Query 011362
Match_columns 487
No_of_seqs 698 out of 2489
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 06:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.8E-41 9.5E-46 326.3 39.0 436 21-475 82-576 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-40 5.1E-45 321.2 41.4 446 1-460 97-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-31 1.1E-35 241.6 48.9 383 29-428 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.9E-31 1.3E-35 241.0 46.9 375 2-393 13-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 6E-30 2E-34 236.2 24.1 190 276-465 28-226 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.4E-29 8.2E-34 232.2 24.7 210 2-217 3-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.5E-27 8.7E-32 224.4 36.4 410 23-450 6-483 (514)
8 2gw1_A Mitochondrial precursor 100.0 6.1E-27 2.1E-31 221.8 32.6 401 58-474 6-474 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 2.2E-25 7.5E-30 207.4 40.8 329 6-373 10-358 (450)
10 3fp2_A TPR repeat-containing p 100.0 2.5E-25 8.6E-30 211.9 36.8 402 23-444 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 100.0 2.4E-24 8.1E-29 200.4 40.3 371 77-465 11-441 (450)
12 3fp2_A TPR repeat-containing p 100.0 5E-25 1.7E-29 209.9 34.6 389 1-409 38-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.2E-21 4.2E-26 176.3 39.2 332 22-390 2-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.9E-21 6.6E-26 175.0 37.5 335 57-428 2-354 (359)
15 2xm6_A Protein corresponding t 99.9 8.6E-20 2.9E-24 171.0 49.2 363 8-409 27-433 (490)
16 2xm6_A Protein corresponding t 99.9 5E-19 1.7E-23 165.8 49.2 366 41-445 25-434 (490)
17 2ooe_A Cleavage stimulation fa 99.9 7.8E-20 2.7E-24 173.1 44.0 418 10-443 1-492 (530)
18 3hym_B Cell division cycle pro 99.9 6.8E-21 2.3E-25 169.2 32.7 271 20-302 19-298 (330)
19 3hym_B Cell division cycle pro 99.9 4.5E-20 1.5E-24 163.9 33.6 287 96-389 19-314 (330)
20 2ooe_A Cleavage stimulation fa 99.9 9.1E-19 3.1E-23 165.8 41.8 397 1-408 25-492 (530)
21 1fch_A Peroxisomal targeting s 99.9 7E-21 2.4E-25 172.0 24.6 294 32-336 34-357 (368)
22 1fch_A Peroxisomal targeting s 99.9 1.9E-20 6.4E-25 169.1 26.3 289 147-440 38-356 (368)
23 4g1t_A Interferon-induced prot 99.9 4E-18 1.4E-22 159.4 36.3 391 21-444 49-460 (472)
24 4eqf_A PEX5-related protein; a 99.9 1.5E-19 5.2E-24 162.9 25.4 267 58-334 65-352 (365)
25 1b89_A Protein (clathrin heavy 99.9 2E-19 7E-24 158.2 25.0 378 1-437 16-411 (449)
26 4eqf_A PEX5-related protein; a 99.9 4.4E-20 1.5E-24 166.5 20.5 267 169-439 65-352 (365)
27 4g1t_A Interferon-induced prot 99.8 6.3E-18 2.2E-22 158.0 34.6 389 56-477 49-458 (472)
28 3cv0_A Peroxisome targeting si 99.8 7.1E-19 2.4E-23 156.0 26.2 233 22-266 20-267 (327)
29 3cv0_A Peroxisome targeting si 99.8 8.1E-19 2.8E-23 155.6 25.7 263 173-441 25-313 (327)
30 1xi4_A Clathrin heavy chain; a 99.8 1.3E-16 4.3E-21 156.9 41.2 388 23-476 985-1382(1630)
31 1b89_A Protein (clathrin heavy 99.8 5.1E-19 1.7E-23 155.7 22.2 373 34-465 14-404 (449)
32 1xi4_A Clathrin heavy chain; a 99.8 1E-15 3.5E-20 150.6 46.5 395 1-463 998-1415(1630)
33 3mkr_A Coatomer subunit epsilo 99.8 4.9E-18 1.7E-22 146.6 27.2 252 30-303 6-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 3.7E-18 1.3E-22 147.4 25.2 250 1-269 12-265 (291)
35 3e4b_A ALGK; tetratricopeptide 99.8 2.8E-17 9.5E-22 151.5 26.1 378 28-441 8-419 (452)
36 3e4b_A ALGK; tetratricopeptide 99.8 3.6E-17 1.2E-21 150.8 26.6 370 2-407 17-420 (452)
37 2pl2_A Hypothetical conserved 99.8 6.5E-17 2.2E-21 133.5 21.3 200 20-231 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.8 3E-16 1E-20 133.9 23.8 233 22-268 4-236 (258)
39 2pl2_A Hypothetical conserved 99.8 2E-16 6.9E-21 130.5 21.4 201 55-267 2-213 (217)
40 4e6h_A MRNA 3'-END-processing 99.8 7.1E-14 2.4E-18 133.0 41.5 445 5-461 49-586 (679)
41 3uq3_A Heat shock protein STI1 99.8 2.8E-16 9.5E-21 134.0 22.9 223 206-442 7-235 (258)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.3E-16 4.6E-21 137.5 19.1 219 2-232 19-243 (275)
43 2h6f_A Protein farnesyltransfe 99.7 2.6E-15 8.8E-20 134.0 27.3 233 23-268 97-348 (382)
44 3u4t_A TPR repeat-containing p 99.7 1.2E-15 4.2E-20 131.2 23.7 250 205-459 4-265 (272)
45 2h6f_A Protein farnesyltransfe 99.7 2.2E-15 7.5E-20 134.4 25.0 236 1-250 110-364 (382)
46 1ouv_A Conserved hypothetical 99.7 2.6E-14 8.9E-19 122.8 31.0 225 21-269 4-252 (273)
47 3u4t_A TPR repeat-containing p 99.7 2.9E-15 9.9E-20 128.8 24.4 197 61-267 6-207 (272)
48 2ho1_A Type 4 fimbrial biogene 99.7 8.6E-15 2.9E-19 124.3 26.8 201 23-233 37-238 (252)
49 2vq2_A PILW, putative fimbrial 99.7 1E-14 3.6E-19 121.3 26.4 205 20-233 5-211 (225)
50 2q7f_A YRRB protein; TPR, prot 99.7 1.3E-15 4.6E-20 128.5 20.3 202 22-234 22-223 (243)
51 3spa_A Mtrpol, DNA-directed RN 99.7 2.3E-17 8E-22 157.1 10.0 152 308-464 126-287 (1134)
52 1ouv_A Conserved hypothetical 99.7 7.8E-14 2.7E-18 119.8 31.1 224 203-444 5-252 (273)
53 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.7E-22 158.1 7.7 125 341-465 124-252 (1134)
54 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.2E-15 7.7E-20 129.7 19.5 248 34-297 16-269 (275)
55 2ho1_A Type 4 fimbrial biogene 99.7 3.2E-14 1.1E-18 120.7 25.5 163 277-442 74-237 (252)
56 2q7f_A YRRB protein; TPR, prot 99.7 6.2E-15 2.1E-19 124.4 20.9 197 1-209 36-232 (243)
57 3sf4_A G-protein-signaling mod 99.7 4.9E-15 1.7E-19 135.4 19.8 279 20-300 6-333 (406)
58 2vq2_A PILW, putative fimbrial 99.7 8.1E-14 2.8E-18 115.9 25.3 199 58-266 8-209 (225)
59 4a1s_A PINS, partner of inscut 99.7 8.3E-15 2.8E-19 134.2 20.2 241 24-266 49-330 (411)
60 4e6h_A MRNA 3'-END-processing 99.6 6.4E-12 2.2E-16 119.7 39.7 410 2-422 80-582 (679)
61 3sf4_A G-protein-signaling mod 99.6 1.2E-14 4E-19 133.0 20.5 305 132-465 7-363 (406)
62 4a1s_A PINS, partner of inscut 99.6 7.1E-15 2.4E-19 134.6 18.6 266 1-268 61-372 (411)
63 2ond_A Cleavage stimulation fa 99.6 2.1E-13 7.1E-18 119.2 25.6 219 5-233 33-270 (308)
64 3ro2_A PINS homolog, G-protein 99.6 1.9E-14 6.5E-19 127.8 19.2 242 23-266 5-290 (338)
65 3vtx_A MAMA; tetratricopeptide 99.6 1.5E-13 5.1E-18 110.3 22.2 167 22-198 4-170 (184)
66 3ulq_A Response regulator aspa 99.6 2.9E-13 1E-17 122.5 24.7 227 33-267 22-292 (383)
67 3ro2_A PINS homolog, G-protein 99.6 1.5E-14 5.3E-19 128.4 15.9 266 1-268 18-332 (338)
68 3ulq_A Response regulator aspa 99.6 4E-13 1.4E-17 121.6 25.4 296 109-406 22-366 (383)
69 2ond_A Cleavage stimulation fa 99.6 2.8E-12 9.7E-17 112.0 29.2 235 22-268 7-270 (308)
70 4abn_A Tetratricopeptide repea 99.6 4.9E-14 1.7E-18 130.7 18.5 214 3-228 83-316 (474)
71 4abn_A Tetratricopeptide repea 99.6 8E-14 2.7E-18 129.3 19.7 196 97-298 100-316 (474)
72 3vtx_A MAMA; tetratricopeptide 99.6 4E-13 1.4E-17 107.8 20.3 88 317-406 81-168 (184)
73 3nf1_A KLC 1, kinesin light ch 99.6 2.2E-14 7.6E-19 125.9 13.9 177 21-197 25-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.5 9.3E-14 3.2E-18 121.9 12.7 248 95-371 23-305 (311)
75 3q15_A PSP28, response regulat 99.5 1.2E-11 4.2E-16 111.6 26.7 308 96-406 7-363 (378)
76 3q15_A PSP28, response regulat 99.5 1.7E-11 5.7E-16 110.6 26.7 307 21-336 8-363 (378)
77 1hz4_A MALT regulatory protein 99.5 2.1E-11 7.3E-16 109.9 27.1 276 25-301 16-320 (373)
78 4gyw_A UDP-N-acetylglucosamine 99.5 1.5E-12 5E-17 125.6 20.1 168 20-197 6-173 (723)
79 3as5_A MAMA; tetratricopeptide 99.5 4.9E-12 1.7E-16 101.4 19.8 166 23-198 8-173 (186)
80 1hz4_A MALT regulatory protein 99.5 6.7E-11 2.3E-15 106.6 28.3 270 138-407 18-321 (373)
81 3edt_B KLC 2, kinesin light ch 99.5 1.5E-12 5.3E-17 112.3 16.2 163 1-163 14-198 (283)
82 4i17_A Hypothetical protein; T 99.5 1.5E-11 5.2E-16 102.3 21.4 209 20-247 4-222 (228)
83 4i17_A Hypothetical protein; T 99.4 2.4E-11 8.3E-16 101.1 21.1 206 236-455 4-220 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.4 1E-11 3.5E-16 119.8 20.3 168 55-232 6-173 (723)
85 3as5_A MAMA; tetratricopeptide 99.4 3.4E-11 1.1E-15 96.5 19.7 162 60-231 10-171 (186)
86 2uy1_A Cleavage stimulation fa 99.4 2.6E-09 8.8E-14 98.9 32.2 376 2-441 8-411 (493)
87 3edt_B KLC 2, kinesin light ch 99.4 1.2E-11 4E-16 106.7 14.7 164 34-197 12-197 (283)
88 1qqe_A Vesicular transport pro 99.4 8.2E-11 2.8E-15 101.7 19.4 173 25-198 39-228 (292)
89 3qky_A Outer membrane assembly 99.3 1.2E-10 4.2E-15 99.0 18.5 104 20-128 12-126 (261)
90 1qqe_A Vesicular transport pro 99.3 2.7E-10 9.4E-15 98.4 20.8 164 241-406 79-267 (292)
91 3mv2_B Coatomer subunit epsilo 99.3 2.2E-09 7.7E-14 90.7 24.7 62 241-302 102-164 (310)
92 3rjv_A Putative SEL1 repeat pr 99.3 8.3E-10 2.8E-14 90.3 21.2 178 5-200 3-199 (212)
93 2pzi_A Probable serine/threoni 99.3 3.9E-11 1.3E-15 116.3 15.5 150 2-162 405-562 (681)
94 3mv2_B Coatomer subunit epsilo 99.3 9E-10 3.1E-14 93.1 21.6 244 30-303 20-282 (310)
95 3urz_A Uncharacterized protein 99.3 7.3E-11 2.5E-15 96.4 14.5 158 1-171 17-192 (208)
96 2uy1_A Cleavage stimulation fa 99.3 4.2E-09 1.4E-13 97.5 28.0 367 35-465 6-400 (493)
97 2fo7_A Synthetic consensus TPR 99.3 3.3E-10 1.1E-14 85.3 17.2 130 25-163 3-132 (136)
98 3urz_A Uncharacterized protein 99.3 2.1E-10 7.1E-15 93.7 16.7 166 22-198 3-186 (208)
99 3qky_A Outer membrane assembly 99.3 4.4E-10 1.5E-14 95.6 19.0 188 55-268 12-224 (261)
100 4ga2_A E3 SUMO-protein ligase 99.3 6.7E-11 2.3E-15 90.8 12.0 143 31-183 5-148 (150)
101 4ga2_A E3 SUMO-protein ligase 99.2 4.7E-11 1.6E-15 91.7 10.3 138 2-149 11-149 (150)
102 2vsy_A XCC0866; transferase, g 99.2 3.3E-10 1.1E-14 108.1 18.0 155 1-165 2-159 (568)
103 2pzi_A Probable serine/threoni 99.2 1.9E-10 6.5E-15 111.6 15.9 174 34-219 402-583 (681)
104 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.4E-09 8.1E-14 88.6 20.0 190 22-234 3-214 (225)
105 3qou_A Protein YBBN; thioredox 99.2 7E-10 2.4E-14 95.5 17.3 163 23-194 117-280 (287)
106 2r5s_A Uncharacterized protein 99.2 3.2E-10 1.1E-14 89.8 13.7 162 25-196 8-171 (176)
107 3dra_A Protein farnesyltransfe 99.2 4.1E-08 1.4E-12 84.0 27.4 227 30-267 39-286 (306)
108 3dra_A Protein farnesyltransfe 99.2 1.3E-08 4.5E-13 87.0 24.3 231 4-245 49-299 (306)
109 2r5s_A Uncharacterized protein 99.2 1.8E-10 6.1E-15 91.3 11.9 152 1-162 19-172 (176)
110 3rjv_A Putative SEL1 repeat pr 99.2 2.5E-09 8.5E-14 87.4 18.8 176 41-234 4-198 (212)
111 2fo7_A Synthetic consensus TPR 99.2 2.2E-09 7.4E-14 80.7 16.6 129 60-197 3-131 (136)
112 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.1E-09 1.1E-13 87.9 17.7 174 1-199 17-214 (225)
113 3qou_A Protein YBBN; thioredox 99.1 3E-09 1E-13 91.5 16.6 165 97-266 115-282 (287)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 1.7E-09 5.8E-14 94.2 14.6 193 2-196 5-222 (307)
115 2vsy_A XCC0866; transferase, g 99.1 3.8E-09 1.3E-13 100.8 17.7 155 36-200 2-159 (568)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.4E-08 8.3E-13 81.8 18.4 129 25-164 8-151 (213)
117 2e2e_A Formate-dependent nitri 99.0 5.2E-09 1.8E-13 82.9 13.4 118 2-128 24-144 (177)
118 4gco_A Protein STI-1; structur 99.0 1.2E-08 4.3E-13 75.2 14.3 109 23-140 13-121 (126)
119 2ifu_A Gamma-SNAP; membrane fu 99.0 1E-08 3.5E-13 89.3 15.7 125 35-161 3-142 (307)
120 3q7a_A Farnesyltransferase alp 99.0 3.3E-07 1.1E-11 79.2 23.6 171 3-184 69-257 (349)
121 1a17_A Serine/threonine protei 99.0 3E-08 1E-12 77.5 15.8 131 23-162 13-145 (166)
122 3gyz_A Chaperone protein IPGC; 99.0 1.5E-08 5E-13 77.2 13.3 99 22-128 35-133 (151)
123 1p5q_A FKBP52, FK506-binding p 99.0 1.6E-09 5.4E-14 95.5 9.1 150 3-161 128-292 (336)
124 3q7a_A Farnesyltransferase alp 99.0 1.1E-06 3.9E-11 75.9 26.1 175 34-219 65-257 (349)
125 2vgx_A Chaperone SYCD; alterna 99.0 4.2E-09 1.4E-13 80.4 9.9 112 8-128 7-118 (148)
126 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.7E-08 1.3E-12 80.6 16.3 124 1-129 19-151 (213)
127 4f3v_A ESX-1 secretion system 98.9 2E-08 6.9E-13 83.8 14.3 185 2-198 20-237 (282)
128 4gco_A Protein STI-1; structur 98.9 1.4E-08 4.7E-13 75.0 12.0 99 1-108 26-124 (126)
129 3u3w_A Transcriptional activat 98.9 3.3E-07 1.1E-11 79.2 22.2 161 65-230 82-263 (293)
130 1na0_A Designed protein CTPR3; 98.9 5E-08 1.7E-12 71.9 14.7 114 23-145 9-122 (125)
131 3u3w_A Transcriptional activat 98.9 3.5E-07 1.2E-11 79.0 21.9 163 280-442 81-265 (293)
132 2lni_A Stress-induced-phosphop 98.9 3.7E-08 1.3E-12 73.6 13.8 119 21-148 14-132 (133)
133 3gw4_A Uncharacterized protein 98.9 2E-08 6.9E-13 81.5 12.9 161 1-162 5-175 (203)
134 2vyi_A SGTA protein; chaperone 98.9 3.9E-08 1.3E-12 73.2 13.2 120 22-150 11-130 (131)
135 3gyz_A Chaperone protein IPGC; 98.9 3.9E-09 1.3E-13 80.4 7.5 99 57-163 35-133 (151)
136 3gw4_A Uncharacterized protein 98.9 3.3E-08 1.1E-12 80.2 13.6 163 33-197 2-175 (203)
137 2c2l_A CHIP, carboxy terminus 98.9 3E-08 1E-12 85.0 13.5 96 23-126 4-99 (281)
138 1a17_A Serine/threonine protei 98.9 8.9E-08 3E-12 74.7 14.9 129 310-441 14-144 (166)
139 2c2l_A CHIP, carboxy terminus 98.9 2.4E-08 8.4E-13 85.5 12.4 197 56-268 2-199 (281)
140 2qfc_A PLCR protein; TPR, HTH, 98.9 4.5E-07 1.5E-11 78.3 20.5 95 136-230 157-263 (293)
141 2qfc_A PLCR protein; TPR, HTH, 98.8 3.5E-07 1.2E-11 79.0 19.4 171 97-267 73-265 (293)
142 4f3v_A ESX-1 secretion system 98.8 2.5E-07 8.4E-12 77.3 17.3 196 35-234 18-238 (282)
143 2e2e_A Formate-dependent nitri 98.8 6.6E-08 2.3E-12 76.5 13.4 123 33-164 20-145 (177)
144 2xcb_A PCRH, regulatory protei 98.8 2.4E-08 8.2E-13 75.7 10.4 111 9-128 5-115 (142)
145 2vgx_A Chaperone SYCD; alterna 98.8 2.7E-08 9.2E-13 75.9 10.6 111 44-163 8-118 (148)
146 2lni_A Stress-induced-phosphop 98.8 1E-07 3.6E-12 71.1 13.8 119 342-463 14-132 (133)
147 3dss_A Geranylgeranyl transfer 98.8 5.6E-06 1.9E-10 71.2 25.9 225 33-269 39-305 (331)
148 4gcn_A Protein STI-1; structur 98.8 6.4E-08 2.2E-12 71.5 12.1 113 23-138 8-120 (127)
149 1na0_A Designed protein CTPR3; 98.8 1.4E-07 4.6E-12 69.5 13.7 114 344-460 9-122 (125)
150 3upv_A Heat shock protein STI1 98.8 1.4E-07 4.9E-12 69.7 13.4 98 23-128 4-101 (126)
151 2fbn_A 70 kDa peptidylprolyl i 98.8 9.6E-09 3.3E-13 83.1 7.3 120 24-152 39-174 (198)
152 2vyi_A SGTA protein; chaperone 98.8 1.8E-07 6.1E-12 69.5 13.5 114 347-463 15-128 (131)
153 1elw_A TPR1-domain of HOP; HOP 98.8 4.2E-07 1.4E-11 66.0 14.8 110 23-141 4-113 (118)
154 2kck_A TPR repeat; tetratricop 98.8 1.4E-07 4.8E-12 67.8 12.0 99 22-128 5-106 (112)
155 3dss_A Geranylgeranyl transfer 98.7 1.5E-05 5.2E-10 68.6 25.8 237 69-318 40-318 (331)
156 1p5q_A FKBP52, FK506-binding p 98.7 2.3E-07 7.8E-12 81.7 14.2 129 311-441 149-292 (336)
157 4gcn_A Protein STI-1; structur 98.7 1.3E-07 4.3E-12 69.9 10.4 105 347-454 11-121 (127)
158 2xcb_A PCRH, regulatory protei 98.7 1E-07 3.5E-12 72.1 10.0 99 57-163 17-115 (142)
159 3q49_B STIP1 homology and U bo 98.7 4.7E-07 1.6E-11 67.9 13.7 101 20-128 6-106 (137)
160 1elr_A TPR2A-domain of HOP; HO 98.7 1.7E-07 5.8E-12 69.7 10.8 111 23-143 4-121 (131)
161 2fbn_A 70 kDa peptidylprolyl i 98.7 2.9E-08 1E-12 80.2 7.0 157 28-189 9-176 (198)
162 3sz7_A HSC70 cochaperone (SGT) 98.7 4.4E-07 1.5E-11 70.6 13.4 99 22-128 10-108 (164)
163 3upv_A Heat shock protein STI1 98.7 4.6E-07 1.6E-11 66.9 12.7 92 313-406 8-99 (126)
164 3k9i_A BH0479 protein; putativ 98.7 7.2E-08 2.5E-12 70.2 8.1 87 1-88 3-91 (117)
165 2dba_A Smooth muscle cell asso 98.6 1.4E-06 4.7E-11 66.3 15.2 99 21-128 26-128 (148)
166 1hxi_A PEX5, peroxisome target 98.6 3.2E-07 1.1E-11 67.0 10.9 96 25-128 19-114 (121)
167 1elw_A TPR1-domain of HOP; HOP 98.6 9E-07 3.1E-11 64.2 13.4 96 346-443 6-101 (118)
168 2kck_A TPR repeat; tetratricop 98.6 5.3E-07 1.8E-11 64.7 11.7 100 57-164 5-107 (112)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 6.1E-08 2.1E-12 89.2 7.7 143 3-154 249-405 (457)
170 2dba_A Smooth muscle cell asso 98.6 2.2E-06 7.7E-11 65.1 15.0 113 342-458 26-142 (148)
171 4b4t_Q 26S proteasome regulato 98.6 1.4E-06 4.8E-11 80.0 15.8 194 2-196 18-243 (434)
172 3sz7_A HSC70 cochaperone (SGT) 98.6 1.5E-06 5.3E-11 67.5 13.3 99 57-163 10-108 (164)
173 1hxi_A PEX5, peroxisome target 98.6 3.8E-07 1.3E-11 66.6 9.1 86 1-88 30-115 (121)
174 2xev_A YBGF; tetratricopeptide 98.5 2.9E-06 1E-10 62.7 14.1 95 26-128 5-105 (129)
175 4b4t_Q 26S proteasome regulato 98.5 4.6E-06 1.6E-10 76.5 18.4 201 30-231 11-243 (434)
176 1wao_1 Serine/threonine protei 98.5 2.6E-07 8.7E-12 85.5 9.7 114 1-123 19-134 (477)
177 1elr_A TPR2A-domain of HOP; HO 98.5 5.7E-07 1.9E-11 66.7 9.9 94 348-442 8-107 (131)
178 3q49_B STIP1 homology and U bo 98.5 2.4E-06 8.1E-11 64.0 13.2 100 56-163 7-106 (137)
179 2xev_A YBGF; tetratricopeptide 98.5 3E-06 1E-10 62.7 12.8 86 1-88 15-106 (129)
180 3ro3_A PINS homolog, G-protein 98.5 1.3E-06 4.6E-11 67.5 11.2 139 23-162 9-157 (164)
181 1wao_1 Serine/threonine protei 98.5 1.7E-07 6E-12 86.6 6.5 125 25-158 8-134 (477)
182 3rkv_A Putative peptidylprolyl 98.5 2.8E-06 9.7E-11 65.8 12.3 99 23-128 11-126 (162)
183 1ihg_A Cyclophilin 40; ppiase 98.4 3.1E-06 1.1E-10 75.3 13.1 97 24-127 224-335 (370)
184 3k9i_A BH0479 protein; putativ 98.4 7.3E-07 2.5E-11 64.7 7.0 86 36-128 3-90 (117)
185 2hr2_A Hypothetical protein; a 98.4 6.9E-06 2.4E-10 61.7 12.1 99 23-128 11-131 (159)
186 3ro3_A PINS homolog, G-protein 98.4 2.3E-06 7.9E-11 66.1 9.9 132 311-442 11-157 (164)
187 3rkv_A Putative peptidylprolyl 98.4 4.8E-06 1.6E-10 64.5 11.4 65 379-444 63-127 (162)
188 1ihg_A Cyclophilin 40; ppiase 98.3 6.7E-06 2.3E-10 73.1 13.2 119 312-432 226-359 (370)
189 2kat_A Uncharacterized protein 98.3 4.2E-06 1.4E-10 60.4 10.0 83 4-88 1-83 (115)
190 2if4_A ATFKBP42; FKBP-like, al 98.3 2E-06 6.8E-11 75.7 9.7 148 23-197 179-327 (338)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.4E-06 1.2E-10 77.6 11.7 118 1-126 281-413 (457)
192 2l6j_A TPR repeat-containing p 98.3 1E-05 3.5E-10 57.8 11.7 98 377-477 2-106 (111)
193 1dce_A Protein (RAB geranylger 98.3 4.5E-05 1.5E-09 71.8 18.4 172 291-467 46-244 (567)
194 1dce_A Protein (RAB geranylger 98.3 4.2E-05 1.4E-09 72.1 18.0 169 5-184 46-241 (567)
195 1klx_A Cysteine rich protein B 98.3 2.8E-05 9.5E-10 58.1 13.6 109 38-163 10-126 (138)
196 1klx_A Cysteine rich protein B 98.3 2.3E-05 8E-10 58.5 13.2 112 2-130 9-128 (138)
197 2l6j_A TPR repeat-containing p 98.3 1E-06 3.4E-11 63.2 5.5 95 22-124 3-103 (111)
198 2if4_A ATFKBP42; FKBP-like, al 98.2 3.7E-06 1.3E-10 74.0 9.1 119 1-128 192-328 (338)
199 1zu2_A Mitochondrial import re 98.2 4.1E-06 1.4E-10 62.8 8.0 97 2-108 16-133 (158)
200 2hr2_A Hypothetical protein; a 98.2 8.7E-06 3E-10 61.2 9.7 87 1-88 24-132 (159)
201 1na3_A Designed protein CTPR2; 98.2 1.3E-05 4.4E-10 54.8 10.0 84 22-113 8-91 (91)
202 3n71_A Histone lysine methyltr 98.1 4.2E-06 1.4E-10 76.8 7.5 127 1-127 322-463 (490)
203 3n71_A Histone lysine methyltr 98.1 7.6E-06 2.6E-10 75.1 9.0 131 32-162 318-463 (490)
204 1zu2_A Mitochondrial import re 98.0 1.4E-05 4.9E-10 59.9 7.2 99 34-142 13-132 (158)
205 2kat_A Uncharacterized protein 98.0 4E-05 1.4E-09 55.1 9.2 80 41-128 3-82 (115)
206 3ma5_A Tetratricopeptide repea 98.0 3.8E-05 1.3E-09 53.6 8.4 67 20-87 4-70 (100)
207 1na3_A Designed protein CTPR2; 97.9 0.00016 5.4E-09 49.2 10.9 81 379-461 9-89 (91)
208 3ma5_A Tetratricopeptide repea 97.7 0.00024 8.1E-09 49.4 8.5 67 55-128 4-70 (100)
209 3ly7_A Transcriptional activat 97.6 0.0021 7.1E-08 55.7 14.8 137 19-163 190-339 (372)
210 3ly7_A Transcriptional activat 97.6 0.0016 5.3E-08 56.4 13.8 75 376-454 274-348 (372)
211 3qww_A SET and MYND domain-con 97.5 0.0004 1.4E-08 62.7 9.6 85 2-86 312-410 (433)
212 2kc7_A BFR218_protein; tetratr 97.4 0.0018 6.2E-08 44.6 10.0 59 29-88 6-65 (99)
213 3bee_A Putative YFRE protein; 97.4 0.0027 9.3E-08 43.1 10.1 68 20-88 3-73 (93)
214 3u64_A Protein TP_0956; tetrat 97.3 0.03 1E-06 46.5 17.2 93 115-209 179-282 (301)
215 2kc7_A BFR218_protein; tetratr 97.3 0.00048 1.6E-08 47.6 5.7 76 1-86 13-89 (99)
216 3qwp_A SET and MYND domain-con 97.3 0.002 6.9E-08 58.2 11.2 99 64-162 293-399 (429)
217 1pc2_A Mitochondria fission pr 97.2 0.002 6.9E-08 47.7 8.7 87 362-452 16-107 (152)
218 1pc2_A Mitochondria fission pr 97.2 0.0024 8.4E-08 47.3 9.0 83 4-88 14-101 (152)
219 3qww_A SET and MYND domain-con 97.2 0.00092 3.1E-08 60.3 8.1 93 70-162 310-410 (433)
220 3qwp_A SET and MYND domain-con 97.2 0.0028 9.5E-08 57.3 10.8 105 351-455 294-415 (429)
221 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0055 1.9E-07 42.7 9.7 67 22-88 4-76 (104)
222 3bee_A Putative YFRE protein; 97.1 0.0049 1.7E-07 41.8 9.1 66 56-128 4-72 (93)
223 3mkq_B Coatomer subunit alpha; 96.8 0.1 3.5E-06 39.7 14.6 129 31-195 13-141 (177)
224 3mkq_A Coatomer beta'-subunit; 96.8 0.091 3.1E-06 52.3 19.1 47 422-473 757-809 (814)
225 3lvg_A Clathrin heavy chain 1; 96.8 4.9E-05 1.7E-09 67.1 -3.9 116 22-158 53-168 (624)
226 3mkq_A Coatomer beta'-subunit; 96.6 0.077 2.6E-06 52.8 17.4 75 173-265 633-707 (814)
227 3u64_A Protein TP_0956; tetrat 96.6 0.016 5.3E-07 48.1 9.9 86 3-88 178-270 (301)
228 2v5f_A Prolyl 4-hydroxylase su 96.6 0.033 1.1E-06 38.6 10.1 61 382-442 8-74 (104)
229 4h7y_A Dual specificity protei 96.5 0.025 8.5E-07 41.3 9.2 117 341-460 10-139 (161)
230 3mkq_B Coatomer subunit alpha; 96.4 0.21 7.3E-06 38.0 16.4 130 65-230 12-141 (177)
231 4h7y_A Dual specificity protei 96.3 0.1 3.6E-06 38.1 11.3 51 288-339 74-124 (161)
232 1nzn_A CGI-135 protein, fissio 96.3 0.032 1.1E-06 39.7 8.6 65 377-442 33-102 (126)
233 3lvg_A Clathrin heavy chain 1; 96.1 1.5E-06 5.3E-11 76.3 -17.2 265 98-399 53-324 (624)
234 1nzn_A CGI-135 protein, fissio 96.1 0.043 1.5E-06 39.0 8.4 84 323-408 15-103 (126)
235 4ady_A RPN2, 26S proteasome re 95.9 1.5 5.3E-05 43.3 26.5 260 142-407 382-657 (963)
236 1wy6_A Hypothetical protein ST 95.8 0.34 1.2E-05 34.7 15.0 140 110-271 18-157 (172)
237 4b4t_P 26S proteasome regulato 95.5 1.4 4.8E-05 39.9 19.2 192 2-197 30-246 (445)
238 1wy6_A Hypothetical protein ST 95.1 0.59 2E-05 33.5 15.0 68 378-446 90-157 (172)
239 4b4t_P 26S proteasome regulato 95.0 2 6.7E-05 39.0 18.9 189 36-231 29-245 (445)
240 2ff4_A Probable regulatory pro 94.4 0.32 1.1E-05 43.2 10.7 58 347-405 174-231 (388)
241 1y8m_A FIS1; mitochondria, unk 94.2 0.97 3.3E-05 32.8 10.7 74 376-451 36-112 (144)
242 3o48_A Mitochondria fission 1 94.2 0.67 2.3E-05 33.1 9.6 75 376-452 37-114 (134)
243 4gns_B Protein CSD3, chitin bi 93.9 0.63 2.1E-05 45.0 12.0 50 413-464 612-661 (754)
244 4gns_B Protein CSD3, chitin bi 93.7 0.61 2.1E-05 45.0 11.6 131 27-160 252-397 (754)
245 2ff4_A Probable regulatory pro 93.5 0.33 1.1E-05 43.1 9.0 72 101-173 173-249 (388)
246 4ady_A RPN2, 26S proteasome re 93.3 7 0.00024 38.8 36.6 275 178-463 383-675 (963)
247 3o48_A Mitochondria fission 1 93.0 1.1 3.7E-05 32.1 9.1 71 18-88 35-108 (134)
248 3ffl_A Anaphase-promoting comp 92.9 0.7 2.4E-05 34.6 8.3 64 23-86 20-91 (167)
249 1v54_E Cytochrome C oxidase po 92.6 1.6 5.4E-05 29.3 10.1 63 394-457 25-87 (109)
250 4fhn_B Nucleoporin NUP120; pro 92.2 12 0.00042 38.8 19.8 167 27-221 816-988 (1139)
251 3ffl_A Anaphase-promoting comp 91.8 0.75 2.6E-05 34.4 7.3 86 2-87 34-151 (167)
252 2y69_E Cytochrome C oxidase su 91.2 3.1 0.0001 29.7 10.1 64 394-458 68-131 (152)
253 4fhn_B Nucleoporin NUP120; pro 90.6 5.9 0.0002 41.0 15.3 150 313-469 816-991 (1139)
254 2wpv_A GET4, UPF0363 protein Y 90.6 7.2 0.00025 33.1 14.9 45 4-48 13-58 (312)
255 2wpv_A GET4, UPF0363 protein Y 89.1 9.5 0.00033 32.3 18.9 167 60-266 35-215 (312)
256 1zbp_A Hypothetical protein VP 88.8 1.7 5.7E-05 35.6 7.6 57 31-88 5-61 (273)
257 4b4t_R RPN7, 26S proteasome re 88.1 6.5 0.00022 35.4 12.0 60 101-160 133-194 (429)
258 1y8m_A FIS1; mitochondria, unk 87.9 6.2 0.00021 28.7 12.4 69 20-88 36-107 (144)
259 1qsa_A Protein (soluble lytic 87.3 20 0.00069 34.0 28.4 80 100-185 73-152 (618)
260 1qsa_A Protein (soluble lytic 87.1 21 0.00072 33.9 36.1 333 62-435 76-434 (618)
261 3lpz_A GET4 (YOR164C homolog); 86.9 14 0.00047 31.6 21.8 167 61-267 38-215 (336)
262 1v54_E Cytochrome C oxidase po 86.5 5.6 0.00019 26.8 9.6 63 114-177 25-87 (109)
263 4b4t_R RPN7, 26S proteasome re 86.4 4.1 0.00014 36.7 9.7 99 60-162 133-236 (429)
264 1zbp_A Hypothetical protein VP 83.2 18 0.00061 29.7 14.3 114 1-128 10-129 (273)
265 2y69_E Cytochrome C oxidase su 83.1 11 0.00036 27.1 9.6 61 115-176 69-129 (152)
266 3lpz_A GET4 (YOR164C homolog); 82.9 22 0.00074 30.5 21.8 166 242-441 38-214 (336)
267 3txn_A 26S proteasome regulato 82.7 25 0.00085 31.0 23.0 25 171-195 21-45 (394)
268 3esl_A Checkpoint serine/threo 81.4 17 0.00058 28.3 10.0 56 72-132 93-148 (202)
269 4b4t_S RPN3, 26S proteasome re 79.3 27 0.00094 32.0 11.8 66 23-88 231-300 (523)
270 3txn_A 26S proteasome regulato 78.7 34 0.0012 30.2 22.7 167 24-195 20-207 (394)
271 2uwj_G Type III export protein 74.6 17 0.00057 24.4 9.2 80 36-129 19-98 (115)
272 2p58_C Putative type III secre 73.8 18 0.0006 24.3 10.1 81 35-129 19-99 (116)
273 2uwj_G Type III export protein 73.0 18 0.00062 24.2 7.9 78 3-88 21-98 (115)
274 2wvi_A Mitotic checkpoint seri 72.1 16 0.00055 27.4 7.0 50 40-89 77-127 (164)
275 3ltm_A Alpha-REP4; protein eng 68.1 41 0.0014 26.2 18.7 111 342-464 93-203 (211)
276 3esl_A Checkpoint serine/threo 67.6 42 0.0014 26.2 12.3 53 360-412 95-148 (202)
277 2d2s_A Exocyst complex compone 66.2 48 0.0017 26.7 9.3 89 29-126 24-118 (235)
278 4aez_C MAD3, mitotic spindle c 64.4 24 0.00082 28.0 6.9 50 40-89 131-181 (223)
279 2nsz_A Programmed cell death p 60.9 38 0.0013 24.1 7.1 65 346-411 9-75 (129)
280 2ijq_A Hypothetical protein; s 58.7 23 0.00077 26.5 5.6 50 2-51 46-103 (161)
281 4a1g_A Mitotic checkpoint seri 57.0 56 0.0019 24.1 12.3 50 118-167 84-134 (152)
282 3eiq_C Programmed cell death p 56.6 99 0.0034 26.8 12.2 59 206-266 56-116 (358)
283 2xig_A Ferric uptake regulatio 56.4 57 0.0019 24.0 7.6 62 403-465 16-77 (150)
284 3bu8_A Telomeric repeat-bindin 55.6 73 0.0025 25.0 8.2 85 4-88 35-144 (235)
285 2zu6_B Programmed cell death p 54.5 85 0.0029 26.5 9.2 58 207-266 6-65 (307)
286 2fu4_A Ferric uptake regulatio 54.4 39 0.0013 21.5 6.9 63 403-466 6-69 (83)
287 1bpo_A Protein (clathrin); cla 54.3 1.2E+02 0.0043 27.3 10.9 110 36-156 342-451 (494)
288 2fe3_A Peroxide operon regulat 53.9 61 0.0021 23.6 8.2 62 403-465 11-72 (145)
289 2wvi_A Mitotic checkpoint seri 53.8 67 0.0023 24.0 11.6 55 398-452 79-134 (164)
290 1mzb_A Ferric uptake regulatio 53.6 55 0.0019 23.5 7.0 61 404-465 8-69 (136)
291 4ets_A Ferric uptake regulatio 51.5 28 0.00097 26.0 5.3 69 5-74 14-85 (162)
292 2w57_A Ferric uptake regulatio 51.3 58 0.002 23.9 6.9 62 403-465 6-68 (150)
293 4gq2_M Nucleoporin NUP120; bet 50.6 2.1E+02 0.0073 28.9 13.2 49 415-463 898-950 (950)
294 2ion_A PDCD4, programmed cell 50.4 39 0.0013 24.9 5.8 116 346-473 11-129 (152)
295 3eyy_A Putative iron uptake re 50.2 63 0.0022 23.5 6.9 61 403-465 8-68 (145)
296 2fe3_A Peroxide operon regulat 46.7 81 0.0028 22.9 7.5 61 13-74 12-72 (145)
297 4b4t_S RPN3, 26S proteasome re 45.5 1.9E+02 0.0063 26.7 11.5 66 98-163 230-299 (523)
298 2xig_A Ferric uptake regulatio 44.9 89 0.003 22.9 7.8 59 125-184 18-76 (150)
299 4a1g_A Mitotic checkpoint seri 43.1 98 0.0033 22.8 12.3 54 398-451 84-138 (152)
300 3eyy_A Putative iron uptake re 42.5 72 0.0025 23.2 6.2 60 13-74 9-68 (145)
301 4gq2_M Nucleoporin NUP120; bet 42.4 2.9E+02 0.0098 28.0 14.1 131 29-183 816-950 (950)
302 1mzb_A Ferric uptake regulatio 41.9 84 0.0029 22.5 6.4 60 14-74 9-69 (136)
303 2ijq_A Hypothetical protein; s 41.1 1.1E+02 0.0037 22.8 8.5 54 389-442 42-103 (161)
304 2p58_C Putative type III secre 41.0 81 0.0028 21.3 11.1 51 353-409 49-99 (116)
305 3pvs_A Replication-associated 40.1 2.1E+02 0.0071 25.8 14.7 56 216-271 267-327 (447)
306 2w57_A Ferric uptake regulatio 39.9 98 0.0033 22.7 6.6 59 125-184 8-67 (150)
307 2d2s_A Exocyst complex compone 38.0 1.6E+02 0.0054 23.7 9.2 28 203-230 90-117 (235)
308 4ets_A Ferric uptake regulatio 37.7 81 0.0028 23.5 5.9 57 231-288 25-83 (162)
309 4aez_C MAD3, mitotic spindle c 37.0 1.6E+02 0.0054 23.4 10.8 60 396-455 131-191 (223)
310 1wdy_A 2-5A-dependent ribonucl 36.8 1.6E+02 0.0054 23.8 8.5 20 28-47 7-26 (285)
311 2qx5_A Nucleoporin NIC96; mRNA 36.8 2.9E+02 0.0099 26.5 22.0 81 174-265 299-382 (661)
312 1wdy_A 2-5A-dependent ribonucl 36.3 1.7E+02 0.0058 23.6 9.4 14 108-121 11-24 (285)
313 2b7e_A PRE-mRNA processing pro 36.1 46 0.0016 19.8 3.3 29 151-179 3-31 (59)
314 1ya0_A SMG-7 transcript varian 35.9 2.6E+02 0.0089 25.6 10.7 75 29-111 158-232 (497)
315 2o03_A Probable zinc uptake re 35.2 74 0.0025 22.6 5.2 46 420-465 16-61 (131)
316 2o03_A Probable zinc uptake re 34.7 65 0.0022 22.9 4.8 49 27-75 14-62 (131)
317 3mwm_A ZUR, putative metal upt 32.0 75 0.0026 22.9 4.8 46 420-465 19-64 (139)
318 2cos_A Serine/threonine protei 31.6 77 0.0026 18.3 4.4 38 7-49 9-48 (54)
319 3kea_A K1L; tropism, ANK repea 31.2 1.7E+02 0.0059 24.0 7.7 188 29-241 34-225 (285)
320 2f6m_A Suppressor protein STP2 30.9 92 0.0031 18.9 4.1 46 25-71 4-49 (65)
321 3mwm_A ZUR, putative metal upt 30.7 59 0.002 23.4 4.1 49 26-74 16-64 (139)
322 3mv2_A Coatomer subunit alpha; 30.5 2.5E+02 0.0086 23.8 11.1 49 396-444 187-237 (325)
