Query 011362
Match_columns 487
No_of_seqs 698 out of 2489
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 00:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6E-67 1.3E-71 507.9 57.6 455 1-465 383-863 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6E-65 1.3E-69 493.9 56.7 450 2-461 420-894 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.1E-62 2.4E-67 487.4 46.2 455 2-476 166-652 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.7E-61 3.7E-66 467.8 46.3 455 1-477 100-556 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.3E-60 5.1E-65 470.9 47.8 438 1-465 235-673 (857)
6 PLN03081 pentatricopeptide (PP 100.0 4.3E-59 9.4E-64 451.1 45.3 429 22-471 86-516 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-32 2.4E-37 280.6 55.3 451 2-473 445-895 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-31 2.8E-36 272.9 55.1 450 2-471 343-792 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-24 2.9E-29 221.4 53.3 451 2-472 161-734 (1157)
10 PRK11447 cellulose synthase su 100.0 8.2E-25 1.8E-29 222.9 51.1 422 1-441 282-738 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 5.1E-25 1.1E-29 191.8 34.8 441 2-465 62-506 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 2.3E-24 5E-29 187.7 32.8 425 26-473 51-480 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 5.8E-22 1.3E-26 190.0 51.3 401 25-444 129-572 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 8.2E-22 1.8E-26 189.0 46.2 393 1-408 140-571 (615)
15 PRK11788 tetratricopeptide rep 99.9 4.5E-23 9.7E-28 188.2 32.9 312 141-465 42-363 (389)
16 PRK10049 pgaA outer membrane p 99.9 1.2E-20 2.5E-25 184.3 50.2 430 8-459 2-470 (765)
17 PRK09782 bacteriophage N4 rece 99.9 1.6E-20 3.6E-25 183.3 50.0 446 2-473 58-701 (987)
18 PRK15174 Vi polysaccharide exp 99.9 4E-21 8.6E-26 183.5 44.5 323 1-339 55-382 (656)
19 PRK11788 tetratricopeptide rep 99.9 1.5E-22 3.2E-27 184.9 33.3 307 29-345 41-354 (389)
20 PRK10049 pgaA outer membrane p 99.9 7.7E-21 1.7E-25 185.5 47.0 405 1-423 28-469 (765)
21 PRK15174 Vi polysaccharide exp 99.9 6.8E-21 1.5E-25 181.9 45.4 334 25-373 44-381 (656)
22 KOG2002 TPR-containing nuclear 99.9 3E-20 6.4E-25 170.5 39.4 428 2-444 284-746 (1018)
23 PRK14574 hmsH outer membrane p 99.9 8.5E-19 1.8E-23 167.9 50.1 435 1-453 47-521 (822)
24 KOG2002 TPR-containing nuclear 99.9 6.6E-20 1.4E-24 168.3 39.1 451 6-471 254-738 (1018)
25 PRK09782 bacteriophage N4 rece 99.9 1.6E-18 3.5E-23 169.5 48.7 258 203-472 476-734 (987)
26 PRK14574 hmsH outer membrane p 99.9 8.6E-18 1.9E-22 161.1 49.6 439 23-478 34-520 (822)
27 KOG2003 TPR repeat-containing 99.9 1.8E-18 3.9E-23 146.0 29.7 209 250-465 501-710 (840)
28 KOG4422 Uncharacterized conser 99.8 9E-16 1.9E-20 128.9 41.3 431 23-460 116-607 (625)
29 KOG0495 HAT repeat protein [RN 99.8 1.4E-15 3E-20 134.4 43.8 436 5-465 393-867 (913)
30 KOG4422 Uncharacterized conser 99.8 1.2E-15 2.6E-20 128.1 39.8 397 2-410 129-592 (625)
31 KOG1915 Cell cycle control pro 99.8 4E-15 8.6E-20 126.7 43.1 434 2-457 87-548 (677)
32 KOG2076 RNA polymerase III tra 99.8 2E-15 4.4E-20 138.3 44.4 431 2-443 153-695 (895)
33 KOG2003 TPR repeat-containing 99.8 6.9E-17 1.5E-21 136.6 29.2 410 5-429 218-709 (840)
34 KOG0495 HAT repeat protein [RN 99.8 9.6E-14 2.1E-18 123.0 45.3 441 8-474 366-815 (913)
35 KOG2076 RNA polymerase III tra 99.8 1.2E-14 2.6E-19 133.4 39.5 373 23-406 139-553 (895)
36 KOG1915 Cell cycle control pro 99.8 1.1E-13 2.3E-18 118.1 42.1 416 9-444 60-501 (677)
37 TIGR00540 hemY_coli hemY prote 99.8 5.9E-15 1.3E-19 134.1 32.8 293 33-337 94-398 (409)
38 PRK10747 putative protoheme IX 99.8 1.5E-14 3.3E-19 130.6 33.5 284 35-337 96-389 (398)
39 PRK10747 putative protoheme IX 99.8 2.7E-14 5.8E-19 129.0 34.9 284 147-442 97-389 (398)
40 TIGR00540 hemY_coli hemY prote 99.7 1.8E-14 3.9E-19 130.9 33.4 294 145-442 95-398 (409)
41 KOG1155 Anaphase-promoting com 99.7 5.5E-13 1.2E-17 113.5 37.8 306 142-458 235-549 (559)
42 PF13429 TPR_15: Tetratricopep 99.7 2.9E-17 6.3E-22 141.9 12.7 260 28-300 13-274 (280)
43 PF13429 TPR_15: Tetratricopep 99.7 2.4E-17 5.1E-22 142.4 11.9 254 1-267 21-276 (280)
44 KOG0547 Translocase of outer m 99.7 2E-13 4.4E-18 116.9 35.0 222 214-441 336-564 (606)
45 KOG1155 Anaphase-promoting com 99.7 3.2E-13 7E-18 114.9 35.9 363 22-407 163-535 (559)
46 COG2956 Predicted N-acetylgluc 99.7 8.2E-14 1.8E-18 113.0 29.2 275 35-319 47-325 (389)
47 KOG3785 Uncharacterized conser 99.7 4.5E-13 9.8E-18 110.2 32.3 421 3-453 37-498 (557)
48 KOG1126 DNA-binding cell divis 99.7 8.6E-15 1.9E-19 130.1 24.2 287 38-339 334-621 (638)
49 COG3071 HemY Uncharacterized e 99.7 1.9E-12 4.1E-17 108.5 35.7 292 146-447 96-394 (400)
50 COG2956 Predicted N-acetylgluc 99.7 2.6E-13 5.6E-18 110.1 29.6 288 2-302 49-346 (389)
51 KOG0547 Translocase of outer m 99.7 6.9E-14 1.5E-18 119.7 27.6 421 25-476 117-564 (606)
52 KOG1173 Anaphase-promoting com 99.7 8.9E-13 1.9E-17 115.2 34.1 284 168-459 243-532 (611)
53 COG3071 HemY Uncharacterized e 99.7 8.4E-13 1.8E-17 110.6 31.4 292 71-406 97-388 (400)
54 KOG1126 DNA-binding cell divis 99.7 3.7E-14 8E-19 126.2 24.5 288 148-446 333-623 (638)
55 KOG1156 N-terminal acetyltrans 99.7 1.6E-11 3.5E-16 109.2 38.6 450 2-476 21-509 (700)
56 KOG1156 N-terminal acetyltrans 99.7 2.2E-11 4.7E-16 108.4 38.8 421 1-440 54-508 (700)
57 KOG3785 Uncharacterized conser 99.6 1.1E-11 2.3E-16 102.3 31.4 422 1-465 70-537 (557)
58 KOG1173 Anaphase-promoting com 99.6 9.7E-12 2.1E-16 108.8 31.8 286 131-424 241-532 (611)
59 PRK12370 invasion protein regu 99.6 1.3E-12 2.7E-17 123.6 27.7 269 20-304 253-536 (553)
60 KOG2047 mRNA splicing factor [ 99.6 1.3E-09 2.8E-14 97.3 43.4 461 2-476 116-656 (835)
61 PRK12370 invasion protein regu 99.6 1.2E-11 2.6E-16 117.0 30.8 271 55-339 253-536 (553)
62 PF12569 NARP1: NMDA receptor- 99.6 2E-10 4.3E-15 105.0 37.2 287 1-302 17-333 (517)
63 KOG1129 TPR repeat-containing 99.6 9.7E-13 2.1E-17 107.1 19.0 229 62-302 227-457 (478)
64 KOG4162 Predicted calmodulin-b 99.6 3.2E-10 6.8E-15 103.2 36.8 412 18-443 318-783 (799)
65 KOG2376 Signal recognition par 99.6 4.9E-10 1.1E-14 98.9 36.9 137 324-463 356-506 (652)
66 TIGR02521 type_IV_pilW type IV 99.6 7.4E-12 1.6E-16 105.9 25.8 197 60-266 33-230 (234)
67 KOG2047 mRNA splicing factor [ 99.5 5.4E-09 1.2E-13 93.4 42.6 443 4-466 154-675 (835)
68 KOG1129 TPR repeat-containing 99.5 1.7E-12 3.6E-17 105.7 18.9 231 207-443 226-458 (478)
69 KOG4162 Predicted calmodulin-b 99.5 1.3E-09 2.8E-14 99.3 38.0 125 347-475 653-780 (799)
70 KOG1174 Anaphase-promoting com 99.5 1E-09 2.2E-14 92.8 33.9 270 166-444 229-501 (564)
71 TIGR02521 type_IV_pilW type IV 99.5 4E-11 8.8E-16 101.4 25.8 199 23-231 31-230 (234)
72 KOG1174 Anaphase-promoting com 99.5 1.6E-08 3.6E-13 85.6 40.0 270 130-408 228-500 (564)
73 PF12569 NARP1: NMDA receptor- 99.5 4.4E-10 9.5E-15 102.7 32.0 294 29-337 10-333 (517)
74 COG3063 PilF Tfp pilus assembl 99.5 1.6E-10 3.5E-15 89.8 24.1 199 25-233 37-236 (250)
75 PRK11189 lipoprotein NlpI; Pro 99.4 2.1E-10 4.5E-15 99.4 26.2 220 36-270 39-267 (296)
76 KOG1840 Kinesin light chain [C 99.4 1.2E-10 2.6E-15 105.0 22.9 244 23-266 199-477 (508)
77 KOG0548 Molecular co-chaperone 99.4 4E-09 8.6E-14 92.4 30.8 390 1-418 15-463 (539)
78 KOG1840 Kinesin light chain [C 99.4 2.4E-10 5.3E-15 103.1 23.6 243 134-406 199-477 (508)
79 KOG4318 Bicoid mRNA stability 99.4 2.4E-10 5.1E-15 105.5 22.4 251 80-358 12-285 (1088)
80 KOG4340 Uncharacterized conser 99.4 2.9E-09 6.4E-14 86.1 25.8 326 26-370 13-372 (459)
81 KOG4318 Bicoid mRNA stability 99.4 1.8E-09 3.8E-14 100.0 26.8 274 10-324 12-286 (1088)
82 PRK11189 lipoprotein NlpI; Pro 99.3 2.6E-09 5.5E-14 92.6 26.6 222 71-304 39-266 (296)
83 COG3063 PilF Tfp pilus assembl 99.3 3.8E-09 8.3E-14 82.3 23.5 196 243-442 39-235 (250)
84 KOG0548 Molecular co-chaperone 99.3 1E-07 2.2E-12 83.8 33.7 406 30-460 9-471 (539)
85 cd05804 StaR_like StaR_like; a 99.3 3.1E-08 6.8E-13 89.4 32.5 306 23-338 6-336 (355)
86 cd05804 StaR_like StaR_like; a 99.3 6.9E-08 1.5E-12 87.2 34.4 305 58-372 6-335 (355)
87 KOG2376 Signal recognition par 99.3 1.2E-07 2.7E-12 84.2 33.3 386 29-441 18-444 (652)
88 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.7E-16 74.5 6.3 49 377-425 1-49 (50)
89 KOG1127 TPR repeat-containing 99.3 3.2E-08 6.9E-13 93.1 30.5 183 4-197 474-658 (1238)
90 KOG0624 dsRNA-activated protei 99.3 1.3E-07 2.7E-12 78.5 30.1 302 57-372 37-369 (504)
91 KOG0624 dsRNA-activated protei 99.3 1.6E-07 3.5E-12 77.9 30.5 305 21-339 36-371 (504)
92 KOG3617 WD40 and TPR repeat-co 99.3 4E-07 8.7E-12 84.2 35.8 306 2-332 742-1168(1416)
93 PF13041 PPR_2: PPR repeat fam 99.2 4.9E-11 1.1E-15 71.9 6.5 50 21-70 1-50 (50)
94 PRK04841 transcriptional regul 99.2 6.1E-07 1.3E-11 91.8 39.9 339 106-444 381-761 (903)
95 KOG1125 TPR repeat-containing 99.2 2.9E-09 6.2E-14 94.1 19.0 224 2-232 299-526 (579)
96 KOG4340 Uncharacterized conser 99.2 7.2E-08 1.6E-12 78.3 25.0 327 60-405 12-372 (459)
97 PRK04841 transcriptional regul 99.2 4.5E-07 9.9E-12 92.8 37.6 375 26-409 344-761 (903)
98 PF04733 Coatomer_E: Coatomer 99.2 1.6E-09 3.5E-14 92.3 16.6 149 248-407 111-264 (290)
99 KOG1125 TPR repeat-containing 99.2 1.1E-08 2.5E-13 90.4 21.0 223 66-300 293-524 (579)
100 PF04733 Coatomer_E: Coatomer 99.1 7E-09 1.5E-13 88.4 17.9 256 178-451 10-271 (290)
101 KOG0985 Vesicle coat protein c 99.1 4.2E-06 9.1E-11 79.5 34.8 263 57-369 983-1245(1666)
102 KOG1914 mRNA cleavage and poly 99.1 8.1E-06 1.8E-10 72.3 37.8 87 13-110 11-97 (656)
103 KOG1070 rRNA processing protei 99.0 3.6E-07 7.8E-12 89.2 27.2 241 7-259 1443-1691(1710)
104 KOG1128 Uncharacterized conser 99.0 1.4E-07 3E-12 86.1 23.1 237 201-458 395-632 (777)
105 KOG3617 WD40 and TPR repeat-co 99.0 4E-07 8.6E-12 84.3 26.0 351 21-405 724-1171(1416)
106 PLN02789 farnesyltranstransfer 99.0 7.6E-07 1.7E-11 77.1 26.5 214 26-251 40-267 (320)
107 KOG1127 TPR repeat-containing 99.0 8.1E-07 1.8E-11 84.0 28.1 184 74-267 474-658 (1238)
108 PLN02789 farnesyltranstransfer 99.0 1.2E-06 2.6E-11 75.9 27.3 131 292-426 126-267 (320)
109 KOG0985 Vesicle coat protein c 99.0 1.4E-05 2.9E-10 76.2 35.1 319 8-371 967-1306(1666)
110 KOG3616 Selective LIM binding 99.0 2.2E-06 4.7E-11 78.7 28.6 188 215-436 743-930 (1636)
111 KOG1070 rRNA processing protei 99.0 5.9E-07 1.3E-11 87.8 26.0 226 168-400 1457-1692(1710)
112 KOG3616 Selective LIM binding 99.0 1.7E-06 3.7E-11 79.3 27.4 225 175-439 738-962 (1636)
113 KOG1128 Uncharacterized conser 99.0 2.7E-07 5.9E-12 84.2 21.9 234 170-424 399-633 (777)
114 COG5010 TadD Flp pilus assembl 99.0 2.2E-07 4.7E-12 74.4 18.5 164 57-231 66-229 (257)
115 PRK10370 formate-dependent nit 99.0 6E-08 1.3E-12 78.1 15.7 119 36-163 52-173 (198)
116 TIGR03302 OM_YfiO outer membra 98.9 2.6E-07 5.5E-12 77.9 19.7 189 21-233 31-232 (235)
117 KOG1914 mRNA cleavage and poly 98.9 3.8E-05 8.3E-10 68.2 40.7 174 290-465 347-526 (656)
118 PRK10370 formate-dependent nit 98.9 6.3E-07 1.4E-11 72.2 19.8 124 322-449 52-178 (198)
119 COG5010 TadD Flp pilus assembl 98.9 9E-07 1.9E-11 71.0 19.8 164 98-266 66-229 (257)
120 PRK15359 type III secretion sy 98.9 3.2E-07 6.9E-12 69.9 16.0 108 9-128 14-121 (144)
121 TIGR03302 OM_YfiO outer membra 98.8 1.6E-06 3.6E-11 73.0 20.2 189 56-268 31-232 (235)
122 PRK14720 transcript cleavage f 98.8 5E-06 1.1E-10 80.6 25.4 138 20-162 28-177 (906)
123 KOG2053 Mitochondrial inherita 98.8 0.00017 3.7E-09 68.2 42.1 220 2-234 23-256 (932)
124 KOG3081 Vesicle coat complex C 98.8 9.9E-06 2.1E-10 65.2 21.9 258 21-303 8-271 (299)
125 KOG2053 Mitochondrial inherita 98.8 0.00018 4E-09 68.0 43.2 462 1-479 56-612 (932)
126 PRK15359 type III secretion sy 98.8 6.4E-07 1.4E-11 68.2 15.0 91 350-442 30-120 (144)
127 PRK14720 transcript cleavage f 98.8 1.1E-05 2.4E-10 78.2 26.5 59 241-301 118-176 (906)
128 TIGR02552 LcrH_SycD type III s 98.8 5.3E-07 1.1E-11 68.5 14.6 111 9-128 4-114 (135)
129 KOG3060 Uncharacterized conser 98.8 1.1E-05 2.3E-10 64.5 21.6 189 216-408 24-220 (289)
130 KOG3081 Vesicle coat complex C 98.8 2.4E-05 5.2E-10 63.0 23.5 119 318-441 146-269 (299)
131 PRK15179 Vi polysaccharide bio 98.7 1E-05 2.2E-10 77.6 25.5 161 271-441 83-243 (694)
132 PRK15179 Vi polysaccharide bio 98.7 2.8E-06 6.1E-11 81.4 20.5 136 19-163 82-217 (694)
133 PF12854 PPR_1: PPR repeat 98.6 4.9E-08 1.1E-12 52.6 3.8 31 375-405 3-33 (34)
134 COG4783 Putative Zn-dependent 98.6 4.7E-06 1E-10 73.0 17.2 131 23-162 306-436 (484)
135 PF12854 PPR_1: PPR repeat 98.6 7.3E-08 1.6E-12 51.9 4.0 34 408-441 1-34 (34)
136 KOG3060 Uncharacterized conser 98.6 4.6E-05 9.9E-10 61.0 20.8 190 35-234 24-221 (289)
137 TIGR02552 LcrH_SycD type III s 98.6 3.1E-06 6.8E-11 64.2 14.5 110 45-163 5-114 (135)
138 COG4783 Putative Zn-dependent 98.6 4.6E-05 1E-09 67.0 22.3 154 277-452 309-462 (484)
139 PF09976 TPR_21: Tetratricopep 98.4 1.8E-05 3.8E-10 60.7 15.0 127 24-160 13-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.5E-05 3.3E-10 70.6 15.2 120 29-160 175-294 (395)
141 PF09976 TPR_21: Tetratricopep 98.4 2.7E-05 5.9E-10 59.6 14.6 116 322-440 24-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 7.8E-05 1.7E-09 66.2 18.0 122 139-266 174-295 (395)
143 PF10037 MRP-S27: Mitochondria 98.3 1.4E-05 3E-10 71.2 12.8 122 341-462 63-186 (429)
144 PF12895 Apc3: Anaphase-promot 98.3 1.3E-06 2.9E-11 59.6 5.2 82 1-84 2-84 (84)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.6E-05 1.6E-09 55.1 13.7 100 25-128 4-105 (119)
146 cd00189 TPR Tetratricopeptide 98.2 3E-05 6.6E-10 54.6 11.1 94 26-127 3-96 (100)
147 PF12895 Apc3: Anaphase-promot 98.2 4.7E-06 1E-10 56.9 6.2 81 36-124 2-83 (84)
148 PRK15363 pathogenicity island 98.2 4.8E-05 1E-09 57.0 11.5 97 24-128 36-132 (157)
149 KOG2041 WD40 repeat protein [G 98.2 0.0053 1.1E-07 57.0 26.0 203 55-298 689-902 (1189)
150 PRK15363 pathogenicity island 98.2 8.1E-05 1.8E-09 55.8 12.4 98 58-163 35-132 (157)
151 KOG0550 Molecular chaperone (D 98.2 0.002 4.3E-08 55.9 21.7 258 3-268 64-350 (486)
152 PRK02603 photosystem I assembl 98.2 0.00019 4.2E-09 56.8 15.3 93 23-122 35-129 (172)
153 PLN03088 SGT1, suppressor of 98.2 4.8E-05 1E-09 67.8 13.0 86 1-88 15-100 (356)
154 CHL00033 ycf3 photosystem I as 98.1 0.00012 2.6E-09 57.8 14.0 113 4-123 15-137 (168)
155 PF10037 MRP-S27: Mitochondria 98.1 5.8E-05 1.3E-09 67.3 13.2 123 270-392 62-186 (429)
156 PLN03088 SGT1, suppressor of 98.1 9.1E-05 2E-09 66.1 14.5 92 29-128 8-99 (356)
157 COG4235 Cytochrome c biogenesi 98.1 0.00025 5.4E-09 59.0 15.4 115 5-128 139-256 (287)
158 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00014 3.1E-09 53.6 12.9 100 60-163 4-105 (119)
159 TIGR00756 PPR pentatricopeptid 98.1 6.7E-06 1.5E-10 45.1 4.2 33 381-413 2-34 (35)
160 KOG0550 Molecular chaperone (D 98.1 0.0037 7.9E-08 54.3 22.0 267 25-303 51-350 (486)
161 PF05843 Suf: Suppressor of fo 98.1 0.00013 2.8E-09 62.7 13.9 131 24-163 2-136 (280)
162 PF07079 DUF1347: Protein of u 98.1 0.0066 1.4E-07 53.5 34.5 129 355-486 390-532 (549)
163 cd00189 TPR Tetratricopeptide 98.1 8.4E-05 1.8E-09 52.3 10.9 94 61-162 3-96 (100)
164 KOG0553 TPR repeat-containing 98.0 8.7E-05 1.9E-09 61.2 11.2 131 30-170 88-222 (304)
165 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 43.8 4.3 32 381-412 3-34 (34)
166 PRK10866 outer membrane biogen 98.0 0.00092 2E-08 55.9 17.5 186 22-231 31-239 (243)
167 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.6E-10 44.0 4.4 34 416-449 2-35 (35)
168 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 43.8 4.2 33 24-56 2-34 (34)
169 PRK10866 outer membrane biogen 98.0 0.0061 1.3E-07 51.1 22.7 56 140-195 181-238 (243)
170 COG4700 Uncharacterized protei 98.0 0.0019 4.2E-08 49.4 16.8 157 29-195 62-219 (251)
171 PF05843 Suf: Suppressor of fo 98.0 0.00013 2.8E-09 62.7 12.3 129 276-407 3-135 (280)
172 KOG2041 WD40 repeat protein [G 98.0 0.014 3E-07 54.4 28.1 176 20-227 689-875 (1189)
173 PF14938 SNAP: Soluble NSF att 98.0 0.00046 1E-08 59.6 15.2 138 23-162 35-183 (282)
174 PF12688 TPR_5: Tetratrico pep 98.0 0.00078 1.7E-08 48.8 13.8 109 28-144 6-116 (120)
175 PF12688 TPR_5: Tetratrico pep 97.9 0.00047 1E-08 49.9 12.1 98 1-110 14-117 (120)
176 PF14938 SNAP: Soluble NSF att 97.9 0.0067 1.4E-07 52.5 21.6 95 277-371 158-264 (282)
177 KOG0553 TPR repeat-containing 97.9 0.00019 4E-09 59.3 11.1 104 65-178 88-191 (304)
178 PRK10153 DNA-binding transcrip 97.9 0.0014 3.1E-08 61.3 17.7 143 305-452 333-489 (517)
179 PF08579 RPM2: Mitochondrial r 97.9 0.00034 7.3E-09 48.6 9.9 79 103-181 29-116 (120)
180 PF14559 TPR_19: Tetratricopep 97.9 5.6E-05 1.2E-09 49.1 6.1 51 1-52 4-54 (68)
181 PRK02603 photosystem I assembl 97.9 0.00094 2E-08 52.9 14.3 86 311-397 37-124 (172)
182 KOG2114 Vacuolar assembly/sort 97.9 0.025 5.5E-07 53.9 24.9 78 384-465 710-787 (933)
183 CHL00033 ycf3 photosystem I as 97.9 0.00054 1.2E-08 54.1 12.7 115 39-158 15-137 (168)
184 PF14559 TPR_19: Tetratricopep 97.8 8.8E-05 1.9E-09 48.1 6.7 55 33-88 1-55 (68)
185 PRK10153 DNA-binding transcrip 97.8 0.0024 5.1E-08 59.8 18.1 140 17-164 331-483 (517)
186 PF13414 TPR_11: TPR repeat; P 97.8 0.00011 2.4E-09 47.9 6.7 66 22-88 2-68 (69)
187 KOG1130 Predicted G-alpha GTPa 97.8 0.00056 1.2E-08 59.0 12.3 270 31-302 25-343 (639)
188 PF13432 TPR_16: Tetratricopep 97.8 0.00012 2.6E-09 47.0 6.6 59 29-88 3-61 (65)
189 PF13525 YfiO: Outer membrane 97.8 0.0058 1.3E-07 49.8 17.8 62 27-88 9-72 (203)
190 COG3898 Uncharacterized membra 97.8 0.021 4.5E-07 49.5 30.2 285 35-338 96-392 (531)
191 COG4235 Cytochrome c biogenesi 97.8 0.0019 4.1E-08 53.9 14.5 102 341-444 153-257 (287)
192 PF13525 YfiO: Outer membrane 97.8 0.0057 1.2E-07 49.9 17.5 177 58-258 5-197 (203)
193 KOG1130 Predicted G-alpha GTPa 97.8 0.00027 5.8E-09 60.9 9.8 265 1-267 30-343 (639)
194 COG3898 Uncharacterized membra 97.7 0.025 5.4E-07 49.0 30.4 283 146-443 96-392 (531)
195 PF01535 PPR: PPR repeat; Int 97.7 5.4E-05 1.2E-09 40.0 3.5 28 381-408 2-29 (31)
196 PF08579 RPM2: Mitochondrial r 97.7 0.0012 2.6E-08 46.0 10.5 73 389-461 35-116 (120)
197 PF13432 TPR_16: Tetratricopep 97.7 0.00026 5.6E-09 45.4 6.9 58 64-128 3-60 (65)
198 PF01535 PPR: PPR repeat; Int 97.6 7.1E-05 1.5E-09 39.5 3.2 31 415-445 1-31 (31)
199 PF07079 DUF1347: Protein of u 97.6 0.044 9.6E-07 48.6 41.5 434 2-454 20-530 (549)
200 PRK10803 tol-pal system protei 97.6 0.0022 4.8E-08 54.1 13.1 99 26-128 146-246 (263)
201 COG4700 Uncharacterized protei 97.6 0.02 4.2E-07 44.1 18.6 157 64-230 62-219 (251)
202 PF13414 TPR_11: TPR repeat; P 97.6 0.00041 8.9E-09 45.1 6.9 65 57-128 2-67 (69)
203 KOG1538 Uncharacterized conser 97.5 0.036 7.7E-07 51.4 20.4 38 119-159 620-657 (1081)
204 PF03704 BTAD: Bacterial trans 97.5 0.0068 1.5E-07 46.5 13.5 75 381-456 64-143 (146)
205 PRK10803 tol-pal system protei 97.5 0.0036 7.7E-08 52.9 12.6 86 355-442 154-245 (263)
206 PF06239 ECSIT: Evolutionarily 97.4 0.0021 4.6E-08 50.8 10.1 88 341-428 44-152 (228)
207 PRK15331 chaperone protein Sic 97.4 0.0027 5.8E-08 48.1 10.3 85 1-87 50-134 (165)
208 PF03704 BTAD: Bacterial trans 97.4 0.0039 8.4E-08 47.9 11.5 70 101-171 64-138 (146)
209 PF06239 ECSIT: Evolutionarily 97.4 0.0065 1.4E-07 48.2 12.3 105 96-219 44-153 (228)
210 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.085 1.8E-06 46.8 35.1 142 312-459 400-545 (660)
211 PF13371 TPR_9: Tetratricopept 97.4 0.0018 3.9E-08 42.6 7.9 58 30-88 2-59 (73)
212 KOG2796 Uncharacterized conser 97.4 0.06 1.3E-06 44.1 22.3 129 278-407 181-314 (366)
213 PRK15331 chaperone protein Sic 97.3 0.014 3E-07 44.4 12.9 91 64-162 43-133 (165)
214 PF13371 TPR_9: Tetratricopept 97.3 0.0028 6E-08 41.7 7.9 56 387-443 3-58 (73)
215 PF13424 TPR_12: Tetratricopep 97.2 0.00066 1.4E-08 45.4 4.8 69 59-127 6-74 (78)
216 KOG1538 Uncharacterized conser 97.2 0.094 2E-06 48.7 19.1 251 137-407 559-845 (1081)
217 KOG1258 mRNA processing protei 97.2 0.19 4.2E-06 46.5 34.9 187 239-428 297-489 (577)
218 KOG2280 Vacuolar assembly/sort 97.2 0.23 5.1E-06 47.1 27.5 343 49-437 423-793 (829)
219 KOG2796 Uncharacterized conser 97.1 0.11 2.4E-06 42.7 21.8 140 242-384 180-324 (366)
220 PF13424 TPR_12: Tetratricopep 97.1 0.0017 3.6E-08 43.4 5.8 64 23-86 5-74 (78)
221 PRK11906 transcriptional regul 97.1 0.06 1.3E-06 48.4 16.5 115 5-128 275-401 (458)
222 PF13281 DUF4071: Domain of un 97.1 0.18 3.8E-06 44.7 20.3 102 58-162 141-254 (374)
223 KOG2280 Vacuolar assembly/sort 97.0 0.32 7E-06 46.3 30.1 341 95-471 428-792 (829)
224 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.22 4.9E-06 44.3 31.3 144 276-424 399-545 (660)
225 PF13281 DUF4071: Domain of un 97.0 0.22 4.7E-06 44.2 20.3 29 416-444 307-335 (374)
226 KOG1585 Protein required for f 96.9 0.17 3.8E-06 41.1 17.2 87 23-125 31-117 (308)
227 PF10300 DUF3808: Protein of u 96.9 0.065 1.4E-06 50.0 15.6 133 64-198 194-334 (468)
228 COG1729 Uncharacterized protei 96.8 0.029 6.2E-07 46.5 11.4 99 25-128 144-244 (262)
229 COG3118 Thioredoxin domain-con 96.8 0.13 2.8E-06 43.2 14.8 150 29-188 140-291 (304)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.034 7.4E-07 49.8 12.2 65 21-87 73-141 (453)
231 KOG1585 Protein required for f 96.7 0.24 5.3E-06 40.2 16.6 85 136-230 33-117 (308)
232 COG3118 Thioredoxin domain-con 96.7 0.3 6.5E-06 41.1 17.6 144 66-218 142-286 (304)
233 KOG0543 FKBP-type peptidyl-pro 96.7 0.03 6.4E-07 49.0 11.1 117 2-126 222-353 (397)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.093 2E-06 47.2 14.0 65 57-128 74-141 (453)
235 PF12921 ATP13: Mitochondrial 96.6 0.072 1.6E-06 39.2 11.1 53 95-147 48-101 (126)
236 KOG0543 FKBP-type peptidyl-pro 96.6 0.057 1.2E-06 47.3 11.9 93 29-128 214-320 (397)
237 KOG1258 mRNA processing protei 96.5 0.69 1.5E-05 43.1 35.0 413 23-463 45-489 (577)
238 KOG2114 Vacuolar assembly/sort 96.5 0.88 1.9E-05 44.1 20.5 148 24-195 369-516 (933)
239 COG1729 Uncharacterized protei 96.5 0.065 1.4E-06 44.4 11.4 88 1-88 154-245 (262)
240 PF04840 Vps16_C: Vps16, C-ter 96.5 0.53 1.2E-05 41.3 30.1 104 278-401 181-284 (319)
241 PF12921 ATP13: Mitochondrial 96.5 0.08 1.7E-06 38.9 10.6 51 374-424 47-98 (126)
242 KOG2610 Uncharacterized conser 96.4 0.13 2.8E-06 43.8 12.8 157 33-195 113-273 (491)
243 PF04840 Vps16_C: Vps16, C-ter 96.4 0.57 1.2E-05 41.1 30.2 109 311-439 179-287 (319)
244 PF13428 TPR_14: Tetratricopep 96.4 0.011 2.5E-07 34.0 5.0 41 24-65 2-42 (44)
245 COG4105 ComL DNA uptake lipopr 96.4 0.43 9.3E-06 39.4 20.7 55 175-230 173-230 (254)
246 PF13512 TPR_18: Tetratricopep 96.4 0.26 5.7E-06 36.7 13.0 67 23-89 10-78 (142)
247 KOG4555 TPR repeat-containing 96.4 0.057 1.2E-06 38.9 8.9 88 1-89 56-146 (175)
248 PF04053 Coatomer_WDAD: Coatom 96.4 0.11 2.4E-06 47.8 13.4 161 30-230 268-428 (443)
249 PF10300 DUF3808: Protein of u 96.4 0.37 8.1E-06 45.1 17.1 162 27-196 192-374 (468)
250 PF08631 SPO22: Meiosis protei 96.3 0.6 1.3E-05 40.4 25.0 120 2-128 7-150 (278)
251 PF08631 SPO22: Meiosis protei 96.3 0.62 1.3E-05 40.3 23.9 168 33-204 3-192 (278)
252 COG0457 NrfG FOG: TPR repeat [ 96.3 0.54 1.2E-05 39.4 25.3 225 36-268 36-265 (291)
253 PRK11906 transcriptional regul 96.3 0.11 2.5E-06 46.7 12.3 115 3-125 319-433 (458)
254 COG4105 ComL DNA uptake lipopr 96.2 0.59 1.3E-05 38.7 20.8 72 109-180 44-117 (254)
255 PF04053 Coatomer_WDAD: Coatom 96.2 0.16 3.4E-06 46.8 13.2 158 66-265 269-428 (443)
256 PF13428 TPR_14: Tetratricopep 96.1 0.021 4.5E-07 32.9 5.0 42 59-107 2-43 (44)
257 COG4649 Uncharacterized protei 96.1 0.43 9.4E-06 36.6 14.0 123 34-162 69-195 (221)
258 KOG4555 TPR repeat-containing 96.1 0.15 3.2E-06 36.8 9.9 91 67-164 52-145 (175)
259 COG4785 NlpI Lipoprotein NlpI, 96.1 0.56 1.2E-05 37.5 14.7 30 204-233 237-266 (297)
260 KOG1941 Acetylcholine receptor 96.1 0.37 8.1E-06 41.7 13.7 229 33-267 16-274 (518)
261 PF13512 TPR_18: Tetratricopep 96.0 0.13 2.7E-06 38.3 9.7 69 1-69 23-93 (142)
262 KOG2610 Uncharacterized conser 95.8 0.42 9.1E-06 40.9 13.0 151 216-369 115-272 (491)
263 KOG3941 Intermediate in Toll s 95.8 0.12 2.6E-06 42.9 9.6 33 431-463 140-172 (406)
264 smart00299 CLH Clathrin heavy 95.8 0.57 1.2E-05 35.5 15.2 84 314-405 12-95 (140)
265 COG3629 DnrI DNA-binding trans 95.8 0.16 3.6E-06 42.9 10.6 79 381-460 155-238 (280)
266 COG4649 Uncharacterized protei 95.6 0.73 1.6E-05 35.4 13.7 121 2-128 72-196 (221)
267 KOG2396 HAT (Half-A-TPR) repea 95.4 2 4.4E-05 39.2 39.8 412 6-442 89-558 (568)
268 KOG1941 Acetylcholine receptor 95.4 0.61 1.3E-05 40.5 12.4 231 68-302 16-274 (518)
269 COG0457 NrfG FOG: TPR repeat [ 95.2 1.6 3.5E-05 36.4 28.8 223 71-303 36-265 (291)
270 PF09205 DUF1955: Domain of un 95.2 0.86 1.9E-05 33.2 14.4 137 110-271 13-152 (161)
271 PF13431 TPR_17: Tetratricopep 95.1 0.036 7.8E-07 29.6 3.2 32 11-43 2-33 (34)
272 smart00299 CLH Clathrin heavy 95.1 1.1 2.3E-05 34.0 15.6 84 63-160 12-95 (140)
273 COG3629 DnrI DNA-binding trans 95.1 0.35 7.6E-06 41.0 10.3 79 99-178 153-236 (280)
274 PF13176 TPR_7: Tetratricopept 95.0 0.062 1.3E-06 29.2 4.0 26 25-50 1-26 (36)
275 KOG1550 Extracellular protein 94.9 3.9 8.4E-05 39.5 27.6 179 4-200 228-428 (552)
276 PF10345 Cohesin_load: Cohesin 94.8 4.6 9.9E-05 39.7 41.3 188 6-196 39-252 (608)
277 KOG3941 Intermediate in Toll s 94.7 0.31 6.6E-06 40.6 8.7 105 96-219 64-173 (406)
278 PF04184 ST7: ST7 protein; In 94.7 3.5 7.6E-05 37.9 17.1 60 138-197 263-323 (539)
279 PF13170 DUF4003: Protein of u 94.5 3 6.6E-05 36.2 19.9 133 115-249 78-227 (297)
280 PF09205 DUF1955: Domain of un 94.3 1.5 3.2E-05 32.1 14.5 67 379-446 86-152 (161)
281 PF13431 TPR_17: Tetratricopep 94.2 0.058 1.3E-06 28.8 2.5 32 81-119 2-33 (34)
282 PF10602 RPN7: 26S proteasome 94.2 1.7 3.8E-05 34.4 11.8 93 277-371 39-140 (177)
283 PF09613 HrpB1_HrpK: Bacterial 94.0 2.1 4.6E-05 32.7 12.9 51 321-372 22-72 (160)
284 PF13176 TPR_7: Tetratricopept 93.8 0.16 3.6E-06 27.5 3.9 22 418-439 3-24 (36)
285 PF10602 RPN7: 26S proteasome 93.7 1.2 2.6E-05 35.3 10.1 64 99-162 36-101 (177)
286 PF04184 ST7: ST7 protein; In 93.7 5.7 0.00012 36.6 19.4 164 63-246 173-338 (539)
287 PF00515 TPR_1: Tetratricopept 93.5 0.26 5.6E-06 26.2 4.4 29 24-52 2-30 (34)
288 PF07719 TPR_2: Tetratricopept 93.5 0.26 5.6E-06 26.1 4.4 29 24-52 2-30 (34)
289 PF09613 HrpB1_HrpK: Bacterial 93.4 2.7 5.9E-05 32.2 13.6 58 29-88 16-74 (160)
290 COG2976 Uncharacterized protei 93.2 2.1 4.5E-05 33.9 10.1 134 23-164 54-189 (207)
291 KOG1920 IkappaB kinase complex 93.2 12 0.00025 38.6 24.1 82 208-301 943-1026(1265)
292 COG4785 NlpI Lipoprotein NlpI, 93.2 3.8 8.3E-05 33.0 14.3 187 70-270 77-268 (297)
293 PF00515 TPR_1: Tetratricopept 93.1 0.25 5.4E-06 26.2 4.0 26 382-407 4-29 (34)
294 PF10345 Cohesin_load: Cohesin 93.1 9.5 0.00021 37.5 37.5 199 22-231 29-252 (608)
295 PF06552 TOM20_plant: Plant sp 93.0 2.5 5.4E-05 33.0 10.3 95 4-109 7-123 (186)
296 KOG4570 Uncharacterized conser 93.0 1.3 2.9E-05 37.6 9.5 103 304-408 59-164 (418)
297 PF11207 DUF2989: Protein of u 92.7 1.3 2.7E-05 35.4 8.6 74 4-78 122-198 (203)
298 KOG4234 TPR repeat-containing 92.7 2.5 5.5E-05 33.5 10.1 87 1-88 108-198 (271)
299 PF07719 TPR_2: Tetratricopept 92.7 0.31 6.7E-06 25.8 4.0 26 382-407 4-29 (34)
300 KOG1550 Extracellular protein 92.6 10 0.00022 36.7 26.6 178 115-304 228-427 (552)
301 PF08424 NRDE-2: NRDE-2, neces 92.6 7.2 0.00016 34.6 17.0 108 10-126 7-129 (321)
302 PRK15180 Vi polysaccharide bio 92.5 7.8 0.00017 35.4 14.0 125 106-234 296-421 (831)
303 COG2909 MalT ATP-dependent tra 92.0 14 0.00031 36.8 28.0 223 109-334 425-684 (894)
304 PF06552 TOM20_plant: Plant sp 91.9 1.9 4.1E-05 33.6 8.5 110 39-164 7-137 (186)
305 PF07035 Mic1: Colon cancer-as 91.8 5 0.00011 31.2 15.1 32 48-79 19-50 (167)
306 PF07035 Mic1: Colon cancer-as 91.8 5.1 0.00011 31.2 15.0 122 95-230 25-146 (167)
307 COG2976 Uncharacterized protei 91.5 5.9 0.00013 31.5 13.8 125 61-199 57-189 (207)
308 PF02284 COX5A: Cytochrome c o 91.5 3.4 7.3E-05 28.7 9.3 60 397-457 28-87 (108)
309 KOG4234 TPR repeat-containing 91.4 3.4 7.5E-05 32.8 9.4 93 68-163 105-197 (271)
310 KOG0276 Vesicle coat complex C 91.4 4.6 0.0001 38.0 11.7 150 34-230 597-747 (794)
311 KOG2471 TPR repeat-containing 91.3 11 0.00024 34.7 13.5 39 112-150 30-68 (696)
312 PF13170 DUF4003: Protein of u 91.3 9.4 0.0002 33.3 19.8 129 257-387 80-225 (297)
313 PF13374 TPR_10: Tetratricopep 91.3 0.59 1.3E-05 26.1 4.2 28 24-51 3-30 (42)
314 KOG4570 Uncharacterized conser 91.0 4.2 9.1E-05 34.9 10.2 128 245-374 25-165 (418)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 2.1 4.6E-05 29.2 6.9 63 38-107 22-84 (103)
316 KOG2471 TPR repeat-containing 90.8 13 0.00029 34.2 14.5 108 318-427 249-382 (696)
317 PF13374 TPR_10: Tetratricopep 90.4 0.77 1.7E-05 25.6 4.2 26 381-406 4-29 (42)
318 TIGR03504 FimV_Cterm FimV C-te 90.3 0.61 1.3E-05 26.6 3.5 23 420-442 5-27 (44)
319 PRK09687 putative lyase; Provi 90.1 12 0.00026 32.4 27.1 138 308-461 141-279 (280)
320 PF13174 TPR_6: Tetratricopept 90.0 0.7 1.5E-05 24.1 3.6 27 26-52 3-29 (33)
321 PF11207 DUF2989: Protein of u 89.9 6.9 0.00015 31.4 10.1 74 41-118 124-197 (203)
322 KOG0276 Vesicle coat complex C 89.1 11 0.00024 35.7 12.1 45 321-371 649-693 (794)
323 PF13929 mRNA_stabil: mRNA sta 89.0 14 0.00029 31.7 14.9 87 376-462 199-291 (292)
324 PF13181 TPR_8: Tetratricopept 89.0 1.3 2.9E-05 23.3 4.2 28 25-52 3-30 (34)
325 PF02259 FAT: FAT domain; Int 88.6 18 0.00039 32.6 22.9 65 308-372 145-212 (352)
326 COG4455 ImpE Protein of avirul 88.4 5.2 0.00011 32.4 8.4 79 26-109 4-82 (273)
327 KOG1920 IkappaB kinase complex 88.3 35 0.00076 35.5 27.6 109 279-407 913-1027(1265)
328 PF07163 Pex26: Pex26 protein; 88.1 9.2 0.0002 32.4 10.0 89 28-122 88-181 (309)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 88.0 6.8 0.00015 26.9 10.0 63 394-457 22-84 (103)
330 TIGR02561 HrpB1_HrpK type III 87.6 10 0.00023 28.6 12.3 56 31-88 18-74 (153)
331 PF07721 TPR_4: Tetratricopept 87.5 1 2.2E-05 22.1 2.8 21 27-47 5-25 (26)
332 KOG1586 Protein required for f 87.4 15 0.00032 30.3 18.1 62 105-166 119-186 (288)
333 COG4455 ImpE Protein of avirul 87.4 5.1 0.00011 32.4 7.8 75 62-143 5-81 (273)
334 KOG2066 Vacuolar assembly/sort 87.3 32 0.00069 33.9 27.1 102 30-146 363-467 (846)
335 KOG0890 Protein kinase of the 87.3 58 0.0013 36.9 25.3 60 310-372 1671-1730(2382)
336 PF13181 TPR_8: Tetratricopept 87.1 2 4.4E-05 22.5 4.2 26 382-407 4-29 (34)
337 COG3947 Response regulator con 87.0 18 0.0004 30.9 16.8 71 382-453 282-357 (361)
338 KOG0128 RNA-binding protein SA 86.7 36 0.00077 33.9 35.1 372 21-413 111-531 (881)
339 KOG4077 Cytochrome c oxidase, 86.3 8.3 0.00018 28.0 7.6 59 398-457 68-126 (149)
340 TIGR02561 HrpB1_HrpK type III 86.2 13 0.00027 28.2 11.9 52 321-373 22-73 (153)
341 PF02284 COX5A: Cytochrome c o 86.1 9.3 0.0002 26.6 9.0 75 26-107 11-87 (108)
342 KOG4648 Uncharacterized conser 86.0 6.3 0.00014 34.3 8.2 54 31-85 105-158 (536)
343 KOG4648 Uncharacterized conser 85.7 5.8 0.00012 34.5 7.9 94 316-413 104-197 (536)
344 KOG0128 RNA-binding protein SA 85.4 41 0.0009 33.5 31.2 370 57-448 112-531 (881)
345 TIGR03504 FimV_Cterm FimV C-te 85.3 2.5 5.3E-05 24.2 3.9 26 28-53 4-29 (44)
346 PF00637 Clathrin: Region in C 85.2 0.37 8E-06 36.7 0.8 83 315-404 13-95 (143)
347 PRK11619 lytic murein transgly 85.1 42 0.00092 33.3 36.7 376 32-438 42-463 (644)
348 PF02259 FAT: FAT domain; Int 84.6 30 0.00065 31.2 22.0 66 237-302 144-212 (352)
349 PF13174 TPR_6: Tetratricopept 84.3 2 4.3E-05 22.3 3.2 23 385-407 6-28 (33)
350 KOG4507 Uncharacterized conser 83.9 9 0.0002 36.1 8.8 101 2-110 621-721 (886)
351 PF00637 Clathrin: Region in C 83.1 0.76 1.7E-05 35.0 1.7 83 105-194 13-95 (143)
352 KOG0890 Protein kinase of the 82.8 94 0.002 35.5 25.4 318 63-408 1388-1731(2382)
353 PRK15180 Vi polysaccharide bio 82.6 41 0.00088 31.1 29.9 127 30-165 296-422 (831)
354 PF14853 Fis1_TPR_C: Fis1 C-te 82.1 8.7 0.00019 23.1 6.1 34 420-455 7-40 (53)
355 PF07163 Pex26: Pex26 protein; 82.0 29 0.00064 29.5 10.2 87 246-332 90-181 (309)
356 PF07575 Nucleopor_Nup85: Nup8 81.6 55 0.0012 32.0 21.0 26 23-49 149-174 (566)
357 PF10579 Rapsyn_N: Rapsyn N-te 81.1 6.5 0.00014 25.8 5.0 47 391-437 18-66 (80)
358 PRK11619 lytic murein transgly 81.0 62 0.0013 32.2 38.8 76 63-150 104-179 (644)
359 smart00028 TPR Tetratricopepti 80.0 4.1 9E-05 20.3 3.7 28 25-52 3-30 (34)
360 COG2909 MalT ATP-dependent tra 79.7 73 0.0016 32.2 30.7 228 143-370 424-685 (894)
361 PF10579 Rapsyn_N: Rapsyn N-te 79.5 7.5 0.00016 25.6 4.9 51 30-81 14-66 (80)
362 COG1747 Uncharacterized N-term 79.0 57 0.0012 30.6 24.8 179 168-354 65-249 (711)
363 KOG2066 Vacuolar assembly/sort 78.9 72 0.0016 31.7 28.7 105 65-181 363-467 (846)
364 PF13929 mRNA_stabil: mRNA sta 78.5 43 0.00092 28.8 15.9 116 114-229 143-263 (292)
365 PF04097 Nic96: Nup93/Nic96; 78.1 75 0.0016 31.4 26.3 89 175-268 264-356 (613)
366 COG5159 RPN6 26S proteasome re 77.6 44 0.00096 28.6 11.5 24 243-266 129-152 (421)
367 COG3947 Response regulator con 77.6 45 0.00098 28.7 16.5 72 346-418 281-357 (361)
368 KOG4507 Uncharacterized conser 77.2 13 0.00029 35.0 7.6 110 346-457 609-718 (886)
369 PRK10941 hypothetical protein; 77.0 47 0.001 28.5 10.7 78 26-109 184-261 (269)
370 KOG4642 Chaperone-dependent E3 76.4 43 0.00094 27.9 11.0 84 33-125 20-104 (284)
371 KOG1464 COP9 signalosome, subu 76.4 46 0.001 28.1 17.1 208 164-371 21-259 (440)
372 KOG3364 Membrane protein invol 75.6 31 0.00067 25.7 9.4 67 341-408 29-100 (149)
373 PF13934 ELYS: Nuclear pore co 75.5 31 0.00067 28.7 8.9 103 2-121 92-198 (226)
374 smart00386 HAT HAT (Half-A-TPR 75.0 6.9 0.00015 19.9 3.5 29 2-31 1-29 (33)
375 PF08424 NRDE-2: NRDE-2, neces 74.8 62 0.0013 28.8 16.5 99 55-161 16-129 (321)
376 KOG1308 Hsp70-interacting prot 74.7 2.4 5.3E-05 36.7 2.3 96 69-172 125-220 (377)
377 PF07575 Nucleopor_Nup85: Nup8 74.6 90 0.0019 30.6 19.8 74 296-371 392-465 (566)
378 PRK09687 putative lyase; Provi 74.6 57 0.0012 28.3 28.2 217 97-336 35-261 (280)
379 PF14561 TPR_20: Tetratricopep 74.0 25 0.00055 24.0 8.6 65 8-73 8-73 (90)
380 KOG1586 Protein required for f 73.7 51 0.0011 27.4 19.9 24 211-234 161-184 (288)
381 KOG1308 Hsp70-interacting prot 73.4 2.1 4.5E-05 37.1 1.6 84 2-88 128-212 (377)
382 TIGR02508 type_III_yscG type I 73.3 28 0.00062 24.2 8.2 79 38-129 20-98 (115)
383 KOG4077 Cytochrome c oxidase, 73.0 34 0.00074 25.0 7.3 48 41-88 67-114 (149)
384 KOG0686 COP9 signalosome, subu 72.4 77 0.0017 28.8 14.0 63 100-162 151-215 (466)
385 PF09670 Cas_Cas02710: CRISPR- 71.8 76 0.0016 29.1 11.2 57 30-87 138-198 (379)
386 PF12862 Apc5: Anaphase-promot 71.2 31 0.00067 23.8 6.9 53 390-442 9-69 (94)
387 PF11848 DUF3368: Domain of un 71.0 18 0.0004 21.1 5.1 33 425-457 13-45 (48)
388 KOG4642 Chaperone-dependent E3 70.8 61 0.0013 27.0 11.0 81 71-160 23-104 (284)
389 TIGR02508 type_III_yscG type I 70.7 33 0.00072 23.9 7.7 79 3-88 20-98 (115)
390 COG0735 Fur Fe2+/Zn2+ uptake r 70.5 38 0.00082 25.8 7.7 65 400-465 7-71 (145)
391 KOG1464 COP9 signalosome, subu 69.6 69 0.0015 27.2 23.9 271 129-406 21-330 (440)
392 COG0790 FOG: TPR repeat, SEL1 69.6 77 0.0017 27.7 24.0 22 254-275 252-273 (292)
393 PF14689 SPOB_a: Sensor_kinase 69.3 17 0.00036 22.8 4.6 46 39-86 6-51 (62)
394 PF04910 Tcf25: Transcriptiona 69.1 91 0.002 28.3 21.8 108 55-162 37-167 (360)
395 cd00280 TRFH Telomeric Repeat 69.0 35 0.00075 27.0 7.0 20 67-86 120-139 (200)
396 KOG2396 HAT (Half-A-TPR) repea 68.9 1E+02 0.0022 28.9 37.7 87 376-465 456-546 (568)
397 PF04097 Nic96: Nup93/Nic96; 68.4 1.3E+02 0.0028 29.9 21.1 217 245-471 264-527 (613)
398 PF11846 DUF3366: Domain of un 68.2 32 0.0007 27.7 7.4 33 410-442 140-172 (193)
399 PF14689 SPOB_a: Sensor_kinase 67.4 27 0.00058 21.8 5.3 28 100-127 24-51 (62)
400 KOG3807 Predicted membrane pro 67.3 88 0.0019 27.5 9.8 109 35-164 228-341 (556)
401 COG0790 FOG: TPR repeat, SEL1 66.5 89 0.0019 27.3 24.3 150 70-234 53-221 (292)
402 KOG0376 Serine-threonine phosp 66.4 13 0.00029 34.0 5.1 100 318-422 13-113 (476)
403 PF11817 Foie-gras_1: Foie gra 66.1 38 0.00083 28.7 7.7 62 99-160 178-244 (247)
404 COG0735 Fur Fe2+/Zn2+ uptake r 66.1 46 0.001 25.4 7.4 63 10-73 8-70 (145)
405 PF14853 Fis1_TPR_C: Fis1 C-te 65.7 27 0.00059 21.0 5.8 31 27-59 5-35 (53)
406 KOG0686 COP9 signalosome, subu 65.4 1.1E+02 0.0024 27.9 13.1 97 25-122 152-253 (466)
407 PF09477 Type_III_YscG: Bacter 65.0 47 0.001 23.6 10.9 82 35-129 18-99 (116)
408 PRK10564 maltose regulon perip 64.8 18 0.00038 31.2 5.3 29 383-411 261-289 (303)
409 PF04190 DUF410: Protein of un 64.6 91 0.002 26.7 17.4 26 343-368 89-114 (260)
410 PRK12798 chemotaxis protein; R 64.3 1.2E+02 0.0026 27.9 17.9 212 1-216 125-342 (421)
411 KOG2422 Uncharacterized conser 63.2 1.5E+02 0.0032 28.6 18.5 163 35-197 250-447 (665)
412 KOG2063 Vacuolar assembly/sort 63.1 1.9E+02 0.0041 29.9 18.3 26 61-86 507-532 (877)
413 COG1747 Uncharacterized N-term 62.8 1.4E+02 0.003 28.3 25.3 165 97-268 64-234 (711)
414 KOG0376 Serine-threonine phosp 62.7 22 0.00048 32.8 5.8 104 30-144 11-115 (476)
415 PF12862 Apc5: Anaphase-promot 62.4 49 0.0011 22.8 6.8 55 33-87 8-70 (94)
416 cd00280 TRFH Telomeric Repeat 62.1 77 0.0017 25.2 7.7 19 32-50 120-138 (200)
417 COG5159 RPN6 26S proteasome re 61.7 1.1E+02 0.0023 26.5 20.9 129 29-159 9-150 (421)
418 PF11848 DUF3368: Domain of un 61.7 30 0.00066 20.2 4.9 33 110-142 13-45 (48)
419 PF14561 TPR_20: Tetratricopep 61.6 50 0.0011 22.6 9.2 64 46-115 11-74 (90)
420 KOG4814 Uncharacterized conser 61.4 88 0.0019 30.4 9.3 94 25-127 357-456 (872)
421 PF09986 DUF2225: Uncharacteri 61.3 93 0.002 25.7 11.2 64 381-444 120-195 (214)
422 KOG4814 Uncharacterized conser 60.3 66 0.0014 31.1 8.4 83 3-87 369-457 (872)
423 KOG4567 GTPase-activating prot 60.3 1.2E+02 0.0025 26.6 9.1 57 364-425 263-319 (370)
424 PRK10564 maltose regulon perip 60.3 25 0.00053 30.4 5.3 40 415-454 258-297 (303)
425 PRK10941 hypothetical protein; 60.0 1.1E+02 0.0025 26.3 11.0 78 383-461 185-263 (269)
426 PF09986 DUF2225: Uncharacteri 59.6 1E+02 0.0022 25.5 11.5 95 33-128 87-194 (214)
427 PF11846 DUF3366: Domain of un 59.6 30 0.00065 27.9 5.8 52 35-88 120-174 (193)
428 KOG1839 Uncharacterized protei 59.4 1.5E+02 0.0033 31.6 11.4 133 30-162 939-1085(1236)
429 PF04910 Tcf25: Transcriptiona 59.2 1.4E+02 0.0031 27.1 19.7 126 96-231 37-166 (360)
430 cd08819 CARD_MDA5_2 Caspase ac 58.9 54 0.0012 22.2 6.9 67 41-119 20-86 (88)
431 KOG3364 Membrane protein invol 58.3 77 0.0017 23.8 8.6 68 20-88 29-101 (149)
432 PHA02875 ankyrin repeat protei 57.6 1.6E+02 0.0035 27.3 13.3 69 10-82 17-89 (413)
433 PF03745 DUF309: Domain of unk 57.6 35 0.00076 21.4 4.4 50 32-81 8-62 (62)
434 PF02184 HAT: HAT (Half-A-TPR) 57.5 27 0.00059 18.3 3.3 22 395-418 3-24 (32)
435 KOG2063 Vacuolar assembly/sort 57.5 2.4E+02 0.0052 29.2 20.3 122 25-146 506-638 (877)
436 PF11663 Toxin_YhaV: Toxin wit 56.5 15 0.00032 27.2 3.0 29 392-422 108-136 (140)
437 PF11663 Toxin_YhaV: Toxin wit 56.5 15 0.00032 27.2 3.0 31 35-67 107-137 (140)
438 PF00244 14-3-3: 14-3-3 protei 54.4 1.3E+02 0.0029 25.3 10.8 59 28-86 6-65 (236)
439 PRK09462 fur ferric uptake reg 53.7 99 0.0021 23.6 7.6 60 405-465 8-68 (148)
440 PF09454 Vps23_core: Vps23 cor 53.4 56 0.0012 20.7 4.9 49 21-70 6-54 (65)
441 PRK13342 recombination factor 53.2 1.9E+02 0.0042 26.9 18.4 23 148-170 244-266 (413)
442 PRK13342 recombination factor 53.1 2E+02 0.0042 26.9 16.6 140 115-273 153-304 (413)
443 COG5108 RPO41 Mitochondrial DN 52.9 1.4E+02 0.0031 29.3 9.2 43 423-465 546-588 (1117)
444 PRK11639 zinc uptake transcrip 52.4 1.1E+02 0.0025 24.0 7.9 59 406-465 18-76 (169)
445 KOG1839 Uncharacterized protei 52.3 1.7E+02 0.0037 31.3 10.4 152 7-158 957-1123(1236)
446 PF10255 Paf67: RNA polymerase 52.3 42 0.00091 30.7 5.8 58 313-370 126-190 (404)
447 KOG2908 26S proteasome regulat 51.8 1.7E+02 0.0038 26.0 9.6 57 351-407 82-143 (380)
448 PF11817 Foie-gras_1: Foie gra 51.6 1.1E+02 0.0023 26.1 8.0 79 116-196 162-245 (247)
449 PF10366 Vps39_1: Vacuolar sor 50.6 39 0.00085 24.1 4.4 26 382-407 42-67 (108)
450 PF04190 DUF410: Protein of un 50.5 1.6E+02 0.0035 25.2 16.9 91 31-122 18-113 (260)
451 PF09477 Type_III_YscG: Bacter 50.5 90 0.0019 22.2 9.4 79 3-88 21-99 (116)
452 PF15297 CKAP2_C: Cytoskeleton 50.1 1E+02 0.0022 27.5 7.4 43 25-67 142-184 (353)
453 PF09670 Cas_Cas02710: CRISPR- 49.7 2.1E+02 0.0046 26.3 12.5 56 247-303 139-198 (379)
454 PF12968 DUF3856: Domain of Un 48.2 90 0.002 22.8 5.6 84 2-85 23-127 (144)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 47.6 1.1E+02 0.0025 22.6 9.3 77 360-441 49-126 (126)
456 PF04762 IKI3: IKI3 family; I 46.8 3E+02 0.0065 29.1 11.5 114 133-264 811-926 (928)
457 cd07153 Fur_like Ferric uptake 46.7 64 0.0014 23.3 5.2 38 428-465 14-51 (116)
458 KOG4521 Nuclear pore complex, 46.4 4E+02 0.0087 28.5 14.2 91 29-122 926-1044(1480)
459 KOG2168 Cullins [Cell cycle co 46.3 3.4E+02 0.0074 27.7 21.7 19 178-196 477-495 (835)
460 PF04090 RNA_pol_I_TF: RNA pol 46.0 1.5E+02 0.0033 24.1 7.4 62 23-85 41-103 (199)
461 PF01475 FUR: Ferric uptake re 45.7 63 0.0014 23.5 5.1 47 419-465 12-58 (120)
462 KOG2300 Uncharacterized conser 45.6 2.7E+02 0.0058 26.3 37.0 411 29-441 13-512 (629)
463 KOG0551 Hsp90 co-chaperone CNS 45.6 2E+02 0.0043 25.6 8.3 97 23-126 81-180 (390)
464 COG5108 RPO41 Mitochondrial DN 45.4 1.8E+02 0.0039 28.6 8.7 73 104-179 33-113 (1117)
465 PRK09462 fur ferric uptake reg 44.6 1.4E+02 0.0031 22.8 7.6 36 149-184 32-67 (148)
466 KOG0545 Aryl-hydrocarbon recep 44.3 2E+02 0.0043 24.4 9.6 110 309-420 178-305 (329)
467 PF02607 B12-binding_2: B12 bi 44.2 56 0.0012 21.4 4.3 38 427-464 14-51 (79)
468 PF15297 CKAP2_C: Cytoskeleton 44.1 2.4E+02 0.0052 25.3 10.2 63 396-460 120-186 (353)
469 PF10475 DUF2450: Protein of u 43.9 2.2E+02 0.0049 24.9 9.1 114 105-229 104-222 (291)
470 COG5191 Uncharacterized conser 42.8 98 0.0021 27.0 6.1 79 19-105 103-182 (435)
471 PRK11639 zinc uptake transcrip 42.5 1.7E+02 0.0036 23.1 7.7 59 126-185 18-76 (169)
472 KOG2034 Vacuolar sorting prote 41.8 4.1E+02 0.0089 27.4 28.7 303 63-407 363-695 (911)
473 PF13762 MNE1: Mitochondrial s 41.5 1.6E+02 0.0034 22.5 10.8 81 137-217 42-128 (145)
474 cd08819 CARD_MDA5_2 Caspase ac 41.4 1.1E+02 0.0025 20.8 7.1 36 216-256 48-83 (88)
475 PF07720 TPR_3: Tetratricopept 41.2 60 0.0013 17.6 3.7 21 26-46 4-24 (36)
476 KOG0991 Replication factor C, 41.2 2.2E+02 0.0047 24.0 12.5 137 310-455 131-279 (333)
477 PF09454 Vps23_core: Vps23 cor 41.1 71 0.0015 20.3 4.0 51 55-112 5-55 (65)
478 PF02847 MA3: MA3 domain; Int 40.9 68 0.0015 23.0 4.6 61 348-410 6-68 (113)
479 KOG2297 Predicted translation 40.7 2.5E+02 0.0055 24.6 15.9 19 27-45 33-52 (412)
480 cd07153 Fur_like Ferric uptake 40.6 80 0.0017 22.7 5.0 48 28-75 5-52 (116)
481 KOG0292 Vesicle coat complex C 40.5 4.1E+02 0.009 27.4 10.5 95 355-449 1002-1119(1202)
482 COG4976 Predicted methyltransf 40.2 76 0.0016 26.4 4.9 55 33-88 5-59 (287)
483 PF03745 DUF309: Domain of unk 39.5 96 0.0021 19.4 6.0 47 390-436 10-61 (62)
484 PF11123 DNA_Packaging_2: DNA 39.4 1.1E+02 0.0023 19.9 4.6 35 72-113 11-45 (82)
485 COG4976 Predicted methyltransf 39.0 2.3E+02 0.0051 23.7 8.1 52 1-53 8-59 (287)
486 PF11838 ERAP1_C: ERAP1-like C 38.9 2.8E+02 0.006 24.6 14.9 141 9-159 111-262 (324)
487 PF10366 Vps39_1: Vacuolar sor 37.6 1.5E+02 0.0033 21.2 8.0 27 241-267 41-67 (108)
488 PF01475 FUR: Ferric uptake re 36.2 81 0.0018 22.9 4.4 49 26-74 10-58 (120)
489 PF09868 DUF2095: Uncharacteri 35.1 1.7E+02 0.0037 21.0 5.5 44 28-72 66-109 (128)
490 PF13762 MNE1: Mitochondrial s 34.7 2.1E+02 0.0045 21.9 10.2 82 25-112 41-128 (145)
491 KOG3807 Predicted membrane pro 34.0 3.4E+02 0.0073 24.1 13.2 56 140-195 281-337 (556)
492 PF00244 14-3-3: 14-3-3 protei 33.8 2.9E+02 0.0063 23.3 12.2 40 175-214 7-46 (236)
493 KOG4521 Nuclear pore complex, 33.7 6.4E+02 0.014 27.2 13.4 127 23-158 983-1126(1480)
494 PF04090 RNA_pol_I_TF: RNA pol 31.7 2.9E+02 0.0062 22.6 7.4 61 344-405 41-102 (199)
495 PF05944 Phage_term_smal: Phag 31.7 2.2E+02 0.0048 21.3 8.3 100 8-118 33-132 (132)
496 KOG2034 Vacuolar sorting prote 31.5 6E+02 0.013 26.3 27.5 300 107-443 366-696 (911)
497 PF14669 Asp_Glu_race_2: Putat 31.3 2.8E+02 0.0062 22.4 14.5 54 315-368 138-205 (233)
498 KOG2422 Uncharacterized conser 31.1 5.1E+02 0.011 25.3 19.2 156 113-268 252-448 (665)
499 PF06957 COPI_C: Coatomer (COP 31.0 2.8E+02 0.006 25.9 7.5 133 319-470 214-355 (422)
500 COG4259 Uncharacterized protei 30.8 1.9E+02 0.0042 20.3 6.5 32 419-452 77-108 (121)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6e-67 Score=507.85 Aligned_cols=455 Identities=23% Similarity=0.357 Sum_probs=433.1
Q ss_pred CCccchHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+++|+.|...+. +++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+++.|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 4889999999999999985 46777888899999999999999999999873 899999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
+|+.|.+.+ +.|+..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 459 lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 459 VLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999988 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC
Q 011362 160 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ--HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH 237 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (487)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.+++|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999986 6789999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 011362 238 TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (487)
+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (487)
+|++.|++++|.++|++|...++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 398 ARDLFLDMEENAVVPNVITFDMLIRGFIR----I-------------------NEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 398 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|++.|+.||..+|..
