T Consensus 202 l~~~l~~l~~~l----dP~~IvlgG~i~~~~~~~~~~~~--~~~~i~~s~l~~~a~~~GAa~l~~~~ 262 (267)
T 1woq_A 202 LQRYFSHVEFLF----SPELFIVGGGISKRADEYLPNLR--LRTPIVPAVLRNEAGIVGAAIEIALQ 262 (267)
T ss_dssp HHHHHHHHHHHH----CCSEEEEESGGGGGGGGTGGGCC--CSSCEEECSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCEEEEeChhhcccHHHHHhhc--cCceEEECCcCCcHHHHHHHHHHHhc
Confidence 344445555555 36788888888764 44433322 234566554 3567899999987643
No 79
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=38.65 E-value=9.5 Score=39.80 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=32.4
Q ss_pred CCCeEEEecCCcCCHHHHHHHHhHhCC-ceEeecCCChh
Q 011357 377 PPRRIIATGGASANQTILSCLASIYGC-DIYTVQRPDSA 414 (488)
Q Consensus 377 ~~~~i~~~GGga~s~~~~Qi~Advlg~-pV~~~~~~e~~ 414 (488)
.+..|+++||+|+-+-+.|+..++|+. +|++-....-+
T Consensus 548 ~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiGrP~~~g 586 (610)
T 2d0o_A 548 DIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRG 586 (610)
T ss_dssp GCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGG
T ss_pred ccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccc
Confidence 458899999999999999999999999 99876554433
No 80
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=37.58 E-value=8.1 Score=36.71 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCC---ceEeecCCChhHHHHHHHHHh
Q 011357 354 VRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC---DIYTVQRPDSASLGAALRAAH 424 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~---pV~~~~~~e~~alGaA~~A~~ 424 (488)
.+.+++-.+..+...+ .+..-..++.|++.||.+++ +.+.+...+.. ++..+ .+++.+|||.+|..
T Consensus 210 A~~i~~~~~~~La~~i-~~~~~~~p~~vvlgGGv~~~--l~~~l~~~l~~~~~~i~~~--~~a~~~GAa~la~~ 278 (291)
T 1zxo_A 210 IRQLVMNSFIAFFRRN-VMQYDYKQYPVHFIGSIAYC--YKEILQDAARQTGIQIGKI--LQSPMEGLIQYHSQ 278 (291)
T ss_dssp TTHHHHHHHHHHHTTT-GGGSCTTTSCEEECSHHHHH--THHHHHHHTTTTTCCEEEE--CSCTHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHH-hcccCCCCceEEEECcHHHH--HHHHHHHHHhcCCcEEeec--CCCHHHHHHHHHHH
Confidence 3444444444444444 33211256788888888877 44444444543 44443 46788999987543
No 81
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=37.04 E-value=14 Score=38.73 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=30.8
Q ss_pred CCCeEEEecCCcCCHHHHHHHHhHhCC-ceEeecCC
Q 011357 377 PPRRIIATGGASANQTILSCLASIYGC-DIYTVQRP 411 (488)
Q Consensus 377 ~~~~i~~~GGga~s~~~~Qi~Advlg~-pV~~~~~~ 411 (488)
.+..|+++||+|+-+-+.|+..++|+. +|++-...
T Consensus 550 ~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiGrP~ 585 (607)
T 1nbw_A 550 DIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGN 585 (607)
T ss_dssp TCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECC
T ss_pred ccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCC
Confidence 458899999999999999999999999 99875444
No 82
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=35.42 E-value=10 Score=30.79 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=27.3
Q ss_pred HHHH-HHHhhhCCchhhhccccccchhhHHHHHh
Q 011357 106 GPQI-RKLFQTQPGVYDDTERISVVSSFMASLLI 138 (488)
Q Consensus 106 ~~kl-~wl~~~~Pe~~~~~~~~l~~~dyl~~~LT 138 (488)
..|+ .|+++|..+++.|...-..=.|||.|.+|
T Consensus 78 ~akvekwf~rnc~~v~gr~cta~EK~d~l~~l~~ 111 (112)
T 1dw0_A 78 SARVEKWLGRNCNSVIGRDCTPGEKADLLAWLAA 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHcccCCHHHHHHHHHHHHh
Confidence 3444 49999999999998877777899999886
No 83
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=34.33 E-value=80 Score=29.53 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHHHh
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAH 424 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A~~ 424 (488)
|...|-..++-|++..+..+++++.+ + ..-+|+++||.+ +++++.+..+... .++-+..|-.++.-.