323 3bu8_A Telomeric repeat-bindin 30.3 2E+02 0.0069 22.7 13.0 84 37-128 33-143 (235)
324 2r9g_A AAA ATPase, central reg 29.3 2E+02 0.0069 22.3 10.8 37 181-218 26-62 (204)
325 3jxi_A Vanilloid receptor-rela 29.2 84 0.0029 25.3 5.4 53 108-160 11-72 (260)
326 3bge_A Predicted ATPase; struc 28.9 2E+02 0.007 22.3 9.4 100 168-267 3-110 (201)
327 2ion_A PDCD4, programmed cell 28.4 1.8E+02 0.006 21.4 8.4 22 63-84 14-35 (152)
328 3ctd_A Putative ATPase, AAA fa 27.1 2.3E+02 0.0078 22.2 10.4 65 172-236 35-107 (213)
329 2fu4_A Ferric uptake regulatio 26.7 1.2E+02 0.0042 19.0 6.5 58 125-183 8-66 (83)
330 3ygs_P Procaspase 9; apoptosis 25.9 1.1E+02 0.0036 20.4 4.3 39 72-120 51-89 (97)
331 3ltm_A Alpha-REP4; protein eng 25.7 2.3E+02 0.0077 21.7 20.3 17 203-219 156-172 (211)
332 1ug3_A EIF4GI, eukaryotic prot 25.5 1.7E+02 0.006 25.0 6.7 147 311-465 13-170 (339)
333 2cwy_A Hypothetical protein TT 23.1 1.5E+02 0.0051 19.6 4.6 52 389-442 11-67 (94)
334 2qx5_A Nucleoporin NIC96; mRNA 23.0 5.1E+02 0.017 24.9 21.3 80 209-300 299-382 (661)
335 3jxi_A Vanilloid receptor-rela 22.7 68 0.0023 25.9 3.6 57 29-85 8-73 (260)
336 3bqo_A Telomeric repeat-bindin 22.0 1.3E+02 0.0043 23.4 4.4 86 3-88 40-147 (211)
337 2rg8_A Programmed cell death p 22.0 1E+02 0.0034 23.1 4.0 26 347-372 13-38 (165)
338 2nsz_A Programmed cell death p 21.4 2.2E+02 0.0076 20.1 9.7 22 63-84 12-33 (129)
339 3mv2_A Coatomer subunit alpha; 21.2 3.8E+02 0.013 22.8 12.1 28 137-164 210-237 (325)
340 2crb_A Nuclear receptor bindin 21.0 1.9E+02 0.0064 19.1 4.4 27 24-50 16-42 (97)
341 3lxu_X Tripeptidyl-peptidase 2 20.9 5.7E+02 0.019 27.1 10.0 50 390-442 1295-1344(1354)
342 2i2x_B MTAC, methyltransferase 20.9 82 0.0028 25.8 3.6 41 425-465 47-87 (258)
343 1bpo_A Protein (clathrin); cla 20.4 4.9E+02 0.017 23.6 13.0 103 13-123 351-453 (494)
344 2zu6_B Programmed cell death p 20.4 3.9E+02 0.013 22.5 11.4 64 347-411 169-234 (307)
345 3bqo_A Telomeric repeat-bindin 20.3 1.5E+02 0.0051 23.0 4.5 48 5-52 95-146 (211)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-41 Score=326.29 Aligned_cols=436 Identities=11% Similarity=0.037 Sum_probs=375.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+++..|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|+.+|+++.. .+++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~ 151 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------YNRSSA 151 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--------GGTCHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--------cccchh
Confidence 57888999999999999999999999999865 57778889999999999999999999998865 367889
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDK---------------NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 165 (487)
+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.++
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999853222 2234578999999999999999999999999988643
Q ss_pred CCChhhHHHH--------------------------------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 011362 166 QPNVVTFNVI--------------------------------------MDELCKNGKMDEASRLLDLMIQHGVRPDAFTY 207 (487)
Q Consensus 166 ~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 207 (487)
. +...+..+ +..|.+.|++++|.++|+.+.+. +++..++
T Consensus 232 ~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 232 K-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp T-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred h-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 2 33333322 34455778899999999988765 5789999
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc
Q 011362 208 NTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI 287 (487)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (487)
..++..+.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh
Confidence 999999999999999999999998876 5578889999999999999999999999998653 34778899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 011362 288 HQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELF 367 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (487)
|++++|..+|+++.+.. +.+..++..++..|.+.|++++|..+|+++.... +.+..++..++.+|.+.|++++|.++|
T Consensus 387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998753 4567889999999999999999999999998775 668889999999999999999999999
Q ss_pred HhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 368 RSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN----AVVPN--VITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998753 557889999999999999999999999999875 55777 7899999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 011362 442 EINVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 475 (487)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 475 (487)
+.+ +.+..++..++.+|.+.|+++++++.+...
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 876 557899999999999999997777766543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-40 Score=321.15 Aligned_cols=446 Identities=12% Similarity=0.012 Sum_probs=383.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+.+|++++.. .|+..++..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|+++
T Consensus 97 ~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 48899999999999975 467788999999999999999999999998754 68889999999999999999999999
Q ss_pred HHHHHhCCC---------CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH-----------
Q 011362 81 FEEMANGNG---------EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV----------- 140 (487)
Q Consensus 81 ~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 140 (487)
|+++..... ......+.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+...+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHH
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhH
Confidence 995322210 00001245689999999999999999999999999988642 234444333
Q ss_pred ---------------------------HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011362 141 ---------------------------IRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 193 (487)
Q Consensus 141 ---------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 193 (487)
+..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44556788999999999998775 5789999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC
Q 011362 194 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 273 (487)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 273 (487)
.+.+.+.. +..++..++.++...|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+... .+
T Consensus 330 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 406 (597)
T 2xpi_A 330 KILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QF 406 (597)
T ss_dssp HHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CC
Confidence 99987533 77889999999999999999999999998764 66788999999999999999999999999987533 36
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 011362 274 VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDG 353 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (487)
..++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.++.+|+.++..
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 7799999999999999999999999998874 4577899999999999999999999999999875 6688999999999
Q ss_pred HHhcCCHHHHHHHHHhccCC----CCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011362 354 LCKSGRLEIALELFRSLPCG----VLVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRI 427 (487)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (487)
|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|...++++.+.+ +.+..+|..++.+|...
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh
Confidence 99999999999999998764 44676 7899999999999999999999999998864 34789999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 428 NEPSKVIELLHKMKEINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 428 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (487)
|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 564 g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 564 KIPGLAITHLHESLAIS-PNEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 99999999999999865 445666666665543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.2e-31 Score=241.56 Aligned_cols=383 Identities=14% Similarity=0.081 Sum_probs=288.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. |.+...|..++.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHH
Confidence 4566778889999999888887764 4556677777888888899999998888888765 6678888888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 188 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 188 (487)
+.+.|++++|.+.|+++.+.. +.+..+|..++.++...|++++|.+.|+++.+..+. +...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 989999999999998887753 335667888888888889999999988888876432 445566777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 189 SRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
...|+.+.+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+....
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888887763 2357788888888888888888888888888765 556677888888888888888888888887765
Q ss_pred CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHH
Q 011362 269 GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYN 348 (487)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 348 (487)
.+. +..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++.
T Consensus 233 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 SPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 322 45667777777788888888888888777753 3345667777777777888888888887777664 56677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011362 349 SLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (487)
.+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|...|+++.+.. +.+...|..+...+...|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 77777777777888877777777652 4456677777777777777777777777777642 124555555555555444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.9e-31 Score=240.97 Aligned_cols=375 Identities=14% Similarity=0.021 Sum_probs=331.8
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|++.++.+++.. |.+...+..+...+...|++++|...++.+.+.. +.+..+|..++.++.+.|++++|+..|
T Consensus 13 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 89999999999999986 5578888889999999999999999999998875 667889999999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+++.+.. |.+...|..++.++...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.
T Consensus 91 ~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 91 RHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999865 5667889999999999999999999999998864 3356678889999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
+..+. +..++..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++..... |.+..+
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 87433 577899999999999999999999999998743 367889999999999999999999999998875 557888
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (487)
+..+..++...|++++|...++++.+.++. +..++..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 999999999999999999999999987543 56788999999999999999999999998874 5678899999999999
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.|++++|...++++.+.. +.+..++..++..+.+.|++++|...|+++.+.. +.+...|..+...+...|
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 999999999999998764 6678899999999999999999999999998763 445678888877776655
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6e-30 Score=236.20 Aligned_cols=190 Identities=17% Similarity=0.277 Sum_probs=137.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC---------HhHHHHHHHHHHHcCCCCChHh
Q 011362 276 IHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY---------IVEAVELFHTLRILKCEFDIRA 346 (487)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 346 (487)
.++.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.+. +++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455556666666666666666666666666666666666666654433 5667777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR 426 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (487)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 427 INEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
.|+.++|.+++++|.+.|..|+..++..++..|++.+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~ 226 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVAT 226 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcch
Confidence 777777777777777777777777777777777665443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.4e-29 Score=232.18 Aligned_cols=210 Identities=16% Similarity=0.226 Sum_probs=157.1
Q ss_pred CccchH-HHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC------
Q 011362 2 GRVSHG-FVVLGRILKSCFTPDA-VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH------ 73 (487)
Q Consensus 2 g~~~~A-~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 73 (487)
|+...+ ..+.+.+.+.+..+.+ ..++.+|..|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+.
T Consensus 3 G~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred ccccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 444443 3444556666655443 45888999999999999999999999999999999999999999987665
Q ss_pred ---hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 74 ---TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 74 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
.++|.++|++|...+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 83 ~~~l~~A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDK------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp CHHHHHHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 567778888887777 67788888888888888888888888888888878888888888888888888888
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT 217 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (487)
++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888777788888888777776653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-27 Score=224.44 Aligned_cols=410 Identities=10% Similarity=-0.043 Sum_probs=305.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+......+.+.|++++|+..|+++.+.. |+..++..++.++...|++++|+..++++.+.+ |.+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHH
Confidence 4456667777888888888888888887764 577777788888888888888888888877765 5566778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH----------------------
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM---------------------- 160 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------- 160 (487)
..++.++...|++++|...|+++...+ +++......++..+........+.+.+..+
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 888888888888888888888877764 233333333333333322222222222111
Q ss_pred -------------HHcCC---------CCChhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCC--------CC
Q 011362 161 -------------MDQGV---------QPNVVTFNVIMDELCK---NGKMDEASRLLDLMIQ-----HGV--------RP 202 (487)
Q Consensus 161 -------------~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~ 202 (487)
..... +.+...+......+.. .|++++|..+++.+.+ ... +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 00000 1113334444444444 8999999999999887 311 22
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV 282 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 282 (487)
+..++..+...+...|++++|...++.+.+... +...+..+..++...|++++|...++++...... +...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 356778888899999999999999999988752 2788888999999999999999999999886433 5677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 011362 283 GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362 (487)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (487)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998864 3456788888899999999999999999998765 5567888899999999999999
Q ss_pred HHHHHHhccCCCC-CCc----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011362 363 ALELFRSLPCGVL-VPN----VVTYSIMIGGLCN---DGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVI 434 (487)
Q Consensus 363 a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (487)
|...++++..... .++ ..++..++.++.. .|++++|...++++.+.. +.+..++..+..++...|++++|.
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 9999998875321 111 3378889999999 999999999999998763 336778888999999999999999
Q ss_pred HHHHHHHhcCCCCCHH
Q 011362 435 ELLHKMKEINVMPDAS 450 (487)
Q Consensus 435 ~~~~~~~~~~~~~~~~ 450 (487)
..++++.+.+ |+..
T Consensus 470 ~~~~~a~~~~--~~~~ 483 (514)
T 2gw1_A 470 TLFEESADLA--RTME 483 (514)
T ss_dssp HHHHHHHHHC--SSHH
T ss_pred HHHHHHHHhc--cccH
Confidence 9999999854 5543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-27 Score=221.83 Aligned_cols=401 Identities=10% Similarity=-0.017 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
...+...+..+.+.|++++|+..|+++.+.. |+...+..++.++...|++++|...++++.+.+ +.+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHH
Confidence 4567788899999999999999999999854 689999999999999999999999999998874 4477899
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH----------------------
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM---------------------- 195 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------- 195 (487)
..++.++...|++++|...|+++...+. ++......++..+........+.+.+..+
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 9999999999999999999999998754 34444444444333322222222222111
Q ss_pred -------------HHCCC---------CCCHHHHHHHHHHHHc---CCCHhHHHHHHHHHHH-----cCC--------CC
Q 011362 196 -------------IQHGV---------RPDAFTYNTLLDGFCL---TGRVNHAKELFVSMES-----MGC--------KH 237 (487)
Q Consensus 196 -------------~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~ 237 (487)
..... +.+...+......+.. .|++++|...++++.. ... +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 00000 1124444555555554 8999999999999987 311 23
Q ss_pred CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 011362 238 TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (487)
+...+..+...+...|++++|...++++....+. ...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 4567888899999999999999999999886544 7788889999999999999999999998864 446678889999
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (487)
.+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999876 5577889999999999999999999999988653 4456788999999999999999
Q ss_pred HHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccc
Q 011362 398 ARDLFLDMEENAVV-PN----VITFDMLIRGFIR---INEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSL 469 (487)
Q Consensus 398 A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 469 (487)
|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++.+++
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999764211 11 3378889999999 999999999999999865 456788889999999999997777
Q ss_pred ccccc
Q 011362 470 PSFTV 474 (487)
Q Consensus 470 ~~~~~ 474 (487)
+.+..
T Consensus 470 ~~~~~ 474 (514)
T 2gw1_A 470 TLFEE 474 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=2.2e-25 Score=207.37 Aligned_cols=329 Identities=12% Similarity=0.046 Sum_probs=191.3
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011362 6 HGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
.+...+..++... |.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|+..|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445566666654 4567888888889999999999999999888764 5567788888888899999999999999888
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV---VTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
+.+ |.+...+..++.+|...|++++|.+.|+++.+.. +.+. ..+..++..+...
T Consensus 88 ~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------------- 144 (450)
T 2y4t_A 88 QLK-------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ--------------- 144 (450)
T ss_dssp HHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH---------------
T ss_pred hcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH---------------
Confidence 865 5667888888888999999999999998888763 2233 4555443331100
Q ss_pred cCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH
Q 011362 163 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242 (487)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 242 (487)
.+..+...+...|++++|+.+|+.+.+.. +.+...+..++.++...|++++|...|+++.+.. +.+..++
T Consensus 145 --------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 214 (450)
T 2y4t_A 145 --------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAF 214 (450)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 11122223344444444444444444432 1234444444455555555555555555444432 3344445
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHN------------TLFVGLFEIHQVERAFKLFDEMQRNGVAAD-- 308 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 308 (487)
..++.+|...|++++|...++++....+. +...+. .+...+...|++++|...++++.+.. |+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~ 291 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIA 291 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Ccch
Confidence 55555555555555555555554432111 111221 12555666666666666666665532 22
Q ss_pred ---HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 309 ---TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 309 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
...+..++.++.+.|++++|...++.+.... +.+..++..++.+|...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2345556666666666666666666666543 445566666666666666666666666666653
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=2.5e-25 Score=211.90 Aligned_cols=402 Identities=11% Similarity=0.043 Sum_probs=304.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..++.++...|++++|++.|+++.+.+ |.+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHH
Confidence 4567778888889999999999999988875 5677788888888999999999999999888876 5677888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC------CCCChh------
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG------VQPNVV------ 170 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------ 170 (487)
..++.++...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+.... ..|+..
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 88888999999999999988643 22 1221 1222334444555567777777764421 111111
Q ss_pred ------------------------hHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCC-------HHHHHHHH
Q 011362 171 ------------------------TFNVIMDELCK--------NGKMDEASRLLDLMIQHGVRPD-------AFTYNTLL 211 (487)
Q Consensus 171 ------------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~ 211 (487)
....+...+.. .|++++|..+++.+.+.... + ..++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 11222222221 24788999999998876332 2 23566777
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHH
Q 011362 212 DGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVE 291 (487)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (487)
..+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++....+. +..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHH
Confidence 88889999999999999998874 45788899999999999999999999999886433 6778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 292 RAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998864 3456788889999999999999999999998875 6677889999999999999999999999876
Q ss_pred CCC-----CCCcHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011362 372 CGV-----LVPNVVTYSIMIGGLCND----------GQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 372 ~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
+.. .......+.....++... |++++|...|+++.+.. +.+...+..+..+|...|++++|.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 532 111222344556677777 99999999999998864 33678889999999999999999999
Q ss_pred HHHHHhcC
Q 011362 437 LHKMKEIN 444 (487)
Q Consensus 437 ~~~~~~~~ 444 (487)
++++.+..
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999865
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.4e-24 Score=200.38 Aligned_cols=371 Identities=11% Similarity=0.038 Sum_probs=290.6
Q ss_pred HHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011362 77 ALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRL 156 (487)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 156 (487)
+...+..+.... |.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|+..
T Consensus 11 ~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 11 VDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp -------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344444444443 6778899999999999999999999999998763 45788999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHcCCCHh
Q 011362 157 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA---FTYNTL------------LDGFCLTGRVN 221 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~ 221 (487)
|+++.+.++. +...+..+..+|...|++++|...|+.+.+.... +. ..+..+ ...+...|+++
T Consensus 83 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 83 LTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999987533 6778889999999999999999999999886322 33 455444 44588999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 222 HAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (487)
+|...++.+.+.. +.+...+..++.+|.+.|++++|...++++..... .+..++..+...+...|++++|...++++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998875 66788899999999999999999999999987533 367889999999999999999999999998
Q ss_pred HcCCCCcHHhHHHH------------HHHHHhCCCHhHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCCHHHHHH
Q 011362 302 RNGVAADTWTYRTF------------IDGLCKNGYIVEAVELFHTLRILKCEFD----IRAYNSLIDGLCKSGRLEIALE 365 (487)
Q Consensus 302 ~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~ 365 (487)
+.. +.+...+..+ +..+...|++++|...|+.+.... +.+ ..++..++.++.+.|++++|..
T Consensus 239 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 763 3344444444 788999999999999999998764 223 3478889999999999999999
Q ss_pred HHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----
Q 011362 366 LFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRG------------FIRIN----- 428 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g----- 428 (487)
.++++.+.. +.+..+|..++.+|...|++++|...++++.+... -+...+..+..+ |...|
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 999987653 45688999999999999999999999999998532 245666666533 33334
Q ss_pred ChhHHHHHHHHH-HhcCCCCC-----------HHHHHHHHHHHHhcccc
Q 011362 429 EPSKVIELLHKM-KEINVMPD-----------ASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 429 ~~~~a~~~~~~~-~~~~~~~~-----------~~~~~~l~~~~~~~g~~ 465 (487)
+.+++.+.++++ +. ..|| ...+..+..++...|+-
T Consensus 395 ~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp CTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred CHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 567778888874 33 2233 12566666777666654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=5e-25 Score=209.85 Aligned_cols=389 Identities=11% Similarity=0.034 Sum_probs=303.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++... |.++.+|..++.+|...|++++|++.|+++.+.+ +.+..++..++.++...|++++|+..
T Consensus 38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999999986 5589999999999999999999999999999886 56788899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHh-------------------
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN------IKPNVV------------------- 135 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------------------- 135 (487)
|+ ..... |+ .....+..+...+....|...++.+.... ..|+..
T Consensus 116 ~~-~~~~~--------~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 116 LS-VLSLN--------GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HH-HHC---------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HH-HHhcC--------CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 97 44332 11 11222334445555677888887775431 111111
Q ss_pred -----------hHHHHHHHHHh--------cCChhhHHHHHHHHHHcCCCCC-------hhhHHHHHHHHHhCCChHHHH
Q 011362 136 -----------TYTSVIRGFCY--------AKDWNEAKRLFIEMMDQGVQPN-------VVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 136 -----------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~ 189 (487)
....+...+.. .+++++|..+++++.+..+. + ...+..+...+...|++++|.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 12222222222 24789999999998875332 2 224666777888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 269 (487)
..++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999986 4558889999999999999999999999998875 5678889999999999999999999999998864
Q ss_pred CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-----CCh
Q 011362 270 IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCE-----FDI 344 (487)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 344 (487)
+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... ...