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999876432 1 123679999999999999999999999
Q ss_pred HHHHHHhcccc
Q 011362 455 VVDLLAKNEIS 465 (487)
Q Consensus 455 l~~~~~~~g~~ 465 (487)
++.++.+.+..
T Consensus 853 vL~cl~~~~~~ 863 (1060)
T PLN03218 853 VLGCLQLPHDA 863 (1060)
T ss_pred HHHHhcccccH
Confidence 99888777766
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6e-65 Score=493.89 Aligned_cols=450 Identities=18% Similarity=0.280 Sum_probs=431.4
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|.+++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|
T Consensus 420 g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred CCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 678899999988864 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
++|.+.+ +.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 496 ~eM~~~G------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 496 HEMVNAG------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHcC------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999988 7899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H--cCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH
Q 011362 162 D--QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV 239 (487)
Q Consensus 162 ~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 239 (487)
. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 6 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 011362 240 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGL 319 (487)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (487)
.+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.++.+|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc----c---
Q 011362 320 CKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN----D--- 392 (487)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~--- 392 (487)
++.|++++|.++|++|...++.||..+|+.++.+|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ +
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999866432 1
Q ss_pred ----------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011362 393 ----------------GQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVV 456 (487)
Q Consensus 393 ----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 456 (487)
+..++|..+|++|.+.|+.||..||..++.+++..+....+..+++.|...+..|+..+|..++
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 2246799999999999999999999999988888899999999999999888899999999999
Q ss_pred HHHHh
Q 011362 457 DLLAK 461 (487)
Q Consensus 457 ~~~~~ 461 (487)
+++++
T Consensus 890 ~g~~~ 894 (1060)
T PLN03218 890 DGFGE 894 (1060)
T ss_pred Hhhcc
Confidence 99854
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-62 Score=487.45 Aligned_cols=455 Identities=22% Similarity=0.315 Sum_probs=285.0
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+.+|++|...|..||..+|+.++.+|...+++..+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 56666666666666666666655555554444444444444444444444444444444444555555555555555555
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
++|. .+|..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|.+.|+.+.|.+++..+.
T Consensus 246 ~~m~----------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 246 DRMP----------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred hcCC----------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 5443 233444555555555555555555555555544444444444444444444444444444444444
Q ss_pred HcCCCCChhhHHHHHHHHHhC-------------------------------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011362 162 DQGVQPNVVTFNVIMDELCKN-------------------------------GKMDEASRLLDLMIQHGVRPDAFTYNTL 210 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~-------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 210 (487)
+.|+.||..+|+.++.+|++. |++++|+++|++|.+.|+.||..+|+.+
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 444444444444444444444 4444444444444444444444444444
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (487)
+.+|++.|+++.|.++++.+.+.|+.++..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCH
Confidence 444444444444444444444444444444444444444444444445444444432 2444555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhc
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSL 370 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (487)
++|..+|++|.. ++.||..+|..++.+|++.|..+.+.+++..+.+.|+.++..+++.|+.+|.+.|++++|.++|+.+
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 555555555543 3566666666666666666666666666666666666677777777788888888888888888876
Q ss_pred cCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCH
Q 011362 371 PCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-EINVMPDA 449 (487)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 449 (487)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 578999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHHHHHHHhcccccccccccccch
Q 011362 450 SIVSIVVDLLAKNEISLNSLPSFTVHE 476 (487)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~~~~~~~~~~ 476 (487)
.+|..++++|++.|++++|.+.+..+|
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 999999999999999977766665554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-61 Score=467.81 Aligned_cols=455 Identities=20% Similarity=0.288 Sum_probs=430.4
Q ss_pred CCccchHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+++.++.+|++.|+++.|.+
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHH
Confidence 378999999999998765 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
+|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|..++.+|...|..+.+.+++..
T Consensus 180 lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 180 LFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999996 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH
Q 011362 160 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV 239 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 239 (487)
+.+.|+.||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999985 458999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 011362 240 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGL 319 (487)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (487)
.+|+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y 401 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 46889999999999
Q ss_pred HhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccC-CCCCCcHHHHHHHHHHHHccCCHHHH
Q 011362 320 CKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPC-GVLVPNVVTYSIMIGGLCNDGQMDKA 398 (487)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (487)
++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999975 68999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccchh
Q 011362 399 RDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVHEQ 477 (487)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 477 (487)
.+++++| +..|+..+|+.++.+|...|+.+.|..+++++.+.+ +.+..+|..+++.|++.|+++++.+.+..+.+
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9998876 468999999999999999999999999999997643 23467999999999999999888777665543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-60 Score=470.88 Aligned_cols=438 Identities=19% Similarity=0.323 Sum_probs=416.4
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|.++|+.|. .||..+|++++.+|.+.|++++|+++|++|...|+.||..+|+.++.+|.+.|+.+.|.++
T Consensus 235 ~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 235 CGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred CCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 378899999999885 4688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+..+.+.+ ..|+..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|
T Consensus 311 ~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 311 HGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999988 799999999999999999999999999999864 68899999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|. .++..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 45788
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC 320 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (487)
+|+.++.+|++.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 5899999999999999999999999999999999999999999999999999
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARD 400 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (487)
+.|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.+
T Consensus 536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 999999999999886 679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 401 LFLDME-ENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 401 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+|+.|. +.|+.|+..+|+.++.+|.+.|+.++|.+++++|. +.||..+|..++.+|...|+.
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCh
Confidence 999998 67999999999999999999999999999999984 789999999999999887777
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-59 Score=451.12 Aligned_cols=429 Identities=21% Similarity=0.309 Sum_probs=410.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFG-CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+...|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++.+.+.+++..|.+.+ +.|+..
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------~~~~~~ 159 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------FEPDQY 159 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCcchH
Confidence 45589999999999999999999999998764 67999999999999999999999999999999988 789999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
+|+.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 999999999999999999999999964 6999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHH
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALS 260 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 260 (487)
+.|....+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. +++..+|+.++.+|++.|++++|.+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999996 5688999999999999999999999
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 011362 261 LYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (487)
+|++|...|+.||..+|+.++.+|++.|++++|.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|.
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---- 387 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP---- 387 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEE-NAVVPNVITFDM 419 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ 419 (487)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999976 699999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccc
Q 011362 420 LIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPS 471 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 471 (487)
++.+|.+.|+.++|.+++++| ++.|+..+|..++.+|...|+.+.+.+.
T Consensus 468 li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999998876 5789999999999999999998554443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-32 Score=280.58 Aligned_cols=451 Identities=12% Similarity=0.042 Sum_probs=356.1
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+.+++.+.... +++..++..++..+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56667777777776653 4466677777777888888888888888777654 445556667777777788888888888
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+++.+.. |.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.
T Consensus 523 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 523 EKVLTID-------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHhC-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8877765 5567777778888888888888888888876653 3456677778888888888888888888887
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
+.. +.+...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 653 3466778888888888888888888888887653 3356677778888888888888888888887764 556777
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (487)
+..++..+...|++++|..+++.+....+ .+...+..+...+...|++++|...+..+.... |+..++..++.++.+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 88888888888888888888888877643 366677778888888999999999998888764 444677778888899
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
.|++++|...++.+.... +.++..+..+...|...|++++|...|+++.+.. +++..+++.++..+...|+ .+|+..
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 999999999999888765 6678888889999999999999999999988764 5677888899999999999 889999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccc
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFT 473 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 473 (487)
++++.+.. +.++.++..+..++...|++++|.+.++++++.+ +.+..++..++.++.+.|+..++++.+.
T Consensus 826 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 826 AEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998763 2356677788888999999999999999999876 4488899999999999999988877654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-31 Score=272.86 Aligned_cols=450 Identities=14% Similarity=0.075 Sum_probs=209.1
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|...++.++... +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|++.+
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 34444444444444432 2234444444444444455555555444444432 223333444444444444444444444
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+.+.+.. +........++..+.+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.
T Consensus 421 ~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 421 ETAAQLD-------PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHhhC-------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444332 112222333334444444444444444444432 22344455555555555555555555555555
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
+... .+...+..+...+...|++++|.++++.+.... +.+..++..+...+.+.|+.++|...++++...+ +.+...
T Consensus 493 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 569 (899)
T TIGR02917 493 SIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEP 569 (899)
T ss_pred hhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhH
Confidence 4321 133344444555555555555555555554432 1234445555555555555555555555554433 333444
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (487)
+..++..|...|++++|..+++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4445555555555555555555554432 2234445555555555555555555555554432 2233444445555555
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
.|++++|..+++++.... +.+..++..++..+...|++++|..+++.+.+.+ +++...+..++..+...|++++|...
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555554432 3334444445555555555555555555544432 33334444444555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccc
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPS 471 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 471 (487)
|+++.... |+..++..++.++...|++++|.+.++++.+.. +.+...+..+...+.+.|+..++++.
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 55554432 222334444444445555555555555544432 33344444444444545555444333
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.3e-24 Score=221.44 Aligned_cols=451 Identities=12% Similarity=0.050 Sum_probs=257.6
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------C--------
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGC------------------E-------- 55 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~-------- 55 (487)
|+.++|+..|+++++.. |.+...+..+...+...|++++|+..++++..... .
T Consensus 161 g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 161 AQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHH
Confidence 55666666666666664 33556666666666667777777776666543210 0
Q ss_pred ------CCHHHH---------------------HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 56 ------PDVFTY---------------------TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 56 ------~~~~~~---------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|+.... ......+...|++++|+..|+++.+.. |.+...+..+..+
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~ 312 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQA 312 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 000000 011233455666667777776666654 4456666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-CHhhH------------HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKP-NVVTY------------TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
+.+.|++++|+..|++..+..... ....| ......+.+.|++++|+..|+++.+... .+...+..+
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~L 391 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGL 391 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 767777777777776666542111 11111 1123345566667777777766666532 244455556
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC--------CCCHhhHHHHHH
Q 011362 176 MDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC--------KHTVFSYSILIN 247 (487)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~ 247 (487)
...+...|++++|++.|+++.+.... +...+..+...+. .++.++|..+++.+..... ......+..+..
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66666677777777777666654221 2333333322221 1122222222222110000 000011122333
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH--------------
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYR-------------- 313 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------- 313 (487)
.+...|++++|++.+++.++..+. +...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHH
Confidence 344455555555555555544222 33344445555555555555555555554432 11222222
Q ss_pred ------------------------------HHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 011362 314 ------------------------------TFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIA 363 (487)
Q Consensus 314 ------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 363 (487)
.....+...|+.++|..+++. .+.++..+..+...+.+.|++++|
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHH
Confidence 233445556666666666551 255666778888889999999999
Q ss_pred HHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 364 LELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
...|+++.... +.+...+..++..+...|++++|+..++.+.+.. +.+...+..+..++...|++++|.++++++...
T Consensus 623 ~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 623 RAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999988763 5567888899999999999999999999887642 224566677888888999999999999998864
Q ss_pred CCC--C---CHHHHHHHHHHHHhccccccccccc
Q 011362 444 NVM--P---DASIVSIVVDLLAKNEISLNSLPSF 472 (487)
Q Consensus 444 ~~~--~---~~~~~~~l~~~~~~~g~~~~~~~~~ 472 (487)
... | +..++..+...+.+.|+..+|++.|
T Consensus 701 ~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 701 AKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 321 1 2245666677888888885555543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.2e-25 Score=222.94 Aligned_cols=422 Identities=12% Similarity=0.056 Sum_probs=332.4
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH------------HHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP-DVFTY------------TTLVNG 67 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------------~~l~~~ 67 (487)
.|++++|+..|+++++.. |.+..++..+..++.+.|++++|+..|+++.+..... ....+ ......
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 488999999999999986 4578899999999999999999999999998764221 11111 123456
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA 147 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 147 (487)
+.+.|++++|+..|+++.+.. |.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 778999999999999999876 5677888889999999999999999999998763 335667777777764 4
Q ss_pred CChhhHHHHHHHHHHcCCC--------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 148 KDWNEAKRLFIEMMDQGVQ--------PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
++.++|+..++.+...... .....+..+...+...|++++|+..|++.++.... +...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 6789999888765432100 01223455677888999999999999999887433 67778889999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccCh---------hhHHHHHHHHHhcCCH
Q 011362 220 VNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV---------VIHNTLFVGLFEIHQV 290 (487)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~ 290 (487)
+++|...++++.... +.+...+..+...+...++.++|+..++.+......++. ..+......+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998764 455666666666778899999999999876543222221 1223456678889999
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhc
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSL 370 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (487)
++|..+++. .+.+...+..+...+.+.|++++|+..|+.+.... |.++..+..++..+...|++++|...++.+
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998872 35566677888999999999999999999999876 667889999999999999999999999988
Q ss_pred cCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--C---CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 371 PCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVV--P---NVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
.+.. +.+..++..+..++...|++++|..+++++...... | +...+..+...+...|++++|.+.|++.+
T Consensus 664 l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 664 PATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8652 345667778888999999999999999999875322 2 22456667888999999999999999986
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=5.1e-25 Score=191.77 Aligned_cols=441 Identities=13% Similarity=0.057 Sum_probs=342.9
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|.+.-...-+.+ +.+....-.+-..+.+..+.+.....-....+.. +.-..+|..+...+-..|++++|+.++
T Consensus 62 gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred cCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 56666666665555554 2233333334445555556655554444444332 445667888999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV-TYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+.+.+.. |...+.|..+..++...|+.+.|.+.|...++. .|+.. ....+.......|+.++|...|.+.
T Consensus 140 ~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 140 RAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 9999876 667889999999999999999999999988876 34433 3334555666789999999999888
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
++.... -...|..|.-.+..+|+...|++.|++..+.... -...|..|...|...+.+++|...+.+..... +....
T Consensus 211 i~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 875332 3567888888899999999999999999876322 35678888999999999999999998887764 55677
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC 320 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (487)
.+..+...|...|+.+.|+..|++.++..+. -+..|+.+..++-..|++.+|.+.+.+.+... +....+.+.+...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 7888888899999999999999999886433 35689999999999999999999999998863 445678889999999
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH-HHHHHHHHHHHccCCHHHHH
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV-VTYSIMIGGLCNDGQMDKAR 399 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 399 (487)
..|.+++|..+|....+.. +.-....+.|...|-++|++++|+..|++.+. +.|+. ..|+.+...|-..|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999988764 44456788999999999999999999999987 46764 68999999999999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcccc
Q 011362 400 DLFLDMEENAVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA-SIVSIVVDLLAKNEIS 465 (487)
Q Consensus 400 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 465 (487)
..+.+++.. .|. ...++.|...|..+|+..+|++.|+..+.. +||. ..+-.++-++.=...|
T Consensus 443 q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 443 QCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcc
Confidence 999999884 455 467788999999999999999999999874 5653 4444444444333333
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-24 Score=187.72 Aligned_cols=425 Identities=15% Similarity=0.137 Sum_probs=350.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
...|..-..+.|++.+|.+.-...-..+ +.+......+-..+....+.+.....-....+.. +.-.++|..+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-------~q~ae~ysn~ 122 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-------PQGAEAYSNL 122 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-------chHHHHHHHH
Confidence 3456667778899999998777665543 3333344445566677777777666655555554 5678999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH-HHHHHHHHhCCC
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF-NVIMDELCKNGK 184 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 184 (487)
...+-..|+++.|+..++.+.+.. +-.+..|..+..++...|+.+.|.+.|.+.++. .|+.... ..+...+-..|+
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcc
Confidence 999999999999999999999874 336889999999999999999999999999885 4554433 334455566899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHH
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSE 264 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (487)
.++|...+.+.++... --...|..|...+-..|+...|+..|++..+.+ |.-...|..|...|...+.++.|+..|.+
T Consensus 200 l~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999999988887632 235678889999999999999999999999875 44567899999999999999999999999
Q ss_pred HHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC
Q 011362 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD-TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFD 343 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 343 (487)
.....+. ....+..+...|...|+.+-|+..+++.++. .|+ ...|+.+..++-..|+..+|...|.+..... +..
T Consensus 278 Al~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~h 353 (966)
T KOG4626|consen 278 ALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNH 353 (966)
T ss_pred HHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Ccc
Confidence 8875332 4567777888899999999999999999986 444 5789999999999999999999999999876 667
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 011362 344 IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN-VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNV-ITFDMLI 421 (487)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 421 (487)
..+.+.|...|...|.+++|..+|.....- .|. ....+.|...|-++|++++|+..+++.++ +.|+. ..|+.+.
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 889999999999999999999999998874 444 46789999999999999999999999998 67774 6788999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcccccccccccc
Q 011362 422 RGFIRINEPSKVIELLHKMKEINVMPD-ASIVSIVVDLLAKNEISLNSLPSFT 473 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~~ 473 (487)
..|-..|+.+.|.+.+.++.. +.|. ....+.+...+...|+..++|++|.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999999999999988 4565 4678899999999999988887754
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=5.8e-22 Score=190.03 Aligned_cols=401 Identities=12% Similarity=-0.002 Sum_probs=294.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+......+.+.|++++|+..|++++.. .|+...|..+..+|...|++++|+..++...+.+ |.+...+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHH
Confidence 4556788888999999999999998876 5677788888899999999999999999998876 567788889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC--------------------
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG-------------------- 164 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------- 164 (487)
+..+|...|++++|+..|..+...+.. +......++..+... .+........+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC
Confidence 999999999999998888766544211 111111111111110 1111111111110
Q ss_pred -----------CCCCh-hhHHHHHHH---HHhCCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHcCCCHhHHHHHH
Q 011362 165 -----------VQPNV-VTFNVIMDE---LCKNGKMDEASRLLDLMIQHG-V-RPDAFTYNTLLDGFCLTGRVNHAKELF 227 (487)
Q Consensus 165 -----------~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (487)
..+.. ..+..+... ....+++++|.+.|+.....+ . +.....+..+...+...|++++|...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00000 011111111 122467899999999998764 2 234567888888899999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011362 228 VSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAA 307 (487)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 307 (487)
++..... +.....|..+..++...|++++|...++++....+ .+..++..+...+...|++++|...|++..+.. +.
T Consensus 355 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 9998774 44567888899999999999999999999988643 357788889999999999999999999998864 44
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCC-----cH-HH
Q 011362 308 DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVP-----NV-VT 381 (487)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~-~~ 381 (487)
+...+..+..++.+.|++++|+..++...... +.++..++.+...+...|++++|...|++........ +. ..
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 56777888889999999999999999998764 5678889999999999999999999999987642111 11 11
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
++..+..+...|++++|..++++...... .+...+..+...+...|++++|.+.|++..+..
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22222334447999999999999987642 245678889999999999999999999998753
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=8.2e-22 Score=189.02 Aligned_cols=393 Identities=16% Similarity=0.047 Sum_probs=291.3
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++... |+...|..+..+|...|++++|++.++++++.. +.+..++..+..++...|++++|+..
T Consensus 140 ~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred cCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999999874 577889999999999999999999999999875 55677899999999999999999998
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC---------------------------CCCCC
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK---------------------------NIKPN 133 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~ 133 (487)
|..+...+ +.+......++..+........+...++.-... ...+.
T Consensus 217 ~~~~~~~~-------~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 217 LTASCIID-------GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHhC-------CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 87776543 111111111111111100011111111100000 00000
Q ss_pred -HhhHHHHHHHH---HhcCChhhHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 011362 134 -VVTYTSVIRGF---CYAKDWNEAKRLFIEMMDQG-VQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTY 207 (487)
Q Consensus 134 -~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 207 (487)
...+..+...+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..++..++... .....|
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHH
Confidence 00111111111 22468999999999998764 223 445677788888999999999999999988632 246688
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc
Q 011362 208 NTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI 287 (487)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (487)
..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.+...+. +...+..+...+...
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHC
Confidence 888999999999999999999998875 567888999999999999999999999999987543 566777888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChH------hHHHHHHHHHhcCCHH
Q 011362 288 HQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIR------AYNSLIDGLCKSGRLE 361 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~ 361 (487)
|++++|...++...+.. +.+...+..+...+...|++++|...|+.........+.. .++..+..+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999998763 4557888899999999999999999999998764321111 1222223344579999
Q ss_pred HHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
+|..++++..... +.+...+..++.++...|++++|...|++..+.
T Consensus 526 eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 526 EAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999987753 344567889999999999999999999999875
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.5e-23 Score=188.25 Aligned_cols=312 Identities=15% Similarity=0.127 Sum_probs=225.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC
Q 011362 141 IRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD---AFTYNTLLDGFCLT 217 (487)
Q Consensus 141 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 217 (487)
...+...|++++|...|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ..++..++..+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3344556667777777777766532 2444566666666777777777777776665432211 23556667777777
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccCh----hhHHHHHHHHHhcCCHHHH
Q 011362 218 GRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV----VIHNTLFVGLFEIHQVERA 293 (487)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 293 (487)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...+..+.. ..+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777776653 445667777777777778888888777777765433221 1344566677788888888
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 294 FKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
...++++.+.. +.+...+..+...+.+.|++++|..+++++...+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888887753 33456777788888999999999999999887643333466788889999999999999999998875
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCHH
Q 011362 374 VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR---INEPSKVIELLHKMKEINVMPDAS 450 (487)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 450 (487)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+..++..++++|.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466666788889999999999999999998875 5888888888877664 558889999999999887778776
Q ss_pred HHHHHHHHHHhcccc
Q 011362 451 IVSIVVDLLAKNEIS 465 (487)
Q Consensus 451 ~~~~l~~~~~~~g~~ 465 (487)
..|.++|-.
T Consensus 355 ------~~c~~cg~~ 363 (389)
T PRK11788 355 ------YRCRNCGFT 363 (389)
T ss_pred ------EECCCCCCC
Confidence 336666665
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=1.2e-20 Score=184.26 Aligned_cols=430 Identities=13% Similarity=0.025 Sum_probs=318.5
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
+..++. -.. .+.+.....-.+.+....|+.++|++++.++.... +.+...+..+...+...|++++|..+++++.+.
T Consensus 2 ~~~~~~-~~~-~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALK-SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhc-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555 222 24455556667788889999999999999988633 556667889999999999999999999999887
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (487)
. |.+...+..++.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+.
T Consensus 79 ~-------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~- 148 (765)
T PRK10049 79 E-------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ- 148 (765)
T ss_pred C-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 5 6677888899999999999999999999998873 44666 888899999999999999999999987443
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHc-----CCCH---hHHHHHHHHHHHc
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA------FTYNTLLDGFCL-----TGRV---NHAKELFVSMESM 233 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~ 233 (487)
+...+..+..++...+..+.|+..++.+.. .|+. .....++..... .+++ ++|+..++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 555666677788888999999998886654 2221 111222222221 2234 6788888888754
Q ss_pred -CCCCCHh-hHH----HHHHHHHccCCHhHHHHHHHHHHHCCCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011362 234 -GCKHTVF-SYS----ILINGYCKNKEIEGALSLYSEMLSKGIK-PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA 306 (487)
Q Consensus 234 -~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (487)
...|+.. .+. ..+..+...|++++|+..|+.+...+.. |+. ....+...+...|++++|...|+++.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1122211 111 1133456779999999999999887532 322 2233577899999999999999998765321
Q ss_pred C---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-----------CCC---hHhHHHHHHHHHhcCCHHHHHHHHHh
Q 011362 307 A---DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC-----------EFD---IRAYNSLIDGLCKSGRLEIALELFRS 369 (487)
Q Consensus 307 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (487)
. .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|...+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 124456667778999999999999999886531 122 23455677788899999999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 011362 370 LPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPD 448 (487)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (487)
+.... +.+...+..++..+...|++++|+..++++.... |+ ...+...+..+...|++++|..+++++++. .|+
T Consensus 385 al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd 459 (765)
T PRK10049 385 LAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQ 459 (765)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCC
Confidence 98763 5667888999999999999999999999999853 54 566667777888999999999999999984 577
Q ss_pred HHHHHHHHHHH
Q 011362 449 ASIVSIVVDLL 459 (487)
Q Consensus 449 ~~~~~~l~~~~ 459 (487)
......+-..+
T Consensus 460 ~~~~~~~~~~~ 470 (765)
T PRK10049 460 DPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHH
Confidence 66666555544
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.6e-20 Score=183.31 Aligned_cols=446 Identities=12% Similarity=0.020 Sum_probs=257.3
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+..|+.+++..+ .+..++..|...|...|++++|+..+++..+.. |+...+..++..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHH
Confidence 899999999999999974 468899999999999999999999999999874 4444444333222 8999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhcCChhh
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDG--------LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV-IRGFCYAKDWNE 152 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 152 (487)
+++.... |.+...+..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.++|++
T Consensus 132 e~l~~~~-------P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 132 EELLAQQ-------KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHHhC-------CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 9999876 4555666555554 4444 34444443 2222223334444444 677777777777
Q ss_pred HHHHHHHHHHcCCC------------------------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-
Q 011362 153 AKRLFIEMMDQGVQ------------------------------PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR- 201 (487)
Q Consensus 153 a~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 201 (487)
|++++.++.+.++. -+...+..++..|.+.|+.++|.++++.+......
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 77777777665422 12333334445555556666666665554432110
Q ss_pred CCHHHHH------------------------------HHHHHHHcC----------------------------------
Q 011362 202 PDAFTYN------------------------------TLLDGFCLT---------------------------------- 217 (487)
Q Consensus 202 ~~~~~~~------------------------------~l~~~~~~~---------------------------------- 217 (487)
|...++. .++..+.+.
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 1111100 001111111
Q ss_pred -----------------------------CCHhHHHHHHHHHHHc-C-CCCCHhhHHHHHHHHHcc--------------
Q 011362 218 -----------------------------GRVNHAKELFVSMESM-G-CKHTVFSYSILINGYCKN-------------- 252 (487)
Q Consensus 218 -----------------------------~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~-------------- 252 (487)
|+.++|.++++..... + ...+......++..|.+.
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 2222222222222110 0 000000111122222221
Q ss_pred -------------------------------------------------CCHhHHHHHHHHHHHCCCccChhhHHHHHHH
Q 011362 253 -------------------------------------------------KEIEGALSLYSEMLSKGIKPDVVIHNTLFVG 283 (487)
Q Consensus 253 -------------------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (487)
+++++|+..+.+..... |+......+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 23333333333333221 222222222233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 011362 284 LFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIA 363 (487)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 363 (487)
+...|++++|...++++... +|+...+..+...+.+.|++++|...++...... +.+...+..+.......|++++|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 34566666666666665443 2333344455556666777777777777776554 33333333333444455778888
Q ss_pred HHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 364 LELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
...+++..+. .|+...+..+..++.+.|++++|+..+++...... .+...+..+..++...|++++|...+++..+.
T Consensus 596 l~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8887777764 45677777777888888888888888888877532 24566677777788888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcccccccccccc
Q 011362 444 NVMPDASIVSIVVDLLAKNEISLNSLPSFT 473 (487)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 473 (487)
. +-+...+..+..++...|+..+++..+.
T Consensus 673 ~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 673 L-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4 4456677777888888888765555443
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=4e-21 Score=183.50 Aligned_cols=323 Identities=15% Similarity=0.084 Sum_probs=262.5
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+.+++..+... |.+...+..++.++...|++++|+..++++.... +.+...+..+...+...|++++|+..
T Consensus 55 ~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred cCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 488999999999999886 4467777778888889999999999999999875 55677888889999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++++.+.. |.+...+..++.++...|++++|...++.+..... .+...+..+ ..+...|++++|...++.+
T Consensus 133 l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 133 AEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 99999875 56788889999999999999999999998876532 234444333 3477889999999999998
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH----HHHHHHHHHHcCCC
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH----AKELFVSMESMGCK 236 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~ 236 (487)
.+....++......+...+...|++++|+..++.+.... +.+...+..+...+...|++++ |...++++.... |
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 776443444455556678889999999999999998764 3367788888999999999885 789999988775 5
Q ss_pred CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH-HhHHHH
Q 011362 237 HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT-WTYRTF 315 (487)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 315 (487)
.+...+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...++.+.... |+. ..+..+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~ 358 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYA 358 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHH
Confidence 67788889999999999999999999999886433 55667778888999999999999999988763 333 334445
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 316 IDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
..++...|+.++|...|+.+.+..
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC
Confidence 677889999999999999988664
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.5e-22 Score=184.86 Aligned_cols=307 Identities=17% Similarity=0.116 Sum_probs=251.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
....+...|++++|+..|+++.+.+ +.+..++..++..+...|++++|..+++.+...+... .......+..++..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~La~~ 116 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT---REQRLLALQELGQD 116 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHH
Confidence 4556778899999999999999875 4566788999999999999999999999998854100 01123568889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhCCC
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNGK 184 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 184 (487)
|...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998763 456788999999999999999999999999886543322 234567778899999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHH
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSE 264 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (487)
+++|..+++++.+.. +.+...+..+...+.+.|++++|.+.++++...+......++..++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998764 3356678888999999999999999999998764222345678899999999999999999999
Q ss_pred HHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh---CCCHhHHHHHHHHHHHcCCC
Q 011362 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK---NGYIVEAVELFHTLRILKCE 341 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 341 (487)
+.... |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+..++..+++.+.+.++.
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 98864 45566688899999999999999999998885 5788788877777664 55899999999999876666
Q ss_pred CChH
Q 011362 342 FDIR 345 (487)
Q Consensus 342 ~~~~ 345 (487)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 6655
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=7.7e-21 Score=185.52 Aligned_cols=405 Identities=12% Similarity=-0.002 Sum_probs=308.6
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|+.++|++++..+.... +.+...+..+...+...|++++|.++|+++++.. +.+...+..++.++...|++++|+..
T Consensus 28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 489999999999998743 4567779999999999999999999999998874 55677788888999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++++.+.. |.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|+..++.+
T Consensus 106 l~~~l~~~-------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 106 AKQLVSGA-------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHhC-------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999876 56677 8899999999999999999999999874 336667777888888899999999998866
Q ss_pred HHcCCCCCh------hhHHHHHHHHHh-----CCCh---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHcCCCH
Q 011362 161 MDQGVQPNV------VTFNVIMDELCK-----NGKM---DEASRLLDLMIQH-GVRPDAF-TY----NTLLDGFCLTGRV 220 (487)
Q Consensus 161 ~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~ 220 (487)
.. .|+. .....+++.... .+++ ++|+..++.+.+. ...|+.. .+ ...+..+...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 54 2221 112222332221 2234 6788888888854 2222221 11 1113345677999
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc---ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011362 221 NHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIHNTLFVGLFEIHQVERAFKLF 297 (487)
Q Consensus 221 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 297 (487)
++|+..|+.+.+.+.+........+...|...|++++|+..|+++....... .......+..++...+++++|...+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999887522112223335778999999999999999988753221 1234566677889999999999999
Q ss_pred HHHHHcCC-----------CCc---HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 011362 298 DEMQRNGV-----------AAD---TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIA 363 (487)
Q Consensus 298 ~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 363 (487)
+.+.+... .|+ ...+..+...+...|++++|+..++++.... |.+...+..++..+...|++++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 99987531 122 2345567778899999999999999998775 66788999999999999999999
Q ss_pred HHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011362 364 LELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRG 423 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (487)
++.++++.... +.+...+...+..+...|++++|+.+++++++. .|+......+-+.
T Consensus 413 ~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 413 ENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 99999999863 444677778888899999999999999999985 4555544444333
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=6.8e-21 Score=181.91 Aligned_cols=334 Identities=13% Similarity=0.031 Sum_probs=271.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
-...++..+.+.|++++|..+++..+... +.+...+..++.+....|+++.|+..++++.... |.+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------P~~~~a~~~ 115 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------VCQPEDVLL 115 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------CCChHHHHH
Confidence 34556777889999999999999988875 4455667777788888999999999999999876 667888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
+...+...|++++|...++++.... +.+...+..++..+...|++++|...++.+....+. +...+..+ ..+...|+
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC
Confidence 9999999999999999999998863 346778888999999999999999999988766433 23333333 34788999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH----HHH
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG----ALS 260 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 260 (487)
+++|...++.+.+....++......+...+...|++++|...++.+.... +.+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 99999999998776443445555666778889999999999999998775 5677888889999999999985 799
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 011362 261 LYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (487)
.+++.....+. +...+..+...+...|++++|...++++.+.. +.+......+..++.+.|++++|...++.+....
T Consensus 272 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 272 HWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 99999886443 66788889999999999999999999998864 3455677788889999999999999999998764
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
+.+...+..+..++...|++++|...|+++.+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333344445667788999999999999988764
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3e-20 Score=170.54 Aligned_cols=428 Identities=12% Similarity=0.068 Sum_probs=224.3
Q ss_pred CccchHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTP--DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV--FTYTTLVNGLCRTSHTIVA 77 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 77 (487)
|+++.+..+...+......- -+..|..+.++|...|++++|...|.+..+.. ++. -.+.-+++.+.+.|+++.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHH
Confidence 34444444444444432110 12234445555555555555555554444432 222 2233444555555555555
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG----FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEA 153 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 153 (487)
...|+++.+.. |.+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+.....+..
T Consensus 362 ~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s- 432 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS- 432 (1018)
T ss_pred HHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-
Confidence 55555555543 344444455554444443 2344444444444432 2344555555555443333332
Q ss_pred HHHHHHHH----HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHcCCCH
Q 011362 154 KRLFIEMM----DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH---GVR------PDAFTYNTLLDGFCLTGRV 220 (487)
Q Consensus 154 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~ 220 (487)
+..|..+. ..+-.+.+...|.+...+...|+++.|...|...... ... ++..+-..+....-..+++
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 44443332 2233345555566666666666666666666555443 011 1122233344444555566
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011362 221 NHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300 (487)
Q Consensus 221 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (487)
+.|.+.|+.+.+.. |.-...|..++.+....+...+|...+......+- .++..+..+...+.....+..|.+-|..+
T Consensus 513 ~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 66666666665542 22233333333233334555666666666555322 24444454555666666666666655555
Q ss_pred HHcCC-CCcHHhHHHHHHHHHh------------CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 011362 301 QRNGV-AADTWTYRTFIDGLCK------------NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELF 367 (487)
Q Consensus 301 ~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (487)
.+.-. .+|+.+...|...|.+ .+..++|+++|.+++... |.+..+-|.+.-+++..|++.+|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 44321 2355555555554432 234566777777777655 566667777777777777777777777
Q ss_pred HhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 368 RSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN-AVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
.+..+.. .....+|-.+..+|..+|++..|+++|+...+. ...-+......|.+++.+.|.+.+|.+.+.......
T Consensus 670 sqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 670 SQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 7776653 234456777777777777777777777776543 223356666777777777777777777777766643
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=8.5e-19 Score=167.95 Aligned_cols=435 Identities=12% Similarity=0.032 Sum_probs=299.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|+++.|+..|+.+++..+.....++ .++..+...|+.++|+..+++.... .+........+...+...|++++|+++
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 37888999999999887533112344 7788888889999999999988721 122333344446688888999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 125 y~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 125 WQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99998876 566777778888888899999999999888776 445555544444444456666699999998
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH---H--cCCC---HhHHHHH
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFT------YNTLLDGF---C--LTGR---VNHAKEL 226 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~--~~~~---~~~a~~~ 226 (487)
.+..+. +...+..+..++.+.|-...|+++...-... +.+...- ...+++.- . ...+ .+.|+.-
T Consensus 196 l~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 887432 5666777888888888888888766543211 1111100 01111100 0 1122 2344444
Q ss_pred HHHHHHc-C-CCCCHh----hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011362 227 FVSMESM-G-CKHTVF----SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300 (487)
Q Consensus 227 ~~~~~~~-~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (487)
++.+... + .|+... ...-.+-++...+++.++++.|+.+...+.+....+...+..+|...+++++|..++..+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4444431 1 122211 223445667788999999999999988775544557778889999999999999999988
Q ss_pred HHcCC-----CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-----------CCC---hHhHHHHHHHHHhcCCHH
Q 011362 301 QRNGV-----AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC-----------EFD---IRAYNSLIDGLCKSGRLE 361 (487)
Q Consensus 301 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~ 361 (487)
..... +++......|.-++...+++++|..+++.+.+..+ .|+ ......++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 66431 22333356788888999999999999999886321 111 122344567778899999
Q ss_pred HHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP-NVITFDMLIRGFIRINEPSKVIELLHKM 440 (487)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (487)
+|.+.++++.... |-|......+...+...|.+.+|+..++.+... .| +..+....+.++...|++.+|..+.+.+
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999987663 667888888899999999999999999777664 34 4556667778888889999999999888
Q ss_pred HhcCCCCCHHHHH
Q 011362 441 KEINVMPDASIVS 453 (487)
Q Consensus 441 ~~~~~~~~~~~~~ 453 (487)
.+. .|+.....
T Consensus 511 ~~~--~Pe~~~~~ 521 (822)
T PRK14574 511 ISR--SPEDIPSQ 521 (822)
T ss_pred Hhh--CCCchhHH
Confidence 774 35444333
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.6e-20 Score=168.32 Aligned_cols=451 Identities=12% Similarity=0.040 Sum_probs=269.6
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011362 6 HGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE--PDVFTYTTLVNGLCRTSHTIVALNLFEE 83 (487)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 83 (487)
.+++++.++-..+ +.++.+.+.|...+.-.|+++.+..+...+...... .-...|..+.++|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444444443 234555555555555555555555555555443211 1122355555556666666666666555
Q ss_pred HHhCCCCCccccccc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----ChhhHHHHHH
Q 011362 84 MANGNGEFGVVCEPN-TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK----DWNEAKRLFI 158 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 158 (487)
..+.. +.+ ...+..+++.+...|+++.+...|+.+.+. .+.+..+...|...|...+ ..+.|..++.
T Consensus 333 s~k~~-------~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 333 SLKAD-------NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHccC-------CCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 55543 111 334445555566666666666666555554 2334445555555554443 2344444444
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc-
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM----IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM- 233 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 233 (487)
+..+.. +.|...|..+...+.... ...++.+|..+ ...+..+.+...|.+...+...|++.+|...|......
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 444432 224445554444443332 22224444332 23344455666666666667777777777776665543
Q ss_pred --CCC------CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011362 234 --GCK------HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGV 305 (487)
Q Consensus 234 --~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (487)
... ++..+-..+..++-..++.+.|.+.|..+....+. -+..|..++...-..++..+|...++.+...+
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 111 11122334455555666677777777776664211 22233344333334466677777777776643
Q ss_pred CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCChHhHHHHHHHHHh------------cCCHHHHHHHHHhccC
Q 011362 306 AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC-EFDIRAYNSLIDGLCK------------SGRLEIALELFRSLPC 372 (487)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~ 372 (487)
..++..+..+...+.+...+.-|..-|..+.+... .+|+.+...|...|.. .+..++|+++|.++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 44555666666677777777777776666553321 3566776677765543 2457889999999887
Q ss_pred CCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCCHHH
Q 011362 373 GVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE-INVMPDASI 451 (487)
Q Consensus 373 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 451 (487)
.. +.|...-|.+..+++..|++.+|..+|.+..+... ....+|..+.++|...|++-.|+++|+.... ....-+..+
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 64 66788889999999999999999999999988643 2567788999999999999999999999875 444556788
Q ss_pred HHHHHHHHHhcccccccccc
Q 011362 452 VSIVVDLLAKNEISLNSLPS 471 (487)
Q Consensus 452 ~~~l~~~~~~~g~~~~~~~~ 471 (487)
...|..++.+.|++.++.+.
T Consensus 719 l~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 89999999999999555443
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.6e-18 Score=169.53 Aligned_cols=258 Identities=9% Similarity=-0.025 Sum_probs=199.4
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV 282 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 282 (487)
+...+..+..++.. ++.++|...+...... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45556666666655 6777888877777665 345444444455567899999999999998664 344455667778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 011362 283 GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362 (487)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (487)
.+...|+.++|...+....+.. +.....+..+.......|++++|...+++..... |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999999998864 3333444444455556799999999999999774 468889999999999999999
Q ss_pred HHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
|...+++..... +.+...++.+..++...|++++|+..+++..+... -+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999874 55677888999999999999999999999998643 3677888999999999999999999999998
Q ss_pred cCCCCCH-HHHHHHHHHHHhccccccccccc
Q 011362 443 INVMPDA-SIVSIVVDLLAKNEISLNSLPSF 472 (487)
Q Consensus 443 ~~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~ 472 (487)
.. |+. .+.....+...+..++..+.+.+
T Consensus 706 l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 706 DI--DNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred cC--CCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 54 543 56666666666666665554443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=8.6e-18 Score=161.11 Aligned_cols=439 Identities=12% Similarity=0.057 Sum_probs=318.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV--FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+.+-..-+....+.|+++.|+..|+++++.. |+. ..+ .++..+...|+.++|+..+++..... +....
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-------n~~~~ 103 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-------NISSR 103 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-------CCCHH
Confidence 3333334555679999999999999999874 443 334 88888889999999999999998422 34455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
....++..+...|++++|+++|+++.+.. +-++..+..++..+...++.++|++.++++... .|+...+..++..+.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~ 180 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH
Confidence 55555778999999999999999999874 336777888889999999999999999999876 445555544444454
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh------HHHHHHHH---H-
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS------YSILINGY---C- 250 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~- 250 (487)
..++..+|++.++++.+.. +.+...+..+..+..+.|-...|.++...-...- .+.... ...+++.- .
T Consensus 181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccc
Confidence 5667767999999999874 3367788888999999999999988776533221 111100 11111110 0
Q ss_pred -ccC---CHhHHHHHHHHHHHC-CCccCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 011362 251 -KNK---EIEGALSLYSEMLSK-GIKPDV-----VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC 320 (487)
Q Consensus 251 -~~~---~~~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (487)
... -.+.|+.-++.+... +..|.. ....-.+.++...++..++++.++.+...+.+....+...+..+|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 111 234555666665542 111221 1222345677889999999999999998886656678889999999
Q ss_pred hCCCHhHHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCC-----------CCc--H-HH
Q 011362 321 KNGYIVEAVELFHTLRILKC-----EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVL-----------VPN--V-VT 381 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~--~-~~ 381 (487)
..+++++|..++..+..... +++......|..+|...+++++|..+++.+.+... .|| - ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999999999999975431 23444457889999999999999999999876311 122 2 23
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAK 461 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (487)
+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.+.++.+.... +-+..+....+.++-.
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHh
Confidence 3445677888999999999999998864 3488889999999999999999999998877653 4445666777888888
Q ss_pred ccccccc-------ccccccchhh
Q 011362 462 NEISLNS-------LPSFTVHEQQ 478 (487)
Q Consensus 462 ~g~~~~~-------~~~~~~~~~~ 478 (487)
.|++.++ ++.+|..++-
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhH
Confidence 8988544 4455555533
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.8e-18 Score=146.04 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=169.7
Q ss_pred HccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHH
Q 011362 250 CKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAV 329 (487)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 329 (487)
...|++++|...|++.+..+..- ...+..+.-.+...|+.++|+++|-++..- ...+...+..+...|....+...|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 45689999999999998763332 222223344567889999999999877543 2346677888888999999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 330 ELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
+++...... +|.|+.++..|...|-+.|+-.+|.+.+-.--+. ++-+..+...|...|....-+++++.+|++..-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 999888765 4889999999999999999999999887665544 567889999999999999899999999999865
Q ss_pred CCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 410 VVPNVITFDMLIRGF-IRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 410 ~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.|+..-|..++..| .+.|++++|.++|+..... ++.|......++..+...|..
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 689999998777655 5789999999999998764 688889999999888887765
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=9e-16 Score=128.87 Aligned_cols=431 Identities=16% Similarity=0.208 Sum_probs=305.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--ccCChHH-HHHHHHHHHhCCCCCccc-----
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC--RTSHTIV-ALNLFEEMANGNGEFGVV----- 94 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~-a~~~~~~~~~~~~~~~~~----- 94 (487)
+++=+.|+. ...+|.++++.-+|+.|...|++.+...-..|++.-+ ...+..- -.+.|-.|.+.+.+.+.+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 455566665 4678999999999999999998888877666655432 2222211 123333333333221111
Q ss_pred --------cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 011362 95 --------CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 95 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
.|.+..++..+|..+++.-..+.|.+++++......+.+..+||.+|.+-.-. .-.++..+|......
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 46678899999999999999999999999998887788999999998865433 237899999999999
Q ss_pred CChhhHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH-HHHHHHHHHHc----CC--
Q 011362 167 PNVVTFNVIMDELCKNGKMDE----ASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH-AKELFVSMESM----GC-- 235 (487)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~-- 235 (487)
||..|+|.++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++... .+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56788999999999999999999999999888754 44555555432 12
Q ss_pred --CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC----CccCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011362 236 --KHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG----IKPDV---VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA 306 (487)
Q Consensus 236 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (487)
+.+...|..-+..|.+..+.+-|.++..-+.... +.|+. .-|..+....+.....+.....|+.+.-+-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2344556677777888889888888766554321 22332 24566777788889999999999999888788
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CH---H----------HHHHHH-----
Q 011362 307 ADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG-RL---E----------IALELF----- 367 (487)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~---~----------~a~~~~----- 367 (487)
|+..+...++++....++++-.-+++..+...|...+......++..+++.. ++ + -|..++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999889998888888888877664444444444444444332 11 0 011111
Q ss_pred --HhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 368 --RSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV----VPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 368 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
.++.+. .-.....+..+..+.+.|+.++|.+++.-+.+.+- .|.......++..-.+.+++..|..+++-|.
T Consensus 511 ~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 122222 33455667777788999999999999999865532 2333444466777788899999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHH
Q 011362 442 EINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~ 460 (487)
..+.+.-......+.+.|.
T Consensus 589 ~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 589 AFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HcCchhhhHHHHHHHHhcC
Confidence 7764443334444444443
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=1.4e-15 Score=134.45 Aligned_cols=436 Identities=12% Similarity=0.034 Sum_probs=241.9
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH--
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE-- 82 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-- 82 (487)
+.|+.++.++.+.- |.+...|.+ |.+..-++.|..+++++.+. ++.+..+|..-...--.+|+.+...+++.
T Consensus 393 ~darilL~rAvecc-p~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 393 EDARILLERAVECC-PQSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHHhc-cchHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556666666553 334443333 33344555566666555543 34455555544444445555555444443
Q ss_pred -------------------------------------HHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 83 -------------------------------------EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQM 125 (487)
Q Consensus 83 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 125 (487)
.....+.+ -.....+|..-...|.+.+.++-|..+|...
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE----eed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE----EEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc----cchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 33332211 1112234445555555555566666666555
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 011362 126 KDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAF 205 (487)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 205 (487)
++. .+-+...|......--..|..++...+|+++...- +-....|......+...|+...|..++..+.+.... +..
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 554 23344455555554445556666666666665542 223444445555556666666666666666655322 555
Q ss_pred HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHH
Q 011362 206 TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLF 285 (487)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (487)
.|..-+..-.....++.|..+|.+.... .++...|..-+..---.++.++|.+++++.++. ++.-...|..+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 6666666666666667777666666554 345555555555555566666777666666654 2222335555566666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 011362 286 EIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALE 365 (487)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 365 (487)
+.++.+.|...|..-.+. ++.....+..+...-.+.|.+-+|..++++....+ |.+...|...+.+-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555543 23334455555555566666777777777666554 5566666666777677777777766
Q ss_pred HHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011362 366 LFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINV 445 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (487)
++.++++. ++.+...|..-|...-+.++-......+++. ..|+.....+...+....++++|.+.|++.+..+
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d- 847 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD- 847 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 66665544 2333444544444444444433333333222 2355566667777777778888888888887754
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 011362 446 MPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~ 465 (487)
+....+|..+.......|.-
T Consensus 848 ~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred CccchHHHHHHHHHHHhCCH
Confidence 33346676666666667744
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.2e-15 Score=128.11 Aligned_cols=397 Identities=15% Similarity=0.202 Sum_probs=287.3
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCHHHH-HHHHHHHHhcC-------------------CCCCHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKG--LCAESRIMEA-AALFTKLRVFG-------------------CEPDVF 59 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~-------------------~~~~~~ 59 (487)
|.+.++.-+|++|.+.|.+.+...-..|++. |....++.=| .+.|-.|...| .+.+..
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e 208 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE 208 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence 6778899999999999988877766665543 3233333211 22333332221 244667
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
++..+|.++++-...+.|.+++++..... ...+..+||.+|.+-.-. .-.+++.+|....+.||..|||.
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 89999999999999999999999998877 578899999998765432 23788999999999999999999
Q ss_pred HHHHHHhcCChhh----HHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHH-HHHHHHHHHH----CCC---CC-CHHH
Q 011362 140 VIRGFCYAKDWNE----AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQ----HGV---RP-DAFT 206 (487)
Q Consensus 140 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~---~~-~~~~ 206 (487)
++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++.. ... .| |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998865 46788899999999999999999999998888744 4445554443 222 22 4556
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcC----CCCC---HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHH
Q 011362 207 YNTLLDGFCLTGRVNHAKELFVSMESMG----CKHT---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNT 279 (487)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 279 (487)
|...+..|.+..+.+-|..+..-+.... ++++ ..-|..+....|+....+.-...|+.|..+-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7777888889999998888776665421 2232 23356677788889999999999999998878889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCC-CH--------hH-----HHHHH-------HHHHHc
Q 011362 280 LFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNG-YI--------VE-----AVELF-------HTLRIL 338 (487)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~-------~~~~~~ 338 (487)
++++....+.++-..+++..+...|..........++..+++.. ++ .. |..++ .++.+.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99999999999999999988887765555444444444444433 11 11 11111 112222
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011362 339 KCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV-LVP---NVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV 410 (487)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 410 (487)
.......+.++-.+.+.|+.++|.+++..+...+ --| .......++......+++..|..+++-|...+.
T Consensus 519 --~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 519 --DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred --cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3456677888888999999999999999885433 223 333344566667788899999999999977643
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4e-15 Score=126.66 Aligned_cols=434 Identities=11% Similarity=0.061 Sum_probs=325.8
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV-FTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+++.+|+.+|++++..+ ..+...|...+.+=.+...+..|..+++++... -|-+ ..|...+.+--..|+...|.++
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46788999999999987 458888999999999999999999999999876 3433 3455566666678999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
|+...+ ..|+...|.+.|..-.+.+.++.|..+|++..-. .|++.+|....+.--+.|....|..+|+.+
T Consensus 164 ferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 164 FERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999988 4689999999999999999999999999999874 589999999999989999999999999988
Q ss_pred HHc-CC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHhHHHHH--------HH
Q 011362 161 MDQ-GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKEL--------FV 228 (487)
Q Consensus 161 ~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~ 228 (487)
++. |- ..+...+......-..+..++.|.-+|.-.+.+ ++.+ ...|..+...--+-|+....... ++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 764 11 112233444444445677888999999888876 3323 34444444443445554433332 23
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh--hHHHHHHH--------HHhcCCHHHHHHHHH
Q 011362 229 SMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV--IHNTLFVG--------LFEIHQVERAFKLFD 298 (487)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~ 298 (487)
.+.+.+ +.|-.+|-..+..-...|+.+...++|+..+.. ++|-.. .|...+-. -....+.+.+.+++.
