Query         011358
Match_columns 488
No_of_seqs    321 out of 2994
Neff          8.6 
Searched_HMMs 29240
Date          Mon Mar 25 06:29:06 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011358hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 4aps_A DI-OR tripeptide H+ sym  99.9 2.1E-22 7.2E-27  210.7  31.3  347   65-476     9-374 (491)
  2 2xut_A Proton/peptide symporte  99.9   6E-24   2E-28  224.4  19.1  358   68-475    11-392 (524)
  3 3o7q_A L-fucose-proton symport  99.8 1.1E-17 3.7E-22  171.8  30.8  181   65-278    22-228 (438)
  4 1pw4_A Glycerol-3-phosphate tr  99.8 2.4E-17 8.1E-22  169.7  21.6  182   66-280    25-207 (451)
  5 4gc0_A D-xylose-proton symport  99.7 1.2E-17 4.3E-22  174.2  17.0  133  105-254    55-187 (491)
  6 2gfp_A EMRD, multidrug resista  99.7 9.6E-16 3.3E-20  154.2  17.1  167   72-274     3-169 (375)
  7 1pw4_A Glycerol-3-phosphate tr  99.5 3.4E-13 1.2E-17  138.5  18.4  180   68-279   251-433 (451)
  8 2cfq_A Lactose permease; trans  99.4 1.5E-13 5.1E-18  140.8   7.9  170   69-269     7-177 (417)
  9 3o7q_A L-fucose-proton symport  99.4 9.8E-12 3.4E-16  127.1  18.7  168   69-274   258-427 (438)
 10 2cfq_A Lactose permease; trans  99.4 7.8E-12 2.7E-16  128.0  15.5  174   71-279   222-399 (417)
 11 4gc0_A D-xylose-proton symport  99.1 4.1E-10 1.4E-14  117.0  15.1  181   72-283   280-466 (491)
 12 4aps_A DI-OR tripeptide H+ sym  99.1 1.1E-10 3.7E-15  121.5  10.3  185   71-282   285-474 (491)
 13 2gfp_A EMRD, multidrug resista  98.8 1.4E-09 4.9E-14  108.8   4.2  164   69-266   199-363 (375)
 14 2xut_A Proton/peptide symporte  98.1 1.3E-06 4.3E-11   91.4   3.5   90  186-281   404-504 (524)

No 1  
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91  E-value=2.1e-22  Score=210.65  Aligned_cols=347  Identities=19%  Similarity=0.252  Sum_probs=234.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchhHH
Q 011358           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYWT  138 (488)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~-~~Gr~~~  138 (488)
                      +++++.++.+.+..++..+.+|++..+++.|+++.     +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            44566788999999999999999999999999988     99999999999999999999999999999999 6 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 011358          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (488)
Q Consensus       139 i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (488)
                      +.++.++..++.++++++                            .+...+++++++.|+|.+...++..++++|.+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  139 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE  139 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence            999999999988887764                            2466788999999999999999999999999998


Q ss_pred             CCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccc---CCCC-Cchh
Q 011358          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LPGG-SPLT  294 (488)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~l~  294 (488)
                      ++.+    |+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++++.+++..++....   +|.. ....
T Consensus       140 ~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (491)
T 4aps_A          140 HDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPE  215 (491)
T ss_dssp             CTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHH
T ss_pred             cccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccc
Confidence            7733    788889899999999999999999999989999999998887777776665554433221   1111 1111


Q ss_pred             HHHHHHHH--------HHHhhhccccccccccccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCcccccc
Q 011358          295 RVAQVLVA--------AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTV  366 (488)
Q Consensus       295 ~~~~v~~~--------a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~  366 (488)
                      +..+.+..        +.--  ..        +...+..+          .++................. ...|+... 
T Consensus       216 ~~~~~~~~~g~~l~~~~~~~--~~--------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-  273 (491)
T 4aps_A          216 EVKPLLVKVSLAVAGFIAII--VV--------MNLVGWNS----------LPAYINLLTIVAIAIPVFYF-AWMISSVK-  273 (491)
T ss_dssp             HHHHHHHHCCCCCHHHHHHH--HH--------HHHHSSCC----------TTHHHHHHHHHHHHHHHHHH-HHHC-----
T ss_pred             hhHHHHHHHHHHHHHHHHHH--HH--------HHhccCcc----------cccchhhhhHHHHHHHHHHH-HHHhhccc-
Confidence            11111000        0000  00        00000000          00000000000000000000 00111110 