T Consensus 341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 33 56788889999999999999999999998874 455678889999999999999999999998754311 112
Q ss_pred HhHHHHHHHHHhc----------CCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 345 RAYNSLIDGLCKS----------GRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 345 ~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
..+......+... |++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2244555677777 99999999999998753 4567889999999999999999999999999853
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1.2e-21 Score=176.27 Aligned_cols=332 Identities=10% Similarity=0.014 Sum_probs=207.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..++++.+.. |.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcchH
Confidence 45667888888999999999999999988875 5567788888899999999999999999988865 556788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHhhHHHH------------HHHHHhcCChhhHHHHHHHHHHcCCCC
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIK--PNVVTYTSV------------IRGFCYAKDWNEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (487)
+..++.++...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++++.+..+ .
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-W 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence 888999999999999999999988876310 234444444 3445555555555555555554422 2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILIN 247 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (487)
+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 34444555555555555555555555555442 2244455555555555555555555555554432 112221111100
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHHhCC
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT----WTYRTFIDGLCKNG 323 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 323 (487)
. . .......+...+...|++++|...++++.+... .+. ..+..+..++...|
T Consensus 231 ~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 231 V-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp H-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTT
T ss_pred H-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHcc
Confidence 0 0 000112234556677777777777777766432 122 22445666777777
Q ss_pred CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
++++|...++.+.+.. +.++.++..+...+...|++++|...|+++.+.. +.+...+..+..+..
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 7777777777777654 4566777777777777788888888887777653 333455555555544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.9e-21 Score=174.95 Aligned_cols=335 Identities=10% Similarity=-0.002 Sum_probs=229.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
++..+..++..+...|++++|+..|+++.+.. |.+...+..++.++...|++++|...++++.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 34567778888888899999999998888765 5667888888888888899999999888887763 336678
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGF 214 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (487)
+..+..++...|++++|...++++.+.... .+...+..+...+. ...+..+...+
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~ 130 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDA 130 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 888888888888888888888888775320 12333333311100 01122234455
Q ss_pred HcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHH
Q 011362 215 CLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAF 294 (487)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (487)
...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++....+ .+...+..+...+...|++++|.
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 55566666666666555543 34455555556666666666666666666555422 24455555566666666666666
Q ss_pred HHHHHHHHcCCCCcHHh------------HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcC
Q 011362 295 KLFDEMQRNGVAADTWT------------YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDI----RAYNSLIDGLCKSG 358 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 358 (487)
..++.+.+.. +.+... ...+...+...|++++|...++.+.... +.+. ..+..+..++...|
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 209 SEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHcc
Confidence 6666655542 122222 2234667899999999999999998765 3333 23556788999999
Q ss_pred CHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011362 359 RLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (487)
++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+... .+...+..+..+....+
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRLLK 354 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHH
Confidence 9999999999998753 45788999999999999999999999999998642 24666777777665543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=8.6e-20 Score=171.03 Aligned_cols=363 Identities=14% Similarity=0.033 Sum_probs=232.5
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHH
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCA----ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVALN 79 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 79 (487)
+..+....+.| ++.++..+...|.. .+++++|+.+|++..+.| +...+..+...|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455544432 56666666777766 677777777777776643 45566666777766 677777777
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChh
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWN 151 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 151 (487)
+|++..+.+ ++..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++++
T Consensus 101 ~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 101 WYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 777776543 45566666666666 667777777777776654 45566666666665 56777
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHhHH
Q 011362 152 EAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHA 223 (487)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 223 (487)
+|++.|++..+.+ +...+..+...|.. .+++++|..+|+...+.+ +...+..+...+.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7777777776653 45566666666666 677777777777766653 44555566666654 6677777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc-----CCHHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI-----HQVERAF 294 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~ 294 (487)
..+|++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+...+... +++++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 77777766543 34455556666665 667777777777766543 334555555666555 6777777
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHhCC---CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHH
Q 011362 295 KLFDEMQRNGVAADTWTYRTFIDGLCKNG---YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK----SGRLEIALELF 367 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 367 (487)
..+++..+.+ +...+..+...|...| ++++|..+|++..+.+ ++..+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 7777766653 3345555666665545 5667777777766543 45566666666666 66777777777
Q ss_pred HhccCCCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 011362 368 RSLPCGVLVPNVVTYSIMIGGLCN----DGQMDKARDLFLDMEENA 409 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 409 (487)
++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 7766543 45566666666665 667777777777776654
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=5e-19 Score=165.83 Aligned_cols=366 Identities=11% Similarity=0.016 Sum_probs=309.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----c
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----E 112 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 112 (487)
.+...++...+ ..++..+..+...|.. .+++++|+.+|++..+.+ ++..+..|...|.. .
T Consensus 25 ~~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~ 92 (490)
T 2xm6_A 25 VNLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVP 92 (490)
T ss_dssp CCHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCC
Confidence 34566666655 3477888888888888 899999999999998754 56788889999998 8
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----CCC
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGK 184 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 184 (487)
+++++|.++|++..+.| +...+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999998875 66788889999988 789999999999998875 56677788888887 789
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCCHh
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK----NKEIE 256 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 256 (487)
+++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998874 67788888888887 899999999999998865 56678888888886 88999
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhC-----CCHhH
Q 011362 257 GALSLYSEMLSKGIKPDVVIHNTLFVGLFE----IHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKN-----GYIVE 327 (487)
Q Consensus 257 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ 327 (487)
+|..+|++..+.+ +...+..+...+.. .++.++|...|++..+.+ +...+..+...|... +++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 9999999998864 45566777777777 899999999999998764 456777788888877 89999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc----cCCHHHHHH
Q 011362 328 AVELFHTLRILKCEFDIRAYNSLIDGLCKSG---RLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN----DGQMDKARD 400 (487)
Q Consensus 328 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 400 (487)
|...+++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|.. .+++++|..
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999998865 4567778888887766 7899999999998753 67788889999988 899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 011362 401 LFLDMEENAVVPNVITFDMLIRGFIR----INEPSKVIELLHKMKEINV 445 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 445 (487)
.|++..+.+ +...+..+...|.. .+++++|...|++..+.+.
T Consensus 389 ~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 389 WMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999865 57778888888988 8999999999999998763
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=7.8e-20 Score=173.11 Aligned_cols=418 Identities=10% Similarity=0.007 Sum_probs=305.0
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 10 VLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
+|++.++.. |.+..+|..++. +.+.|++++|..+|+++++.. |.+...|...+..+.+.|++++|..+|+++....
T Consensus 1 ~le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 1 MAEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp CHHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred ChhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 367777775 558999999998 478999999999999999874 5677889999999999999999999999999864
Q ss_pred CCccccccchHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCC-CCHhhHHHHHHHHHh---------cCChhhH
Q 011362 90 EFGVVCEPNTVTYTTIIDGL-CKEGFVDKAKE----LLLQMKDK-NIK-PNVVTYTSVIRGFCY---------AKDWNEA 153 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a 153 (487)
|+...|..++... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|
T Consensus 77 -------p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 77 -------LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp -------CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred -------CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 5777888877543 45677777665 77766543 433 356678777776654 6889999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHH-------------HhCCChHHHHHHHHHHH------HCC---CCCC--------
Q 011362 154 KRLFIEMMDQGVQPNVVTFNVIMDEL-------------CKNGKMDEASRLLDLMI------QHG---VRPD-------- 203 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~-------- 203 (487)
..+|++.++....+....|....... ...+++..|..++.... +.. ++|+
T Consensus 150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 99999998731111122333222211 12345667777666532 211 2333
Q ss_pred HHHHHHHHHHHHcC----CCH----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-------cCCHh-------HHHHH
Q 011362 204 AFTYNTLLDGFCLT----GRV----NHAKELFVSMESMGCKHTVFSYSILINGYCK-------NKEIE-------GALSL 261 (487)
Q Consensus 204 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~ 261 (487)
...|...+...... ++. .++..+|+++.... |.++..|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 24555544333221 232 36778888887763 6678888888888875 78877 89999
Q ss_pred HHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-H-HhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 262 YSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD-T-WTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
+++....-.+.+...+..++..+...|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+..
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 999986323346778888899999999999999999999985 443 2 478888888888999999999999998753
Q ss_pred CCCChHhHHHHHHH-HHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC--HH
Q 011362 340 CEFDIRAYNSLIDG-LCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV-VPN--VI 415 (487)
Q Consensus 340 ~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~ 415 (487)
+.+...+...+.. +...|++++|..+|+...+.. +.+...|..++..+...|+.++|..+|+++...+. .|+ ..
T Consensus 387 -~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 387 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 3333444333322 346899999999999888752 44678899999999999999999999999988632 232 45
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 416 TFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
.|..++......|+.+.+..+.+++.+.
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888899999999999999864
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=6.8e-21 Score=169.25 Aligned_cols=271 Identities=11% Similarity=-0.004 Sum_probs=185.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.+...+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. |.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCH
Confidence 4566777778888888888888888888888765 4455566677778888888888888888888765 5667
Q ss_pred HHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011362 100 VTYTTIIDGLCKEG-FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 178 (487)
Q Consensus 100 ~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (487)
..+..+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.... +...+..+...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 168 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 78888888888888 8888888888887764 335677888888888888888888888888776433 44556667777
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC--------CCCCHhhHHHHHHHHH
Q 011362 179 LCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG--------CKHTVFSYSILINGYC 250 (487)
Q Consensus 179 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 250 (487)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..++.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 778888888888888777653 2356667777777777777777777777665431 0222344555555555
Q ss_pred ccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011362 251 KNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
..|++++|...+++....... +...+..+...+...|++++|...++++.+
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 555555555555555543221 333444444444455555555555544444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.5e-20 Score=163.94 Aligned_cols=287 Identities=14% Similarity=0.036 Sum_probs=187.4
Q ss_pred ccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 011362 96 EPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+... .+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 4455666777777777788888888887777653 33555666677777777888888888777776532 255666677
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 011362 176 MDELCKNG-KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE 254 (487)
Q Consensus 176 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (487)
...+...| ++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777777 77777777777776532 245667777777777777777777777776654 3345556667777777777
Q ss_pred HhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCcHHhHHHHHHHHHhCCCHh
Q 011362 255 IEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG--------VAADTWTYRTFIDGLCKNGYIV 326 (487)
Q Consensus 255 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~ 326 (487)
+++|...++++....+ .+...+..+...+...|++++|...++++.+.. .+....++..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777766533 245566666677777777777777776665531 0222345666666666666666
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH
Q 011362 327 EAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL 389 (487)
Q Consensus 327 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (487)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666666666554 4455566666666666666666666666666542 33445555555555
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=9.1e-19 Score=165.77 Aligned_cols=397 Identities=10% Similarity=-0.003 Sum_probs=290.5
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG-LCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 79 (487)
.|++++|+.+|++++... |.+...|..++..+.+.|++++|..+|++++.. .|+...|...+.. ....|+.+.|.+
T Consensus 25 ~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHH
Confidence 378999999999999985 668889999999999999999999999999987 4677777777653 345677777665
Q ss_pred ----HHHHHHhCCCCCccccccchHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH--
Q 011362 80 ----LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK---------EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF-- 144 (487)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 144 (487)
+|+.....-+. -+++...|...+....+ .|+++.|..+|++..+....+....|.......
T Consensus 102 ~~~~~~~~al~~~g~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 102 KMAQAYDFALDKIGM----EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHHTTT----STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 77776653210 13457788888877655 688999999999998831111123443322211
Q ss_pred -----------HhcCChhhHHHHHHHHH------HcC---CCCC--------hhhHHHHHHHHHhC----CCh----HHH
Q 011362 145 -----------CYAKDWNEAKRLFIEMM------DQG---VQPN--------VVTFNVIMDELCKN----GKM----DEA 188 (487)
Q Consensus 145 -----------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a 188 (487)
...+++..|..++.... +.. ++|+ ...|...+...... ++. .++
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 13456677777776532 111 2333 13444444332221 232 377
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHc-------CCCHh-------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 011362 189 SRLLDLMIQHGVRPDAFTYNTLLDGFCL-------TGRVN-------HAKELFVSMESMGCKHTVFSYSILINGYCKNKE 254 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (487)
..+|++++... +.+...|..++..+.+ .|+++ +|..++++..+.-.|.+...|..++..+.+.|+
T Consensus 258 ~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 78898888763 3478888888888775 78887 899999999863236678889999999999999
Q ss_pred HhHHHHHHHHHHHCCCccCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH-HHhCCCHhHHHHHH
Q 011362 255 IEGALSLYSEMLSKGIKPDV-VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDG-LCKNGYIVEAVELF 332 (487)
Q Consensus 255 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~ 332 (487)
+++|..+|++++...+. +. ..|..++..+.+.|+.++|..+|++..+.. +.+...+...+.. +...|+.++|..+|
T Consensus 337 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 99999999999985322 32 478888888889999999999999998863 2233333332222 34689999999999
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 333 HTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV-LVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
+...+.. +.++..|..++..+.+.|+.++|..+|+++...+ ..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 415 e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 415 ELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998764 5678899999999999999999999999988653 1232 347888888888899999999999999874
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=7e-21 Score=171.99 Aligned_cols=294 Identities=13% Similarity=0.014 Sum_probs=226.1
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCC-C--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 32 GLCAESRIMEAAA-LFTKLRVFGCE-P--DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 32 ~~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
++...|++++|++ .|++....... | +...+..++..+...|++++|+..|+++.+.. |.+...+..++.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~ 106 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGT 106 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 4455688999998 88876654311 1 34567788889999999999999999998876 667888899999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH-H------------
Q 011362 108 GLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFN-V------------ 174 (487)
Q Consensus 108 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~------------ 174 (487)
++...|++++|...|+++.+.. +.+..++..++.++...|++++|...++++...... +...+. .
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------
T ss_pred HHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHH
Confidence 9999999999999999988764 447788888999999999999999999998886433 222221 1
Q ss_pred --HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 011362 175 --IMDELCKNGKMDEASRLLDLMIQHGVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK 251 (487)
Q Consensus 175 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 251 (487)
.+..+...|++++|...++.+.+..... +..++..+...+...|++++|...++++.... +.+...+..+..++..
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN 263 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 2333448899999999999998764322 57888999999999999999999999988775 5667889999999999
Q ss_pred cCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------cHHhHHHHHHHHHh
Q 011362 252 NKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAA----------DTWTYRTFIDGLCK 321 (487)
Q Consensus 252 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~ 321 (487)
.|++++|...++++....+ .+...+..+...+...|++++|...++++.+..... ...++..+..++..
T Consensus 264 ~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 9999999999999887643 366788889999999999999999999887642111 15788999999999
Q ss_pred CCCHhHHHHHHHHHH
Q 011362 322 NGYIVEAVELFHTLR 336 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~ 336 (487)
.|++++|..++.+..
T Consensus 343 ~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 343 LGQSDAYGAADARDL 357 (368)
T ss_dssp HTCGGGHHHHHTTCH
T ss_pred hCChHhHHHhHHHHH
Confidence 999999998887544
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.9e-20 Score=169.15 Aligned_cols=289 Identities=11% Similarity=-0.012 Sum_probs=193.7
Q ss_pred cCChhhHHH-HHHHHHHcCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH
Q 011362 147 AKDWNEAKR-LFIEMMDQGVQ---PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 222 (487)
Q Consensus 147 ~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (487)
.|++++|.. .+++....... .+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 466666666 66654433211 124456666777777777777777777777653 2356667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHH---------------HHHHHHhc
Q 011362 223 AKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNT---------------LFVGLFEI 287 (487)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 287 (487)
|...++++.+.. +.+..++..+..+|...|++++|...++++....+. +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777776664 456667777777777777777777777777765332 1111110 12333377
Q ss_pred CCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 011362 288 HQVERAFKLFDEMQRNGVAA-DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALEL 366 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (487)
|++++|...+.++.+..... +..++..+...+...|++++|...++++.... +.+..++..++..+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887753221 46777788888888888888888888887764 55677788888888888888888888
Q ss_pred HHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCChhHHHHH
Q 011362 367 FRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP----------NVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
++++.+.. +.+..++..+..+|...|++++|...|+++.+..... ...+|..+..++...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 88877643 4456778888888888888888888888876532111 156778888888888888888877
Q ss_pred HHHH
Q 011362 437 LHKM 440 (487)
Q Consensus 437 ~~~~ 440 (487)
+++.
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7644
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=4e-18 Score=159.39 Aligned_cols=391 Identities=9% Similarity=-0.109 Sum_probs=252.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVF--------GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFG 92 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 92 (487)
.....|+.|...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...++++.+..+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34677999999999999999999999997653 1123456788999999999999999999998765321110
Q ss_pred cc-cccchHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH---HhcCChhhHHHHHHHHHHcCCC
Q 011362 93 VV-CEPNTVTYTTIIDGLCKE--GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF---CYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 93 ~~-~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
.. .+....++..+..++... +++++|++.|++..+.. |-++..+..+..++ ...++.++|++.+++..+..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 00 122356677666666554 57899999999998864 23555666555553 4567888999999998876433
Q ss_pred CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH
Q 011362 167 PNVVTFNVIMDELCK----NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242 (487)
Q Consensus 167 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 242 (487)
+...+..+...+.. .+++++|.++++...... +.+..++..+...+...|++++|...++++.+.. |.+..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 45555555554443 467789999999888764 3467888899999999999999999999998875 5566777
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhC
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKN 322 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (487)
..+..+|...+.... ... ...........+..+.|...+....+.. +.+...+..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 777766643211111 100 0000111112334577888888877753 34556777888888999
Q ss_pred CCHhHHHHHHHHHHHcCCCCChH--hHHHHHH-HHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHH
Q 011362 323 GYIVEAVELFHTLRILKCEFDIR--AYNSLID-GLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKAR 399 (487)
Q Consensus 323 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 399 (487)
|++++|...|++.......+... .+..+.. .+...|++++|+..|++..+. .|+...... ....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 99999999998888765332221 2223332 234678899999999888764 344332221 234455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 400 DLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
+++++..... +.+..+|..+..+|...|++++|.+.|+++++.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5666666543 3367788889999999999999999999998764
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=1.5e-19 Score=162.94 Aligned_cols=267 Identities=9% Similarity=-0.047 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
...+..++..+.+.|++++|+..|+++.+.. |.+..++..++.++...|++++|+..|+++.+.. +.+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3345555666666666666666666666544 4455566666666666666666666666665542 2245556
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHH
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQGVQP---------NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR-PDAFTY 207 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 207 (487)
..++.+|...|++++|...++++.+..... ....+..+...+...|++++|..+++.+.+.... .+..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 666666666666666666666665532110 0111223355666666666666666666654321 145566
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc
Q 011362 208 NTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI 287 (487)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (487)
..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++....+. +..++..+..++...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHC
Confidence 666666666666666666666666553 445566666666666666666666666666654222 355566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCC-----------CcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 011362 288 HQVERAFKLFDEMQRNGVA-----------ADTWTYRTFIDGLCKNGYIVEAVELFHT 334 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 334 (487)
|++++|...++++.+.... .+...+..+..++...|+.+.+..+...
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 6666666666666543110 1245667777777777777777666554
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=2e-19 Score=158.21 Aligned_cols=378 Identities=12% Similarity=0.088 Sum_probs=168.5
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|.+.++++- ++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+..
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 367899999999882 335899999999999999999999965 35777899999999999999999998
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 84 l~~ark~--------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 84 LQMARKK--------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHh--------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 8877763 3457788899999999999999888774 367779999999999999999999999976
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHh
Confidence 46999999999999999999999988 27899999999999999999996655432 23444
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------cHHhHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN-GVAA------DTWTYR 313 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~ 313 (487)
....++..|.+.|.+++|..+++..+... +.....|..+..+|++- ++++..+.++...+. +++| +...|.
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 46678899999999999999999988764 33556677776666543 334443333322221 1222 346778
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcC-----------CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHH
Q 011362 314 TFIDGLCKNGYIVEAVELFHTLRILK-----------CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTY 382 (487)
Q Consensus 314 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 382 (487)
.++..|...++++.|....-.-.... ...+...|-..+..|... .+..-..++.-+.. ..| .
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l~~---~ld---~ 359 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVLSP---RLD---H 359 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGG---GCC---H
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHh---ccC---c
Confidence 88888889999998876443321110 022344444444444411 11111111111110 001 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011362 383 SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELL 437 (487)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (487)
+..+..+.+.|++.-+..++..+...+ +...=.++-..|...+|++.-+...
T Consensus 360 ~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 360 TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 233444555666666666665555432 3333345555666777766544433
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=4.4e-20 Score=166.49 Aligned_cols=267 Identities=12% Similarity=-0.010 Sum_probs=176.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILING 248 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (487)
...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666677777777777777777776653 2356677777777777777777777777776654 4456677777777
Q ss_pred HHccCCHhHHHHHHHHHHHCCCcc---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHhHHHHHHH
Q 011362 249 YCKNKEIEGALSLYSEMLSKGIKP---------DVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA-ADTWTYRTFIDG 318 (487)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 318 (487)
|...|++++|...++++....+.. ....+..+...+...|++++|...++++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777777776642110 0112233466677777888888888777775321 156677777777
Q ss_pred HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHH
Q 011362 319 LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKA 398 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (487)
+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888877664 5567777788888888888888888887776642 34467777778888888888888
Q ss_pred HHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 399 RDLFLDMEENAVV-----------PNVITFDMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 399 ~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
...|+++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888877653111 0245677777777788887777666554
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=6.3e-18 Score=158.01 Aligned_cols=389 Identities=11% Similarity=-0.065 Sum_probs=256.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-c-cccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 011362 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEF-G-VVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----- 128 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 128 (487)
.....|+.+..++...|++++|++.|++..+..+.. + ...+....+|..+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345678999999999999999999999876521000 0 001334678999999999999999999999887642
Q ss_pred C--CCCCHhhHHHHHHHHHh--cCChhhHHHHHHHHHHcCCCCChhhHHHHHHH---HHhCCChHHHHHHHHHHHHCCCC
Q 011362 129 N--IKPNVVTYTSVIRGFCY--AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE---LCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 129 ~--~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
+ ......++..+..++.. .+++++|+..|++..+..+. ++..+..+..+ +...++.++|++.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11234566666655554 45799999999999886433 44455444444 4456788889999988887633
Q ss_pred CCHHHHHHHHHHHH----cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhH
Q 011362 202 PDAFTYNTLLDGFC----LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIH 277 (487)
Q Consensus 202 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 277 (487)
.+...+..+...+. ..+++++|.+.+++..... +.+...+..+...|...|++++|...+.+..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 35566665555444 4467889999999988775 667788899999999999999999999999876432 45555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS 357 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (487)
..+...|...+... .... .. .........+..+.|...++...... +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 55555543221111 1100 00 00111112234678999999988776 56777889999999999
Q ss_pred CCHHHHHHHHHhccCCCCCCcH--HHHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011362 358 GRLEIALELFRSLPCGVLVPNV--VTYSIMIG-GLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVI 434 (487)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (487)
|++++|...|+++.+....|.. ..+..+.. .....|++++|+..|++.++. .|+...... ....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 9999999999998875433222 12333333 345789999999999999984 455432222 223455
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccchh
Q 011362 435 ELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVHEQ 477 (487)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 477 (487)
+++++.+..+ +.+..++..++.++...|++++|++.|...-+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777655 56778999999999999999999988876554
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=7.1e-19 Score=155.96 Aligned_cols=233 Identities=10% Similarity=-0.011 Sum_probs=138.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...+..++..+...|++++|+.+|+++.+.. +.+..++..++..+...|++++|...++++.+.. |.+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHH
Confidence 34556777888888889999998888888764 4567778888888888888888888888888765 556778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH--------------HH-HHHhcCChhhHHHHHHHHHHcCCC
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV--------------IR-GFCYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
+..++.++...|++++|.+.++++..... .+...+..+ .. .+...|++++|...++++.+....
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 170 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN 170 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888877532 233333332 11 244445555555555555544221
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 011362 167 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILI 246 (487)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 246 (487)
+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 171 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 171 -DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 34444445555555555555555555544432 1234444444444555555555555554444432 22334444444
Q ss_pred HHHHccCCHhHHHHHHHHHH
Q 011362 247 NGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~ 266 (487)
.++...|++++|...++++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=8.1e-19 Score=155.61 Aligned_cols=263 Identities=12% Similarity=-0.040 Sum_probs=163.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 011362 173 NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN 252 (487)
Q Consensus 173 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (487)
..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444443321 133444444444444444444444444444432 33344444455555555
Q ss_pred CCHhHHHHHHHHHHHCCCccChhhHHH-------------H-HH-HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 011362 253 KEIEGALSLYSEMLSKGIKPDVVIHNT-------------L-FV-GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 253 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (487)
|++++|...++++...... +...+.. + .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555555443211 1111111 1 22 2667778888888888887764 346677788888
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (487)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 8888888888888888887765 5567778888888888888888888888877643 4456778888888888888888
Q ss_pred HHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 398 ARDLFLDMEENAVVP-----------NVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 398 A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
|...++++.+..... +...|..+..++...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888888887643221 36677788888888888888888876544
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1.3e-16 Score=156.95 Aligned_cols=388 Identities=11% Similarity=0.083 Sum_probs=274.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC--EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+.--...+++|...|.+.+|+++++++...+- ..+...-+.++....+. +..+..++.++....
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------------- 1050 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------------- 1050 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------------
Confidence 33345567788888888888888888874321 02233444566555555 445555555554421
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
....+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL 1116 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH
Confidence 123367778888899999999888531 2233333332 6778888888887652 4677888999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHH
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALS 260 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 260 (487)
..|++++|+..|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|.+.++++....
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999998653 367788888999999999999999998877664 333344468888888888875443
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 011362 261 LYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (487)
+. . .++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 32 2 245566777888888999999999998875 36888888999999999999998876
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDML 420 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (487)
.+..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....|+.+
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 35678888888888899988888876643 2356667788889999999999999998887643 2244566666
Q ss_pred HHHHHhc--CChhHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcccccccccccccch
Q 011362 421 IRGFIRI--NEPSKVIELLHKMKEINVMP------DASIVSIVVDLLAKNEISLNSLPSFTVHE 476 (487)
Q Consensus 421 ~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 476 (487)
...|.+. ++..++.+.|..-. ++++ +...|..+...|.+.|.+..|+..+-.++
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 6666654 34444555544332 2333 46778888889999999988886665554
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=5.1e-19 Score=155.72 Aligned_cols=373 Identities=12% Similarity=0.057 Sum_probs=179.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
.+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. ++...|..++.++...|
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCC
Confidence 36688999999999972 2348999999999999999999999652 45678999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 193 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 193 (487)
++++|+..++..++. .+++.+...++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877764 3457788889999999999999988875 3677799999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC
Q 011362 194 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 273 (487)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 273 (487)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 76 47889999999999999999999888 267899999999999999999966555422 23
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH-HcCCCC------ChHh
Q 011362 274 VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLR-ILKCEF------DIRA 346 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~ 346 (487)
+.-...++..|.+.|.+++|..+++...... +.....|+.+..+|++- .+++..+.++... ..++++ +...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445568888999999999999999998765 55677888887777764 3444433333322 223333 4667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC-----------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGV-----------LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVI 415 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 415 (487)
|..+...|...++++.|....-+-.... ...+...|...+..|.. ....++.-+-......+ |.
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~l--d~- 359 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRL--DH- 359 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGC--CH-
T ss_pred HHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcc--Cc-
Confidence 8899999999999998877654433210 13456666666666662 22233333333332112 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 416 TFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
...+..+.+.|+..-+...++..... ....+-.++-+.|...+++
T Consensus 360 --~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~ 404 (449)
T 1b89_A 360 --TRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDY 404 (449)
T ss_dssp --HHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCH
T ss_pred --HHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhH
Confidence 34556667788877777777776653 3455555666666666666
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1e-15 Score=150.63 Aligned_cols=395 Identities=12% Similarity=0.102 Sum_probs=292.4
Q ss_pred CCccchHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
+|.+.+|+++|+.++-.+. ..+....+.++.+..+. +..+..++.+++... + ...+...+...|.+++|.
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAF 1069 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHH
Confidence 4889999999999994421 13456667788777777 567777777666522 1 334778888999999999
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
.+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1070 ~IYkKa~~-----------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1070 AIFRKFDV-----------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHcCC-----------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999632 2333344443 6688999999988652 57789999999999999999999997
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 238 (487)
+. -+...|..++.++.+.|++++|.++|....+.. +++...+.++.+|++.+++++...+. + .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 64 377788889999999999999999999887764 34334445888999999888544432 2 345
Q ss_pred HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 011362 239 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDG 318 (487)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (487)
...+..+...|...|++++|..+|... ..|..++.++.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 667778999999999999999999885 37889999999999999999998876 345788888889
Q ss_pred HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc--CCHH
Q 011362 319 LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND--GQMD 396 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 396 (487)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-+...|..+...|++. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 99999999988876642 4566777889999999999999999998887654 44556776777766654 3455
Q ss_pred HHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCChhHHHHHH-------------HHHHhcCCCCCHHHHHHHHH
Q 011362 397 KARDLFLDMEENAVVP------NVITFDMLIRGFIRINEPSKVIELL-------------HKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 397 ~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~-------------~~~~~~~~~~~~~~~~~l~~ 457 (487)
++.++|..-.. ++| +...|..++-.|.+.|+++.|...+ +.... ...+..+|...+.
T Consensus 1334 Ehlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~ 1409 (1630)
T 1xi4_A 1334 EHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHH
Confidence 55555543322 222 4567888888899999999887322 22111 2445666666666
Q ss_pred HHHhcc
Q 011362 458 LLAKNE 463 (487)
Q Consensus 458 ~~~~~g 463 (487)
-|-...
T Consensus 1410 Fyl~~~ 1415 (1630)
T 1xi4_A 1410 FYLEFK 1415 (1630)
T ss_pred HHHhhC
Confidence 555444
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=4.9e-18 Score=146.64 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=157.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDV--FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
++.....|+++.|+..+++.... .|+. .....+.++|...|+++.|+..++. .. +|+..++..+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~-------~~~~~a~~~la~ 73 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS-------APELQAVRMFAE 73 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC-------ChhHHHHHHHHH
Confidence 34556677777777777665443 2332 3445566777777777777765543 12 456667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChH
Q 011362 108 GLCKEGFVDKAKELLLQMKDKNI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 186 (487)
Q Consensus 108 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (487)
.+...|+.++|++.++++...+. +-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|+++
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHH
Confidence 77777777777777777766543 33455566666777777777777777765 345666666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHH
Q 011362 187 EASRLLDLMIQHGVRPDAFT---YNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYS 263 (487)
Q Consensus 187 ~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 263 (487)
+|.+.++.+.+.. |+... ...++..+...|++++|..+|+++.+.. |.+...++.+..++.+.|++++|...++
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777776653 33211 1122233344566777777777766653 5566666667777777777777777777
Q ss_pred HHHHCCCccChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011362 264 EMLSKGIKPDVVIHNTLFVGLFEIHQVER-AFKLFDEMQRN 303 (487)
Q Consensus 264 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 303 (487)
+++...+. +..++..++..+...|+.++ +..+++++.+.