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334443 677888888888888899999999999999886 333221 22222211 135788999999999
Q ss_pred HHHHcCCCCcHHhHHHHHHH----HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 011362 299 EMQRNGVAADTWTYRTFIDG----LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (487)
..++. ++-...|+..+--. ..++.++..|.+++...+. .-|...++...|..-.+.++++.+..++++.++.+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99884 44445555555444 4578899999999998874 46788889999999999999999999999999874
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 011362 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA-VVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVS 453 (487)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 453 (487)
+-|-.+|......-...|+.+.|..+|.-+++.. .......|...|..-...|.++.|..+++++++.. +...+|.
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWi 544 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWI 544 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHH
Confidence 4566788888888888999999999999998752 22234567777777778999999999999999754 3344555
Q ss_pred HHHH
Q 011362 454 IVVD 457 (487)
Q Consensus 454 ~l~~ 457 (487)
....
T Consensus 545 sFA~ 548 (677)
T KOG1915|consen 545 SFAK 548 (677)
T ss_pred hHHH
Confidence 5543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=2e-15 Score=138.32 Aligned_cols=431 Identities=13% Similarity=0.081 Sum_probs=294.5
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|..++..+++.. |.+...|..|..+|-++|+.+++...+-.+.... +.|...|..+.......|.+++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 89999999999999997 5588899999999999999999999876665554 556788999999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH----HHHHHHhcCChhhHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS----VIRGFCYAKDWNEAKRLF 157 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~ 157 (487)
.++.+.. |++....-.-...|-+.|+...|.+-|.++.+...+.+..-+.. .++.+...++-+.|.+.+
T Consensus 231 ~rAI~~~-------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 231 SRAIQAN-------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHhcC-------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999987 77777777888899999999999999999988754333333333 455666777779999999
Q ss_pred HHHHHc-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHH
Q 011362 158 IEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV---------------------------RPDAFTYNT 209 (487)
Q Consensus 158 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~ 209 (487)
+..... +-..+...++.++..+.+...++.+......+..... .++..++ .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 887662 2234556778888888888888888888777665211 1122221 1
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc
Q 011362 210 LLDGFCLTGRVNHAKELFVSMESMG--CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI 287 (487)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (487)
+.-++.+....+....+.......+ ...+...|..+..+|...|++..|+.++..+......-+...|..+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223333444444444444444444 33345667777888888888888888888887765555666778888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH--------cCCCCChHhHHHHHHHHHhcCC
Q 011362 288 HQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI--------LKCEFDIRAYNSLIDGLCKSGR 359 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~ 359 (487)
|..+.|...|+.++... +.+...-..|...+.+.|+.++|.+.+..+.. ...+|...........+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 88888888888887752 33445566666777788888888888777542 1223344444444455555555
Q ss_pred HHHHHHHHHhccCC----------------------------------------C----------CC-----------Cc
Q 011362 360 LEIALELFRSLPCG----------------------------------------V----------LV-----------PN 378 (487)
Q Consensus 360 ~~~a~~~~~~~~~~----------------------------------------~----------~~-----------~~ 378 (487)
.++-..+...|+.. . .. .+
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 54432222221100 0 00 01
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHH---HH-HHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 379 V----VTYSIMIGGLCNDGQMDKARDLFLDMEENAVV-PNVI---TF-DMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 379 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~---~~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
. ..+.-++.++++.+++++|+.+...+...... -+.. .+ ...+.+.+..+++..|...++.|...
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1 11234566778888999999988888754211 1111 22 34455667888999999998888753
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=6.9e-17 Score=136.60 Aligned_cols=410 Identities=14% Similarity=0.112 Sum_probs=264.3
Q ss_pred chHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHH
Q 011362 5 SHGFVVLGRILKSCFTPDAVTF-TSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.+|+..|+-+++..--|+...+ -.+...+.+.+++.+|+++|+..+..-...+ ..+.+.+...+.+.|+++.|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 4555555555544333444333 2345667777788888888877765521222 2234555566778888888888
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC------------CCHhhHHHHH-----H
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIK------------PNVVTYTSVI-----R 142 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~-----~ 142 (487)
-|+...+.. |+..+-..|+-++..-|+.++..+.|.+|...-.. |+....+..+ +
T Consensus 298 sfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 298 SFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred hHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 888877743 55554444555555667788888888887654221 2222222111 1
Q ss_pred HHHhcC--ChhhHHHHHHHHHHcCCCCChh-------------hH--------HHHHHHHHhCCChHHHHHHHHHHHHCC
Q 011362 143 GFCYAK--DWNEAKRLFIEMMDQGVQPNVV-------------TF--------NVIMDELCKNGKMDEASRLLDLMIQHG 199 (487)
Q Consensus 143 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 199 (487)
-.-+.+ +.++++-.-.+++.--+.|+-. .+ ..-...+.+.|+++.|++++.-+.+..
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd 449 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD 449 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc
Confidence 111111 1122221111121111112110 00 011235677788888777777665542
Q ss_pred CCCCHHH------------------------------------HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 011362 200 VRPDAFT------------------------------------YNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYS 243 (487)
Q Consensus 200 ~~~~~~~------------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 243 (487)
-+.-... ...-.......|++++|.+.+++....+..- .....
T Consensus 450 nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealf 528 (840)
T KOG2003|consen 450 NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALF 528 (840)
T ss_pred chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHH
Confidence 2111111 1111111224578999999999988654222 22233
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCC
Q 011362 244 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNG 323 (487)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (487)
.+.-.+-..|+.++|+++|-++..- ...+..++..+...|....+..+|++++.+.... ++.|+..+..+...|-+.|
T Consensus 529 niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 529 NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEG 606 (840)
T ss_pred HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhccc
Confidence 3344567889999999999887653 2236778888899999999999999999888775 6778899999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH-HccCCHHHHHHHH
Q 011362 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL-CNDGQMDKARDLF 402 (487)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~ 402 (487)
+-..|.+.+-.--.. +|-+..+..-|...|....-+++++.+|++..- +.|+..-|..++..| .+.|++++|..++
T Consensus 607 dksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 607 DKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred chhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999887655433 467888888888899999999999999998765 489999999887655 5689999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRINE 429 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (487)
+..-+. ++-|..++..|++.+...|-
T Consensus 684 k~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHh-CccchHHHHHHHHHhccccc
Confidence 998765 56688899999998887763
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=9.6e-14 Score=123.02 Aligned_cols=441 Identities=12% Similarity=0.028 Sum_probs=339.5
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
..+++.+++. +|.++..|...+ ...+.+.|+-++.++.+. ++.+... ..++++..-|+.|..++++..+.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dL----wlAlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDL----WLALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666665 355566665543 345666688888887765 2334443 34566677889999999999886
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQM----KDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
+|.+...|..-...--..|+.+...+++++- ...|+..+...|..=...|-..|..-.+..+....+..
T Consensus 436 -------iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 436 -------IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred -------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 4778888888888888889999888887764 44688888888988888888888888888888888877
Q ss_pred CCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 164 GVQP--NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 164 ~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
|+.- -..+|..-...|.+.+.++-+..+|...++. .+.+...|......--..|..+.-..+|+++...- +.....
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~l 586 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEIL 586 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhH
Confidence 7653 2457777888899999999999999988876 34466778777777778888999999999888762 555666
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (487)
|.....-+-..|+...|..++....+..+. +...|...+.......+++.|..+|.+.... .|+...|..-+...--
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 777777788889999999999998886544 6778888888888999999999999988874 5677777777776677
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
.+..++|.+++++.++. ++.-...|..+.+.+.+.++.+.|.+.|..-.+. ++-.+..|-.+...--+.|.+-.|..+
T Consensus 664 ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 88999999999888875 3555678888899999999999999998877665 345567788888888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc---ccccccccc
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS---LNSLPSFTV 474 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~~~~~~~~ 474 (487)
+++..-.+.. +...|...++.-.+.|+.+.|..++.++++. .+.+...|..-|....+.++- .+++++...
T Consensus 742 ldrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~ 815 (913)
T KOG0495|consen 742 LDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH 815 (913)
T ss_pred HHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence 9999877544 7788889999999999999999988888764 355666777777666665554 455554443
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1.2e-14 Score=133.38 Aligned_cols=373 Identities=15% Similarity=0.101 Sum_probs=283.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
+...-..+..+...|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-.+...+ |.|...|
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------p~d~e~W 210 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------PKDYELW 210 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------CCChHHH
Confidence 3334444555667799999999999999885 6677889999999999999999999988887766 6778999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH----HHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFN----VIMDE 178 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~ 178 (487)
..+.....+.|.++.|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++....++.|..-+. ..++.
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999884 4566666667788899999999999999998875433333333 34556
Q ss_pred HHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-----------------------
Q 011362 179 LCKNGKMDEASRLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG----------------------- 234 (487)
Q Consensus 179 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------- 234 (487)
+...++-+.|.+.++..... +-..+...++.++..+.+...++.+...........
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 67777779999998887763 233456678888899999999999988877765511
Q ss_pred ----CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 011362 235 ----CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG--IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD 308 (487)
Q Consensus 235 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (487)
..++... ..+.-++...+..+....+........ +.-+...+..+..++...|.+..|+.++..+......-+
T Consensus 370 ~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 1122222 123334455555555555555555555 333556788899999999999999999999998765556
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC--------CCCCcHH
Q 011362 309 TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG--------VLVPNVV 380 (487)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~ 380 (487)
...|..+..+|...|..++|.+.|+.++... |.+...-..|...+.+.|+.++|.+.+..+... ...|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 7789999999999999999999999999875 556667778888899999999999999986532 2345555
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
........+...|+.++=..+...|+
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55556667778888777555444443
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.1e-13 Score=118.15 Aligned_cols=416 Identities=10% Similarity=0.022 Sum_probs=319.3
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+-|+.-+..+ ..+...|....+.=..++++..|..+|++++... ..+...|...+..-.+......|..+++.....-
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 3455555443 4466677777777778899999999999999765 5677788888888899999999999999988753
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN 168 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 168 (487)
|.-...|...+..--..|++..|.++|++..+. .|+...|.+.+..-.+.+.++.|..+|++.+- +.|+
T Consensus 138 -------PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~ 206 (677)
T KOG1915|consen 138 -------PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPK 206 (677)
T ss_pred -------chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--eccc
Confidence 444567777777777789999999999998875 79999999999999999999999999999876 3589
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC--HhhHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT--VFSYSI 244 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 244 (487)
..+|....+.-.+.|....+..+|+...+.-- .-+...+.++...-.++..++.|.-+|+-..+.= |.+ ...|..
T Consensus 207 v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~ 285 (677)
T KOG1915|consen 207 VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHH
Confidence 99999999999999999999999998876411 1123345555555557788999999998887752 333 445555
Q ss_pred HHHHHHccCCHhHHHHH--------HHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH--hHHH
Q 011362 245 LINGYCKNKEIEGALSL--------YSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTW--TYRT 314 (487)
Q Consensus 245 l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 314 (487)
+...=-+-|+....... |+.++..+ +.|..+|-..+......|+.+...++|++++.+ ++|-.. .+..
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~R 363 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRR 363 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHH
Confidence 55554556665554443 33444443 347778888888888999999999999999987 455321 1111
Q ss_pred ---HH-----HHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHH----HHHHhcCCHHHHHHHHHhccCCCCCCcHHHH
Q 011362 315 ---FI-----DGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLI----DGLCKSGRLEIALELFRSLPCGVLVPNVVTY 382 (487)
Q Consensus 315 ---l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 382 (487)
+- -.-....+.+.+.++++..++. +|....++.-+- ..-.++.++..|.+++..++. ..|...+|
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlF 440 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHH
Confidence 11 1113578899999999999874 455555655443 334578899999999998875 47888999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 383 SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
...+..-.+.++++.+..++++.++.++. +..+|......-...|+.+.|..+|+-+++..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999997543 67888888887888999999999999998643
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=5.9e-15 Score=134.06 Aligned_cols=293 Identities=13% Similarity=0.014 Sum_probs=206.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK 111 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (487)
....|+++.|.+.+.+..+. .|++. .+.....+....|+++.|.+.+.+..+..+ .+...........+..
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p------~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG------NDNILVEIARTRILLA 165 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------cCchHHHHHHHHHHHH
Confidence 35789999999999887765 34433 344556778888999999999999876531 1112344445788888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH-HHHHHH---HhCCChHH
Q 011362 112 EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFN-VIMDEL---CKNGKMDE 187 (487)
Q Consensus 112 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~ 187 (487)
.|+++.|...++.+.+.. |-+..++..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..++
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998874 346778888999999999999999999999887654 333231 111111 22233333
Q ss_pred HHHHHHHHHHCCC---CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHccCCHhHHHHHH
Q 011362 188 ASRLLDLMIQHGV---RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS--YSILINGYCKNKEIEGALSLY 262 (487)
Q Consensus 188 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 262 (487)
....+..+.+... +.+...+..+...+...|+.++|.+.+++..+.. +.+... ...........++.+.+.+.+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3445554444321 1377888888899999999999999999988764 222211 122222234457788888888
Q ss_pred HHHHHCCCccCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 011362 263 SEMLSKGIKPDV--VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 263 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 337 (487)
+...+..+. ++ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 323 e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888775322 44 566788899999999999999999544433478888888999999999999999999988653
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.5e-14 Score=130.61 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=215.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH--HHHHHHHh
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYT-TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT--TIIDGLCK 111 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 111 (487)
..|++++|.+.+....+.. +++..+. ....+..+.|+++.|...+.++.+.. |+..... .....+..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--------~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--------DNDQLPVEITRVRIQLA 165 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHH
Confidence 4699999998888766542 2333333 33455578999999999999998754 4443322 34678888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhCCC
Q 011362 112 EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV-------VTFNVIMDELCKNGK 184 (487)
Q Consensus 112 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~ 184 (487)
.|+++.|...++++.+.. |-++.....+...|.+.|+|++|.+++..+.+.+..++. ..|..++.......+
T Consensus 166 ~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998875 447788888999999999999999999999887654222 133344444445556
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHH
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSE 264 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (487)
.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +++... .++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 66777777766443 3457888888999999999999999999988874 455422 234444566999999999999
Q ss_pred HHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 011362 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 337 (487)
..+..+ -|+.....+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 320 ~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 887644 36677888899999999999999999999985 68888888999999999999999999998764
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=2.7e-14 Score=129.02 Aligned_cols=284 Identities=12% Similarity=0.084 Sum_probs=202.5
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHcCCCHhHHH
Q 011362 147 AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTY--NTLLDGFCLTGRVNHAK 224 (487)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~ 224 (487)
.|++++|.+.+....+....| ...+.....+....|+++.+..++.++.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 688888887777655542121 222333344557888888888888888765 3343222 23356778888888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh-------hHHHHHHHHHhcCCHHHHHHHH
Q 011362 225 ELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-------IHNTLFVGLFEIHQVERAFKLF 297 (487)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 297 (487)
..++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++.. ++..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887775 6677788888888888888888888888888765442221 2222233333344455555555
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCC
Q 011362 298 DEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVP 377 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (487)
+.+-+. .+.++.....+...+...|+.++|..++++..+. ++++... ++.+....++++++.+..+...+.. +.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 555332 2456778888888999999999999999888874 4555332 2333445688999999998888763 55
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 378 NVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
|...+..+.+.+.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677888899999999999999999999884 68888888899999999999999999988764
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=1.8e-14 Score=130.91 Aligned_cols=294 Identities=11% Similarity=0.021 Sum_probs=197.3
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHH
Q 011362 145 CYAKDWNEAKRLFIEMMDQGVQPNV-VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (487)
...|+++.|.+.+.+..+.. |+. ..+-....+....|+++.+.+++....+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35788888888887776653 332 233344566777888888888888876653222223334456777788888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH---HHHhcCCHHHHHHHHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV---GLFEIHQVERAFKLFDEM 300 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~ 300 (487)
...++.+.+.. |.++..+..+...+...|+++.|.+.+..+.+.+..+.......-.. .....+..++....+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888775 56677788888888888888888888888887754422221111111 112233333334455555
Q ss_pred HHcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 011362 301 QRNGV---AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRA-YNSLIDGLCKSGRLEIALELFRSLPCGVLV 376 (487)
Q Consensus 301 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 376 (487)
.+... +.+...+..++..+...|+.++|.+.+++..+..+...... ...........++.+.+.+.++...+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 44321 13677788888889999999999999999887642221111 1111122234577888888888877652 3
Q ss_pred CcH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 377 PNV--VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 377 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
.|+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344 566788899999999999999999544433568888888999999999999999999988653
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.5e-13 Score=113.53 Aligned_cols=306 Identities=12% Similarity=0.063 Sum_probs=166.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCC
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR--PDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 219 (487)
.++-...+.+++.+-.......|++-+...-+....+.....++++|+.+|+++.+..+- .|..+|...+-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 344444556666666666666665544444444555555666667777777666665211 134444444322 2211
Q ss_pred HhHHHHHHHH-HHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 220 VNHAKELFVS-MESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFD 298 (487)
Q Consensus 220 ~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (487)
- .+..+.. ....+ +..+.|...+.+.|.-.++.++|...|++.++.++. ....|..+..-|....+...|...++
T Consensus 313 s--kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H--HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 1111111 11111 233445556666666666666666666666665433 34455666666666666666666666
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc
Q 011362 299 EMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN 378 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 378 (487)
.+.+-+ +.|-..|-.+.++|.-.+.+.-|+-+|++..... |.|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 666643 4455666666666666666666666666666554 5566666666666666666666666666666544 234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEEN----AVVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIV 452 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 452 (487)
...+..+...|-+.++..+|...|.+.++. |...+ ...-..|..-+.+.+++++|-......... .+...--
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea 543 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEA 543 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence 456666666666666666666666655431 21111 112222444455666666666555444432 3333333
Q ss_pred HHHHHH
Q 011362 453 SIVVDL 458 (487)
Q Consensus 453 ~~l~~~ 458 (487)
..++..
T Consensus 544 k~LlRe 549 (559)
T KOG1155|consen 544 KALLRE 549 (559)
T ss_pred HHHHHH
Confidence 444433
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=2.9e-17 Score=141.88 Aligned_cols=260 Identities=15% Similarity=0.107 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFG-CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
.+...+.+.|++++|++++++..... .+.+...|..+.......++++.|++.++++...+ +.++..+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccc
Confidence 34555666666666666664433322 12333344445555555666666666666666544 23444555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhCCCh
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKM 185 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 185 (487)
.. ...+++++|.++++...+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 55 4556666666665554433 1344445555555566666666666666554321 223444555555555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHH
Q 011362 186 DEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEM 265 (487)
Q Consensus 186 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (487)
++|++.+++.++.... |......++..+...|+.+++.++++...... +.++..+..+..+|...|+.++|+..+++.
T Consensus 163 ~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 6666666665554211 34455555555555566555555555554442 334444555555555555555555555555
Q ss_pred HHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011362 266 LSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300 (487)
Q Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (487)
....+ .|+.....+..++...|+.++|..+..++
T Consensus 241 ~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 LKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHST-T-HHHHHHHHHHHT---------------
T ss_pred ccccc-ccccccccccccccccccccccccccccc
Confidence 54322 24455555555555555555555555443
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=2.4e-17 Score=142.42 Aligned_cols=254 Identities=16% Similarity=0.142 Sum_probs=115.2
Q ss_pred CCccchHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+++++...... ++.+...|..+...+...++++.|++.++++...+ +.++..+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccc
Confidence 488999999997766554 35567778888888889999999999999999875 3356667777777 79999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN-IKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
+++...+. .+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 99 ~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 99 LAEKAYER--------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccc--------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99887654 3566778888999999999999999999987542 34577889999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 238 (487)
+..+..+. +......++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|...+++..... +.|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 99987433 57778889999999999999999998887763 4466778889999999999999999999998865 678
Q ss_pred HhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 239 VFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
+.....+..++...|+.++|.++..++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88999999999999999999999887654
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2e-13 Score=116.87 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=113.3
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHH
Q 011362 214 FCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERA 293 (487)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (487)
+.-.|+.-.|..-|+..++.. +.+...|-.+..+|...++.++.++.|.+....++. ++.+|..-.+...-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 334555556666666555553 222223555555566666666666666665554433 444555555555555666666
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 294 FKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
..-|++..+.. +.+...|..+.-+..+.+.+++++..|++..+. +|.-+..|+-....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 66666655532 222334444444444555666666666665543 3445555666666666666666666666555442
Q ss_pred C-----CCCcHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 374 V-----LVPNVVTY--SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 374 ~-----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
. +..++..+ -.++. +--.+++..|..+++++.+...+ ....|..|...-...|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 00011111 11111 11235666666666666554222 23445555555566666666666666554
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.2e-13 Score=114.91 Aligned_cols=363 Identities=11% Similarity=0.032 Sum_probs=254.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch--
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT-- 99 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 99 (487)
|+..+......+.+.|....|+..|......- |..-.+|..|.... -+. +......... +.+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~----e~~~~l~~~l-------~~~~h~ 227 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI----EILSILVVGL-------PSDMHW 227 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH----HHHHHHHhcC-------cccchH
Confidence 44444445555666677777777776665442 33444444444332 111 1222221111 1111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMD 177 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 177 (487)
..--.+..++....+.+++..-.+.....|.+.+...-+....+.....|+++|+.+|+++.+..+- -|..+|..++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1112234556666678888888888888888766666666677778889999999999999887321 14556665543
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG 257 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (487)
. +..+. .+.++..-...-.+--+.|.-.+.+-|.-.++.++|...|+...+.+ |.....|+.+.+-|....+...
T Consensus 308 v--~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 V--KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred H--HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 3 32221 12222211111112234566777888888999999999999999987 6677889999999999999999
Q ss_pred HHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 011362 258 ALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 258 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 337 (487)
|++.|+..++-.+. |...|-.+.++|.-.+-+.=|+-.|++..... +.|...+..+.++|.+.++.++|+..|.....
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999987544 88899999999999999999999999998863 66789999999999999999999999999998
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC----C-CCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 338 LKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG----V-LVP-NVVTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
.+ ..+...+..|...|.+.++.++|...|.+.++. | +.| ....--.|...+.+.+++++|.........
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77 567789999999999999999999999876641 2 223 223333456667788888888776655544
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=8.2e-14 Score=113.00 Aligned_cols=275 Identities=12% Similarity=0.089 Sum_probs=149.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF 114 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (487)
-.++.++|++.|-+|.+.. +.+..+..+|.+.|.+.|..+.|+.+.+.+.++.. .+......+...|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd---lT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD---LTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHhhh
Confidence 3456667777777766543 33444555666777777777777777776665431 1111122344455666666677
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhCCChHHHHH
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 190 (487)
++.|+++|..+.+.+. --......|+..|-...+|++|++.-+++.+.+..+.. ..|..+...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 7777777766665432 23445566666676677777777776666665443321 123344444445556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC
Q 011362 191 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 270 (487)
++.+..+.+.. .+..--.+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 66666554322 23333344555666666666666666666554444445555566666666666666666666655422
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 011362 271 KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGL 319 (487)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (487)
.......+........-.+.|...+.+-... .|+...+..++..-
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 2222233333333444444444444443332 45555555555443
No 47
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=4.5e-13 Score=110.20 Aligned_cols=421 Identities=12% Similarity=0.061 Sum_probs=247.2
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
++..|+.+++--...+-.....+---+..++.+.|++++|+..+..+.... .++...+..+...+.-.|.+.+|.++-.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 566777777776655433222334446788889999999999998887754 5666777777777788889999988877
Q ss_pred HHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 83 EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
+..+ ++..-..+.....+.++-++-....+.+... ..--.+|.......-.+.+|++++.+...
T Consensus 116 ka~k-----------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 116 KAPK-----------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred hCCC-----------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6433 3444555556666777777766666665542 23344566666666788999999999877
Q ss_pred cCCCCChhhHHHHH-HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-------
Q 011362 163 QGVQPNVVTFNVIM-DELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG------- 234 (487)
Q Consensus 163 ~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 234 (487)
. .|.-...|..+ -+|.+..-++-+.+++.-.++. ++.++...+..+....+.=+-..|..-.+.+.+.+
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 5 34444444433 4677888888888888877765 23233334433322222211112222222221110
Q ss_pred -------------------C-----CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCC-
Q 011362 235 -------------------C-----KHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQ- 289 (487)
Q Consensus 235 -------------------~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 289 (487)
+ ..-+.....++-.|.+.+++++|..+.+++... ++.-|..-...+...|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhh
Confidence 0 011233345556677778888887776654321 22222222222333333
Q ss_pred ------HHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 011362 290 ------VERAFKLFDEMQRNGVAADT-WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362 (487)
Q Consensus 290 ------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (487)
..-|.+.|.-.-+++..-|. .--..+...+.-..++++.+.+++.+...-...|... -.+.++++..|++.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHH
Confidence 33444555444444333222 2233445555556677777777777765533333333 356788888888888
Q ss_pred HHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHH
Q 011362 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITF-DMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
|.++|-.+....++....-...+.++|.+++.++-|+.++-++.. +.+..++ ..+...|.+.+.+--|.+.|+.+.
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 888888777554333333334556788888888888776554432 2233333 344566778888877777777776
Q ss_pred hcCCCCCHHHHH
Q 011362 442 EINVMPDASIVS 453 (487)
Q Consensus 442 ~~~~~~~~~~~~ 453 (487)
.. .|++..|.
T Consensus 489 ~l--DP~pEnWe 498 (557)
T KOG3785|consen 489 IL--DPTPENWE 498 (557)
T ss_pred cc--CCCccccC
Confidence 63 46666664
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=8.6e-15 Score=130.10 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhH
Q 011362 38 RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDK 117 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 117 (487)
+..+|+..|.++... +.-.......++.+|...+++++|.++|+.+.+..+-. -.+.+.|.+.+-.+-+ +-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r----v~~meiyST~LWHLq~----~v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR----VKGMEIYSTTLWHLQD----EV 404 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccchhHHHHHHHHHHh----hH
Confidence 456677777664333 23333455566677777777777777777776655321 2244555555544322 11
Q ss_pred HHHHH-HHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011362 118 AKELL-LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 118 a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 196 (487)
++..+ +.+... .+-.+.+|..+..+|.-+++.+.|++.|++.++.... ...+|+.+..-+.....++.|...|+..+
T Consensus 405 ~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 405 ALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22222 122222 2335667777777777777777777777776664211 45566666666666666777777776665
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhh
Q 011362 197 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 276 (487)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 276 (487)
..... +-..|..+...|.+.++++.|+-.|+++.+.+ |.+......+...+.+.|+.++|+.++++....+.. |+..
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 44211 33344555666667777777777776666655 455555666666666667777777777766665443 3444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
....+..+...+++++|+..++++++. ++.+...+..+...|.+.|+.+.|+.-|--+.+..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 444455556666666676666666664 23334555566666666666666666666665543
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=1.9e-12 Score=108.52 Aligned_cols=292 Identities=13% Similarity=0.111 Sum_probs=223.1
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHH
Q 011362 146 YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 225 (487)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (487)
..|+|.+|+++..+..+.+..| ...|..-+.+....|+.+.+-+++.++.+....++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3789999999999888876554 344566667778889999999999988876445566667777788888999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh-------hHHHHHHHHHhcCCHHHHHHHHH
Q 011362 226 LFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-------IHNTLFVGLFEIHQVERAFKLFD 298 (487)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 298 (487)
-+.++.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+.. ++..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 888888876 6677888889999999999999999999999887655543 44555555555555555555665
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc
Q 011362 299 EMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN 378 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 378 (487)
..-.. ...++.....++.-+.++|+.++|.++..+..+.+..++ . ...-.+.+-++.+.-++..+...... +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 55433 345666777888889999999999999999988766555 2 22233456777777777777665542 445
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMP 447 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (487)
+..+.+|...|.+.+.+.+|...|+...+ ..|+..+|..+.+++.+.|++.+|.++.++.+..-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 67888999999999999999999998887 46899999999999999999999999988877443333
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.6e-13 Score=110.15 Aligned_cols=288 Identities=10% Similarity=0.063 Sum_probs=220.2
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~ 78 (487)
++.++|+.+|-.+++.+ +.+..+--+|.+.+.+.|..+.|+++.+.+.++.--+. ..+...|.+-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 57899999999999976 44677788899999999999999999999987521111 124566788899999999999
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChhhHH
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN----VVTYTSVIRGFCYAKDWNEAK 154 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 154 (487)
++|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+. ...|.-|...+....+++.|.
T Consensus 128 ~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 128 DIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred HHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999998765 44567888999999999999999999999988764433 235666777777788999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 155 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
.++.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|...|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999886433 3344445677889999999999999999998766667788899999999999999999999988763
Q ss_pred CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 011362 235 CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI---HQVERAFKLFDEMQR 302 (487)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 302 (487)
+....-..+...-....-.+.|...+.+-+.. .|+...+..++...... |...+.+..+..|..
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 34444455555544455556666555544443 48888888888876543 334445555555543
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.9e-14 Score=119.71 Aligned_cols=421 Identities=12% Similarity=0.007 Sum_probs=265.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
.+.....-+.+.|.+++|++.|.++++. .|+ +.-|.....+|...|++++..+--.+..+.+ |.-...+.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-------P~Y~KAl~ 187 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-------PDYVKALL 187 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-------cHHHHHHH
Confidence 3555667788889999999999998886 566 5567778888888999999888888888765 34456667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-cC--CCCChhhHHHHHHHH
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK-NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-QG--VQPNVVTFNVIMDEL 179 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~ 179 (487)
.-.+++-..|++++|+.-..-..-. |+. +..+- .++.-..+ ..|..-.++-.+ .+ +-|+..........+
T Consensus 188 RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 188 RRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 7777777788887775433322111 111 11111 11111111 122222222222 11 123333333332222
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCHhHHHHHHHHHHHc---CCC---CC------HhhHHHHH
Q 011362 180 CKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL-TGRVNHAKELFVSMESM---GCK---HT------VFSYSILI 246 (487)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~---~~------~~~~~~l~ 246 (487)
...-.. .+...+...|...-..+-..+.. ...+..|...+.+-... ... .| ..+...-.
T Consensus 262 ~~~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 262 HADPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred cccccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 110000 00000000011000000000000 01122332222221100 000 01 11222223
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHh
Q 011362 247 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIV 326 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (487)
..+.-.|+.-.|..-|+..+.....++ ..|..+...|....+.++....|....+.+ +.++.+|..-.+.+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 345567899999999999998755533 337888888999999999999999999875 456778888888888999999
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 327 EAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 327 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
+|..-|++.+... |.+...|..+..+..+.+.++++...|++.+.. ++..+..|+.....+..+++++.|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999999876 567777888888888899999999999999876 46667899999999999999999999999998
Q ss_pred hCCCCCC-------HH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccch
Q 011362 407 ENAVVPN-------VI--TFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 476 (487)
Q Consensus 407 ~~~~~~~-------~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 476 (487)
+. .|+ .. +-..++-.- -.+++..|..+++++.+.+ +-....+..+....-..|+..++++-|..+.
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 74 333 11 112222222 3389999999999999865 2334567888888899999999998887654
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=8.9e-13 Score=115.15 Aligned_cols=284 Identities=11% Similarity=0.001 Sum_probs=195.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILIN 247 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (487)
+......-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- |..+.+|..+..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33344444555667778888888888877763 3455555555667777777666666666666553 666777888888
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhH
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVE 327 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 327 (487)
.|...|+.++|.+.|.+....+.. -...|..+...+.-.+..++|...+..+-+. ++-....+--+..-|.+.+....
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 888888888888888877654332 2346777778888888888888888776654 11122223334445777888888
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC------CCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 328 AVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG------VLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 328 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
|..+|....... |.|+...+.+.-.....+.+.+|..+|+..+.. ...--..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888888877654 667777777777777778888888888766521 0011334677788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
+++.+... +.+..++.++.-.|...|+.+.|.+.|.+.+- +.|+..+...+++..
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 88887763 33777888888888888888888888888876 557776665555433
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=8.4e-13 Score=110.56 Aligned_cols=292 Identities=12% Similarity=0.076 Sum_probs=141.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
.|++.+|+++..+..+.+ +.....|..-+.+.-+.|+.+.+-.++.+..+.-..++.....+..+.....|+.
T Consensus 97 eG~~~qAEkl~~rnae~~-------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 455555555555544443 2233444444455555555555555555554442233444444455555555555
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
..|..-.+++.+.+.. .+.......++|.+.|++.....++..+.+.+.-.+...-..
T Consensus 170 ~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------- 227 (400)
T COG3071 170 PAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------- 227 (400)
T ss_pred hhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------
Confidence 5555555555554333 344445555555555555555555555555544322211000
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011362 231 ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTW 310 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 310 (487)
...++..+++-....+..+.-...++..... ...++..-..++.-+.+.|+.++|.++..+..+.+..|.
T Consensus 228 -------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-- 297 (400)
T COG3071 228 -------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-- 297 (400)
T ss_pred -------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--
Confidence 0122333343333333333333344333322 122344444455555555555555555555555443332
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
. ...-.+.+-++...-++..+...+.. +.++..+.+|...|.+.+.+.+|...|+..... .|+..+|+.+..++.
T Consensus 298 -L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~ 372 (400)
T COG3071 298 -L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALD 372 (400)
T ss_pred -H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHH
Confidence 1 11112334455554444444444332 344455556666666666666666666655543 456666666666666
Q ss_pred ccCCHHHHHHHHHHHH
Q 011362 391 NDGQMDKARDLFLDME 406 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~ 406 (487)
+.|+..+|..+.++..
T Consensus 373 ~~g~~~~A~~~r~e~L 388 (400)
T COG3071 373 QLGEPEEAEQVRREAL 388 (400)
T ss_pred HcCChHHHHHHHHHHH
Confidence 6666666666655554
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.7e-14 Score=126.17 Aligned_cols=288 Identities=13% Similarity=0.035 Sum_probs=203.8
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHhHHHH
Q 011362 148 KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV--RPDAFTYNTLLDGFCLTGRVNHAKE 225 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (487)
-++.+|+..|..+..+ +.-+..+...+.++|...+++++|.++|+.+.+... .-+..+|...+..+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567888888885554 232445666778888888899999999988877531 1245666666554321 12222
Q ss_pred HH-HHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011362 226 LF-VSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG 304 (487)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (487)
.+ +.+.+.. +..+.+|.++.++|.-+++++.|++.|++.+..+.. ...+|..+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 2333332 667788888999998889999999998888875332 45567767677777888888888888877532
Q ss_pred CCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHH
Q 011362 305 VAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSI 384 (487)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (487)
+-+-..|.-+...|.+.++++.|+-.|+++.+.+ |.+......+...+.+.|+.++|+.+++++.... +.|+..-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 2223455556777888888888988888888776 5667777778888888888889999888887654 345544455
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 385 MIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
.+..+...+++++|+..++++.+. ++-+...|..+.+.|.+.|+.+.|+.-|--|.+.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 566677788888998888888874 2224566777888888888888888888888775533
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=1.6e-11 Score=109.15 Aligned_cols=450 Identities=14% Similarity=0.052 Sum_probs=288.9
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
++|...++..+.+++. .+-...+.....-.+...|+-++|........+.. ..+...|..++-.+....++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 5677778888888885 45567776666666777888888888888877654 455667888888888888899999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
..+...+ +.|...+.-+...-++.|+++.....-..+.+.. +.....|..++.++.-.|+...|..+++...
T Consensus 99 ~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 99 RNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888876 6677788777777777888888877777776652 2245567778888888888999988888887
Q ss_pred HcC-CCCChhhHHHHH------HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 162 DQG-VQPNVVTFNVIM------DELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 162 ~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
+.. -.|+...+.... ....+.|..+.|.+.+..-... +......-..-...+.+.+++++|..++..+...+
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 653 245555444322 2345677778887777655433 11122222334556778888999999998888774
Q ss_pred CCCCHhhHH-HHHHHHHccCCHhHHH-HHHHHHHHCCCccChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 011362 235 CKHTVFSYS-ILINGYCKNKEIEGAL-SLYSEMLSKGIKPDVVIHNTL-FVGLFEIHQVERAFKLFDEMQRNGVAADTWT 311 (487)
Q Consensus 235 ~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (487)
||...|. .+..++.+-.+.-++. .+|....+. ++ .......+ +.......-.+....++....+.|+++-...
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~-r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YP-RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Cc-ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 4444444 4444544333333444 555555443 11 11111111 1222222233445556667777776553332
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHH--------Hc----------CCCCChHhH--HHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 312 YRTFIDGLCKNGYIVEAVELFHTLR--------IL----------KCEFDIRAY--NSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 312 ~~~l~~~~~~~~~~~~a~~~~~~~~--------~~----------~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
+..+ |-. +...- +++++. .. .-+|++..| ..++..+-..|+++.|...++..+
T Consensus 326 l~SL---yk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 326 LRSL---YKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred hHHH---Hhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 2222 211 11111 222221 11 014555444 456777888999999999999999
Q ss_pred CCCCCCcH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--C
Q 011362 372 CGVLVPNV-VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMP--D 448 (487)
Q Consensus 372 ~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~ 448 (487)
+. .|+. ..|..-.+.+...|++++|...+++..+.. .+|...=..-+.-..++++.++|.++.....+.|... +
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 86 5654 566667788999999999999999998864 3355443356666778999999999999988766411 1
Q ss_pred H----HHHH--HHHHHHHhcccccccccccccch
Q 011362 449 A----SIVS--IVVDLLAKNEISLNSLPSFTVHE 476 (487)
Q Consensus 449 ~----~~~~--~l~~~~~~~g~~~~~~~~~~~~~ 476 (487)
- -.|- .-+++|.+.|++-.|+++|...+
T Consensus 476 L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 476 LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 0 1121 22467888888888888877655
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=2.2e-11 Score=108.40 Aligned_cols=421 Identities=14% Similarity=0.104 Sum_probs=272.6
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+|+-++|.......++.+ ..+.++|..+.-.+....++++|++.|..++..+ +.|..++..+.-.-++.|+++.....
T Consensus 54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 588899999999999876 4488899999999999999999999999999986 67788898888888889999988888
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHH------HHHHHhcCChhhH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN-IKPNVVTYTSV------IRGFCYAKDWNEA 153 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~a 153 (487)
-....+.. +.....|..++.+..-.|+...|..+++...+.. ..|+...+... .....+.|.+++|
T Consensus 132 r~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 132 RNQLLQLR-------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred HHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 88887765 5667889999999999999999999999988764 24565555433 2344677888888
Q ss_pred HHHHHHHHHcCCCCChhh-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-cCCCHhHHH-HHHHHH
Q 011362 154 KRLFIEMMDQGVQPNVVT-FNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC-LTGRVNHAK-ELFVSM 230 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~ 230 (487)
.+.+...... +. |... -..-...+.+.+++++|..++..++.. .||..-|...+..+. ...+.-++. .+|...
T Consensus 205 le~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 205 LEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888765443 11 2222 234456778999999999999999987 456655555444433 333333444 555554
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC--
Q 011362 231 ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR----NG-- 304 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-- 304 (487)
.+. .+........=+....-..-.+....++......|+++ ++..+...|-.....+-..++.-.+.. .+
T Consensus 281 s~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 281 SEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred hhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 433 11111111111111112223344455666666666653 233333333222221111111111111 00
Q ss_pred --------CCCcH--HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 011362 305 --------VAADT--WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374 (487)
Q Consensus 305 --------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (487)
-+|.. +++..++..+-+.|+++.|..+++....+. |.-+..|..=.+.+...|++++|..++.+..+..
T Consensus 357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 13333 455567778888899999999998888653 3334455556677888899999999998888764
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--C----HHHHHHH--HHHHHhcCChhHHHHHHHHH
Q 011362 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP--N----VITFDML--IRGFIRINEPSKVIELLHKM 440 (487)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 440 (487)
.||...-.--+.-..+.++.++|.++.....+.|... + .-.|-.+ ..+|.+.|++..|++-+...
T Consensus 436 -~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 436 -TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred -chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 4555444455556677888899988888887765310 0 1122222 34567777776666544443
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.1e-11 Score=102.30 Aligned_cols=422 Identities=13% Similarity=0.116 Sum_probs=268.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+|+|++|+..|..+.+.. .++...+-.|.-++.-.|.+.+|..+-.+.. .++-....++....+.++-++-..+
T Consensus 70 LgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred hccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHH
Confidence 589999999999998875 5677778888888889999999999876643 3334445556666677776666655
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhcCChhhHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS-VIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~ 159 (487)
-+.+.. +..--..|.....-.-.+++|+++|.+....+ |.-...+. +..+|.+..-++-+.++++-
T Consensus 144 h~~LqD-----------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 144 HSSLQD-----------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHhh-----------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 555433 12333344444444456788888888877652 33334443 34455666667777777776
Q ss_pred HHHcCCCCChhhHHHHHHHHHh--CCC---------------------------------hHHHHHHHHHHHHCCCCCCH
Q 011362 160 MMDQGVQPNVVTFNVIMDELCK--NGK---------------------------------MDEASRLLDLMIQHGVRPDA 204 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~--~~~---------------------------------~~~a~~~~~~~~~~~~~~~~ 204 (487)
..+. ++.++...|..+....+ .|+ -+.|++++--+.+. -+
T Consensus 211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IP 285 (557)
T KOG3785|consen 211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IP 285 (557)
T ss_pred HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----Ch
Confidence 6654 22233333332222221 111 12333333333222 12
Q ss_pred HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC-------CHhHHHHHHHHHHHCCCccCh-hh
Q 011362 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNK-------EIEGALSLYSEMLSKGIKPDV-VI 276 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~-~~ 276 (487)
..-..|+--|.+.+++++|..+.+++. |.++.-|..-.-.+...| ...-|.+.|+-+-+++..-|. ..
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 334456667889999999999887765 334443333333333333 345566666655555443332 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK 356 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (487)
...+...+.-..++++++.+++.+...- ..|......+.++++..|.+.+|+++|-.+....++.+..-...|..+|.+
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR 440 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh
Confidence 5566677777889999999999888763 334444556788999999999999999888765555455555677889999
Q ss_pred cCCHHHHHHHHHhccCCCCCCcHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011362 357 SGRLEIALELFRSLPCGVLVPNVVTY-SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIE 435 (487)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (487)
.+.++.|.+++-++-. +.+..+. ..+...|.+.+.+=-|.+.|+.+... .|++..|. |+-.....
T Consensus 441 nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG 506 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAG 506 (557)
T ss_pred cCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHH
Confidence 9999999998876653 2233333 34456788999999999999988874 67777774 33334455
Q ss_pred HHHHHHhcCCCC-CHHHHHHHHHHHHhcccc
Q 011362 436 LLHKMKEINVMP-DASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 436 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 465 (487)
+|..+....-.| .....+-++..+...++.
T Consensus 507 ~f~~l~~~~~~~~p~~~~rEVvhllr~~~ns 537 (557)
T KOG3785|consen 507 LFRQLANHKTDPIPISQMREVVHLLRMKPNS 537 (557)
T ss_pred HHHHHHcCCCCCCchhHHHHHHHHHHhCCCc
Confidence 666666544333 345667777777776665
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9.7e-12 Score=108.81 Aligned_cols=286 Identities=14% Similarity=0.091 Sum_probs=226.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011362 131 KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTL 210 (487)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 210 (487)
.-+.........-+...+++.+..++.+...+. .++....+..-+.++...|+..+-..+=..+.+. .+..+.+|..+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 335666666777788899999999999999876 3456666777777999999988888888888876 44577889999
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (487)
.--|...|+..+|.+.|.+....+ +.-...|..+...|.-.+..+.|...|....+.- +-...-+..+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 999999999999999999987765 2334578999999999999999999998877641 11222233445567889999
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC------CCChHhHHHHHHHHHhcCCHHHHH
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC------EFDIRAYNSLIDGLCKSGRLEIAL 364 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~ 364 (487)
+.|.++|.+..... +.|+..++.+.......+.+.+|..+|+.....-. ..-..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999998763 56677788887777788999999999988762110 123456899999999999999999
Q ss_pred HHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011362 365 ELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGF 424 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (487)
..+++.+... +.+..++.+++-.|...|+++.|...|.+.+. +.|+..+-..++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999988763 66889999999999999999999999999987 567776666665543
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=1.3e-12 Score=123.56 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=192.6
Q ss_pred CCCHHhHHHHHHHHH-----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 011362 20 TPDAVTFTSLIKGLC-----AESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC---------RTSHTIVALNLFEEMA 85 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~ 85 (487)
+.+...|...+++.. ..+++++|+..|+++.+.. +.+...|..+..++. ..+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 456666666555532 2356899999999999874 334556666655443 2345889999999999
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 165 (487)
+.+ |.+...+..+..++...|++++|...|++..+.+ +.+...+..+..++...|++++|...++++.+..+
T Consensus 332 ~ld-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELD-------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 987 6778889999999999999999999999998874 34677888899999999999999999999988754
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHH
Q 011362 166 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSIL 245 (487)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 245 (487)
. +...+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...+.++.... +.+....+.+
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l 481 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLL 481 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHH
Confidence 3 2223334455567789999999999998766433355567778888899999999999998876552 3344455666
Q ss_pred HHHHHccCCHhHHHHHHHHHHHCC-CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011362 246 INGYCKNKEIEGALSLYSEMLSKG-IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG 304 (487)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (487)
...|...| +.|...++.+.+.. ..+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66777777 47777777766531 11221222 44455566777766665 7776653
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=1.3e-09 Score=97.31 Aligned_cols=461 Identities=10% Similarity=0.085 Sum_probs=294.2
Q ss_pred CccchHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
|+..+.+..|++++..-+. ....+|...+......|-++-++.++++.++. ++..-.-.+..++..++.++|.+.
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHH
Confidence 4556677788888776421 23557888888888888888999999998864 344466677888899999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChhhHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD---KAKELLLQMKDKNIKPN--VVTYTSVIRGFCYAKDWNEAKR 155 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 155 (487)
+..+...+.-.+...+.+...|..+....++..+.- ....+++.+... -+| ...|.+|...|.+.|.+++|.+
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 998876653333334566777887777776654433 333444444433 223 3468999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhC----------------CC------hHHHHHHHHHHHHCC-----------CCC
Q 011362 156 LFIEMMDQGVQPNVVTFNVIMDELCKN----------------GK------MDEASRLLDLMIQHG-----------VRP 202 (487)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~~~~~~~~-----------~~~ 202 (487)
+|++.+..- .+..-|..+..+|+.- ++ ++-...-|+.+.... -+.
T Consensus 270 vyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 999987752 2333344444444321 11 122223333333221 111
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC------CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC---
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH------TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--- 273 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 273 (487)
++..|..-.. ...|+..+-...+.++...- .| -...|..+...|-..|+.+.|..+|++......+.-
T Consensus 348 nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 2333332222 23456667777777765431 12 224578889999999999999999999887644321
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CC------cHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 011362 274 VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGV-----------AA------DTWTYRTFIDGLCKNGYIVEAVELFHTLR 336 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 336 (487)
..+|......-.++.+++.|++++.......- ++ +...+...++.....|-++....+|+++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23555556666678889999998887654211 11 11234445555566788888999999998
Q ss_pred HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH-HHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCC
Q 011362 337 ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV-VTYSIMIGGLCN---DGQMDKARDLFLDMEENAVVP 412 (487)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 412 (487)
+..+ .++.........+..+.-++++.+++++-+..-..|+. ..|+..+..+.+ ...++.|..+|+++++ |.+|
T Consensus 505 dLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 7764 45555555555566777789999999987776445665 578887777654 3468999999999998 5666
Q ss_pred CHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh-------cccccccccccccch
Q 011362 413 NVIT--FDMLIRGFIRINEPSKVIELLHKMKEINVMPDA--SIVSIVVDLLAK-------NEISLNSLPSFTVHE 476 (487)
Q Consensus 413 ~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-------~g~~~~~~~~~~~~~ 476 (487)
...- |......--+.|-...|..+++++... +++.. ..|+.+|.-.+. .+.++++|+..|.+.
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 5432 222233333568888899999997643 34432 455655543221 233377777766543
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.2e-11 Score=116.97 Aligned_cols=271 Identities=14% Similarity=0.006 Sum_probs=187.9
Q ss_pred CCCHHHHHHHHHHH--H---ccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH-------HHhcCChhHHHHHH
Q 011362 55 EPDVFTYTTLVNGL--C---RTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG-------LCKEGFVDKAKELL 122 (487)
Q Consensus 55 ~~~~~~~~~l~~~~--~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~g~~~~a~~~~ 122 (487)
..+...|...+++. . ..+..++|+.+|++..+..+.+ +........+.. +...+++++|...+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-----IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 44555454444432 1 1245679999999999988643 333322222111 12446789999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 011362 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP 202 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 202 (487)
++..+.+ +-+..++..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...++.+.+....
T Consensus 328 ~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~- 404 (553)
T PRK12370 328 IKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT- 404 (553)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 9999874 347788888999999999999999999999987533 5667888889999999999999999999987443
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV 282 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 282 (487)
+...+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...+.++..... .+......+..
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~ 483 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYA 483 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHH
Confidence 33333444555677899999999999987664334566678888899999999999999998766522 23444555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 283 GLFEIHQVERAFKLFDEMQRNGV-AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
.+...| +++...++.+.+... .+.. .......+.-.|+.+.+..+ +++.+.+
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHhccH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 667766 477777777655311 1111 12244445667777777666 7776543
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=2e-10 Score=104.96 Aligned_cols=287 Identities=15% Similarity=0.113 Sum_probs=167.6
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-----cCChH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR-----TSHTI 75 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~ 75 (487)
.|++++|++.++..... +..........+..+.+.|++++|..+|..++..+ +.+..-|..+..+..- ..+.+
T Consensus 17 ~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred CCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHH
Confidence 47777788777775554 33335555667777777888888888888877774 3333334444444311 12456
Q ss_pred HHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 011362 76 VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV-DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAK 154 (487)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 154 (487)
...++++++.... |.......+.-.+..-..+ ..+...+..+...|+| .+|..|-..|.......-..
T Consensus 95 ~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 95 KLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred HHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 6677777776654 2222222222112111122 2344455556666654 34555555555444444444
Q ss_pred HHHHHHHHc----C----------CCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 155 RLFIEMMDQ----G----------VQPNV--VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 155 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
+++...... + -+|+. .++..+...|...|++++|+.+++..+++... .+..|..-.+.+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 455444322 0 12233 23345566677788888888888877776322 3566777777777888
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhH--------HHHHHHHHhcCCH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIH--------NTLFVGLFEIHQV 290 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~ 290 (487)
++.+|.+.++.....+ ..|...-+..+..+.+.|+.++|.+++....+.+..|..... .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888888888777765 456666666777777888888888887777665543222111 2345667777777
Q ss_pred HHHHHHHHHHHH
Q 011362 291 ERAFKLFDEMQR 302 (487)
Q Consensus 291 ~~a~~~~~~~~~ 302 (487)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=9.7e-13 Score=107.05 Aligned_cols=229 Identities=12% Similarity=0.003 Sum_probs=130.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011362 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVI 141 (487)
Q Consensus 62 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 141 (487)
..+..+|.+.|.+.+|.+.|+...+. .|.+++|..|-.+|.+..++..|+.++.+-.+. .+-++....-+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 45566666666666666666665553 355566666666666666666666666655544 232333334455
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHh
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 221 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (487)
+.+-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+++++++++.|+. ++..|..+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 56666666666666666665542 224444444445555566666666666666666655 5556666666666666666
Q ss_pred HHHHHHHHHHHcCCCC--CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011362 222 HAKELFVSMESMGCKH--TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDE 299 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 299 (487)
-++..|.+..+.--.| -...|..+.......||+..|.+.|+-.+.++.. ....++.+...-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 6666665554432112 2334555555555666666666666666554333 444556665556666666666666665
Q ss_pred HHH
Q 011362 300 MQR 302 (487)
Q Consensus 300 ~~~ 302 (487)
...
T Consensus 455 A~s 457 (478)
T KOG1129|consen 455 AKS 457 (478)
T ss_pred hhh
Confidence 554
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=3.2e-10 Score=103.24 Aligned_cols=412 Identities=13% Similarity=0.036 Sum_probs=261.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 18 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
.+..+..+|..+.-++...|++..+.+.|++....- -.....|..+...+...|....|..+++......+ -++
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-----~ps 391 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-----QPS 391 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-----CCC
Confidence 355789999999999999999999999999987542 34556788899999999999999999988766542 133
Q ss_pred chHHHHHHHHHHHh-cCChhHHHHHHHHHHhC--C--CCCCHhhHHHHHHHHHhc-----------CChhhHHHHHHHHH
Q 011362 98 NTVTYTTIIDGLCK-EGFVDKAKELLLQMKDK--N--IKPNVVTYTSVIRGFCYA-----------KDWNEAKRLFIEMM 161 (487)
Q Consensus 98 ~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~ 161 (487)
++..+-..-..|.+ .+..++++++-.++... + -......|..+.-+|... ....++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44455444444443 46677777766666551 1 112344555555555422 22467888888887
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
+.+.. |+.....+.--|+..++.+.|.+..++..+-+...+...|..+.-.+...+++.+|+.+.+.....- +.|...
T Consensus 472 ~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l 549 (799)
T KOG4162|consen 472 QFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVL 549 (799)
T ss_pred hcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhh
Confidence 76543 3444444555778889999999999999988666788999999999999999999999998876531 122222
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHC-----CC-----------------------ccChhhHHHHHHHHHhcCCHHHH
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSK-----GI-----------------------KPDVVIHNTLFVGLFEIHQVERA 293 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-----------------------~~~~~~~~~l~~~~~~~~~~~~a 293 (487)
...-+..-...++.++++.....+... ++ .-...++..+...... +...+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~ 627 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSA 627 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhc
Confidence 222233333466777776665554431 00 0001111111111100 00000
Q ss_pred HHHHHHHHHcCCC--Cc------HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 011362 294 FKLFDEMQRNGVA--AD------TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALE 365 (487)
Q Consensus 294 ~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 365 (487)
..-. .+...... |+ ...+......+.+.+..++|...+.+..... +..+..|......+...|..++|.+
T Consensus 628 ~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 628 GSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred cccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 0000 00000011 11 1233344556667777777777777776543 5566667777777777888888888
Q ss_pred HHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 366 LFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARD--LFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
.|......+ +.++....++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+.+.|+.+.|.+.|.-..+.
T Consensus 706 af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 706 AFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 887776643 3345677778888888887766666 78888776533 6778888888888888888888888777653
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4.9e-10 Score=98.91 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=82.7
Q ss_pred CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHH--------hccCCCCCCcHHHHHHHHHHHHccCCH
Q 011362 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFR--------SLPCGVLVPNVVTYSIMIGGLCNDGQM 395 (487)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (487)
.+..+..++...-+........+.-..+......|+++.|.+++. .+.+.+..| .+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 466666666666554322234455556666777888888888887 444443333 3444555566666666
Q ss_pred HHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 396 DKARDLFLDMEEN--AVVPN----VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 396 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
+.|..++.+.+.. .-.+. ..++..++..-.+.|+.++|..+++++.+.+ ++|..+...++.+|++..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 6666666665432 00111 2233344444456788888888888888765 677777777777777644
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=7.4e-12 Score=105.90 Aligned_cols=197 Identities=14% Similarity=0.100 Sum_probs=92.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
.+..+...+...|++++|.+.++++.+.. |.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 34444444444555555555555444432 2334444444444555555555555554444432 123334444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
+...+...|++++|.+.+++....... .....+..+..++...|++++|...++....... .+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcC
Confidence 444445555555555555554432111 1122333444455555555555555555544321 13344445555555555
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
++++|...+++..... +.+...+..++..+...|+.+.|..+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555554441 3334444445555555555555555554443
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=5.4e-09 Score=93.45 Aligned_cols=443 Identities=14% Similarity=0.136 Sum_probs=278.3
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHccCChH--
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFG------CEPDVFTYTTLVNGLCRTSHTI-- 75 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~-- 75 (487)
.+-++.+|++-++.. +..-+-.+..+...+++++|.+.+...+... .+.+...|..+.....+.-+.-
T Consensus 154 Pets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 154 PETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 456888999998863 3335667888899999999999998876541 2445556766666665554332
Q ss_pred -HHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC------
Q 011362 76 -VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK------ 148 (487)
Q Consensus 76 -~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 148 (487)
....+++.+..+- ...-...|+.|...|.+.|.+++|.++|++..+.- .++.-|..+...|+.-.
T Consensus 230 lnvdaiiR~gi~rf------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~ 301 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRF------TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAA 301 (835)
T ss_pred cCHHHHHHhhcccC------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHH
Confidence 2344555555443 12224678999999999999999999999987752 24444555555544211
Q ss_pred ----------------ChhhHHHHHHHHHHcCC-----------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 011362 149 ----------------DWNEAKRLFIEMMDQGV-----------QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 149 ----------------~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
+++-....|+.++.... +.+...|..-+ -...|+..+....+.++.+. +.
T Consensus 302 ~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vd 378 (835)
T KOG2047|consen 302 KMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VD 378 (835)
T ss_pred HHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cC
Confidence 12233334444443311 11222222222 22356677777888877764 22
Q ss_pred C------CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc-
Q 011362 202 P------DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIK- 271 (487)
Q Consensus 202 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 271 (487)
| -...|..+...|-..|+.+.|..+|++......+.- ..+|.....+=.+..+++.|+++++......-.
T Consensus 379 P~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~ 458 (835)
T KOG2047|consen 379 PKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNP 458 (835)
T ss_pred cccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCch
Confidence 2 235688889999999999999999999987654332 344555566667788999999998877543111
Q ss_pred ----------------cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 011362 272 ----------------PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTL 335 (487)
Q Consensus 272 ----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 335 (487)
.+...|..++..-...|-++....+++++.+..+. ++.........+.....++++.++|++-
T Consensus 459 ~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 459 ELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred hhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 12345566666666788899999999999887543 4444444444556677789999999886
Q ss_pred HHcCCCCCh-HhHHHHHHHHHh---cCCHHHHHHHHHhccCCCCCCcHHHHHHHH--HHHHccCCHHHHHHHHHHHHhCC
Q 011362 336 RILKCEFDI-RAYNSLIDGLCK---SGRLEIALELFRSLPCGVLVPNVVTYSIMI--GGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 336 ~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
+..-..|++ ..|+..+.-+.+ ...++.|..+|++.++ +++|...-+-.++ ..--..|-...|+.+++++...