Q ss_pred             hhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHh-ccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhccc
Q 011358          367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRR  445 (488)
Q Consensus       367 ~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~-m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r  445 (488)
                      ....+.++....++++.....++..+.+..+.+..+... .+.+    ..+.+.+..++.+..++..++.+++.+++.||
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r  349 (491)
T 4aps_A          274 VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN  349 (491)
T ss_dssp             --------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc
Confidence            112345666677788888888899988877765443322 2222    14678888999999999999999998888776


Q ss_pred             ccCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 011358          446 ITGHPRGASQLQRVGIGLAVSILSVIWADTS  476 (488)
Q Consensus       446 ~~~~~~~~s~~~ki~iG~~~~~is~~~~~~~  476 (488)
                      .      +...+++.+|.++.++++++.++.
T Consensus       350 ~------~~~~~~~~~~~~~~~~~~~~~~~~  374 (491)
T 4aps_A          350 Q------PSSPTKFAVGLMFAGLSFLLMAIP  374 (491)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTTHHH
T ss_pred             C------CCchHHHHHHHHHHHHHHHHHHHH
Confidence            3      456678889999988888666554


No 2  
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91  E-value=6e-24  Score=224.40  Aligned_cols=358  Identities=22%  Similarity=0.350  Sum_probs=228.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC------CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 011358           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (488)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i  141 (488)
                      ++.++.+.+..++..+++|++..+++.|+++++|      ++..+++++.+.+.++..++.+++|+++||++|||+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~   90 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW   90 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            4456778888999999999999999999999999      9999999999999999999999999999996599999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCc
Q 011358          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (488)
Q Consensus       142 ~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~  221 (488)
                      +.++..++.++++++.                           .+.+.+++++++.|++.+...++..++++|.+|+++ 
T Consensus        91 ~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-  142 (524)
T 2xut_A           91 LSLIYCVGHAFLAIFE---------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN-  142 (524)
T ss_dssp             HHHHHHHHHHHHHHTS---------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT-
T ss_pred             HHHHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc-
Confidence            9999888888877651                           156778899999999999999999999999999887 


Q ss_pred             hhhhhHh---HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHH
Q 011358          222 DYKTHLD---RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ  298 (488)
Q Consensus       222 ~~~~~r~---~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~  298 (488)
                           |+   ..+++++.+.++|..++|.+++++.+..||++.|++.+++.+++.+.++...++.++.+|.+++..+..+
T Consensus       143 -----r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (524)
T 2xut_A          143 -----KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLP  217 (524)
T ss_dssp             -----TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHH
Confidence                 64   4556689999999999999999998888999999998888777766665554444433333333223233


Q ss_pred             HHHHHHHhhhccccccccc--------cccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCc-------cc
Q 011358          299 VLVAAFRKRHAAFSSSELI--------GLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPW-------KL  363 (488)
Q Consensus       299 v~~~a~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~-------~~  363 (488)
                      .+..+.++++...+.....        ..+..+..+    ....+   .....+......  .  ..+.+|       +.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~  286 (524)
T 2xut_A          218 VIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIP----TLGIV---AGLCCAMVLVMG--F--VGAGASLQLERARKS  286 (524)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHHHHTGGGTT----TTCSS---HHHHHHHHHHHH--H--HHTGGGTHHHHSCCS
T ss_pred             HHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccc----hhhhh---hhhhhhhhhhhc--c--cccchhhHHhhhhcc
Confidence            3333332221100000000        000000000    00000   000000000000  0  001122       11


Q ss_pred             ccchhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHhccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhc
Q 011358          364 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLC  443 (488)
Q Consensus       364 ~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~  443 (488)
                      ++..+.++.|+++..++++.....++..+.+..+.+..+..+++.+.  + ++.+.+..++.+..++..|+.+++..+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (524)
T 2xut_A          287 HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAI  363 (524)
T ss_dssp             CCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC-----
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHH
Confidence            22223455677777778888888888888887777777766665432  2 35677788888888899999998866665