T Consensus 225 ~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 225 EALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 76664322 45556666666666666644 45666666554
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=3.7e-18 Score=147.45 Aligned_cols=250 Identities=12% Similarity=0.022 Sum_probs=205.9
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++..|+..++.+....+.+.......+.++|...|+++.|+..++.. .+|+..++..+...+...++.++|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4899999999988766542222346667889999999999999877552 366777888999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++++...+. .|.+...+..+..++...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|+++
T Consensus 88 l~~ll~~~~-----~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 88 LDREMSRSV-----DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHSCC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999886531 145677888889999999999999999987 457889999999999999999999999999
Q ss_pred HHcCCCCChhhH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC
Q 011362 161 MDQGVQPNVVTF---NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH 237 (487)
Q Consensus 161 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (487)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++.... |.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 8874 443211 12334445668999999999999987 45588999999999999999999999999998876 67
Q ss_pred CHhhHHHHHHHHHccCCHhH-HHHHHHHHHHCC
Q 011362 238 TVFSYSILINGYCKNKEIEG-ALSLYSEMLSKG 269 (487)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 269 (487)
++.++..++..+...|+.++ +.++++++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 88899999999999999876 678999988753
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.80 E-value=2.8e-17 Score=151.49 Aligned_cols=378 Identities=10% Similarity=-0.031 Sum_probs=241.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT---IVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+...+.+.|++++|+++|+++.+.| +...+..+...|...|+. ++|+.+|++..+ . ++..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~---------~-~~~A~~~ 74 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD---------T-SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------------CHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---------C-CHHHHHH
Confidence 36777888999999999999998765 334455666777778888 899999988875 2 5667777
Q ss_pred HHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 105 IIDGLCKEG-----FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW---NEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 105 l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
+...+...+ ++++|+.+|++..+.|. ...+..|...|...+.. .++.+.+......| +......+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777566655 77899999999988763 33677788887766554 34555555555544 345666777
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-
Q 011362 177 DELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVSMESMGCKHTVFSYSILINGYCKN- 252 (487)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 252 (487)
..|...+.++++......+.+.-...++..+..+...|...| +.++|...|++..+.| +++...+..+..+|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 778777755544444333222211223347778888888888 8899999999988887 55666557777777654
Q ss_pred ---CCHhHHHHHHHHHHHCCCccChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCC---
Q 011362 253 ---KEIEGALSLYSEMLSKGIKPDVVIHNTLFVG-L--FEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNG--- 323 (487)
Q Consensus 253 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 323 (487)
+++++|...|++.. +-++..+..+... + ...+++++|...|++..+.| +......+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 78999999999887 2355666666666 4 46889999999999988865 5666777777776 44
Q ss_pred --CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc----cC
Q 011362 324 --YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN----DG 393 (487)
Q Consensus 324 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 393 (487)
++++|..+|++.. +-++.....|...|.. ..++++|...|++..+.| +......+...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 8999999998887 3466777777777766 348999999999988765 34455666666664 45
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
++.+|...|+...+.|.. +.......+......++..+|.++.++-.
T Consensus 373 d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 888999999988887632 22222122221222234455555555543
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.80 E-value=3.6e-17 Score=150.77 Aligned_cols=370 Identities=9% Similarity=-0.032 Sum_probs=250.5
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-----C
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRI---MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-----H 73 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~ 73 (487)
|++++|++.|+++.+.| ++.++..|...|...|++ ++|+.+|++..+. ++..+..+...+...+ +
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence 68899999999999876 445556677778888888 9999999998853 5566777777555555 7
Q ss_pred hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 74 TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD---KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
+++|+.+|++..+.+ + ...+..|...|...+..+ .+.+.+......| +...+..+...|...+.+
T Consensus 90 ~~~A~~~~~~Aa~~g-------~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 90 HHEAESLLKKAFANG-------E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HHHHHHHHHHHHHTT-------C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHCC-------C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 889999999999866 2 337777888887766543 4555565555544 456777888888888877
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----CCHhHH
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG---KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT----GRVNHA 223 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a 223 (487)
+++......+.+.-...++..+..+...|...| +.++|+..|+...+.|.. +...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 666665444433322334457888999999999 899999999999988644 566556677777655 799999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHH-H--HccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcC-----CHHHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSILING-Y--CKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIH-----QVERAFK 295 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~ 295 (487)
...|++.. . -++..+..+..+ + ...+++++|...|++..+.| +......+...|. .| ++++|..
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999987 3 456677777776 4 56899999999999999875 5566777777776 55 9999999
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHH
Q 011362 296 LFDEMQRNGVAADTWTYRTFIDGLCK----NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK----SGRLEIALELF 367 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 367 (487)
.|++.. . .+......+...|.. ..++++|..+|++..+.+ ++.....|...|.. ..++.+|...|
T Consensus 309 ~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 999887 3 356677777777766 348999999999998866 34556677777764 46899999999
Q ss_pred HhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 368 RSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
+...+.| .++.......+......++..+|..+.++..+
T Consensus 382 ~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 382 QLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9998876 33333222222222334456677777666554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=6.5e-17 Score=133.51 Aligned_cols=200 Identities=13% Similarity=0.039 Sum_probs=146.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
|++...+..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|+..|+++.+.. |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcH
Confidence 5678889999999999999999999999999875 6678889999999999999999999999999876 6678
Q ss_pred HHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 011362 100 VTYTTIIDGLCKE-----------GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN 168 (487)
Q Consensus 100 ~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 168 (487)
..+..+..++... |++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 8999999999888 77788887777777653 2356677777777777777777777777777765 46
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
...+..+..++...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6667777777777777777777777776653 2256666677777777777777777766553
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3e-16 Score=133.86 Aligned_cols=233 Identities=12% Similarity=0.006 Sum_probs=183.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
....|..+...+...|++++|+..|+++.+.. .+..++..++.++...|++++|+..++++.+..+..+...+.....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999887 7788999999999999999999999999887541100000001578
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
+..+..++...|++++|...|+++... .|+. ..+...|++++|...++++..... .+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 899999999999999999999999885 3443 345566788899999988887532 245667778888888
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHH
Q 011362 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSL 261 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 261 (487)
.|++++|...++.+.+... .+..++..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888888877633 367778888888888888888888888887764 55677777888888888888888888
Q ss_pred HHHHHHC
Q 011362 262 YSEMLSK 268 (487)
Q Consensus 262 ~~~~~~~ 268 (487)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877664
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=2e-16 Score=130.55 Aligned_cols=201 Identities=12% Similarity=0.003 Sum_probs=150.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV 134 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 134 (487)
+++...+..+...+...|++++|+..|+++.+.. |.+...+..+..++.+.|++++|+..+++..+.. +.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 4567778888888999999999999999998876 6778888899999999999999999999888764 3467
Q ss_pred hhHHHHHHHHHhc-----------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 011362 135 VTYTSVIRGFCYA-----------KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD 203 (487)
Q Consensus 135 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 203 (487)
..+..+..++... |++++|+..|++..+..+. +...+..+..++...|++++|+..|++..+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 7888888888888 8888888888888876433 56677778888888888888888888888776 57
Q ss_pred HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 204 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
...+..+..++...|++++|...|+++.+.. |.+...+..+..++...|++++|+..+++...
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 7788888888888888888888888887765 55677778888888888888888888776543
No 40
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.75 E-value=7.1e-14 Score=132.96 Aligned_cols=445 Identities=9% Similarity=0.004 Sum_probs=308.3
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHH
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH---TIVALNLF 81 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 81 (487)
.+.+..|++.+..+ |.|...|..++..+.+.++++.+..+|++++..- +.....|...+..-.+.|. ++.+.++|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 45667888888887 5699999999999999999999999999999873 6677889888888888888 99999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-CHhhHHHHHHHHHh----
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV--------DKAKELLLQMKD-KNI-KP-NVVTYTSVIRGFCY---- 146 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---- 146 (487)
++.....+ .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 127 ARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 99998641 138889999988877666553 334577877654 354 44 45678777765432
Q ss_pred -----cCChhhHHHHHHHHHHcCCCCChhhHHHHH---HHHH----------hCCChHHHHHHHHHHHHC--CC----C-
Q 011362 147 -----AKDWNEAKRLFIEMMDQGVQPNVVTFNVIM---DELC----------KNGKMDEASRLLDLMIQH--GV----R- 201 (487)
Q Consensus 147 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~----------~~~~~~~a~~~~~~~~~~--~~----~- 201 (487)
.++.+.+..+|++++......-..+|.... ..+. ...+++.|...+..+... ++ +
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 345678889999988531111112232211 1110 011233344444443211 11 1
Q ss_pred ----------C-----C---HHHHHHHHHHHHcCC-------CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHh
Q 011362 202 ----------P-----D---AFTYNTLLDGFCLTG-------RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIE 256 (487)
Q Consensus 202 ----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 256 (487)
| + ...|...+..--..+ ..+.+..+|+++...- +.....|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHH
Confidence 1 0 134555544333322 1234556788877653 667888999999888999999
Q ss_pred HHH-HHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCC------------cHHhHHH
Q 011362 257 GAL-SLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG---------VAA------------DTWTYRT 314 (487)
Q Consensus 257 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~ 314 (487)
+|. .+|++.... .+.+...+...+......|++++|..+|+.+.+.. ..| ...+|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 997 999999874 33456667778888889999999999999987631 012 1235777
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-CCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 315 FIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS-GRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 315 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.+....+.|..+.|..+|..+++.........|...+..-.+. ++++.|..+|+..++. .+.+...|..++......|
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 7777778899999999999998761133344454444333344 4599999999998876 3456677778888888899
Q ss_pred CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011362 394 QMDKARDLFLDMEENAVVP--NVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAK 461 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (487)
+.+.|..+|++.+.....+ ....|..++..-...|+.+.+.++.+++.+.- |+..-...+.+-|.-
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKYKV 586 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHhcC
Confidence 9999999999999864322 34678888888889999999999999999853 555555555555533
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.8e-16 Score=134.03 Aligned_cols=223 Identities=10% Similarity=0.032 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc--cC----hhhHHH
Q 011362 206 TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--PD----VVIHNT 279 (487)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 279 (487)
.+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...+.+....... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444445555555555555544443 34444445555555555555555555544432111 01 244455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 011362 280 LFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGR 359 (487)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 359 (487)
+...+...|++++|...+.++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555555555555555555553 2222 23444455666666666665543 3445556666666666667
Q ss_pred HHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 360 LEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
+++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...|..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777766666665542 3345666667777777777777777777776643 22456666677777777777777777777
Q ss_pred HHh
Q 011362 440 MKE 442 (487)
Q Consensus 440 ~~~ 442 (487)
+.+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=1.3e-16 Score=137.48 Aligned_cols=219 Identities=13% Similarity=-0.039 Sum_probs=113.8
Q ss_pred CccchHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011362 2 GRVSHGFVVLGRILKSCF---TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
|++++|+..|+.+++... +.+..++..++..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 455666666666665421 1134555666666666666666666666666553 334555666666666666666666
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
..|+++.+.. |.+...+..++.++...|++++|...|+++.+.. |+.......+..+...|++++|...+.
T Consensus 98 ~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 98 EAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhcC-------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666543 3445566666666666666666666666665542 232233333333444566666666665
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP---DAFTYNTLLDGFCLTGRVNHAKELFVSMES 232 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (487)
+..... +++...+ .++..+...++.++|...+.......... +..++..+...+...|++++|...|+++..
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 554432 1222222 24444555555555555555544321100 123344444444444555555554444443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=2.6e-15 Score=133.96 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=188.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH-TIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
..+|..+...+...|++++|+..++++++.. +.+..+|..+..++...|+ +++|+..|+++.+.+ |.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------P~~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------CCCHHH
Confidence 5678888888999999999999999998875 5567788899999999996 999999999999876 667889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
|..+..++...|++++|+..|+++++.. +-+..+|..+..++...|++++|+..++++++..+. +...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 347888999999999999999999999999887544 67788888888888
Q ss_pred -CCChHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 011362 182 -NGKMDEA-----SRLLDLMIQHGVRPDAFTYNTLLDGFCLTG--RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNK 253 (487)
Q Consensus 182 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (487)
.|..++| +..++..+.... -+...|..+...+...| ++++|.+.+.++ +. .+.+...+..++.+|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 5655777 477877777533 26678888888888877 578888888777 33 2556777888888887763
Q ss_pred ---------CHhHHHHHHHHH-HHC
Q 011362 254 ---------EIEGALSLYSEM-LSK 268 (487)
Q Consensus 254 ---------~~~~a~~~~~~~-~~~ 268 (487)
..++|+++++++ .+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHh
Confidence 247888888887 554
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=1.2e-15 Score=131.19 Aligned_cols=250 Identities=10% Similarity=-0.023 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC--hhhHHHHHH
Q 011362 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIHNTLFV 282 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 282 (487)
..+......+...|++++|...++++.+.. +.+...+..+..+|...|++++|+..++++......++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556667777788888888888777664 44555777777788888888888888888777321111 223677778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 011362 283 GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362 (487)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (487)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887763 3455778888888888999999999998888764 5567777777734444558999
Q ss_pred HHHHHHhccCCCCCCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCChhH
Q 011362 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ---MDKARDLFLDMEENA-VVPN------VITFDMLIRGFIRINEPSK 432 (487)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 432 (487)
|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998887753 3446777778888888787 888888888886531 1123 2567778888889999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 433 VIELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 433 a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
|.+.++++.+.. +.+......+....
T Consensus 240 A~~~~~~al~~~-p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALD-PTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHC---
T ss_pred HHHHHHHHHhcC-ccHHHHHHHhhhhh
Confidence 999999998864 33445555444433
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=2.2e-15 Score=134.41 Aligned_cols=236 Identities=11% Similarity=0.014 Sum_probs=198.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESR-IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+..|+.++... |.+..+|+.+..++...|+ +++|+..|+++++.. +.+..+|..+..++...|++++|+.
T Consensus 110 ~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred CCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHH
Confidence 478999999999999996 4579999999999999997 999999999999986 5678899999999999999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCChhhH-----
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY-AKDWNEA----- 153 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a----- 153 (487)
.|+++.+.+ |.+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..++|
T Consensus 188 ~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 188 FIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp HHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 999999987 7788999999999999999999999999999875 3478899999999998 6665887
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---------CHhH
Q 011362 154 KRLFIEMMDQGVQPNVVTFNVIMDELCKNG--KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG---------RVNH 222 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~ 222 (487)
+..+++.+...+. +...|..+...+...| ++++|+..+..+ +. .+.+...+..++.++...| ..++
T Consensus 260 l~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 5889998886433 6678888888888888 689999999888 33 3446788888999888864 2589
Q ss_pred HHHHHHHH-HHcCCCCCHhhHHHHHHHHH
Q 011362 223 AKELFVSM-ESMGCKHTVFSYSILINGYC 250 (487)
Q Consensus 223 a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 250 (487)
|.++++++ .+.+ +.....|..+...+.
T Consensus 337 A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 337 ALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 99999998 6653 444556666655543
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=2.6e-14 Score=122.84 Aligned_cols=225 Identities=11% Similarity=-0.011 Sum_probs=178.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCccccc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVALNLFEEMANGNGEFGVVCE 96 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 96 (487)
.++.++..+...+...|++++|+..|++..+ +.+..++..+...+.. .+++++|+..|++..+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 4677788888888899999999999998887 3455677788888888 899999999999888753
Q ss_pred cchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCC
Q 011362 97 PNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQPN 168 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 168 (487)
+...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 145 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence 56788888888888 889999999998888764 67788888888888 888899999888888765 4
Q ss_pred hhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 169 VVTFNVIMDELCK----NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 169 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
...+..+...|.. .+++++|...|+...+.+ +...+..+...+.. .+++++|...+++..+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 5666777777777 888888888888887763 45667777777877 888888888888887764 255
Q ss_pred hHHHHHHHHHc----cCCHhHHHHHHHHHHHCC
Q 011362 241 SYSILINGYCK----NKEIEGALSLYSEMLSKG 269 (487)
Q Consensus 241 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 269 (487)
.+..+..+|.. .+++++|...+++..+.+
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 67777777777 788888888888877654
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=2.9e-15 Score=128.82 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=101.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHH
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN--VVTYT 138 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 138 (487)
+......+...|++++|+..|+++.+.. |.+...+..+..++...|++++|++.++++.+....++ ...|.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 3444555555566666666666555543 33444555555556666666666666655555211111 12255
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
.+..++...|++++|+..|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...+
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 5555566666666666666665554222 34455555556666666666666665555441 224444444442233334
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC---HhHHHHHHHHHHH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE---IEGALSLYSEMLS 267 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 267 (487)
++++|...++++.+.. +.+...+..+..++...++ +++|...++++.+
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 6666666666655543 3334445555555555555 5555555555443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=8.6e-15 Score=124.29 Aligned_cols=201 Identities=13% Similarity=0.042 Sum_probs=110.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...|..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHH
Confidence 3445555666666666666666666665543 3345555556666666666666666666665543 3345555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
..++..+...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+... .+...+..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHH
Confidence 666666666666666666666655521122 344555555555666666666666666555422 134445555555555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
.|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555555555555432 224444555555555555555555555555544
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=1e-14 Score=121.35 Aligned_cols=205 Identities=8% Similarity=-0.079 Sum_probs=153.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.+..++..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~ 76 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------PDSA 76 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCh
Confidence 3456778888888888899999999888888764 4557778888888888888888888888888765 5567
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 100 VTYTTIIDGLCKE-GFVDKAKELLLQMKDKNIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 100 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
..+..++..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+... .+...+..+..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 155 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHH
Confidence 7888888888888 88888888888887732222 356777788888888888888888888877532 24666777777
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
.+...|++++|..+++.+.+.....+...+..+...+...|+.+.+..+++.+...
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77788888888888877766533135666666666777777777777777776654
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.3e-15 Score=128.51 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=130.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
....|..+...+...|++++|+..|+++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------SSAATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CcchHH
Confidence 35566777777888888888888888887754 4456677777788888888888888888877754 456677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 7777888888888888888888777653 33566777777777778888888888877776532 255566667777777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
.|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777777766653 2345666667777777777777777777766653
No 51
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=157.12 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=101.6
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHH---HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHH
Q 011362 308 DTWTYRTFIDGLCKNGYIVEAVELFHTLR---ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSI 384 (487)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (487)
-..+|+.++.+|++.|++++|..+|..|. ..|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777776654 345677777777777777777777777777777777777777777777
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------HHHHHHHHH
Q 011362 385 MIGGLCNDGQM-DKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPD------ASIVSIVVD 457 (487)
Q Consensus 385 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 457 (487)
++.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 77777777763 56777777777777777777777776544443 344444444 3334443 333444555
Q ss_pred HHHhccc
Q 011362 458 LLAKNEI 464 (487)
Q Consensus 458 ~~~~~g~ 464 (487)
.+.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 5555543
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=7.8e-14 Score=119.85 Aligned_cols=224 Identities=13% Similarity=-0.044 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCCHhHHHHHHHHHHHCCCccChhhHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIHN 278 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 278 (487)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555555666666666666665552 234455555556665 666666666666665543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCChHhHHHH
Q 011362 279 TLFVGLFE----IHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK----NGYIVEAVELFHTLRILKCEFDIRAYNSL 350 (487)
Q Consensus 279 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 350 (487)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 56666666 666666666666666543 45556666666666 677777777777766654 44555666
Q ss_pred HHHHHh----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011362 351 IDGLCK----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN----DGQMDKARDLFLDMEENAVVPNVITFDMLIR 422 (487)
Q Consensus 351 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 422 (487)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777766543 34566667777777 777777777777777653 2555666667
Q ss_pred HHHh----cCChhHHHHHHHHHHhcC
Q 011362 423 GFIR----INEPSKVIELLHKMKEIN 444 (487)
Q Consensus 423 ~~~~----~g~~~~a~~~~~~~~~~~ 444 (487)
.|.. .+++++|.+.+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7776 777777777777777755
No 53
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=158.12 Aligned_cols=125 Identities=9% Similarity=0.160 Sum_probs=82.8
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhcc---CCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLP---CGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITF 417 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 417 (487)
.....+|+++|.+|++.|++++|..+|.+|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445567777777777777777777765543 2356677777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 418 DMLIRGFIRINEP-SKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 418 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.+|.++++.|+. ++|.+++++|.+.|+.||..+|+.++....+.+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL 252 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH
Confidence 7777777776653 56667777777777777777776555555555444
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=2.2e-15 Score=129.74 Aligned_cols=248 Identities=9% Similarity=-0.016 Sum_probs=158.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 34 CAESRIMEAAALFTKLRVFGC---EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
...|++++|+..|+++.+... +.+..++..++..+...|++++|+..|+++.+.. |.+...+..++.++.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHH
Confidence 345778888888888877532 1234567777888888888888888888888765 556778888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHH
Q 011362 111 KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 111 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (487)
..|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHH
Confidence 8888888888888887753 3356777778888888888888888888887753 333333334444556677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 191 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCK---HTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
.++...... +++...+ .++..+...++.++|...+......... .+...+..+..+|...|++++|...++++..
T Consensus 166 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776666542 2233333 3555566666777777777666543210 1135566666666677777777777776665
Q ss_pred CCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 011362 268 KGIKPDVVIHNTLFVGLFEIHQVERAFKLF 297 (487)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 297 (487)
.. |+. +.....++...|++++|...+
T Consensus 244 ~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred CC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 42 211 222233445555555555444
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=3.2e-14 Score=120.73 Aligned_cols=163 Identities=12% Similarity=-0.027 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCChHhHHHHHHHHH
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC-EFDIRAYNSLIDGLC 355 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 355 (487)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++...+. +.+...+..++..+.
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 3333333444444444444444433321 12333344444444444444444444444443111 122334444444444
Q ss_pred hcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011362 356 KSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIE 435 (487)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (487)
..|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 153 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4555555555554444321 2234444455555555555555555555554432 1234444444555555555555555
Q ss_pred HHHHHHh
Q 011362 436 LLHKMKE 442 (487)
Q Consensus 436 ~~~~~~~ 442 (487)
.++++.+
T Consensus 231 ~~~~~~~ 237 (252)
T 2ho1_A 231 YGLQLKR 237 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=6.2e-15 Score=124.38 Aligned_cols=197 Identities=14% Similarity=0.089 Sum_probs=166.8
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.+++.. +.+..++..++..+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.
T Consensus 36 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDM 113 (243)
T ss_dssp ------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHH
Confidence 478999999999999975 5578899999999999999999999999999875 55778899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 114 ~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 114 FEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999876 5678899999999999999999999999998763 347888999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNT 209 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 209 (487)
.+... .+...+..+..++...|++++|...++.+.+.... +...+..
T Consensus 186 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~ 232 (243)
T 2q7f_A 186 TEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHA 232 (243)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHH
Confidence 88743 36778889999999999999999999999886332 4444443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=4.9e-15 Score=135.45 Aligned_cols=279 Identities=14% Similarity=0.076 Sum_probs=174.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccc
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVC 95 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 95 (487)
......+......+...|++++|+..|+++.+.. +.+ ..++..+...+...|++++|...++++.......+. .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-Q 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-c
Confidence 3456677888999999999999999999999874 333 356788899999999999999999987553210000 1
Q ss_pred ccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CC-CCHhhHHHHHHHHHhcCC--------------------h
Q 011362 96 EPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN----IK-PNVVTYTSVIRGFCYAKD--------------------W 150 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~--------------------~ 150 (487)
+....++..+...+...|++++|...+++..... .+ ....++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2335678888999999999999999998876531 00 113467788888888888 8
Q ss_pred hhHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCCH
Q 011362 151 NEAKRLFIEMMDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV-RPD----AFTYNTLLDGFCLTGRV 220 (487)
Q Consensus 151 ~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~ 220 (487)
++|...+++.... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 8888887776542 111 1123456666677777777777777766654210 011 22555666666666677
Q ss_pred hHHHHHHHHHHHcC----CCC-CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc-----cChhhHHHHHHHHHhcCCH
Q 011362 221 NHAKELFVSMESMG----CKH-TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-----PDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 221 ~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 290 (487)
++|...+++..... .++ ...++..+...|...|++++|...+++....... ....++..+...+...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 66666666654321 000 0334455555666666666666666555432100 0022344444444455555
Q ss_pred HHHHHHHHHH
Q 011362 291 ERAFKLFDEM 300 (487)
Q Consensus 291 ~~a~~~~~~~ 300 (487)
++|...+++.
T Consensus 324 ~~A~~~~~~a 333 (406)
T 3sf4_A 324 DQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=8.1e-14 Score=115.92 Aligned_cols=199 Identities=13% Similarity=0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
...+..++..+...|++++|++.|+++.+.. +.+...+..++.++...|++++|.+.++++.+.. +.+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 79 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHH
Confidence 3445555556666666666666666655543 3445555556666666666666666666655442 2244555
Q ss_pred HHHHHHHHhc-CChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011362 138 TSVIRGFCYA-KDWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC 215 (487)
Q Consensus 138 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (487)
..+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++.+.+... .+...+..+...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHH
Confidence 5555555555 66666666665555421111 133444455555555555555555555544321 13444555555555
Q ss_pred cCCCHhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 216 LTGRVNHAKELFVSMESMGCK-HTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
..|++++|...++.+.+.. + .+...+..+...+...|+.+.+..+++.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555555555554432 2 334444444444455555555555555444
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=8.3e-15 Score=134.21 Aligned_cols=241 Identities=13% Similarity=0.049 Sum_probs=154.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV----FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
..+..+...+...|++++|+..|+++.+.. +.+. .++..+...+...|++++|+..++++.+.....+. .+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-chHHH
Confidence 345567788899999999999999999874 3333 46788889999999999999999987764100000 13456
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHhhHHHHHHHHHhcCC-----------------hhhHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDK----N-IKPNVVTYTSVIRGFCYAKD-----------------WNEAKRLF 157 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 157 (487)
..+..+...|...|++++|...+++.... + .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 77888999999999999999999887653 1 11234467778888888888 88888877
Q ss_pred HHHHHc----CC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCCHhHHHHHH
Q 011362 158 IEMMDQ----GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR-PD----AFTYNTLLDGFCLTGRVNHAKELF 227 (487)
Q Consensus 158 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 227 (487)
++..+. +. ......+..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776542 11 111235556666777777777777777666543100 01 124555556666666666666666
Q ss_pred HHHHHcCCC-----CCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 228 VSMESMGCK-----HTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 228 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
++....... ....++..+..+|...|++++|...+++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555432100 012334445555555555555555555443
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=6.4e-12 Score=119.67 Aligned_cols=410 Identities=10% Similarity=0.021 Sum_probs=279.6
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCCh---
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESR---IMEAAALFTKLRVFG-CEPDVFTYTTLVNGLCRTSHT--- 74 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--- 74 (487)
|.++.|+.+|++++.. +|.....|...+..-.+.|+ ++.+..+|++.+... .+|++..|...+.-..+.++.
T Consensus 80 ~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~ 158 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITG 158 (679)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTT
T ss_pred CcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 5778899999999998 57789999999999999999 999999999999874 138888888777655555443
Q ss_pred -----HHHHHHHHHHHhCCCCCcccc--ccchHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHhhHH
Q 011362 75 -----IVALNLFEEMANGNGEFGVVC--EPNTVTYTTIIDGLCK---------EGFVDKAKELLLQMKDKNIKPNVVTYT 138 (487)
Q Consensus 75 -----~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~ 138 (487)
+...++|+.+...-+ . +.+...|...+..... .++++.+..+|++++......-..+|.
T Consensus 159 ~~~~r~~vr~~FErAl~~vG-----~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~ 233 (679)
T 4e6h_A 159 GEEARNIVIQAFQVVVDKCA-----IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQ 233 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-----cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 334578887665321 2 2345688888876543 345788999999988631111123333
Q ss_pred HHHHHHHh-------------cCChhhHHHHHHHHHHc--CCC---CC--------------------hhhHHHHHHHHH
Q 011362 139 SVIRGFCY-------------AKDWNEAKRLFIEMMDQ--GVQ---PN--------------------VVTFNVIMDELC 180 (487)
Q Consensus 139 ~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~~---~~--------------------~~~~~~l~~~~~ 180 (487)
.....-.. ..+++.|...+.++... ++. |. ...|...+..--
T Consensus 234 ~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk 313 (679)
T 4e6h_A 234 RYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWES 313 (679)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHH
Confidence 22211111 11233444555443221 111 10 122333333222
Q ss_pred hCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 011362 181 KNG-------KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK-ELFVSMESMGCKHTVFSYSILINGYCKN 252 (487)
Q Consensus 181 ~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (487)
..+ ....+..+|++++.. ++.+...|...+..+...|+.++|. .+|+..... +|.+...+..++....+.
T Consensus 314 ~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 314 DNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred hCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 221 123456778888776 4457888998888888999999997 999999875 366777778888889999
Q ss_pred CCHhHHHHHHHHHHHCCC---------ccC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 011362 253 KEIEGALSLYSEMLSKGI---------KPD------------VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWT 311 (487)
Q Consensus 253 ~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (487)
|+++.|.++|+.+..... .|+ ..+|...+....+.++.+.|..+|..+.+.........
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999886310 121 23677777777888999999999999987611222334
Q ss_pred HHHHHHHHHhC-CCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCC--cHHHHHHHHHH
Q 011362 312 YRTFIDGLCKN-GYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVP--NVVTYSIMIGG 388 (487)
Q Consensus 312 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 388 (487)
|...+..-.+. ++.+.|..+|+...+. .+.++..+...+......|+.+.|..+|++.......+ ....|...+..
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44444333344 4589999999999876 36677778888888888999999999999998864211 34678888888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011362 389 LCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422 (487)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 422 (487)
-...|+.+.+..+.+++.+.- |+......++.
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ 582 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTN 582 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 889999999999999998863 44333334443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.2e-14 Score=132.97 Aligned_cols=305 Identities=14% Similarity=0.062 Sum_probs=169.4
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-
Q 011362 132 PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRP- 202 (487)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 202 (487)
.....+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...++.+... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555666777777778888888888777765322 2 235566667777777777777777765432 1111
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHccCC-------------HhHHHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC-----KHTVFSYSILINGYCKNKE-------------IEGALSLYSE 264 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~ 264 (487)
...++..+...+...|++++|...+++..+... .....++..+...|...|+ ++++...
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--- 162 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--- 162 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---
Confidence 134555566666666666666666666543210 0012244444555555555 0000000
Q ss_pred HHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN----GV-AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
+++|...+.+..+. +. +....++..+...+...|++++|...+++.....
T Consensus 163 -------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 163 -------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444444333221 10 0112345555666666666666666666655321
Q ss_pred CC-C----ChHhHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-
Q 011362 340 CE-F----DIRAYNSLIDGLCKSGRLEIALELFRSLPCG----VLVP-NVVTYSIMIGGLCNDGQMDKARDLFLDMEEN- 408 (487)
Q Consensus 340 ~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 408 (487)
.. + ...++..+...|...|++++|...+++.... +..+ ...++..+...+...|++++|...++++.+.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 00 1 1235666666777777777777777665431 1011 1346667777777788888888877776542
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcccc
Q 011362 409 ---AVVP-NVITFDMLIRGFIRINEPSKVIELLHKMKEI----NVMP-DASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 409 ---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 465 (487)
+..+ ...++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 1445667777777888888888887776642 1111 234556666677777766
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=7.1e-15 Score=134.65 Aligned_cols=266 Identities=12% Similarity=0.009 Sum_probs=201.3
Q ss_pred CCccchHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHcc
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDA----VTFTSLIKGLCAESRIMEAAALFTKLRVF----G-CEPDVFTYTTLVNGLCRT 71 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~ 71 (487)
.|++++|+..|+++++.++ .+. .+|..+...|...|++++|+..++++.+. + .+....++..+...+...