T Consensus 538 I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~- 615 (835)
T KOG2047|consen 538 ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA- 615 (835)
T ss_pred CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-
Confidence 654334443 456766665543 3468999999999998 5566543222222 2223457788888898887654
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH---HHHHhccccc
Q 011362 410 VVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVV---DLLAKNEISL 466 (487)
Q Consensus 410 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~ 466 (487)
+++. ...|+.+|.-....=.+.....+|+++.+. -|+...-...+ +.=++.|...
T Consensus 616 v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 616 VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHH
Confidence 3333 245666665444443455566777777763 45554444433 2334455543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.7e-12 Score=105.73 Aligned_cols=231 Identities=13% Similarity=0.031 Sum_probs=190.8
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHh
Q 011362 207 YNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFE 286 (487)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (487)
-+.+.++|.+.|.+.+|.+.++...+. .|.+.+|..|-..|.+..+++.|+.++.+.++. ++.++.......+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356788999999999999999888776 567778899999999999999999999988876 44466666677788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 011362 287 IHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALEL 366 (487)
Q Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (487)
.++.++|.++++...+.. +.+.+....+...|.-.++++-|+.+|+++...| -.++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999988874 5567777778888888899999999999999988 56888899999899999999999988
Q ss_pred HHhccCCCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 367 FRSLPCGVLVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 367 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
|++....-..|+ ..+|..+.......|++.-|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++.+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888765433344 467888888888899999999999988876432 5678888888888999999999999888763
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=1.3e-09 Score=99.34 Aligned_cols=125 Identities=16% Similarity=0.085 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP-NVITFDMLIRGFI 425 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 425 (487)
|......+.+.+..++|...+.+..... +-....|......+...|...+|...|...... .| ++.+..++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 4455667778888899988888777642 445667777778888999999999999999875 34 4678889999999
Q ss_pred hcCChhHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 011362 426 RINEPSKVIE--LLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 475 (487)
Q Consensus 426 ~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 475 (487)
+.|+..-|.. ++..+++.+ +.++..|..+...+.+.|+..++.+.|.-.
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9998888877 999999977 667899999999999999997777666443
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1e-09 Score=92.76 Aligned_cols=270 Identities=14% Similarity=0.025 Sum_probs=168.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHH
Q 011362 166 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSIL 245 (487)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 245 (487)
+-+......+..++...|+..+|+..|+.....+.- +........-.+.+.|+.++...+...+.... +.+...|..-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 334555566666667777777777777666544211 22222333334455666666666655555432 2233334444
Q ss_pred HHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCH
Q 011362 246 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYI 325 (487)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (487)
+......++++.|+.+-++.+..+.. +...+..-...+...+++++|.-.|+...... +.+..+|..++.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 44445566777777777666664332 44445445556667777777777777766542 34566777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCChHhHHHHH-HHHH-hcCCHHHHHHHHHhccCCCCCCcH-HHHHHHHHHHHccCCHHHHHHHH
Q 011362 326 VEAVELFHTLRILKCEFDIRAYNSLI-DGLC-KSGRLEIALELFRSLPCGVLVPNV-VTYSIMIGGLCNDGQMDKARDLF 402 (487)
Q Consensus 326 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 402 (487)
.+|...-+...+. ++.+..++..+. ..+. ...--++|.+++++.... .|+. ...+.+...+...|+.+.++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7777666655543 244555554442 2222 222346777777776664 4543 45667777788888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
++... ..||....+.|...+...+.+++|.+.|..++..+
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88877 35788888888888888888888988888888754
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=4e-11 Score=101.38 Aligned_cols=199 Identities=15% Similarity=0.074 Sum_probs=97.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------PNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHH
Confidence 3344455555555555555555555555442 2334444455555555555555555555555443 3334445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
..+...+...|++++|.+.+++...... +.....+..+..++...|++++|...+.+....... +...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 5555555555555555555555544211 112234444455555555555555555555443211 23344445555555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
.|++++|...+++.... .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555444 22233444444455555555555555544443
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.6e-08 Score=85.62 Aligned_cols=270 Identities=12% Similarity=0.051 Sum_probs=186.6
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011362 130 IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYN 208 (487)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 208 (487)
++-|+.....+..++...|+..+|+..|++.... .|+ ........-.+...|+.++...+...+.... .-+...|.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 4557777788888888888888888888887654 222 2223333445567788888777777766542 12334444
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcC
Q 011362 209 TLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIH 288 (487)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (487)
.-+......+++..|+.+-++..+.+ +.+...+-.-...+...++++.|.-.|+......+ .+...|..++.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence 44555566777888888888877665 44555666666777788888888888888776532 36678888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHH-HHHH-hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 011362 289 QVERAFKLFDEMQRNGVAADTWTYRTFI-DGLC-KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALEL 366 (487)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (487)
.+.+|...-+...+. .+.+..++..+. ..+. ...--++|..++++..... |.-....+.+...+...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHH
Confidence 888888777666554 344555555553 2222 2233567888888777653 33345667777778888888888888
Q ss_pred HHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 367 FRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
++..... .||....+.|...+...+.+++|+..|..+...
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8877764 677778888888888888888888888888774
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=4.4e-10 Score=102.74 Aligned_cols=294 Identities=16% Similarity=0.120 Sum_probs=213.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+ |.+..-|..+..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHH
Confidence 345678999999999999886544 33444556688899999999999999999999987 6677777777777
Q ss_pred HHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh-hHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 109 LCKE-----GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWN-EAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 109 ~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
.... .+.+...++|+++...- |.......+.-.+.....|. .+..++..+...|++ .+|..+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 6333 25677888999887652 44444444433333333443 344566666777765 3566666666655
Q ss_pred CChHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 011362 183 GKMDEASRLLDLMIQH----G----------VRPDA--FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILI 246 (487)
Q Consensus 183 ~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 246 (487)
.+..-..+++...... + -+|+. .++..+...|...|++++|++++++..++. |..+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5555555555554432 1 12343 355667888999999999999999999885 44578888999
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--------HhHHHHHHH
Q 011362 247 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT--------WTYRTFIDG 318 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~ 318 (487)
+.+-..|++++|.+.++.....+.. |...-+..+..+.+.|+.++|..++....+.+..|.. +.......+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987655 6667777888889999999999999988776543322 223455678
Q ss_pred HHhCCCHhHHHHHHHHHHH
Q 011362 319 LCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~ 337 (487)
|.+.|++..|+..|..+.+
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999887777653
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.47 E-value=1.6e-10 Score=89.81 Aligned_cols=199 Identities=12% Similarity=0.003 Sum_probs=142.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
+...|.-.|...|++..|..-++++++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. |.+..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhh
Confidence 45556667778888888888888887764 4455677777777888888888888888887765 566777778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKN-IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 183 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (487)
....+|..|++++|...|++....- ..-...+|..+.-+..+.|+++.|...|++..+.... ...+...+.+...+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 8888888888888888887776541 2223456777777777888888888888887776433 3445666777777788
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 184 KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 184 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
++..|..+++.....+. ++....-..|+.-.+.|+.+.+.+.=..+...
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888877777776654 67777777777777777777776665555543
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=2.1e-10 Score=99.35 Aligned_cols=220 Identities=11% Similarity=0.049 Sum_probs=118.7
Q ss_pred cCCHHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 36 ESRIMEAAALFTKLRVFGC-EP--DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
.+..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+.. |.+...|+.+...+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQA 111 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHC
Confidence 3455566666666654321 11 12345566666667777777777777766654 45566677777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 192 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 192 (487)
|+++.|.+.|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...+++++|...|
T Consensus 112 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 112 GNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777777777766542 2245566666666666777777777777666543 22211122222233455667777776
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc---CC---CCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 193 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM---GC---KHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
....... .++...+ .+. ....|+...+ ..+..+.+. .. +.....|..+...+.+.|++++|...|++..
T Consensus 189 ~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5544321 2222111 112 2223333332 233333211 00 1223466777777777777777777777777
Q ss_pred HCCC
Q 011362 267 SKGI 270 (487)
Q Consensus 267 ~~~~ 270 (487)
..++
T Consensus 264 ~~~~ 267 (296)
T PRK11189 264 ANNV 267 (296)
T ss_pred HhCC
Confidence 6543
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=1.2e-10 Score=105.03 Aligned_cols=244 Identities=19% Similarity=0.169 Sum_probs=167.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCC-CCccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVF-----G-CEPDVFT-YTTLVNGLCRTSHTIVALNLFEEMANGNG-EFGVV 94 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ 94 (487)
..+...+...|...|+++.|..++++.++. | ..|...+ .+.+...|...+++.+|..+|+++..... .+|..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 555666999999999999999999998876 1 1344443 34578899999999999999998876431 12222
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHHhcCChhhHHHHHHHHHHc---C
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-----NI-KPNV-VTYTSVIRGFCYAKDWNEAKRLFIEMMDQ---G 164 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 164 (487)
.+.-..+++.|...|.+.|++++|...++...+. |. .|.+ ..++.++..+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 3344567888889999999999988888776532 11 1222 23566777788888999988888876542 1
Q ss_pred CCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC----C---CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 165 VQP----NVVTFNVIMDELCKNGKMDEASRLLDLMIQHG----V---RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 165 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
+.+ -..+++.+...|...|++++|.++++.++... . .-....++.+...|.+.+.+.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 23467778888888888888888887776531 1 112345666777777777777777777665332
Q ss_pred ------CCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 234 ------GCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 234 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
+.+....+|..|...|.+.|+++.|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 122334567777777777777777777766655
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4e-09 Score=92.41 Aligned_cols=390 Identities=16% Similarity=0.130 Sum_probs=245.4
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|+++.|+..|-..+..++ +|-..|..-..+|...|++++|++=-.+-.+. .|+ +..|.....++...|++++|+.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred cccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHH
Confidence 4899999999999999974 48888888899999999999999877777765 444 4579999999999999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHH---HHHHHHHHhC---CCCCCHhhHHHHHHHHHhc------
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKA---KELLLQMKDK---NIKPNVVTYTSVIRGFCYA------ 147 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------ 147 (487)
.|.+-++.. +.+...+..+..++......... -.++..+... ........|..++..+-+.
T Consensus 92 ay~~GL~~d-------~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 92 AYSEGLEKD-------PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHhhcC-------CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999876 67778888888877221000000 0011111100 0000111222222221110
Q ss_pred ----CChhhHHHHHHHH-----HHcC-------CCC----------------------ChhhHHHHHHHHHhCCChHHHH
Q 011362 148 ----KDWNEAKRLFIEM-----MDQG-------VQP----------------------NVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 148 ----~~~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
..+.++.-.+... ...+ ..| -..-...+.++..+..++..++
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 1111121111100 0000 111 0112345778888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH-------HHHHHHHHccCCHhHHHHHH
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY-------SILINGYCKNKEIEGALSLY 262 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~ 262 (487)
+.+....... -+..-++....++...|.+......-....+.|. .....| ..+..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9999888764 3566667777788888888777776666655542 122222 23444667778899999999
Q ss_pred HHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC
Q 011362 263 SEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD-TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCE 341 (487)
Q Consensus 263 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (487)
.+.+.....|+. ..+....+++........-. .|. ..-...-...+.+.|++..|+..|.++++.. |
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 987765433332 22333344554444433332 222 1222333566777888888888888888776 6
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011362 342 FDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFD 418 (487)
Q Consensus 342 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 418 (487)
.|...|....-+|.+.|.+..|+.-.+..++.+ ++....|..-+.++....+++.|.+.|++.++.. |+..-+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~ 463 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAI 463 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHH
Confidence 777888888888888888888888777777653 4445566666667777778888888888887753 4444333
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=2.4e-10 Score=103.08 Aligned_cols=243 Identities=20% Similarity=0.175 Sum_probs=126.4
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC-CCChhh-HHHHHHHHHhCCChHHHHHHHHHHHHC-----CC-
Q 011362 134 VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ-----GV-QPNVVT-FNVIMDELCKNGKMDEASRLLDLMIQH-----GV- 200 (487)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 200 (487)
..+...+...|...|++++|+.+++..++. |. .|...+ .+.+...|...+++.+|..+|+.+... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777777777777777777766553 10 112111 122444555555555555555555432 10
Q ss_pred -CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC-CccCh-hhH
Q 011362 201 -RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPDV-VIH 277 (487)
Q Consensus 201 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~~~ 277 (487)
+.-..+++.|..+|.+.|++++|...++...+. +++ ..+ ..|.+ ..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~--~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEK--LLGASHPEVAAQL 328 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHH--hhccChHHHHHHH
Confidence 111234444455555555555555544443221 000 000 01111 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC----C---CCC
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRN---GVAA----DTWTYRTFIDGLCKNGYIVEAVELFHTLRILK----C---EFD 343 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~ 343 (487)
..+...+...+++++|..++....+. -+.+ -..++..+...|...|++++|.+++++++... . .-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 33444455555555555555443221 0111 13566777777777777777777777665321 1 122
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhccC----CC-CCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 344 IRAYNSLIDGLCKSGRLEIALELFRSLPC----GV-LVPN-VVTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
...++.+...|.+.+++.+|.++|.+... .| -.|+ ..+|..|..+|...|+++.|.++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566777777777777777776665432 11 1223 3577778888888888888888777665
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=2.4e-10 Score=105.53 Aligned_cols=251 Identities=15% Similarity=0.195 Sum_probs=140.7
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
++-.+...| +.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~g------i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 12 FLALHEISG------ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred HHHHHHHhc------CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----
Confidence 444555555 6888999999999999999999888 8888888777778889999999988888888776
Q ss_pred HHHcCCCCChhhHHHHHHHHHhCCChHH---HHHHHHHHH----HCCCCCCHHHHHH---------------HHHHHHcC
Q 011362 160 MMDQGVQPNVVTFNVIMDELCKNGKMDE---ASRLLDLMI----QHGVRPDAFTYNT---------------LLDGFCLT 217 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~~---------------l~~~~~~~ 217 (487)
.|.+.+|..|..+|...||... +.+.+..+. ..|+. ....+.. .+......
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLE 152 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHH
Confidence 5788899999999999998654 222222221 11211 1111111 11111222
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-cCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 011362 218 GRVNHAKELFVSMESMGCKHTVFSYSILINGYCK-NKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL 296 (487)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (487)
|-++.+++++..+..... ..+... +++-+.. ...+++-........+ .|++.++..++......|+.+.|..+
T Consensus 153 glwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 233333333322211100 000000 1222111 1122222222222222 35556666666666666666666666
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 011362 297 FDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG 358 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 358 (487)
+..|.+.|.+.+.+-|..++-+ .++...+..+++-|...|+.|+..|+...+..+...|
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 6666666665555544444433 5555555666666666666666666655555554433
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=2.9e-09 Score=86.08 Aligned_cols=326 Identities=15% Similarity=0.120 Sum_probs=200.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH-
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT- 104 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (487)
+.+.+..+.+..++.+|++++..-.++. +.+......+..+|....++..|-..++++.... |...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--------P~~~qYrlY 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--------PELEQYRLY 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------hHHHHHHHH
Confidence 5666777778888999999888877764 3366677788888888889999999999888753 44444433
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVV--TYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
-...+.+.+.+..|+.+...|... |+.. ....-.....+.+++..+..+.++....| +..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 356777888888888888877653 2221 11111222346778888888887765332 444445555556788
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH-----------------------
Q 011362 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV----------------------- 239 (487)
Q Consensus 183 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------- 239 (487)
|+++.|.+-|+...+-+--.....|+.. -+..+.|+++.|++...++.+.|+...+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 8899999888887775433344555543 4556778888888888888776543211
Q ss_pred -----hhHHHHHHHHHccCCHhHHHHHHHHHHHC-CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 011362 240 -----FSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYR 313 (487)
Q Consensus 240 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 313 (487)
..++.-...+.+.++++.|.+.+..|..+ ....|+.|...+.-.- ..+++.....-+.-+...+. -...|+.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHH
Confidence 11233333456778888888887777543 2234555554443221 23334444444555555433 3456788
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCC-CChHhHHHHHHHHH-hcCCHHHHHHHHHhc
Q 011362 314 TFIDGLCKNGYIVEAVELFHTLRILKCE-FDIRAYNSLIDGLC-KSGRLEIALELFRSL 370 (487)
Q Consensus 314 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 370 (487)
.++-.||+..-++-|-.++.+-...... .+...|+ |+.++. ..-.+++|.+-+..+
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888888888887777553221111 1223333 333332 344566666555443
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=1.8e-09 Score=99.98 Aligned_cols=274 Identities=18% Similarity=0.181 Sum_probs=173.1
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 10 VLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
++..+...|+.|+.++|.++|.-|+..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455566667777777777777777777777666 6666666655556666666666666666655443
Q ss_pred CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH-HcCCCCC
Q 011362 90 EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM-DQGVQPN 168 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ 168 (487)
.|.+++|..|..+|.+.||+.. |+...+ -...+...+...|.-.....++..+. ..+.-||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 2456677777777777777655 222221 11223333444444444444443321 1122333
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILING 248 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (487)
.. ..+......|-++.+++++..+...... . .+..+++-+..... -..++.....+..-.+++.+|..++.+
T Consensus 142 a~---n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 142 AE---NAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 33 2344445566667777766554322111 1 11112444443332 223333333332225899999999999
Q ss_pred HHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC
Q 011362 249 YCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY 324 (487)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (487)
-...|+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+...|.
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999999999999888877777655 78888899999999999999999999998888877655
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=2.6e-09 Score=92.62 Aligned_cols=222 Identities=13% Similarity=-0.026 Sum_probs=148.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
.+..+.++.-+.++....+.. .+.....|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~---~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT---DEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred chHHHHHHHHHHHHHccccCC---cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 346677777777777643100 11224567788888888999999999998888764 34678888889999999999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
++|...|++..+..+. +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.+.
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999998876433 45667778888888899999999998888763 33222222233345667888998888665
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC---CC--c-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011362 231 ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK---GI--K-PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG 304 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (487)
.... +++...+ .+. ....|+...+ ..+..+... .+ . .....|..+...+...|++++|...|++..+.+
T Consensus 192 ~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5332 2332222 222 2334555443 244444321 11 1 123578888888889999999999999888865
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=3.8e-09 Score=82.35 Aligned_cols=196 Identities=12% Similarity=0.015 Sum_probs=105.7
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhC
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKN 322 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (487)
..+.-.|...|++..|..-+++.++.++. +..++..+...|.+.|+.+.|.+.|++..+.. +-+..+.+.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 34444555555555555555555554322 34455555555555555555555555555542 23344555555555666
Q ss_pred CCHhHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 323 GYIVEAVELFHTLRILK-CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 323 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
|++++|...|+...... ......+|..+..+..+.|+++.|...|++.++.. +....+...+.......|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666665555321 11223455555555556666666666666655542 22334455555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
++.....+. ++..++...|+.-.+.|+.+.+.+.=.++..
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666655543 5555555555655666666555554444443
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1e-07 Score=83.80 Aligned_cols=406 Identities=12% Similarity=0.041 Sum_probs=264.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
..+.+..|+++.|+..|.+.+... +++...|..-..+|+..|++++|++=-.+..+.. |.-+..|.....++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------PDWAKGYSRKGAAL 80 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------CchhhHHHHhHHHH
Confidence 456678999999999999999886 5588888889999999999999999888887765 45578999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHH---HHHHHHHHc---CCCCChhhHHHHHHHH----
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAK---RLFIEMMDQ---GVQPNVVTFNVIMDEL---- 179 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~---- 179 (487)
.-.|++++|+..|.+-++.. +.+...+..+..++.......+.. .++..+... ........|..++..+
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999988763 335556666766662110000000 001110000 0000011122222111
Q ss_pred ------HhCCChHHHHHHHHHH-----HHC-------CCCC------------C----------HHHHHHHHHHHHcCCC
Q 011362 180 ------CKNGKMDEASRLLDLM-----IQH-------GVRP------------D----------AFTYNTLLDGFCLTGR 219 (487)
Q Consensus 180 ------~~~~~~~~a~~~~~~~-----~~~-------~~~~------------~----------~~~~~~l~~~~~~~~~ 219 (487)
..-..+..+...+... ... +..| | ..-...+..+..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 1101111111111100 000 0011 0 1124567888889999
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc--C----hhhHHHHHHHHHhcCCHHHH
Q 011362 220 VNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP--D----VVIHNTLFVGLFEIHQVERA 293 (487)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a 293 (487)
+..|.+.+....... .+..-++....+|...|.+..+........+.|... + ...+..+..++.+.++++.+
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 999999999988775 456667778888999998888887777766654321 1 11222234466677889999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 294 FKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
...|.+.+.....|+. ..+....+++........-.+... ..-.-.-...+.+.|++..|...|.+++..
T Consensus 318 i~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 9999987765444433 233444555555555544333222 111222256678999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHH
Q 011362 374 VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA-SIV 452 (487)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 452 (487)
. +.|...|..-.-+|.+.|.+..|+.-.+..++.. ++....|..=..++....+++.|.+.|.+.++.+ |+. ...
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~ 463 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAI 463 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHH
Confidence 5 6678899999999999999999999999888863 2234556666667778889999999999999865 544 444
Q ss_pred HHHHHHHH
Q 011362 453 SIVVDLLA 460 (487)
Q Consensus 453 ~~l~~~~~ 460 (487)
..+.++..
T Consensus 464 ~~~~rc~~ 471 (539)
T KOG0548|consen 464 DGYRRCVE 471 (539)
T ss_pred HHHHHHHH
Confidence 44444443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=3.1e-08 Score=89.44 Aligned_cols=306 Identities=10% Similarity=-0.011 Sum_probs=161.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC-EPDV-FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
...|..+...+...|+.+.+...+.+..+... .++. .........+...|++++|.+.++++.+.. |.+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~ 78 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-------PRDLL 78 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHH
Confidence 45566666666677777776666666554421 1121 122223344566777888888777777654 44444
Q ss_pred HHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 101 TYTTIIDGLC----KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 101 ~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
.+.. ...+. ..+..+.+.+.++... ...+........+...+...|++++|...+++..+..+. +...+..+.
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la 155 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVA 155 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 4442 22222 2344444555444311 111222334445556677777888888888877775422 455566677
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-CCCHhhH-H--HHHHHH
Q 011362 177 DELCKNGKMDEASRLLDLMIQHGV-RPDA--FTYNTLLDGFCLTGRVNHAKELFVSMESMGC-KHTVFSY-S--ILINGY 249 (487)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~ 249 (487)
..+...|++++|...++....... .++. ..+..+...+...|++++|..++++...... .+..... . .++..+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 777778888888887777665422 1222 2344566777777888888888777653321 1111111 1 223333
Q ss_pred HccCCHhHHHHH--HHHHHHCCCc--cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------C--cHHhHHHHHH
Q 011362 250 CKNKEIEGALSL--YSEMLSKGIK--PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA------A--DTWTYRTFID 317 (487)
Q Consensus 250 ~~~~~~~~a~~~--~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~ 317 (487)
...|....+..+ +......... ...........++...|+.+.|...+..+...... . ..........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 334433322222 1111111101 11111224555566777788888877776542211 1 1222223333
Q ss_pred HHHhCCCHhHHHHHHHHHHHc
Q 011362 318 GLCKNGYIVEAVELFHTLRIL 338 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~ 338 (487)
++...|+.++|.+.+......
T Consensus 316 ~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 316 YAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 456788888888888777643
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=6.9e-08 Score=87.20 Aligned_cols=305 Identities=14% Similarity=0.048 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN-TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
...+..+...+...|+.+.+.+.+....+..+. ..+ ..........+...|++++|.+.+++..+.. +.+...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 345666666666777777777777666654421 111 1222333445567788888888888877652 334444
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011362 137 YTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLL 211 (487)
Q Consensus 137 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 211 (487)
+.. ...+.. .+....+.+.+... ....|+ ......+...+...|++++|...++...+.. +.+...+..+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la 155 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVA 155 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 442 222222 34444444444431 111222 2333445567778888888888888888764 23566677778
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHccCCHhHHHHHHHHHHHCCC-ccChhhH-H--HHHHHH
Q 011362 212 DGFCLTGRVNHAKELFVSMESMGC-KHTV--FSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIH-N--TLFVGL 284 (487)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~ 284 (487)
..+...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... . .++.-+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 888888888888888887766431 1222 2355677788888888888888888754322 1111111 1 222223
Q ss_pred HhcCCHHHHHHH--H-HHHHHcCC-CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC------C--ChHhHHHHHH
Q 011362 285 FEIHQVERAFKL--F-DEMQRNGV-AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCE------F--DIRAYNSLID 352 (487)
Q Consensus 285 ~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~ 352 (487)
...|....+... + ........ ............++...|+.++|...+..+...... . .+........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 333322222222 1 11111100 111122224556677788888888888777642211 1 1222333334
Q ss_pred HHHhcCCHHHHHHHHHhccC
Q 011362 353 GLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~ 372 (487)
++...|++++|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 45678888888888877654
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.2e-07 Score=84.22 Aligned_cols=386 Identities=12% Similarity=0.021 Sum_probs=214.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
=+..+...|++++|.+...+++..+ +.+...+..-+.+++..+++++|+.+.+.-... ..+...+.-=+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------LVINSFFFEKAYC 88 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------hhcchhhHHHHHH
Confidence 3667788999999999999998876 666777888888889999999999766653321 1111111233445
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH-HHhCCChHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE-LCKNGKMDE 187 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 187 (487)
..+.+..++|+..++-... .+..+...-.+.+.+.+++++|.++|+.+.+.+.. + +...+++ +...+--..
T Consensus 89 ~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhh
Confidence 5678999999999883322 24446777788889999999999999999876433 2 2222211 111111011
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-----C-CCC-H-------hhHHHHHHHHHc
Q 011362 188 ASRLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG-----C-KHT-V-------FSYSILINGYCK 251 (487)
Q Consensus 188 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~-~-------~~~~~l~~~~~~ 251 (487)
+. .+......| +-..+......+...|++.+|++++......+ . ..+ . ..-..+...+..
T Consensus 161 ~~----~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 161 VQ----LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred HH----HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 122222222 12222333455678899999999998873211 0 001 0 122345556778
Q ss_pred cCCHhHHHHHHHHHHHCCCccChhhHHHHHH---HHHhcCCHH--HHHHHHHHHHHcC-------C--CCcHHhHHHHHH
Q 011362 252 NKEIEGALSLYSEMLSKGIKPDVVIHNTLFV---GLFEIHQVE--RAFKLFDEMQRNG-------V--AADTWTYRTFID 317 (487)
Q Consensus 252 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~--~a~~~~~~~~~~~-------~--~~~~~~~~~l~~ 317 (487)
.|+-++|..+|..++..... |......... +.....++- .++..++...... . .--...+...+.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887543 4322211111 111111111 1111111111000 0 000011111111
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHH--hcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLC--KSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQM 395 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (487)
.....+..+.+.++...+... .|. ..+..++.... +...+.++.+++....+....-...+.-..+......|++
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 111233344444443333211 222 23334443332 2235788888888887763222245556667777889999
Q ss_pred HHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 396 DKARDLFL--------DMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 396 ~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
+.|.+++. .+.+.+..|- +...+...+.+.++.+.|..++.+..
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHH
Confidence 99999999 5555444443 44456666777777777777777665
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.2e-11 Score=74.53 Aligned_cols=49 Identities=37% Similarity=0.843 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFI 425 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (487)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=3.2e-08 Score=93.08 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=123.0
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEE 83 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 83 (487)
...|+..|=+.++.++. =...|..|...|....+...|.+.|.++.+.+ ..+..........|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45577777777776522 35668888888888888888999998888765 45666777888888888888888887544
Q ss_pred HHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 84 MANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
..+..+ ...-...|....-.|.+.++...|...|+...+.. |.|...|..++.+|.+.|.+..|.+.|.++...
T Consensus 552 ~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 552 AAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred Hhhhch-----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 443321 01112233345556667778888888888877764 337778888888888888888888888777654
Q ss_pred CCCCChhhHHH--HHHHHHhCCChHHHHHHHHHHHH
Q 011362 164 GVQPNVVTFNV--IMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 164 ~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
.|+. .|.. .....+..|.+.+++..+.....
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3322 2222 22244566777777777766543
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=1.3e-07 Score=78.47 Aligned_cols=302 Identities=12% Similarity=0.061 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
++.-..-+...+...|++..|+..|....+.+ |.+-.++..-...|...|+...|+.-+.+.++. +||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH
Confidence 34445556667777777777777777777654 333444445556677777777777777777664 455332
Q ss_pred H-HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh--h------------hHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 011362 137 Y-TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV--V------------TFNVIMDELCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 137 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
- ..-...+.+.|.+++|..-|+..+++...-.. . .....+..+...|+...|+.....+++.. +
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 1 22334566777788887777777765321110 0 11122334455666666666666666653 2
Q ss_pred CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhh----H
Q 011362 202 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI----H 277 (487)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 277 (487)
-|...+..-..+|...|++..|+.-++...+.. ..+...+..+-..+...|+.+.++..+++.++.+ ||... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHH
Confidence 366666666666667777776666666555543 3344455555556666666666666666666542 33211 1
Q ss_pred HHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCcH---HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChH
Q 011362 278 NTL---------FVGLFEIHQVERAFKLFDEMQRNGVAADT---WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIR 345 (487)
Q Consensus 278 ~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 345 (487)
..+ +......++|.+++...+...+....... ..+..+-.++...+.+.+|++...+++... +.|+.
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 000 01112233444444444444443211111 112223333344445555555555554432 23344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 346 AYNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
++..-..+|.-...++.|+.-|+.+.+
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444445555555555555555555544
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=1.6e-07 Score=77.86 Aligned_cols=305 Identities=11% Similarity=0.016 Sum_probs=221.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
.++.-..-+...+...|++.+|+.-|..+.+.+ +.+-.++..-...|...|+..-|+.=+.+..+.. ||-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--------pDF~ 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--------PDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--------ccHH
Confidence 345555667888889999999999999888643 2233344455567888999999999898888753 4432
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhh------------HHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 011362 101 -TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP--NVVT------------YTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165 (487)
Q Consensus 101 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 165 (487)
.-..-...+.+.|.++.|..-|+.+++..... .... ....+..+.-.|+...|+.....+++..
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~- 185 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ- 185 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-
Confidence 22334556788999999999999988764211 1111 1223445667889999999999998864
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh-h---
Q 011362 166 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF-S--- 241 (487)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--- 241 (487)
+.+...+..-..+|...|++..|+.=++...+... .+..++..+...+...|+.+.++...++..+.+ |+.. .
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHH
Confidence 34777788888899999999999988877766533 366677778888899999999999999888764 3321 1
Q ss_pred HHHH---------HHHHHccCCHhHHHHHHHHHHHCCCccC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 011362 242 YSIL---------INGYCKNKEIEGALSLYSEMLSKGIKPD---VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT 309 (487)
Q Consensus 242 ~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 309 (487)
|..+ +......++|-++++..+..++..+... ...+..+-.++...+++.+|++...++++-. +.|.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv 341 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHH
Confidence 2111 2234456788888888888887644322 2345556667778899999999999998852 3447
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
.++..-..+|.-...++.|+.-|+...+.+
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888999999999999999999998775
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=4e-07 Score=84.24 Aligned_cols=306 Identities=15% Similarity=0.084 Sum_probs=175.3
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------C-CCCCHHHHHHHHHHHHccC
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF--------G-CEPDVFTYTTLVNGLCRTS 72 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-~~~~~~~~~~l~~~~~~~g 72 (487)
|+++.|.+-.+.+. +..+|..+.+.|.+.++++-|.-.+..|... . -.++ ..-..........|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 77888888777654 4567999999999999888776665554322 0 1122 22223344456778
Q ss_pred ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhh
Q 011362 73 HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNE 152 (487)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (487)
..++|+.+|++..+ |..|=..|...|.+++|.++-+.--+.. =..||......+-..+|.+.
T Consensus 815 MlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred hHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 88999888887654 2234445556777777777755422221 12355555555556667777
Q ss_pred HHHHHHHHHH----------cC---------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----------C----
Q 011362 153 AKRLFIEMMD----------QG---------VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH----------G---- 199 (487)
Q Consensus 153 a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~---- 199 (487)
|++.|++... .. -..|...|.-...-+-..|+.+.|+.+|...... |
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchH
Confidence 7766654311 11 0113334444444555667777777777665432 0
Q ss_pred ------CCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc----------CCCCCH---------hh-------------
Q 011362 200 ------VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM----------GCKHTV---------FS------------- 241 (487)
Q Consensus 200 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~---------~~------------- 241 (487)
-.-|......+.+.|...|++.+|..+|.+.... +..... .-
T Consensus 957 Aa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~ 1036 (1416)
T KOG3617|consen 957 AARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG 1036 (1416)
T ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch
Confidence 1124455666788888888888888888765422 111000 00
Q ss_pred -HHHHHHHHHccCCHhHHHHHHH--------HHHHC--CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------
Q 011362 242 -YSILINGYCKNKEIEGALSLYS--------EMLSK--GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR-------- 302 (487)
Q Consensus 242 -~~~l~~~~~~~~~~~~a~~~~~--------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 302 (487)
+..-+..|-+.|.+.+|+++-- +++.. ....|+...+.....++...++++|..++-...+
T Consensus 1037 ~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC 1116 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLC 1116 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223444455544444311 11222 2334667777777888888888888877654321
Q ss_pred --cCC----------------CCcH----HhHHHHHHHHHhCCCHhHHHHHH
Q 011362 303 --NGV----------------AADT----WTYRTFIDGLCKNGYIVEAVELF 332 (487)
Q Consensus 303 --~~~----------------~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 332 (487)
.++ .|+. ..+..+...|.++|.+..|.+-|
T Consensus 1117 ~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1117 KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 111 1222 34566777888888887776554
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=4.9e-11 Score=71.93 Aligned_cols=50 Identities=44% Similarity=0.930 Sum_probs=48.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR 70 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (487)
||+.+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.21 E-value=6.1e-07 Score=91.84 Aligned_cols=339 Identities=13% Similarity=0.034 Sum_probs=211.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC------CC--hhhHHHHHH
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ------PN--VVTFNVIMD 177 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~ 177 (487)
.......|+++.+..+++.+.......+..........+...|+++++..++......-.. +. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3445566777777777766532111112223334455566789999999998877543111 11 111222334
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC---CC--CHhhHHHHHHH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDA----FTYNTLLDGFCLTGRVNHAKELFVSMESMGC---KH--TVFSYSILING 248 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 248 (487)
.+...|++++|...++.....-...+. .....+...+...|++++|...+.+.....- .+ ....+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566899999999999987763111121 2345566677889999999999888764311 11 12344556777
Q ss_pred HHccCCHhHHHHHHHHHHHC----CCc--c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--cHHhHHHHHH
Q 011362 249 YCKNKEIEGALSLYSEMLSK----GIK--P-DVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG--VAA--DTWTYRTFID 317 (487)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 317 (487)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876652 211 1 12233445566777899999999988775431 111 2334445666
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCC-ChHhH-----HHHHHHHHhcCCHHHHHHHHHhccCCCCCCc---HHHHHHHHHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEF-DIRAY-----NSLIDGLCKSGRLEIALELFRSLPCGVLVPN---VVTYSIMIGG 388 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 388 (487)
.+...|++++|...+.......... ....+ ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999988875421111 11111 1122444568899999999877654321111 1123456778
Q ss_pred HHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 389 LCNDGQMDKARDLFLDMEEN----AVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
+...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999988653 32222 2456667778889999999999999998654
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.9e-09 Score=94.11 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=157.1
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++.+|.-.|+.+++.+ |-+..+|..|.......++-..|+..+.+.++.. +.+..+...|...|...|.-..|...+
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77899999999999997 5589999999999999999999999999999985 567778889999999999999999999
Q ss_pred HHHHhCCCCCcccccc--chHHHHHHHHHHHhcCChhHHHHHHHHH-HhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 82 EEMANGNGEFGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELLLQM-KDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
+......+.......+ +...-.. ..+.....+....++|-.+ .+.+..+|+.+...|.-.|.-.|.+++|.+.|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 9987755321111110 0000000 0111111223334444443 333434677777777777777888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSMES 232 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (487)
.++...+. |...||.|...++...+.++|+..|++.++. .|. +.....|...|...|.+++|.+.|-.++.
T Consensus 455 ~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 455 AALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 87775433 5667788888888777888888888877765 333 34555667777778888887777665543
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=7.2e-08 Score=78.28 Aligned_cols=327 Identities=15% Similarity=0.153 Sum_probs=219.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
-+.+.+..+.+..+++.|++++..-.++. |.+......|..+|....++..|-+.|+++-.. .|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 35666777788899999999999988876 568889999999999999999999999999775 455554443
Q ss_pred -HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH--HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 140 -VIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF--NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 140 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
-.+.+.+.+.+..|+++...|... |+...- ..-.......+++..+..++++....| +..+.+...-...+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 456777889999999999887653 222222 222223456788888888888765332 44455555566678
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc-------------Ch---------
Q 011362 217 TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-------------DV--------- 274 (487)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~--------- 274 (487)
.|+++.|.+-|+...+.+--.....|+.- -++.+.++++.|++...+++++|+.. |.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 99999999999998876533344455544 45667899999999999999876531 11
Q ss_pred ------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhH
Q 011362 275 ------VIHNTLFVGLFEIHQVERAFKLFDEMQRN-GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAY 347 (487)
Q Consensus 275 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 347 (487)
..++.-...+.+.++++.|.+.+-.|--+ ....|+.|+..+.-. -..+++.+..+-+.-+...+ |....+|
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHH
Confidence 11222223355778888888777666322 123456666555432 23455666666666666665 4567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCC-CCcHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLPCGVL-VPNVVTYSIMIGGLC-NDGQMDKARDLFLDM 405 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 405 (487)
..++-.|++..-++-|-+++.+-..... -.+...|+ ++.++. ..-.+++|.+-++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 8899999999889999888865443211 12333443 333332 344566666555444
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=4.5e-07 Score=92.76 Aligned_cols=375 Identities=10% Similarity=-0.050 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
+......+...|++.+|...+..+.. .+. ..............|++..+..+++.+.... ...++.....
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~------~~~~~~l~~~ 414 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV------LLENPRLVLL 414 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH------HhcCcchHHH
Confidence 34445556666776666654443311 110 1112223344556788888777777653211 1112223344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC------CCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhH
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNI------KPN--VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTF 172 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 172 (487)
....+...|+++++..++......-- .+. ......+...+...|++++|...+++........+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45556678999999999987754310 111 112223345567899999999999998763212121 234
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCC---CHh
Q 011362 173 NVIMDELCKNGKMDEASRLLDLMIQH----GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM----GCKH---TVF 240 (487)
Q Consensus 173 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~ 240 (487)
+.+...+...|++++|...++..... |. .....+...+...+...|+++.|...+++.... +... ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55566778899999999999887643 11 111234556677888999999999998876542 2111 123
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCC--Ccc--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcHH--hH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKG--IKP--DVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG--VAADTW--TY 312 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~ 312 (487)
.+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|...+..+.... ...... ..
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 34455667777899999999998876531 111 22344446667788999999999988875421 111111 10
Q ss_pred --HHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCC-cHHHH
Q 011362 313 --RTFIDGLCKNGYIVEAVELFHTLRILKCEFD---IRAYNSLIDGLCKSGRLEIALELFRSLPCG----VLVP-NVVTY 382 (487)
Q Consensus 313 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~ 382 (487)
...+..+...|+.+.|..++........... ...+..+..++...|++++|...++++... +..+ ...+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 1122344568899999999877653221111 111345677788899999999999887642 2222 23456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 383 SIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
..+..++...|+.++|...+.++.+..
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 677788899999999999999998753
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=1.6e-09 Score=92.27 Aligned_cols=149 Identities=16% Similarity=0.084 Sum_probs=63.0
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----CC
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK----NG 323 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 323 (487)
++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. ..| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCch
Confidence 344455555555554321 13334444445555555555555555555442 112 222233332221 12
Q ss_pred CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCH-HHHHHHH
Q 011362 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQM-DKARDLF 402 (487)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 402 (487)
.+.+|..+|+++... .++++.+.+.+..++...|++++|.+++.+..+.+ +-++.++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554332 23444445555555555555555555555544432 22334444444444444444 3344444
Q ss_pred HHHHh
Q 011362 403 LDMEE 407 (487)
Q Consensus 403 ~~~~~ 407 (487)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.1e-08 Score=90.42 Aligned_cols=223 Identities=13% Similarity=0.088 Sum_probs=114.3
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 66 NGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
.-+.+.|++.+|.=.|+...+.+ |.+...|..|...-...++-..|+..+++..+.. +-+..+...|.-.|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYT 364 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHh
Confidence 33445555556655565555554 4555556666555555555555555555555542 224445555555555
Q ss_pred hcCChhhHHHHHHHHHHcCCC-----C---ChhhHHHHHHHHHhCCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHc
Q 011362 146 YAKDWNEAKRLFIEMMDQGVQ-----P---NVVTFNVIMDELCKNGKMDEASRLLDLM-IQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 216 (487)
..|.-.+|++.++..+...++ + +...-.. ..+.....+....++|-.+ ...+..+|+.+...|.-.|.-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 555555565555555443210 0 0000000 1111122223333333332 233333455556666666666
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 011362 217 TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL 296 (487)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (487)
.|++++|...|+.+.... |.|...|+.|...+....+.++|+..|.+.++..+. -+.+...+..+|...|.+++|.+.
T Consensus 443 s~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred chHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHH
Confidence 666666666666666554 445556666666666666666666666666654221 123444455566666666666666
Q ss_pred HHHH
Q 011362 297 FDEM 300 (487)
Q Consensus 297 ~~~~ 300 (487)
|-.+
T Consensus 521 lL~A 524 (579)
T KOG1125|consen 521 LLEA 524 (579)
T ss_pred HHHH
Confidence 5544
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=7e-09 Score=88.44 Aligned_cols=256 Identities=13% Similarity=0.099 Sum_probs=135.0
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG 257 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (487)
.+.-.|.+..++.-.+ ........+......+.+++...|+++.++ .++.... +|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3344566666554444 222211122333444556666666655433 2332222 4444444444444433344445
Q ss_pred HHHHHHHHHHCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 011362 258 ALSLYSEMLSKGIKP-DVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLR 336 (487)
Q Consensus 258 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 336 (487)
++.-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544444433332221 2222222334455667777777766432 345566667777778888888888887777
Q ss_pred HcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011362 337 ILKCEFDIRAYNSLIDGLCK----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP 412 (487)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 412 (487)
+.+ .| .+...++.++.. ...+.+|..+|+++.+. ..+++.+.+.++.++...|++++|..++.+.......
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 542 22 233334444332 23577788888877665 3567777777777778888888888887777665432
Q ss_pred CHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHH
Q 011362 413 NVITFDMLIRGFIRINEP-SKVIELLHKMKEINVMPDASI 451 (487)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~ 451 (487)
++.++..++-+....|+. +.+.+.+.++... .|+...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~~ 271 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCChH
Confidence 556666666666677766 5566677777653 354433
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.2e-06 Score=79.49 Aligned_cols=263 Identities=15% Similarity=0.163 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
|+......+.++...+-+.+-+++++++.-.++.| ..+...-+.|+-...+. +..+..+..+++-..+. |+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F----se~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~--- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF----SENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD--- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc----ccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh---
Confidence 45555666777777788888888888877655332 23334444444444333 44556666666554421 12
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
+...+...+-+++|..+|++.- .+....+.++. .-+..++|.++-++.. .+..|..+..+-.+
T Consensus 1054 ---ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1054 ---IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQ 1116 (1666)
T ss_pred ---HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHh
Confidence 3444556667777777777642 23333444443 2344555555554431 45667777777777
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 011362 217 TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL 296 (487)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (487)
.|.+.+|++-|-+. .|+..|..+++...+.|.|++-.+.+....+..-.|... ..++-+|.+.++..+..++
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 77777777655332 355667777888888888888777777666654444433 4566677777776665544
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHh
Q 011362 297 FDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRS 369 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (487)
+ ..|+......+..-|...+.++.|.-+|..+. .|..|...+...|++..|.+.-++
T Consensus 1189 i-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1189 I-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred h-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3 24566666666666666677766666655432 344555555555555555554443
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.07 E-value=8.1e-06 Score=72.32 Aligned_cols=87 Identities=9% Similarity=0.046 Sum_probs=64.1
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc
Q 011362 13 RILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFG 92 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 92 (487)
+-++.+ |.|..+|+.|++-+..+ -++++.+.++++... .+-.+..|..-+..-.+..+++...++|.+.+..
T Consensus 11 ~rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk----- 82 (656)
T KOG1914|consen 11 ERIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK----- 82 (656)
T ss_pred HHHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----
Confidence 334444 56888899888876555 888899999888764 2445667888888888888999999998887764
Q ss_pred cccccchHHHHHHHHHHH
Q 011362 93 VVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~ 110 (487)
..+.+.|...+..--
T Consensus 83 ---vLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 83 ---VLNLDLWKLYLSYVR 97 (656)
T ss_pred ---HhhHhHHHHHHHHHH
Confidence 356777777776443
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.05 E-value=3.6e-07 Score=89.24 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=154.2
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHccCChHHHHHHH
Q 011362 7 GFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD-----VFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 7 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
-..-|++++... |.++..|...+....+.++.++|++++++++.. +.+. .-+|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344566666654 445667888888888888888888888887754 2221 125666666666667777778888
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+++.+.. ..-..|..|...|.+.+.+++|.++++.|.+. .......|...+..+.+.++-+.|..++.+++
T Consensus 1521 eRAcqyc--------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1521 ERACQYC--------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHhc--------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8877743 23456777777888888888888888887665 33466677777777777777777888877776
Q ss_pred HcCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH-
Q 011362 162 DQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV- 239 (487)
Q Consensus 162 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 239 (487)
+.-+.. ........+..-.+.|+.+++..+|+..+..- +--...|+.++..-.+.|+.+.+..+|+++...++.+..
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 642110 12223334445556777777777777766652 224566777777777777777777777777766554422
Q ss_pred -hhHHHHHHHHHccCCHhHHH
Q 011362 240 -FSYSILINGYCKNKEIEGAL 259 (487)
Q Consensus 240 -~~~~~l~~~~~~~~~~~~a~ 259 (487)
..|...+..=-+.|+-+.+.
T Consensus 1671 KfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHHHHHHHHhcCchhhHH
Confidence 23444444333444443333
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=1.4e-07 Score=86.06 Aligned_cols=237 Identities=14% Similarity=0.082 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHH
Q 011362 201 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTL 280 (487)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 280 (487)
+|-...-..+...+...|-...|..+++++. .|...+.+|+..|+..+|..+..+-.+ -+|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444455667788888999999999998765 567788999999999999999988877 35788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH
Q 011362 281 FVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRL 360 (487)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 360 (487)
....-...-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 77777777778888887665432 11222223345789999999999888766 66778888888888899999
Q ss_pred HHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 361 EIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKM 440 (487)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (487)
+.|.+.|....... +.+...||.+..+|.+.|+..+|...+++..+.+ .-+...|...+-....-|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999888753 4456899999999999999999999999999887 446777888888889999999999999998
Q ss_pred HhcCC-CCCHHHHHHHHHH
Q 011362 441 KEINV-MPDASIVSIVVDL 458 (487)
Q Consensus 441 ~~~~~-~~~~~~~~~l~~~ 458 (487)
.+... ..|..+...++..
T Consensus 614 l~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHhhhhcccchhhHHHHHH
Confidence 74321 1244444444433
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=4e-07 Score=84.28 Aligned_cols=351 Identities=16% Similarity=0.070 Sum_probs=201.2
Q ss_pred CCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccc---c
Q 011362 21 PDAVTFTSLIK--GLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVV---C 95 (487)
Q Consensus 21 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~ 95 (487)
-|..+-..++. .|...|+.+.|.+..+.+. +..+|..+...|.+..+.+-|.-.+-.|....+....- -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 35666666665 4678899999988877765 35678899999999888887776665554432100000 0
Q ss_pred ccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 011362 96 EPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
.++ ..=..........|.+++|..+|.+-++. ..|=..|-..|.|++|.++-+.--... =..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 111 12222333345679999999999887753 344456667899999999876532221 23466667
Q ss_pred HHHHHhCCChHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC
Q 011362 176 MDELCKNGKMDEASRLLDLMI----------QHG---------VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCK 236 (487)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (487)
..-+-..++.+.|+++|++.. ... -..|...|.-....+...|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 777777888888888876432 110 122445556666666777888888888876653
Q ss_pred CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----------cCCC
Q 011362 237 HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR----------NGVA 306 (487)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~ 306 (487)
|..+++..|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|.+... ++..
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK 1009 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 333444444455555554443321 1333344455555555555555555543321 1100
Q ss_pred C------------cH-----------HhHHHHHHHHHhCCCHhHHHHHHHH--------HH--HcCCCCChHhHHHHHHH
Q 011362 307 A------------DT-----------WTYRTFIDGLCKNGYIVEAVELFHT--------LR--ILKCEFDIRAYNSLIDG 353 (487)
Q Consensus 307 ~------------~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~--------~~--~~~~~~~~~~~~~l~~~ 353 (487)
. |. .-....+..|.+.|.+.+|+++--+ ++ +.....|+...+.-.+.
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF 1089 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF 1089 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 0 00 0011223345566666666543211 11 22334567777777777
Q ss_pred HHhcCCHHHHHHHHHhccC----------CC----------------CCCcH----HHHHHHHHHHHccCCHHHHHHHHH
Q 011362 354 LCKSGRLEIALELFRSLPC----------GV----------------LVPNV----VTYSIMIGGLCNDGQMDKARDLFL 403 (487)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~----------~~----------------~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 403 (487)
+....++++|..++-...+ .| -.|+. .....+...|.++|.+..|-+-|.
T Consensus 1090 F~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 7777777777766643321 11 11222 345667778888888888777665
Q ss_pred HH
Q 011362 404 DM 405 (487)
Q Consensus 404 ~~ 405 (487)
++
T Consensus 1170 QA 1171 (1416)
T KOG3617|consen 1170 QA 1171 (1416)
T ss_pred hh
Confidence 44
No 106
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=7.6e-07 Score=77.12 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=143.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-HTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
+..+-..+...++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------pknyqaW~~ 111 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------PKNYQIWHH 111 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-------CcchHHhHH
Confidence 3344444556778888999998888774 445556766666666667 5788999998888876 566667776
Q ss_pred HHHHHHhcCCh--hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 105 IIDGLCKEGFV--DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 105 l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
...++.+.|.. +++++.++++.+.+. -+..+|+....++...|+++++++.++++++.++. +...|+.....+.+.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 65555566653 677888888877653 37788888888888888899999999998887654 566666665555443
Q ss_pred ---CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 011362 183 ---GKM----DEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT----GRVNHAKELFVSMESMGCKHTVFSYSILINGYCK 251 (487)
Q Consensus 183 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 251 (487)
|.. ++.+.+...++.... -+...|+.+...+... +...+|.+.+......+ +.+......|+..|+.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 356666656665532 3566676666666552 33455666666665543 4456666677777764
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.03 E-value=8.1e-07 Score=84.01 Aligned_cols=184 Identities=10% Similarity=0.082 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011362 74 TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEA 153 (487)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 153 (487)
...|...|-+..+.+ +.-...|..|...|....+...|.+.|++..+.+ ..+...+......|++..+|+.|
T Consensus 474 ~~~al~ali~alrld-------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 555666665555544 3335667777777777667777777777776653 23566677777777777888877
Q ss_pred HHHHHHHHHcCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011362 154 KRLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 232 (487)
Q Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (487)
..+.-..-+... ..-...|....-.|.+.++...+..-|+...+..+. |...|..++.+|.+.|.+..|.++|.++..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 777333222110 001122333334556677777777777777665333 667777777888888888888887777765
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 233 MGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
.. |.+...-......-+..|.+.+|+..+..+..
T Consensus 625 Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 625 LR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 53 22222222333344566777777777766553
No 108
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=1.2e-06 Score=75.95 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CC----HHHHH
Q 011362 292 RAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS---GR----LEIAL 364 (487)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~ 364 (487)
++..+++++.+.. +-+..++.....++...|+++++++.+.++++.+ +.+..+|+.....+.+. |. .+++.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 3444444444432 2233444444444444455555555555554443 23334444333333222 11 12344
Q ss_pred HHHHhccCCCCCCcHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011362 365 ELFRSLPCGVLVPNVVTYSIMIGGLCND----GQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR 426 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (487)
.+..+++... +-|...|+.+...+... ++..+|..++.+..+.++ .+...+..|+..|+.
T Consensus 204 ~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 4443444332 33444555555555442 223445555555444321 134445555555543
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.4e-05 Score=76.22 Aligned_cols=319 Identities=13% Similarity=0.133 Sum_probs=175.4
Q ss_pred HHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011362 8 FVVLGRILKSCFT--PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE--PDVFTYTTLVNGLCRTSHTIVALNLFEE 83 (487)
Q Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 83 (487)
+++.++.++.+.+ .|++..+..+.++...+-+.+-+++++++.-.+-. .+...-+.++-...+. +..+..+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 4556666655544 34566677788899999999999999998753211 1122233333333332 33344444444
Q ss_pred HHhCCCCCccc-----------------cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011362 84 MANGNGEFGVV-----------------CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY 146 (487)
Q Consensus 84 ~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 146 (487)
+..-+.+--.. ...+..+.+.|+.- -+.+++|.+.-++.. .+.+|..+..+-.+
T Consensus 1046 LdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1046 LDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQ 1116 (1666)
T ss_pred hccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHh
Confidence 44332000000 01122222222221 233344433333221 34677888888888
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHH
Q 011362 147 AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 226 (487)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (487)
.|...+|++-|-+. .|+..|..++....+.|.+++..+++....+..-+|... ..|+-+|++.++..+.+++
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 88888887766543 266678888888888888888888887777765554433 4567778888777665554
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011362 227 FVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA 306 (487)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (487)
+ ..|+......+..-|...+.++.|.-+|..+ .-|..+...+...|++..|.+.-+++.
T Consensus 1189 i-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn----- 1247 (1666)
T KOG0985|consen 1189 I-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN----- 1247 (1666)
T ss_pred h-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 4 2456666667777777777777776666433 345666667777777776665443321
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 307 ADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
+..+|..+-.+|...+.+.-| .+...++-....-+..++..|-..|-+++-+.+++...
T Consensus 1248 -s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1248 -STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred -chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 334454444444444333322 11112222233334445555555555555555555443
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=2.2e-06 Score=78.70 Aligned_cols=188 Identities=18% Similarity=0.159 Sum_probs=76.3
Q ss_pred HcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHH
Q 011362 215 CLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAF 294 (487)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (487)
.....+.+|+.+++.+.+.+ ....-|..+...|...|+++.|.++|.+. ..+.-.+..|.+.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 33444444444444444331 12222334444444445554444444321 11223344444445554444
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 011362 295 KLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (487)
++-.+... .......|..-..-+-..|++.+|.++|-.+. .|+ ..|.+|-+.|..+..+++..+-....
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 44333321 12222333333333444444444444443221 222 22344444555444444444332110
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011362 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
-..|-..+..-+-..|+...|...|-+.-+ |..-+..|..++-+++|.++
T Consensus 881 ---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 881 ---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred ---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 112333444445555555555555443322 33344445555555555443
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.99 E-value=5.9e-07 Score=87.83 Aligned_cols=226 Identities=14% Similarity=0.064 Sum_probs=152.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP-----DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 242 (487)
+...|-..|......++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.- .....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4556777777778888888888888877654 211 13456666666666677777778888877652 234457
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHhHHHHHHHH
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD---TWTYRTFIDGL 319 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 319 (487)
..|...|.+.+..++|.++++.|.+. +.....+|...+..+.+.++.+.|..++.++++. -|. .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 77888888888888888888888775 2245667888888888888888888888777764 232 34455556666
Q ss_pred HhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH--HHHHHHHHHHHccCCHHH
Q 011362 320 CKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV--VTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 397 (487)
.+.|+.+++..+|+...... |.....|+.+++.-.++|+.+.++.+|+++...++.|.. ..|...+..--..|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 77788888888887777543 556677778888777888888888888877776655543 233333333333444443
Q ss_pred HHH
Q 011362 398 ARD 400 (487)
Q Consensus 398 A~~ 400 (487)
++.
T Consensus 1690 vE~ 1692 (1710)
T KOG1070|consen 1690 VEY 1692 (1710)
T ss_pred HHH
Confidence 333
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=1.7e-06 Score=79.34 Aligned_cols=225 Identities=16% Similarity=0.135 Sum_probs=157.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 011362 175 IMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE 254 (487)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (487)
.+.+......+.+|+.+++.+..... -..-|..+...|+..|+++.|.++|.+.- .++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34455667788899999988876633 34456778899999999999999986542 46677899999999
Q ss_pred HhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 011362 255 IEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHT 334 (487)
Q Consensus 255 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 334 (487)
|+.|.++-.+... +......|..-..-.-..|++.+|.+++-.+. .|+ ..+.+|-+.|..+..+++..+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 9999998777653 34445566666666778899999988775543 243 346788899999988887766
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 011362 335 LRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNV 414 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 414 (487)
-.. ..-..+...+..-|...|++..|..-|-+..+ |.+-+..|...+-+++|.++-+. .|- .|.
T Consensus 876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg-~n~ 939 (1636)
T KOG3616|consen 876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGG-ANA 939 (1636)
T ss_pred hCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---ccc-ccH
Confidence 432 22234556677788889999999988866553 45556677778888888776432 222 244
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 415 ITFDMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
.-....+++-.-.| +.|.+++++
T Consensus 940 ~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 940 EKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHHHHHhhCc--HHHHHHHHh
Confidence 33344455444444 567777776
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=2.7e-07 Score=84.25 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGY 249 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (487)
..-..+...+.+.|-...|..+++++ ..|...+.+|...|+..+|..+..+..+. +|++..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 33445677888999999999999875 45666788999999999999999888773 78999999999888
Q ss_pred HccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHH
Q 011362 250 CKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAV 329 (487)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 329 (487)
....-+++|+++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|....-+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8777889999988776442 22333334456799999999998887753 445678888888888999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 330 ELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
+.|....... |.+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++.+..
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999988764 5677899999999999999999999999999876 5567788888888999999999999999986431
Q ss_pred -CCCCHHHHHHHHHHH
Q 011362 410 -VVPNVITFDMLIRGF 424 (487)
Q Consensus 410 -~~~~~~~~~~l~~~~ 424 (487)
...|..+...++...
T Consensus 618 ~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhcccchhhHHHHHHH
Confidence 111444444444443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.96 E-value=2.2e-07 Score=74.43 Aligned_cols=164 Identities=14% Similarity=0.111 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
|..+ ..+-..+...|+-+....+..+..... +.+......++....+.|++..|...+.+.... -++|..+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhh
Confidence 4444 556667777787777777777766543 556666777788888888888888888887765 3567888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
|+.+.-+|.+.|+++.|..-|.+..+..+. ++...+.+.-.+.-.|+.+.|..++......+.. |..+-..+......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhh
Confidence 888888888888888888888887776333 5566777777788888888888888877766332 66667777777788
Q ss_pred CCCHhHHHHHHHHHH
Q 011362 217 TGRVNHAKELFVSME 231 (487)
Q Consensus 217 ~~~~~~a~~~~~~~~ 231 (487)
.|+++.|..+...-.