T Consensus 184 T~~ai~sGi~~g~~g~i~~~i~~~~~e~~-~~~~vi~TGG~a------~~l~~~~~~~~~~--~~~LvL~GL~~i~~~ 252 (268)
T 2h3g_X 184 TVSAMQSGILYGYVGQVEGIVKRMKEEAK-QEPKVIATGGLA------KLISEESNVIDVV--DPFLTLKGLYMLYER 252 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SCCEEEEESTTH------HHHHHHCSSCSEE--CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEECCCH------HHHHhhCCCCCEE--CcchHHHHHHHHHHh
Confidence 78889999999999999999988864 3 345799999975 4567777766554 356777787776654
No 84
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=29.13 E-value=46 Score=33.75 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=34.0
Q ss_pred eEEEecCCc-CCHHHHHHHHhHh----C-CceEeecCCChhHHHHHHHHHhc
Q 011357 380 RIIATGGAS-ANQTILSCLASIY----G-CDIYTVQRPDSASLGAALRAAHG 425 (488)
Q Consensus 380 ~i~~~GGga-~s~~~~Qi~Advl----g-~pV~~~~~~e~~alGaA~~A~~~ 425 (488)
.|-+.|+.- +.|.+.+++...+ + ++|......+++.+|||++||++
T Consensus 386 ~VgvDGsvy~~~P~f~~~l~~~l~~l~~~~~v~~~~s~DGSg~GAAl~AA~a 437 (445)
T 3hm8_A 386 SVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVA 437 (445)
T ss_dssp EEEEECHHHHHCTTHHHHHHHHHHHHCTTEEEEEEECSSCHHHHHHHHHHHH
T ss_pred EEEEeceehccChhHHHHHHHHHHHhCCCCcEEEEECCCCchHHHHHHHHHH
Confidence 455555554 6677776666554 3 57887778899999999999987
No 85
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=25.81 E-value=39 Score=34.60 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=39.2
Q ss_pred CcccccccHHHHHHcCCCCCCeEEeccChhHHhhhccCCCCC-CcEEEEeccccccccc
Q 011357 185 HAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTS-GDLAISLGTSDTVFGI 242 (488)
Q Consensus 185 ~~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lg~g~~~~-g~~~~s~GTs~~~~~~ 242 (488)
|.-++.+-.++-++-|+. .+.|++=.-|+.+.+++..-..+ -.+.+++||++..+.+
T Consensus 183 G~DVv~lL~~al~r~g~~-~v~v~AlvNDTVgTL~s~aY~~~~~~iGlI~GTGtNa~Y~ 240 (470)
T 3f9m_A 183 GNNVVGLLRDAIKRRGDF-EMDVVAMVNDTVATMISCYYEDHQCEVGMIVGTGCNACYM 240 (470)
T ss_dssp TSBHHHHHHHHHHHHCSC-CCEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEE
T ss_pred CccHHHHHHHHHHhcCCC-CCcEEEEEEcCHHHHHhcccCCCCceEEEEEecCCceEEe
Confidence 444445555666666742 58899999999999987655443 3566899999765443
No 86
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=24.74 E-value=59 Score=24.43 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=25.0
Q ss_pred cHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCe
Q 011357 163 SKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCL 206 (488)
Q Consensus 163 ~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~p 206 (488)
-+++|+.++ . .++||.|..++ -+|+.+|++.|--
T Consensus 20 k~~lL~~y~i~--~~qLPrI~~~D--------Pvar~~G~k~GdV 54 (78)
T 1hmj_A 20 VEEILKRYNIK--IQQLPKIYEDD--------PVIQEIGAKEGDV 54 (78)
T ss_pred HHHHHHHcCCC--HHHCCeeeCcC--------HhhHHhCCCCCCE
Confidence 456999999 6 79999987643 4567778877643
No 87
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=24.60 E-value=75 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=25.4
Q ss_pred cHHHHHHcC-cchHhhcCCcccCCcccccccHHHHHHcCCCCCCeE
Q 011357 163 SKIVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLV 207 (488)
Q Consensus 163 ~~~ll~~~g-~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV 207 (488)
-+++|+.++ . .++||.|..++ -+|+.+|++.|--|
T Consensus 22 k~~lL~~y~i~--~~qLP~I~~~D--------Pvar~~G~k~GdVv 57 (77)