T Consensus 61 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 4899999999999999853 344 57888999999999999999999998764 1 122345688899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHhC----CC
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF-----------------VDKAKELLLQMKDK----NI 130 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~~----~~ 130 (487)
|++++|...++++.+.....+. .+....++..+...+...|+ +++|.+.+++..+. +.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999987764210000 13345688889999999999 99999998886542 11
Q ss_pred -CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---
Q 011362 131 -KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-PN----VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR--- 201 (487)
Q Consensus 131 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 201 (487)
+....++..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...++........
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 112347888999999999999999999998764211 11 226778889999999999999999887754211
Q ss_pred --CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 202 --PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC-----KHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 202 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
....++..+...+...|++++|...+++...... .....++..+..+|...|++++|...+++....
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1256788889999999999999999998765310 112346677778888888888888888877663
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=2.1e-13 Score=119.24 Aligned_cols=219 Identities=9% Similarity=0.042 Sum_probs=132.3
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCA-------ESRI-------MEAAALFTKLRVFGCEPDVFTYTTLVNGLCR 70 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (487)
++|+.+|++++... |.++..|..++..+.. .|++ ++|+.+|+++++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887764 4567777777777653 4665 6777777777762113345567777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCccccccchH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcC
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEPNTV-TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC-YAK 148 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 148 (487)
.|++++|..+|+++.+.. |.+.. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|
T Consensus 112 ~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHhcc-------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcC
Confidence 777777777777777643 23333 67777777777777777777777776653 223344433333221 246
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHcCCCHhHHHH
Q 011362 149 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHG-VRP--DAFTYNTLLDGFCLTGRVNHAKE 225 (487)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~ 225 (487)
++++|..+|++..+..+ .+...|..++..+.+.|++++|..+|+...... ..| ....|..++......|+.+.|..
T Consensus 184 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666655422 245555556666666666666666666666542 232 34455555555555666666666
Q ss_pred HHHHHHHc
Q 011362 226 LFVSMESM 233 (487)
Q Consensus 226 ~~~~~~~~ 233 (487)
+++++.+.
T Consensus 263 ~~~~a~~~ 270 (308)
T 2ond_A 263 VEKRRFTA 270 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=1.9e-14 Score=127.81 Aligned_cols=242 Identities=14% Similarity=0.096 Sum_probs=150.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.++++.......+. .+..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-cHHH
Confidence 3445667888899999999999999999874 333 356778889999999999999999887653100000 1233
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCC--------------------hhhH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNI-KPN----VVTYTSVIRGFCYAKD--------------------WNEA 153 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 153 (487)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56788889999999999999999988765310 011 3367778888888888 7888
Q ss_pred HHHHHHHHHc----CCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHcCCCHhHH
Q 011362 154 KRLFIEMMDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV-----RPDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 154 ~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a 223 (487)
...+++.... +.. .....+..+...+...|++++|...++...+... .....++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8777766432 111 1123455566666677777777777766553210 00122445555555566666666
Q ss_pred HHHHHHHHHcCCC-C----CHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 224 KELFVSMESMGCK-H----TVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 224 ~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
...+++....... . ...++..+...+...|++++|...+++..
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6655554432100 0 02334444445555555555555554443
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=1.5e-13 Score=110.32 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=140.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
++.+|..+...|...|++++|++.|+++++.. +.+..++..+..++...|++++|+..+..+.... +.+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------TTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------chhHHH
Confidence 67788889999999999999999999998875 5577788889999999999999999999888765 566778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
+..+...+...++++.+.+.+.+..... +.+...+..+..++.+.|++++|++.|++..+..+. +...+..+..+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHH
Confidence 8888888889999999999998887763 346778888888999999999999999988876433 66778888888889
Q ss_pred CCChHHHHHHHHHHHHC
Q 011362 182 NGKMDEASRLLDLMIQH 198 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~ 198 (487)
.|++++|+..|++.++.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 99999999999888775
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=2.9e-13 Score=122.51 Aligned_cols=227 Identities=10% Similarity=-0.049 Sum_probs=138.9
Q ss_pred HHhcCCHHHHHHHHHHHHhc--CCCCCHH--HHHHHHHH--HHccCChHHHH-----------HHHHHHHhCCCCCcccc
Q 011362 33 LCAESRIMEAAALFTKLRVF--GCEPDVF--TYTTLVNG--LCRTSHTIVAL-----------NLFEEMANGNGEFGVVC 95 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~ 95 (487)
+.+.+++++|..+++++.+. ....+.. .|..++.. ....+..+.+. +.++.+....
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~------- 94 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ------- 94 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT-------
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC-------
Confidence 46789999999999998664 2223333 33333322 22233344444 6666665422
Q ss_pred ccchHH------HHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 96 EPNTVT------YTTIIDGLCKEGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 96 ~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
.+... +...+..+...|++++|...+++..+. +.++ ...++..+..+|...|++++|...+.+..+..
T Consensus 95 -~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 95 -ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY 173 (383)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22222 223666778889999999999888664 1111 24567788888888899998888888876531
Q ss_pred CC-C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 165 VQ-P-----NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR-P----DAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 165 ~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
.. + ...++..+..+|...|++++|...+++..+.... + ...++..+...+...|++++|...+++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 1 1235666777777888888888877776543100 1 1235666667777777777777777666542
Q ss_pred ----CC-CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 234 ----GC-KHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 234 ----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
+. +....++..+..+|.+.|++++|...+++...
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 33344566666666666777766666666554
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=1.5e-14 Score=128.42 Aligned_cols=266 Identities=11% Similarity=0.028 Sum_probs=197.8
Q ss_pred CCccchHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHcc
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD----AVTFTSLIKGLCAESRIMEAAALFTKLRVF----GCE-PDVFTYTTLVNGLCRT 71 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~ 71 (487)
.|++++|+..|+.+++.. +.+ ..++..+...+...|++++|++.++++... +.. ....++..+...+...
T Consensus 18 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 489999999999999985 334 467888999999999999999999987654 111 2245678889999999
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHhC---
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF--------------------VDKAKELLLQMKDK--- 128 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~--- 128 (487)
|++++|...+++..+..+..+. .+....++..+...+...|+ +++|.+.+++....
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987764311000 11124578889999999999 99999998876542
Q ss_pred -CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 011362 129 -NI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-P----NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 129 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
+. +....++..+...+...|++++|...+++..+.... + ....+..+...+...|++++|...++........
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 11 112446788899999999999999999988654111 1 1236778888999999999999999887653111
Q ss_pred -CC----HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC----C-CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 202 -PD----AFTYNTLLDGFCLTGRVNHAKELFVSMESMG----C-KHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 202 -~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.+ ..++..+...+...|++++|...+++..... . .....++..+...|...|++++|...+++....
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 5577888899999999999999998876531 0 111335667777888888888888888877664
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=4e-13 Score=121.57 Aligned_cols=296 Identities=11% Similarity=-0.000 Sum_probs=156.5
Q ss_pred HHhcCChhHHHHHHHHHHhC--CCCCC--HhhHHHHHHH--HHhcCChhhHH-----------HHHHHHHHcCCCCCh--
Q 011362 109 LCKEGFVDKAKELLLQMKDK--NIKPN--VVTYTSVIRG--FCYAKDWNEAK-----------RLFIEMMDQGVQPNV-- 169 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 169 (487)
+.+.+++++|..+++++.+. .+..+ ...|..++.. ....++++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999988653 22223 3333333322 12233344444 556555432111010
Q ss_pred --hhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC--C----C
Q 011362 170 --VTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG--C----K 236 (487)
Q Consensus 170 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~ 236 (487)
..+......+...|++++|...++...+. +..+ ...++..+...+...|++++|...+.+..+.. . +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 01112445667788888888888887654 1111 23566777777788888888888777765431 0 1
Q ss_pred CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc-c----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 011362 237 HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-P----DVVIHNTLFVGLFEIHQVERAFKLFDEMQRN----GV-A 306 (487)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~ 306 (487)
....++..+..+|...|++++|...+.+....... + ...++..+...|...|++++|...+.+..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 11345666667777777777777777766542110 0 1124555566666666666666666665541 11 2
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC----CCCChHhHHHHHHHHHhcCC---HHHHHHHHHhccCCCCCCcH
Q 011362 307 ADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK----CEFDIRAYNSLIDGLCKSGR---LEIALELFRSLPCGVLVPNV 379 (487)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~ 379 (487)
....++..+...+...|++++|...+++..... .+.....+..+...+...|+ +++|..++++... .+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHH
Confidence 233455556666666666666666665554321 11111223444455555555 5555555554421 11122
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 380 VTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
..+..+...|...|++++|...+++..
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=2.8e-12 Score=112.01 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=163.0
Q ss_pred CHHhHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHH
Q 011362 22 DAVTFTSLIKGLCAE----SRI----MEAAALFTKLRVFGCEPDVFTYTTLVNGLC-------RTSHT-------IVALN 79 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~ 79 (487)
+...|...+..-.+. ++. ++|+.+|++++... +.++..|..++..+. ..|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345666666664443 233 78999999999874 667788888887775 35886 89999
Q ss_pred HHHHHHhC-CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHHhcCChhhHHHH
Q 011362 80 LFEEMANG-NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN-VV-TYTSVIRGFCYAKDWNEAKRL 156 (487)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~ 156 (487)
+|++..+. . |.+...|..++..+.+.|++++|.++|+++.+. .|+ .. +|..++..+.+.|++++|..+
T Consensus 86 ~~~rAl~~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 86 IYERAISTLL-------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHTTTT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhC-------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999983 4 556778999999999999999999999999885 343 43 788888888889999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHH-hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-
Q 011362 157 FIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG- 234 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 234 (487)
|++..+... ++...|...+.... ..|++++|..+|+..++.. +.+...+..++..+.+.|++++|..+|++.....
T Consensus 157 ~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 157 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 999887532 23333333322221 2577777777777766542 2255666666666666777777777777666642
Q ss_pred CCC--CHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 235 CKH--TVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 235 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.+| ....|..++....+.|+.+.|..+++++.+.
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 232 3445566666666666666666666666553
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=4.9e-14 Score=130.72 Aligned_cols=214 Identities=11% Similarity=-0.046 Sum_probs=177.5
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRI-MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
++++|++.++...... +.+...+..+...+...|++ ++|++.|+++++.. +.+..+|..+..+|...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567888888877764 45788999999999999999 99999999999885 556889999999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKE---------GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA----- 147 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 147 (487)
+++.+.. |+...+..+..++... |++++|++.|++..+.. +.+...|..+..+|...
T Consensus 161 ~~al~~~--------p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 161 SGALTHC--------KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHTTC--------CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhC--------CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999865 5578999999999999 99999999999998864 34678888899999888
Q ss_pred ---CChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH
Q 011362 148 ---KDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 222 (487)
Q Consensus 148 ---~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (487)
|++++|+..|++..+.... .+...+..+..+|...|++++|...|++..+... .+...+..+..++...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998876431 3677788888888888899999888888877632 256677777777777787777
Q ss_pred HHHHHH
Q 011362 223 AKELFV 228 (487)
Q Consensus 223 a~~~~~ 228 (487)
|.+.+.
T Consensus 311 Ai~~~~ 316 (474)
T 4abn_A 311 LLESKG 316 (474)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 776543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=8e-14 Score=129.29 Aligned_cols=196 Identities=12% Similarity=-0.022 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 011362 97 PNTVTYTTIIDGLCKEGFV-DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|++..+.. |+...+..+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~l 176 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNL 176 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHH
Confidence 3444555555555555555 55555555554432 1234455555555555555555555555554432 334444445
Q ss_pred HHHHHhC---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--------CCHhHHHHHHHHHHHcCCC--
Q 011362 176 MDELCKN---------GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT--------GRVNHAKELFVSMESMGCK-- 236 (487)
Q Consensus 176 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~-- 236 (487)
...+... |++++|+..+++..+... .+...+..+..++... |++++|...|++..+.. +
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCc
Confidence 5555555 555555555555554421 2344555555555554 55555555555555542 2
Q ss_pred -CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 237 -HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFD 298 (487)
Q Consensus 237 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (487)
.+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|++++|...+.
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555555555555555543222 33445555555555555555555443
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=4e-13 Score=107.80 Aligned_cols=88 Identities=15% Similarity=0.018 Sum_probs=33.1
Q ss_pred HHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHH
Q 011362 317 DGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMD 396 (487)
Q Consensus 317 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (487)
..+...++++.+...+.+..... +.+...+..+...|...|++++|++.|+++.+.. +.+..+|..+..+|...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 33333344444444443333322 2233333333333334444444444443333321 222333333334444444444
Q ss_pred HHHHHHHHHH
Q 011362 397 KARDLFLDME 406 (487)
Q Consensus 397 ~A~~~~~~~~ 406 (487)
+|...|++++
T Consensus 159 ~A~~~~~~al 168 (184)
T 3vtx_A 159 EAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.2e-14 Score=125.90 Aligned_cols=177 Identities=14% Similarity=0.048 Sum_probs=136.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-c
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVF-------GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEF-G 92 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 92 (487)
.+..++..+...+...|++++|+.+++++.+. ..+....++..+...+...|++++|...++++....... +
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999999874 223345678889999999999999999999987641000 0
Q ss_pred cccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc--
Q 011362 93 VVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK------NI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ-- 163 (487)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 163 (487)
...+.....+..+...+...|++++|...++++.+. +. +....++..+...+...|++++|+..++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 001445678889999999999999999999988764 21 224556788889999999999999999988764
Q ss_pred ----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 164 ----GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 164 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
+..| ....+..+...+...|++++|...++.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234677788888899999999999888775
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=9.3e-14 Score=121.90 Aligned_cols=248 Identities=13% Similarity=0.051 Sum_probs=154.1
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc----
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-------NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ---- 163 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 163 (487)
.+.+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999988763 22334567888899999999999999999988764
Q ss_pred --CC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 164 --GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH------GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 164 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
+. +.....+..+...+...|++++|...++.+.+. +. +.....+..+...+...|++++|...++++...
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 223456777888888899999999888887654 11 223456677778888888888888888877654
Q ss_pred ------C-CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC-------CccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011362 234 ------G-CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG-------IKPDVVIHNTLFVGLFEIHQVERAFKLFDE 299 (487)
Q Consensus 234 ------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 299 (487)
+ .+.....+..+..+|...|++++|...++++.... ..+........
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------- 243 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH------------------- 243 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------
Confidence 1 12234456677777777888888888777776521 01111111111
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 300 MQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
...+......+...+.+.++...+....... +....++..+..+|...|++++|...+++..
T Consensus 244 ---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 244 ---------AEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---------HHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1112222233334455555555555555432 3445566666667777777777777766654
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=1.2e-11 Score=111.55 Aligned_cols=308 Identities=10% Similarity=-0.023 Sum_probs=152.5
Q ss_pred ccchHHHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCC--CCHhhHHHHHHH--HHhcCChhhHH---------HHHH
Q 011362 96 EPNTVTYTTIIDGL--CKEGFVDKAKELLLQMKDK--NIK--PNVVTYTSVIRG--FCYAKDWNEAK---------RLFI 158 (487)
Q Consensus 96 ~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~--~~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 158 (487)
-|+..+-..+-..| ...+++++|..+++++.+. .+. ++...|..++.. ....+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555555555 6788999999999887553 121 223333333332 11122222222 5555
Q ss_pred HHHHcCCCCCh-h---hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHcCCCHhHHHHHHHH
Q 011362 159 EMMDQGVQPNV-V---TFNVIMDELCKNGKMDEASRLLDLMIQHGV-RP----DAFTYNTLLDGFCLTGRVNHAKELFVS 229 (487)
Q Consensus 159 ~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (487)
.+.....+.+. . .+......+...|++++|+..+++..+... .+ ...++..+...+...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 54332111010 0 122233455677788888888777765311 01 234566677777777777777777776
Q ss_pred HHHcC--CC----CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 230 MESMG--CK----HTVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIHNTLFVGLFEIHQVERAFKLFD 298 (487)
Q Consensus 230 ~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (487)
..+.. .. ....++..+..+|...|++++|...+.+.... +.. ....++..+...+...|++++|...+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65421 00 11344556666677777777777776665542 111 112244455555566666666666665
Q ss_pred HHHH-----cCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC----CCChHhHHHHHHHHHhcCC---HHHHHHH
Q 011362 299 EMQR-----NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC----EFDIRAYNSLIDGLCKSGR---LEIALEL 366 (487)
Q Consensus 299 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~ 366 (487)
+..+ .. +....++..+...+.+.|++++|...+++...... +.....+..+...+...++ +.+|...
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 5544 21 22244455555555555666666555555543211 1112223334444444444 4455555
Q ss_pred HHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 367 FRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
+++... .+.....+..+...|...|++++|...|+++.
T Consensus 326 ~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 326 FEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444221 01112233444455555555555555555443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=1.7e-11 Score=110.65 Aligned_cols=307 Identities=12% Similarity=-0.007 Sum_probs=170.0
Q ss_pred CCHHhHHHHHHHH--HhcCCHHHHHHHHHHHHhcC--CCCCHH--HHHHHHHH--HHccCChHHHH---------HHHHH
Q 011362 21 PDAVTFTSLIKGL--CAESRIMEAAALFTKLRVFG--CEPDVF--TYTTLVNG--LCRTSHTIVAL---------NLFEE 83 (487)
Q Consensus 21 ~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~~~l~~~--~~~~g~~~~a~---------~~~~~ 83 (487)
|+..+-+.|-..| ...+++++|..+++++.... ...|.. .|..++.. ....+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4555566666677 88999999999999876531 222333 33333322 11112222222 55666
Q ss_pred HHhCCCCCccccccch----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----CHhhHHHHHHHHHhcCChhhHH
Q 011362 84 MANGNGEFGVVCEPNT----VTYTTIIDGLCKEGFVDKAKELLLQMKDKNI-KP----NVVTYTSVIRGFCYAKDWNEAK 154 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~ 154 (487)
+.... .+.+. ..+...+..+...|++++|...|++..+... .+ ...++..+..+|...|+++.|.
T Consensus 88 i~~~~------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 88 IETPQ------KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHGGG------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccC------CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 54422 01111 1233455667788899999999888765411 01 2446777888888888888888
Q ss_pred HHHHHHHHcCCC-C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCCHhHH
Q 011362 155 RLFIEMMDQGVQ-P-----NVVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVR-PDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 155 ~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a 223 (487)
..+.+..+.... + ...+++.+..+|...|++++|...+++..+. +.. ....++..+..++...|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 888887653111 1 1345666777788888888888887776542 111 1124556666777777777777
Q ss_pred HHHHHHHHHc----CCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc---c-ChhhHHHHHHHHHhcCC---HHH
Q 011362 224 KELFVSMESM----GCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK---P-DVVIHNTLFVGLFEIHQ---VER 292 (487)
Q Consensus 224 ~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~---~~~ 292 (487)
...+++..+. +.+....++..+..+|.+.|++++|...+++....... + ....+..+...+...++ ..+
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 7777766541 11223455666666666777777777776666552111 1 11223333333444444 444
Q ss_pred HHHHHHHHHHcCCCCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 011362 293 AFKLFDEMQRNGVAAD-TWTYRTFIDGLCKNGYIVEAVELFHTLR 336 (487)
Q Consensus 293 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 336 (487)
|...++. .+..++ ...+..+...|...|++++|...|++..
T Consensus 322 al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 322 LLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444433 111111 2233445555555555555555555543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=2.1e-11 Score=109.86 Aligned_cols=276 Identities=11% Similarity=-0.030 Sum_probs=170.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF----TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
.+......+...|++++|...+++........+.. ++..+...+...|++++|...+++.....+..+. ......
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-WHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-HHHHHH
Confidence 34455667778999999999999988764222322 4566777888999999999999987764311000 011123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC----Ch
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDK----NIK--P-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP----NV 169 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~ 169 (487)
++..+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++........ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 4667788888999999999999887653 221 2 23456667888888999999999998887643221 12
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHcCCCHhHHHHHHHHHHHcCCCC---CHh
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD--AFTYN----TLLDGFCLTGRVNHAKELFVSMESMGCKH---TVF 240 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 240 (487)
..+..+...+...|++++|...++........++ ..... ..+..+...|++++|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 3456677778888888888888887764311111 11111 22334667788888887777765432111 112
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHC----CCccCh-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSK----GIKPDV-VIHNTLFVGLFEIHQVERAFKLFDEMQ 301 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (487)
.+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+.+..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566666777777777776665432 111111 133344445555556666555555544
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=1.5e-12 Score=125.56 Aligned_cols=168 Identities=12% Similarity=-0.003 Sum_probs=150.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
|.++.+|+.|..+|.+.|++++|++.|+++++.. +.+..++..+..+|.+.|++++|++.|+++.+.+ |.+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-------P~~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-------PTFA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCH
Confidence 3458889999999999999999999999999885 5567889999999999999999999999999876 6678
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 179 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (487)
..|..+..++...|++++|++.|++..+.. +-+..+|..+..++...|++++|++.|++.++.... +...+..+..++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l 155 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHH
Confidence 999999999999999999999999998864 336889999999999999999999999999987543 677888999999
Q ss_pred HhCCChHHHHHHHHHHHH
Q 011362 180 CKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~ 197 (487)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999998887764
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=4.9e-12 Score=101.45 Aligned_cols=166 Identities=15% Similarity=0.019 Sum_probs=116.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|+..++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------PDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHH
Confidence 4456667777778888888888887776653 4456667777777778888888888888777654 4566777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHc
Confidence 777777777777777777777776653 33566677777777777777777777777766532 2455666666677777
Q ss_pred CChHHHHHHHHHHHHC
Q 011362 183 GKMDEASRLLDLMIQH 198 (487)
Q Consensus 183 ~~~~~a~~~~~~~~~~ 198 (487)
|++++|...++.+.+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7777777777666543
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=6.7e-11 Score=106.57 Aligned_cols=270 Identities=10% Similarity=-0.019 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh----hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHH
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV----TFNVIMDELCKNGKMDEASRLLDLMIQHGV-RPD----AFTYN 208 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 208 (487)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445566777777777777766643222211 334455566666777777777766554210 011 12234
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc----ChhhH
Q 011362 209 TLLDGFCLTGRVNHAKELFVSMESM----GCK--H-TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP----DVVIH 277 (487)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 277 (487)
.+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+.+........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555566666666666666665432 111 1 12334445555566666666666666555421110 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHH----HHHHHHHhCCCHhHHHHHHHHHHHcCCCC---ChHhHH
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRNGVAAD--TWTYR----TFIDGLCKNGYIVEAVELFHTLRILKCEF---DIRAYN 348 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 348 (487)
..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 4444555555555555555555443211110 10110 11222445555555555555544322110 011233
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC----CCCCcH-HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 349 SLIDGLCKSGRLEIALELFRSLPCG----VLVPNV-VTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
.+...+...|++++|...+++.... +..++. .++..+..++...|++++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444455555555555555444321 101111 1333344444455555555555555544
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.47 E-value=1.5e-12 Score=112.29 Aligned_cols=163 Identities=10% Similarity=-0.003 Sum_probs=125.6
Q ss_pred CCccchHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKS-------CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF------GC-EPDVFTYTTLVN 66 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~ 66 (487)
.|++++|+..|+++++. +.+....++..+...|...|++++|+..++++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 36778888888887763 22335778899999999999999999999998865 21 223457888999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCc-cccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCCHhhHH
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFG-VVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK------N-IKPNVVTYT 138 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~ 138 (487)
.+...|++++|++.++++.......+ ...+.....+..+..++...|++++|...+++..+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999876410000 001445678899999999999999999999988764 1 122356788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
.+..++...|++++|...++++.+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999988763
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.5e-11 Score=102.34 Aligned_cols=209 Identities=10% Similarity=-0.020 Sum_probs=161.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.++..+......+...|++++|+..|+++.+...+++...+..+..++...|++++|+..|++..+.. |.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------YNLA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CSHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------cchH
Confidence 346788889999999999999999999999988643788888889999999999999999999999876 6678
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---h
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV-------VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN---V 169 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 169 (487)
..+..+..++...|++++|.+.+++..+.. +.+. ..|..+...+...|++++|+..|+++.+. .|+ .
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 153 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKT 153 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccH
Confidence 899999999999999999999999998863 2344 45888889999999999999999999875 444 4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILIN 247 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (487)
..+..+..++...| ..+++.+...+. .+...+.... ....+.+++|...+++..+.. |.+..+...+..
T Consensus 154 ~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 154 DALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 56666777775443 344555554432 2344444333 334566899999999998875 445555544443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=2.4e-11 Score=101.07 Aligned_cols=206 Identities=15% Similarity=0.008 Sum_probs=161.0
Q ss_pred CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH
Q 011362 236 KHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTF 315 (487)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (487)
+.++..+......+...|++++|+..|++......+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678889999999999999999999999987654677777789999999999999999999999864 3456788899
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc---HHHHHHH
Q 011362 316 IDGLCKNGYIVEAVELFHTLRILKCEFDI-------RAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN---VVTYSIM 385 (487)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 385 (487)
..++...|++++|...+++..+.. +.+. ..+..+...+...|++++|...|+++.+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999875 4455 55788888899999999999999999986 454 5678888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHHHHH
Q 011362 386 IGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA-SIVSIV 455 (487)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 455 (487)
..+|...| ...++++...+ ..+...|.... ....+.+++|...+++..+.. |+. .+...+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 88886544 44456665543 22444444333 345667899999999999864 544 444443
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=1e-11 Score=119.78 Aligned_cols=168 Identities=10% Similarity=0.010 Sum_probs=147.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV 134 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 134 (487)
+.+..+++.+..++.+.|++++|++.|++..+.. |.+..++..+..+|.+.|++++|++.|++..+.. +-+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 3456789999999999999999999999999876 6678899999999999999999999999998864 3367
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011362 135 VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGF 214 (487)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (487)
.+|..+..++...|++++|++.|++.++.... +...+..+..+|...|++++|+..|++.++... -+...+..+..++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l 155 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHH
Confidence 89999999999999999999999999887543 677889999999999999999999999988743 2678899999999
Q ss_pred HcCCCHhHHHHHHHHHHH
Q 011362 215 CLTGRVNHAKELFVSMES 232 (487)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~ 232 (487)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999999888754
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=3.4e-11 Score=96.51 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=85.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
.+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 34455555556666666666666655543 3445555566666666666666666666655442 224455555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
+...+...|++++|.+.++++..... .+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|+
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCC
Confidence 55555556666666666655554422 234444445555555555555555555554432 1234444445555555555
Q ss_pred HhHHHHHHHHHH
Q 011362 220 VNHAKELFVSME 231 (487)
Q Consensus 220 ~~~a~~~~~~~~ 231 (487)
+++|...++.+.
T Consensus 160 ~~~A~~~~~~~~ 171 (186)
T 3as5_A 160 HEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 86
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.38 E-value=2.6e-09 Score=98.92 Aligned_cols=376 Identities=9% Similarity=-0.019 Sum_probs=198.2
Q ss_pred C-ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hHHHHH
Q 011362 2 G-RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH-TIVALN 79 (487)
Q Consensus 2 g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~ 79 (487)
| +++.|+.+|++++..- |. |+++.+..+|++.+.. .|+...|...+.-..+.++ .+....
T Consensus 8 ~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 8 GVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred CcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 5 4888999999988763 23 8899999999999985 5799998888877766663 456777
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCC-H-hhHHHHHHHHHhcCChhhH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLC----KEGFVDKAKELLLQMKDKNIKPN-V-VTYTSVIRGFCYAKDWNEA 153 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a 153 (487)
+|+.+...-+. -+.+...|...+..+. ..++.+.+..+|++.+.. ++. . ..|...... ........+
T Consensus 70 ~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~ 142 (493)
T 2uy1_A 70 VYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITG 142 (493)
T ss_dssp HHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccH
Confidence 88887764210 1456788888887654 246788999999999874 221 1 122222111 111111222
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--C-----CHhHHHHH
Q 011362 154 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT--G-----RVNHAKEL 226 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~ 226 (487)
.+++.+.. +.+..|..+++.+...-...+...|...+..-... + ..+.+..+
T Consensus 143 ~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 22222111 01112222222211100001222333333322111 0 02334455
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 011362 227 FVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN--- 303 (487)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 303 (487)
|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+.. |....+.++. ++.+.+.
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHh
Confidence 65555432 444555666666666666666666666666655 222222211 1111111111 1111110
Q ss_pred ------CC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCCHHHHHHHHHhccCC
Q 011362 304 ------GV---AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK-SGRLEIALELFRSLPCG 373 (487)
Q Consensus 304 ------~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 373 (487)
+. ......|...+....+.+..+.|..+|+.+ ... +.+...|...+..-.. .++.+.|..+|+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 00 011234555555555667788888888877 221 2233344332222222 23578888888877654
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 374 VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
. +.++..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2234455556666667788888888888762 256667777766667788888888777776
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.36 E-value=1.2e-11 Score=106.71 Aligned_cols=164 Identities=12% Similarity=-0.006 Sum_probs=121.1
Q ss_pred HhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-ccccccchHHHHHH
Q 011362 34 CAESRIMEAAALFTKLRVF-------GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEF-GVVCEPNTVTYTTI 105 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 105 (487)
...|++++|+..|++.++. ..+....++..+...+...|++++|+..++++.+..... +...+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888877777653 212345578889999999999999999999987641000 00014456788999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCC-Chhh
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDK------N-IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ------GVQP-NVVT 171 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 171 (487)
..++...|++++|.+.+++.... . .+....++..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 1 1234567888889999999999999999988764 1122 3456
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 172 FNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 172 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
+..+...+...|++++|..+++.+.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888888888888888887765
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=8.2e-11 Score=101.74 Aligned_cols=173 Identities=11% Similarity=-0.013 Sum_probs=122.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVF----GCEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
.|...+..|...|++++|+..|+++... +-+++ ..++..+..+|...|++++|+..+++..+..+..|. .....
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a 117 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGA 117 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 4666677888999999999999998765 21122 457889999999999999999999988764311000 01114
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-C----HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh---
Q 011362 100 VTYTTIIDGLCKE-GFVDKAKELLLQMKDKNIKP-N----VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV--- 170 (487)
Q Consensus 100 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 170 (487)
.++..+..+|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|++..+........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5778888888886 89999988888876531100 1 3457778888888888888888888887754332221
Q ss_pred ---hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 171 ---TFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 171 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
.+..+..++...|++++|...|++..+.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3556666777788888888888777653
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=1.2e-10 Score=98.98 Aligned_cols=104 Identities=11% Similarity=0.009 Sum_probs=87.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccc
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCE 96 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 96 (487)
+.+...+..+...+.+.|++++|+..|+++++.. +.+ ..++..++.++...|++++|+..|+++.+..+. .+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~----~~ 86 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI----DP 86 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC----Cc
Confidence 4467788888999999999999999999999874 333 668889999999999999999999999987521 12
Q ss_pred cchHHHHHHHHHHHh--------cCChhHHHHHHHHHHhC
Q 011362 97 PNTVTYTTIIDGLCK--------EGFVDKAKELLLQMKDK 128 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~ 128 (487)
.....+..+..++.. .|++++|+..|+++.+.