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 888888887765543
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=6e-08 Score=78.12 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH-HhcCC
Q 011362 36 ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL-CKEGF 114 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 114 (487)
.++.++++..++..++.+ +.+...|..+...|...|++++|...|++..+.. |.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------GENAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCC
Confidence 566677777777776664 5667777777777777788888877777777765 55677777777653 55565
Q ss_pred --hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 115 --VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 115 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
.++|.+++++..+.+ +-+..++..+...+.+.|++++|+..|+++.+.
T Consensus 124 ~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 477777777777764 236667777777777778888888888777765
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=2.6e-07 Score=77.91 Aligned_cols=189 Identities=10% Similarity=-0.039 Sum_probs=129.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV---FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
.....+..++..+...|++++|...|+++.... +.+. .++..+..++...|++++|+..++++.+..+.. +.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH----PD 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----Cc
Confidence 346778888999999999999999999998864 2222 467788899999999999999999999876210 11
Q ss_pred chHHHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh
Q 011362 98 NTVTYTTIIDGLCKE--------GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV 169 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 169 (487)
...++..+..++... |+.+.|.+.++.+.... +-+...+..+...... .....
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----------~~~~~-------- 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----------RNRLA-------- 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----------HHHHH--------
Confidence 122566666666654 77889999999988763 2222233222211100 00000
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
.....+...+.+.|++.+|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678888888888888888877532 123567778888888888888888888777654
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=3.8e-05 Score=68.23 Aligned_cols=174 Identities=12% Similarity=0.126 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 290 VERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEF-DIRAYNSLIDGLCKSGRLEIALELFR 368 (487)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (487)
.+.....+++++......-..+|...+..-.+..-+..|..+|.++.+.+..+ ++.+.++++..|+ .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55666666666554222223467777887778888999999999998776555 6777788887766 578899999998
Q ss_pred hccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---
Q 011362 369 SLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEI--- 443 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 443 (487)
.-... ...++.--...+..+...++-..|..+|++....++.|+ ..+|..++.-=..-|+...+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 76554 233444456677778888888999999999988766655 478999998888889999998888887642
Q ss_pred CCCCCHHHHHHHHHHHHhcccc
Q 011362 444 NVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
...+....-..+++.|.=.+..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 1233334455556666555554
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=6.3e-07 Score=72.21 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH-HccCC--HHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL-CNDGQ--MDKA 398 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 398 (487)
.++.+++...++.....+ +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666665554 5566666666667777777777777776666543 33555666666553 45555 3677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 011362 399 RDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA 449 (487)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 449 (487)
..++++..+.+.. +...+..+...+...|++++|...|+++++.. +|+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 7777777665322 45566666666667777777777777776654 3443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=9e-07 Score=71.02 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
+... ..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...+.+.... -++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 3444 55556666667766666666654432 2334455555677777777777777777777654 3446677777777
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG 257 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (487)
+|.+.|+++.|..-|.+..+... -++...+.+.-.+.-.|+.+.|..++......+ +.+...-..+.......|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 77777777777777777666522 255666667777777777777777777766553 3356666667777777777777
Q ss_pred HHHHHHHHH
Q 011362 258 ALSLYSEML 266 (487)
Q Consensus 258 a~~~~~~~~ 266 (487)
|..+...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 776665443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=3.2e-07 Score=69.87 Aligned_cols=108 Identities=14% Similarity=-0.014 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
.+|+++++.+ |+ .+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...|+.....+
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4566666553 22 24456677777788888888888777664 4566677777777778888888888888877765
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|.+...+..+..++...|++++|...|+.....
T Consensus 89 -------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777788888888888777765
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=1.6e-06 Score=73.00 Aligned_cols=189 Identities=11% Similarity=-0.077 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 011362 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV 135 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 135 (487)
.....+..++..+...|+++.|...|+++....+. .+.....+..+..++...|++++|...++.+.+.... +..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPD 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCc
Confidence 34566778888899999999999999998886521 0112356788888999999999999999999876321 222
Q ss_pred ---hHHHHHHHHHhc--------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 011362 136 ---TYTSVIRGFCYA--------KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA 204 (487)
Q Consensus 136 ---~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 204 (487)
++..+..++... |++++|.+.++.+....+. +...+..+..... ... .. .
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~ 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------A 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------H
Confidence 455566666554 6788899999888775322 2222222111100 000 00 0
Q ss_pred HHHHHHHHHHHcCCCHhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMG--CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.....+...+.+.|++++|...++.+.+.. .+.....+..+..++...|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 111245677899999999999999998763 1234578889999999999999999999888765
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=5e-06 Score=80.61 Aligned_cols=138 Identities=10% Similarity=-0.008 Sum_probs=83.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-------
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFG------- 92 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------- 92 (487)
+.+...+..|+..+...+++++|+++.+...+.. +-....|..++..+.+.+++.++.-+ .+...-+.-.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 3468889999999999999999999999877763 33334455555577777776665554 2222210000
Q ss_pred -----cccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 93 -----VVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 93 -----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...+.+..++..++.+|-+.|+.++|..+|+++.+.. +-++.+.+.+...|... ++++|.+++.+...
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 0001122445555566666666666666666666654 33556666666666666 66666666655544
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.78 E-value=0.00017 Score=68.22 Aligned_cols=220 Identities=19% Similarity=0.190 Sum_probs=113.9
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIK--GLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
+++..|++....+++.. |+... ..++. .+.+.|+.++|..+++.....+ ..|..+...+-..|...++.++|..
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNALY-AKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45666777777776663 34332 22222 2456677777776666655444 2355666666677777777777777
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-C---------
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK-D--------- 149 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------- 149 (487)
+|+.+.+.. |+......+..+|.+.+++.+-.++=-++-+. .+-+...|-.++..+...- .
T Consensus 99 ~Ye~~~~~~--------P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 99 LYERANQKY--------PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHhhC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 777777654 44555566666666666554433332222221 2223344434444433221 1
Q ss_pred hhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhCCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHH
Q 011362 150 WNEAKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASRLLD-LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 227 (487)
Q Consensus 150 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (487)
..-|.+.++.+.+.+ .--+..-.......+...|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 122344444444432 11111222223334455666777777763 2333222334444445556666667777777777
Q ss_pred HHHHHcC
Q 011362 228 VSMESMG 234 (487)
Q Consensus 228 ~~~~~~~ 234 (487)
.++...+
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 6666664
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=9.9e-06 Score=65.19 Aligned_cols=258 Identities=15% Similarity=0.091 Sum_probs=167.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
|+...|+ ++.+.-.|++..++..-+..... +.++..-..+.++|...|++...+.- +.... .+...
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-------~~~lq 73 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-------ATPLQ 73 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-------CChHH
Confidence 4445555 46777889999988877665543 24444455567788888876544332 22211 23344
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKA-KELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 179 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (487)
.+..+......-++.+.- .++.+.+.......+......-+..|+..+++++|++...... +......=...+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~ 147 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQIL 147 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHH
Confidence 444444444444444433 3445555554443343444445567888999999999887622 333333444566
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 011362 180 CKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC----LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEI 255 (487)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 255 (487)
.+..+++-|.+.++.|.+.. +..|.+.|..++. ..+.+.+|.-+|+++.+. .+|++.+.+..+.++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 77788899999999998752 5566666666554 445788899999998764 378888899999999999999
Q ss_pred hHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011362 256 EGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVER-AFKLFDEMQRN 303 (487)
Q Consensus 256 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 303 (487)
++|..+++..+..... ++.+...++.+....|...+ ..+.+.++...
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999887554 66666666666666665533 44455555554
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.77 E-value=0.00018 Score=68.02 Aligned_cols=462 Identities=14% Similarity=0.089 Sum_probs=243.0
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+|+.++|..+++.....+.. |..+...+-.+|...|+.++|..+|+++... .|+......+..+|.+.+++.+-.+.
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred hcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988777543 8888999999999999999999999999876 56777788888899999888765544
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcC-C---------hhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCC
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG-F---------VDKAKELLLQMKDKN-IKPNVVTYTSVIRGFCYAKD 149 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 149 (487)
--++-+. .|.++..|-.+++...+.- . ..-|.+.++.+.+.+ .--+..-...-.......|+
T Consensus 133 a~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k 205 (932)
T KOG2053|consen 133 ALQLYKN-------FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGK 205 (932)
T ss_pred HHHHHHh-------CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhccc
Confidence 4444443 3555666666666555432 1 234556666666553 11122222233344556889
Q ss_pred hhhHHHHHH-HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-----HHHHHHH--------HH
Q 011362 150 WNEAKRLFI-EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFT-----YNTLLDG--------FC 215 (487)
Q Consensus 150 ~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~--------~~ 215 (487)
+++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.. |-.+ +..+-.. +.
T Consensus 206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhh
Confidence 999999984 3333323334444455667788889999999998888887543 2111 1111111 11
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH---HccCCHhHHHHHHHHHHHCC------C-----ccChhhHHHHH
Q 011362 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGY---CKNKEIEGALSLYSEMLSKG------I-----KPDVVIHNTLF 281 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~------~-----~~~~~~~~~l~ 281 (487)
..+..+...+...+..... ....|-+-+.++ ..-|+.+++...|-+-.... + ..+..-...++
T Consensus 285 ~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~ 361 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLM 361 (932)
T ss_pred hhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHH
Confidence 1122333333333322221 111222222222 23466666544332211100 0 00000011111
Q ss_pred HHHH------------------------hcCC-----HHHHHHHHHHHH---HcC------CCCcH---------HhHHH
Q 011362 282 VGLF------------------------EIHQ-----VERAFKLFDEMQ---RNG------VAADT---------WTYRT 314 (487)
Q Consensus 282 ~~~~------------------------~~~~-----~~~a~~~~~~~~---~~~------~~~~~---------~~~~~ 314 (487)
..+. ..|. .+....++.++. +.| .-|+. .+.+.
T Consensus 362 ~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~ 441 (932)
T KOG2053|consen 362 SKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNH 441 (932)
T ss_pred HHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHH
Confidence 1111 1121 122222222221 112 12221 23355
Q ss_pred HHHHHHhCCCHh---HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc
Q 011362 315 FIDGLCKNGYIV---EAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN 391 (487)
Q Consensus 315 l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (487)
++..+-+.++.. +|+-+++...... +.+..+--.++..|.-.|-+..|.++|..+.-.++..|..-| .+.+.+..
T Consensus 442 Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t 519 (932)
T KOG2053|consen 442 LIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAET 519 (932)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHh
Confidence 666777777654 4555555555443 445555567788888888888888888877655444443322 23344555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH---HHHHHhcCCCCCHHHHHHHHHHHHhcccc---
Q 011362 392 DGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIEL---LHKMKEINVMPDASIVSIVVDLLAKNEIS--- 465 (487)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 465 (487)
.|++..+...++...+.--..-..+- -++....+.|.+.+..++ -++|.......-..+-+..++.++..++.
T Consensus 520 ~g~~~~~s~~~~~~lkfy~~~~kE~~-eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~ 598 (932)
T KOG2053|consen 520 SGRSSFASNTFNEHLKFYDSSLKETP-EYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQL 598 (932)
T ss_pred cccchhHHHHHHHHHHHHhhhhhhhH-HHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 67777777777665542100011122 223333456666554433 23333222222233445555555555555
Q ss_pred cccccccccchhhh
Q 011362 466 LNSLPSFTVHEQQE 479 (487)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (487)
...++.+...|..+
T Consensus 599 ~~~~~~~~l~~~e~ 612 (932)
T KOG2053|consen 599 LKLLESMKLPPSED 612 (932)
T ss_pred HHHHhccccCcchh
Confidence 34444444444333
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=6.4e-07 Score=68.20 Aligned_cols=91 Identities=10% Similarity=-0.095 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011362 350 LIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINE 429 (487)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (487)
+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+++.... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444455555555554444432 2334444444444555555555555555554432 1134444444444445555
Q ss_pred hhHHHHHHHHHHh
Q 011362 430 PSKVIELLHKMKE 442 (487)
Q Consensus 430 ~~~a~~~~~~~~~ 442 (487)
+++|...+++.++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.77 E-value=1.1e-05 Score=78.24 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=27.2
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (487)
.+..++.+|-+.|+.++|..+|+++++.++ -++.+.+.++-.|... +.++|..++.++.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 444444444445555555555555444432 2444444444444444 4444444444433
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.77 E-value=5.3e-07 Score=68.50 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=80.6
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..|++++... |.+......++..+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.+
T Consensus 4 ~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566666664 3345556667777778888888888888877764 4566677777777778888888888888777765
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+.+...+..+..++...|++++|...|+...+.
T Consensus 82 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -------PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777777777888888888888777765
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=1.1e-05 Score=64.47 Aligned_cols=189 Identities=13% Similarity=0.072 Sum_probs=109.1
Q ss_pred cCCCHhHHHHHHHHHHHc---C-CCCCHh-hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH
Q 011362 216 LTGRVNHAKELFVSMESM---G-CKHTVF-SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (487)
...+.++..+++..+... | ..++.+ .|..++.+....|+.+.|..+++++...- +.+..+...-...+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 344566666666666432 2 233332 23444555556677777777777766652 22333333333344556777
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhc
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSL 370 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (487)
++|.++++.+.+.+ +.|..++..-+...-..|..-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777776654 445555555555555666666666666666653 3567777777777777777777777777776
Q ss_pred cCCCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhC
Q 011362 371 PCGVLVPNVVTYSIMIGGLCNDG---QMDKARDLFLDMEEN 408 (487)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 408 (487)
.-.. |-++..+..+...+.-.| +..-|.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6432 334444455555444333 455566666666663
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.4e-05 Score=63.04 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=56.7
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.+.+..+.+-|...+++|.+.. +-.+.+.|..+|.+ .+.+..|.-+|+++.+. .+|+..+.+..+.++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 3444455555555555555321 23344444444432 23355555555555543 2555555555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSK-VIELLHKMK 441 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~ 441 (487)
++++|..+++++...... ++.++..++-.-...|...+ ..+.+.+++
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 566665555555554322 44444444433334443322 233444444
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=1e-05 Score=77.64 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=111.4
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHH
Q 011362 271 KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSL 350 (487)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 350 (487)
..+...+..|.....+.|.+++|..+++.+.+.. +.+......++..+.+.+++++|...++...... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3456777777788888888888888888887752 3334566667777788888888888888887665 5566677777
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011362 351 IDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEP 430 (487)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (487)
..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+.. .|....|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 777888888888888888877632 3446677777778888888888888888887652 23344444333 233
Q ss_pred hHHHHHHHHHH
Q 011362 431 SKVIELLHKMK 441 (487)
Q Consensus 431 ~~a~~~~~~~~ 441 (487)
..-..+++++.
T Consensus 233 ~~~~~~~~~~~ 243 (694)
T PRK15179 233 NADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHcC
Confidence 44455566655
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=2.8e-06 Score=81.37 Aligned_cols=136 Identities=10% Similarity=0.065 Sum_probs=115.3
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 19 FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
.+.++..+..|.....+.|.+++|..+++.+.+.. +.+......++.++.+.+++++|+..+++..... |.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~ 153 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSS 153 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCC
Confidence 35568888889999999999999999999998874 4455677788889999999999999999999876 677
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
......+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888999999999999999999998743 345778888899999999999999999998765
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.9e-08 Score=52.58 Aligned_cols=31 Identities=45% Similarity=0.868 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011362 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDM 405 (487)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (487)
+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=4.7e-06 Score=73.03 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=91.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+......+...|++++|+..++.++... +.|+..+......+.+.++.++|.+.++++.... |......
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------P~~~~l~ 377 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-------PNSPLLQ 377 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCccHHH
Confidence 3344445555667788888888888877652 3444455566677778888888888888877764 3346666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
-.+..+|.+.|++.+|+.+++..... .+-++..|..|.++|...|+..++.....+...
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 77777788888888888887777665 345777788888888888777777776666554
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=7.3e-08 Score=51.89 Aligned_cols=34 Identities=29% Similarity=0.639 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 408 NAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
+|+.||..+|+.++.+|++.|+.++|.+++++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=4.6e-05 Score=61.01 Aligned_cols=190 Identities=11% Similarity=0.111 Sum_probs=119.0
Q ss_pred hcCCHHHHHHHHHHHHhc---C-CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 35 AESRIMEAAALFTKLRVF---G-CEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
...+.++.++++..++.. | ..++.. .+..++-+....|+.+.|..+++.+...- |.+...-..-...+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~~lkam~l 96 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVGKLKAMLL 96 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHHHHHHHHH
Confidence 445666666666665543 2 234443 34455566667777777877777776653 33333333333344
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
-..|++++|.++++.+.+.+ +.|..++..-+...-..|+-.+|++-+....+. +..|...|..+...|...|++++|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 55677788888888777764 345556655555555667777777777777665 4447777888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHhHHHHHHHHHHHcC
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVSMESMG 234 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 234 (487)
-.+++++-.. +.++..+..+...+.-.| +...+.+.|.+..+..
T Consensus 175 fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 175 FCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8887776652 235555666665554444 4556677777776654
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=3.1e-06 Score=64.22 Aligned_cols=110 Identities=11% Similarity=0.007 Sum_probs=75.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 45 LFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQ 124 (487)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 124 (487)
.++++.... +.+......+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|..+++.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555442 2234455566677777778888888887777655 55667777777777777778888877777
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 125 MKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
....+ +.+...+..+..++...|++++|...|+...+.
T Consensus 77 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 77 AAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76653 345666677777777777788887777777664
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=4.6e-05 Score=67.04 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK 356 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (487)
..-....+...+++++|+..+..+... .+.|+.......+.+.+.++..+|.+.++++.... |........+..+|.+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence 333444566788888888888888776 34556666677778888899999999998888764 3336667778888888
Q ss_pred cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011362 357 SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
.|++.+|+.+++...... +.++..|..|..+|...|+..++..-. ...+...|+++.|...
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHH
Confidence 999999988888877653 667888888999998888877766543 3345667788888888
Q ss_pred HHHHHhcCCCCCHHHH
Q 011362 437 LHKMKEINVMPDASIV 452 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~ 452 (487)
+.+..+.. +++...|
T Consensus 448 l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 448 LMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHhc-cCCcHHH
Confidence 87777543 3444444
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=1.8e-05 Score=60.66 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc--
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN-- 98 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-- 98 (487)
..|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+....+ .+.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~------d~~l~ 84 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP------DPELK 84 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC------CHHHH
Confidence 3455555554 4777777777787777763 222 22334455677778888888888888777541 121
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
......+..++...|++++|+..++..... ......+.....++.+.|++++|...|+..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 234455677777788888888887664433 234456666777788888888888877654
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=1.5e-05 Score=70.61 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|++++.+..+.. |.+......-...
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-------p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-------PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 3444445555555666655555442 332 2234455555555555555555555443 3444445555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+.+.++++.|+++.+++.+.. |-+..+|..|..+|...|+++.|+..+..+
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555555555541 223345555555555555555555555543
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=2.7e-05 Score=59.61 Aligned_cols=116 Identities=13% Similarity=0.071 Sum_probs=64.8
Q ss_pred CCCHhHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH--HHHHHHHHHHHccCCHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFD---IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV--VTYSIMIGGLCNDGQMD 396 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 396 (487)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+. .....+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666666666666543 222 122333445566667777777777766664311221 23344556666677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 397 KARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKM 440 (487)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (487)
+|+..++..... ...+..+.....++.+.|++++|...|++.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777776553322 223445556666677777777777766654
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=7.8e-05 Score=66.22 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=62.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
.|+..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|.+++++.++.. +.+..........+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555555555555555442 22 23334455555555555555555555432 224444444445555555
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
+++.|+.+.+++.... |.+..+|..|..+|.+.|+++.|+..+..+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5666666655555543 3344455556666666666666655555443
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.31 E-value=1.4e-05 Score=71.16 Aligned_cols=122 Identities=10% Similarity=0.127 Sum_probs=77.2
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC--CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV--LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFD 418 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 418 (487)
+.+......++..+....+.+.+..++.+..... ...-..|..++++.|.+.|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4445555555666555566666666666555431 11112344567777777777777777777777777777777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 011362 419 MLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKN 462 (487)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (487)
.|+..+.+.|++..|.++.-.|...+...++.+....+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777766555555666666666666665
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.31 E-value=1.3e-06 Score=59.55 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=64.2
Q ss_pred CCccchHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|+++.|+.++++++...+. ++...+..+..+|.+.|++++|+.++++ ...+ +.+......+..++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 48899999999999998742 2455666789999999999999999998 4332 2334555567899999999999999
Q ss_pred HHHHH
Q 011362 80 LFEEM 84 (487)
Q Consensus 80 ~~~~~ 84 (487)
+|++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=7.6e-05 Score=55.11 Aligned_cols=100 Identities=12% Similarity=-0.038 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCE--PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
++..++..+...|++++|.+.|+.+...... .....+..+..++.+.|+++.|.+.|+.+....+. .+....++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----SPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----CCcccHHH
Confidence 4556677777788888888888877765311 11345566777777788888888888877764421 11224566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..+..++...|+.++|...++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 67777777777777777777777765
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=3e-05 Score=54.60 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
+..++..+...|++++|+..++++.+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-------PDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CcchhHHHHH
Confidence 4455666666777777777777766553 3333555566666666677777777777666654 3344566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 011362 106 IDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
...+...|+.+.|...+....+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 6666666666666666666554
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.21 E-value=4.7e-06 Score=56.85 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=57.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC
Q 011362 36 ESRIMEAAALFTKLRVFGCE-PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF 114 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (487)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+ +.+......++.++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHHHHHHHHhCC
Confidence 57888888888888877421 2444566678888888888888888887 3322 3344555566888888888
Q ss_pred hhHHHHHHHH
Q 011362 115 VDKAKELLLQ 124 (487)
Q Consensus 115 ~~~a~~~~~~ 124 (487)
+++|++++++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888875
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=4.8e-05 Score=57.01 Aligned_cols=97 Identities=14% Similarity=-0.032 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
.....+...+...|++++|.++|+-+.... +-+..-|..|..++-..|++++|+..|......+ +.++..+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------~ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------IDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHHH
Confidence 334444555556666666666666655543 3344445556666666666666666666665554 44555666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.+..++...|+.+.|.+.|+..+..
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666655443
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=0.0053 Score=57.00 Aligned_cols=203 Identities=12% Similarity=0.057 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH----------HHHhcCChhHHHHHHHH
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID----------GLCKEGFVDKAKELLLQ 124 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~a~~~~~~ 124 (487)
.|.+..|..+.......-.++.|...|-+...-. .......|-. .-.--|++++|.++|-.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 6888899999888888888888888877655432 1211111111 11224788888888877
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 011362 125 MKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD 203 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 203 (487)
+-+++ ..+..+.+.|+|-...++++.--.. .-..-...|+.+...++....+++|.++|..-..
T Consensus 760 ~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------ 824 (1189)
T KOG2041|consen 760 ADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------ 824 (1189)
T ss_pred cchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 76542 2445566677777776666431100 0001123566666667777777777777654321
Q ss_pred HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHH
Q 011362 204 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVG 283 (487)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (487)
. ...+.++.+..++++-+.+...+ +.+....-.+..++.+.|.-++|.+.+-+... | ...+..
T Consensus 825 ~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~t 887 (1189)
T KOG2041|consen 825 T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHT 887 (1189)
T ss_pred h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHH
Confidence 1 12345555555555544443332 44555666677777777777777766543211 1 233455
Q ss_pred HHhcCCHHHHHHHHH
Q 011362 284 LFEIHQVERAFKLFD 298 (487)
Q Consensus 284 ~~~~~~~~~a~~~~~ 298 (487)
|...++|.+|.++-.
T Consensus 888 Cv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666667766666544
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.17 E-value=8.1e-05 Score=55.81 Aligned_cols=98 Identities=8% Similarity=-0.089 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
......+...+...|++++|.++|+.+...+ +.+..-|..|..++-..|++++|+..|......+. -++..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~ 106 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHH
Confidence 3345556666778888888888888887766 66777788888888888888888888888777653 467777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
..+..++...|+.+.|.+.|+..+..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888888888877654
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.002 Score=55.85 Aligned_cols=258 Identities=13% Similarity=0.023 Sum_probs=117.1
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
+|..|+..+..+++..+. ++..|..-+..+...|++++|.--.+.-.+.. +-.........+++...++..+|.+.++
T Consensus 64 ~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred hHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhh
Confidence 455677777777776533 45555555666666677776665555444331 1111122223333333333333333332
Q ss_pred H------------HHhCCCCCccccccchHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011362 83 E------------MANGNGEFGVVCEPNTVTYTTI-IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD 149 (487)
Q Consensus 83 ~------------~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 149 (487)
. ....-+.. .-+|.-..+..+ ..++.-.|+.+.|.++--.+++... .+......-..++...++
T Consensus 142 ~~~~~~~anal~~~~~~~~s~--s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 142 SKQAYKAANALPTLEKLAPSH--SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDN 218 (486)
T ss_pred hhhhhHHhhhhhhhhcccccc--cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccc
Confidence 1 11100000 001222223222 2344456666666666555555421 122222222334445566
Q ss_pred hhhHHHHHHHHHHcCCCCChhh-------------HHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHH
Q 011362 150 WNEAKRLFIEMMDQGVQPNVVT-------------FNVIMDELCKNGKMDEASRLLDLMIQHG---VRPDAFTYNTLLDG 213 (487)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~ 213 (487)
.+.+...|.+.+..+ |+-.. +..-..-..+.|.+..|.+.|.+.+... ..++...|......
T Consensus 219 ~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 219 ADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred hHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 677777776666543 22111 1111223345556666666665555432 23344445555555
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 214 FCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
..+.|+..+|+.--+...+.+ +.-...+..-..++...++|++|.+-+++..+.
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666655555554432 111222233334444555566666665555543
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.16 E-value=0.00019 Score=56.82 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=74.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
...+..+...+...|++++|+..|+++.+....+. ...+..+..++.+.|++++|...+++..+.. +.+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~ 107 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-------PKQPS 107 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHH
Confidence 55678888899999999999999999987643322 3578889999999999999999999999875 55677
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELL 122 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~ 122 (487)
.+..+..++...|+...+..-+
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCH
Confidence 7888888888888765544433
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.15 E-value=4.8e-05 Score=67.84 Aligned_cols=86 Identities=10% Similarity=-0.048 Sum_probs=78.0
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++..+ +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++++|+..
T Consensus 15 ~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 378999999999999987 4578889999999999999999999999999875 55677899999999999999999999
Q ss_pred HHHHHhCC
Q 011362 81 FEEMANGN 88 (487)
Q Consensus 81 ~~~~~~~~ 88 (487)
|+...+..
T Consensus 93 ~~~al~l~ 100 (356)
T PLN03088 93 LEKGASLA 100 (356)
T ss_pred HHHHHHhC
Confidence 99999865
No 154
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.15 E-value=0.00012 Score=57.77 Aligned_cols=113 Identities=13% Similarity=0.024 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHH
Q 011362 4 VSHGFVVLGRILKSCFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP--DVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+..+...+..+++.... .....|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555666666533222 236677888899999999999999999998764222 234788899999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHH-------hcCChhHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLC-------KEGFVDKAKELLL 123 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~ 123 (487)
+++..... +.....+..+..++. ..|+++.|...++
T Consensus 95 ~~~Al~~~-------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERN-------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhC-------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 99999865 445566677776666 5666654444443
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.15 E-value=5.8e-05 Score=67.30 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=81.2
Q ss_pred CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhH
Q 011362 270 IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN--GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAY 347 (487)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 347 (487)
.+.+......++..+....+.+.+..++-+.... ....-+.+...+++.|...|..++++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666677777777777766654 12222344557777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND 392 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (487)
+.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777666555555555555444444443
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.14 E-value=9.1e-05 Score=66.07 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=71.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
-...+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..++++.... +.+...|..+..+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P~~~~a~~~lg~~ 79 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-------PSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHH
Confidence 3566677788888888888888765 4556677777788888888888888888888765 5567778888888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 011362 109 LCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~ 128 (487)
|...|++++|+..|++..+.
T Consensus 80 ~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHh
Confidence 88888888888888887765
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00025 Score=58.97 Aligned_cols=115 Identities=15% Similarity=0.050 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc---CChHHHHHHH
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT---SHTIVALNLF 81 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~ 81 (487)
++...-++.-+..+ |.|...|-.|..+|...|++..|...|.+..+.. ++++..+..+..++..+ ....++..+|
T Consensus 139 ~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34444555555554 3456666666666666666666666666665553 44455555554444322 2234556666
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+++...+ +.++.+...|...+...|++.+|...|+.|.+.
T Consensus 217 ~~al~~D-------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALD-------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666654 455555555666666666666666666666654
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.10 E-value=0.00014 Score=53.58 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=60.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHhhH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIK--PNVVTY 137 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ 137 (487)
++..++..+.+.|++++|.+.|+.+.+..+. .+.....+..+..++.+.|+++.|...|+.+...... .....+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 4555666667777777777777777654411 0112345556667777777777777777776654211 123455
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
..+..++...|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 66666666777777777777776665
No 159
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=6.7e-06 Score=45.08 Aligned_cols=33 Identities=39% Similarity=0.859 Sum_probs=15.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN 413 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 413 (487)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0037 Score=54.27 Aligned_cols=267 Identities=12% Similarity=0.015 Sum_probs=146.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
........+.+..++..|+..+..+++.. +.+...|..-+..+...|++++|.--.++-.+..+. .......
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-------~~k~~~r 122 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-------FSKGQLR 122 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-------ccccccc
Confidence 34445566777888999999999988875 445556666666777778888887776665554421 1223333
Q ss_pred HHHHHHhcCChhHHHHHHH---------------HHHhCCC-CCCHhhHHHH-HHHHHhcCChhhHHHHHHHHHHcCCCC
Q 011362 105 IIDGLCKEGFVDKAKELLL---------------QMKDKNI-KPNVVTYTSV-IRGFCYAKDWNEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (487)
..+++...++..+|.+.++ .+..... +|.-..|..+ ..++.-.++.++|.+.-...++....
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~- 201 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT- 201 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-
Confidence 3333333333333333322 1111111 1223334333 23455677888887777766664211
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFT-------------YNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
+......-..++.-.++.+.+...|++.+..+ |+... +..-..-..+.|.+..|.+.|.+.+..+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 22222222234455667788888887776653 22211 1112233456677777777777776542
Q ss_pred ---CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011362 235 ---CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN 303 (487)
Q Consensus 235 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (487)
..++...|........+.|+..+|+.--......+.. -...+..-..++...++|++|.+-++...+.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2334455555566666777777777776666553110 1112233334455667777777777766654
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=0.00013 Score=62.67 Aligned_cols=131 Identities=11% Similarity=0.070 Sum_probs=97.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR-TSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
.+|..+++...+.+..+.|..+|.++++.+ ..+..+|......-.. .++.+.|.++|+...+. ++.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------CCCCHHHH
Confidence 468888888888888999999999998543 3345556555555333 56667799999998876 47788888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV---VTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
...+..+...|+.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998876 33222 37888888888888888888888888764
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.07 E-value=0.0066 Score=53.48 Aligned_cols=129 Identities=14% Similarity=0.065 Sum_probs=76.5
Q ss_pred HhcCC-HHHHHHHHHhccCCCCCCcHHHHHHHHH----HHHc---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 011362 355 CKSGR-LEIALELFRSLPCGVLVPNVVTYSIMIG----GLCN---DGQMDKARDLFLDMEENAVVPN----VITFDMLIR 422 (487)
Q Consensus 355 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~ 422 (487)
.+.|. -++|.++++.+.+-. +-|...-|.+.. +|.+ ...+.+-..+-+-+.+.|++|- ...-+.|..
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 34444 677888887776531 223333332221 2222 1223333333333445566653 334455554
Q ss_pred H--HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccchhhhhhhhccC
Q 011362 423 G--FIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVHEQQEEVDESNV 486 (487)
Q Consensus 423 ~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
+ +...|++.++.-.-.-+.+ +.|++.+++.++-++....++.+|.+.+...|..++..++++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskv 532 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKV 532 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHH
Confidence 4 4467888887766665655 678888888888888888888888888777777666665543
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=8.4e-05 Score=52.26 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV 140 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 140 (487)
+..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++...... +.+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHH
Confidence 4455666666777777777777776654 3444566667777777777777777777766553 2244566666
Q ss_pred HHHHHhcCChhhHHHHHHHHHH
Q 011362 141 IRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 141 ~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...+...|++++|...+....+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 6677777777777777766654
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=8.7e-05 Score=61.20 Aligned_cols=131 Identities=14% Similarity=0.049 Sum_probs=93.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
..-+.+.++|++|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+.....+ |....+|..|..+|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-------p~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-------PHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------hHHHHHHHHHHHHH
Confidence 455677889999999999988874 4566667778888889999999988888888876 55678888999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCChh---hHHHHHHHHHHcCCCCChh
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF-CYAKDWN---EAKRLFIEMMDQGVQPNVV 170 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~~~~~~ 170 (487)
...|++++|++.|++.++. .|+-.+|..=+... -+.+... .+...++-....|..|+..
T Consensus 160 ~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999888888875 56666665544433 2333333 4444454444445445543
No 165
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=1.1e-05 Score=43.83 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=16.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVP 412 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 412 (487)
+|+.++.+|.+.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.03 E-value=0.00092 Score=55.94 Aligned_cols=186 Identities=8% Similarity=-0.038 Sum_probs=114.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFT---YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
+...+......+...|++++|++.|+.+....... ... ...++.++.+.+++++|...+++..+..|.. +..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~----~~~ 105 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH----PNI 105 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC----Cch
Confidence 45555556777788999999999999999874222 222 3467788899999999999999999987531 222
Q ss_pred hHHHHHHHHHHHhcC---------------C---hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 99 TVTYTTIIDGLCKEG---------------F---VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
..++-.++.+....+ + ...|+..|+.+++. -|+. .-..+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFL 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHH
Confidence 333333333321111 2 23566677777665 2332 1223333333333
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH--GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
... =...-..+.+.|.+.|.+..|..-++.+++. +.+........+..+|...|..++|......+.
T Consensus 171 ~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 171 KDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 221 0011124566777888888888888887765 222334556667788888888888877766543
No 167
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1.2e-05 Score=44.05 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 011362 416 TFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA 449 (487)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 449 (487)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 168
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1.1e-05 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP 56 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 56 (487)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998876
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0061 Score=51.07 Aligned_cols=56 Identities=7% Similarity=0.061 Sum_probs=25.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcC--CCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLM 195 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 195 (487)
+.+.|.+.|.+..|..-++.+++.- .+........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4444555555555555555554431 1112223334444555555555555444433
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.01 E-value=0.0019 Score=49.37 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=108.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
+..+..+.=|++...+-..+-... .|++.-...|..++...|++.+|...|++..... +..+......+.++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~--ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~------fA~d~a~lLglA~A 133 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI--APTVQNRYRLANALAELGRYHEAVPHYQQALSGI------FAHDAAMLLGLAQA 133 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc------cCCCHHHHHHHHHH
Confidence 344444555565555444333332 5777777788888899999999999999888755 56778888888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 187 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (487)
....+++..|...++.+.+... ..++.+...+.+.+...|...+|...|+.....- |+...-......+.+.|+..+
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhH
Confidence 8888999999999888876531 0134455667788888999999999999888763 444443344456667776666
Q ss_pred HHHHHHHH
Q 011362 188 ASRLLDLM 195 (487)
Q Consensus 188 a~~~~~~~ 195 (487)
+..-+..+
T Consensus 212 a~aq~~~v 219 (251)
T COG4700 212 ANAQYVAV 219 (251)
T ss_pred HHHHHHHH
Confidence 55444333
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.00013 Score=62.70 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh-CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 011362 276 IHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK-NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL 354 (487)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (487)
+|..++...-+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666667777776666432 2233444444443222 44555566666666654 355566666666666
Q ss_pred HhcCCHHHHHHHHHhccCCCCCCcH---HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 355 CKSGRLEIALELFRSLPCGVLVPNV---VTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666654 23222 3566666655666666666666666655
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.014 Score=54.42 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=105.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH----------HHHHHccCChHHHHHHHHHHHhCCC
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTL----------VNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
.|.+..|..|.......-.++-|...|-+.... +.......| ...-.--|++++|.+++-.+.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 578999999999988888899898888776543 222111111 112233588999999888776654
Q ss_pred CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 011362 90 EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN 168 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 168 (487)
..+..+.+.|++-...++++.--.. .-..-...|+.+...+.....|++|.+.|..--.
T Consensus 765 --------------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------ 824 (1189)
T KOG2041|consen 765 --------------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------ 824 (1189)
T ss_pred --------------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 3455666777777666665421100 0011234678888888888888888887765321
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 227 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (487)
....+.++.+..++++...+...+ +-+....-.+..++.+.|.-++|.+.+
T Consensus 825 ---~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 825 ---TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ---hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 123455555555555555444433 224444555566666666666665554
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.97 E-value=0.00046 Score=59.61 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=64.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE---PD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
...|......|...|++++|.+.|.+....... +. ...|.....+|. .+++++|++.+++........|. ...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~-~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGR-FSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCc-HHH
Confidence 445777777888888888888888887543211 11 112333344443 33666776666665432100000 011
Q ss_pred chHHHHHHHHHHHhc-CChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 98 NTVTYTTIIDGLCKE-GFVDKAKELLLQMKDK----NIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
-...+..+...|... |+++.|.+.|++.... +.+ .-...+..++..+.+.|++++|.++|++...
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123444455555555 5555555555554321 100 0112334444555555555555555555543
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.97 E-value=0.00078 Score=48.80 Aligned_cols=109 Identities=22% Similarity=0.137 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.++++.....+.. +.+......+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~----~~~~~l~~f~ 81 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD----ELNAALRVFL 81 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----cccHHHHHHH
Confidence 356667778888888888888887764433 2355667777778888888888888777653110 1123333344
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF 144 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 144 (487)
..++...|+.++|++++-..... +...|..-|..|
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45667778888888777655432 333444444444
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.00047 Score=49.94 Aligned_cols=98 Identities=20% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCccchHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCh
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD--AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 74 (487)
+|+.++|+.+|++.+..|.... ...+..+...+...|++++|+.++++..... |+ ......+..++...|+.
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCH
Confidence 5899999999999999886644 4567788999999999999999999998763 33 22333345577889999
Q ss_pred HHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 75 IVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
++|++.+-.... ++...|..-|..|.
T Consensus 92 ~eAl~~~l~~la----------~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 92 KEALEWLLEALA----------ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 999999877654 23346666666654
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=0.0067 Score=52.50 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----cH-HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC--CCC--hHh
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAA-----DT-WTYRTFIDGLCKNGYIVEAVELFHTLRILKC--EFD--IRA 346 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~ 346 (487)
+..++..+.+.|++++|..+|+++....... +. ..+...+-++...|++..|...+++.....+ ..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 3344445555555555555555554432111 11 1122223344455666666666666553321 111 223
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHhcc
Q 011362 347 YNSLIDGLCK--SGRLEIALELFRSLP 371 (487)
Q Consensus 347 ~~~l~~~~~~--~g~~~~a~~~~~~~~ 371 (487)
...|+.++-. ...+..+..-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4444555432 223445555554444
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00019 Score=59.34 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF 144 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 144 (487)
..-+.+.++|++|+..|.++++.. |.|+..|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHH
Confidence 445678999999999999999976 7788899999999999999999999999988864 22566899999999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011362 145 CYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 178 (487)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (487)
...|++++|++.|++.++. .|+-.+|-.=+..
T Consensus 160 ~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 9999999999999998874 6666666554443
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0014 Score=61.28 Aligned_cols=143 Identities=9% Similarity=-0.009 Sum_probs=90.9
Q ss_pred CCCcHHhHHHHHHHHHh--C---CCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHhcc
Q 011362 305 VAADTWTYRTFIDGLCK--N---GYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS--------GRLEIALELFRSLP 371 (487)
Q Consensus 305 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 371 (487)
.+.+...|...+++... . +....|..+|++..+.. |.....+..+..++... .+...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45566677777665432 2 23667788888887764 33444555444433221 12334444444433
Q ss_pred CC-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 011362 372 CG-VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDAS 450 (487)
Q Consensus 372 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 450 (487)
.. ..+.+...|..+.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++...+ |...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence 32 123345667777666667888999999998888854 677788888888888899999998888887743 5544
Q ss_pred HH
Q 011362 451 IV 452 (487)
Q Consensus 451 ~~ 452 (487)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.88 E-value=0.00034 Score=48.61 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCC--------hhhHHHHHHHHHHcCCCCChhhHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNI-KPNVVTYTSVIRGFCYAKD--------WNEAKRLFIEMMDQGVQPNVVTFN 173 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~ 173 (487)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- .-+.+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 7888888888887765432 335566777777777777777777
Q ss_pred HHHHHHHh
Q 011362 174 VIMDELCK 181 (487)
Q Consensus 174 ~l~~~~~~ 181 (487)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77666543
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.87 E-value=5.6e-05 Score=49.07 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=35.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
.|++++|++.|+.++... |.+..++..++.+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 367777777777777765 336666667777777777777777777777665
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.87 E-value=0.00094 Score=52.91 Aligned_cols=86 Identities=13% Similarity=-0.007 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFD--IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGG 388 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (487)
.+..+...+...|++++|...|++.......+. ...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344555555556666666666666554321111 2345555555555666666666665555432 2233444444555
Q ss_pred HHccCCHHH
Q 011362 389 LCNDGQMDK 397 (487)
Q Consensus 389 ~~~~g~~~~ 397 (487)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555554433
No 182
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.025 Score=53.94 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=49.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 384 IMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
-++..+.+..+++++..+.+..-+. ++..|..+++.+.+.+..+.-.+...+.++.=...+...-..+++.+++.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 3556677778888888877766543 788888999989888866555554444442211112222345567777777
Q ss_pred cc
Q 011362 464 IS 465 (487)
Q Consensus 464 ~~ 465 (487)
..
T Consensus 786 ~l 787 (933)
T KOG2114|consen 786 TL 787 (933)
T ss_pred ce
Confidence 66
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.86 E-value=0.00054 Score=54.07 Aligned_cols=115 Identities=16% Similarity=-0.014 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhH
Q 011362 39 IMEAAALFTKLRVF-GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDK 117 (487)
Q Consensus 39 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 117 (487)
+..+...+..+.+. +.......+..++..+...|++++|+..|++.....+. ......++..+..++...|++++
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID----PYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHHcCCHHH
Confidence 44444445454322 11122344566666777778888888887777654310 01123467777777777777888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHH-------hcCChhhHHHHHH
Q 011362 118 AKELLLQMKDKNIKPNVVTYTSVIRGFC-------YAKDWNEAKRLFI 158 (487)
Q Consensus 118 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~ 158 (487)
|+..++...... +....++..+...+. ..|+++.|...++
T Consensus 91 A~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 91 ALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 877777776542 223444555555554 4555554444333
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.84 E-value=8.8e-05 Score=48.14 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=48.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+.+.|++++|++.|+++.... +.+..++..++.+|.+.|++++|.++++++....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 357899999999999999885 5578888899999999999999999999999865
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.82 E-value=0.0024 Score=59.82 Aligned_cols=140 Identities=8% Similarity=-0.001 Sum_probs=91.8
Q ss_pred CCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc--------CChHHHHHHHHH
Q 011362 17 SCFTPDAVTFTSLIKGLCAE-----SRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT--------SHTIVALNLFEE 83 (487)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~ 83 (487)
...+.+..+|...+++.... ++...|+.+|+++.+.. +.....+..+..++... .+...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 33566788888888875432 23778999999999874 33344454443333221 112334444444
Q ss_pred HHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 84 MANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
...... .+.+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 410 a~al~~-----~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPE-----LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhccc-----CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333210 13455677777766777788888888888888764 57778888888888888888888888888775
Q ss_pred C
Q 011362 164 G 164 (487)
Q Consensus 164 ~ 164 (487)
+
T Consensus 483 ~ 483 (517)
T PRK10153 483 R 483 (517)
T ss_pred C
Confidence 3
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=0.00011 Score=47.86 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=58.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCC
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-HTIVALNLFEEMANGN 88 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 88 (487)
++.+|..+...+...|++++|+..|++.++.. +.+...+..+..++...| ++++|++.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999986 557778999999999999 7999999999988743
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.80 E-value=0.00056 Score=59.04 Aligned_cols=270 Identities=15% Similarity=0.121 Sum_probs=161.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDV----FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
.-+++.|+....+.+|+.+++.| ..|. .+|..|..+|.-.+++++|+++...=.......|. -.-...+...|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-klGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-KLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-hhcccccccccc
Confidence 45789999999999999999887 3343 35777888888899999998864321100000000 001123334455
Q ss_pred HHHHhcCChhHHHHHHHH----HHhCCCC-CCHhhHHHHHHHHHhcCC--------------------hhhHHHHHHHHH
Q 011362 107 DGLCKEGFVDKAKELLLQ----MKDKNIK-PNVVTYTSVIRGFCYAKD--------------------WNEAKRLFIEMM 161 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 161 (487)
..+--.|.+++|+....+ ..+.|-+ .....+..+...|...|+ ++.|.+.|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 555556777776554332 2222211 123455567777765543 233444443322
Q ss_pred H----cCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 162 D----QGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLM----IQHGVR-PDAFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 162 ~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
+ .|-. .--..|..|...|.-.|+++.|+...+.- .+.|.. .....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 1100 01124555666666778899888765432 223322 234567778888888999999999887753
Q ss_pred H----cCC-CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC-----CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 232 S----MGC-KHTVFSYSILINGYCKNKEIEGALSLYSEMLSK-----GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301 (487)
Q Consensus 232 ~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (487)
. .|- .....+...|.+.|.-..++++|+..+.+-+.- +..-....+..+..++...|..++|+.+.+..+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 221 223445667788888888899999887764431 122245677788889999999999988776554
Q ss_pred H
Q 011362 302 R 302 (487)
Q Consensus 302 ~ 302 (487)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=0.00012 Score=46.96 Aligned_cols=59 Identities=19% Similarity=0.108 Sum_probs=46.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+...+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+.+.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4667788888888888888888875 4466778888888888888888888888887754
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.78 E-value=0.0058 Score=49.82 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEP--DVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
-..+..+...|++.+|+..|+.+....... -..+...++.++.+.|+++.|...++...+..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 334444555555555555555555442111 12233444555555555555555555555443
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.78 E-value=0.021 Score=49.47 Aligned_cols=285 Identities=11% Similarity=0.035 Sum_probs=155.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTLVN--GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
-.|+-..|.++-.+..+. +..|...+..++. .-.-.|+++.|.+-|+.|.... .....-...|.-.-.+.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-------EtRllGLRgLyleAqr~ 167 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-------ETRLLGLRGLYLEAQRL 167 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-------HHHHHhHHHHHHHHHhc
Confidence 456777777766665422 1334333333333 3345688888888888887632 11112233333344566
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhH--HHHHHHH---HhCCChH
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG-VQPNVVTF--NVIMDEL---CKNGKMD 186 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~~~~~~ 186 (487)
|+.+.|..+-+..-..- +.-...+...+...+..|+|+.|+++.+.-.... +.++..-- ..|+.+- .-..+..
T Consensus 168 GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 77777777776665442 2234566677777778888888888877655432 23332211 1122111 1122445
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHH
Q 011362 187 EASRLLDLMIQHGVRPDAF-TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEM 265 (487)
Q Consensus 187 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (487)
.|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |.+..+.. ..+.+.|+ .+..-++..
T Consensus 247 ~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 247 SARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKRA 318 (531)
T ss_pred HHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHHH
Confidence 555554444443 34422 22233466777888888888888777663 33333222 22334444 333333332
Q ss_pred HHC-CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh-CCCHhHHHHHHHHHHHc
Q 011362 266 LSK-GIK-PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK-NGYIVEAVELFHTLRIL 338 (487)
Q Consensus 266 ~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 338 (487)
... ..+ .+..+...+..+....|++..|..--+.... ..|....|..+.+.-.. .|+-.++...+.+..+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 221 112 2445566667777777888777766666555 35666677666665443 48888888887777654
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0019 Score=53.88 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=67.8
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND---GQMDKARDLFLDMEENAVVPNVITF 417 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 417 (487)
|.|...|..|...|...|+++.|..-|....+.. ++|+..+..+..++..+ ....++..+|+++..... -|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 5677777777777777777777777777776652 45566666666655432 235567777777776532 255566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 418 DMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
..|...+...|++.+|...|+.|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666667777777777777777777654
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.76 E-value=0.0057 Score=49.89 Aligned_cols=177 Identities=13% Similarity=0.022 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCH-h
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIK-PNV-V 135 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~ 135 (487)
...+...+..+...|++.+|++.|+.+....+. .+........++.++.+.|+++.|...++.+.+.-.. |.. .
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 344455666777889999999999988876532 1334566677888888889999999998888765211 111 1
Q ss_pred hHHHHHHHHHhc-----------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 011362 136 TYTSVIRGFCYA-----------KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA 204 (487)
Q Consensus 136 ~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 204 (487)
++-.++.++... +...+|...|+.++. -|=.+.-..+|...+..+... -.
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~~----la 141 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRNR----LA 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHHH----HH
Confidence 222222222111 112344444444443 333333444444444433321 01
Q ss_pred HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHccCCHhHH
Q 011362 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT---VFSYSILINGYCKNKEIEGA 258 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 258 (487)
..-..+...|.+.|.+..|..-++.+.+.- |.+ ......++.+|.+.|..+.+
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 111224566777777777777777776651 222 23445667777777776644
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.76 E-value=0.00027 Score=60.88 Aligned_cols=265 Identities=14% Similarity=0.068 Sum_probs=163.3
Q ss_pred CCccchHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHH--h--cCCC-CCHHHHHHHHHHHHcc
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD----AVTFTSLIKGLCAESRIMEAAALFTKLR--V--FGCE-PDVFTYTTLVNGLCRT 71 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--~~~~-~~~~~~~~l~~~~~~~ 71 (487)
+|+....+.+|+.+++.|.. | +.+|..|..+|.-.+++++|+++...=+ . .|-+ -...+...|...+--.
T Consensus 30 ~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred ccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 57888899999999999843 5 4456777888888999999988654311 1 1111 1222333455566667
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHh----
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF--------------------VDKAKELLLQMKD---- 127 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~---- 127 (487)
|.+++|+-...+-.....+.|.-+ .....+..+..+|...|. ++.|.+.|.+=++
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888766544332221111111 123455556666655442 3344444433211
Q ss_pred CCCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHH----cCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHH----
Q 011362 128 KNIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD----QGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQ---- 197 (487)
Q Consensus 128 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 197 (487)
.|-. .--..|..|...|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|+++.|.+.|+....
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE 267 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence 1100 1223566777777788999999877654322 2221 1234567788899999999999998876543
Q ss_pred CCC-CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHH----cC-CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 198 HGV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES----MG-CKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 198 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
.|- .........|...|.-..++++|+.++.+-.. .+ ..-....+..|..+|...|..++|+.+....++
T Consensus 268 lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 221 22345566788888888889999988765322 11 122346778899999999999999988776554
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.73 E-value=0.025 Score=48.99 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=176.4
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcCCCHh
Q 011362 146 YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD--ELCKNGKMDEASRLLDLMIQHGVRPDAF--TYNTLLDGFCLTGRVN 221 (487)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 221 (487)
-.|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 356777777766655432 2334444444444 334578899999999888763 2211 1222333334778888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC-CccChh--hHHHHHHHH---HhcCCHHHHHH
Q 011362 222 HAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPDVV--IHNTLFVGL---FEIHQVERAFK 295 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~a~~ 295 (487)
.|..+-+..-... +.-...+...+...|..|+|+.|+++++.-.... +.++.. .-..|+.+- .-..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888877776553 4456778888888999999999999988766532 223321 111222111 11234555665
Q ss_pred HHHHHHHcCCCCcHH-hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccC-C
Q 011362 296 LFDEMQRNGVAADTW-TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPC-G 373 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~ 373 (487)
.-.+..+ ..||.. .-..-..++.+.|+..++-.+++.+-+. .|.+.++... .+.+.|+.. ..-+++... .
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gdta--~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGDTA--LDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCCcH--HHHHHHHHHHH
Confidence 5555554 345532 2334456788999999999999999876 4555554333 344566532 222222211 0
Q ss_pred CC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhc
Q 011362 374 VL-VPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRI-NEPSKVIELLHKMKEI 443 (487)
Q Consensus 374 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 443 (487)
.+ +.+..+...+..+-...|++..|..--+.... ..|....|..|.+.-... ||..++.+++-+.+..
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 01 33566777788888899999998887777766 468888888888776544 9999999999998864
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=5.4e-05 Score=39.97 Aligned_cols=28 Identities=39% Similarity=0.789 Sum_probs=13.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
+|+.++.+|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444555555555555555555554443
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.0012 Score=46.00 Aligned_cols=73 Identities=12% Similarity=0.341 Sum_probs=38.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 389 LCNDGQMDKARDLFLDMEENAV-VPNVITFDMLIRGFIRIN--------EPSKVIELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
+...+++...-.+|+.+.+.|+ -|+..+|+.++.+..+.. +.-..+.+|+.|+..+++|+..+|..++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3334555555555555555555 455555555555444321 1223455666666666666666666666555
Q ss_pred Hh
Q 011362 460 AK 461 (487)
Q Consensus 460 ~~ 461 (487)
.+
T Consensus 115 lk 116 (120)
T PF08579_consen 115 LK 116 (120)
T ss_pred HH
Confidence 43
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00026 Score=45.39 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+...+...|++++|+..|+.+.+.. |.+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666677777777777776665 456666666777777777777777777666554
No 198
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=7.1e-05 Score=39.48 Aligned_cols=31 Identities=23% Similarity=0.628 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011362 415 ITFDMLIRGFIRINEPSKVIELLHKMKEINV 445 (487)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (487)
.+|+.++++|.+.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998774
No 199
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.61 E-value=0.044 Score=48.57 Aligned_cols=434 Identities=12% Similarity=0.104 Sum_probs=235.0
Q ss_pred CccchHHHHHHHHHhCCCCCCHH------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccCC
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAV------TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG--LCRTSH 73 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~ 73 (487)
|++.+|.++|-++.+.- ..++. .-+.++++|.. ++.+.....+..+.+. .| ...|..+..+ +-+.++
T Consensus 20 ~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred hhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhh
Confidence 67889999999988764 22322 23456666654 4555555555555544 23 2334444433 458899
Q ss_pred hHHHHHHHHHHHhCCCCCc-cccc-------cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHhhHHHHH
Q 011362 74 TIVALNLFEEMANGNGEFG-VVCE-------PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN----IKPNVVTYTSVI 141 (487)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 141 (487)
+.+|++.+......-.... .-.. ++...=+..+.++...|++.++..+++++...= ...+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 9999999887766521000 0000 011122456778889999999999999887643 336888888755
Q ss_pred HHHHhc--------CCh-------hhHHHHHHHHHHc------CCCCChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHC
Q 011362 142 RGFCYA--------KDW-------NEAKRLFIEMMDQ------GVQPNVVTFNVIMDELCKNG--KMDEASRLLDLMIQH 198 (487)
Q Consensus 142 ~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 198 (487)
-.+.+. ... +.+.-..+++... .+-|....+..++....-.. +..--.++++.-...
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 544332 111 2222222222211 12233333333333222111 111122222222223
Q ss_pred CCCCCHH-HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC
Q 011362 199 GVRPDAF-TYNTLLDGFCLTGRVNHAKELFVSMESMGCK----HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 273 (487)
Q Consensus 199 ~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 273 (487)
-+.|+.. +...+...+.. +.+++..+-+.+....+. .-..++..++....+.++...|.+.+.-+...+ |+
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--Cc
Confidence 3444432 23334444443 455555555544433211 123567788888889999999988888776643 22
Q ss_pred hhhHHH-------HHHHHH-hcC---CHHHHHHHHHHHHHcCCCCcH-HhHHHH---HHHHHhCCC-HhHHHHHHHHHHH
Q 011362 274 VVIHNT-------LFVGLF-EIH---QVERAFKLFDEMQRNGVAADT-WTYRTF---IDGLCKNGY-IVEAVELFHTLRI 337 (487)
Q Consensus 274 ~~~~~~-------l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~l---~~~~~~~~~-~~~a~~~~~~~~~ 337 (487)
...-.. +-...+ .-. +...-+.+++.+...++ |. .....+ +.-+-+.|. -++|..+++.+..
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 221111 111222 111 12233344455544432 22 222222 233445555 7889999998886
Q ss_pred cCCCCChHhHHHHHH----HHHh---cCCHHHHHHHHHhccCCCCCCc----HHHHHHHHHH--HHccCCHHHHHHHHHH
Q 011362 338 LKCEFDIRAYNSLID----GLCK---SGRLEIALELFRSLPCGVLVPN----VVTYSIMIGG--LCNDGQMDKARDLFLD 404 (487)
Q Consensus 338 ~~~~~~~~~~~~l~~----~~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~ 404 (487)
.. +-|...-|.+.. +|.+ ...+..-..+-.-+.+.|++|- ...-|.+..+ +..+|++.++.-.-..
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 54 445544444332 2222 1223344444444555666653 3445555554 4578999998877666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 405 MEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..+++.