Q ss_pred             ccccCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 011358          444 RRITGHPRGASQLQRVGIGLAVSILSVIWADT  475 (488)
Q Consensus       444 ~r~~~~~~~~s~~~ki~iG~~~~~is~~~~~~  475 (488)
                      +|++.   ..++.+++.+|.++.++++++.++
T Consensus       364 ~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~  392 (524)
T 2xut_A          364 ERMGV---KLTALRKMGAGIAITGLSWIVVGT  392 (524)
T ss_dssp             ----------CCHHHHHTHHHHHHHHHHTTTT
T ss_pred             HhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence            65432   255667788888888887765543


No 3  
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.82  E-value=1.1e-17  Score=171.75  Aligned_cols=181  Identities=12%  Similarity=-0.002  Sum_probs=148.2

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (488)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~  144 (488)
                      +++++.+..+.+..+...+....+.. +..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            34556666666666666666654444 44557789999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (488)
Q Consensus       145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (488)
                      +..++.+++.....                         ..+.+.+++++++.|++.+...+...++++|.+|+++    
T Consensus       100 ~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  150 (438)
T 3o7q_A          100 LYALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----  150 (438)
T ss_dssp             HHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred             HHHHHHHHHHhccc-------------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence            99999888733211                         0367889999999999999999999999999999988    


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------hHHHHHHHHHHHHHHHHHHHH
Q 011358          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI  278 (488)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~-~~~g-------------------------~~~~f~i~~~~~~i~~~~~~~  278 (488)
                        |+..+++++.+.++|..++|.+++++. +..+                         |++.|++.++..++..+.++.
T Consensus       151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999987 5444                         999998766665555444433


No 4  
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.76  E-value=2.4e-17  Score=169.72  Aligned_cols=182  Identities=13%  Similarity=0.054  Sum_probs=148.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (488)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~  145 (488)
                      .+|+.++...+..+...+..+.+...++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~  101 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence            3455566666666666666655555555 455667 9999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (488)
Q Consensus       146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (488)
                      ..++.+++++....                        ..+.+.+++++++.|++.+...+...++++|.+|+++     
T Consensus       102 ~~~~~~~~~~~~~~------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-----  152 (451)
T 1pw4_A          102 AAAVMLFMGFVPWA------------------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-----  152 (451)
T ss_dssp             HHHHHHHHHHCHHH------------------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-----
T ss_pred             HHHHHHHHHhhhhc------------------------cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-----
Confidence            99999888772100                        0245678889999999999999999999999999887     


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 011358          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (488)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~~~  280 (488)
                       |++.+++++.+.++|..++|.+++++.+..| |++.|++.++..++..++.++..
T Consensus       153 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~  207 (451)
T 1pw4_A          153 -RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM  207 (451)
T ss_dssp             -HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence             9999999999999999999999999888888 99999998877666655544443


No 5  
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.75  E-value=1.2e-17  Score=174.20  Aligned_cols=133  Identities=12%  Similarity=0.118  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcch
Q 011358          105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS  184 (488)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (488)
                      ...+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++.........  ..        .-...-.
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~--------~~~~~~a  123 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DN--------TVPVYLA  123 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SS--------SCCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hh--------HHHHHHh
Confidence            4556788889999999999999999998 99999999999999999988864211000000  00        0000011


Q ss_pred             hhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (488)
Q Consensus       185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (488)
                      .+...++++|++.|+|.|+..+....+++|..|++.      |+...++++.+..+|..+++.++..+..
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIAR  187 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence            478899999999999999999999999999999988      9999999999999999999887766543


No 6  
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.67  E-value=9.6e-16  Score=154.23  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011358           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (488)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~  151 (488)
                      +.+.+..++..+....+...++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            34455555555555545554544 5678999999999999999999999999999999998 999999999999999888