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 345678888899988 99999999999999876
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=2.7e-10 Score=98.45 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=81.1
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCC----cc-ChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-c----H
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGI----KP-DVVIHNTLFVGLFEI-HQVERAFKLFDEMQRNGVAA-D----T 309 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 309 (487)
+|..+..+|...|++++|+..+++...... .. ...++..+...|... |++++|...+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 445555555555555555555555443110 00 022344555555553 66666666666554421000 0 2
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCh------HhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH----
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDI------RAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV---- 379 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 379 (487)
.++..+...+...|++++|...|++.......... ..+..+..++...|++++|...|++..+. .|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 34556666666667777777777666654322111 13455556666667777777777666653 2221
Q ss_pred --HHHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 011362 380 --VTYSIMIGGLC--NDGQMDKARDLFLDME 406 (487)
Q Consensus 380 --~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 406 (487)
..+..++.++. ..+++++|+..|+++.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 12233344443 3345555555555543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=2.2e-09 Score=90.69 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=27.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
.+..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444444555555555544443322 11233344444444444444444444444444
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=8.3e-10 Score=90.30 Aligned_cols=178 Identities=13% Similarity=-0.030 Sum_probs=140.4
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC----ChHHHHHH
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS----HTIVALNL 80 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 80 (487)
++|++.|+.+.+.| ++.++..+...|...+++++|+.+|++..+.| ++..+..+...|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46888999998874 78888889999999999999999999998754 56777788888877 6 89999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh----cCChh
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIK-PNVVTYTSVIRGFCY----AKDWN 151 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~ 151 (487)
|++..+.+ ++..+..|...|.. .+++++|+++|++..+.|.. .++..+..|...|.. .++++
T Consensus 76 ~~~A~~~g---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 76 AEKAVEAG---------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHTT---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHCC---------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99987744 56788888888877 78999999999998887531 126778888888887 77899
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHHhC-C-----ChHHHHHHHHHHHHCCC
Q 011362 152 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-G-----KMDEASRLLDLMIQHGV 200 (487)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 200 (487)
+|+.+|++..+. ..+...+..+..+|... | ++++|..+|+...+.|.
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999988876 22444666677777543 2 78888888888877654
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.29 E-value=3.9e-11 Score=116.35 Aligned_cols=150 Identities=11% Similarity=-0.065 Sum_probs=81.4
Q ss_pred CccchHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011362 2 GRVSHGFVVLGRIL--------KSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH 73 (487)
Q Consensus 2 g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 73 (487)
|++++|++.|++++ +.. +.+...+..+..++...|++++|+..|+++.+.+ +.+...+..+..++...|+
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCC
Confidence 45555566665555 332 3344555555555555666666666665555543 3344555555555555566
Q ss_pred hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011362 74 TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEA 153 (487)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 153 (487)
+++|+..|+++.+.. |.+...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|
T Consensus 483 ~~~A~~~~~~al~l~-------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 483 YDSATKHFTEVLDTF-------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 666666665555543 3345555555555555555555 55555555442 22444555555555555555555
Q ss_pred HHHHHHHHH
Q 011362 154 KRLFIEMMD 162 (487)
Q Consensus 154 ~~~~~~~~~ 162 (487)
++.|+++.+
T Consensus 554 ~~~~~~al~ 562 (681)
T 2pzi_A 554 VRTLDEVPP 562 (681)
T ss_dssp HHHHHTSCT
T ss_pred HHHHHhhcc
Confidence 555555544
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=9e-10 Score=93.10 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=138.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
++...-.|++..++.-..++. ..........+.++++..|++.... . ..|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~~---------~------~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQD---------P------TSKLGKVLDLYVQFL 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCCC---------S------SSTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccCC---------C------CCHHHHHHHHHHHHh
Confidence 456667788888777333322 1222233344557777777766310 1 133434444444443
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhCCChHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEA 188 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 188 (487)
..+ |+..|+++...+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 222 566677666554 34555556677777777888888888777765543 12455566667777777888888
Q ss_pred HHHHHHHHHCCCCC-----CHHHHHHHHHHH--Hc--CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHH
Q 011362 189 SRLLDLMIQHGVRP-----DAFTYNTLLDGF--CL--TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGAL 259 (487)
Q Consensus 189 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 259 (487)
.+.++.|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 8877777664 33 244444455442 22 23677777777776544 343223334444667777777777
Q ss_pred HHHHHHHHCC---------CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011362 260 SLYSEMLSKG---------IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN 303 (487)
Q Consensus 260 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (487)
+.++.+.+.. -+.++.++..++......|+ .|.+++.++.+.
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 7776554321 01234444444444444554 566666666664
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=7.3e-11 Score=96.36 Aligned_cols=158 Identities=8% Similarity=-0.004 Sum_probs=106.9
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTS----------------LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTL 64 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 64 (487)
.|++++|+..|+.++... |.+...|.. +..+|...|++++|+..|+++++.. +.+...+..+
T Consensus 17 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 94 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEAC 94 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 488999999999999875 335666766 7778888888888888888887765 4566777778
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF--VDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
..++...|++++|+..|+++.+.. |.+..++..+..+|...|+ ...+...+..... ..|....+..+..
T Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~ 165 (208)
T 3urz_A 95 AEMQVCRGQEKDALRMYEKILQLE-------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 888888888888888888887765 5567777777777765543 3344455544432 1222233444555
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQGVQPNVVT 171 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 171 (487)
++...|++++|+..|++.++. .|+...
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 666677778888888777764 445433
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.29 E-value=4.2e-09 Score=97.49 Aligned_cols=367 Identities=10% Similarity=-0.036 Sum_probs=217.4
Q ss_pred hcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC
Q 011362 35 AES-RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 35 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
+.| +++.|..+|+++... -|. |+++.+..+|++.... .|+...|...+....+.+
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~ 61 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVS 61 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhC
Confidence 346 478888888888765 233 8899999999999985 368999999998887776
Q ss_pred C-hhHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHH----hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH---hCC
Q 011362 114 F-VDKAKELLLQMKDK-NI-KPNVVTYTSVIRGFC----YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC---KNG 183 (487)
Q Consensus 114 ~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~ 183 (487)
. .+....+|+..... |. +.+...|...+..+. ..++.+.+.++|++++.. |.. ....+-..|. ...
T Consensus 62 ~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~ 137 (493)
T 2uy1_A 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELEL 137 (493)
T ss_dssp ----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHh
Confidence 4 45677788877653 42 346778888877654 245688899999999873 211 1122222221 111
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC--C-----Hh
Q 011362 184 KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNK--E-----IE 256 (487)
Q Consensus 184 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~ 256 (487)
....+..++.... +.+..|..+++.+...-...+...|...+..-...+ - .+
T Consensus 138 ~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~ 196 (493)
T 2uy1_A 138 NKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHES 196 (493)
T ss_dssp CHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHH
T ss_pred ccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHH
Confidence 2222333322211 123334444444332100113345555555432221 1 34
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHH-HHHHHHH
Q 011362 257 GALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEA-VELFHTL 335 (487)
Q Consensus 257 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 335 (487)
.+..+|++++... +.+...|...+..+...|+.+.|..++++.... +.+...+.. |......++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 5778999988753 345778888888889999999999999999987 333322222 2221111122 1222221
Q ss_pred HHc--------CCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 011362 336 RIL--------KCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN-DGQMDKARDLFLDME 406 (487)
Q Consensus 336 ~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 406 (487)
... ........|...+....+.++.+.|..+|+++ ... ..+..+|...+..-.. .++++.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 100 00112356777777777788999999999999 321 2344455433332223 336999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 407 ENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.. +.++..+...+......|+.+.|..+++++. .....|...++.-.+.|+.
T Consensus 348 ~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 348 LKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCH
Confidence 753 2245566777887788999999998888862 2345555555544445554
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.29 E-value=3.3e-10 Score=85.28 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=99.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
+|..++..+...|++++|+.+++++.+.+ +.+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCchHHHHH
Confidence 46677888888888888888888887764 4456677778888888888888888888887755 455677777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++...
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888888888877653 335667777788888888888888888877664
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.28 E-value=2.1e-10 Score=93.66 Aligned_cols=166 Identities=8% Similarity=-0.018 Sum_probs=102.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTT----------------LVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
++..+......+...|++++|+..|+++.+.. +.+...+.. +..++...|++++|+..|++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445556778889999999999999999874 334455655 6667777777777777777777
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--hhhHHHHHHHHHHc
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD--WNEAKRLFIEMMDQ 163 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 163 (487)
+.. |.+...+..+..++...|++++|...|++..+.. |.+..++..+..+|...|. ...+...+.....
T Consensus 82 ~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~- 152 (208)
T 3urz_A 82 QKA-------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS- 152 (208)
T ss_dssp HHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-
T ss_pred HHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-
Confidence 655 4566677777777777777777777777776653 2355666666666654432 2334444444321
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 164 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
..|....+.....++...|++++|...|++.++.
T Consensus 153 -~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 153 -PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred -CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1222222333344555566666666666666654
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.27 E-value=4.4e-10 Score=95.56 Aligned_cols=188 Identities=7% Similarity=-0.073 Sum_probs=123.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc---hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN---TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNI- 130 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 130 (487)
+.+...+..+...+...|++++|+..|+++.+.. |.+ ...+..++.++.+.|++++|+..|+++.+...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 4466777888888999999999999999998875 334 67888899999999999999999999987631
Q ss_pred -CCCHhhHHHHHHHHHh--------cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 011362 131 -KPNVVTYTSVIRGFCY--------AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 131 -~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
+....++..+..++.. .|++++|+..|+++++..+. +......+.. +..+...
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~--- 146 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK--- 146 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH---
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH---
Confidence 1224567778888888 89999999999998876322 2222211110 0000000
Q ss_pred CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHcc----------CCHhHHHHHHHHHHHC
Q 011362 202 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH--TVFSYSILINGYCKN----------KEIEGALSLYSEMLSK 268 (487)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 268 (487)
....+..+...+...|++++|...|+.+.+..... ....+..+..+|... |++++|...++++...
T Consensus 147 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 147 -LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 01123445566666677777777766666542110 233455556666544 6667777777776664
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=6.7e-11 Score=90.78 Aligned_cols=143 Identities=9% Similarity=-0.092 Sum_probs=73.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
..+...|++++|+..++...... +.+...+..+...|...|++++|++.|+++.+.. |.+..+|..+..++.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------ERDPKAHRFLGLLYE 76 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 34444555566666555554331 1122234455555666666666666666655544 445555666666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHH-HHHHHHcCCCCChhhHHHHHHHHHhCC
Q 011362 111 KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRL-FIEMMDQGVQPNVVTFNVIMDELCKNG 183 (487)
Q Consensus 111 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (487)
..|++++|+..|++..+.. +-+..+|..+..++.+.|++++|.+. +++..+..+. ++..|......+...|
T Consensus 77 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666666666555542 22455555555566666655554443 3555544222 3444444444444444
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=4.7e-11 Score=91.66 Aligned_cols=138 Identities=12% Similarity=-0.038 Sum_probs=92.1
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+..++.++... |.+...+..+...|.+.|++++|++.|+++++.. +.+..+|..+..++...|++++|+..|
T Consensus 11 ~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 45677777777776653 2235556667777777777777777777777764 456667777777777777777777777
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL-LLQMKDKNIKPNVVTYTSVIRGFCYAKD 149 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 149 (487)
+++.+.. |.+..++..+..+|.+.|++++|.+. +++..+.. |-++.+|......+...|+
T Consensus 89 ~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 89 RRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 7777765 45667777777777777777665544 46666542 2355666666666555553
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=3.3e-10 Score=108.11 Aligned_cols=155 Identities=8% Similarity=-0.021 Sum_probs=122.5
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|++.|+++++.. +.+...|..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 489999999999999885 4578899999999999999999999999999875 55678899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CChhhHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA---KDWNEAKRLF 157 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 157 (487)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 80 ~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999876 6678899999999999999999999999998864 34678889999999999 9999999999
Q ss_pred HHHHHcCC
Q 011362 158 IEMMDQGV 165 (487)
Q Consensus 158 ~~~~~~~~ 165 (487)
++..+.+.
T Consensus 152 ~~al~~~p 159 (568)
T 2vsy_A 152 RAAVAQGV 159 (568)
T ss_dssp HHHHHHTC
T ss_pred HHHHhcCC
Confidence 99988753
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=1.9e-10 Score=111.60 Aligned_cols=174 Identities=11% Similarity=-0.062 Sum_probs=111.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 34 CAESRIMEAAALFTKLR--------VFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
...|++++|++.++++. +.. +.+...+..+..++...|++++|+..|+++.+.+ |.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHHH
Confidence 56677777777777776 332 3445566667777777777777777777777654 4566677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCCh
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 185 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (487)
..++...|++++|++.|++..+.. +-+...+..+..++.+.|++++ ++.|+++.+.... +...+..+..++...|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCH
Confidence 777777777777777777776653 2255666677777777777777 7777777665332 455666677777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 186 DEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 186 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
++|+..|+++.+.+. .+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 777777776655421 134455555555554443
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=2.4e-09 Score=88.60 Aligned_cols=190 Identities=7% Similarity=-0.094 Sum_probs=123.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE-P-DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+...+..++..+...|++++|+..|+++.+.... + ....+..++.++.+.|++++|+..|+++.+..+.. +.-.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~----~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH----PNID 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----TTHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----CcHH
Confidence 4556677788899999999999999999986422 1 13578888999999999999999999999866210 1111
Q ss_pred HHHHHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 100 VTYTTIIDGLCK------------------EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 100 ~~~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
.++..+..++.. .|++++|...|+++.+.. |-+..++....... .+...+.
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~ 147 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH
Confidence 355555555554 456677777777776642 11222222111100 0000000
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
.....+...+.+.|++++|+..|+.+++..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011345667888888888888888887763221 12467778888888888888888888877664
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=7e-10 Score=95.48 Aligned_cols=163 Identities=12% Similarity=0.006 Sum_probs=69.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...++++.... |......
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-------p~~~~~~ 188 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-------QDTRYQG 188 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-------CSHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-------cchHHHH
Confidence 3344444444445555555555555544442 2333444444445555555555555554444322 1111111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCK 181 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 181 (487)
......+...++.+.|...+++..... +.+...+..+...+...|++++|+..|.++.+..+.. +...+..++..+..
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 122222333444444444444444432 2234444444444444555555555554444432211 12334444444444
Q ss_pred CCChHHHHHHHHH
Q 011362 182 NGKMDEASRLLDL 194 (487)
Q Consensus 182 ~~~~~~a~~~~~~ 194 (487)
.|+.++|...+++
T Consensus 268 ~g~~~~a~~~~r~ 280 (287)
T 3qou_A 268 LGTGDALASXYRR 280 (287)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 4444444444433
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.20 E-value=3.2e-10 Score=89.81 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.... | +...+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-------p-~~~~~~~ 78 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-------Q-DNSYKSL 78 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-------C-CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-------C-ChHHHHH
Confidence 45556777788888888888888877654 4456677778888888888888888888776643 3 4433333
Q ss_pred HHHH-HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhC
Q 011362 105 IIDG-LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCKN 182 (487)
Q Consensus 105 l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 182 (487)
+... +...+....|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 2222 122223344667777766652 2356677777777777777777777777777654332 244566677777777
Q ss_pred CChHHHHHHHHHHH
Q 011362 183 GKMDEASRLLDLMI 196 (487)
Q Consensus 183 ~~~~~a~~~~~~~~ 196 (487)
|+.++|...|++.+
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777777776554
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=4.1e-08 Score=83.96 Aligned_cols=227 Identities=15% Similarity=0.035 Sum_probs=169.6
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 30 IKGLCAESRI-MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS--HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 30 ~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
+.+..+.|.+ ++|+..++.++..+ +.+..+|+.-..++...| ++++++++++.+...+ |.+..+|+.-.
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-------Pk~y~aW~~R~ 110 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-------EKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-------TTCCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-------cccHHHHHHHH
Confidence 3444455655 68999999999885 556677888888888888 9999999999999987 56667776555
Q ss_pred HHH----Hhc---CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh--hHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 107 DGL----CKE---GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWN--EAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 107 ~~~----~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
.++ ... +++++++++++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++++..+. +...|+....
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ 188 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 555 445 78999999999998875 348888888888888888888 999999999887554 6777777666
Q ss_pred HHHhCCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH-HHHHHHHHHHcC--CCCCHhhHHHHHHH
Q 011362 178 ELCKNGK------MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH-AKELFVSMESMG--CKHTVFSYSILING 248 (487)
Q Consensus 178 ~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~ 248 (487)
.+...+. ++++++.++.++...+. |...|+.+...+.+.|+... +..+..++.+.+ -+.++..+..++.+
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 6666666 77888888887776433 77778777777777776443 444555554332 13456677777777
Q ss_pred HHccCCHhHHHHHHHHHHH
Q 011362 249 YCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~ 267 (487)
|.+.|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 7777888888888887765
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=1.3e-08 Score=87.00 Aligned_cols=231 Identities=8% Similarity=0.022 Sum_probs=183.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hcc---CCh
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAES--RIMEAAALFTKLRVFGCEPDVFTYTTLVNGL----CRT---SHT 74 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 74 (487)
.++|+..++.++..+ |-+..+|+.-..++...| ++++++..++.++..+ +-+..+|+.-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 368999999999997 447888999889998999 9999999999999886 45566666555444 445 789
Q ss_pred HHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---
Q 011362 75 IVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD--KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD--- 149 (487)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 149 (487)
++++.+++++.+.+ |.+..+|+--.-++.+.|.++ ++++.++++.+.+. -|..+|+....+....+.
T Consensus 127 ~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 127 YREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 99999999999987 778889988888888889888 99999999998754 488889888777777776
Q ss_pred ---hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHhHH
Q 011362 150 ---WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 150 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 223 (487)
++++++.+++++...+. |...|+.+...+.+.|+... +..+...+...+ ...++..+..++.++...|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999999887554 78888888888888887444 555666655432 134778889999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSIL 245 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l 245 (487)
.++++.+.+.--|.....|...
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHH
Confidence 9999999863114444444443
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=1.8e-10 Score=91.33 Aligned_cols=152 Identities=12% Similarity=0.036 Sum_probs=123.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG-LCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 79 (487)
.|++++|+..|+++++.. |.+...+..+..++...|++++|+..|+++.... |+...+...... +...+....|+.
T Consensus 19 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHH
Confidence 489999999999999886 4578899999999999999999999999998764 355444333222 223334445789
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP-NVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
.+++..+.. |.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|+
T Consensus 96 ~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 96 RLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 999998875 6678999999999999999999999999998875332 35688899999999999999999998
Q ss_pred HHHH
Q 011362 159 EMMD 162 (487)
Q Consensus 159 ~~~~ 162 (487)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=2.5e-09 Score=87.43 Aligned_cols=176 Identities=10% Similarity=-0.055 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC----Chh
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG----FVD 116 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 116 (487)
+|+++|++..+. -++.++..+...|...+++++|+.+|++..+.+ ++..+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 456667666664 356666677777777777777777777776643 45666666666666 5 677
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----CCChHH
Q 011362 117 KAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCK----NGKMDE 187 (487)
Q Consensus 117 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 187 (487)
+|.++|++..+.| +...+..|...|.. .+++++|+.+|++..+.+.. .....+..|...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7777777776654 45666666666665 66777777777777665421 014555666666666 566777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-C-----CHhHHHHHHHHHHHcC
Q 011362 188 ASRLLDLMIQHGVRPDAFTYNTLLDGFCLT-G-----RVNHAKELFVSMESMG 234 (487)
Q Consensus 188 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 234 (487)
|..+|++..+. ..+...+..|...|... | ++++|...|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777766655 12333445555555432 2 6666666666666554
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.2e-09 Score=80.67 Aligned_cols=129 Identities=12% Similarity=0.200 Sum_probs=73.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
.+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++...+ +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 34455566666666666666666665543 3445556666666666666666666666665542 224455555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
+...+...|++++|.+.++++..... .+...+..+...+...|++++|...++.+..
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666666666555422 2344455555555556666666655555544
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=3.1e-09 Score=87.93 Aligned_cols=174 Identities=9% Similarity=0.024 Sum_probs=115.7
Q ss_pred CCccchHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CH-HHHHHHHHHHHc------
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD--AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP-DV-FTYTTLVNGLCR------ 70 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~------ 70 (487)
.|++++|+..|+.++...+... ..++..++.+|.+.|++++|+..|+++.+..... .. .++..+..++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~ 96 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL 96 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 3899999999999998753321 3578889999999999999999999999874221 11 245555555543
Q ss_pred ------------cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 011362 71 ------------TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYT 138 (487)
Q Consensus 71 ------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 138 (487)
.|++++|+..|+++.+.. |.+...+....... .+...+ .....
T Consensus 97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~----------~~~~~~--------~~~~~ 151 (225)
T 2yhc_A 97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLV----------FLKDRL--------AKYEY 151 (225)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHH----------HHHHHH--------HHHHH
T ss_pred hhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHH----------HHHHHH--------HHHHH
Confidence 678999999999999876 33333332211110 000000 11123
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASRLLDLMIQHG 199 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 199 (487)
.+...+.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 456677778888888888888776532211 2356667778888888888888888777653
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=3e-09 Score=91.51 Aligned_cols=165 Identities=13% Similarity=-0.002 Sum_probs=87.2
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH-H
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNV-I 175 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 175 (487)
.+...+..+...+.+.|++++|...|+++.... +-+...+..+...+...|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 344455555555556666666666666655542 2244555556666666666666666666554432 22222111 1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccC
Q 011362 176 MDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT--VFSYSILINGYCKNK 253 (487)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 253 (487)
...+...++.++|...++...... +.+...+..+...+...|++++|...|.++.... +.+ ...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcC
Confidence 122444455555555555555542 2245555556666666666666666666665543 111 445566666666666
Q ss_pred CHhHHHHHHHHHH
Q 011362 254 EIEGALSLYSEML 266 (487)
Q Consensus 254 ~~~~a~~~~~~~~ 266 (487)
+.+.|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666666655543
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=1.7e-09 Score=94.23 Aligned_cols=193 Identities=10% Similarity=-0.029 Sum_probs=95.8
Q ss_pred CccchHHHHHHHHHhCCC------CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCF------TPD----AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC---EP--DVFTYTTLVN 66 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~ 66 (487)
|++++|.++++++.+... .++ ...|...+..|...|++++|...|.++..... .+ -..++..+..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678899999998876421 122 22455555556666666666666666544310 00 1224555566
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCC-CHhhHHHHH
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN----IKP-NVVTYTSVI 141 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~ 141 (487)
+|...|++++|+..|++..+.....+. ......++..+..+|.. |++++|+..|++..... ..+ ...++..+.
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 666666666666666655432100000 00113445555555555 66666666665554321 000 123455555
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCC----CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGV----QPN-VVTFNVIMDELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 196 (487)
.++...|++++|+..|++...... .+. ...+..+..++...|++++|...|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555556666666655555544210 000 1133334444445555555555555554
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=3.8e-09 Score=100.79 Aligned_cols=155 Identities=9% Similarity=-0.060 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh
Q 011362 36 ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV 115 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (487)
.|++++|++.|+++.+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCH
Confidence 478999999999998764 4567889999999999999999999999999976 66788999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC---CChHHHHHHH
Q 011362 116 DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN---GKMDEASRLL 192 (487)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 192 (487)
++|.+.+++..+.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..++... |++++|...+
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999998874 346788999999999999999999999999887433 567788899999999 9999999999
Q ss_pred HHHHHCCC
Q 011362 193 DLMIQHGV 200 (487)
Q Consensus 193 ~~~~~~~~ 200 (487)
++..+.+.
T Consensus 152 ~~al~~~p 159 (568)
T 2vsy_A 152 RAAVAQGV 159 (568)
T ss_dssp HHHHHHTC
T ss_pred HHHHhcCC
Confidence 99988643
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=2.4e-08 Score=81.76 Aligned_cols=129 Identities=10% Similarity=-0.029 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+...|++++|+..|+++. .|+..++..++..+...|++++|+..|++..+.. +.+...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchHHHHH
Confidence 45667888889999999999998874 5678889999999999999999999999998875 567888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC--------------C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIK--------------P-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
+..++...|++++|.+.|++..+.... | ....+..+..++...|++++|...|++..+..
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999999998875321 0 12677888889999999999999999988764
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.02 E-value=5.2e-09 Score=82.91 Aligned_cols=118 Identities=8% Similarity=0.043 Sum_probs=83.7
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCCh--HHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG-LCRTSHT--IVAL 78 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~a~ 78 (487)
|++++|+..++.++... |.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++|+
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 66777777777777765 4467777777777778888888888887777664 4456666666766 6677777 7777
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..++++.+.. |.+...+..+..++...|++++|...|+++.+.
T Consensus 102 ~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777754 455667777777777777777777777777765
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=1.2e-08 Score=75.23 Aligned_cols=109 Identities=11% Similarity=-0.034 Sum_probs=76.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+......|.+.|++++|++.|+++++.. +.+..+|..+..++...|++++|+..|++..+.+ |.+...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------SKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------hhhhHHH
Confidence 4556667777777777777777777777664 4566677777777777777777777777777765 5566777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV 140 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 140 (487)
..+..++...|++++|++.|++..+.. |-+...+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 777777777777777777777777653 2244444433
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=1e-08 Score=89.26 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=57.1
Q ss_pred hcCCHHHHHHHHHHHHhcCC------CCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 35 AESRIMEAAALFTKLRVFGC------EPDV----FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~------~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
..|++++|.+++++..+... .++. ..|...+..|...|++++|...|.+........+. ......+|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~ 81 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQ 81 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 35677888888887765311 1121 12344444555555666655555554432100000 0011234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+..+|...|++++|+..|++.... |-+. ...++..+..+|.. |++++|+..|++..
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 555555555555555555544321 1000 12234444444444 55555555554443
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=3.3e-07 Score=79.19 Aligned_cols=171 Identities=8% Similarity=-0.022 Sum_probs=132.9
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-ChHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT-S-HTIVALN 79 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~ 79 (487)
..++|+++++.++..+ |-+..+|+.-..++...| .+++++.+++.++... +-+..+|+.-..++... + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4578999999999997 447888998888888888 5999999999999876 56777888777666665 6 8899999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD--------KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD-- 149 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 149 (487)
+++++.+.+ +.+..+|+--.-++.+.|.++ ++++.++++.+... -|..+|+....++.+.+.
T Consensus 147 ~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 147 YIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 999999987 677888877666666666666 88889998888753 478888888888777765
Q ss_pred -----hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 150 -----WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 150 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
++++++.+++++...+. |...|+.+-..+.+.|.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 57788888887776433 66667665555555554
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=3e-08 Score=77.47 Aligned_cols=131 Identities=9% Similarity=-0.060 Sum_probs=97.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|+..+++..+.. +.+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHH
Confidence 4456777888888888888888888888764 4567778888888888888888888888888765 5567788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH--HHHHHHhcCChhhHHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS--VIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
..+..++...|++++|...|++..... +.+...+.. ++..+...|++++|+..+.....
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888888888887653 224444433 33336677888888887776543
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=1.5e-08 Score=77.17 Aligned_cols=99 Identities=15% Similarity=-0.016 Sum_probs=71.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++.+.. |.++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHH
Confidence 35566667777777777777777777777764 4556677777777777777777777777777765 556677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|..+..+|...|++++|...|++..+.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777777665
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.97 E-value=1.6e-09 Score=95.48 Aligned_cols=150 Identities=8% Similarity=-0.061 Sum_probs=108.5
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--------------VFTYTTLVNGL 68 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 68 (487)
++++|+..++..+... +.+...+..+...+.+.|++++|+..|+++++...... ..++..+..++
T Consensus 128 ~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555442 22567788899999999999999999999988752221 46777778888
Q ss_pred HccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011362 69 CRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK 148 (487)
Q Consensus 69 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 148 (487)
.+.|++++|+..++++.+.. |.+...+..+..+|...|++++|+..|++..+.. +.+..++..+..++...|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 88888888888888887765 5567777888888888888888888888877653 335667777777777777
Q ss_pred ChhhH-HHHHHHHH
Q 011362 149 DWNEA-KRLFIEMM 161 (487)
Q Consensus 149 ~~~~a-~~~~~~~~ 161 (487)
+.++| ...|..|.
T Consensus 279 ~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 279 RQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777 34555553
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.96 E-value=1.1e-06 Score=75.88 Aligned_cols=175 Identities=11% Similarity=-0.062 Sum_probs=129.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
...+..++|++++++++..+ +.+..+|+.-..++...| .+++++.+++.+...+ |.+..+|+.-..++...
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-------PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-------LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-------CCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHh
Confidence 34445578999999999885 556677887777777788 5999999999999887 67788888777777766
Q ss_pred -C-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh--------hHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 113 -G-FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWN--------EAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 113 -g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
+ +++++++.++.+.+.. +-+..+|+.-..++.+.+.++ ++++.++++++..+. |...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 6 8899999999998875 347778877666666666665 888888888887544 677777777777776
Q ss_pred CC-------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 183 GK-------MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 183 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
+. ++++++.++.++.... -|...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 65 5777777777776533 366777666555555554
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.95 E-value=4.2e-09 Score=80.36 Aligned_cols=112 Identities=13% Similarity=0.009 Sum_probs=93.7
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
-..|++++... |.+...+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++...
T Consensus 7 ~~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34577777764 3467778888899999999999999999988875 567788888999999999999999999999887
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
. |.+...+..+..++...|++++|...|++..+.
T Consensus 85 ~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 D-------IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp S-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 567788888999999999999999999888765
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=3.7e-08 Score=80.64 Aligned_cols=124 Identities=12% Similarity=-0.068 Sum_probs=105.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++ +|+..+|..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..
T Consensus 19 ~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp TTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHH
Confidence 488999999999885 4588899999999999999999999999999875 56778899999999999999999999
Q ss_pred HHHHHhCCCCCcc---------ccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011362 81 FEEMANGNGEFGV---------VCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN 129 (487)
Q Consensus 81 ~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 129 (487)
|+++.+..+.... ..+.....+..+..++...|++++|.+.|++..+..
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999986532110 012234889999999999999999999999998864
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.94 E-value=2e-08 Score=83.77 Aligned_cols=185 Identities=7% Similarity=-0.106 Sum_probs=121.8
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCC-----------------
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSL-------IKGLCAESRIMEAAALFTKLRVFGCEPD----------------- 57 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------- 57 (487)
++.++|++.|.++...+ |-....|..+ ...+...++..+++..+.+.... .|+
T Consensus 20 ~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccccc
Confidence 67788888888888886 4468888877 56666666777777766665542 111
Q ss_pred -----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011362 58 -----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP 132 (487)
Q Consensus 58 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 132 (487)
..........+...|++++|.++|+.+...+ |-+. ....+...+.+.+++++|+..|+...... .|
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-------p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-------SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-------CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cc
Confidence 1233445666777888888888887776644 2233 55566667777888888888887554431 11
Q ss_pred C--HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 133 N--VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 133 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1 23566677777788888888888887764322132 234455666777778888888888777765
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=1.4e-08 Score=74.98 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=87.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|++.|+++++.+ |.+..+|..+..+|.+.|++++|+..|+++++.+ +.+...|..++.++...|++++|++.
T Consensus 26 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 489999999999999986 5589999999999999999999999999999886 56788899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|++..+.. |.+...+..+..+
T Consensus 104 ~~~al~l~-------P~~~~a~~~l~~~ 124 (126)
T 4gco_A 104 YEDALQVD-------PSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHH
T ss_pred HHHHHHHC-------cCCHHHHHHHHHh
Confidence 99999976 5566666665543
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=3.3e-07 Score=79.16 Aligned_cols=161 Identities=9% Similarity=0.017 Sum_probs=77.6
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccch----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----Hh
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT----VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIK-PN----VV 135 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~ 135 (487)
+..+...|++++|..++++..+... ..++. ..+..+...+...|++++|+..+++....... ++ ..
