BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011362
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 9/160 (5%)
Query: 293 AFKLFDEMQRNGVAADTWTYRT--FIDGLCK-------NGYIVEAVELFHTLRILKCEFD 343
A +L+DE +RNGV + Y ++ L + N + ++F + + K +
Sbjct: 45 ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104
Query: 344 IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFL 403
+ + E+A ++ + + + P + +Y + G C G DKA ++
Sbjct: 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164
Query: 404 DMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443
M E+ VVP L++ + KV + L +++++
Sbjct: 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTT 63
+S GF + +++ P+ TFT+ + A+ A + +++ FG +P + +Y
Sbjct: 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145
Query: 64 LVNGLCR 70
+ G CR
Sbjct: 146 ALFGFCR 152
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 316 IDGLCKNGYIVEAVELFHTLRILKCEFDIRAYN------SLIDGLCKSGR---LEIALEL 366
+D K G ++EA+ L+ R + YN SL + +S L ++
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 367 FRSLPCGVLVPNVVTYS--IMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGF 424
F+ + +VPN T++ + +D +M A D+ M+ + P + ++ + GF
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEM--AFDMVKQMKAFGIQPRLRSYGPALFGF 150
Query: 425 IRINEPSKVIEL 436
R + K E+
Sbjct: 151 CRKGDADKAYEV 162
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 400 DLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMP 447
D+F M + VVPN TF R + ++P +++ +MK + P
Sbjct: 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP 138
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 20 TPDAVTFTSLIKGLCAES-RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVAL 78
+P+A+ L +C++ ++EA L+ + R G + + Y L+ +C +
Sbjct: 24 SPEALLKQKL--DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATES 80
Query: 79 NLFEEMANGNGEFGVV----CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV 134
+ ++ G F + PN T+T + + A +++ QMK I+P +
Sbjct: 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140
Query: 135 VTYTSVIRGFCYAKDWNEA 153
+Y + GFC D ++A
Sbjct: 141 RSYGPALFGFCRKGDADKA 159
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 152 EAKRLFIEMMDQGVQPNVVTFNVIM---------DELCKNGKMDEASRLLDLMIQHGVRP 202
EA RL+ E GVQ + +NV++ E N + + MI V P
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103
Query: 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLY 262
+ T+ A ++ M++ G + + SY + G+C+ + + A +
Sbjct: 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163
Query: 263 SEM 265
+ M
Sbjct: 164 AHM 166
>pdb|2Y7D|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|C Chain C, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|D Chain D, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7E|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Tetragonal Form)
pdb|2Y7E|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Tetragonal Form)
pdb|2Y7F|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|C Chain C, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|D Chain D, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7G|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From C. Cloacamonas Acidaminovorans In
Complex With The Product Acetoacetate
pdb|2Y7G|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From C. Cloacamonas Acidaminovorans In
Complex With The Product Acetoacetate
Length = 282
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 425 IRINEPSKVIELLHKMKEINVMP-----DASIVSIVVDLLAKNEISLNSL 469
I IN P+ +I L K+ NV+P ++ +V V L+ K I+ N L
Sbjct: 124 IFINHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKKGIITQNPL 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,803,476
Number of Sequences: 62578
Number of extensions: 559363
Number of successful extensions: 1292
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 20
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)