T 1eik_A 22 AKRVLKELDAH--PEQLPKIKTTD--------PVAKAIGAKRGDIV 57 (77)
T ss_dssp HHHHHHHTTCC--TTTSCCCBTTS--------HHHHGGGCCTTCEE
T ss_pred HHHHHHHcCCC--HHHCCeeeCcC--------HhhHHhCCCCCCEE
Confidence 356999999 6 79999987643 45677788776433
No 88
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=23.37 E-value=1.7e+02 Score=28.94 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=43.3
Q ss_pred CCCeEEE--ecCCcCCHHHHHHHHhH-----hCCceEeecCCChhHHHHHHHHHhccccccCCCC--CCHHHHHHh
Q 011357 377 PPRRIIA--TGGASANQTILSCLASI-----YGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSF--VPISNMYKD 443 (488)
Q Consensus 377 ~~~~i~~--~GGga~s~~~~Qi~Adv-----lg~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~--~~~~~a~~~ 443 (488)
.++-|++ .||..+.+...+-+.+. .++||.+--.....-.|-.++.-.+ +..+ +++++|.++
T Consensus 310 ~v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~~~l~~~g-----~~~~~~~~~~~aa~~ 380 (388)
T 2nu8_B 310 KVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSG-----LNIIAAKGLTDAAQQ 380 (388)
T ss_dssp TCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTC-----SSEEECSSHHHHHHH
T ss_pred CCCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHCC-----CceecCCCHHHHHHH
Confidence 4555555 78889988888877776 4779875322223567888887666 6677 888888764
No 89
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=22.90 E-value=44 Score=29.77 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHHHcCcchHhhcCCcccCCcccccccHHHHHHcCCCCCCeEEeccC----hhHHhhhccCCCCCCcEEEEeccccc
Q 011357 164 KIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSG----DNPNSLAGLTLSTSGDLAISLGTSDT 238 (488)
Q Consensus 164 ~~ll~~~g~~~~~~LP~i~~~~~~~G~v~~~~A~~~GL~~g~pV~~g~~----D~~aa~lg~g~~~~g~~~~s~GTs~~ 238 (488)
-+.++...||..+.||-+.+ .++..++ +.+ ++||++|+. +....++.+ |-..+|+|+-..
T Consensus 120 ~~~i~~~~PD~iEiLPGi~p--~iI~~i~----~~~----~~PiIaGGlI~~~edv~~al~a-----GA~aVsTs~~~L 183 (192)
T 3kts_A 120 VALIQKVQPDCIELLPGIIP--EQVQKMT----QKL----HIPVIAGGLIETSEQVNQVIAS-----GAIAVTTSNKHL 183 (192)
T ss_dssp HHHHHHHCCSEEEEECTTCH--HHHHHHH----HHH----CCCEEEESSCCSHHHHHHHHTT-----TEEEEEECCGGG
T ss_pred HHHHhhcCCCEEEECCchhH--HHHHHHH----Hhc----CCCEEEECCcCCHHHHHHHHHc-----CCeEEEeCCHHH
Confidence 34556655665788887664 4554444 443 689998764 344444544 445788877654
No 90
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=21.76 E-value=73 Score=29.92 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~ 421 (488)
|...|-..++-|++..+...++++++ + +.-+|+++||.++ ++++.+. +... .++-+..|-.++
T Consensus 203 T~~ai~sGi~~g~~g~Ie~~i~~~~~e~~-~~~~vi~TGG~a~------~l~~~~~-~~~~--d~~LvL~GL~~i 267 (271)
T 2f9w_A 203 TAEAVERGCLLMLRGFVREQYAMACELLG-PDCEIFLTGGDAE------LVRDELA-GARI--MPDLVFVGLALA 267 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEESTTGG------GTGGGCT-TCEE--CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEECCCHH------HHHhhCC-CCEE--CcChHHHHHHHH
Confidence 78889999999999999999988864 4 3357999999875 3455555 4333 345666665544
No 91
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=21.47 E-value=62 Score=29.89 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceEeecCCChhHHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRA 422 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~~~~~~e~~alGaA~~A 422 (488)
|...|-..++-|.+..+...++++.+..+.-+|+++||.++ ++++ +..+... .++-+..|-.++.