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHH
Q 011358          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (488)
Q Consensus       152 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (488)
                      ++...                            .+.+.+++++++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  126 (375)
T 2gfp_A           81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN  126 (375)
T ss_dssp             HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence            88765                            467888999999999999999999999999999888      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 011358          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (488)
Q Consensus       232 ~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~  274 (488)
                      ++++...++|..++|.+++++.+..+|++.|++.++..++..+
T Consensus       127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888999999887666555443


No 7  
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51  E-value=3.4e-13  Score=138.53  Aligned_cols=180  Identities=15%  Similarity=0.122  Sum_probs=148.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHHHHHHHHH
Q 011358           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIY  146 (488)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~~i~i~~~~~  146 (488)
                      .+.++...+..++..+.++++..+++.|+++.+|++..+++.......++..++.++.|+++||+. |||+.+.++..+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            355777888888888888899999999999889999999999999999999999999999999942 8888887776655


Q ss_pred             H-HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358          147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (488)
Q Consensus       147 ~-lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (488)
                      . ++.+++.+.       ++                   .+...+.+..++.|++.+...+...++..|.+|++.     
T Consensus       331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  379 (451)
T 1pw4_A          331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA-----  379 (451)
T ss_dssp             HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred             HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence            5 444433322       10                   245566677778888888888888899999999888     


Q ss_pred             hHhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358          226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (488)
Q Consensus       226 ~r~~~~~~~~~~~~i-G~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~  279 (488)
                       |++.+++++...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus       380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999 999999999999999999999998888777776665553


No 8  
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.42  E-value=1.5e-13  Score=140.83  Aligned_cols=170  Identities=11%  Similarity=-0.122  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (488)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l  148 (488)
                      |..+......++..+.+..+..+++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||+++.++..+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            3455566555665666666677899999999999999999999999999999999999999997 999999988776554


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhH-HHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (488)
Q Consensus       149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (488)
                      +...+......                         ... ..++.++.+.+++.+...+...+...+..++..    +.+
T Consensus        86 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~  136 (417)
T 2cfq_A           86 MFAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRS  136 (417)
T ss_dssp             CHHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHH
T ss_pred             HHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhc
Confidence            32211111000                         000 012233333333333333333333333332211    115


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 011358          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (488)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~  269 (488)
                      +..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus       137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          137 NFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             TCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            656666667778999999999999876 58999888765553


No 9  
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39  E-value=9.8e-12  Score=127.13  Aligned_cols=168  Identities=10%  Similarity=0.004  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358           69 IAALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (488)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~  147 (488)
                      +.++...+..++.....+++..+++.| +++.+|++..+++.....+.++..++.+++|+++||+ |||+.+.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            346666677777777888888999999 8888899999999999999999999999999999997 99999999988877


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (488)
Q Consensus       148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (488)
                      ++.+++...                            .+.. .++..++.+++.+...+...++..|.+|++       +
T Consensus       337 ~~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~  380 (438)
T 3o7q_A          337 ALCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------T  380 (438)
T ss_dssp             HHHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------H
T ss_pred             HHHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------c
Confidence            776666553                            1222 234446788888888888999988988844       4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHH
Q 011358          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM  274 (488)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~  274 (488)
                      +.+.++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++.++
T Consensus       381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            55555544 456999999999999999888 99998887665554433


No 10 
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.35  E-value=7.8e-12  Score=127.98  Aligned_cols=174  Identities=10%  Similarity=0.051  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (488)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~  147 (488)
                      .+...+..++....++....+++.|+.+.++..   ....+.......++..++.+++|+++||+ |||+++.++.++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence            444444444444455556667888887766532   23345555556667778899999999998 99999988887776


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (488)
Q Consensus       148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (488)
                      ++.+++++.                            .+...+++..++.+++.+...+....+.+|.+|++.      |
T Consensus       301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~  346 (417)
T 2cfq_A          301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S  346 (417)
T ss_dssp             HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred             HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            665554432                            133445555556666666666667889999999887      9


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358          228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (488)
Q Consensus       228 ~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~  279 (488)
                      ++..++ ++.+..+|+.++|.++|++.+..|+...|.+.+++.+++.++.+..
T Consensus       347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            999888 5778889999999999999888888888888777777766655443