T Consensus 488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 665 6799999999998889999999999998765 677777754
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.60 E-value=0.0022 Score=54.10 Aligned_cols=99 Identities=14% Similarity=-0.001 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
|........+.|++++|+..|+.+++..+... ..++..++.+|...|++++|...|+.+.+..+. .+.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----SPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CcchhHHHH
Confidence 44333333556777777777777776631111 245666777777777777777777777765421 123345555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.++.++...|+.+.|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666666777777777777777664
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.59 E-value=0.02 Score=44.12 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=114.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG 143 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 143 (487)
+..+....=+++....-..+-.. ..|+...-..|..++.+.|+..+|...|++...--.--|......+.++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~--------~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A 133 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA--------IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA 133 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh--------hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence 33344444455554444333333 3577888888999999999999999999998865455577788889999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH
Q 011362 144 FCYAKDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 222 (487)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (487)
....+++..|...++++.+.... .++.+...+.+.+...|.+.+|..-|+..... -|+..........+.+.|+.++
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhH
Confidence 99999999999999999876421 13345567788999999999999999999886 4555554445666778887776
Q ss_pred HHHHHHHH
Q 011362 223 AKELFVSM 230 (487)
Q Consensus 223 a~~~~~~~ 230 (487)
+..-+..+
T Consensus 212 a~aq~~~v 219 (251)
T COG4700 212 ANAQYVAV 219 (251)
T ss_pred HHHHHHHH
Confidence 66544444
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00041 Score=45.10 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG-FVDKAKELLLQMKDK 128 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 128 (487)
++.+|..+...+...|++++|+..|++..+.+ |.+...|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888889999999999999999999876 667888999999999998 799999999887764
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.55 E-value=0.036 Score=51.35 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 119 KELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
+.-+++++++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344566677776666543 44556667778888777764
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.47 E-value=0.0068 Score=46.52 Aligned_cols=75 Identities=11% Similarity=0.226 Sum_probs=55.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHHHHH
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-----EINVMPDASIVSIV 455 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 455 (487)
+...++..+...|++++|..+.+++.... +.+...|..++.+|...|+...|.+.|+++. +.|+.|++.+-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 44566777888999999999999998864 3377889999999999999999999999875 56999998876554
Q ss_pred H
Q 011362 456 V 456 (487)
Q Consensus 456 ~ 456 (487)
-
T Consensus 143 ~ 143 (146)
T PF03704_consen 143 R 143 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.47 E-value=0.0036 Score=52.89 Aligned_cols=86 Identities=13% Similarity=0.037 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHhccCCCCCCc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 011362 355 CKSGRLEIALELFRSLPCGVLVPN----VVTYSIMIGGLCNDGQMDKARDLFLDMEENAV--VPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 428 (487)
.+.|++++|...|+.+++. .|+ ...+..+..+|...|++++|...|+.+.+.-. +.....+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4456666666666666654 222 23555666666677777777777777665311 112334444555566667
Q ss_pred ChhHHHHHHHHHHh
Q 011362 429 EPSKVIELLHKMKE 442 (487)
Q Consensus 429 ~~~~a~~~~~~~~~ 442 (487)
+.++|...|+++.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776665
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.45 E-value=0.0021 Score=50.85 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=53.5
Q ss_pred CCChHhHHHHHHHHHh-----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc----------------CCHHHHH
Q 011362 341 EFDIRAYNSLIDGLCK-----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND----------------GQMDKAR 399 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~ 399 (487)
..+-.+|..+++.|.+ .|..+=....+..|.+.|+.-|..+|+.|+.++=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566777777777754 355666666677777777777777777777776431 1123355
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011362 400 DLFLDMEENAVVPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (487)
+++++|...|+-||..++..++..+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 55555555555555555555555554443
No 207
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.0027 Score=48.10 Aligned_cols=85 Identities=11% Similarity=-0.059 Sum_probs=73.8
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|..+|.-+.-.+ +.+...|..|..++...+++++|+..|......+ ..|+..+.....++...|+.+.|...
T Consensus 50 ~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 489999999999999887 4578888999999999999999999999987765 45666677788999999999999999
Q ss_pred HHHHHhC
Q 011362 81 FEEMANG 87 (487)
Q Consensus 81 ~~~~~~~ 87 (487)
|+.....
T Consensus 128 f~~a~~~ 134 (165)
T PRK15331 128 FELVNER 134 (165)
T ss_pred HHHHHhC
Confidence 9998874
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.0039 Score=47.87 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhh
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-----QGVQPNVVT 171 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 171 (487)
....++..+...|+++.|..+.+.+.... |.+...|..++.++...|+...|.+.|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44445555555566666666665555543 34555566666666666666666655555432 255555444
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.40 E-value=0.0065 Score=48.23 Aligned_cols=105 Identities=21% Similarity=0.280 Sum_probs=66.0
Q ss_pred ccchHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 011362 96 EPNTVTYTTIIDGLCK-----EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV 170 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 170 (487)
..+..+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|+.++=+ |.+. |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 3566777777777764 46677777788888888888888888888887654 2221 110
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 171 TFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
.+..+..-| -.+-+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 011111111 12335567777777777777777777777777765554
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.40 E-value=0.085 Score=46.82 Aligned_cols=142 Identities=17% Similarity=0.232 Sum_probs=95.2
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHH-HHHHHHH
Q 011362 312 YRTFIDGLCKNGYIVEAVELFHTLRILK-CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTY-SIMIGGL 389 (487)
Q Consensus 312 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~ 389 (487)
+...+....+..-.+.|..+|-++.+.+ ..+++.++++++..++ .|++..|..+|+.-... .||...| +-.+..+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 3444555556667788888888888776 4567777888887665 57788888888765543 3444333 4455666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 390 CNDGQMDKARDLFLDMEENAVVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
...++-..|..+|+..+.+ +..+ ...|..++.--..-|+...+..+-++|.+ ..|-..+.......+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 7778888888888866543 2223 45778888777788888888888888876 346555555554444
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.0018 Score=42.64 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=46.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
...|.+.+++++|+++++++...+ +.+...+.....++...|++++|.+.|+.+.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356788888888888888888875 5566777788888888888888888888888765
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.06 Score=44.07 Aligned_cols=129 Identities=11% Similarity=-0.024 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHH-----HHH
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNS-----LID 352 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~ 352 (487)
..++..+...+.+.-....+.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..+....+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444455555555555555555554444555555555555566666666666665543322222222222 122
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 353 GLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
.|.-++++..|...+.++.... +.++...|.-.-+..-.|+...|.+.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333445555555555555432 23333344444444445555556555555555
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=97.33 E-value=0.014 Score=44.35 Aligned_cols=91 Identities=9% Similarity=-0.134 Sum_probs=56.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG 143 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 143 (487)
...-+...|++++|..+|+-+.--+ +.+..-|..|..++-..+++++|+..|......+. -|+..+.....+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC 114 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHH
Confidence 3444456677777777777666554 45556666666666666777777777666544432 244445556666
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 011362 144 FCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~ 162 (487)
+...|+.+.|...|...+.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 6677777777777766665
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.26 E-value=0.0028 Score=41.69 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=33.6
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 387 GGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
..|.+.+++++|.++++++...++. +...|.....++...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666664322 4455555666666666666666666666653
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.25 E-value=0.00066 Score=45.42 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 59 FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
.+++.+...|...|++++|+..|++..+.....|...+....++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356677777778888888877777766432111111112356788888999999999999999887654
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.094 Score=48.74 Aligned_cols=251 Identities=14% Similarity=0.115 Sum_probs=125.2
Q ss_pred HHHHHHHHHhcCChhhHHHHH---------HHHHHcCCCCChhhHHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCCHH
Q 011362 137 YTSVIRGFCYAKDWNEAKRLF---------IEMMDQGVQPNVVTFNVIMDELCKNGKM--DEASRLLDLMIQHGVRPDAF 205 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~ 205 (487)
+..-+..|...|.+++|.++- +.+... ..+...++..-.+|.+..+. -+...-++++.+.|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 334445566777777766531 111111 11223344444566555443 33444456777777767754
Q ss_pred HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHH-----HHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHH
Q 011362 206 TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYS-----ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTL 280 (487)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 280 (487)
. +...++-.|++.+|.++|.+--..+ .-...|+ .++.-+...|..++-..+.++-.+. .-+..--...
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaA 709 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAA 709 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHH
Confidence 3 3455666777777777775431110 0011111 1223344444444433333322111 0011111233
Q ss_pred HHHHHhcCCHHHHHHHHHH------HHHcC---CCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHH
Q 011362 281 FVGLFEIHQVERAFKLFDE------MQRNG---VAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLI 351 (487)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~------~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 351 (487)
...+...|+.++|..+... +.+-+ ...+..+...+...+.+...+.-|-++|.++-.. ..++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence 4445566666666554311 11111 1223345555555566667777777777776432 2456
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCCCcHHH-----------HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 352 DGLCKSGRLEIALELFRSLPCGVLVPNVVT-----------YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
+.....+++++|..+-++..+. .|++.. |...-.+|.+.|+-.+|..+++++..
T Consensus 781 qlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 6677888888888888777653 344321 12223455666666666666666654
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.18 E-value=0.19 Score=46.49 Aligned_cols=187 Identities=13% Similarity=-0.008 Sum_probs=93.1
Q ss_pred HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 011362 239 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDG 318 (487)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (487)
..+|...+..-...|+.+.+.-+++...-. ...=...|...+.-....|+.+-+..++....+-..+..+.+-..-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345666666666777777777777766531 1112233444444444457777666666555443222222211111222
Q ss_pred HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH---HHHHhccCCCCCCcH--HHHHHHHH-HHHcc
Q 011362 319 LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIAL---ELFRSLPCGVLVPNV--VTYSIMIG-GLCND 392 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~ 392 (487)
.-..|++..|..+++.+...- +--...-..-+....+.|+.+.+. .++.........+.. ..+....+ .+.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 334567777777777776543 222222222333445566666666 444333322111111 11111111 12335
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011362 393 GQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 393 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (487)
++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 6777777777777765 3445566666666555443
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.23 Score=47.15 Aligned_cols=343 Identities=13% Similarity=0.110 Sum_probs=163.6
Q ss_pred HHhcCCCCCHHHHHH-----HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh--hHHHHH
Q 011362 49 LRVFGCEPDVFTYTT-----LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV--DKAKEL 121 (487)
Q Consensus 49 ~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~ 121 (487)
+...|++.+..-|.. ++.-+...+.+..|+++-..+.... ..+...|.....-+.+..+. +.+.+.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-------~~~~~Vl~~Wa~~kI~~~d~~d~~vld~ 495 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-------SQGDRVLLEWARRKIKQSDKMDEEVLDK 495 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-------ccccHHHHHHHHHHHhccCccchHHHHH
Confidence 445555555554433 4455566677777777766654322 11245566666655554321 222222
Q ss_pred H-HHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011362 122 L-LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ----PNVVTFNVIMDELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 122 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 196 (487)
+ +++... .. +...|..+.+.....|+++-|..+++.=...+.. .+..-+...+.-....|+.+-...++-.+.
T Consensus 496 I~~kls~~-~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 496 IDEKLSAK-LT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHHhccc-CC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 2 222221 12 3345666666666777777777766542222111 112223444555566777777666666555
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHH-HHHH----HCCCc
Q 011362 197 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLY-SEML----SKGIK 271 (487)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~----~~~~~ 271 (487)
.+- +...+...+ .+...|..+|.+..+.. +. ..+-..|....+...+-.+. +... ..+..
T Consensus 574 ~~~---~~s~l~~~l------~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~ 638 (829)
T KOG2280|consen 574 NKL---NRSSLFMTL------RNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRI 638 (829)
T ss_pred HHH---HHHHHHHHH------HhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccc
Confidence 430 111111111 22344455555443321 00 11112222222222111111 1100 01111
Q ss_pred cChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHH-cCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 011362 272 PDVVIHNTLFVGLFEIHQ----------VERAFKLFDEMQR-NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC 340 (487)
Q Consensus 272 ~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (487)
|+ .......+.+... ..+-+.+...+.. .+..-...+.+.-+.-+...|+..+|.++-.++.
T Consensus 639 ~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---- 711 (829)
T KOG2280|consen 639 PA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---- 711 (829)
T ss_pred hh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----
Confidence 22 1222222222221 1111122222221 1222233345555556667777777777776665
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDML 420 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (487)
-||-..|..-+.+++..+++++-+++-+... ++.-|.-...+|.+.|+.++|.+++-+.... . -.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ek 776 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EK 776 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HH
Confidence 4666777777777777777777666655444 1334556667777888888888777665432 1 34
Q ss_pred HHHHHhcCChhHHHHHH
Q 011362 421 IRGFIRINEPSKVIELL 437 (487)
Q Consensus 421 ~~~~~~~g~~~~a~~~~ 437 (487)
..+|.+.|++.+|.++-
T Consensus 777 v~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 777 VKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHhccHHHHHHHH
Confidence 55667777777766544
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.11 Score=42.66 Aligned_cols=140 Identities=15% Similarity=0.049 Sum_probs=80.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH-----HH
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRT-----FI 316 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~ 316 (487)
.+.++.++.-.+.+.-...++.++++...+.++.....+.+.-.+.|+.+.|...|+...+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555566666666677777777665555666666666666677777777777776654432333322222 22
Q ss_pred HHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHH
Q 011362 317 DGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSI 384 (487)
Q Consensus 317 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (487)
..+.-.+++.+|...+.++...+ +.++...|.-.-+..-.|+...|.+.++.|.+. .|...+-++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 33445566666666666666554 444555554444445566777777777777664 344444333
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.12 E-value=0.0017 Score=43.45 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=51.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC---CC-HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFG--CE---PD-VFTYTTLVNGLCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 86 (487)
..+|+.+...|...|++++|+..|++..+.. .. |+ ..++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999987541 11 22 44678899999999999999999998764
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=97.11 E-value=0.06 Score=48.42 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=69.8
Q ss_pred chHHHHHHHHH---hCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011362 5 SHGFVVLGRIL---KSCFTPDAVTFTSLIKGLCAE---------SRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS 72 (487)
Q Consensus 5 ~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 72 (487)
++|+.+|.+++ ..+ |.....|..+..++... .+..+|.++.++..+.+ +.|+.+...+..+..-.+
T Consensus 275 ~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45777777777 432 22255555554444322 23445666666666665 556666666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 73 HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+++.|..+|++....+ |....+|......+.-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 7777777777777655 444555555555555667777777777775554
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.11 E-value=0.18 Score=44.70 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK---EGFVDKAKELLLQMKDKNIKPNV 134 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 134 (487)
..+...++-+|....+++..+++.+.+......- +..+...-...+-++.+ .|+.++|++++..+......+++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~---~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD---VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc---hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 3445567778999999999999999998753100 12233444455666777 89999999999996666667889
Q ss_pred hhHHHHHHHHHhc---------CChhhHHHHHHHHHH
Q 011362 135 VTYTSVIRGFCYA---------KDWNEAKRLFIEMMD 162 (487)
Q Consensus 135 ~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~ 162 (487)
.+|..+.+.|-.. ...++|+..|.+.-+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 9999988877421 235666666666544
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.32 Score=46.27 Aligned_cols=341 Identities=12% Similarity=0.103 Sum_probs=198.8
Q ss_pred cccchHHHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh--hhHHHHHHHHHHcCCCC
Q 011362 95 CEPNTVTYTT-----IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW--NEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 95 ~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~ 167 (487)
+|.+..-|.. ++.-+...+.+..|+++-..+...-.. ...+|......+.+..+. +++.+.+++=..... .
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~ 505 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-T 505 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-C
Confidence 5666666654 466677789999999998877544222 256777777777776432 233333333222212 3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR----PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYS 243 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 243 (487)
....|..+.+.....|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+... .+...+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 4566888888888999999999888643322211 12233455567778889999888888777653 1222222
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH-HHc-CCCCcHHhHHHHHHHHHh
Q 011362 244 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM-QRN-GVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~ 321 (487)
.. ..+...|..+|.+..+.. +.. .+-..|....+...+-.+.-+- ... .+.+-..........+.+
T Consensus 583 ~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 583 MT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 22 345567778888776641 111 1122222222222222211111 000 011112223333444443
Q ss_pred CCCH---hH-------HHHHHHHHH-HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 322 NGYI---VE-------AVELFHTLR-ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 322 ~~~~---~~-------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
.... .+ -+.+.+.+. +.+.....-+.+--+.-+...|+..+|.++-.++. -|+...|-.-+.+++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALA 726 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHH
Confidence 3321 11 122222222 12223333445566667788999999999998887 678888888899999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccccccccc
Q 011362 391 NDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLP 470 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 470 (487)
..+++++-+++-+... .+.-|.-.+.+|.+.|+.++|.+.+-+.-.. + -...+|.+.|++.+|++
T Consensus 727 ~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHhccHHHHHH
Confidence 9999988777655443 3556777889999999999999999877431 1 33455666666655444
Q ss_pred c
Q 011362 471 S 471 (487)
Q Consensus 471 ~ 471 (487)
.
T Consensus 792 ~ 792 (829)
T KOG2280|consen 792 L 792 (829)
T ss_pred H
Confidence 3
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.02 E-value=0.22 Score=44.31 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 011362 276 IHNTLFVGLFEIHQVERAFKLFDEMQRNG-VAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL 354 (487)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (487)
+|...+....+....+.|..+|-++.+.+ ..++...+++++..++ .|+..-|..+|+.-...- +.++.-.+-.+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 45556666677888999999999999988 5677788888888665 588889999998766542 33444445667778
Q ss_pred HhcCCHHHHHHHHHhccCCCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011362 355 CKSGRLEIALELFRSLPCGVLVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGF 424 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (487)
...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+=++|... -|...+.....+-|
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 8899999999999966543 2223 467889998888999999999888888773 44444444343334
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.02 E-value=0.22 Score=44.16 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 416 TFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
.+..++.++.-.|++++|.+.+++|....
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 34567778888899999999999988753
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.17 Score=41.06 Aligned_cols=87 Identities=14% Similarity=0.008 Sum_probs=45.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...|..-..+|....++++|...+.+..+.. ..+...|. ....++.|.-+.+++.+. +.-...|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~kl--------sEvvdl~ 94 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKL--------SEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHh--------HHHHHHH
Confidence 4445555666666667777766666655321 12221111 122345555555555542 2334555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQM 125 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~ 125 (487)
+.....|..+|.++.|-..+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHH
Confidence 56666666666666666665554
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.87 E-value=0.065 Score=49.99 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=65.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHH-
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKPNVVTYT- 138 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~- 138 (487)
++....-.|+-+.+++.+....+.++-.+.......-.|+..+..++. ....+.|.++++.+.+. -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 334444568888888888776664421100000011223333333332 23456667777766664 23433333
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC---CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
.-.+.+...|+.++|++.|++..... .+.....+-.++-.+....++++|...|..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 23455566677777777777554211 0111122233344455556666666666666554
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.029 Score=46.47 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCE--PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
.|+.- -.+.+.|++..|...|...++.... -....+.-|+.++...|+++.|...|..+.+..+. .+.-++.+
T Consensus 144 ~Y~~A-~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~----s~KApdal 218 (262)
T COG1729 144 LYNAA-LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK----SPKAPDAL 218 (262)
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC----CCCChHHH
Confidence 35543 3345667777777777777766321 12234556777777777777777777777776543 23445667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..|..+..+.|+.++|...|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777777777777777777777665
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.13 Score=43.20 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=105.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
-.......|++.+|...|....... +-+......++.+|...|+.+.|..++..+..... .........-+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~------~~~~~~l~a~i~l 212 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ------DKAAHGLQAQIEL 212 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch------hhHHHHHHHHHHH
Confidence 3456678999999999999988875 44456777888999999999999999998876541 1111222234556
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCChhhHHHHHHHHHhCCChH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ--GVQPNVVTFNVIMDELCKNGKMD 186 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 186 (487)
+.+.....+...+-..+-.. +-|...-..+...+...|+.+.|.+.+-.+++. |.. |...-..++..+...|.-+
T Consensus 213 l~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 66666666666666555543 337777778888999999999999888777654 333 5566677777777777443
Q ss_pred HH
Q 011362 187 EA 188 (487)
Q Consensus 187 ~a 188 (487)
.+
T Consensus 290 p~ 291 (304)
T COG3118 290 PL 291 (304)
T ss_pred HH
Confidence 33
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.77 E-value=0.034 Score=49.83 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=47.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV----FTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
.+...++.+..+|...|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677777888888888888888888877763 332 24777777888888888888888877763
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.24 Score=40.25 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC 215 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (487)
.|.....+|...+++++|...+.+..+. ..-+...|. . ...++.|..+++++.+. .--+..++.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555556677777888888777766532 111222222 1 22345555555555443 112234555556677
Q ss_pred cCCCHhHHHHHHHHH
Q 011362 216 LTGRVNHAKELFVSM 230 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~ 230 (487)
..|.++.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 777777666665554
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.3 Score=41.12 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=82.4
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 66 NGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
......|++.+|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34567778888888888777765 55567777778888888888888888877654421111111112233444
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCC
Q 011362 146 YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHG-VRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 218 (487)
+.....+...+-.+.-.. +-|...-..+...+...|+.+.|++.+-.+.+.+ -.-|...-..++..+...|
T Consensus 215 qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 215 QAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444444333331 1145555566667777777777776665555432 1224455555555555555
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.03 Score=48.99 Aligned_cols=117 Identities=14% Similarity=0.003 Sum_probs=65.4
Q ss_pred CccchHHHHHHHHHhCCC-----C---------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCF-----T---------PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG 67 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~-----~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 67 (487)
|++..|...|++++..-. + .-..++..|.-+|.+.+++..|++.-++.+..+ ++|+..+..-..+
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A 300 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQA 300 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHH
Confidence 566777777776543310 0 112345555666666677777777666666665 5566666666666
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV-DKAKELLLQMK 126 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 126 (487)
+...|+++.|+..|+++.+.. |.|..+-..++.+-.+.... ++..++|..|.
T Consensus 301 ~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 301 LLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777777777777766654 34444444444443333322 23345555554
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.65 E-value=0.093 Score=47.17 Aligned_cols=65 Identities=17% Similarity=-0.014 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch---HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT---VTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+...++.+..+|...|++++|+..|++..+.+ |.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556666777777777777777777766654 2222 24666777777777777777777766654
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.60 E-value=0.072 Score=39.15 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhc
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-NIKPNVVTYTSVIRGFCYA 147 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 147 (487)
..|+..+..+++.+|+..|++..|.++.+.+.+. +++.+..+|..|+.-+...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 5678888888888888888888888888877553 5666777888877755433
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.057 Score=47.31 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---------CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccc
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVF-----GCEP---------DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVV 94 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 94 (487)
-...|.+.|++..|...|+++... +.++ -..++..+..++.+.+++..|++..++.+..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------ 287 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD------ 287 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC------
Confidence 356788999999999999987653 1111 01123344444555555555555555555544
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
++|......-..++...|+++.|+..|+++++.
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555543
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.53 E-value=0.69 Score=43.05 Aligned_cols=413 Identities=11% Similarity=0.070 Sum_probs=213.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
...|..++.--....+.+.+..++..++.. -|-.. -|......=.+.|..+.+.++|++.... +|.+...
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------ip~Svdl 115 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------IPLSVDL 115 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hhhHHHH
Confidence 334555554433444445566666666643 23332 3445555555677777888888877765 3566666
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011362 102 YTTIIDGLCK-EGFVDKAKELLLQMKDK-NIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 178 (487)
Q Consensus 102 ~~~l~~~~~~-~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (487)
|...+..+.. .|+.+.....|+..... |.. .+...|...+..-..++++.....++++.++. ....++.....
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~ 191 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDR 191 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHH
Confidence 6665554443 46666777777766553 211 24456677777667777777888888777764 12223322222
Q ss_pred HH---hCC------ChHHHHHHHHHHHHC---C-CCCCHHHHHHHHHHH-HcCCCHhHHHHHHHHHHHcCCCCCHhhHHH
Q 011362 179 LC---KNG------KMDEASRLLDLMIQH---G-VRPDAFTYNTLLDGF-CLTGRVNHAKELFVSMESMGCKHTVFSYSI 244 (487)
Q Consensus 179 ~~---~~~------~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 244 (487)
|. ... ..+++.++-...... + ..+.......-+.-- ...+..+++...+.+.. ..
T Consensus 192 f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~ 260 (577)
T KOG1258|consen 192 FKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SI 260 (577)
T ss_pred HHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HH
Confidence 21 111 112222221111110 0 000000000000000 00011111111111110 11
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHCC---C----ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 011362 245 LINGYCKNKEIEGALSLYSEMLSKG---I----KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (487)
.-.++............++..+... + .++..+|...+..-...|+.+.+.-.+++..-.... =...|-..+.
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~ 339 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYAR 339 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHH
Confidence 1112222333333334444433321 1 224557788888888999999999999888643111 1234555555
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHH-HHHHHHHHHHccCCHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVV-TYSIMIGGLCNDGQMD 396 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 396 (487)
.....|+.+-|..++....+...+..+.+.-.-....-..|++..|..+++.+.+.- |+.. .-..-+....+.|..+
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchh
Confidence 556669988888888777655444333333222333456789999999999998762 5543 2223344456678877
Q ss_pred HHHH---HHHHHHhCCCCCC--HHHHHHHHH-HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 397 KARD---LFLDMEENAVVPN--VITFDMLIR-GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 397 ~A~~---~~~~~~~~~~~~~--~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
.+.. ++.........+. ...+....+ .+.-.++.+.|..++.++.+.. +++...|..++....-.+
T Consensus 418 ~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 418 DANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 7773 3333222111111 112222222 2345678899999999998863 666777777776655444
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.88 Score=44.15 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=98.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
.+.......+.+.|++++|...|-+.+.. +.|. .++.-|....+..+-..+++.+.+.+ -.+...-.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~g-------la~~dhtt 435 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKG-------LANSDHTT 435 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcc-------cccchhHH
Confidence 34455566677899999999988776543 1222 25566667777778888888888887 45677778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCC
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 183 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (487)
.|+.+|.+.++.++-.+..+... .|.- ..-....+..+.+.+-.++|.-+-.+... ....... .+-..+
T Consensus 436 lLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ 504 (933)
T KOG2114|consen 436 LLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLH 504 (933)
T ss_pred HHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhc
Confidence 89999999999988877776554 2211 11244566777777777777766555432 2222222 334567
Q ss_pred ChHHHHHHHHHH
Q 011362 184 KMDEASRLLDLM 195 (487)
Q Consensus 184 ~~~~a~~~~~~~ 195 (487)
++++|++++..+
T Consensus 505 ny~eAl~yi~sl 516 (933)
T KOG2114|consen 505 NYEEALRYISSL 516 (933)
T ss_pred CHHHHHHHHhcC
Confidence 777777776544
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.065 Score=44.44 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=73.4
Q ss_pred CCccchHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTP--DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGC--EPDVFTYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 76 (487)
.|+|..|.+.|...++..+.- ...++..|..++...|++++|..+|..+.+... +--+..+..|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 488999999999999986331 145667799999999999999999999987632 1234678888999999999999
Q ss_pred HHHHHHHHHhCC
Q 011362 77 ALNLFEEMANGN 88 (487)
Q Consensus 77 a~~~~~~~~~~~ 88 (487)
|...|+++.+..
T Consensus 234 A~atl~qv~k~Y 245 (262)
T COG1729 234 ACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHC
Confidence 999999999986
No 240
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.49 E-value=0.53 Score=41.30 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS 357 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (487)
+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... ..++..|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444455555555555433331 35555666666666666666655544321 22345566666666666
Q ss_pred CCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 358 GRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
|+..+|..+..++. +..-+..|.++|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 66666666655522 12334455666666666554
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.46 E-value=0.08 Score=38.92 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 011362 374 VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN-AVVPNVITFDMLIRGF 424 (487)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 424 (487)
...|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35678888888888888888888888888877543 6666677777776543
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.13 Score=43.81 Aligned_cols=157 Identities=14% Similarity=0.036 Sum_probs=107.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCccccccchHHHHHHHHHHHh
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG-NGEFGVVCEPNTVTYTTIIDGLCK 111 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 111 (487)
+.-+|++.+|-..++++++.. |.|.-++...=.+|...|+.+.-...++++... +.+ .|-.......+.-++..
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d----lp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD----LPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCC----CcHHHHHHHHHHhhHHH
Confidence 456788888888888888763 666667777777888888888888888888765 211 22223334445556677
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCChhhHHHHHHHHHhCCChHHH
Q 011362 112 EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ---GVQPNVVTFNVIMDELCKNGKMDEA 188 (487)
Q Consensus 112 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 188 (487)
.|-+++|++.-++..+.+ +.|....+.+...+-..+++.++.+...+-... +--.-...|-...-.+...+.++.|
T Consensus 188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 888999999888888775 346667777788888888888888876654322 1111122333445566677889999
Q ss_pred HHHHHHH
Q 011362 189 SRLLDLM 195 (487)
Q Consensus 189 ~~~~~~~ 195 (487)
+.+|+.=
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 9988653
No 243
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.44 E-value=0.57 Score=41.13 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
+.+..+.-+...|+...|.++-.++. -|+...|..-+.+++..++|++-..+... . -++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence 45555666777888888888876664 57888888889999999999887776543 1 23466788888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 391 NDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 999998888887762 2 1 3445567788888777665433
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.44 E-value=0.011 Score=33.96 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLV 65 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 65 (487)
.++..+...|...|++++|+++|+++++.. +.|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 457788999999999999999999999875 55666665554
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.42 E-value=0.43 Score=39.43 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=28.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 175 IMDELCKNGKMDEASRLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
+.+.|.+.|.+..|..-++.|++. .+-+. ..+-.+..+|...|-.++|.+.-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344556666666666666666654 22122 23334445566666666555544333
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.39 E-value=0.26 Score=36.71 Aligned_cols=67 Identities=9% Similarity=-0.039 Sum_probs=53.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC--EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
...+..-.....+.|++++|++.|+.+..+-. +-...+...++.+|.+.+++++|...+++..+.++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 33444456777899999999999999988732 22345677889999999999999999999999874
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.39 E-value=0.057 Score=38.89 Aligned_cols=88 Identities=14% Similarity=0.045 Sum_probs=68.9
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHccCChHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF---TYTTLVNGLCRTSHTIVA 77 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a 77 (487)
.|+++.|++.|.+.+... |...++||.-.+++.-+|+.++|+.=+++.++........ .|..-...|...|+.+.|
T Consensus 56 ~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 478899999999998885 4578889999999999999999999999888764233322 344455667788999999
Q ss_pred HHHHHHHHhCCC
Q 011362 78 LNLFEEMANGNG 89 (487)
Q Consensus 78 ~~~~~~~~~~~~ 89 (487)
..=|+...+.++
T Consensus 135 R~DFe~AA~LGS 146 (175)
T KOG4555|consen 135 RADFEAAAQLGS 146 (175)
T ss_pred HHhHHHHHHhCC
Confidence 998988887763
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.39 E-value=0.11 Score=47.75 Aligned_cols=161 Identities=13% Similarity=0.131 Sum_probs=97.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
.+...-+|+++++.++.+.-.-.. ..+......++.-+.+.|..+.|+++-.. +.+ -....
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------------~~~---rFeLA 328 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------------PDH---RFELA 328 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------------HHH---HHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------------hHH---HhHHH
Confidence 344566788888877775211110 12244567778888888888888876543 111 12334
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|++.|.+... +..|+-.|...|+.+...
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 5678888888774322 3677888899988899999999888887542 667777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
++.+.....|. ++....++.-.|+.++..+++.+.
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88877777653 233344455567777777766543
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.38 E-value=0.37 Score=45.08 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCccccc
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF------TYTTLVNGLCR----TSHTIVALNLFEEMANGNGEFGVVCE 96 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 96 (487)
..++....-.||-+.+++.+.+..+.+.-..+. .|...+..++. ....+.|.++++.+.+.. |
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------P 264 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------P 264 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------C
Confidence 445666677899999999999877643111111 23333333333 456788999999999875 3
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN--I-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFN 173 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 173 (487)
......-.-.+.+...|++++|++.|+...... . +.....+--+...+...++|++|...|..+.+.+-. +...|.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~ 343 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYA 343 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHH
Confidence 333444445677788999999999999765421 1 112233445677788899999999999999886432 344444
Q ss_pred HHHH-HHHhCCCh-------HHHHHHHHHHH
Q 011362 174 VIMD-ELCKNGKM-------DEASRLLDLMI 196 (487)
Q Consensus 174 ~l~~-~~~~~~~~-------~~a~~~~~~~~ 196 (487)
-+.. ++...++. ++|..+|.+..
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3333 45566766 66666666543
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.35 E-value=0.6 Score=40.36 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=64.1
Q ss_pred CccchHHHHHHHHHhCCC--CCCH-----HhHHHHHHHHHhcC-CHHHHHHHHHHHHhc----C----CCCCH-----HH
Q 011362 2 GRVSHGFVVLGRILKSCF--TPDA-----VTFTSLIKGLCAES-RIMEAAALFTKLRVF----G----CEPDV-----FT 60 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~--~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~----~~~~~-----~~ 60 (487)
|+++.|..++.++..... .|+. ..+..++......+ +++.|..++++..+. + ..++. .+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 778888888888766431 2221 12222334444556 888888877776543 1 12222 23
Q ss_pred HHHHHHHHHccCChH---HHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 61 YTTLVNGLCRTSHTI---VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+..++.+|...+..+ +|.++++.+.+.. +..+..+..-+.++.+.++.+.+.+++.+|...
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445555555555443 3444444443332 333455555555555566666666666666654
No 251
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.32 E-value=0.62 Score=40.29 Aligned_cols=168 Identities=11% Similarity=0.103 Sum_probs=96.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--CCCHH-----HHHHHHHHHHccC-ChHHHHHHHHHHHhC----CCCCcccccc---
Q 011362 33 LCAESRIMEAAALFTKLRVFGC--EPDVF-----TYTTLVNGLCRTS-HTIVALNLFEEMANG----NGEFGVVCEP--- 97 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~~~~~~~~~~--- 97 (487)
..+.|+++.|..++.++..... .|+.. .+..++......+ +++.|..++++..+. +... . ..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~-~-~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD-K-LSPDGS 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc-c-cCCcHH
Confidence 3578999999999999876431 23221 2233344445666 999888888776543 1100 0 112
Q ss_pred --chHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH
Q 011362 98 --NTVTYTTIIDGLCKEGFVD---KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF 172 (487)
Q Consensus 98 --~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 172 (487)
...+...++.+|...+..+ +|..+++.+... .+-.+.++..-+..+.+.++.+.+.+.+.+|+..- ......+
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~ 158 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchH
Confidence 2345667777777776644 455566666443 22235556566677777888888888888888752 2123344
Q ss_pred HHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCH
Q 011362 173 NVIMDELC--KNGKMDEASRLLDLMIQHGVRPDA 204 (487)
Q Consensus 173 ~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~ 204 (487)
...+..+. .......+...+..+....+.|..
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44444431 122334555666555544444443
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.31 E-value=0.54 Score=39.45 Aligned_cols=225 Identities=16% Similarity=0.047 Sum_probs=152.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCccccccchHHHHHHHHHHHhcC
Q 011362 36 ESRIMEAAALFTKLRVFGCEP-DVFTYTTLVNGLCRTSHTIVALNLFEEMANG-NGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
.+....+...+.......... ...........+...+.+..+...+...... . .+.....+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHh
Confidence 467777777777776653221 2456667777788888888888888877652 1 2456677777777788888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHhcCChhhHHHHHHHHHHcCC--CCChhhHHHHHHHHHhCCChHHHHH
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIR-GFCYAKDWNEAKRLFIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (487)
++..+.+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 110 KYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 8888888888887754332 222233333 67788899999998888855321 1223334444445677888899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 191 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.+..............+..+...+...++++.+...+....... +.....+..+...+...+..+.+...+......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888776322135667777888888888899998888887763 222344455555555677788998888888775
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=96.27 E-value=0.11 Score=46.70 Aligned_cols=115 Identities=9% Similarity=-0.015 Sum_probs=86.8
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
...+|+..-+++++.+ +.|+.+...+..++...++++.|..+|++....+ +....+|......+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467889999999998 5689988889998888999999999999999875 4445677777777788999999999999
Q ss_pred HHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 83 EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQM 125 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 125 (487)
+..+..| ...........+..|+..+ ++.|+.+|-+-
T Consensus 397 ~alrLsP-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQLEP-----RRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHhccCc-----hhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 9887652 1222333444455666554 67777776543
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.18 E-value=0.59 Score=38.67 Aligned_cols=72 Identities=6% Similarity=0.045 Sum_probs=43.5
Q ss_pred HHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKN--IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
-.+.|++++|.+.|+.+.... -+....+...++.++.+.++++.|+..+++.....+......|...+.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 346777788888777776541 122344555666677777777777777777766543333333444444443
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.17 E-value=0.16 Score=46.78 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=89.3
Q ss_pred HHHHccCChHHHHHHHH--HHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011362 66 NGLCRTSHTIVALNLFE--EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG 143 (487)
Q Consensus 66 ~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 143 (487)
....-.++++++.++.+ ++.. .......+.++..+.+.|..+.|+++.. |+. .-...
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---------~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeL 327 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---------NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFEL 327 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---------G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---------cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHH
Confidence 34445677777666664 2221 1124556777777777888887777642 221 22334
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHH
Q 011362 144 FCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (487)
..+.|+++.|.++.++. .+...|..|.......|+++-|.+.|.+.. -+..|+-.|...|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHH
Confidence 45678888777765432 256678888888888888888888877642 244556667777777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEM 265 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (487)
.++.+.....|- ++....++...|+.++..+++.+.
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777766666542 334444455567777777666543
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.14 E-value=0.021 Score=32.89 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 59 FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
.++..+...|...|++++|+++|+++.+.. |.+...+..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhhh
Confidence 457788999999999999999999999986 667777766653
No 257
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.43 Score=36.58 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=51.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH-HHH--HHHHHH
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV-TYT--TIIDGL 109 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~--~l~~~~ 109 (487)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|.++....+ .|... -.. .-...+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~------~P~~~rd~ARlraa~lL 142 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS------IPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC------CcchhhHHHHHHHHHHH
Confidence 34455555555555555544322111 122223334455555555555555554331 11110 011 111123
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...|.++......+-+-..+-+.....-..|..+-.+.|++.+|.++|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555554444443333222333333444444455555555555555443
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.12 E-value=0.15 Score=36.83 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=44.2
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHH
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV---TYTSVIRG 143 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~ 143 (487)
+++..|+.+.|++.|.+....- |.+...||.-..++--.|+.++|++-+++..+..-..+.. .|..-...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3445555555555555555432 4445555555555555555555555555544331111221 23333334
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 011362 144 FCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~ 164 (487)
|...|+.+.|..-|+..-+.|
T Consensus 125 yRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhC
Confidence 445555555555555554444
No 259
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.08 E-value=0.56 Score=37.52 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 204 AFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
..||.-+...+...|+.++|..+|+-....
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 356666667777777777777777666554
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.06 E-value=0.37 Score=41.69 Aligned_cols=229 Identities=11% Similarity=0.028 Sum_probs=136.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHH----HHHHhCCCCCccccccchHHHHHHH
Q 011362 33 LCAESRIMEAAALFTKLRVFG--CEPDVFTYTTLVNGLCRTSHTIVALNLF----EEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
+.+..+..+|+..|.+-+..- ......++..+..+..+.|.+++++..- +...+... ...--..|..+.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d-----s~~~~ea~lnla 90 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED-----SDFLLEAYLNLA 90 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 456777888888777765431 0111224556667777888887765532 22222110 011234566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCChhhHHHHHH
Q 011362 107 DGLCKEGFVDKAKELLLQMKDK-NIKP---NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG-----VQPNVVTFNVIMD 177 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 177 (487)
+++-+.-++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.. ......++..+..
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 6666666666666665443322 2222 12234456777788888999999999886532 1123456778888
Q ss_pred HHHhCCChHHHHHHHHHHHHC----CCCCCH------HHHHHHHHHHHcCCCHhHHHHHHHHHHH----cCCCC-CHhhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQH----GVRPDA------FTYNTLLDGFCLTGRVNHAKELFVSMES----MGCKH-TVFSY 242 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~ 242 (487)
.|....++++|.-+..+..+. ++. |. .....|..++...|....|.+.-++..+ .|-.+ .....
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 888999999888766554432 222 21 1223345566777888888877776543 33111 22334
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
..+.+.|...|+.+.|+.-|++...
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHH
Confidence 5677888899999999888887654
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.04 E-value=0.13 Score=38.33 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=50.9
Q ss_pred CCccchHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTP--DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC 69 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 69 (487)
.|++++|.+.|+.+..+-+.. ...+.-.|+.+|.+.+++++|+..+++.++.++......|...+.+++
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 489999999999999885332 244567789999999999999999999999864322233444444443
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.42 Score=40.93 Aligned_cols=151 Identities=17% Similarity=0.095 Sum_probs=92.7
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh----hHHHHHHHHHhcCCHH
Q 011362 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV----IHNTLFVGLFEIHQVE 291 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~ 291 (487)
..|+..+|-..++++.+. .|.|...+...-.+|.-.|+.+.-...++++... ..++.. .-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666776677777654 3666666777777777788877777777777653 122332 2233344455677788
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC---CCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 292 RAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK---CEFDIRAYNSLIDGLCKSGRLEIALELFR 368 (487)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (487)
+|++.-++..+-+ +.|..........+...|+..++.++..+-...- .-.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888777777654 4556666667777777788888877776644211 00111223333444556677888888886
Q ss_pred h
Q 011362 369 S 369 (487)
Q Consensus 369 ~ 369 (487)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 263
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.83 E-value=0.12 Score=42.87 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 431 SKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
+-++.++++|...|+.||..+-..++++|++.|
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 456777777777777777777777777776654
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.82 E-value=0.57 Score=35.49 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 314 TFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 314 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.++..+...+.+.....+++.+...+ +.++...+.++..|++. +..+..+.++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444445555566666666555544 34555555666665544 23334444432 012222334555555555
Q ss_pred CHHHHHHHHHHH
Q 011362 394 QMDKARDLFLDM 405 (487)
Q Consensus 394 ~~~~A~~~~~~~ 405 (487)
-++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666655554
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.79 E-value=0.16 Score=42.86 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHHHHH
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-----EINVMPDASIVSIV 455 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 455 (487)
++..++..+...|+++.+...++++..... -+...|..++.+|.+.|+...|++.|+++. +.|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 455666667777777777777777776532 366677777777777777777777777665 35777777776666
Q ss_pred HHHHH
Q 011362 456 VDLLA 460 (487)
Q Consensus 456 ~~~~~ 460 (487)
.+.+.
T Consensus 234 ~~~~~ 238 (280)
T COG3629 234 EEILR 238 (280)
T ss_pred HHHhc
Confidence 66533
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.73 Score=35.41 Aligned_cols=121 Identities=13% Similarity=0.077 Sum_probs=88.5
Q ss_pred CccchHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH--HHHHHHHHccCChHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAV-TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TY--TTLVNGLCRTSHTIVA 77 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~~g~~~~a 77 (487)
|+.++|+.-|..+.+.|...-+. ..-.......+.|+...|+..|.++-.....|-.. -. ..-.-.+...|.++..
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 67889999999999988553222 23334556778999999999999987764333322 11 1122345688999999
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
....+-+...+ -+-....-..|.-+-.+.|++..|.++|..+...
T Consensus 152 ~srvepLa~d~------n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 152 SSRVEPLAGDG------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhhhccCCC------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 98888877665 3445566778888888999999999999998764
No 267
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.43 E-value=2 Score=39.19 Aligned_cols=412 Identities=12% Similarity=0.064 Sum_probs=209.1
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHH
Q 011362 6 HGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG-LCRTSHTIVALNLFEEM 84 (487)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~ 84 (487)
+...+|+++..+ ++.|+..|...+..+-+.+.+.+...+|..|...+ +.++..|.....- |-...+.+.|..+|...
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 456778888877 56799999999999988898999999999999875 4455555443333 33344499999999999
Q ss_pred HhCCCCCccccccchHHHHHHHHHHHh-----------cC-ChhHH-HHHHHH-HHhCCCCCCHhhHHHH---H--HHHH
Q 011362 85 ANGNGEFGVVCEPNTVTYTTIIDGLCK-----------EG-FVDKA-KELLLQ-MKDKNIKPNVVTYTSV---I--RGFC 145 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g-~~~~a-~~~~~~-~~~~~~~~~~~~~~~l---~--~~~~ 145 (487)
.+.+ |.++..|....+.-.. .| +...- .++-.. .......++......- + ...-
T Consensus 167 LR~n-------pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~ 239 (568)
T KOG2396|consen 167 LRFN-------PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE 239 (568)
T ss_pred hhcC-------CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH
Confidence 9877 4455555443332110 00 00000 111000 0000011111110000 0 0000
Q ss_pred hcCChhhHH-HHHHHHHHcCCCCChhhHHHHHHH----HHh---------------CCChHHHHHHHHHHHHCCCCCCHH
Q 011362 146 YAKDWNEAK-RLFIEMMDQGVQPNVVTFNVIMDE----LCK---------------NGKMDEASRLLDLMIQHGVRPDAF 205 (487)
Q Consensus 146 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~ 205 (487)
......+.. .+.+.+.. +.+-++.++..+..- +.. ..+.+....+|+...+. .|+..
T Consensus 240 ~~d~~kel~k~i~d~~~~-~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~s 316 (568)
T KOG2396|consen 240 KFDFLKELQKNIIDDLQS-KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTES 316 (568)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHH
Confidence 001111111 12222222 223344444433321 111 11123444566666553 44666
Q ss_pred HHHHHHHHHHcCC------CHhHHHHHHHHHHHcC-C-CCCHhhHHHHHHHHHccCCHhH-HHHHHHHHHHCCCccChhh
Q 011362 206 TYNTLLDGFCLTG------RVNHAKELFVSMESMG-C-KHTVFSYSILINGYCKNKEIEG-ALSLYSEMLSKGIKPDVVI 276 (487)
Q Consensus 206 ~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~ 276 (487)
.|+..|..|...- .......+++.....+ . +.....|..+.-+++..+...+ |..+..+. +..+...
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~ 392 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKM 392 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHH
Confidence 6666666554332 3334444555444332 1 2234456666666665554433 33333233 2335555
Q ss_pred HHHHHHHHHhc-CCHHHH-HHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC-HhHH--HHHHHHHHHcCCCCChH-hHHHH
Q 011362 277 HNTLFVGLFEI-HQVERA-FKLFDEMQRNGVAADTWTYRTFIDGLCKNGY-IVEA--VELFHTLRILKCEFDIR-AYNSL 350 (487)
Q Consensus 277 ~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~~~~~-~~~~l 350 (487)
|..-++...+. .+++-. ...+......-..+....+.... .++ +... ..++..+...+ .++.. .-+.+
T Consensus 393 ~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~ 466 (568)
T KOG2396|consen 393 WQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKY 466 (568)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHH
Confidence 55444444322 122211 12222232221111111222211 222 2221 22334444444 34433 34667
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 011362 351 IDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN--DGQMDKARDLFLDMEEN-AVVPNVITFDMLIRGFIRI 427 (487)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 427 (487)
+..+.+.|-+.+|...+..+... .+|+...|..++..-.. .-+...+..+++.|... | -++..|...+..-...
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccC
Confidence 78888889999999999988876 36677777777654221 22377888888888754 5 5777787777766788
Q ss_pred CChhHHHHHHHHHHh
Q 011362 428 NEPSKVIELLHKMKE 442 (487)
Q Consensus 428 g~~~~a~~~~~~~~~ 442 (487)
|..+.+-.++.++..
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 888888777777653
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.38 E-value=0.61 Score=40.46 Aligned_cols=231 Identities=10% Similarity=0.032 Sum_probs=139.9
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHH----HHHHHhCC-CCCCHhhHHHHHH
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL----LLQMKDKN-IKPNVVTYTSVIR 142 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~-~~~~~~~~~~l~~ 142 (487)
+....+.++|+..+.+....-.+ ......++..+..+.++.|.+++++.. ++...+.. ...--..|..+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888777766553210 011234566677788888887766543 22222210 0112345667777
Q ss_pred HHHhcCChhhHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHH
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQ-GVQP---NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV-----RPDAFTYNTLLDG 213 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~ 213 (487)
++-+.-++.+++.+-+.-... |..| .-.....+..++...+.++++++.|+...+--. -....++..|...
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 777777788887776655443 2222 112334466777888889999999988765311 1234578889999
Q ss_pred HHcCCCHhHHHHHHHHHHH----cCCCCCHh-----hHHHHHHHHHccCCHhHHHHHHHHHHH----CCCcc-ChhhHHH
Q 011362 214 FCLTGRVNHAKELFVSMES----MGCKHTVF-----SYSILINGYCKNKEIEGALSLYSEMLS----KGIKP-DVVIHNT 279 (487)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~ 279 (487)
|.+..|+++|.-+..+..+ .++..-.. ....|.-++...|..-.|.+.-++..+ .|-.+ -......
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 9999999999877766543 23221111 223344556677887777777766544 33222 2234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011362 280 LFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
+...|-..|+.+.|+.-|+....
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHH
Confidence 67778889999998888876543
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.17 E-value=1.6 Score=36.44 Aligned_cols=223 Identities=18% Similarity=0.091 Sum_probs=154.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCcccccc--chHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhc
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-NIKPNVVTYTSVIRGFCYA 147 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 147 (487)
.+....+...+....... +. ....+......+...+.+..+...+...... ........+......+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELL-------PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcC-------ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 456666667777666654 22 3577777888888888888888888887652 2344566777777788888
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHH-HHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHhHHH
Q 011362 148 KDWNEAKRLFIEMMDQGVQPNVVTFNVIMD-ELCKNGKMDEASRLLDLMIQHGV--RPDAFTYNTLLDGFCLTGRVNHAK 224 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 224 (487)
+++..+...+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 88999999998887754333 222333333 68889999999999988865321 123344444455567788999999
Q ss_pred HHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011362 225 ELFVSMESMGCKH-TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN 303 (487)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (487)
..+....... +. ....+..+...+...++++.+...+......... ....+......+...+..+.+...+......
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 188 ELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998887764 33 4567778888888888999999999888875332 2334444444555667788888888888775
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.15 E-value=0.86 Score=33.23 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=66.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh---HHHHHHHHHhCCChH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVT---FNVIMDELCKNGKMD 186 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 186 (487)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+=+ -.|... ...++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc--
Confidence 34577777777777766542 444455444444444444444444444322 122222 1223333333332
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 187 EASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 187 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
+.......+......|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.-
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 22333444555666676676666766665432 5566666677777777777777777777766
Q ss_pred HCCCc
Q 011362 267 SKGIK 271 (487)
Q Consensus 267 ~~~~~ 271 (487)
+.|.+
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 66543
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.14 E-value=0.036 Score=29.65 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=23.2
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 011362 11 LGRILKSCFTPDAVTFTSLIKGLCAESRIMEAA 43 (487)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 43 (487)
|+++++.. |.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666665 447777888888888888887775
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.11 E-value=1.1 Score=34.04 Aligned_cols=84 Identities=21% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.++..+...+.......+++.+...+ +.+...++.++..|++.+ ..+..+.+.. . .+......+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-------~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~ 77 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-------SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGK 77 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-------ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHH
Confidence 45555555666667777777666654 345566666776666543 2233333321 1 12223334555
Q ss_pred HHHhcCChhhHHHHHHHH
Q 011362 143 GFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~ 160 (487)
.|.+.+-++++.-++.++
T Consensus 78 ~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 78 LCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHcCcHHHHHHHHHhh
Confidence 566666666666665543
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.09 E-value=0.35 Score=40.96 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhHH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-----QGVQPNVVTFN 173 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 173 (487)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 5677778888888888888888888887774 45777888888888888888888888877755 47777777766
Q ss_pred HHHHH
Q 011362 174 VIMDE 178 (487)
Q Consensus 174 ~l~~~ 178 (487)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.03 E-value=0.062 Score=29.20 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLR 50 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 50 (487)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
No 275
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.92 E-value=3.9 Score=39.52 Aligned_cols=179 Identities=13% Similarity=0.049 Sum_probs=106.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHH-----hcCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHcc
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLC-----AESRIMEAAALFTKLRV-------FGCEPDVFTYTTLVNGLCRT 71 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 71 (487)
...|.+.++.....| ++.....+..+|. ..+|++.|+.+|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888888776 4444444444443 44688889988888866 33 233455566666653
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 72 S-----HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK-EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 72 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
. +.+.|..++.+....+ .|+.......+..... ..+...|.++|...-+.|. ...+..+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~ 371 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYE 371 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Confidence 3 5677888888888766 3444333333322222 2456788888888888774 333333444332
Q ss_pred ----hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 011362 146 ----YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV 200 (487)
Q Consensus 146 ----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 200 (487)
...+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2246778888888888776 2222222223333333 667776666666665544
No 276
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.78 E-value=4.6 Score=39.70 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=107.0
Q ss_pred hHHHHHHHHH-hCCCCCC--HHhHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHccCChHH
Q 011362 6 HGFVVLGRIL-KSCFTPD--AVTFTSLIKGLC-AESRIMEAAALFTKLRVFGCEPDVF-----TYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 6 ~A~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 76 (487)
-|++.++.+. +...+|. +.++..++..+. ...+++.|...+++.....-.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3677777777 3333333 345566677766 7789999999999876543233222 2234566666666665
Q ss_pred HHHHHHHHHhCCCCCccccccchHHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHHHH--hcCCh
Q 011362 77 ALNLFEEMANGNGEFGVVCEPNTVTYTTI-IDGLCKEGFVDKAKELLLQMKDKN---IKPNVVTYTSVIRGFC--YAKDW 150 (487)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~ 150 (487)
|...+++..+.-..++ ..+-...|..+ +..+...++...|.+.++.+...- ..|...++..++.+.. +.+..
T Consensus 118 a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 8888888766442110 11223334444 333333478999999888876532 2334444545554443 45556
Q ss_pred hhHHHHHHHHHHcCC---------CCChhhHHHHHHH--HHhCCChHHHHHHHHHHH
Q 011362 151 NEAKRLFIEMMDQGV---------QPNVVTFNVIMDE--LCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 196 (487)
+++.+.+..+..... .|...+|..++.. +...|++..+...++.+.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 677777776633211 2234455555553 456777666666655543
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.73 E-value=0.31 Score=40.61 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=66.1
Q ss_pred ccchHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 011362 96 EPNTVTYTTIIDGLCKE-----GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV 170 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 170 (487)
..+..+|...+..+... +.++-....+..|.+.|+.-|..+|+.|+..+-+.. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 34566676666666543 456666677777888888888888888877654321 1111 1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 171 TFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
.+....-.|-+ +-+-++.++++|..+|+-||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111112211 234577888888888888888888888888877765
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.67 E-value=3.5 Score=37.88 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
..+..++-+.|+.++|++.++++.+.... -.......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34566666777777777777777654322 1233556677777777777777777776543
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.46 E-value=3 Score=36.24 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cC----ChhhHHHHHHHHHHcCC---CCChhhHHHHHHHHHhCCC-
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY--AK----DWNEAKRLFIEMMDQGV---QPNVVTFNVIMDELCKNGK- 184 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 184 (487)
+++...+++.|.+.|..-+..+|.+....... .. ...+|..+|+.|++..+ .++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566778888888887666555543332222 22 24577888888877632 2233344444332 2333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcCCC--HhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 011362 185 ---MDEASRLLDLMIQHGVRPDAF--TYNTLLDGFCLTGR--VNHAKELFVSMESMGCKHTVFSYSILINGY 249 (487)
Q Consensus 185 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (487)
.+.+..+|+.+.+.|...+.. ....++..+....+ ..++.++++.+.+.+++.....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 355667777777766654322 22222222222222 346667777777777777666665554443
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.31 E-value=1.5 Score=32.08 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
....+..+.....+|+-+.-.+++..+.+. -.+++..+..+..+|.+.|+..++.++++++-+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556677788899999999999888764 3678888889999999999999999999999988853
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.20 E-value=0.058 Score=28.84 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=24.4
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAK 119 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 119 (487)
|++..+.+ |.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555554 677888888988888889888875
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.19 E-value=1.7 Score=34.40 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC---CC----hHhH
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT--WTYRTFIDGLCKNGYIVEAVELFHTLRILKCE---FD----IRAY 347 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~----~~~~ 347 (487)
+..+...|.+.|+.+.|.+.+.++.+....+.. ..+..+++.....+++..+...+.++...-.. .+ ...+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334444455555555555555554443322221 22334444444455555555444444321111 11 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
..+ .+...+++..|-+.|-...
T Consensus 119 ~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHH--HHHHhchHHHHHHHHHccC
Confidence 111 2234567777766665554
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.00 E-value=2.1 Score=32.73 Aligned_cols=51 Identities=24% Similarity=0.038 Sum_probs=23.3
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
+.++.+++..++..+.-.. |..+..-..-...+...|++.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4455555555555555432 11122212222334455555555555555544
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.82 E-value=0.16 Score=27.51 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 011362 418 DMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
..|...|.+.|++++|.+++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.70 E-value=1.2 Score=35.31 Aligned_cols=64 Identities=19% Similarity=0.338 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP--NVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...+..++..|.+.|+.+.|.+.|.++.+....+ -...+..+++.....+++..+...+.++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567777888888888888888888877764333 234566677777788888888777776654
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.69 E-value=5.7 Score=36.60 Aligned_cols=164 Identities=10% Similarity=0.098 Sum_probs=94.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.++....+..+.+.-++.-.++.+.+ +.-...|..|..- ......++.+++++..+.|- ..+..--
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE----~~lg~s~- 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGE----ASLGKSQ- 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHH----Hhhchhh-
Confidence 35555566677777677777766643 2223444433321 23456788888887766531 1111000
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCCHh
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR-PDAFTYNTLLDGFCLTGRVN 221 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 221 (487)
.....| ..++........|-...-..+..++-+.|+.++|++.+++|.+.... ....+...|+.++...+.+.
T Consensus 239 ~~~~~g------~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 239 FLQHHG------HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhccc------chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 000011 11111222222223334455777778999999999999999875322 24557788999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHH
Q 011362 222 HAKELFVSMESMGCKHT-VFSYSILI 246 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~~-~~~~~~l~ 246 (487)
++..++.+..+...+.+ ...|+..+
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHH
Confidence 99999999875543333 23455433
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.51 E-value=0.26 Score=26.16 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
.+|..++.+|...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677777788888888888888877765
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.48 E-value=0.26 Score=26.07 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
..|..+..++...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34666777777778888888777777765
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.44 E-value=2.7 Score=32.16 Aligned_cols=58 Identities=19% Similarity=0.035 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
++..-.+.++.+++..++.-+... .|... .-..-...++..|++.+|..+|+.+....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344445667777777777777655 33332 22233445567777777777777776643
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.19 E-value=2.1 Score=33.87 Aligned_cols=134 Identities=10% Similarity=0.025 Sum_probs=88.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTY--TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+..|..++.... .+.. +.....+++...+....-..+ ..+...+...+++++|...++.......+ -.....
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D----e~lk~l 127 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD----ENLKAL 127 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh----HHHHHH
Confidence 345666666543 4444 666666777665422222233 34567788899999999999987753310 011122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
.-..|.+.....|.+++|+..++.....+. .......-...+...|+-++|..-|+...+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334566778889999999999988776543 33445556778889999999999999988875
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.16 E-value=12 Score=38.63 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh--hHHHHHHHHH
Q 011362 208 NTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV--IHNTLFVGLF 285 (487)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 285 (487)
.+....+...+.+++|.-.|+..-+ ...-+.+|...|+|.+|+.+..++... .+.. +-..|...+.
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 3333444455555555555543321 122344555566666666665554321 1111 1134444455
Q ss_pred hcCCHHHHHHHHHHHH
Q 011362 286 EIHQVERAFKLFDEMQ 301 (487)
Q Consensus 286 ~~~~~~~a~~~~~~~~ 301 (487)
..+++-+|-++..+..
T Consensus 1011 e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HcccchhHHHHHHHHh
Confidence 5555555555554443
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.15 E-value=3.8 Score=33.03 Aligned_cols=187 Identities=10% Similarity=0.007 Sum_probs=104.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011362 70 RTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD 149 (487)
Q Consensus 70 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 149 (487)
..|-..-|.-=|.+..... |.-+.+||-+.-.+...|+++.|.+.|+...+.+.. ...+...-.-.+.-.|+
T Consensus 77 SlGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 77 SLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCc
Confidence 3444555555555555544 556788999998899999999999999998886432 22233333334456788
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHH-HHcCCCHhHHHHHH
Q 011362 150 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRL-LDLMIQHGVRPDAFTYNTLLDG-FCLTGRVNHAKELF 227 (487)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~ 227 (487)
+.-|.+-+...-+.... |+. -...+-.--..-++.+|..- .++..+. |..-|...+-. |...=..+.+.+-.