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4555666666677666666665431 01111 12223455555556666666666666553211 11 12
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQ-----GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRP-DA 204 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 204 (487)
+++.+..+|...|++++|+..|+++.+. +..+ ...++..+...|.+.|++++|+..+++..+. +..+ -.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 4555666666666666666666665531 0011 1123444555555555555555555544431 1111 13
Q ss_pred HHHHHHHHHHHcCCC-HhHHHHHHHHH
Q 011362 205 FTYNTLLDGFCLTGR-VNHAKELFVSM 230 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~-~~~a~~~~~~~ 230 (487)
.++..+..++...|+ +++|.+.+++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 344444455555552 35555444443
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.92 E-value=5e-08 Score=71.87 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=81.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
..+|..+...+...|++++|++.++++.... +.+..++..+...+...|++++|+.+++++.+.. +.+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CccHHHH
Confidence 5667777788888888888888888877764 4456677777778888888888888888877654 4566777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
..+..++...|++++|...++++.+.. +.+...+..+...+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777777778888888888887776653 234445555554443
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=3.5e-07 Score=78.97 Aligned_cols=163 Identities=9% Similarity=-0.049 Sum_probs=116.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCcH----HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-CC----hHhHHH
Q 011362 280 LFVGLFEIHQVERAFKLFDEMQRNGV-AADT----WTYRTFIDGLCKNGYIVEAVELFHTLRILKCE-FD----IRAYNS 349 (487)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 349 (487)
.+..+...+++++|...+++..+... .|+. ..+..+...+...+++++|...++++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776421 1221 12334666677778899999999888864322 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC----C-CCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 011362 350 LIDGLCKSGRLEIALELFRSLPC----G-VLVPN-VVTYSIMIGGLCNDGQMDKARDLFLDMEEN----AVVPN-VITFD 418 (487)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 418 (487)
+..+|...|++++|...++++.+ . +..+. ..++..++.+|...|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999998888763 1 11222 347888999999999999999999888642 22222 56788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 011362 419 MLIRGFIRINE-PSKVIELLHKMKE 442 (487)
Q Consensus 419 ~l~~~~~~~g~-~~~a~~~~~~~~~ 442 (487)
.+..++.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999994 6999999988864
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.91 E-value=3.7e-08 Score=73.60 Aligned_cols=119 Identities=13% Similarity=-0.025 Sum_probs=83.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
.+...|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~ 85 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------PTFIK 85 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCchH
Confidence 346667777778888888888888888877654 4456677777777778888888888888777754 45667
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK 148 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 148 (487)
.+..+..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777777777788888887777776652 223445555555554443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.90 E-value=2e-08 Score=81.50 Aligned_cols=161 Identities=11% Similarity=-0.099 Sum_probs=114.6
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHccCChH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF----GCE-PDVFTYTTLVNGLCRTSHTI 75 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~ 75 (487)
.|++++|.+.++.+.. .+.....++..+...+...|++++|+..+++.... +.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4889999996666654 33345778999999999999999999999998763 111 23446788889999999999
Q ss_pred HHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCh
Q 011362 76 VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~ 150 (487)
+|...+++..+.....+.........+..+..++...|++++|...+++.... +.+. ...++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 99999998776411000000123456788888899999999999998887642 1110 122456777788888888
Q ss_pred hhHHHHHHHHHH
Q 011362 151 NEAKRLFIEMMD 162 (487)
Q Consensus 151 ~~a~~~~~~~~~ 162 (487)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=3.9e-08 Score=73.19 Aligned_cols=120 Identities=8% Similarity=-0.038 Sum_probs=84.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|+..+++..+.. +.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-------PAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-------ccCHHH
Confidence 45566777777778888888888888877664 4456677777777778888888888888777654 455667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
+..+..++...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 7777777777788888887777776653 23555666666666665543
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=3.9e-09 Score=80.37 Aligned_cols=99 Identities=10% Similarity=-0.099 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++..... |.++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHH
Confidence 34456667777777777777777777777765 5567777777777777777777777777776653 235666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
|..+..+|...|++++|+..|++..+.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777777765
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=3.3e-08 Score=80.21 Aligned_cols=163 Identities=12% Similarity=-0.046 Sum_probs=110.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
+...|++++|.+.++.+... ......++..+...+...|++++|...+++........+. .+.....+..+...+...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHc
Confidence 35689999999966655442 2245667888999999999999999999988762211000 134566788889999999
Q ss_pred CChhHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHh
Q 011362 113 GFVDKAKELLLQMKDK----NIKP--NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-PN----VVTFNVIMDELCK 181 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~ 181 (487)
|++++|.+.+++.... +..+ ....+..+...+...|++++|...+++....... .+ ..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999887653 2111 2345777888888899999999988887643110 11 2234566667777
Q ss_pred CCChHHHHHHHHHHHH
Q 011362 182 NGKMDEASRLLDLMIQ 197 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~ 197 (487)
.|++++|...+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 8888888777776543
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=3e-08 Score=84.96 Aligned_cols=96 Identities=14% Similarity=-0.044 Sum_probs=43.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..++++.+.. |.+...+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 75 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHH
Confidence 3344444444444455555555554444432 2234444444444444444444444444444433 3333444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMK 126 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~ 126 (487)
..+..++...|++++|...|++..
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444433
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=8.9e-08 Score=74.73 Aligned_cols=129 Identities=9% Similarity=-0.082 Sum_probs=93.4
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL 389 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (487)
..+..+...+...|++++|...++...... +.+..++..+...+...|++++|...+++..... +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666677778888888888888877664 4567777788888888888888888888777653 44567788888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 011362 390 CNDGQMDKARDLFLDMEENAVVPNVITFDM--LIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
...|++++|...++++.+... .+...+.. .+..+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888877532 24444433 3333667788888888877654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=2.4e-08 Score=85.47 Aligned_cols=197 Identities=11% Similarity=-0.017 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 011362 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV 135 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 135 (487)
.+...+..++..+...|++++|+..|+++.+.. |.+...+..+..++...|++++|...+++..+.. +.+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 73 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 73 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHH
Confidence 355678888999999999999999999999875 5678899999999999999999999999998874 34678
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC 215 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (487)
.+..+..++...|++++|...|++..+.... +...+...+....+ ...... +..........+......+...
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--
Confidence 8999999999999999999999998775321 11112112222111 111122 2223333344454444444332
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-CCHhHHHHHHHHHHHC
Q 011362 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN-KEIEGALSLYSEMLSK 268 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 268 (487)
..|++++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+.
T Consensus 147 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2688999999988887663 33444444455555554 6788999999887653
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=4.5e-07 Score=78.29 Aligned_cols=95 Identities=7% Similarity=0.005 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH---cCCC-C--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCC-CH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMD---QGVQ-P--NVVTFNVIMDELCKNGKMDEASRLLDLMIQHG----VRP-DA 204 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 204 (487)
+++.+...|...|++++|+..|+++.+ .... + ...++..+...|...|++++|+..+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 444444444444444444444444431 1000 0 01234444444455555555555444443211 000 13
Q ss_pred HHHHHHHHHHHcCCCHhHH-HHHHHHH
Q 011362 205 FTYNTLLDGFCLTGRVNHA-KELFVSM 230 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a-~~~~~~~ 230 (487)
.++..+..++...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444445555555555555 4434443
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.85 E-value=3.5e-07 Score=78.96 Aligned_cols=171 Identities=11% Similarity=0.015 Sum_probs=127.0
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC---CC
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN-----VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ---PN 168 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 168 (487)
.....+...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|+..+++....... +.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3456666777788888888888888887766543221 123445667778888999999999988754221 11
Q ss_pred --hhhHHHHHHHHHhCCChHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC----CC
Q 011362 169 --VVTFNVIMDELCKNGKMDEASRLLDLMIQ---H-GVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG----CK 236 (487)
Q Consensus 169 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~ 236 (487)
..+++.+...|...|++++|...++++.+ . +..+ ...++..+...|...|++++|...+++..+.. ..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 34788899999999999999999998873 2 1111 12588899999999999999999999876542 11
Q ss_pred C-CHhhHHHHHHHHHccCCHhHH-HHHHHHHHH
Q 011362 237 H-TVFSYSILINGYCKNKEIEGA-LSLYSEMLS 267 (487)
Q Consensus 237 ~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 267 (487)
. -..++..+..+|.+.|++++| ...+++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 156788999999999999999 777887664
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=2.5e-07 Score=77.25 Aligned_cols=196 Identities=11% Similarity=-0.043 Sum_probs=143.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHccCChHHHHHHHHHHHhCCCC-----C---c----cc-
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTL-------VNGLCRTSHTIVALNLFEEMANGNGE-----F---G----VV- 94 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~-----~---~----~~- 94 (487)
..++...|.+.|.++.+.. +.....|..+ ..++.+.++..+++..+.......+. + | +.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 6899999999999999985 5566778877 56666666677777777766653211 0 0 00
Q ss_pred -cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhh
Q 011362 95 -CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN--VVT 171 (487)
Q Consensus 95 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 171 (487)
+.........+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 11123456677888999999999999999887654 433366667778899999999999998654431 111 235
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 172 FNVIMDELCKNGKMDEASRLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 172 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788899999999999999999875433243 3456677788889999999999999998874
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=6.6e-08 Score=76.46 Aligned_cols=123 Identities=7% Similarity=0.048 Sum_probs=95.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH-HHh
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG-LCK 111 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 111 (487)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|+..|+++.+.. |.+...+..+..+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLYYQ 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHh
Confidence 345788888988888888765 5567788888888899999999999999888765 5567788888888 778
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 112 EGFV--DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 112 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
.|++ ++|...++++.... +.+...+..+..++...|++++|...|+++.+..
T Consensus 92 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888 89999998887763 3356778888888888999999999998888763
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=2.4e-08 Score=75.69 Aligned_cols=111 Identities=12% Similarity=-0.047 Sum_probs=89.6
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..|+.++... |.+...+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++....
T Consensus 5 ~~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555553 3356677778888999999999999999998875 5677788889999999999999999999998876
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|.+...+..+..++...|++++|...|+...+.
T Consensus 83 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 -------INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp -------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667788888999999999999999999988765
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.84 E-value=2.7e-08 Score=75.87 Aligned_cols=111 Identities=8% Similarity=-0.075 Sum_probs=85.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHH
Q 011362 44 ALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLL 123 (487)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 123 (487)
..|+++.... +.+...+..+...+...|++++|+..|+++.... |.+...|..+..++...|++++|+..|+
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455555542 3345567777888888888888888888888765 5677888888888888888888888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 124 QMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
+..... +.+...+..+..++...|++++|...|++..+.
T Consensus 80 ~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887763 336677888888888888888888888888765
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=1e-07 Score=71.08 Aligned_cols=119 Identities=6% Similarity=-0.066 Sum_probs=79.2
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011362 342 FDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLI 421 (487)
Q Consensus 342 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 421 (487)
.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345566667777777777777777777776542 3356667777777777777777777777777643 22566677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 422 RGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
.++...|++++|.+.+++..+.. +.+...+..+..++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777777777777777777643 233455555655555544
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.83 E-value=5.6e-06 Score=71.25 Aligned_cols=225 Identities=9% Similarity=-0.065 Sum_probs=140.4
Q ss_pred HHhcCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 33 LCAESRIM-EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH----------TIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 33 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
..+.|+++ +|+.+++.++..+ +.+..+|+.-..++...+. +++++.+++.+...+ |.+..+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------PKny~a 110 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGT 110 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-------CCCHHH
Confidence 34556655 6778887777764 3444555544433333332 567778888777765 566677
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011362 102 YTTIIDGLCKEG--FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD-WNEAKRLFIEMMDQGVQPNVVTFNVIMDE 178 (487)
Q Consensus 102 ~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (487)
|+.-..++...| .++++++.++.+.+.. +-|..+|+.-..++...|. ++++++.++++++..+. |...|+.....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 776666666666 3677888888777764 3366777776666666676 47778888777776544 56666655544
Q ss_pred HHhC--------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-----------CCHhHHHHHHHHHHHc
Q 011362 179 LCKN--------------GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT-----------GRVNHAKELFVSMESM 233 (487)
Q Consensus 179 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~ 233 (487)
+... +.++++++.+.......+ -|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4433 346777788777776533 3666666544444443 3467888888888876
Q ss_pred CCCCCHhhHHHHHHH---HHccCCHhHHHHHHHHHHHCC
Q 011362 234 GCKHTVFSYSILING---YCKNKEIEGALSLYSEMLSKG 269 (487)
Q Consensus 234 ~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 269 (487)
. |.+...+..++.. ....+..+++...+.++.+.+
T Consensus 268 ~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 268 E-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp C-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred C-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4 3333333333222 224567778888888888753
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.83 E-value=6.4e-08 Score=71.52 Aligned_cols=113 Identities=8% Similarity=-0.004 Sum_probs=86.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
..++..++..+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.+++..+..+........-..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567889999999999999999999999885 567788999999999999999999999998875421100001112467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYT 138 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 138 (487)
..+..++...|++++|++.|++.+.. .|+.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 77888888888888888888887764 35655443
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=1.4e-07 Score=69.47 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=65.1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011362 344 IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRG 423 (487)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (487)
...+..+...+...|++++|...++++.... +.+..++..++.++...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555556666666666666666655432 3344556666666666666666666666665542 2245556666666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 424 FIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (487)
+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 666666666666666666543 233444444444443
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.4e-07 Score=69.65 Aligned_cols=98 Identities=14% Similarity=-0.001 Sum_probs=74.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...|..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..+++..+.. |.+...+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHH
Confidence 4556777777888888888888888877764 4566777778888888888888888888877765 5567777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77888888888888888888777664
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.80 E-value=9.6e-09 Score=83.07 Aligned_cols=120 Identities=14% Similarity=0.025 Sum_probs=57.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV----------------FTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
..+..+...+...|++++|+..|+++..... .+. .++..+..++...|++++|+..++++.+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555555566666666666666554321 111 34444445555555555555555555543
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhh
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNE 152 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (487)
. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++..+
T Consensus 118 ~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 118 D-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp S-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred C-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 3 3344445555555555555555555555544432 1233344444444444433333
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=1.8e-07 Score=69.48 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR 426 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (487)
+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3333444444444444444444433321 2233344444444444444444444444444321 1123344444444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 427 INEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
.|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 444444444444444432 223333444444444433
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.76 E-value=4.2e-07 Score=66.00 Aligned_cols=110 Identities=8% Similarity=-0.054 Sum_probs=78.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
+..+..++..+...|++++|+..|+++.... +.+...+..+...+...|++++|...+++..+.. |.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cccHHHH
Confidence 4556777777888888888888888877764 4466677777778888888888888888877754 4556777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVI 141 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 141 (487)
..+..++...|++++|.+.+++..+.+ +.+...+..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 777778888888888888887777653 22444444433
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=1.4e-07 Score=67.85 Aligned_cols=99 Identities=14% Similarity=0.010 Sum_probs=70.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc--ch
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP--NT 99 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~ 99 (487)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..+++..+.. +. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-------EDEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CCTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccchH
Confidence 45566667777777777777777777777664 4456667777777777777777777777777654 34 56
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 011362 100 VTYTTIIDGLCKE-GFVDKAKELLLQMKDK 128 (487)
Q Consensus 100 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 128 (487)
..+..+..++... |++++|.+.++.....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6777777777777 7777777777777665
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=1.5e-05 Score=68.58 Aligned_cols=237 Identities=9% Similarity=0.012 Sum_probs=166.1
Q ss_pred HccCChH-HHHHHHHHHHhCCCCCccccccchHHHHHHHH-HHHh-------cCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 69 CRTSHTI-VALNLFEEMANGNGEFGVVCEPNTVTYTTIID-GLCK-------EGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 69 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
.+.|.+. +|+.+++.+...+|+ ..++..+...+- .... ...+++++.+++.+.... +-+..+|+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3455554 789999999888864 344555443322 2222 235789999999998874 347888888
Q ss_pred HHHHHHhcC--ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 140 VIRGFCYAK--DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK-MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 140 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
-..++...+ .+++++..++.+.+..+. +...|+.-.-.+...|. +++++..++.+++..+. |...|+.....+..
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 877777777 489999999999987544 77778777777778888 58999999999987544 77777776665554
Q ss_pred C--------------CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-----------CCHhHHHHHHHHHHHCCCc
Q 011362 217 T--------------GRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN-----------KEIEGALSLYSEMLSKGIK 271 (487)
Q Consensus 217 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 271 (487)
. +.++++++.+....... |.|...|+.+-..+.+. +.++++++.+.++.+..
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-- 268 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-- 268 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--
Confidence 4 45788999999988775 67788887665555554 45789999999999854
Q ss_pred cChhhHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 011362 272 PDVVIHNTLFV-----GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDG 318 (487)
Q Consensus 272 ~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (487)
|+. .|..+.. .....+..+++...+.++.+.+ |....-|..+...
T Consensus 269 pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~ 318 (331)
T 3dss_A 269 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSK 318 (331)
T ss_dssp TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHH
T ss_pred ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHH
Confidence 343 3332222 2224677889999999998853 3334445554443
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=2.3e-07 Score=81.69 Aligned_cols=129 Identities=14% Similarity=-0.083 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--------------hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFD--------------IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLV 376 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 376 (487)
.+..+...+.+.|++++|...|++......... ..++..+..+|.+.|++++|...++++++.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444445555555555555555544331111 4667777777777788888888777777653 4
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKV-IELLHKMK 441 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 441 (487)
.+...|..+..+|...|++++|...|+++++... .+...+..+..++...|+.++| ...+++|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888888888888776532 2456677777777777777776 44555554
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.71 E-value=1.3e-07 Score=69.93 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV--VPN----VITFDML 420 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 420 (487)
+..++..+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4445555555555555555555555432 33345555555566666666666666655543210 011 1244555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 421 IRGFIRINEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
..++...|++++|++.|++.++. .|++.+...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 56666666666666666666652 355544433
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.70 E-value=1e-07 Score=72.13 Aligned_cols=99 Identities=8% Similarity=-0.095 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
+...+..+...+...|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++....+ +.+...
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHH
Confidence 34456677778888888888888888888765 5677888888888888888888888888887764 346677
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
+..+..++...|++++|...|+...+.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888888888888765
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.70 E-value=4.7e-07 Score=67.93 Aligned_cols=101 Identities=14% Similarity=-0.016 Sum_probs=88.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.+...|..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|+..++++.+.. |.+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------chhH
Confidence 4467888999999999999999999999998875 5567888899999999999999999999998876 5678
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..+..+..++...|++++|...|++....
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88999999999999999999999888764
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.69 E-value=1.7e-07 Score=69.65 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=91.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc----
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN---- 98 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 98 (487)
...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...++++.... +.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-------RENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------HHSTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-------cccchhH
Confidence 5668889999999999999999999999875 5577888899999999999999999999988754 222
Q ss_pred ---hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011362 99 ---TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG 143 (487)
Q Consensus 99 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 143 (487)
...+..+..++...|++++|.+.|+...+. .|+......+..+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 677888889999999999999999988875 3465555554443
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.68 E-value=2.9e-08 Score=80.16 Aligned_cols=157 Identities=11% Similarity=-0.073 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc---------
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN--------- 98 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 98 (487)
..+......|+++++.+.|+.-.... ......+..+...+...|++++|+..|++..+..+.... ...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~ 85 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE--WDDQILLDKKKN 85 (198)
T ss_dssp -------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT--CCCHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc--cchhhHHHHHHH
Confidence 34445556677777777776433221 223456778888999999999999999999986521000 000
Q ss_pred --hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 99 --TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 99 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.... +...+..+.
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 163 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHH
Confidence 2667777777777788888888777777653 335667777777777777777777777777665322 444555555
Q ss_pred HHHHhCCChHHHH
Q 011362 177 DELCKNGKMDEAS 189 (487)
Q Consensus 177 ~~~~~~~~~~~a~ 189 (487)
.++...++..++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.68 E-value=4.4e-07 Score=70.58 Aligned_cols=99 Identities=10% Similarity=-0.021 Sum_probs=82.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...|..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..|++..+.. +.+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------PKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHH
Confidence 46677888888889999999999999888875 4567788888888888999999999998888876 566788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|..+..++...|++++|...|++..+.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888888888999888888888765
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=4.6e-07 Score=66.85 Aligned_cols=92 Identities=13% Similarity=-0.039 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc
Q 011362 313 RTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND 392 (487)
Q Consensus 313 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (487)
......+.+.|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 333344444444444444444444332 2333444444444444444444444444443321 22233444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 011362 393 GQMDKARDLFLDME 406 (487)
Q Consensus 393 g~~~~A~~~~~~~~ 406 (487)
|++++|...|++..
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 44444444444443
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.67 E-value=7.2e-08 Score=70.15 Aligned_cols=87 Identities=9% Similarity=-0.059 Sum_probs=74.0
Q ss_pred CCccchHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011362 1 MGRVSHGFVVLGRILKSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
.|++++|+..|+++++.+ .|.+..++..+..+|...|++++|+..|+++++.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 489999999999999974 23457789999999999999999999999999885 556788899999999999999999
Q ss_pred HHHHHHHhCC
Q 011362 79 NLFEEMANGN 88 (487)
Q Consensus 79 ~~~~~~~~~~ 88 (487)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999998864
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.4e-06 Score=66.28 Aligned_cols=99 Identities=11% Similarity=-0.067 Sum_probs=72.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCE 96 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 96 (487)
.+...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|+..+++..+.. +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~ 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------G 96 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------S
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------c
Confidence 35666777777788888888888888887765 344 4566677777777888888888887777654 4
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.+...+..+..++...|++++|...|++....
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45667777777777777777777777777665
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=3.2e-07 Score=67.03 Aligned_cols=96 Identities=9% Similarity=-0.070 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.. |.+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 45667888899999999999999999875 5578888999999999999999999999999876 567888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+..++...|++++|+..+++..+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998875
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=9e-07 Score=64.18 Aligned_cols=96 Identities=11% Similarity=-0.038 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011362 346 AYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFI 425 (487)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (487)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444445555555555555555554431 2234455555555555555555555555555432 123445555555555
Q ss_pred hcCChhHHHHHHHHHHhc
Q 011362 426 RINEPSKVIELLHKMKEI 443 (487)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~ 443 (487)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 566666666666555543
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=5.3e-07 Score=64.70 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CH
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP--NV 134 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~ 134 (487)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+++..+.. +. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchH
Confidence 34456667777777777777777777777654 4556677777777777777777777777776652 23 46
Q ss_pred hhHHHHHHHHHhc-CChhhHHHHHHHHHHcC
Q 011362 135 VTYTSVIRGFCYA-KDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 135 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 164 (487)
..+..+..++... |++++|.+.+++.....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 6677777777777 77777777777776653
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.62 E-value=6.1e-08 Score=89.25 Aligned_cols=143 Identities=11% Similarity=-0.034 Sum_probs=91.4
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--------------VFTYTTLVNGL 68 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 68 (487)
++++|+..|+..+... +.....|..+...+.+.|++++|+..|+++++...... ..+|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544432 22466788889999999999999999999987642211 35566666667
Q ss_pred HccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011362 69 CRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK 148 (487)
Q Consensus 69 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 148 (487)
.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.+
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 77777777777777766654 4556666666677777777777777777666552 224455666666666666
Q ss_pred ChhhHH
Q 011362 149 DWNEAK 154 (487)
Q Consensus 149 ~~~~a~ 154 (487)
+.+++.
T Consensus 400 ~~~~a~ 405 (457)
T 1kt0_A 400 EHNERD 405 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.2e-06 Score=65.08 Aligned_cols=113 Identities=11% Similarity=0.001 Sum_probs=81.7
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011362 342 FDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN----VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITF 417 (487)
Q Consensus 342 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 417 (487)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35566777777788888888888888887765 344 5677778888888888888888888887753 2256677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 418 DMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDL 458 (487)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (487)
..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 778888888888888888888888754 3334444444443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.4e-06 Score=79.95 Aligned_cols=194 Identities=6% Similarity=-0.095 Sum_probs=126.9
Q ss_pred CccchHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCH----HH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDA----------------VTFTSLIKGLCAESRIMEAAALFTKLRVFGCE-PDV----FT 60 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~ 60 (487)
|++++|++.|..+++....... .++..++..|...|++++|.+.+..+...-.. ++. .+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 7899999999999987643221 24677899999999999999999987654211 111 12
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CC---CCCHh
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK--NI---KPNVV 135 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~ 135 (487)
.+.+...+...|+++.|..+++.........+. ......++..++..+...|++++|..+++.+... +. +....
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR-VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 333444555678899998888876543210000 1223567778888888889999998888876542 11 11244
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC--CC-C-C--hhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQG--VQ-P-N--VVTFNVIMDELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 196 (487)
++..+++.|...|++++|..++++..... .. | . ...+..+...+...+++++|...|....
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 67777888888888888888887765421 11 1 1 1234445555666777777776665554
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=1.5e-06 Score=67.47 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHH
Confidence 34566777777788888888888888877765 5567777888888888888888888888877763 335677
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
|..+..++...|++++|...|++..+.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777888888888888888888877765
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=3.8e-07 Score=66.63 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=77.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+++++.. |.+...|..+..++...|++++|+..|+++++.. +.+...+..+..++...|++++|+..
T Consensus 30 ~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999999986 5589999999999999999999999999999885 55677899999999999999999999
Q ss_pred HHHHHhCC
Q 011362 81 FEEMANGN 88 (487)
Q Consensus 81 ~~~~~~~~ 88 (487)
++++.+..
T Consensus 108 ~~~al~~~ 115 (121)
T 1hxi_A 108 LRAWLLSQ 115 (121)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhC
Confidence 99998865
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=2.9e-06 Score=62.68 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc---h
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV---FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN---T 99 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~ 99 (487)
+..+...+...|++++|+..|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.. |.+ .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------PTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------CCCcccH
Confidence 4456677778888888888888887764 2233 466677778888888888888888877754 333 5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..+..+..++...|++++|...|+.+...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777788888888888888877765
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=4.6e-06 Score=76.52 Aligned_cols=201 Identities=10% Similarity=-0.069 Sum_probs=129.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcc
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPD----------------VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGV 93 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 93 (487)
.+.+...|++++|++.|..+.+...... ..++..++..|...|++++|.+.+..+....+..+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 5677899999999999999987642211 124677889999999999999999887654311000
Q ss_pred ccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--
Q 011362 94 VCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-- 166 (487)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 166 (487)
......+.+.+...+...|+.+.|..+++..... +..+ ...++..+...+...|++++|..++.++...-..
T Consensus 91 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 -SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp -HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred -hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 0001123334444555678888888888776532 2222 2456777888888888888888888877543111
Q ss_pred --C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 167 --P-NVVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 167 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
+ ....+..+++.|...|++++|..+++..... +.++. ...+..+...+...+++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1345666777888888888888887766542 11111 2345555666667777777776665553
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.54 E-value=2.6e-07 Score=85.47 Aligned_cols=114 Identities=8% Similarity=-0.038 Sum_probs=89.4
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|++.|+++++.. |.+..+|..+..+|.+.|++++|++.++++.+.. +.+..++..+..+|...|++++|++.
T Consensus 19 ~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 478899999999999885 4468888999999999999999999999998875 55677888889999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHH--HHhcCChhHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDG--LCKEGFVDKAKELLL 123 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 123 (487)
|+++.+.. |.+...+..+..+ +.+.|++++|++.++
T Consensus 97 ~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99988865 3445556555555 777888888988887
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.54 E-value=5.7e-07 Score=66.71 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHH
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV--VPN----VITFDMLI 421 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l~ 421 (487)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .++ ..++..+.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333444444444444444444443321 22333444444444444444444444444433211 011 33444444
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 011362 422 RGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~ 442 (487)
.++...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555554
No 178
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.53 E-value=2.4e-06 Score=64.00 Aligned_cols=100 Identities=13% Similarity=-0.046 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 011362 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV 135 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 135 (487)
.+...+..+...+...|++++|+..|++..... |.+...+..+..++...|++++|...+++..+.. +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 345556666666666666666666666666654 4455666666666666666666666666666543 22455
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
.+..+..++...|++++|...|++..+.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666666665543
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=3e-06 Score=62.66 Aligned_cols=86 Identities=13% Similarity=-0.016 Sum_probs=74.3
Q ss_pred CCccchHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCh
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDA---VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 74 (487)
.|++++|+..|+.++...+ .+. .++..+..++...|++++|+..|+++.... +.+ ..++..+..++...|++
T Consensus 15 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCH
T ss_pred hCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCH
Confidence 4899999999999999753 344 578889999999999999999999999875 333 56788899999999999
Q ss_pred HHHHHHHHHHHhCC
Q 011362 75 IVALNLFEEMANGN 88 (487)
Q Consensus 75 ~~a~~~~~~~~~~~ 88 (487)
++|...|+++.+..
T Consensus 93 ~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 93 TEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999999865
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.48 E-value=1.3e-06 Score=67.51 Aligned_cols=139 Identities=10% Similarity=0.001 Sum_probs=95.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE-PD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+.....+. .+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHH
Confidence 456788888999999999999999998765211 11 136777888889999999999999887653210000 111
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
....+..+..++...|++++|.+.+++.... +.+ .....+..+...+...|++++|.+.+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2456777788888888888888888776543 111 1133566667777777777777777777654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.47 E-value=1.7e-07 Score=86.58 Aligned_cols=125 Identities=9% Similarity=-0.061 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+.+.|++++|++.|+++++.. +.+..++..+..++.+.|++++|++.++++.+.. |.+...+..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 34445666778999999999999998875 5567889999999999999999999999999876 667889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCChhhHHHHHH
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG--FCYAKDWNEAKRLFI 158 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 158 (487)
+..+|...|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999988763 2244556666655 778899999999888
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=2.8e-06 Score=65.78 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=67.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CC---------CCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVF--------GC---------EPDVFTYTTLVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
+..+......+.+.|++++|+..|++.+.. .. +.+...|..+..++.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 556788889999999999999999998875 10 1122455566666666666666666666666
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+.+ |.+...|..+..++...|++++|...|++....
T Consensus 91 ~~~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 445666666666666666666666666666654
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=3.1e-06 Score=75.32 Aligned_cols=97 Identities=12% Similarity=-0.032 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFG---------------CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..+..+...+.+.|++++|+..|+++++.- .+.+..+|..+..++.+.|++++|+..++++.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346777888888888888888888887620 01122334444444444455555555554444433
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
+.+...+..+..+|...|++++|++.|++..+
T Consensus 304 -------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 -------PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.39 E-value=7.3e-07 Score=64.72 Aligned_cols=86 Identities=14% Similarity=0.016 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC
Q 011362 36 ESRIMEAAALFTKLRVFG--CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
.|++++|+..|+++++.+ -+.+..++..+..++...|++++|+..|+++.+.. |.+...+..+..++...|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcC
Confidence 567777777777777653 12234466677777777777777777777777765 455667777777777777
Q ss_pred ChhHHHHHHHHHHhC
Q 011362 114 FVDKAKELLLQMKDK 128 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~ 128 (487)
++++|...+++....
T Consensus 76 ~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 76 RYEQGVELLLKIIAE 90 (117)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776654
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=6.9e-06 Score=61.71 Aligned_cols=99 Identities=16% Similarity=-0.012 Sum_probs=83.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CH-----HHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP------DV-----FTYTTLVNGLCRTSHTIVALNLFEEMANG---- 87 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 87 (487)
...+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4456778888999999999999999999874221 22 38899999999999999999999999986
Q ss_pred ---CCCCccccccchHHH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 88 ---NGEFGVVCEPNTVTY----TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 88 ---~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+ |.+...| .....++...|++++|+..|++..+.