T Consensus 182 T~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~vi~TGG~a~------~l~~-~~~~~~~--~~~L~l~GL~~i~ 246 (249)
T 3bex_A 182 TEENIRLGVVNGSVYALEGIIGRIKEVYGDLPVVLTGGQSK------IVKD-MIKHEIF--DEDLTIKGVYHFC 246 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEESTTSG------GGGG-GSCCSEE--CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCChH------HHhc-CCCCcEE--CcCcHHHHHHHHH
Confidence 78889999999999999988887754113457999999875 3455 5544443 3456666765543
No 92
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=21.39 E-value=40 Score=32.79 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEecCCcCCHHHHHHHHhHhCCceE-----e-ec-CCChhHHHHHHH
Q 011357 349 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIY-----T-VQ-RPDSASLGAALR 421 (488)
Q Consensus 349 ~~~~~~rAvlEgia~~~r~~~~~l~~g~~~~~i~~~GGga~s~~~~Qi~Advlg~pV~-----~-~~-~~e~~alGaA~~ 421 (488)
+..++.+.++|-..-.+...++.+-+...+++|+++||| +.+..-+|+. +|+. + ++ ..-+.|+|+|++
T Consensus 247 ~~~~lA~~~~~~q~~~I~~av~~v~~~~~~~~vv~aG~G---~~L~~~la~~--~~~~~~~~~i~~~~s~vapA~avA~l 321 (334)
T 3cet_A 247 DAENIAKNYYELWKELILENVENVAEKYGSKKVVITGLG---ENILKDALAD--FEVISVAERYGKDVSLATPSFAVAEL 321 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEESTT---HHHHHHHTTT--SEEEEHHHHHCHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCc---HHHHHHHHhh--CCeeehhcccCcccccccCHHHHHHH
Confidence 466777777777777777776554321123489999988 4666666655 6766 2 11 122456677665
No 93
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=20.54 E-value=65 Score=32.28 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCeEEEecCCc-CCHHHHHHHHhHh
Q 011357 354 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS-ANQTILSCLASIY 401 (488)
Q Consensus 354 ~rAvlEgia~~~r~~~~~l~~--g~~~~~i~~~GGga-~s~~~~Qi~Advl 401 (488)
.+-++|-.+|.++..+-.+.. | .++.|+++||.. +|+.+++.+.+-+
T Consensus 306 A~lA~d~f~yri~k~IGa~aa~Lg-gvDaIVFTgGIGEns~~vR~~i~~~l 355 (415)
T 2e1z_A 306 ARLAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSVLIRQLVIEHL 355 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCS-SCCEEEEEHHHHHHCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECccccccCHHHHHHHHhhH
Confidence 445888999999988877653 4 489999999999 9999988877654
No 94
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=20.21 E-value=28 Score=34.55 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=21.5
Q ss_pred CCeEEEecCCcCCHHHHHHHHhHhCC-----------------ceEeec---CCChhHHHHHHHHHhc
Q 011357 378 PRRIIATGGASANQTILSCLASIYGC-----------------DIYTVQ---RPDSASLGAALRAAHG 425 (488)
Q Consensus 378 ~~~i~~~GGga~s~~~~Qi~Advlg~-----------------pV~~~~---~~e~~alGaA~~A~~~ 425 (488)
.+.|+++||+|.-+-+.+.+.+-++. +|.+.. ...++-+|++++|...
T Consensus 298 ~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~ 365 (394)
T 1k8k_B 298 YKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIM 365 (394)
T ss_dssp HTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC-----------------------
T ss_pred HhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCc
Confidence 35699999999998888777766653 454422 2346667888887643
No 95
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=20.18 E-value=1.9e+02 Score=28.58 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=43.3
Q ss_pred CCCeEE--EecCCcCCHHHHHHHHhHh-----CCceEeecCCChhHHHHHHHHHhccccccCCCC--CCHHHHHHh
Q 011357 377 PPRRII--ATGGASANQTILSCLASIY-----GCDIYTVQRPDSASLGAALRAAHGYLCSKKGSF--VPISNMYKD 443 (488)
Q Consensus 377 ~~~~i~--~~GGga~s~~~~Qi~Advl-----g~pV~~~~~~e~~alGaA~~A~~~~~~~~~G~~--~~~~~a~~~ 443 (488)
.++-|+ +.||..+.+...+-+.+.+ ++||.+--.....-.|-.++.-.+ +..| +++++|.++
T Consensus 317 ~v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~~L~~~g-----l~~~~~~~~~~Aa~~ 387 (395)
T 2fp4_B 317 KVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSG-----LPITSAVDLEDAAKK 387 (395)
T ss_dssp TCCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTC-----SCCEECSSHHHHHHH
T ss_pred CCCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHCC-----CceEeCCCHHHHHHH
Confidence 345544 5688899888888777664 578875322223456888888777 7778 999998774
Done!