T Consensus 149 ~~LAq~d~~~fYQ~D~~-DPf-R~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~ 222 (297)
T COG4785 149 YKLAQDDLLAFYQDDPN-DPF-RSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERL 222 (297)
T ss_pred hHhhHHHHHHHHhcCCC-ChH-HHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHH
Confidence 88888877776655322 211 11122222233455555543 3444333 33333322222 22111122211111
Q ss_pred HHHHHcC---CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC
Q 011362 228 VSMESMG---CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 270 (487)
Q Consensus 228 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 270 (487)
..-...+ -..-..+|.-+...+...|+.++|..+|+-.+..++
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1111000 011246888999999999999999999999887643
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.14 E-value=0.25 Score=26.23 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=11.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
No 294
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.13 E-value=9.5 Score=37.52 Aligned_cols=199 Identities=17% Similarity=0.113 Sum_probs=112.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCH--HHHHHHHHHHH-ccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLR-VFGCEPDV--FTYTTLVNGLC-RTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
+...|..||.. |++.++-+. ....+|.. .++..++..+. ...+++.|...+++........+. ...
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~-~d~ 98 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL-TDL 98 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch-HHH
Confidence 45556555543 566666666 33333433 34556677666 788999999999987554311000 000
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHhhHHHH-HHHHHhcCChhhHHHHHHHHHHcC---CCCCh
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIKPNVVTYTSV-IRGFCYAKDWNEAKRLFIEMMDQG---VQPNV 169 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 169 (487)
--..-..++..+.+.+... |...+++..+. +..+-...|..+ +..+...+++..|.+.++.+.... ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 1122345667777776555 88888876653 111222233333 333333479999999999886542 22333
Q ss_pred hhHHHHHHHH--HhCCChHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHH--HcCCCHhHHHHHHHHHH
Q 011362 170 VTFNVIMDEL--CKNGKMDEASRLLDLMIQHG---------VRPDAFTYNTLLDGF--CLTGRVNHAKELFVSME 231 (487)
Q Consensus 170 ~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 231 (487)
.++..++.+. ...+..+++.+.++.+.... ..|-..++..++..+ ...|+++.+...++.+.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444433 35566777777777664321 123455666666654 46677777777666653
No 295
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.00 E-value=2.5 Score=33.01 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCCHH-------HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccC
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCA---ESRIM-------EAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTS 72 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~-------~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 72 (487)
++.|++.++.....+ |.|...++.-..++.. ..+.. +|+.-|++++.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 467888888877776 5577765554444443 33333 444445555554 344 356666777665443
Q ss_pred C-----------hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 73 H-----------TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 73 ~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
. +++|...|++... ..|+...|+.-+...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--------~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--------EDPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--------H-TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--------cCCCcHHHHHHHHHH
Confidence 2 3445555555554 245556666555544
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=1.3 Score=37.64 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=59.5
Q ss_pred CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC---CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHH
Q 011362 304 GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC---EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVV 380 (487)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 380 (487)
|.+....+....+..-....+++.++..+-+++...- .++. +-...++.+ -.-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 3344444455555554556677777777766653210 0111 111222222 2345667777777777777777777
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
+++.++..+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777776666543
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.75 E-value=1.3 Score=35.37 Aligned_cols=74 Identities=7% Similarity=-0.126 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHccCChHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFG---CEPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
-+.|+..|-.+...+.-.++.....|+..|. ..+.++++.++.+.++.. -.+|+..+..|+..+.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3568888888887765556777777666665 778899999998887652 2567888999999999999988874
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.74 E-value=2.5 Score=33.49 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=66.3
Q ss_pred CCccchHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD----AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 76 (487)
.|+|++|..-|..++...++.. ...|..-..++.+.+.++.|+.--.+.++.+ +....++..-..+|-+...+++
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ee 186 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEE 186 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHH
Confidence 3889999999999999864433 2344445667889999999999988888875 3334444455667888899999
Q ss_pred HHHHHHHHHhCC
Q 011362 77 ALNLFEEMANGN 88 (487)
Q Consensus 77 a~~~~~~~~~~~ 88 (487)
|+.=|.++....
T Consensus 187 aleDyKki~E~d 198 (271)
T KOG4234|consen 187 ALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHhC
Confidence 999999998865
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.69 E-value=0.31 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=11.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
|..+..++...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.65 E-value=10 Score=36.68 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-----HhcCChhhHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhC
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGF-----CYAKDWNEAKRLFIEMMD-------QGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 182 (487)
...+.++++...+.| +......+..++ ....+.+.|+.+|+.+.. .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888887776 333333333333 345688899998888866 44 333455666777664
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----cc
Q 011362 183 G-----KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL-TGRVNHAKELFVSMESMGCKHTVFSYSILINGYC----KN 252 (487)
Q Consensus 183 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 252 (487)
. +...|..++...-..|.+ +.......+..... ..+...|.++|...-..|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 556688888887776543 43333222222222 24567888888888777632 23333333332 23
Q ss_pred CCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011362 253 KEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG 304 (487)
Q Consensus 253 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (487)
.+.+.|..++.+..+.|.. ........+..+.. +.++.+...+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 4677888888887777622 22222222222333 55665555555555443
No 301
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.56 E-value=7.2 Score=34.62 Aligned_cols=108 Identities=10% Similarity=-0.005 Sum_probs=71.6
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 011362 10 VLGRILKSCFTPDAVTFTSLIKGLCAESR------------IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVA 77 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 77 (487)
-|++.++.. |.|+.+|..++..--..-. .+.-+.+++++++.+ +.+...+...+..+.+..+.++.
T Consensus 7 el~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 456666665 5589999888865433221 345577888877774 45666677777888888888888
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc---CChhHHHHHHHHHH
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE---GFVDKAKELLLQMK 126 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 126 (487)
.+.++++.... +.+...|...+...... -.++....+|.+..
T Consensus 85 ~~~we~~l~~~-------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 85 AKKWEELLFKN-------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHC-------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88888888765 45677777777665442 23555655555543
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.51 E-value=7.8 Score=35.44 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=83.6
Q ss_pred HHHHHhcCChhHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 106 IDGLCKEGFVDKAKE-LLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
|.--...|++..|-+ ++..+... +.++.........+...|+++.+.+.+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 333344577666544 44444443 223333334445566789999999988776543 33355677788899999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
++.|...-..|+...++ ++.+........-..|-++++...++++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999999887665 55544444444456677889999888887654
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.98 E-value=14 Score=36.78 Aligned_cols=223 Identities=15% Similarity=0.097 Sum_probs=114.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHh-------hHHHH-HHHHHhcCChhhHHHHHHHHHHcC----CCCChhhHHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVV-------TYTSV-IRGFCYAKDWNEAKRLFIEMMDQG----VQPNVVTFNVIM 176 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 176 (487)
.....++.+|..++.++...-..|+.. .|+.+ .......|++++|.++.+.....- ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888876542222211 23322 223345788899988888776541 223455566677
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH---H--HHHHHcCCCHh--HHHHHHHHHHHcC---CCC---CHhhHH
Q 011362 177 DELCKNGKMDEASRLLDLMIQHGVRPDAFTYNT---L--LDGFCLTGRVN--HAKELFVSMESMG---CKH---TVFSYS 243 (487)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~--~a~~~~~~~~~~~---~~~---~~~~~~ 243 (487)
.+..-.|++++|..+.....+..-..+...+.. + ...+...|+.. +....+....... .+. -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 778888999999888876665422223332222 2 23345666332 2233333332211 011 122334
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHH----CCCccChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----cHHhHH
Q 011362 244 ILINGYCKNKEIEGALSLYSEMLS----KGIKPDVVI--HNTLFVGLFEIHQVERAFKLFDEMQRNGVAA----DTWTYR 313 (487)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 313 (487)
.+..++.+ .+.+..-...-.+ ....|-... +..++......|+.++|...+.++......+ +..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 3333322222221 112222222 2356777778899999988888876543222 211111
Q ss_pred HH--HHHHHhCCCHhHHHHHHHH
Q 011362 314 TF--IDGLCKNGYIVEAVELFHT 334 (487)
Q Consensus 314 ~l--~~~~~~~~~~~~a~~~~~~ 334 (487)
.. +......|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22 2233456777777666655
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.94 E-value=1.9 Score=33.64 Aligned_cols=110 Identities=19% Similarity=0.115 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----------CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 39 IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT----------SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 39 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|+.|.+.++.-...+ +.|...++.-..++... ..+++|+.-|++....+ |....++..+..+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------P~~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------PNKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHH
Confidence 556677666655554 56666655544444322 23556777777777755 4456778788777
Q ss_pred HHhcC----C-------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 109 LCKEG----F-------VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 109 ~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
|...+ + +++|.+.|++.... .|+...|+.-+... .+|-.+..++.+++
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 76643 2 44555555555543 57777777766655 24556666665553
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.82 E-value=5 Score=31.21 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=14.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 48 KLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 48 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.+.+.+++|+...+..++..+.+.|++....+
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33334444444444444444444444443333
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.75 E-value=5.1 Score=31.16 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=50.4
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNV 174 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 174 (487)
++++...+..++..+.+.|++.....+ .+.++-+|.......+-.+ .+....+.++--+|... =...+..
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR----L~~~~~~ 94 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR----LGTAYEE 94 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH----hhhhHHH
Confidence 455555666666666666654333322 2333333333332222221 11222333333333221 0012344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 175 IMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
++..+...|++-+|+++.+..... +......++++....+|...-..+++-.
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666655543221 1111233444445555544444444433
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.53 E-value=5.9 Score=31.45 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=84.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch-HH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT-VT--YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
|..++.... .+.+ +.....+++...+ +.+. .. -..+...+...|++++|...++..... |....+
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n-------~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~l 124 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQAN-------GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENL 124 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhc-------cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHH
Confidence 444444432 3333 4555556666655 2233 23 334567788999999999999988754 223333
Q ss_pred -----HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 011362 138 -----TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHG 199 (487)
Q Consensus 138 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 199 (487)
..|.+.....|.+++|+.+++.....+. .......-...+...|+-++|..-|...+..+
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3356778899999999999998766532 22234445668999999999999999998875
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.53 E-value=3.4 Score=28.66 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 397 KARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+..- .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455556666666666777777777777777777777777777666432 222335555554
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.44 E-value=3.4 Score=32.81 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=41.5
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA 147 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 147 (487)
+...|++++|..-|..++..-+... .......|..-..++.+.+.++.|+.-..+.++.+. ........-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~--~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTS--TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCcccc--HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 3445555555555555554431100 001112333334445555555555555555554421 1222222333445555
Q ss_pred CChhhHHHHHHHHHHc
Q 011362 148 KDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~ 163 (487)
..+++|+.-|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555665555555553
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=4.6 Score=37.99 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=86.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch-HHHHHHHHHHHhc
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT-VTYTTIIDGLCKE 112 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 112 (487)
.-.|+++.|..++-.+. ....+.++.-+-++|-.++|+++- +|. .-|. ...+.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------------~D~d~rFe----lal~l 650 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------------TDPDQRFE----LALKL 650 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------------CChhhhhh----hhhhc
Confidence 44567776666543322 233445566666677777666532 121 1222 22355
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 192 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 192 (487)
|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 651 grl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred CcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 77777777654432 456677788888888888888887776543 445666666667666555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 193 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
....+.|.. |.. ..++...|+++++.+++..-
T Consensus 716 ~~~~~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGKN-NLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhccc-chH-----HHHHHHcCCHHHHHHHHHhc
Confidence 555555432 221 23345567777777766443
No 311
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.29 E-value=11 Score=34.69 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=25.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 112 EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 112 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
.+.++...+.+..+...|.......++.-...|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 456777777777777776555555566666666666654
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.28 E-value=9.4 Score=33.30 Aligned_cols=129 Identities=12% Similarity=0.176 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCCC---CcHHhHHHHHHHHHhCCC---
Q 011362 257 GALSLYSEMLSKGIKPDVVIHNTLFVGLFE--I----HQVERAFKLFDEMQRNGVA---ADTWTYRTFIDGLCKNGY--- 324 (487)
Q Consensus 257 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~--- 324 (487)
..+.+++.+.+.|+..+..++......... . ....++..+++.|++...- ++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666555444332222211 1 1235667777777765322 222333333222 2222
Q ss_pred -HhHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCC--HHHHHHHHHhccCCCCCCcHHHHHHHHH
Q 011362 325 -IVEAVELFHTLRILKCEFD--IRAYNSLIDGLCKSGR--LEIALELFRSLPCGVLVPNVVTYSIMIG 387 (487)
Q Consensus 325 -~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 387 (487)
.+.++.+|+.+.+.|+..+ ......++..+..... ..++.++++.+.+.++++....|..++-
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3455666666666555432 2333333332222212 3466777777777777766666655543
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.25 E-value=0.59 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRV 51 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 51 (487)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777788888888877777654
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=4.2 Score=34.86 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=86.5
Q ss_pred HHHHHHccCCHhHHHHHHHHHHH----------CCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcHHh
Q 011362 245 LINGYCKNKEIEGALSLYSEMLS----------KGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG---VAADTWT 311 (487)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 311 (487)
|..+|.....|+.-....-.+-. .|.+.+..+...++.......+++.+...+-++.... ..++ .+
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WT 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-cc
Confidence 45556666666554443322222 2344455566666666667788888888887776541 1111 12
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 011362 312 YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374 (487)
Q Consensus 312 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (487)
....++.+. .-++++++.++..-+..|+-||..+++.+++.+.+.+++.+|..+...|...+
T Consensus 104 ~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 233344333 45677999999998999999999999999999999999999999887776543
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.88 E-value=2.1 Score=29.25 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 38 RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
+.-++.+.++.+.....-|++.+..+.+++|.+.+++..|.++|+.+...- ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 445677788888888888999999999999999999999999999887543 223445555543
No 316
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.79 E-value=13 Score=34.18 Aligned_cols=108 Identities=17% Similarity=-0.011 Sum_probs=61.6
Q ss_pred HHHhCCCHhHHHHHHHHHHH---cCCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHhccC-------CCCCCc----
Q 011362 318 GLCKNGYIVEAVELFHTLRI---LKCEFD-----IRAYNSLIDGLCKSGRLEIALELFRSLPC-------GVLVPN---- 378 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~---- 378 (487)
.+.-.|++.+|.+++...-- .|...+ -..||.+...+.+.|.+..+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34456777777777654321 111112 12345555555666666666666655542 233332
Q ss_pred ------H-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011362 379 ------V-VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRI 427 (487)
Q Consensus 379 ------~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (487)
. .+|| ..-.|...|++-.|.+.|.+.... +.-++..|..+..+|...
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 1 1233 334567788888888888877664 455777888888777643
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.40 E-value=0.77 Score=25.61 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=13.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555553
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.27 E-value=0.61 Score=26.63 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=13.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 011362 420 LIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
+.++|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 319
>PRK09687 putative lyase; Provisional
Probab=90.07 E-value=12 Score=32.44 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=82.3
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHhccCCCCCCcHHHHHHHH
Q 011362 308 DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG-RLEIALELFRSLPCGVLVPNVVTYSIMI 386 (487)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 386 (487)
+..+-...+.++.+.++ .++...+-.+.+ .++...-...+.++...+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44555556666666665 345555555554 234444444445555432 23455555555553 34666666777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011362 387 GGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAK 461 (487)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (487)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|+. +|...+.++.+. .||..+....+++|.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 77777777 45666666665532 2 234566777788875 688888888763 3577777777777654
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.00 E-value=0.7 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
+-.+..++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566777777777787777777765
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.89 E-value=6.9 Score=31.38 Aligned_cols=74 Identities=12% Similarity=-0.083 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHH
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKA 118 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 118 (487)
+|.+.|-.+...+.--++.....+...|. ..+.+++++++....+..... -.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~---~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD---DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444433333333333333332 344455555544444432110 133444555555555555544443
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=11 Score=35.71 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=22.5
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+..
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 445555555444332 133445555555555555555555555444
No 323
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.03 E-value=14 Score=31.68 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-----HHhcCCCCCH
Q 011362 376 VPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN-AVVPNVITFDMLIRGFIRINEPSKVIELLHK-----MKEINVMPDA 449 (487)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~ 449 (487)
.++..+...++..++..+++.+-.++|...... +..-|..-|..+++.....|+..-...+..+ +++.|+..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 566677778888888888888888888877655 4555777788888888888888777777665 2356777777
Q ss_pred HHHHHHHHHHHhc
Q 011362 450 SIVSIVVDLLAKN 462 (487)
Q Consensus 450 ~~~~~l~~~~~~~ 462 (487)
..-..+-+.+.+.
T Consensus 279 ~L~~~L~~LF~~v 291 (292)
T PF13929_consen 279 ELRSQLSELFKKV 291 (292)
T ss_pred HHHHHHHHHHHhc
Confidence 7777766666543
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.99 E-value=1.3 Score=23.27 Aligned_cols=28 Identities=21% Similarity=0.072 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
+|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4666777777777777777777776654
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.60 E-value=18 Score=32.58 Aligned_cols=65 Identities=22% Similarity=0.106 Sum_probs=47.1
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC---ChHhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 308 DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEF---DIRAYNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
...++..++..+.+.|.++.|...+..+...+... .+.....-+......|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44667788888888999999998888887643211 344444556666778888888888887776
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.45 E-value=5.2 Score=32.39 Aligned_cols=79 Identities=16% Similarity=0.074 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
.+..++.+.+.+...+|+...+.-.+.. +.|...-..++..++-.|++++|..-++-.-+..+. ..+....|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~----~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ----DTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc----cchHHHHHHHH
Confidence 4556777888999999999888877663 455666778899999999999998888777665422 24456677777
Q ss_pred HHHH
Q 011362 106 IDGL 109 (487)
Q Consensus 106 ~~~~ 109 (487)
|.+-
T Consensus 79 ir~e 82 (273)
T COG4455 79 IRCE 82 (273)
T ss_pred HHHH
Confidence 7653
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.26 E-value=35 Score=35.49 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh----HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 011362 279 TLFVGLFEIHQVERAFKLFDEMQRNGVAADTWT----YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL 354 (487)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (487)
.......+++.+..|+.++ .|+... |......+.....+++|.-.|+..-+. .-.+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence 3333344455555555443 344433 344444555667777777766654321 2345677
Q ss_pred HhcCCHHHHHHHHHhccCCCCCCcHH--HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 355 CKSGRLEIALELFRSLPCGVLVPNVV--TYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
...|++.+|..+..++... -+.. +-..|+.-+..++++-+|-++..+...
T Consensus 976 ~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 7888888888887777632 1221 225566777778888888888777664
No 328
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.10 E-value=9.2 Score=32.36 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
.-|+++...++|.+++.+.-+--+..-+..+.+...-|-.|.+.+.+..+.++-....+..+ ......|..++.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~------Nq~lp~y~~vaE 161 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS------NQSLPEYGTVAE 161 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc------cCCchhhHHHHH
Confidence 34788999999999888765554432233455566667788899999999998888887652 233445777766
Q ss_pred HHHh-----cCChhHHHHHH
Q 011362 108 GLCK-----EGFVDKAKELL 122 (487)
Q Consensus 108 ~~~~-----~g~~~~a~~~~ 122 (487)
.|.. .|.+++|+++.
T Consensus 162 LyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 162 LYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhccccHHHHHHHH
Confidence 6554 68888888876
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.98 E-value=6.8 Score=26.94 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
+.-++.+-++.+....+.|++....+.+++|.+.+|+.-|.++++-.+..- ..+..+|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 344556666666666677777777777777777777777777777666321 224445655554
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.57 E-value=10 Score=28.64 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=36.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..-...++++++..++..|.-. .|+.. .-..-...+...|++.+|..+|+.+.+..
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3344578888888888887765 33322 22233445677888888888888887754
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.46 E-value=1 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 011362 27 TSLIKGLCAESRIMEAAALFT 47 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~ 47 (487)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.42 E-value=15 Score=30.27 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=29.5
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 011362 105 IIDGLCKE-GFVDKAKELLLQMKDK--NIKPN---VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 105 l~~~~~~~-g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
+...|-.. .++++|+..|+..-+. |-..+ ...+..+...-...+++.+|+++|++.......
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444333 4556666666554332 11111 112222333344566677777777776655433
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.37 E-value=5.1 Score=32.41 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHH
Q 011362 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN--IKPNVVTYTS 139 (487)
Q Consensus 62 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ 139 (487)
...+..+.+.++..+++...+.-.+.. |.+...-..++..++-.|++++|..-++..-+.. ..+-...|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 344556667777888888777776665 5566667777777888888888877666554431 2223445555
Q ss_pred HHHH
Q 011362 140 VIRG 143 (487)
Q Consensus 140 l~~~ 143 (487)
++++
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 5544
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.35 E-value=32 Score=33.95 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=67.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEP---DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
+..+.+.+.+++|+.+.+..... .| -.......+..+...|++++|-...-.|... +..-|...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----------~~~eWe~~V 430 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----------NAAEWELWV 430 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----------hHHHHHHHH
Confidence 56677888888888877665432 33 2345667778888889999988888888753 466777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY 146 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 146 (487)
..+...++......+ +.......+..+|..++..+..
T Consensus 431 ~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 431 FKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 777766665543333 3332222456677777777665
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.25 E-value=58 Score=36.92 Aligned_cols=60 Identities=10% Similarity=-0.062 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
.+|....+.....|+++.|...+-...+.+ -+..+...+..+...|+...|+.++++...
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 556666666667888888877776666554 234455566667778888888888877664
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.14 E-value=2 Score=22.53 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=13.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555443
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.04 E-value=18 Score=30.88 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=54.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHHH
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-----EINVMPDASIVS 453 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 453 (487)
++.....|..+|.+.+|..+-++.+... +.+...+-.++..+...||--.+.+-++++. +.|+..|..+..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4556677888999999999999988753 3466677788889999999888888777775 467777766654
No 338
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.68 E-value=36 Score=33.87 Aligned_cols=372 Identities=10% Similarity=0.002 Sum_probs=174.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGL---CRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
-+...+..|+..+.+.|++++....-..|.+.- +.++..|...+... ...+....+..+|++..... .
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--------~ 181 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--------N 181 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--------c
Confidence 356677889999999999988877777776653 45556665544433 34577888899999888755 2
Q ss_pred chHHHHHHHHHHH-------hcCChhHHHHHHHHHHhC-CCCC--CHhhHHH---HHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 98 NTVTYTTIIDGLC-------KEGFVDKAKELLLQMKDK-NIKP--NVVTYTS---VIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 98 ~~~~~~~l~~~~~-------~~g~~~~a~~~~~~~~~~-~~~~--~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
++..|.-.+..+. ..++++....+|++.+.. |... -...|.. +-..|..+-..++...++..-...+
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 3444444443332 346677888888877653 2211 1222322 2233444444566666666655543
Q ss_pred CCCChhhHHHHHHHHHh-------CCChHHHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 165 VQPNVVTFNVIMDELCK-------NGKMDEASRL-------LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 165 ~~~~~~~~~~l~~~~~~-------~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
. |..+-..-+.-..+ ..+++.+.+- ++...+. ..+-...|..++..+-..|++-....+++++
T Consensus 262 ~--D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 262 L--DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred c--hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2 22221111111111 1122222222 2222221 1222345566666777777776666666665
Q ss_pred HHcCCCCCHhhHHHHHHHH-HccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHc-----
Q 011362 231 ESMGCKHTVFSYSILINGY-CKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV-ERAFKLFDEMQRN----- 303 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~----- 303 (487)
.... ..+...|....... ...+-.+.+...+...... ++-...+|...+-++.+.+.. ......|......
T Consensus 339 ~~E~-~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~ 416 (881)
T KOG0128|consen 339 VAEM-VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELH 416 (881)
T ss_pred HHhc-cccHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Confidence 4332 12222221111000 0011111222222221111 000111222222222222111 1111111111111
Q ss_pred ----------CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH-HhcCCHHHHHHHHHhccC
Q 011362 304 ----------GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL-CKSGRLEIALELFRSLPC 372 (487)
Q Consensus 304 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~ 372 (487)
+...+...|..+- ..+..|...|.........+............ ...++.+.+..+|+.+..
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr------~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLR------AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHH------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 1111111122211 12444555554444332223333333333333 346789999999998887
Q ss_pred CCCCCcHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011362 373 GVLVPNVV-TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN 413 (487)
Q Consensus 373 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 413 (487)
.+ .-+.. .|...+..-...|+...+..+++.+...-..|+
T Consensus 491 y~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 491 YG-GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred CC-cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 65 22333 565566666667888888888888776545554
No 339
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.27 E-value=8.3 Score=28.00 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 398 ARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 398 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
..+-++.+....+.|++.....-+++|.+.+|+.-|.++++-.+.. ..+...+|..+++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 3444555555556666666666666666666666666666666532 2333334544443
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.20 E-value=13 Score=28.22 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=26.7
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
..++++++..++..+.-.. |.....-..-...+...|++++|..+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665442 111111112223345666666666666666654
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.10 E-value=9.3 Score=26.61 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 26 FTSLIKGLCAESRI--MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 26 ~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
|.+--..+....+. -+..+-++.+.....-|++.+..+.+++|.+.+++..|.++|+.+...- ......|.
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-------~~~~~~Y~ 83 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-------GNKKEIYP 83 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------TT-TTHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cChHHHHH
Confidence 33333444444433 3677788888888888999999999999999999999999999888754 22233566
Q ss_pred HHHH
Q 011362 104 TIID 107 (487)
Q Consensus 104 ~l~~ 107 (487)
.+++
T Consensus 84 ~~lq 87 (108)
T PF02284_consen 84 YILQ 87 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.98 E-value=6.3 Score=34.27 Aligned_cols=54 Identities=7% Similarity=-0.073 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
.-|.++|.+++|+..|.+..... +-++..+..-..+|.+..++..|..=.+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555566666666665554432 2244555555555555555555544444433
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.75 E-value=5.8 Score=34.48 Aligned_cols=94 Identities=15% Similarity=-0.020 Sum_probs=60.9
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCH
Q 011362 316 IDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQM 395 (487)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (487)
..-|.++|.+++|+..|....... +.++..+..-..+|.+...+..|..-...++..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 345888889999999888877654 4477777777888888888888777666665432 11122344444444445666
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 011362 396 DKARDLFLDMEENAVVPN 413 (487)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~ 413 (487)
.+|.+-++..++ +.|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 666666666665 3455
No 344
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=85.43 E-value=41 Score=33.45 Aligned_cols=370 Identities=12% Similarity=0.031 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCC
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC---KEGFVDKAKELLLQMKDKNIKPN 133 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~ 133 (487)
+...+..|+..+.+.|++++....-..|...- |.++..|...+.... ..+....+..+|++....-. +
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-------pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~ 182 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-------PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--S 182 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--c
Confidence 44567788999999999998877777777754 667788877766443 34667778888887765422 4
Q ss_pred HhhHHHHHHHHH-------hcCChhhHHHHHHHHHHc-CCCCC--hh---hHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 011362 134 VVTYTSVIRGFC-------YAKDWNEAKRLFIEMMDQ-GVQPN--VV---TFNVIMDELCKNGKMDEASRLLDLMIQHGV 200 (487)
Q Consensus 134 ~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~-~~~~~--~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 200 (487)
+..|.-.+..+. ..++++....+|.+.... |...+ .. .|..+-..|...-..++...++..-+..+.
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~ 262 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL 262 (881)
T ss_pred chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 444544444333 345677778888877653 22111 11 222222344444445666777766665542
Q ss_pred CCCHHHHHHHHHHHH-------cCCCHhHHHHHHHHH-------HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 201 RPDAFTYNTLLDGFC-------LTGRVNHAKELFVSM-------ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 201 ~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
|..+-..-+.-.. ...+++.+..-+... ... .++--..|..++......|++-.....++++.
T Consensus 263 --D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 263 --DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred --hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2222111111111 122333333332222 111 13334456777777788888877777777766
Q ss_pred HCCCccChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHH-HHHHHHHH-------
Q 011362 267 SKGIKPDVVIHNTLFVGLF--EIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEA-VELFHTLR------- 336 (487)
Q Consensus 267 ~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~------- 336 (487)
..... +...|.... .|. ..+-.+.+...+.....+ .+....++...+.++.+.+..... ...+....
T Consensus 340 ~E~~~-~~~~wi~y~-~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~ 416 (881)
T KOG0128|consen 340 AEMVL-DRALWIGYG-VYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELH 416 (881)
T ss_pred Hhccc-cHHHHhhhh-hhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Confidence 54221 222221111 010 011111222222222221 111222222222233332221111 11111111
Q ss_pred --------HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH-HccCCHHHHHHHHHHHHh
Q 011362 337 --------ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL-CNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 337 --------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 407 (487)
..+...+...|..+- ..+..|...|.........+...+........ ...++.+.++.+|+....
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr------~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLR------AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHH------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 111111111121111 12444555555444321223333333333333 347889999999999887
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 011362 408 NAVVPNVI-TFDMLIRGFIRINEPSKVIELLHKMKEINVMPD 448 (487)
Q Consensus 408 ~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (487)
.|.. +.. .|...+..-...|+...+..+++.+...-..|+
T Consensus 491 y~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 491 YGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred CCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 6433 333 555556655677888888888888876555554
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.28 E-value=2.5 Score=24.19 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFG 53 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 53 (487)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36788899999999999999888643
No 346
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.20 E-value=0.37 Score=36.69 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=43.4
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCC
Q 011362 315 FIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ 394 (487)
Q Consensus 315 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (487)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3444555566666666666666554445566666666666666655666665552221 111234444455555
Q ss_pred HHHHHHHHHH
Q 011362 395 MDKARDLFLD 404 (487)
Q Consensus 395 ~~~A~~~~~~ 404 (487)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 347
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.09 E-value=42 Score=33.25 Aligned_cols=376 Identities=12% Similarity=0.029 Sum_probs=170.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 32 GLCAESRIMEAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 32 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
...+.|++..+.++...+... +.. -..|..+... .....+++...++++-.. .|.....-...+..+.
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~--pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--------~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDY--PLYPYLEYRQLTQD-LMNQPAVQVTNFIRANPT--------LPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCC--CcHhHHHHHHHHhc-cccCCHHHHHHHHHHCCC--------CchHHHHHHHHHHHHH
Confidence 345777787777776665422 111 1112222211 122245554444444332 1233333444555666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHH--
Q 011362 111 KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA-- 188 (487)
Q Consensus 111 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-- 188 (487)
+.+++......+. . .+.+...-...+.+....|+.++|......+-..|.. .+..+..++..+.+.|.....
T Consensus 111 ~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 111 RREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHH
Confidence 6777776665321 1 2345555666777777888877777777776555433 455566777777665554332
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHc------------CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH--HccCC
Q 011362 189 SRLLDLMIQHGVRPDAFTYNTLLDGFCL------------TGRVNHAKELFVSMESMGCKHTVFSYSILINGY--CKNKE 254 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 254 (487)
.+-++.+...| +......+...... ..+...+...+. ..+++...-..++.++ ....+
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhC
Confidence 22222222222 11111111111100 001111111110 0112221111111111 23445
Q ss_pred HhHHHHHHHHHHHCC-CccCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHH
Q 011362 255 IEGALSLYSEMLSKG-IKPDV--VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVEL 331 (487)
Q Consensus 255 ~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 331 (487)
.+.|..++....... ..+.. .+...+.......+...++...+...... ..+......-+..-...++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 577777777654332 21111 12222222222222234444444443322 12333333334444466677666666
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC------------CCC--------CcH-H-----HHHHH
Q 011362 332 FHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG------------VLV--------PNV-V-----TYSIM 385 (487)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~--------~~~-~-----~~~~l 385 (487)
+..|.... .....-.--+..++...|+.++|...|+.+... |.+ |.. . .--.-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 66654322 222333334455555567777777766665321 100 000 0 00112
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011362 386 IGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLH 438 (487)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (487)
+..+...|+...|...+..+... .+......+.......|.++.+.....
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 34456678888888888877764 244444555555556676666655443
No 348
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.61 E-value=30 Score=31.15 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=46.4
Q ss_pred CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011362 237 HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
....++..++..+.+.|.++.|...+..+...+... .+......+...-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567778888888888888888888877643221 334445556666777888888888877766
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.26 E-value=2 Score=22.27 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=11.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 011362 385 MIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
+..++.+.|++++|...|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444555555555554443
No 350
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.88 E-value=9 Score=36.07 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=77.3
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|+...|.+.+..+....+...-+..-.|.+...+.|-..+|-.++.+.+... ...+-++..+.+++....+.+.|++.|
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 6777788888888776544344456667888889999999999999888765 455667888999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
+.+.+.. +.+...-+.|...-|
T Consensus 700 ~~a~~~~-------~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 700 RQALKLT-------TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHhcC-------CCChhhHHHHHHHHH
Confidence 9998876 555666665554433
No 351
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.05 E-value=0.76 Score=34.95 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=46.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +......++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34455556666677777777765544445666677777777776666666665511 11223345555555555
Q ss_pred hHHHHHHHHH
Q 011362 185 MDEASRLLDL 194 (487)
Q Consensus 185 ~~~a~~~~~~ 194 (487)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.82 E-value=94 Score=35.49 Aligned_cols=318 Identities=13% Similarity=0.063 Sum_probs=165.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.+..+-.+.+.+.+|...+++-.....+ .......+..+...|...+++|....+...-.. +...+. -+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHH
Confidence 4455666888999999999984221100 012234455555599999999998888764211 223333 344
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHcCCCHh
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTL-LDGFCLTGRVN 221 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 221 (487)
.....|+|..|...|+.+.+.+.+ ...+++.++......|.+....-..+-.... ..+....++.+ ..+-=+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchh
Confidence 456789999999999999886422 4667888888777888888877766655443 22222333322 23334666777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHH--HHHHHHc--cCCHhHHHHHHHHHHHCCCcc--------C-hhhHHHHHHHHHhcC
Q 011362 222 HAKELFVSMESMGCKHTVFSYSI--LINGYCK--NKEIEGALSLYSEMLSKGIKP--------D-VVIHNTLFVGLFEIH 288 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~ 288 (487)
.....+. +. +...|.. ++....+ ..|.-.-.+.++.+.+.-+.| + ...|..++..+.-.
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~- 1607 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL- 1607 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-
Confidence 6666554 11 1222222 2222222 222211112333322211110 0 01222222221111
Q ss_pred CHHHHHHHHHHHHHcCCCCcH------HhHHHHHHHHHhCCCHhHHHHHHHHH-HHcCC-----CCChHhHHHHHHHHHh
Q 011362 289 QVERAFKLFDEMQRNGVAADT------WTYRTFIDGLCKNGYIVEAVELFHTL-RILKC-----EFDIRAYNSLIDGLCK 356 (487)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~~ 356 (487)
+.....+.... ..++. .-|..-+..-....+..+-+-.+++. ..... .--..+|....+....
T Consensus 1608 ---el~~~~~~l~~--~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1608 ---ELENSIEELKK--VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred ---HHHHHHHHhhc--cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 11111111111 11111 11111221111111122222222221 11111 2235678888888888
Q ss_pred cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 357 SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
.|.++.|...+-.+.+.+ .| ..+--.+......|+-..|+.++++..+.
T Consensus 1683 aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999998887777664 33 34445667788999999999999998854
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.62 E-value=41 Score=31.14 Aligned_cols=127 Identities=9% Similarity=-0.054 Sum_probs=83.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
|.-....|+...|-+-+...++.. +.++.........+...|.++.+.+.+....+.- .....+...+++..
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-------~s~~~~~~~~~r~~ 367 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-------GTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-------cCCchHHHHHHHhh
Confidence 344456778777755444444332 3333333334455667899999988887665542 44567778888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 165 (487)
...|+++.|...-+-|....+. +++.........-..|-++++.-.|+++...+.
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 8899999999998888876554 444444444444456778888888888776543
No 354
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.12 E-value=8.7 Score=23.09 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=17.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 011362 420 LIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIV 455 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (487)
+.-++.+.|++++|.+..+.+++ +.|+..-...+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34455666666666666666665 34554444433
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.02 E-value=29 Score=29.54 Aligned_cols=87 Identities=14% Similarity=0.047 Sum_probs=49.8
Q ss_pred HHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH-----
Q 011362 246 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC----- 320 (487)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 320 (487)
|.++...++|.+++...-+.-..--+..+.+....|-.|.+.+.+..+.++-.......-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566677777777776665554432222233445555567777777777777666655322222233555555443
Q ss_pred hCCCHhHHHHHH
Q 011362 321 KNGYIVEAVELF 332 (487)
Q Consensus 321 ~~~~~~~a~~~~ 332 (487)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777777666
No 356
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=81.56 E-value=55 Score=31.99 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=18.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKL 49 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 49 (487)
+..|+ .+..+.-+|.+++|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56677 577788889999999988443
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.07 E-value=6.5 Score=25.85 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHH
Q 011362 391 NDGQMDKARDLFLDMEENAVVPN--VITFDMLIRGFIRINEPSKVIELL 437 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 437 (487)
...+.++|+..|...++.-..+. ..++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888776533322 245667777788888887766653
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.98 E-value=62 Score=32.16 Aligned_cols=76 Identities=11% Similarity=-0.079 Sum_probs=47.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.....+.+.+++...+.++.. .|.+...-..+..+....|+.++|......+-..|. ..+.....++.
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~-----------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~ 171 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPE-----------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFS 171 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHH
Confidence 344455666777666652211 245566667777888888888777777776655543 24556666777
Q ss_pred HHHhcCCh
Q 011362 143 GFCYAKDW 150 (487)
Q Consensus 143 ~~~~~~~~ 150 (487)
.+.+.|..
T Consensus 172 ~~~~~g~l 179 (644)
T PRK11619 172 VWQQSGKQ 179 (644)
T ss_pred HHHHcCCC
Confidence 66655543
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.04 E-value=4.1 Score=20.26 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
+|..+...+...|++++|...|+..++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4666777788888888888888777654
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.65 E-value=73 Score=32.21 Aligned_cols=228 Identities=15% Similarity=0.098 Sum_probs=122.7
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChh-------hHHHHHH-HHHhCCChHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQGVQPNVV-------TFNVIMD-ELCKNGKMDEASRLLDLMIQH----GVRPDAFTYNTL 210 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 210 (487)
......++.+|..++.++...-..|+.. .++.+-. .....|+++.+.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456788999999998886643332222 2333322 334678899999988877664 123345566777
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHH---H--HHHHHccCCHh--HHHHHHHHHHHCC--Cc----cChhhH
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSI---L--INGYCKNKEIE--GALSLYSEMLSKG--IK----PDVVIH 277 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~--~a~~~~~~~~~~~--~~----~~~~~~ 277 (487)
..+..-.|++++|..+.....+..-..+...+.. + ...+...|+.. ..+..+....... -. +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7888889999999998887765422233333322 2 22344566332 2333333332210 01 112334
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcHHh--HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC----ChHhHHHH
Q 011362 278 NTLFVGLFEIH-QVERAFKLFDEMQRNGVAADTWT--YRTFIDGLCKNGYIVEAVELFHTLRILKCEF----DIRAYNSL 350 (487)
Q Consensus 278 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 350 (487)
..++.++.+.. ...++..-+.-.......|-... +..++......|+.++|...+.++......+ +..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 44455554411 11222222222222211222222 2367778888999999999998887543222 22222222
Q ss_pred HH--HHHhcCCHHHHHHHHHhc
Q 011362 351 ID--GLCKSGRLEIALELFRSL 370 (487)
Q Consensus 351 ~~--~~~~~g~~~~a~~~~~~~ 370 (487)
+. .....|+...+.....+-
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhc
Confidence 22 234578888877777663
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.45 E-value=7.5 Score=25.56 Aligned_cols=51 Identities=10% Similarity=-0.036 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPD--VFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
+..| ..++.++|+..|...++.-..+. -.++..++.+|+..|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 78889999999999987743322 125667888999999998877754
No 362
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.98 E-value=57 Score=30.60 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=86.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILIN 247 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (487)
|......++..+.....+.-+..+..+|..-|- +-..+..++++|... ..++-..+++++.+..+ .+...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 444445555555555555556666666665432 445556666666655 34555566665555432 12222233333
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcHHhHHHHHHHHHh
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPD-----VVIHNTLFVGLFEIHQVERAFKLFDEMQRN-GVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 321 (487)
.|-+ ++.+++...|.++...-++.. ...|..+... -..+.+....+...+... |..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 666666666666554322100 0122222211 123444444444444332 222222334444455566
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL 354 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (487)
..++.+|++++..+.+.+ ..|..+-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 666666666666666554 44555555555443
No 363
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.86 E-value=72 Score=31.68 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=66.6
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF 144 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 144 (487)
+.-+.+.+.+++|+.+.+......+. .........+|..+.-.|+++.|-...-.|... +..-|...+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~-----~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER-----FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc-----cchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 44566778888888877765543210 013456777888888889999988888888765 566777777766
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 145 CYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
...++......++ .......++..|..++..+..
T Consensus 434 ~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 6666555443332 111122355667777766665
No 364
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.50 E-value=43 Score=28.84 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHh-cCC-hhhHHHHHHHHHH-cCCCCChhhHHHHHHHHHhCCChHHHH
Q 011362 114 FVDKAKELLLQMKD-KNIKPNVVTYTSVIRGFCY-AKD-WNEAKRLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 114 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
...+|+.+|+.... ..+--|..+...+++.... .+. ...-.++.+-+.. .+..++..+...++..++..+++....
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653211 1233456666666666654 221 1122222222221 123455556666677777777777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHhHHHHHHHH
Q 011362 190 RLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 229 (487)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (487)
++++..... +...|...|..++......|+..-...+..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777665554 4445666777777777777776555554443
No 365
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.08 E-value=75 Score=31.44 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHc--
Q 011362 175 IMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG-CKHTVFSYSILINGYCK-- 251 (487)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 251 (487)
....+.-.|+++.|.+++-.. .+...+...+...+..+.-.+-.+... ..+.... -.+.+..+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 445666788888888887661 122334444433333322211111111 2222111 01112456777777765
Q ss_pred -cCCHhHHHHHHHHHHHC
Q 011362 252 -NKEIEGALSLYSEMLSK 268 (487)
Q Consensus 252 -~~~~~~a~~~~~~~~~~ 268 (487)
..++..|.+.+--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 45677777777665543
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.61 E-value=44 Score=28.56 Aligned_cols=24 Identities=29% Similarity=0.294 Sum_probs=18.0
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHH
Q 011362 243 SILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
..++..+.+.|.+.+|+.+...+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 456778888899988887766544
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.60 E-value=45 Score=28.67 Aligned_cols=72 Identities=10% Similarity=0.000 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 011362 346 AYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEE-----NAVVPNVITFD 418 (487)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 418 (487)
+++.....|..+|.+.+|.++.++.+..+ +.+...+-.++..+...|+--.|.+.++++.+ .|+..+...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 45566778889999999999999998864 56777888889999999998888888887743 36665555443
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.22 E-value=13 Score=35.02 Aligned_cols=110 Identities=13% Similarity=0.024 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011362 346 AYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFI 425 (487)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (487)
++|...-.+...|+...|...+..+......-.-+..-.|.....+.|..-.|-.++.+.+... ...+.++..+.+++.
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYL 687 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHH
Confidence 3344333445578999999888777653211122345566777778888888888888887664 346778888899999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 426 RINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
...+.+.|++.++++.+.. +....+-+.+..
T Consensus 688 ~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHhhhHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 9999999999999998754 333444444443
No 369
>PRK10941 hypothetical protein; Provisional
Probab=76.98 E-value=47 Score=28.54 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
.+.+-.+|.+.++++.|+.+.+.++... +.++.-+..-+-.|.+.|.+..|..=++...+..+ -.|+.......
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P-----~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP-----EDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----CchhHHHHHHH
Confidence 3445567889999999999999999875 55666777788889999999999998888876542 14444444444
Q ss_pred HHHH
Q 011362 106 IDGL 109 (487)
Q Consensus 106 ~~~~ 109 (487)
+..+
T Consensus 258 l~~l 261 (269)
T PRK10941 258 IHSI 261 (269)
T ss_pred HHHH
Confidence 4443
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.45 E-value=43 Score=27.86 Aligned_cols=84 Identities=13% Similarity=-0.009 Sum_probs=43.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDV-FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK 111 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (487)
|.....+..|+..|.+.+.. .|+. .-|..-+..+.+..+++.+..=-.+..+.. +..+.....+..+...
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-------~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-------PNLVKAHYFLGQWLLQ 90 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-------hHHHHHHHHHHHHHHh
Confidence 33444566666666555554 3444 233444555555566665555555555432 2223344445555555
Q ss_pred cCChhHHHHHHHHH
Q 011362 112 EGFVDKAKELLLQM 125 (487)
Q Consensus 112 ~g~~~~a~~~~~~~ 125 (487)
...++.|+..+.+.
T Consensus 91 s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRA 104 (284)
T ss_pred hccccHHHHHHHHH
Confidence 55666666665554
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.38 E-value=46 Score=28.15 Aligned_cols=208 Identities=12% Similarity=0.079 Sum_probs=131.3
Q ss_pred CCCCChhhHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCCHhHHHHHHHHHHHc---CC-
Q 011362 164 GVQPNVVTFNVIMDEL-CKNGKMDEASRLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELFVSMESM---GC- 235 (487)
Q Consensus 164 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 235 (487)
+..||+..-+..-.+- .+..++++|+.-|++.++.....-. .....++....+.+++++..+.+.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456665544333221 2455789999999998876433233 34456788899999999999999987542 11
Q ss_pred -CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC-----CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-
Q 011362 236 -KHTVFSYSILINGYCKNKEIEGALSLYSEMLSK-----GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD- 308 (487)
Q Consensus 236 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 308 (487)
..+..+.+.++.....+.+.+-...+|+.-+.. +-..--.+-..+...|...+.+.+..++++++..+....+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 234556778888777777777777777654431 1111223445677888899999999999988876532221
Q ss_pred ----------HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC-CCCChHhHHHHH----HHHHhcCCHHHHHH-HHHhcc
Q 011362 309 ----------TWTYRTFIDGLCKNGYIVEAVELFHTLRILK-CEFDIRAYNSLI----DGLCKSGRLEIALE-LFRSLP 371 (487)
Q Consensus 309 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~a~~-~~~~~~ 371 (487)
...|..-++.|....+-..-..+++...... --|.+.....+- ....+.|++++|-. +|+.+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 2456667778888888777788888766322 134544443322 22346678877744 444444
No 372
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.58 E-value=31 Score=25.72 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=34.6
Q ss_pred CCChHhHHHHHHHHHhcCC---HHHHHHHHHhccCCCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 341 EFDIRAYNSLIDGLCKSGR---LEIALELFRSLPCGVLVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
.++..+--.+.+++.++.+ ..+.+.+++.+.+.. .|+ ......|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444555555555555443 344555666655421 222 223334455566666666666666666553
No 373
>PF13934 ELYS: Nuclear pore complex assembly
Probab=75.55 E-value=31 Score=28.74 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+..+ ..+.....--..+++++...|+.+.|+.++....-. ..+......++.. ..++...+|..+-
T Consensus 92 ~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 92 GDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred HhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHH
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHH----hcCChhHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLC----KEGFVDKAKEL 121 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~ 121 (487)
+...+ ......+..++..+. +.+..++...+
T Consensus 164 R~~~~---------~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 164 RSYPD---------ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HhCch---------hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 374
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.04 E-value=6.9 Score=19.91 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=17.4
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIK 31 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 31 (487)
|+.+.|..+|++++... +.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45666777777777653 345666655544
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.82 E-value=62 Score=28.83 Aligned_cols=99 Identities=9% Similarity=-0.016 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHcc------------CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHH
Q 011362 55 EPDVFTYTTLVNGLCRT------------SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 122 (487)
|-|+.+|..++..--.. .-.+.-+.+++++.+.+ |.+......++..+.+..+.+...+.+
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-------PDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 56777787776542211 11345567777777765 566777777888887777777778888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHh---cCChhhHHHHHHHHH
Q 011362 123 LQMKDKNIKPNVVTYTSVIRGFCY---AKDWNEAKRLFIEMM 161 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 161 (487)
+.+.... +-+...|...+..... .-.++....+|.+.+
T Consensus 89 e~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 89 EELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8877763 2256666666655433 223445555555443
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.68 E-value=2.4 Score=36.71 Aligned_cols=96 Identities=14% Similarity=0.002 Sum_probs=64.4
Q ss_pred HccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011362 69 CRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK 148 (487)
Q Consensus 69 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 148 (487)
...|.+++|++.|...+..+ ++....|..-.+++.+.+....|++=++.....+.. +..-|-.-..+....|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLG 196 (377)
T ss_pred hcCcchhhhhcccccccccC-------CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhh
Confidence 45677888888888877766 566667777777777888888888777777665321 2223433344445578
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhH
Q 011362 149 DWNEAKRLFIEMMDQGVQPNVVTF 172 (487)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~~~~ 172 (487)
+|++|...+....+.++.+....+
T Consensus 197 ~~e~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred chHHHHHHHHHHHhccccHHHHHH
Confidence 888888888888877665554433
No 377
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.62 E-value=90 Score=30.60 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 296 LFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
.++.++.+-...+......++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.++|+......+...+.
T Consensus 392 ~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 392 RIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333333332233444556666677777777777766665543211 11234444445555666555544444443
No 378
>PRK09687 putative lyase; Provisional
Probab=74.61 E-value=57 Score=28.33 Aligned_cols=217 Identities=10% Similarity=0.032 Sum_probs=88.3
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh----hhHHHHHHHHHHcCCCCChhhH
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW----NEAKRLFIEMMDQGVQPNVVTF 172 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 172 (487)
++.......+.++...|. +.+...+..+.+. ++...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344455555555555554 2333333333332 2444444455555555542 3455555555332 2344444
Q ss_pred HHHHHHHHhCCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 011362 173 NVIMDELCKNGKM-----DEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILIN 247 (487)
Q Consensus 173 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (487)
...+.++...+.. ..+...+..... .++..+-...+.++...++ ..+...+-.+.+ .++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 4444444333211 122222222222 1244444445555555554 234444434333 223333333334
Q ss_pred HHHccC-CHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHh
Q 011362 248 GYCKNK-EIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIV 326 (487)
Q Consensus 248 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (487)
++.+.+ +.+.+...+..+... ++..+-...+.++.+.++. .+...+....+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 443332 122344444443321 2444444445555555542 3333333333321 1 122344444444443
Q ss_pred HHHHHHHHHH
Q 011362 327 EAVELFHTLR 336 (487)
Q Consensus 327 ~a~~~~~~~~ 336 (487)
+|...+..+.
T Consensus 252 ~a~p~L~~l~ 261 (280)
T PRK09687 252 TLLPVLDTLL 261 (280)
T ss_pred hHHHHHHHHH
Confidence 3444444444
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.04 E-value=25 Score=24.04 Aligned_cols=65 Identities=17% Similarity=0.026 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCC
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP-DVFTYTTLVNGLCRTSH 73 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 73 (487)
+.-++..+..+ |.|...-..+...+...|++++|++.+-.+.+..... +...-..++..+.-.|.
T Consensus 8 ~~al~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34455566664 5577888888999999999999999988888764322 23334445544444444
No 380
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.65 E-value=51 Score=27.37 Aligned_cols=24 Identities=4% Similarity=0.026 Sum_probs=14.8
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
...-+..+++.+|+++|+++....
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445567777777777765543
No 381
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.37 E-value=2.1 Score=37.08 Aligned_cols=84 Identities=10% Similarity=-0.047 Sum_probs=53.2
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV-FTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
|.+++|++.|...++.. ++....|..-.+++.+.+.+..|++=+......+ ||. .-|-.-..+....|++++|...
T Consensus 128 G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHHH
Confidence 56677777777777764 4455556666667777777777777777666542 332 2344444445556777777777
Q ss_pred HHHHHhCC
Q 011362 81 FEEMANGN 88 (487)
Q Consensus 81 ~~~~~~~~ 88 (487)
|+...+.+
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 77777655
No 382
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.27 E-value=28 Score=24.24 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhH
Q 011362 38 RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDK 117 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 117 (487)
..++|..+-+.+...+ .....+-..-+..+...|+|++|..+.+... .||...|..|... +.|..++
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----------~pdlepw~ALce~--rlGl~s~ 86 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----------YPDLEPWLALCEW--RLGLGSA 86 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCC----------CchHHHHHHHHHH--hhccHHH
Confidence 4556666666655432 1111112222344566777777776665542 3555555555433 4555555
Q ss_pred HHHHHHHHHhCC
Q 011362 118 AKELLLQMKDKN 129 (487)
Q Consensus 118 a~~~~~~~~~~~ 129 (487)
+...+.++...|
T Consensus 87 l~~rl~rla~sg 98 (115)
T TIGR02508 87 LESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHhCC
Confidence 555555565554
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.97 E-value=34 Score=25.04 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+..+.++.+...++-|++.+....++++.+.+++..|..+|+-+...-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 455566666677788999999999999999999999999999988654
No 384
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.39 E-value=77 Score=28.82 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKN--IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
..+.-+...|...|+++.|++.|.+.+..- .+-.+..|..++....-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455666677777777777777777754431 112344556666666667777666666655544
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.75 E-value=76 Score=29.08 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=41.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHH--HccCChHHHHHHHHHHHhC
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVF--TYTTLVNGL--CRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 87 (487)
+..+...++|..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566889999999999999886 455544 444555544 4667888999999987764
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.18 E-value=31 Score=23.80 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=31.5
Q ss_pred HccCCHHHHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 390 CNDGQMDKARDLFLDMEEN----AVVP----NVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
.+.|++.+|.+.+.+..+. +..+ -......+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777776655555332 2111 012233455566778888888888888774
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.98 E-value=18 Score=21.11 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=20.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 425 IRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
.+.|-..++..++++|.+.|+..++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455555666666666666666666666665543
No 388
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.81 E-value=61 Score=27.05 Aligned_cols=81 Identities=14% Similarity=0.022 Sum_probs=38.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCC
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV-VTYTSVIRGFCYAKD 149 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 149 (487)
...+..|+..|.+....+ |..+.-|..=+.++.+..+++.+..--.+.++. .|+. .....+.........
T Consensus 23 ~k~y~~ai~~y~raI~~n-------P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN-------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hhhhchHHHHHHHHHhcC-------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcc
Confidence 344555555555555433 222234444455555555555555544444443 2222 223334444445555
Q ss_pred hhhHHHHHHHH
Q 011362 150 WNEAKRLFIEM 160 (487)
Q Consensus 150 ~~~a~~~~~~~ 160 (487)
+++|+..+.+.
T Consensus 94 ~~eaI~~Lqra 104 (284)
T KOG4642|consen 94 YDEAIKVLQRA 104 (284)
T ss_pred ccHHHHHHHHH
Confidence 55555555554
No 389
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.67 E-value=33 Score=23.93 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=53.1
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
..++|-.+-+-+...+.....++.. -+..+..+|++++|..+.+.+ ..||...|..+.. .+.|..+.+...+.
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lI-RlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLI-RLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3466766666665543111122222 245577899999999987776 3788888876654 57788888888888
Q ss_pred HHHhCC
Q 011362 83 EMANGN 88 (487)
Q Consensus 83 ~~~~~~ 88 (487)
.+...+
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 887776
No 390
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.47 E-value=38 Score=25.83 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 400 DLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
.+.+.+.+.|+++++.-. .++..+...++.-.|.++++++.+.+...+..|....++.|...|..
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344556677777665543 46667777777788999999999887777777777778889888877
No 391
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.58 E-value=69 Score=27.18 Aligned_cols=271 Identities=11% Similarity=0.091 Sum_probs=156.5
Q ss_pred CCCCCHhhHHHHHHHH-HhcCChhhHHHHHHHHHHcCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHHC---CC-
Q 011362 129 NIKPNVVTYTSVIRGF-CYAKDWNEAKRLFIEMMDQGVQPNVV---TFNVIMDELCKNGKMDEASRLLDLMIQH---GV- 200 (487)
Q Consensus 129 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 200 (487)
+..||+..=+..-.+- .+...+++|+.-|.+..+........ ....++..+.+.+++++....+.+++.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456665433321111 23457899999999998764333333 3345678899999999999999888642 11
Q ss_pred -CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHH----cC-CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC----
Q 011362 201 -RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES----MG-CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGI---- 270 (487)
Q Consensus 201 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 270 (487)
.-+..+.+.++.....+.+.+--..+++.-.+ .. -..--.+-..+...|...+.+.+..++++++..+-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12345667777766666777666666654322 11 111112345678888889999999999988876411
Q ss_pred ccC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHH-----HHhCCCHhHHHH-HHHHHH
Q 011362 271 KPD-------VVIHNTLFVGLFEIHQVERAFKLFDEMQRNG-VAADTWTYRTFIDG-----LCKNGYIVEAVE-LFHTLR 336 (487)
Q Consensus 271 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~a~~-~~~~~~ 336 (487)
..| ..+|..-++.|....+-.+...++++.+.-. .-|.+.... +++- ..+.|++++|.. +|+.+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 111 2456666778888888788888888765421 235554433 3333 356788888764 444444
Q ss_pred ---HcCCCCChHh--HHHHHHHHHhcCC--HHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 337 ---ILKCEFDIRA--YNSLIDGLCKSGR--LEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 337 ---~~~~~~~~~~--~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
+.|.+..+.. |..|...+.++|- ++. +++.-..-.|.+.....++.+|- .++..+-.+++..-.
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNR 330 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhh
Confidence 3342222222 3444444544432 111 11221112456667778888775 446666555554443
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.55 E-value=77 Score=27.66 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=11.8
Q ss_pred CHhHHHHHHHHHHHCCCccChh
Q 011362 254 EIEGALSLYSEMLSKGIKPDVV 275 (487)
Q Consensus 254 ~~~~a~~~~~~~~~~~~~~~~~ 275 (487)
+...|...+......+......