No 11 
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.14  E-value=4.1e-10  Score=117.00  Aligned_cols=181  Identities=9%  Similarity=-0.006  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011358           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (488)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~  151 (488)
                      .......+......+.+.. ...++.+..+.+............+...++.++++++.||+ |||+.+..+.....++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~  357 (491)
T 4gc0_A          280 IGVMLSIFQQFVGINVVLY-YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF  357 (491)
T ss_dssp             HHHHHHHHHHHTCHHHHHH-HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHh-cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence            3333333333333433443 44455567788877777777777788889999999999998 999999998888777766


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHH
Q 011358          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (488)
Q Consensus       152 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (488)
                      .+.......   .+                   .......+..+..+++ .+..+..+.+.+|.||.+.      |+++.
T Consensus       358 ~l~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~  408 (491)
T 4gc0_A          358 SLGTAFYTQ---AP-------------------GIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKAL  408 (491)
T ss_dssp             HHHHHHHTT---CC-------------------HHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHH
T ss_pred             HHHHHHhcc---cc-------------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHH
Confidence            665442210   00                   1122222222222222 2334667789999999999      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHhcccc
Q 011358          232 NFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLY  283 (488)
Q Consensus       232 ~~~~~~~~iG~~i~~~i~~~i~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~  283 (488)
                      ++.+....+|+.+++.+.+.+.+      ..++...|++.+++.+++.+..++..|+.
T Consensus       409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            99999999999998887766643      23555677777777777776666655543


No 12 
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.13  E-value=1.1e-10  Score=121.54  Aligned_cols=185  Identities=12%  Similarity=0.017  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-----HHHHH
Q 011358           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTI  145 (488)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~-----i~~~~  145 (488)
                      .+.+.+..++....+.....+++.|+.+.++.+....+.......++..++.++.|+++||+ |||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            44455555555566666777888999888888866677777777888888899999999997 9876544     55555


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (488)
Q Consensus       146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (488)
                      ..++.+++........                   ++...+...++++.++.+++.+...+...++..|.+|++.     
T Consensus       364 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-----  419 (491)
T 4aps_A          364 AGLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-----  419 (491)
T ss_dssp             HHHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-----
T ss_pred             HHHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence            5555554444311000                   0001234556677788899999888999999999999998     


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 011358          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (488)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~  282 (488)
                       |+++.++++...++|..+++.+.+++.+. ++.+.|++.+++.+++.++.++..++
T Consensus       420 -~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          420 -NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             -SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999998888654 66677777777766666665555443


No 13 
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.83  E-value=1.4e-09  Score=108.83  Aligned_cols=164  Identities=12%  Similarity=-0.095  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HH
Q 011358           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL  147 (488)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~-~~  147 (488)
                      |.++...+..++.....+++..+++.|+++.+|++..+++.......++..++.++.|+++||+ |++  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4566777777777888888888999999888999999999999999999999999999999997 772  2233222 22


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (488)
Q Consensus       148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (488)
                      .+..++.....     +                   ..+.+.+++..++.+++.+...+...++..|.+| +.      |
T Consensus       276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~  324 (375)
T 2gfp_A          276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A  324 (375)
T ss_dssp             TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred             HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence            22221111100     0                   0245556677778889999889999999999987 55      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 011358          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  266 (488)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~  266 (488)
                      ++..++++...++|..++|.+.+++.+..+|...+++.+
T Consensus       325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999999999988778887776643


No 14 
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.08  E-value=1.3e-06  Score=91.43  Aligned_cols=90  Identities=16%  Similarity=0.143  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ch-----
Q 011358          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW-----  258 (488)
Q Consensus       186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~--g~-----  258 (488)
                      +...++++.++.|++.+...+...++..|.+|++.      |+++.++++...++|+.++|.+.+++.+..  +|     
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~  477 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG  477 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            34556667788899999888999999999999988      999999999999999999999999887632  23     


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhcc
Q 011358          259 ----GSAFGALAIAMGISNMLFFIGTP  281 (488)
Q Consensus       259 ----~~~f~i~~~~~~i~~~~~~~~~~  281 (488)
                          ...|++.+++.+++.+++++..+
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          478 MSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                22366666666666555544443


Done!