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHH
Confidence 5556666666655554443333
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.33 E-value=17 Score=22.78 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011362 39 IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 39 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 86 (487)
++...++++.+... .-|..-...++.++...|++++|.+++..+.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555554432 23444455677788888888888888777664
No 394
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.10 E-value=91 Score=28.34 Aligned_cols=108 Identities=11% Similarity=0.023 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-------------------CCCccccccchHHHHHH---HHHHHhc
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN-------------------GEFGVVCEPNTVTYTTI---IDGLCKE 112 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l---~~~~~~~ 112 (487)
+-.+.++..+...+..+|+.+.|.++++++.-.- ...+...+.|...|.++ +..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 3455566666666666666666665555542110 00111123344444443 4566677
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCChhhHHHHHHHHHH
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF-CYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 162 (487)
|-+..|.++.+-+...+..-|+.....+|..| .+.++++--+++.+....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 77777777777777664433454445555554 356666666666665443
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.96 E-value=35 Score=27.02 Aligned_cols=20 Identities=5% Similarity=-0.042 Sum_probs=10.0
Q ss_pred HHHccCChHHHHHHHHHHHh
Q 011362 67 GLCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~ 86 (487)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 44455555555555555444
No 396
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.92 E-value=1e+02 Score=28.94 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCcHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHH-hcCCCCCHHH
Q 011362 376 VPNVVTY-SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFI--RINEPSKVIELLHKMK-EINVMPDASI 451 (487)
Q Consensus 376 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~-~~~~~~~~~~ 451 (487)
.|+..++ +.++..+...|-..+|...+..+... .+|+...|..++..-. .+-+..-+..+|+.|. ..| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555554 56777888899999999999999886 4566677776665422 2223677889999987 455 67777
Q ss_pred HHHHHHHHHhcccc
Q 011362 452 VSIVVDLLAKNEIS 465 (487)
Q Consensus 452 ~~~l~~~~~~~g~~ 465 (487)
|......=...|.-
T Consensus 533 w~~y~~~e~~~g~~ 546 (568)
T KOG2396|consen 533 WMDYMKEELPLGRP 546 (568)
T ss_pred HHHHHHhhccCCCc
Confidence 76655443445544
No 397
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.38 E-value=1.3e+02 Score=29.85 Aligned_cols=217 Identities=11% Similarity=0.041 Sum_probs=88.3
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHHHHHHHHh--
Q 011362 245 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGV-AADTWTYRTFIDGLCK-- 321 (487)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 321 (487)
....+.-.|+++.|++.+-+ ......+...+...+ ...|-.......-..+..... .|...-+..++..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL---~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIAL---AYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHH---HHTT------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHH---HHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34455668999999988876 112222333333222 222222111111122222110 1111446667777764
Q ss_pred -CCCHhHHHHHHHHHHHcCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHhccCCC---------------CC-CcHH---
Q 011362 322 -NGYIVEAVELFHTLRILKCEFDIRAY-NSLIDGLCKSGRLEIALELFRSLPCGV---------------LV-PNVV--- 380 (487)
Q Consensus 322 -~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------~~-~~~~--- 380 (487)
..++.+|.+++--+.....+.....+ .++-......++++ .++..+...| +. ++..
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~ 415 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLRE 415 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeeccccccCCCCcHHHHHH
Confidence 56788888888777654322222222 22222222333222 2222221111 11 1222
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCC-----------hhHHHHHHHHHHhcC----
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR-INE-----------PSKVIELLHKMKEIN---- 444 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~-----------~~~a~~~~~~~~~~~---- 444 (487)
.....+.-+...|++++|..+|.-+.+. ..-....+.++.-... ... ...|..+.+.....+
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~ 493 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLYHLAEEY--DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISS 493 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHh
Confidence 2334445567789999999998877542 1112333433333322 222 233444444443321
Q ss_pred -CCC-CHHHHHHHHH-----HHHhcccccccccc
Q 011362 445 -VMP-DASIVSIVVD-----LLAKNEISLNSLPS 471 (487)
Q Consensus 445 -~~~-~~~~~~~l~~-----~~~~~g~~~~~~~~ 471 (487)
+.+ ...++..|++ -+...|++++|++.
T Consensus 494 ~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~ 527 (613)
T PF04097_consen 494 KVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDI 527 (613)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122 2345555554 35668888665554
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.15 E-value=32 Score=27.74 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 410 VVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
..|++.+|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357777777777777777777777777777766
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.37 E-value=27 Score=21.84 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
.-.-.+|.+|...|++++|.+.+..+.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455566666666666666555543
No 400
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.34 E-value=88 Score=27.49 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH--HHHHHHHHhc
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY--TTIIDGLCKE 112 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~ 112 (487)
..--..+|.++|+++++.+ ..+|+. -+.+...|...+ .+.+++ .++.+| ..|..+.-+.
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~d------a~~rRD--------tnvl~YIKRRLAMCARkl 288 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHE------AQLRRD--------TNVLVYIKRRLAMCARKL 288 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchh------hhhhcc--------cchhhHHHHHHHHHHHHh
Confidence 3445678888888887653 222321 111122222222 233332 334443 4455555667
Q ss_pred CChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 113 GFVDKAKELLLQMKDKNIKPNV---VTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
|+..+|.+.|+.+.+. .|-. .....|+.++....-+.+...++.+.-+..
T Consensus 289 GrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 289 GRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred hhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 8888888888777654 1211 234457777777777777777666665543
No 401
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.49 E-value=89 Score=27.25 Aligned_cols=150 Identities=10% Similarity=-0.007 Sum_probs=81.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 70 RTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 70 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
..+++..+...+......+ +......+...|.. ..+...|.++|...-+.|. ......|...|.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~ 120 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYA 120 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHh
Confidence 4566777777777776643 12344444444443 3457778888887766653 334444555554
Q ss_pred h----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011362 146 Y----AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG-------KMDEASRLLDLMIQHGVRPDAFTYNTLLDGF 214 (487)
Q Consensus 146 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (487)
. ..+..+|..+|.++.+.|..+.......+...|..-. +...|...+..+-..+ +......+...|
T Consensus 121 ~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y 197 (292)
T COG0790 121 NGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMY 197 (292)
T ss_pred cCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 4 3377888888888887765533222333333333321 1225666666655554 233333333333
Q ss_pred Hc----CCCHhHHHHHHHHHHHcC
Q 011362 215 CL----TGRVNHAKELFVSMESMG 234 (487)
Q Consensus 215 ~~----~~~~~~a~~~~~~~~~~~ 234 (487)
.. ..+..+|...|....+.|
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCC
Confidence 22 235566666666665554
No 402
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.43 E-value=13 Score=34.04 Aligned_cols=100 Identities=16% Similarity=-0.009 Sum_probs=41.9
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc-HHHHHHHHHHHHccCCHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN-VVTYSIMIGGLCNDGQMD 396 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 396 (487)
.+...+.++.|..++.++++.. +.....|..-..++.+.+++..|..=+..+++.. |+ ...|..=..++.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHH
Confidence 3344455555555555555442 1122222222344455555555555444444431 21 122222223333444444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011362 397 KARDLFLDMEENAVVPNVITFDMLIR 422 (487)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~l~~ 422 (487)
+|...|+.... +.|+..-+...+.
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 55554444443 3344444444333
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.11 E-value=38 Score=28.70 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKD----KN-IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
......+...|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.-++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445566666666666666666666532 22 2233445555666666666666666554443
No 404
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.10 E-value=46 Score=25.37 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=44.5
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011362 10 VLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH 73 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 73 (487)
+.+.+.+.|.+.+.. -..++..+.+.++.-.|.++++++.+.++..+..|....+..+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344455566554444 456788888888889999999999988767777766666666666654
No 405
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.69 E-value=27 Score=21.01 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF 59 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 59 (487)
..+..++.+.|++++|.+..+.+++. .|+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 34566778888888888888888876 55544
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.43 E-value=1.1e+02 Score=27.91 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCccccccch
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFG--CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN---GEFGVVCEPNT 99 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 99 (487)
.+.-+...|...|+++.|++.|.+....= .+.....+..++..-.-.|++........+..+.. ......+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 35556666667777777777776644321 01112234445555555555544444433333221 00001135556
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELL 122 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~ 122 (487)
..+..+.....+ .....|...+
T Consensus 232 ~C~agLa~L~lk-kyk~aa~~fL 253 (466)
T KOG0686|consen 232 KCAAGLANLLLK-KYKSAAKYFL 253 (466)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH
Confidence 666666555544 3333333333
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.00 E-value=47 Score=23.55 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=41.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF 114 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (487)
-....++|..+.+.+...+. -...+-..-+..+.++|+|++| +..-... ..||...|..|.. .+.|-
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-------~~pdL~p~~AL~a--~klGL 84 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-------CYPDLEPWAALCA--WKLGL 84 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---------GGGHHHHHHHH--HHCT-
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-------CCccHHHHHHHHH--Hhhcc
Confidence 34466777777777766542 2222222334456677777777 2211111 2456666555543 36677
Q ss_pred hhHHHHHHHHHHhCC
Q 011362 115 VDKAKELLLQMKDKN 129 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~ 129 (487)
.+++...+.++...|
T Consensus 85 ~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 85 ASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHhCC
Confidence 777777777666554
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.82 E-value=18 Score=31.23 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=14.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 011362 383 SIMIGGLCNDGQMDKARDLFLDMEENAVV 411 (487)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 411 (487)
+..|....+.||+++|+.+++++.+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34444445555555555555555554444
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.64 E-value=91 Score=26.73 Aligned_cols=26 Identities=27% Similarity=0.179 Sum_probs=16.6
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 343 DIRAYNSLIDGLCKSGRLEIALELFR 368 (487)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (487)
++.....+...|.+.|++.+|...|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 55666677777777777777776553
No 410
>PRK12798 chemotaxis protein; Reviewed
Probab=64.29 E-value=1.2e+02 Score=27.89 Aligned_cols=212 Identities=8% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCChHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRVF--GCEPDVFTYTTLVNGLCRTSHTIVA 77 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 77 (487)
.|+-++|.+.+..+.....++....|..|+.+....+ +..+|+++|+...-. |.-........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLF 157 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 157 (487)
..+-.....+.... +--...+..+...+.+.++-..-..+.+.+-.....--...|..+.+.-.-.|+.+-|.-.-
T Consensus 205 ~~la~~Y~rRF~~S----~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 205 EALARNYLRRFRHS----PYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHhccC----chHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Q ss_pred HHHHHcCCCCChhhHHHHHH---HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 158 IEMMDQGVQPNVVTFNVIMD---ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
++........+...-...+. +-.-..+++++.+.+..+-.....+.......-......
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~AA~~va~ 342 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLEAARSVAR 342 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHHHHHHHHH
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.18 E-value=1.5e+02 Score=28.59 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=91.4
Q ss_pred hcCCHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHccCChHHHHHHHHHH-------HhCCC-------
Q 011362 35 AESRIMEAAALFTKLRVFG-----------CEPDVFTYTTLVNGLCRTSHTIVALNLFEEM-------ANGNG------- 89 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~------- 89 (487)
....+++|...|.-..... .+-.+.+...+..++..+|+.+.|-.++++. ....-
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 4455667777776665542 1223445666777788888877666655543 32210
Q ss_pred CCccccccchHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCChhhHHHHHHHHHHcC-
Q 011362 90 EFGVVCEPNTVTYTTI---IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF-CYAKDWNEAKRLFIEMMDQG- 164 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~- 164 (487)
..+...+.|...|.++ +..+.+.|-+..|+++...+.+....-|+.....+|..| .+..++.--+++++.....+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 0111123344444443 456677888888888888887765444666666677766 46667777777777664432
Q ss_pred --CCCChhhHHHHHHHHHhCCC---hHHHHHHHHHHHH
Q 011362 165 --VQPNVVTFNVIMDELCKNGK---MDEASRLLDLMIQ 197 (487)
Q Consensus 165 --~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 197 (487)
.-|+-.--..++..|..... -..|...+.++..
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 23443333344445554443 3344445544444
No 412
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.08 E-value=1.9e+02 Score=29.87 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=17.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 86 (487)
|..|+..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55666667777777777777776665
No 413
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.80 E-value=1.4e+02 Score=28.26 Aligned_cols=165 Identities=9% Similarity=0.105 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
.|.....+++..+.......-...+..+|...|- +-..|..++++|..+ .-++-..+++++.+..+. |.+.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 3444445555555555555555555555555432 445555566666555 445555566655554332 222222233
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHcCCCHhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHH
Q 011362 177 DELCKNGKMDEASRLLDLMIQHGVRP--D---AFTYNTLLDGFCLTGRVNHAKELFVSMESM-GCKHTVFSYSILINGYC 250 (487)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 250 (487)
..| ..++.+.+..+|.++...-++. + ...|..+... -..+.+....+..++... |...-...+..+-.-|.
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 333 3355555555555554432210 1 1123333221 123444444444444332 22222233333444455
Q ss_pred ccCCHhHHHHHHHHHHHC
Q 011362 251 KNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~ 268 (487)
...++.+|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 555566666665555554
No 414
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.71 E-value=22 Score=32.75 Aligned_cols=104 Identities=15% Similarity=0.038 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFT-YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
+......+.++.|+.++.++++. .|+-.. |..-..++.+.+++..|+.=+.++.+.. |.....|..=..+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-------P~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-------PTYIKAYVRRGTA 81 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-------chhhheeeeccHH
Confidence 34455666777777777777765 344333 3333356667777777776666666654 3334445444555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF 144 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 144 (487)
+...+.+.+|+..|+..... .|+..-....+.-|
T Consensus 82 ~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 55566666666666666543 45555555444443
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.43 E-value=49 Score=22.82 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=36.0
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 33 LCAESRIMEAAALFTKLRVF----GCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
..+.|++.+|.+.+.+.... +.... ......+.......|++++|.+.+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35788999997666665433 21221 122334556677889999999999887764
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.10 E-value=77 Score=25.21 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=11.0
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011362 32 GLCAESRIMEAAALFTKLR 50 (487)
Q Consensus 32 ~~~~~g~~~~A~~~~~~~~ 50 (487)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 4555566666666655554
No 417
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=1.1e+02 Score=26.47 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=69.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVF-------TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+.+...+.+++++|+..+.+++..|+..+.. +...+...|.+.|++..-.+........-..+. -+..+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft--k~k~~Ki 86 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT--KPKITKI 86 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc--chhHHHH
Confidence 5566778899999999999999888766544 345677788888887665544433221110000 1233444
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 102 YTTIIDGLCKE-GFVDKAKELLLQMKDKNIKPNV-----VTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 102 ~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
...|+..+... ..++.-+.+.....+...+-+. ..=..++..+.+.|.+.+|+.+...
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44555444332 2344444444443332111111 1112355566666777666655443
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.68 E-value=30 Score=20.21 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=20.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666666666666666666665555543
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.60 E-value=50 Score=22.64 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=40.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh
Q 011362 46 FTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV 115 (487)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (487)
++.....+ +.|......+...+...|+++.|++.+-.+.+..+.+ .+...-..++..+...|.-
T Consensus 11 l~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-----~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 11 LEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-----EDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-----CCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----cccHHHHHHHHHHHHcCCC
Confidence 33334443 5677788889999999999999999999998876421 2344455555555555543
No 420
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.39 E-value=88 Score=30.40 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV------FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
.|+. .....+..++..++++|..-...- +.|. .....+..+|....+.+.|.++++++.+.+ +.+
T Consensus 357 LWn~-A~~~F~~~~Y~~s~~~y~~Sl~~i-~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------~~~ 427 (872)
T KOG4814|consen 357 LWNT-AKKLFKMEKYVVSIRFYKLSLKDI-ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------RQS 427 (872)
T ss_pred HHHh-hHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------ccc
Confidence 3444 334567788888999888765542 2222 235566677888899999999999999865 455
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
+.+-..+..+....|..++|+........
T Consensus 428 ~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 428 PLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 56666667777888899999988877654
No 421
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.30 E-value=93 Score=25.70 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHHHHHccCCH-------HHHHHHHHHHHhCCCCC----CH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 381 TYSIMIGGLCNDGQM-------DKARDLFLDMEENAVVP----NV-ITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~----~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
.+-.+.+.|...|+. ..|...|.+.......| +. ...-.+.....+.|+.++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334444555555553 33445555554332111 12 223344455667788888888888877654
No 422
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.33 E-value=66 Score=31.14 Aligned_cols=83 Identities=10% Similarity=0.083 Sum_probs=62.8
Q ss_pred ccchHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 011362 3 RVSHGFVVLGRILKSCFTPD------AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 76 (487)
+|..+++.|...+..- +.| ...+..+.-+|....+.+.|.++++++.+.. +.++.+-..+..+....|..++
T Consensus 369 ~Y~~s~~~y~~Sl~~i-~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 369 KYVVSIRFYKLSLKDI-ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcchHH
Confidence 5677888888877653 323 3346677778899999999999999998764 3455555667778888999999
Q ss_pred HHHHHHHHHhC
Q 011362 77 ALNLFEEMANG 87 (487)
Q Consensus 77 a~~~~~~~~~~ 87 (487)
|+.....+...
T Consensus 447 AL~~~~~~~s~ 457 (872)
T KOG4814|consen 447 ALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhh
Confidence 99988877654
No 423
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.33 E-value=1.2e+02 Score=26.55 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=40.5
Q ss_pred HHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011362 364 LELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFI 425 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (487)
.++|+.+...++.|.-.++..+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 35667777777788888887777777777788888888888875 3333666666555
No 424
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.32 E-value=25 Score=30.40 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 415 ITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
..|+..|....+.||+++|+++++++.+.|+.--..+|..
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3456777777777777777777777777776655555543
No 425
>PRK10941 hypothetical protein; Provisional
Probab=60.02 E-value=1.1e+02 Score=26.30 Aligned_cols=78 Identities=9% Similarity=0.017 Sum_probs=49.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHh
Q 011362 383 SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI-NVMPDASIVSIVVDLLAK 461 (487)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 461 (487)
+.+-.+|.+.++++.|+++.+.+..... .++.-+.--.-.|.+.|.+..|..-++..++. .-.|+.......+..+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 4455567778888888888888877432 23444555555677888888888877777643 234445555555555543
No 426
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.62 E-value=1e+02 Score=25.53 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=47.5
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCCCHH--HHHHHHHHHHccCCh-------HHHHHHHHHHHhCCCCCccccccch
Q 011362 33 LCAESRIMEAAALFTKLRVF----GCEPDVF--TYTTLVNGLCRTSHT-------IVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~--~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.....+++|++.|.-++-. +.++... .+..+.-.|...|+. ..|.+.|.+....... +...-...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~-~~~~~~~~ 165 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF-PIEGMDEA 165 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC-CCCCchHH
Confidence 34455677777766655432 2233322 233444455555663 3455555555544311 00001112
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
...-.++....+.|+.++|.+.|.++...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33334555566677777777777777665
No 427
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.61 E-value=30 Score=27.94 Aligned_cols=52 Identities=12% Similarity=-0.048 Sum_probs=39.4
Q ss_pred hcCCHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 35 AESRIMEA---AALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 35 ~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..++.+.. ++..++..+. .|++..+..++.++...|+.++|.++.+++..-.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444433 3444444443 7999999999999999999999999999998754
No 428
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=59.43 E-value=1.5e+02 Score=31.62 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=79.2
Q ss_pred HHHHHhcCCHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCccccccchHHH
Q 011362 30 IKGLCAESRIMEAAA------LFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTY 102 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 102 (487)
.+.....|.+.+|.+ +++..-..-.++....|..+...+-+.|+.++|+..-.+..-... -.|...+.+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 444556677777776 555322221245566788888999999999999887655432221 1222234455666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDK-------NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
..+.......++...|...+.+.... ..||...++..+-..+...+.++.|.+.++.+..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666666666777777666655432 1334444555555555555777777777777654
No 429
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.17 E-value=1.4e+02 Score=27.13 Aligned_cols=126 Identities=13% Similarity=0.067 Sum_probs=62.1
Q ss_pred ccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH-
Q 011362 96 EPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNV- 174 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 174 (487)
|-.+.++..+..++.++|+.+.|.+++++.+-. =..++......+........+. ......-|...|..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~~r------L~~~~~eNR~fflal 106 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGNCR------LDYRRPENRQFFLAL 106 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCccc------cCCccccchHHHHHH
Confidence 556777777777777888877777777765421 0001111110000000000000 00000112233332
Q ss_pred --HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-cCCCHhHHHHHHHHHH
Q 011362 175 --IMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC-LTGRVNHAKELFVSME 231 (487)
Q Consensus 175 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 231 (487)
.+..+.+.|.+..|+++.+.+...+..-|+.....+|..|+ +.++++--+++.+...
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 23456667777777777777776655545655555565554 5555655555555543
No 430
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.92 E-value=54 Score=22.24 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHH
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAK 119 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 119 (487)
.+.+++..+.+.|+ .+......+-.+--..|+.+.|.+++..+. ++ +..|..++.++-..|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhhh
Confidence 35566777776663 333333333333335678888888888877 44 356777777777777655443
No 431
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.30 E-value=77 Score=23.77 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 20 TPDAVTFTSLIKGLCAESR---IMEAAALFTKLRVFGCEPD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
.++..+-..+..++.+..+ .++.+.+++.+.+.. +|+ ......|.-++.+.++++.++++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 4566666667888877664 566788999988632 332 3345567778899999999999999998865
No 432
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.64 E-value=1.6e+02 Score=27.31 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHHHHhCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChHHHHHHHH
Q 011362 10 VLGRILKSCFTPDAVT--FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF--TYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
+++.+++.|..++... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.+....+++
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 3444555554444321 2233444445555542 22333333333221 01122334445566555444443
No 433
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=57.56 E-value=35 Score=21.37 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=32.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HccCChHHHHHHH
Q 011362 32 GLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGL-----CRTSHTIVALNLF 81 (487)
Q Consensus 32 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~ 81 (487)
.+...|++=+|-++++.+-.....+....+..+|.+. .+.|+...|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4567888888999888886543234444555665543 4678888777654
No 434
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=57.49 E-value=27 Score=18.34 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Q 011362 395 MDKARDLFLDMEENAVVPNVITFD 418 (487)
Q Consensus 395 ~~~A~~~~~~~~~~~~~~~~~~~~ 418 (487)
++.|..+|++.+. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3445555555544 234444443
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.47 E-value=2.4e+02 Score=29.21 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCh--HHHHHHHHHHHhCCCCCccccccc-
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHT--IVALNLFEEMANGNGEFGVVCEPN- 98 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~- 98 (487)
-|..|+..|...|+.++|+++|.++....-..| ...+..++..+-..+.. +...++-....+.++..|..+-.+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 378899999999999999999999876320011 12233455555555555 667777777777665444332222
Q ss_pred -h---HHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011362 99 -T---VTY-TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY 146 (487)
Q Consensus 99 -~---~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 146 (487)
. ... ..-+-.|......+-+...++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1 000 11233345566777788888888766545566666777776654
No 436
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.52 E-value=15 Score=27.19 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011362 392 DGQMDKARDLFLDMEENAVVPNVITFDMLIR 422 (487)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 422 (487)
.|.-..|-.+|++|++.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34555666666666666655553 444443
No 437
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.50 E-value=15 Score=27.24 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG 67 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 67 (487)
..|.-.+|..+|.+|+..|.+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 445566788888888888877765 5555543
No 438
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.43 E-value=1.3e+02 Score=25.31 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHh
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC-RTSHTIVALNLFEEMAN 86 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 86 (487)
-++..+-+.|+++++.+.++++...+...+..-.+.+..+|- ..|..-.+.+.+..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 356777888999999999999888876667666666666553 22444455555555444
No 439
>PRK09462 fur ferric uptake regulator; Provisional
Probab=53.67 E-value=99 Score=23.64 Aligned_cols=60 Identities=8% Similarity=0.125 Sum_probs=34.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 405 MEENAVVPNVITFDMLIRGFIRI-NEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.+.|++++..-. .++..+... +..-.|.++++++.+.+...+..|...-++.|...|..
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444555554332 233334333 34556777777777666555666666666777776666
No 440
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.43 E-value=56 Score=20.74 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR 70 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (487)
|....++.++...++..-.++++..+.++...| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455668888999999899999999999999988 5677777777766654
No 441
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.19 E-value=1.9e+02 Score=26.90 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=12.5
Q ss_pred CChhhHHHHHHHHHHcCCCCChh
Q 011362 148 KDWNEAKRLFIEMMDQGVQPNVV 170 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~~ 170 (487)
.+.+.|+.++..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45555566666665555544433
No 442
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.09 E-value=2e+02 Score=26.89 Aligned_cols=140 Identities=11% Similarity=0.029 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhC---CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHH
Q 011362 115 VDKAKELLLQMKDK---NI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 115 ~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (487)
.++...++...... ++ ..+......++..+ .|+...++.+++.+...+...+ .+....
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~ 214 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHH
Confidence 34555555554322 33 44555555555543 6788888777777654311111 111222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH---cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC--C---HhHHHHHH
Q 011362 191 LLDLMIQHGVRPDAFTYNTLLDGFC---LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNK--E---IEGALSLY 262 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~---~~~a~~~~ 262 (487)
++...... .......+..++.++. +..+.+.|+.++..|.+.|..|....-..++.++-.-| + ..-|...+
T Consensus 215 ~~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 215 ALQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred HHhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 22211111 1111112223333333 34677777777777777776555444444444443333 2 23344445
Q ss_pred HHHHHCCCccC
Q 011362 263 SEMLSKGIKPD 273 (487)
Q Consensus 263 ~~~~~~~~~~~ 273 (487)
+....-|.+..
T Consensus 294 ~~~~~~g~pe~ 304 (413)
T PRK13342 294 DAVERIGMPEG 304 (413)
T ss_pred HHHHHhCCcHH
Confidence 55555555433
No 443
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.87 E-value=1.4e+02 Score=29.26 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=31.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
.-...|+.++...-+..|-......+..+|..++..+.+...+
T Consensus 546 ~asengd~d~vy~~in~lg~t~W~iN~rvf~V~~~~Wn~ge~f 588 (1117)
T COG5108 546 MASENGDMDKVYHSINALGNTAWSINHRVFEVMASLWNNGETF 588 (1117)
T ss_pred HhhhcCChHHHHHHHHHhccCchhhhHHHHHHHHHHHhCCCce
Confidence 3456788888877777777766777888888887776665554
No 444
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=52.42 E-value=1.1e+02 Score=24.01 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=32.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 406 EENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
.+.|++++..-. .++..+...++.-.|.++++++.+.+..++..|....++.|...|..
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555444332 23333334444555666666666666555665555556666666666
No 445
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.31 E-value=1.7e+02 Score=31.32 Aligned_cols=152 Identities=18% Similarity=0.062 Sum_probs=93.7
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 7 GFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRV-------FGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 7 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
++.++.+....-.+.....|..+...+-+.|+.++|+.+-.+..- ...+-+...|..+........+...|..
T Consensus 957 slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~ 1036 (1236)
T KOG1839|consen 957 SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALK 1036 (1236)
T ss_pred hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhh
Confidence 344777544444456678899999999999999999887655421 1212233345556555566667777777
Q ss_pred HHHHHHhCCC-CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----C---CCCHhhHHHHHHHHHhcCChh
Q 011362 80 LFEEMANGNG-EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN----I---KPNVVTYTSVIRGFCYAKDWN 151 (487)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~ 151 (487)
.+.+....-. .+|...|+...++..+-..+...++++.|.+..+.+.... . -.+...+..+.+.+...+++.
T Consensus 1037 ~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1037 SLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred hHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence 7766554321 1111135566666666666666688888988888876531 1 124455666666666666666
Q ss_pred hHHHHHH
Q 011362 152 EAKRLFI 158 (487)
Q Consensus 152 ~a~~~~~ 158 (487)
.|....+
T Consensus 1117 ~al~~ek 1123 (1236)
T KOG1839|consen 1117 NALEHEK 1123 (1236)
T ss_pred HHHHHHh
Confidence 6555443
No 446
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.26 E-value=42 Score=30.72 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHcC-------CCCChHhHHHHHHHHHhcCCHHHHHHHHHhc
Q 011362 313 RTFIDGLCKNGYIVEAVELFHTLRILK-------CEFDIRAYNSLIDGLCKSGRLEIALELFRSL 370 (487)
Q Consensus 313 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (487)
..+++..+-.|++..|+++++.+.-.. ..-.+.++-.+.-+|...+++.+|.+.|..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666655542110 0112233444445555555555555555443
No 447
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.82 E-value=1.7e+02 Score=25.95 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=33.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---CCCCcHHHH--HHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 351 IDGLCKSGRLEIALELFRSLPCG---VLVPNVVTY--SIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
+....+.++.++|.++++++.+. .-.|+...| ....+++...|+.+++.+.+.+..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444556777777777766532 124455444 3344556667777777777766655
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.57 E-value=1.1e+02 Score=26.08 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCCChhhHHHHHHHHHhCCChHHHHH
Q 011362 116 DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ----G-VQPNVVTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (487)
..|.+.|...... .........+...|...|++++|.++|+.+... | ..+...+...+..++...|+.+..+.
T Consensus 162 ~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 162 EKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455555544442 112334446888899999999999999988532 2 23455566778889999999998887
Q ss_pred HHHHHH
Q 011362 191 LLDLMI 196 (487)
Q Consensus 191 ~~~~~~ 196 (487)
+--++.
T Consensus 240 ~~leLl 245 (247)
T PF11817_consen 240 TSLELL 245 (247)
T ss_pred HHHHHh
Confidence 765543
No 449
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.63 E-value=39 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=14.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555555555555555555544
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.52 E-value=1.6e+02 Score=25.23 Aligned_cols=91 Identities=14% Similarity=-0.002 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHHccCChH-HHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLR----VFGCEPDVFTYTTLVNGLCRTSHTI-VALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
..+.+.|+...|.++-.-++ +.+.+.+......++..+...+.-+ +-.++.+.+.+.. ..+....-++..+..+
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~ 96 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLL 96 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHH
Confidence 34455666655544433332 2355556555555555554433211 1112222211111 0000012356677777
Q ss_pred HHHHHhcCChhHHHHHH
Q 011362 106 IDGLCKEGFVDKAKELL 122 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~ 122 (487)
...|.+.|++..|...|
T Consensus 97 a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 97 AEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHhhccHHHHHHHH
Confidence 77777777777776655
No 451
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.51 E-value=90 Score=22.24 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=49.4
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
..+||-.+.+-+...+....+++. .-+..+..+|++++|+ ..-. ....||...|..|. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~l-Ir~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVAL-IRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHH-HHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHH-HHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 467888888888887532222222 2345678999999992 2222 22367877776554 358899999999999
Q ss_pred HHHhCC
Q 011362 83 EMANGN 88 (487)
Q Consensus 83 ~~~~~~ 88 (487)
++...+
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 887766
No 452
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.09 E-value=1e+02 Score=27.47 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG 67 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 67 (487)
.|..+++.....|.++..+.+|+++...|..|-...-..++..
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4555555555555555555555555555555544444444433
No 453
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.66 E-value=2.1e+02 Score=26.29 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCccChh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 011362 247 NGYCKNKEIEGALSLYSEMLSKGIKPDVV--IHNTLFVGLF--EIHQVERAFKLFDEMQRN 303 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 303 (487)
....+.+++..|.+++..+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677888888888887775 444333 3334444443 355667777777766654
No 454
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=48.18 E-value=90 Score=22.79 Aligned_cols=84 Identities=14% Similarity=0.071 Sum_probs=48.3
Q ss_pred CccchHHHHHHHHHhC--CCCC---------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----cC-C-CCCHHHHHH-
Q 011362 2 GRVSHGFVVLGRILKS--CFTP---------DAVTFTSLIKGLCAESRIMEAAALFTKLRV----FG-C-EPDVFTYTT- 63 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~--~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~-~~~~~~~~~- 63 (487)
|-+++|..-+..+... .+|+ |..++..|..++...|++++++..-+..+. +| . +..-..|..
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 4456666666554332 2333 355677788899999999987766555442 22 1 222233433
Q ss_pred ---HHHHHHccCChHHHHHHHHHHH
Q 011362 64 ---LVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 64 ---l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
-..++-..|+.++|+..|+...
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Confidence 2345667899999999988643
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.63 E-value=1.1e+02 Score=22.57 Aligned_cols=77 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 011362 360 LEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN-VITFDMLIRGFIRINEPSKVIELLH 438 (487)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (487)
++.+...|...... ..|......-+..--... .+..+|+.|..+|+--. ...|......+...|++++|.++++
T Consensus 49 Ler~~~~f~~~~~Y--~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 49 LERCIRKFKDDERY--KNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHTTSGGG--TT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhhHhh--cCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHH
Q 011362 439 KMK 441 (487)
Q Consensus 439 ~~~ 441 (487)
..+
T Consensus 124 ~Gi 126 (126)
T PF08311_consen 124 LGI 126 (126)
T ss_dssp HHH
T ss_pred hhC
No 456
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=46.79 E-value=3e+02 Score=29.09 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=58.2
Q ss_pred CHhhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011362 133 NVVTYTSVIRGFCYAK--DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTL 210 (487)
Q Consensus 133 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 210 (487)
....+..++.+|++.+ ++++|+....++.+. +.......+.-.+- +-.+.++|+.++.. . |. =..+
T Consensus 811 ~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~-Y--Dl--~Lal 878 (928)
T PF04762_consen 811 KDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNKLYDVALGT-Y--DL--ELAL 878 (928)
T ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHHHHHHHhhh-c--CH--HHHH
Confidence 3445566788888887 788888888888765 22222222221111 12223333333221 0 11 0123
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHH
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSE 264 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (487)
+-+--.+.|+.+=+-+++++.+. ++... ...|+. ..+++++|++.+.+
T Consensus 879 ~VAq~SQkDPKEYLPfL~~L~~l--~~~~r--ry~ID~--hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 879 MVAQQSQKDPKEYLPFLQELQKL--PPLYR--RYKIDD--HLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHhccChHHHHHHHHHHHhC--Chhhe--eeeHhh--hhCCHHHHHHHHHh
Confidence 34444556777777777777654 23221 112222 35788888877654
No 457
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=46.68 E-value=64 Score=23.25 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 428 NEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 428 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+..-.|.++++++.+.+...+..|....++.|...|..
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 33444555555555444444444444445555555544
No 458
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.41 E-value=4e+02 Score=28.54 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=46.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----------------------CCCCC-----HHHHHHHHHHHHccCChHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVF-----------------------GCEPD-----VFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+..+|...|...+|+..|.++..- |-.|. ..-|..+++.+-+.+..+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344577788888888888776432 11111 11234555555566666666555
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 122 (487)
-..+.+.-++- .|.-..+++.+.......|.+-+|.+.+
T Consensus 1006 A~~AIe~l~dd---~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 1006 AVKAIENLPDD---NPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHhCCCc---chhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 55544432110 1222334455555555555555554443
No 459
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=46.30 E-value=3.4e+02 Score=27.73 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=10.2
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 011362 178 ELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~ 196 (487)
.+.-.|.++.|+..+....
T Consensus 477 ~LlLsgqfe~AI~fL~~~~ 495 (835)
T KOG2168|consen 477 VLLLSGQFERAIEFLHREE 495 (835)
T ss_pred HHHHHHhHHHHHHHHHhhc
Confidence 3344556666666655543
No 460
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.96 E-value=1.5e+02 Score=24.09 Aligned_cols=62 Identities=18% Similarity=0.059 Sum_probs=41.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
....+.+++.+..+|+++.|-+.|.-+++.. +.|.. .|..-+..+.+.+......+.++.+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 4467788999999999999999999998764 45544 34444555555555444444444443
No 461
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.74 E-value=63 Score=23.54 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 419 MLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.|.+.|..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45566666666788999999999888788888887888899998877
No 462
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.59 E-value=2.7e+02 Score=26.33 Aligned_cols=411 Identities=11% Similarity=0.008 Sum_probs=215.4
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH-HHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 29 LIKGLCAES--RIMEAAALFTKLRVFGCEPD--VFTYTTLVNG-LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 29 l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
+...+...| +...+++.++......++.- ..+...++.. +....+++.|...+++.-......+.-....-.++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 455556666 67777777777665532222 2233344443 345677888888877654332111000122235667
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHhC--CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH--
Q 011362 104 TIIDGLCKEG-FVDKAKELLLQMKDK--NIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD-- 177 (487)
Q Consensus 104 ~l~~~~~~~g-~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-- 177 (487)
.|...+.... .+..+..++.+..+. +.+ .+-.....|+..+.-..|+..|.+++.---+. -.+-...|..++.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHH
Confidence 7788887766 788888888887664 221 11222335677778888999999885432221 1122222322222
Q ss_pred ----HHHhCCChHHHHHHH---HHHHHCCCCCCHHH------HH--HHHHHHHcCCCHhHHHHHHHHHHHc---CCC---
Q 011362 178 ----ELCKNGKMDEASRLL---DLMIQHGVRPDAFT------YN--TLLDGFCLTGRVNHAKELFVSMESM---GCK--- 236 (487)
Q Consensus 178 ----~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~------~~--~l~~~~~~~~~~~~a~~~~~~~~~~---~~~--- 236 (487)
......+..++.+++ ..+.+. ..+|..- |. .-+..|...|+...+...++++... +.+
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~ 250 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSR 250 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCC
Confidence 122233444444444 444443 4444321 11 1223455678877777777766432 111
Q ss_pred ---------CCHhhHHHHH-------------HHHHccCCHhHHHHHHHHHHHC----CCcc-ChhhHH--------HHH
Q 011362 237 ---------HTVFSYSILI-------------NGYCKNKEIEGALSLYSEMLSK----GIKP-DVVIHN--------TLF 281 (487)
Q Consensus 237 ---------~~~~~~~~l~-------------~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~--------~l~ 281 (487)
|++..+.-+. ..-...|-+++|.+.-++++.. ...+ ....++ .++
T Consensus 251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv 330 (629)
T KOG2300|consen 251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIV 330 (629)
T ss_pred CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 1221111111 1111234456666555554421 1111 222222 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCcH--------HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhH--HHH
Q 011362 282 VGLFEIHQVERAFKLFDEMQRNG-VAADT--------WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAY--NSL 350 (487)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 350 (487)
.+-.-.|++.+|++-+..|.+-. -.|.+ ..-..+...+...+.++.|+..|....+.....|...+ ..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 22235789999999888886531 12321 12223334456778899999988887765444454443 345
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCC-cHH-----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 011362 351 IDGLCKSGRLEIALELFRSLPCGVLVP-NVV-----TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN-----VITFDM 419 (487)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 419 (487)
...|.+.|+-+.-.++++.+-..+..+ +.. .+....-.....+++.||..++.+-.+..-.-| .-.+..
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 667888888887777777665322111 110 111111123468999999999988765321111 223344
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 011362 420 LIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
|...+...|+..++.....-..
T Consensus 491 Ls~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHHhcchHHHHhccchHH
Confidence 4556677888888877666544
No 463
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.55 E-value=2e+02 Score=25.64 Aligned_cols=97 Identities=15% Similarity=0.055 Sum_probs=63.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC-EP--DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
...|.-=..-|.+..++..|...|.+.++... .| +...|+.-..+-...|++..|+.=.....+.. |...
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-------P~h~ 153 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-------PTHL 153 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-------cchh
Confidence 33455556677788888888888888776542 12 33456555555566777878877777777765 4455
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMK 126 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 126 (487)
..|-.-..++....++..|..+.++..
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 566555666666667777766666553
No 464
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.39 E-value=1.8e+02 Score=28.61 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChh------hHHHHHHHHHHcCCCCChhhHHHH
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK--NIKPNVVTYTSVIRGFCYAKDWN------EAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
.|..+|...|++-.+.++++.+... |-+.-...++..++.+.+.|.++ .|...+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999998764 33334567888888888998764 4444554443 33466666666
Q ss_pred HHHH
Q 011362 176 MDEL 179 (487)
Q Consensus 176 ~~~~ 179 (487)
+.+.
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 465
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.57 E-value=1.4e+02 Score=22.80 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=19.5
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 149 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 455666666666665554455554444455544443
No 466
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.35 E-value=2e+02 Score=24.38 Aligned_cols=110 Identities=15% Similarity=-0.049 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHH------------------HHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhc
Q 011362 309 TWTYRTFIDGLCKNGYIVEAVELFHTL------------------RILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSL 370 (487)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (487)
..++..-..-+.+.|++.+|...|+++ .+.. ......+..+.+++...|++-++++.-.++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLd-k~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELD-KMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH-HhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Q ss_pred cCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011362 371 PCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDML 420 (487)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (487)
+... +.|...|..-..+.+..-+.++|..=|...++.....-...-..|
T Consensus 257 L~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 257 LRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
No 467
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=44.21 E-value=56 Score=21.43 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=17.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccc
Q 011362 427 INEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI 464 (487)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (487)
.|+.+.+.+++++..+.|++|...+...+..++.+.|.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444444444444443
No 468
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.06 E-value=2.4e+02 Score=25.29 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 396 DKARDLFLDMEENAVVPN----VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (487)
+++..++..+++. -|+ ...|..+++.....|.++.++.+|++++..|-.|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4666667766664 244 24566777777778888888888888888888887777777777766
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.85 E-value=2.2e+02 Score=24.91 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
++....+.++.....+.+..+. ....-...++.....|++..|++++.+..+ -...+..+--.-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred hHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHcCCCHhHHHHHHHH
Q 011362 185 MDEASRLLDLMIQHG-----VRPDAFTYNTLLDGFCLTGRVNHAKELFVS 229 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (487)
+.+.....+.+.+.. ...|+..|..+..+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 470
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.83 E-value=98 Score=27.03 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=59.8
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 19 FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTT-LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
++.|+..|...+....+.|.+.+...+|.++.+.+ |.++..|.. -..-+.-.++++.+..+|....+.+ +.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-------~~ 174 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-------SR 174 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-------CC
Confidence 35688899988888888899999999999998875 566666643 3334556789999999999998877 44
Q ss_pred chHHHHHH
Q 011362 98 NTVTYTTI 105 (487)
Q Consensus 98 ~~~~~~~l 105 (487)
++..|-..
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 55555443
No 471
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.54 E-value=1.7e+02 Score=23.09 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=32.5
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCCh
Q 011362 126 KDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 185 (487)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (487)
...|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44455544332 234444444555667777777777666655655555555555555543
No 472
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.84 E-value=4.1e+02 Score=27.36 Aligned_cols=303 Identities=12% Similarity=0.056 Sum_probs=140.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN--TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV 140 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 140 (487)
.+-..|...|+++.|+++-+.- |+ ..++..-+..|.+.+++..|-++|.++.+ .|..+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~------------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEV 422 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR------------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEV 422 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHH
Confidence 3556778888888888765432 22 23444455667778888888888877633 23333
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH-----HHHHH-HhCCCh----HHHHHHHHHH--------HHC-CCC
Q 011362 141 IRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNV-----IMDEL-CKNGKM----DEASRLLDLM--------IQH-GVR 201 (487)
Q Consensus 141 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~-~~~~~~----~~a~~~~~~~--------~~~-~~~ 201 (487)
.--+....+.+ +++.|-.=+-..++|...+-.. ++..| .+.++. +++..-++.- ... ...
T Consensus 423 aLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~ 501 (911)
T KOG2034|consen 423 ALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLH 501 (911)
T ss_pred HHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455554 3333322111123333222221 12222 122221 2222222111 100 001
Q ss_pred CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHH
Q 011362 202 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLF 281 (487)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 281 (487)
.+.......-..+...|+.+....+-..+. .|..++..+++.+.+++|++++..-. ++..+....
T Consensus 502 ~~~~nretv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~a 566 (911)
T KOG2034|consen 502 KDELNRETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYA 566 (911)
T ss_pred HHhhhHHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhh
Confidence 111222233334455666666655544433 36677888889999999988876542 222222111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCC---CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 011362 282 VGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNG---YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG 358 (487)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 358 (487)
-.+ -...+.+....+....+ ..+......++..+.+.+ ....+...++-....-...++..+|.++..|+...
T Consensus 567 p~L-i~~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~ 642 (911)
T KOG2034|consen 567 PEL-ITHSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHE 642 (911)
T ss_pred hHH-HhcCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCC
Confidence 111 12223333333322222 223333444444444442 33444555444444333667888888888887654
Q ss_pred CHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCC------HHHHHHHHHHHHh
Q 011362 359 RLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ------MDKARDLFLDMEE 407 (487)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~ 407 (487)
+- .....++.....+ ....+-....++.|.+.+. ..-+.++|..+.+
T Consensus 643 ~~-~ll~~le~~~~~~-~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVd 695 (911)
T KOG2034|consen 643 RD-DLLLYLEIIKFMK-SRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVD 695 (911)
T ss_pred cc-chHHHHHHHhhcc-ccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHH
Confidence 43 3333333322211 1122223444555555443 3344555555544
No 473
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.55 E-value=1.6e+02 Score=22.51 Aligned_cols=81 Identities=7% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQG-----VQPNVVTFNVIMDELCKNGK-MDEASRLLDLMIQHGVRPDAFTYNTL 210 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 210 (487)
.+.++.-....+.+.-...+++.+.... -..+...|..++.+..+..- --.+..+|+.+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555556666666666666553211 02244556677776655444 33455666666666667777777777
Q ss_pred HHHHHcC
Q 011362 211 LDGFCLT 217 (487)
Q Consensus 211 ~~~~~~~ 217 (487)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766554
No 474
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.37 E-value=1.1e+02 Score=20.78 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=17.3
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHh
Q 011362 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIE 256 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 256 (487)
..|+.+.|.+++..+. .| +..|..++.++...|...
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555554 32 123455555555544443
No 475
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=41.23 E-value=60 Score=17.56 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALF 46 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~ 46 (487)
+..+.-.+-..|++++|+.+|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344455555666666666663
No 476
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.17 E-value=2.2e+02 Score=23.97 Aligned_cols=137 Identities=10% Similarity=0.112 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL 389 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (487)
..+...+..|...-++.-|.....++. .+.--.+.+--|.+..+..--.++.+-....+++-+..-...++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HccCCHHHHHHHHHHHHhCC------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 011362 390 CNDGQMDKARDLFLDMEENA------------VVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIV 455 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (487)
...|+..+|+..++.-...- -.|.+.....++..|... ++++|.+.+.++.+.|+.|...+-+..
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKR-NIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCHHHHHHHHH
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.11 E-value=71 Score=20.27 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
.|....++.++...+...-.+.++..+.+..+.+ ..+...|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-------~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-------SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 3556678889999999889999999999999987 45677777777777654
No 478
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.89 E-value=68 Score=22.95 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCC
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG--QMDKARDLFLDMEENAV 410 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~ 410 (487)
..++.-|...|+.++|...+.++... .-.......++..+...+ .-+-...++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 45666777889999999988886421 112233344444444442 22334455566665543
No 479
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=40.67 E-value=2.5e+02 Score=24.61 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=8.8
Q ss_pred HHHHHHHHhc-CCHHHHHHH
Q 011362 27 TSLIKGLCAE-SRIMEAAAL 45 (487)
Q Consensus 27 ~~l~~~~~~~-g~~~~A~~~ 45 (487)
.+++..+... |+.+...+.
T Consensus 33 da~vq~~~~~~gdle~vak~ 52 (412)
T KOG2297|consen 33 DAVVQGLEDNAGDLELVAKS 52 (412)
T ss_pred HHHHHHHHhcCccHHHHHHH
Confidence 4455555544 344443333
No 480
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.60 E-value=80 Score=22.73 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTI 75 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 75 (487)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 356666666777789999999988876677777767777777776544
No 481
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.51 E-value=4.1e+02 Score=27.43 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=55.1
Q ss_pred HhcCCHHHHHHHHHhccCCC------CCCcHHHHHHHHHHHH---------------ccCCHHHHHHHHHHHHhCCCCCC
Q 011362 355 CKSGRLEIALELFRSLPCGV------LVPNVVTYSIMIGGLC---------------NDGQMDKARDLFLDMEENAVVPN 413 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~ 413 (487)
...|++.+|.+.|+.++-.- -.-+..-...++..+. ..+..+.+.++-.-.....+.|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 35788888888888765210 0112222223333221 12334444444333444455554
Q ss_pred H--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 011362 414 V--ITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA 449 (487)
Q Consensus 414 ~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 449 (487)
. .+....+..+.+.+++..|..+-.++++.+..|+.
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3 34556678889999999999999999987755544
No 482
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.17 E-value=76 Score=26.35 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=33.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..+.++.+.|.++++++...- +.....|..+...--+.|+++.|.+.+++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345566666666666666542 3334456666666666666666666666666654
No 483
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.52 E-value=96 Score=19.42 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=20.8
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChhHHHHH
Q 011362 390 CNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGF-----IRINEPSKVIEL 436 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~ 436 (487)
...|++=+|-++++.+=.....|....+..+|... .+.|+...|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34555666666665554322223333444444332 244555555443
No 484
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=39.44 E-value=1.1e+02 Score=19.93 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
=+.+.|..++..+.... ..++..|+++...+.+.+
T Consensus 11 lDtEmA~~mL~DLr~de-------kRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDE-------KRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHHhcchh-------hcChHHHHHHHHHHHHcc
Confidence 35677888888877665 677889999888776654
No 485
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.98 E-value=2.3e+02 Score=23.71 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=45.7
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFG 53 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 53 (487)
.|+.+.|.+++.+++..- |.....|-.+.....+.|+++.|.+.|++.++..
T Consensus 8 ~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 8 SGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 377889999999999885 4468889999999999999999999999999875
No 486
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.86 E-value=2.8e+02 Score=24.58 Aligned_cols=141 Identities=13% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHH-HhcCC-----HHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHccCChHHHH
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGL-CAESR-----IMEAAALFTKLRVFGC----EPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~-----~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
.+++++ .....++.......++.. ....- .+.|.+.|+.....+. ..++.....+.....+.|..+.-.
T Consensus 111 ~~~~~l-~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~ 189 (324)
T PF11838_consen 111 PLYERL-GWDPRPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWD 189 (324)
T ss_dssp HHHHH---SSSS--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHH
T ss_pred HHHHHc-CCCCcccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHH
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCChhhHHHHH
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF-CYAKDWNEAKRLF 157 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~ 157 (487)
.+++.... ..+......++.+++...+.+...++++.+...+..++......+.... ......+.+.+.+
T Consensus 190 ~l~~~~~~---------~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 190 FLWELYKN---------STSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHHHHHT---------TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHHHHHhc---------cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHH
Q ss_pred HH
Q 011362 158 IE 159 (487)
Q Consensus 158 ~~ 159 (487)
..
T Consensus 261 ~~ 262 (324)
T PF11838_consen 261 KE 262 (324)
T ss_dssp HH
T ss_pred HH
No 487
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.55 E-value=1.5e+02 Score=21.18 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=20.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
-|..++..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777778888888888888877766
No 488
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.20 E-value=81 Score=22.94 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 74 (487)
-..++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 3556777777777889999999999887777777766667777766654
No 489
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.12 E-value=1.7e+02 Score=21.03 Aligned_cols=44 Identities=20% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS 72 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 72 (487)
+++..+.++...++|+++++.|.+.| ..+...-..|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
No 490
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.74 E-value=2.1e+02 Score=21.90 Aligned_cols=82 Identities=13% Similarity=0.274 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCccccccc
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGC-----EPDVFTYTTLVNGLCRTSH-TIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
..+.++.-....+++...+.+++.+..... ..+...|..++.+...... --.+..+|..+.+.+ .+.+
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~------~~~t 114 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND------IEFT 114 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC------CCCC
Confidence 347777777888999999988888754321 3455678889988866666 345677888888755 5788
Q ss_pred hHHHHHHHHHHHhc
Q 011362 99 TVTYTTIIDGLCKE 112 (487)
Q Consensus 99 ~~~~~~l~~~~~~~ 112 (487)
+.-|..++.++.+-
T Consensus 115 ~~dy~~li~~~l~g 128 (145)
T PF13762_consen 115 PSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999887654
No 491
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.04 E-value=3.4e+02 Score=24.13 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHH
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASRLLDLM 195 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 195 (487)
|..+..+.|+..+|.+.++++.+.-.-.+ ......++.++....-+.++..++-+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444566777777777777655411000 112234555555554444444444443
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.85 E-value=2.9e+02 Score=23.31 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=18.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011362 175 IMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGF 214 (487)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (487)
+++.+...++++++...+..+...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444445555555555555555554444444444444333
No 493
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.66 E-value=6.4e+02 Score=27.21 Aligned_cols=127 Identities=13% Similarity=0.051 Sum_probs=80.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
...|..+++.+-+.+-.+.+.++-..+++.- +++ ..+++.+..-....|.+.+|...+-..... ...
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--------err 1053 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--------ERR 1053 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--------HHH
Confidence 3456677888888888888888877777652 222 224667778888889888887766543321 223
Q ss_pred hHHHHHHHHHHHhcCChhH------------HHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 99 TVTYTTIIDGLCKEGFVDK------------AKE-LLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
......++..+..+|.++. ... +++..-+.........|..|-..+...+++.+|-.+.-
T Consensus 1054 rdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 4566777778888877543 333 33333233222344567777777788899988876543
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.75 E-value=2.9e+02 Score=22.58 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=35.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHH-HHHHHHHHHHccCCHHHHHHHHHHH
Q 011362 344 IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVV-TYSIMIGGLCNDGQMDKARDLFLDM 405 (487)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (487)
....+.++..+...|+++.|.+.|.-+.... ..|.. .|..-+..+.+.+......++++.|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3456677788888888888888888777643 33432 3444444444444433333333333
No 495
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=31.73 E-value=2.2e+02 Score=21.33 Aligned_cols=100 Identities=9% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
....+..+..|....-.++..++-.+...|+++.|+.+.+.+++.|.+....--..+-..+ .++.........+.
T Consensus 33 ~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~f~R~~~t~v-----aeev~~~a~~~~~~ 107 (132)
T PF05944_consen 33 LPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPDRFKRTLPTFV-----AEEVADWALRAAKA 107 (132)
T ss_pred HHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccccccCcchHHH-----HHHHHHHHHHHHHc
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHH
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKA 118 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 118 (487)
+ .+.++.........-....-.+++
T Consensus 108 g------~~~~~~~l~~~~~l~~~~dmpd~v 132 (132)
T PF05944_consen 108 G------QSFEPYFLSRVFELTADQDMPDQV 132 (132)
T ss_pred C------CCCChHHHHHHHHHHccCCCCCCC
No 496
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.50 E-value=6e+02 Score=26.27 Aligned_cols=300 Identities=11% Similarity=0.059 Sum_probs=132.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKNIKPNV--VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
..|...|++++|+++-.. .|+. .++..-+..|.+.+++..|-++|.++.+ .|..+.--+....+
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQ 431 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCC
Confidence 456678888888876432 2332 2344445667788889999999888743 24444444444445
Q ss_pred hHHHHHHH-HHHHHCCCCCCHHHHHHHH-----HHHH-cCCCH----hHHHHHHHHHHHc---------CCCCCHhhHHH
Q 011362 185 MDEASRLL-DLMIQHGVRPDAFTYNTLL-----DGFC-LTGRV----NHAKELFVSMESM---------GCKHTVFSYSI 244 (487)
Q Consensus 185 ~~~a~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~-~~~~~----~~a~~~~~~~~~~---------~~~~~~~~~~~ 244 (487)
.+ +++.| .+=++ .++|...+-..++ ..|. +.++. +++.+-++.-.+. ....+...+.+
T Consensus 432 ~~-~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 432 ER-ALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred HH-HHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 44 44333 22222 2333333322222 2211 12222 2222222111100 00111222333
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC
Q 011362 245 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY 324 (487)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (487)
........|+.+....+-.-+. -+..++..+...+.+++|++++..-. +...+....-.+ ....
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~L-i~~~ 573 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPEL-ITHS 573 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHH-HhcC
Confidence 3444455566666555443332 24566677778888888887765441 111111111111 1223
Q ss_pred HhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 325 IVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS---GRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 325 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
+.+....+..... ..++.....++..+.+. .....+...++-....-..-++..+|.++..|+...+ +.....
T Consensus 574 p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~-~~ll~~ 649 (911)
T KOG2034|consen 574 PKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER-DDLLLY 649 (911)
T ss_pred cHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc-cchHHH
Confidence 3333333333222 12222333334434333 2234444444433322123466677777777766544 344444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhc
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINE------PSKVIELLHKMKEI 443 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~ 443 (487)
++.....+.. ...-....++.|.+.+. ...+.++++++++.
T Consensus 650 le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdl 696 (911)
T KOG2034|consen 650 LEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDL 696 (911)
T ss_pred HHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHH
Confidence 4433322111 22222344555555443 23345555555543
No 497
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.30 E-value=2.8e+02 Score=22.43 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCC--------------CCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 315 FIDGLCKNGYIVEAVELFHTLRILKC--------------EFDIRAYNSLIDGLCKSGRLEIALELFR 368 (487)
Q Consensus 315 l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (487)
++..|.+..++.+...+++.+.+..+ .+.-...|.....+.+.|..+.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34445555566666666666544322 1223344555666666677777766665
No 498
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.09 E-value=5.1e+02 Score=25.27 Aligned_cols=156 Identities=17% Similarity=0.102 Sum_probs=94.9
Q ss_pred CChhHHHHHHHHHHhCC-----------CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH-------HcCCCC-------
Q 011362 113 GFVDKAKELLLQMKDKN-----------IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM-------DQGVQP------- 167 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~------- 167 (487)
..++++...|......- .+-.+.+...+...+..+|+.+.|..+.++.+ .-.+.|
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 44667777776655431 12234556667778888999887777665542 222222
Q ss_pred ------ChhhHHH---HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-cCCCHhHHHHHHHHHHHcC---
Q 011362 168 ------NVVTFNV---IMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC-LTGRVNHAKELFVSMESMG--- 234 (487)
Q Consensus 168 ------~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~--- 234 (487)
+...|.. -+..+.+.|.+..|+++.+.+.+....-|+.....+|..|+ +..++.-.+++++.....+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 1222222 24466788999999999998888766557777777787765 5667777777777664332
Q ss_pred CCCCHhhHHHHHHHHHccCC---HhHHHHHHHHHHHC
Q 011362 235 CKHTVFSYSILINGYCKNKE---IEGALSLYSEMLSK 268 (487)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 268 (487)
.-|+-.--.+++..|..... .+.|...+.+....
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 23444333455556655544 45566666665553
No 499
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.00 E-value=2.8e+02 Score=25.87 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc------
Q 011362 319 LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND------ 392 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 392 (487)
+...|.+.+|+..|+.++ +...+.......+.+++.+++.... .++...-+..-.+.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icr-------EYilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICR-------EYILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTS-TTTH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccch
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc-cccc
Q 011362 393 GQMDKARDLFLDMEENAVVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS-LNSL 469 (487)
Q Consensus 393 g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~ 469 (487)
.+..+..++--.+..-.+.|. ..++..-+..+.+.+++..|..+-+++++ +.|+.......-+.+.++.+. .++.
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLe--l~p~~~~a~qArKil~~~e~~~tDa~ 354 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLE--LNPSPEVAEQARKILQACERNPTDAH 354 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHC--T--SCHHHHHHHHHHHHHCCS--BSS
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHhcCCCCce
Q ss_pred c
Q 011362 470 P 470 (487)
Q Consensus 470 ~ 470 (487)
+
T Consensus 355 ~ 355 (422)
T PF06957_consen 355 E 355 (422)
T ss_dssp -
T ss_pred e
No 500
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.77 E-value=1.9e+02 Score=20.27 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 011362 419 MLIRGFIRINEPSKVIELLHKMKEINVMPDASIV 452 (487)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 452 (487)
.|.-.|.+.|+.+.|.+-|+.=+. .-|.+.+|
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 444456666666666666554433 33444443
Done!