T Consensus 91 ~e~~-------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELN-------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTT-------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCC-------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5 5567788 89999999999999999999998764
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=2.3e-06 Score=66.14 Aligned_cols=132 Identities=14% Similarity=0.023 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCC-cHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCE-FD----IRAYNSLIDGLCKSGRLEIALELFRSLPCG----VLVP-NVV 380 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~ 380 (487)
++..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666677777777766665532111 11 135666777777778888777777765432 1011 134
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEEN----AVVP-NVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
++..+..++...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6677778888888888888888877642 1111 134567778888899999999999888765
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=4.8e-06 Score=64.48 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...+++.++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4567777777777888888888877777653 2256677777777778888888888888777743
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.34 E-value=6.7e-06 Score=73.13 Aligned_cols=119 Identities=10% Similarity=-0.053 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcC---------------CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 011362 312 YRTFIDGLCKNGYIVEAVELFHTLRILK---------------CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLV 376 (487)
Q Consensus 312 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 376 (487)
+..+...+.+.|++++|...|+++++.. .+.+..+|..+..+|.+.|++++|...++++++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4455556666777777777766665410 02233444455555555555555555555555432 2
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSK 432 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (487)
.+...|..+..+|...|++++|+..|+++.+... .+...+..+..++...++.++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555555555555555544321 133344444444444443333
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.34 E-value=4.2e-06 Score=60.40 Aligned_cols=83 Identities=13% Similarity=-0.005 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEE 83 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 83 (487)
+++|+..|+.+++.. |.+...+..+...|...|++++|+..|+++.+.. +.+...+..+..++...|++++|...|++
T Consensus 1 ~~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 1 MQAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367899999999986 4578899999999999999999999999999875 55677899999999999999999999999
Q ss_pred HHhCC
Q 011362 84 MANGN 88 (487)
Q Consensus 84 ~~~~~ 88 (487)
..+..
T Consensus 79 al~~~ 83 (115)
T 2kat_A 79 GLAAA 83 (115)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88743
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.33 E-value=2e-06 Score=75.69 Aligned_cols=148 Identities=10% Similarity=-0.054 Sum_probs=62.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+.+.|++++|+..|++++... |+... +...|+.+++...+ ....|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------------~~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------------KNPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------------HTHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------------HHHHH
Confidence 4456777888888899999999999887753 33321 11122222221111 01345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH-HHh
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE-LCK 181 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 181 (487)
..+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+... ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 555555555555555555555555442 224455555555555555555555555555443211 22233333322 122
Q ss_pred CCChHHHHHHHHHHHH
Q 011362 182 NGKMDEASRLLDLMIQ 197 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~ 197 (487)
.+..+.+...|..+..
T Consensus 312 ~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 312 KALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3344455555555543
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.33 E-value=3.4e-06 Score=77.60 Aligned_cols=118 Identities=13% Similarity=-0.008 Sum_probs=97.6
Q ss_pred CCccchHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD--------------AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVN 66 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 66 (487)
.|++++|+..|++++...+... ..+|..+..+|.+.|++++|+..++++++.. +.+..++..+..
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~ 359 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGE 359 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 4899999999999999753322 5889999999999999999999999999986 567888999999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE-LLLQMK 126 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 126 (487)
+|...|++++|+..|+++.+.. |.+...+..+..++.+.++.+++.. .+..|.
T Consensus 360 a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 360 AQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 5677888889999988888877664 455544
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=1e-05 Score=57.76 Aligned_cols=98 Identities=7% Similarity=0.011 Sum_probs=79.5
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-------H
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPD-------A 449 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~ 449 (487)
++...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++++++.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 356678888889999999999999999998763 2367788888999999999999999999998754 44 5
Q ss_pred HHHHHHHHHHHhcccccccccccccchh
Q 011362 450 SIVSIVVDLLAKNEISLNSLPSFTVHEQ 477 (487)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 477 (487)
..+..+..++...|+..++++.+...|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 5667777888888888888888776654
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=4.5e-05 Score=71.84 Aligned_cols=172 Identities=10% Similarity=-0.049 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC----------HhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY----------IVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG-- 358 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 358 (487)
++|+..++.+...+ +.+..+|+.-..++...|+ ++++...++.+.... +.+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45555555555542 2233344444444444444 667777777776655 556666666666666666
Q ss_pred CHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------
Q 011362 359 RLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG-QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRI---------- 427 (487)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 427 (487)
+++++++.++++.+.. +-+..+|+.-..++...| .++++++.++++++..+. +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 5577777777776653 445666766666666666 677777777777765433 566666666555543
Q ss_pred ----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccc
Q 011362 428 ----NEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLN 467 (487)
Q Consensus 428 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (487)
+.++++++.++++...+ +-+...|......+.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688999999988865 5577888888888888887554
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=4.2e-05 Score=72.08 Aligned_cols=169 Identities=9% Similarity=-0.061 Sum_probs=106.8
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESR----------IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-- 72 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 72 (487)
++|++.++.++..+ |-+..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 46677777777775 3366677766666666666 777777777777765 456666776666666777
Q ss_pred ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----
Q 011362 73 HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG-FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA---- 147 (487)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 147 (487)
+++++++.++++.+.+ +.+..+|+.-..++.+.| .++++++.++++.+... -+..+|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d-------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 124 NWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHhhc-------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccc
Confidence 5577777777777766 566777777666666777 67777777777776643 3666777666555442
Q ss_pred ----------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 148 ----------KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 148 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
+.++++++.+.+++...+. +...|..+...+.+.+.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 2345555555555544322 34444444444433333
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.28 E-value=2.8e-05 Score=58.08 Aligned_cols=109 Identities=11% Similarity=-0.070 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cC
Q 011362 38 RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EG 113 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 113 (487)
++++|+++|++..+.| .++.. +...|...+..++|.++|++..+.+ ++..+..|...|.. .+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHcCCCCCc
Confidence 3444444444444443 22221 3333444444444444444444432 23444444444444 44
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHc
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 163 (487)
++++|.++|++..+.| ++..+..|...|.. .+++++|..+|++..+.
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4444554444444432 33344444444444 44445555554444443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.28 E-value=2.3e-05 Score=58.48 Aligned_cols=112 Identities=5% Similarity=-0.163 Sum_probs=96.0
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVA 77 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 77 (487)
+++++|++.|+.+.+.+ .++.. |...|...+.+++|+++|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 36789999999999987 33333 7888888889999999999998864 67788888888888 8999999
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNI 130 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 130 (487)
..+|++..+.+ ++..+..|...|.. .++.++|..+|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999865 57888889999988 8999999999999998863
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=1e-06 Score=63.23 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=73.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc---
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN--- 98 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--- 98 (487)
+...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..+++..+.. |.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-------STAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------SSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCccHH
Confidence 45677888889999999999999999988875 5567788888899999999999999999998865 333
Q ss_pred ---hHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 99 ---TVTYTTIIDGLCKEGFVDKAKELLLQ 124 (487)
Q Consensus 99 ---~~~~~~l~~~~~~~g~~~~a~~~~~~ 124 (487)
...+..+..++...|+.+.|...+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 55666667777777766666555443
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.24 E-value=3.7e-06 Score=73.99 Aligned_cols=119 Identities=9% Similarity=-0.041 Sum_probs=59.8
Q ss_pred CCccchHHHHHHHHHhCCCCCCH-----------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDA-----------------VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTT 63 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 63 (487)
.|++++|+..|++++... +.+. .+|..+..+|.+.|++++|+..++++++.. +.+...+..
T Consensus 192 ~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 269 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYM-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFR 269 (338)
T ss_dssp SSCCHHHHHHHHHHHHHS-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHh-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 488999999999999874 2122 256667777777777777777777776654 345666777
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH-HHhcCChhHHHHHHHHHHhC
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG-LCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 128 (487)
+..+|...|++++|+..|+++.+.. |.+...+..+... ....+..+.+...|..+...
T Consensus 270 lg~a~~~~g~~~~A~~~l~~al~l~-------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 270 RGKAKAELGQMDSARDDFRKAQKYA-------PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7777777777777777777776654 3344444444444 22334455566666665543
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.24 E-value=4.1e-06 Score=62.76 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=80.8
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRI----------MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT 71 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (487)
+++++|++.+++.++.. |.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 56899999999999997 55899999999999998875 49999999999986 55677899999999877
Q ss_pred C-----------ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 72 S-----------HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 72 g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
| ++++|++.|++..+.+ |+...|...+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~--------P~~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 4 8999999999999954 665555555443
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=8.7e-06 Score=61.16 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=74.7
Q ss_pred CCccchHHHHHHHHHhCCCCC------CH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHH-
Q 011362 1 MGRVSHGFVVLGRILKSCFTP------DA-----VTFTSLIKGLCAESRIMEAAALFTKLRVF-------GCEPDVFTY- 61 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~- 61 (487)
.|++++|+..|+.+++..+.. +. .+|..+..++...|++++|+..+++.++. . +.+...|
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~ 102 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWI 102 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHH
Confidence 389999999999999986431 23 38999999999999999999999999986 5 4456678
Q ss_pred ---HHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 62 ---TTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 62 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
.....++...|++++|+..|++..+..
T Consensus 103 ~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 103 SAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999998754
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.22 E-value=1.3e-05 Score=54.78 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=71.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+.. |.+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~ 79 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCHHH
Confidence 46778889999999999999999999999875 5567788999999999999999999999999865 556777
Q ss_pred HHHHHHHHHhcC
Q 011362 102 YTTIIDGLCKEG 113 (487)
Q Consensus 102 ~~~l~~~~~~~g 113 (487)
+..+..++...|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 777777766543
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=4.2e-06 Score=76.81 Aligned_cols=127 Identities=7% Similarity=-0.118 Sum_probs=93.2
Q ss_pred CCccchHHHHHHHHHhCCCC---C----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFT---P----DAVTFTSLIKGLCAESRIMEAAALFTKLRVF-----GC-EPD-VFTYTTLVN 66 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~ 66 (487)
.|++++|+.++++++..... + ...+++.|+..|...|++++|..++++.+.. |. .|+ ..+++.|..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 48999999999998765311 1 2567899999999999999999999998754 21 233 346889999
Q ss_pred HHHccCChHHHHHHHHHHHhCCC-CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 67 GLCRTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
.|..+|++++|+.++++...... .+|...|....+...+..++...+.+++|+.+|..+++
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764221 01111233445566777777788888888888888765
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=7.6e-06 Score=75.13 Aligned_cols=131 Identities=7% Similarity=-0.084 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCccccccchHHHH
Q 011362 32 GLCAESRIMEAAALFTKLRVF-----GC-EPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTYT 103 (487)
Q Consensus 32 ~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 103 (487)
.+..+|++++|+.++++.++. |. .|+ ..+++.|+.+|...|++++|+.++++...... .+|...|....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356889999999999998765 21 122 34688999999999999999999988765321 01111244456789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK-----N--IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
.|...|...|++++|+.++++.... | .+....+...+..++...+.+++|+.+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887542 2 122233455666777778888888888887765
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.03 E-value=1.4e-05 Score=59.85 Aligned_cols=99 Identities=15% Similarity=0.003 Sum_probs=79.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh----------HHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT----------IVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++..+.+ |.+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------P~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------cCcHHHHH
Confidence 45678999999999999886 66888999899898888765 59999999999977 66788999
Q ss_pred HHHHHHHhcC-----------ChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 104 TIIDGLCKEG-----------FVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 104 ~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.+..+|...| ++++|++.|++..+. .|+...|...+.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 9999998875 788888888888775 455554444333
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.00 E-value=4e-05 Score=55.14 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHH
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE 120 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 120 (487)
+|+..|+++.+.. +.+...+..+...+...|++++|+..|++..+.. |.+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777888887764 5567788888888999999999999999988865 5567788888888889999999999
Q ss_pred HHHHHHhC
Q 011362 121 LLLQMKDK 128 (487)
Q Consensus 121 ~~~~~~~~ 128 (487)
.|++....
T Consensus 75 ~~~~al~~ 82 (115)
T 2kat_A 75 AWESGLAA 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887654
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.97 E-value=3.8e-05 Score=53.55 Aligned_cols=67 Identities=22% Similarity=0.098 Sum_probs=59.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
|.+..++..+..+|...|++++|+..|+++++.. +.+...|..+..+|...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999999886 556778999999999999999999999998764
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=0.00016 Score=49.16 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDL 458 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (487)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666666777777777777777776543 2245566666677777777777777777776643 3344555555555
Q ss_pred HHh
Q 011362 459 LAK 461 (487)
Q Consensus 459 ~~~ 461 (487)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=0.00024 Score=49.44 Aligned_cols=67 Identities=22% Similarity=0.167 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+.+...+..+..++...|++++|+..|+++.+.. |.+...|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4466778888888889999999999999888876 556778888888888999999998888887653
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.61 E-value=0.0021 Score=55.68 Aligned_cols=137 Identities=7% Similarity=0.002 Sum_probs=72.8
Q ss_pred CCCCHHhHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----ccCCh-HH---HHHHHHHHH
Q 011362 19 FTPDAVTFTSLIKGLC--AES---RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC----RTSHT-IV---ALNLFEEMA 85 (487)
Q Consensus 19 ~~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~-~~---a~~~~~~~~ 85 (487)
.|.+..+|...+++.. ..+ +..+|+.+|+++++.. |-....+..+.-++. ..+.. .. ....++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4567778877776543 333 3578899999988874 233344444443332 10000 11 111111111
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
.... .+.++..|..+...+...|+++.|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 269 a~~~-----~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 269 TLPE-----LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCGG-----GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccc-----CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1100 24455556555555555566666666666666653 45555555566666666666666666666554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.0016 Score=56.44 Aligned_cols=75 Identities=9% Similarity=0.036 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 376 VPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.++++... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 4566777777777777788999999988888864 67777777788888889999999888888874 466665543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.51 E-value=0.0004 Score=62.65 Aligned_cols=85 Identities=7% Similarity=-0.125 Sum_probs=68.4
Q ss_pred CccchHHHHHHHHHhCC---CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCH-HHHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSC---FTPD----AVTFTSLIKGLCAESRIMEAAALFTKLRVF-----G-CEPDV-FTYTTLVNG 67 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~ 67 (487)
|++++|..++++++... ..|+ ..+++.|..+|...|++++|+.++++++.. | -.|+. .+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 78999999999987632 1122 567899999999999999999999998754 2 12333 368899999
Q ss_pred HHccCChHHHHHHHHHHHh
Q 011362 68 LCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~ 86 (487)
|..+|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999998765
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.40 E-value=0.0018 Score=44.62 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
....+...|++++|+..|+++.+.. +.+.. .+..+..++...|++++|++.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667888999999999999998875 45667 88888999999999999999999998866
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.36 E-value=0.0027 Score=43.07 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=59.7
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 20 TPDAVTFTSLIKGLCAESR---IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+.++..+..+..++...++ .++|..++++.++.. +.++.....+...+...|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5678889999998876555 799999999999986 6678888899999999999999999999999976
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.31 E-value=0.03 Score=46.52 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC-CCh
Q 011362 115 VDKAKELLLQMKDKNIKPN---VVTYTSVIRGFCY-----AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-GKM 185 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 185 (487)
...|...+++..+. .|+ ...|..+...|.. .|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45777788888775 344 5578888888888 499999999999999875443467777788888774 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 011362 186 DEASRLLDLMIQHGVR--PDAFTYNT 209 (487)
Q Consensus 186 ~~a~~~~~~~~~~~~~--~~~~~~~~ 209 (487)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999988665 55444443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.28 E-value=0.00048 Score=47.65 Aligned_cols=76 Identities=8% Similarity=0.051 Sum_probs=58.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAV-TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+..|+.+++.. |.+.. .+..+..++...|++++|+..|+++.+.. +.+...+.. +.+.++..
T Consensus 13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~~~~~a~~ 82 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------KMVMDILN 82 (99)
T ss_dssp HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------HHHHHHHH
Confidence 378999999999999986 44777 89999999999999999999999999875 333333321 44556666
Q ss_pred HHHHHHh
Q 011362 80 LFEEMAN 86 (487)
Q Consensus 80 ~~~~~~~ 86 (487)
.|++...
T Consensus 83 ~~~~~~~ 89 (99)
T 2kc7_A 83 FYNKDMY 89 (99)
T ss_dssp HHCCTTH
T ss_pred HHHHHhc
Confidence 6655443
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.002 Score=58.20 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=74.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCC-CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCHh
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--IKPNVV 135 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~ 135 (487)
.+..+..+|++++|+.++++...... .+|...+....+++.++.+|...|++++|+.++++.+.. | .+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34556688999999999999887542 233223444678899999999999999999999887642 2 122344
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 678888999999999999998888765
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.002 Score=47.69 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=50.2
Q ss_pred HHHHHHHhccCCCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 011362 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDG---QMDKARDLFLDMEENAVVP--NVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
.+.+-|.+....+ +++..+...+.+++++.+ ++++++.+++...+.. .| +...+-.+.-+|.+.|++++|++.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444444443333 356666666666777666 4556777777666643 23 234444555666777777777777
Q ss_pred HHHHHhcCCCCCHHHH
Q 011362 437 LHKMKEINVMPDASIV 452 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~ 452 (487)
++.+++ +.|+..-.
T Consensus 94 ~~~lL~--ieP~n~QA 107 (152)
T 1pc2_A 94 VRGLLQ--TEPQNNQA 107 (152)
T ss_dssp HHHHHH--HCTTCHHH
T ss_pred HHHHHh--cCCCCHHH
Confidence 777776 34554333
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.21 E-value=0.0024 Score=47.26 Aligned_cols=83 Identities=13% Similarity=-0.061 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAES---RIMEAAALFTKLRVFGCEP--DVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
...+.+.|...+..+. ++..+...+..++.+.+ ++++++.+++.+.+.+ .| ....+..+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4567788888888774 68888888999999988 6779999999999875 34 3556777888899999999999
Q ss_pred HHHHHHHhCC
Q 011362 79 NLFEEMANGN 88 (487)
Q Consensus 79 ~~~~~~~~~~ 88 (487)
+.++.+.+..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999999965
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.00092 Score=60.33 Aligned_cols=93 Identities=5% Similarity=-0.137 Sum_probs=66.7
Q ss_pred ccCChHHHHHHHHHHHhCCC-CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCHhhHHHHH
Q 011362 70 RTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--IKPNVVTYTSVI 141 (487)
Q Consensus 70 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 141 (487)
..|++++|+.++++...... .+|...+....+++.|+.+|...|++++|+.++++.+.. | .+-...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999999888765321 122222334577888999999999999999988887542 2 112244678888
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 011362 142 RGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~ 162 (487)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888998888888888754
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.0028 Score=57.31 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---CCCC----cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 011362 351 IDGLCKSGRLEIALELFRSLPCG---VLVP----NVVTYSIMIGGLCNDGQMDKARDLFLDMEEN-----A-VVPN-VIT 416 (487)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~ 416 (487)
+..+...|++++|..++++.... -+.| ...+++.++.+|...|++++|+.++++++.- | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678888888888776532 1122 2357788888888888888888888877531 2 1122 356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh---cCCCCCHHHHHHH
Q 011362 417 FDMLIRGFIRINEPSKVIELLHKMKE---INVMPDASIVSIV 455 (487)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l 455 (487)
++.|...|...|++++|..+++++++ .-..|+......+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 77888888888888888888888763 2233554444333
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.10 E-value=0.0055 Score=42.70 Aligned_cols=67 Identities=13% Similarity=-0.041 Sum_probs=56.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFG------CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+..-+..|+..+...|++..|+.+|+.+.+.. ..+...++..+..++.+.|+++.|+..++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45566789999999999999999999988752 13456688899999999999999999999999865
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.10 E-value=0.0049 Score=41.77 Aligned_cols=66 Identities=12% Similarity=-0.016 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 56 PDVFTYTTLVNGLCRTSH---TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.++..+..+..++...++ .++|..++++..+.+ |.++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444455555555443333 455666666655554 445555555555555566666666666655554
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.1 Score=39.72 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=82.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~~~L~~Ly~ 71 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------FDKLSFLYL 71 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------HHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------HHHHHHHHH
Confidence 4456778888888887665 3567788888888888888888888887543 334455566
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHH
Q 011362 111 KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 111 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (487)
..|+.+...++-+.....| -++.....+...|+++++.++|.+.-+ -|. ........|..+.|.+
T Consensus 72 ~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~ 136 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASA 136 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHH
Confidence 6777777666655555443 244455556667888888888755432 111 1112223555667777
Q ss_pred HHHHH
Q 011362 191 LLDLM 195 (487)
Q Consensus 191 ~~~~~ 195 (487)
+.+.+
T Consensus 137 ~~~~~ 141 (177)
T 3mkq_B 137 FLEQA 141 (177)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76654
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.091 Score=52.32 Aligned_cols=47 Identities=15% Similarity=-0.057 Sum_probs=23.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcccc--cccccccc
Q 011362 422 RGFIRINEPSKVIELLHKMKEINVMPDA----SIVSIVVDLLAKNEIS--LNSLPSFT 473 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~--~~~~~~~~ 473 (487)
+.|.+.+++++|..+-+. ..|.. .+.......+...|+. .+++..+.
T Consensus 757 ~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~ 809 (814)
T 3mkq_A 757 DLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNTVSERVCGAE 809 (814)
T ss_dssp HHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGG
T ss_pred HHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchhHHHhhCCcc
Confidence 334444445555444432 23444 5555666667777753 55555443
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.77 E-value=4.9e-05 Score=67.09 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=63.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
.+.+|..|..++...++..+|++.|=+ ..|+..|..++.+..+.|.+++-+..+.-..+.. .++..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--------ke~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--------CSTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------ccccc
Confidence 355677777777777777777665532 2244456667777777777777777776555432 22333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
=+.|+-+|++.++..+..+.+ . .|+..-...+..-|...|.++.|.-+|.
T Consensus 119 DteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 345666666666654433322 1 1333333444444444554444444443
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.63 E-value=0.077 Score=52.82 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 011362 173 NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN 252 (487)
Q Consensus 173 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (487)
..++..+.+.|..+.|+++.+. .. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555566666665554421 10 0122234456666666654322 2445666666666666
Q ss_pred CCHhHHHHHHHHH
Q 011362 253 KEIEGALSLYSEM 265 (487)
Q Consensus 253 ~~~~~a~~~~~~~ 265 (487)
++++.|.++|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666666666654
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.62 E-value=0.016 Score=48.15 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=71.5
Q ss_pred ccchHHHHHHHHHhCCCCC-CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-CChH
Q 011362 3 RVSHGFVVLGRILKSCFTP-DAVTFTSLIKGLCA-----ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT-SHTI 75 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 75 (487)
....|+..++++++.++.- +-.+|..+...|.. -|+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4568999999999986321 36689999999998 499999999999999986333477788888888885 9999
Q ss_pred HHHHHHHHHHhCC
Q 011362 76 VALNLFEEMANGN 88 (487)
Q Consensus 76 ~a~~~~~~~~~~~ 88 (487)
++.+.+++....+
T Consensus 258 ~a~~~L~kAL~a~ 270 (301)
T 3u64_A 258 GFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999976
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.55 E-value=0.033 Score=38.64 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=32.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEENA------VVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
...++..+...|++..|...|+.+.+.. -.+....+..+..++.+.|+++.|...++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445555555555555555555554320 112344555555666666666666666666655
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.52 E-value=0.025 Score=41.30 Aligned_cols=117 Identities=17% Similarity=0.077 Sum_probs=73.9
Q ss_pred CCChHhHHHHHHHHHhcCCH------HHHHHHHHhccCCCCCCcHH-HHHHHHH------HHHccCCHHHHHHHHHHHHh
Q 011362 341 EFDIRAYNSLIDGLCKSGRL------EIALELFRSLPCGVLVPNVV-TYSIMIG------GLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 407 (487)
+.|+.+|-..+....+.|++ ++..++|+++... ++|+.. .|...+. .+...+++++|..+|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555555555555555666 6666666665543 344321 1111111 12334799999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 408 NAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (487)
.+-.. ...|......-.+.|+...|.+++.+.+..+. .+...+...+.-+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~-k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA-VPLEMLEIALRNLN 139 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BCHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CcHHHHHHHHHhhh
Confidence 53333 77777777777899999999999999998773 34555555555443
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.21 Score=37.99 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=89.3
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF 144 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 144 (487)
+......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly 70 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLY 70 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHH
Confidence 34456789999999887765 2467899999999999999999999887653 44566667
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHH
Q 011362 145 CYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 224 (487)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (487)
...|+.+...++-+.....| -++....++.-.|+++++.++|... |..|... ......|..+.|.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAAS 135 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHH
Confidence 77888877776665555443 2566666777889999998888554 3222221 1122356677777
Q ss_pred HHHHHH
Q 011362 225 ELFVSM 230 (487)
Q Consensus 225 ~~~~~~ 230 (487)
++.+.+
T Consensus 136 ~~~~~~ 141 (177)
T 3mkq_B 136 AFLEQA 141 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777665
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.30 E-value=0.1 Score=38.11 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 288 HQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
++.++|.++|+.+++.+-.- ...+....+.-.++|+...|.+++...+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 44455555555544332111 3333333444445555555555555555443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.29 E-value=0.032 Score=39.66 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 377 PNVVTYSIMIGGLCNDGQMDK---ARDLFLDMEENAVVP--NVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
|+..+-..+.+++.+..+... ++.+++...+.+ .| .....-.|.-++.+.|++++|++.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 444444444432 11 122223334445555555555555555554
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.08 E-value=1.5e-06 Score=76.30 Aligned_cols=265 Identities=12% Similarity=0.125 Sum_probs=166.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
.+..|..|..+....++..+|++.|- +. -|+..|..++....+.|.+++-.+.+....+..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 35678888888888888887776652 22 1566788888888888999988888876665432 3444467888
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG 257 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (487)
+|++.++..+..+++. .|+..-......-|...|.++.|.-+|..+. -|..|..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHH
Confidence 8888888766554442 3455556667777888888887777664432 23445555666777766
Q ss_pred HHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 011362 258 ALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 258 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 337 (487)
|.+.-++ ..++.+|..+-.+|...+.+.-|...--.+.-. ++ -+..++..|...|.+++-+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 6544322 236667888777887777776655443333321 11 233455667777888887777777764
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCC------cHHHHHHHHHHHHccCCHHHHH
Q 011362 338 LKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG-VLVP------NVVTYSIMIGGLCNDGQMDKAR 399 (487)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~ 399 (487)
.. ....-.|+.|.-.|++- ++++-.+.++..-.. +++. ....|..++..|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33 45666777777777664 455555555544321 2111 2334666666666666666554
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.08 E-value=0.043 Score=39.03 Aligned_cols=84 Identities=8% Similarity=-0.050 Sum_probs=59.8
Q ss_pred CCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH---HHHHHHhccCCCCCC--cHHHHHHHHHHHHccCCHHH
Q 011362 323 GYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI---ALELFRSLPCGVLVP--NVVTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 323 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 397 (487)
.....+.+-|......+ .++..+--.+.+++.++.+... ++.+++.+...+ .| .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455555666555545 4777777778888888777655 888888887763 23 33455667778889999999
Q ss_pred HHHHHHHHHhC
Q 011362 398 ARDLFLDMEEN 408 (487)
Q Consensus 398 A~~~~~~~~~~ 408 (487)
|.+.++.+++.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998884
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.89 E-value=1.5 Score=43.29 Aligned_cols=260 Identities=11% Similarity=-0.009 Sum_probs=123.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhH--HHHHHHHHhCCChHHHHHHHHHHHHCCC-------CCCHHHHH--HH
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF--NVIMDELCKNGKMDEASRLLDLMIQHGV-------RPDAFTYN--TL 210 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~--~l 210 (487)
-+....|+.++++.++......+...+..+- ..+.-+....|..+++..++...+...- .+....-. .|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455677777777777665432101122221 2222344455555566666655544311 01111122 23
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcC
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTV--FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIH 288 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (487)
..++.-.++. ++.+.+..+.... .... ..-..+...++-.|+.+....++..+.+.. ..+..-...+.-++...|
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCC
Confidence 3333334443 3444444444322 1111 112233444556677776677766666532 112222222333334567
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHh--HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 011362 289 QVERAFKLFDEMQRNGVAADTWT--YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALEL 366 (487)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (487)
+.+.+..+++.+.... .|.... ...+.-+|+..|+......+++.+.... ..++.....+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777666531 222211 1233345667777666666777766432 23333333444445556666666777
Q ss_pred HHhccCCCCCCcHHHHHHHHHHHHccCCH-HHHHHHHHHHHh
Q 011362 367 FRSLPCGVLVPNVVTYSIMIGGLCNDGQM-DKARDLFLDMEE 407 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 407 (487)
++.+.+.+ .|.+.--..+.-+....|.. .++..++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76666543 34443333333334444443 566777777764
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.75 E-value=0.34 Score=34.66 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=79.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+=+. .|.. ..|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 34677788888887776642 4555555555555555555555555544321 1221 122333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 269 (487)
..+-.+ ..+...+...+......|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 332221 113344445566666777777777777775432 36667777777777777777777777777777766
Q ss_pred Cc
Q 011362 270 IK 271 (487)
Q Consensus 270 ~~ 271 (487)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=1.4 Score=39.93 Aligned_cols=192 Identities=9% Similarity=0.084 Sum_probs=111.1
Q ss_pred CccchHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HccC
Q 011362 2 GRVSHGFVVLGRILKS-----CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGL----CRTS 72 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 72 (487)
|++++|++.+-.+.+. +..........++..|...|+++...+.+.-+....... ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4566777776555432 223346667888999999999999888777665442222 22223333322 2222
Q ss_pred ChH--HHHHHHHHHHhCCCCCcccccc---chHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCC---CHhhHHHHHH
Q 011362 73 HTI--VALNLFEEMANGNGEFGVVCEP---NTVTYTTIIDGLCKEGFVDKAKELLLQMKDK--NIKP---NVVTYTSVIR 142 (487)
Q Consensus 73 ~~~--~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~ 142 (487)
..+ .-..+.+.+..... |. +-. .......|...+...|++.+|.+++..+... |... -...+...++
T Consensus 109 ~~d~~~~~~~i~~l~~vte--~k-iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTE--NK-IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSS--CC-CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhc--cc-hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222 22222222211110 00 001 2344567788888899999999998887532 2111 1346677788
Q ss_pred HHHhcCChhhHHHHHHHHHH----cCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 143 GFCYAKDWNEAKRLFIEMMD----QGVQPN--VVTFNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
.|...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|.+.|..+..
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88889999999888887642 111121 12345556677778888888777766643
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.13 E-value=0.59 Score=33.48 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 378 NVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
+...++..+.....+|+-++-.+++..+... .+|++..+..+..+|.+.|+..++.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3445566677888899999999998886543 5678888889999999999999999999999988853
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=2 Score=39.00 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=102.6
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH---
Q 011362 36 ESRIMEAAALFTKLRVF-----GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID--- 107 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 107 (487)
.|++++|++.+-.+.+. +..........++..|...|+++...+.+..+.+..+ ........+++
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-------qlk~ai~~~V~~~~ 101 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-------QLKLSIQYMIQKVM 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-------TSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHH
Confidence 36788888877665532 2234556677888999999999998888877776552 11222233333
Q ss_pred -HHHhcCChhH--HHHHHHHHHhC--C-CCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-C----hhhHH
Q 011362 108 -GLCKEGFVDK--AKELLLQMKDK--N-IKP---NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP-N----VVTFN 173 (487)
Q Consensus 108 -~~~~~g~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 173 (487)
........+. -..+.+.+... | +-. .......|...+...|++.+|.+++..+...-... + ...+.
T Consensus 102 ~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l 181 (445)
T 4b4t_P 102 EYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL 181 (445)
T ss_dssp HHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222333222 12222211110 1 101 11223456777777888888888887775421111 1 23445
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 174 VIMDELCKNGKMDEASRLLDLMIQ----HGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 174 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
..++.|...+++..|..++..+.. ....|+ ...+...+..+...+++.+|-+.|.++.
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 556677777777777777766532 111222 1234445555566666666666555543
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.43 E-value=0.32 Score=43.24 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDM 405 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (487)
...++..+...|+++++...++.+.... +-+...|..++.++...|+..+|++.|+++
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344445555555555555555554432 334445555555565666666665555554
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.25 E-value=0.97 Score=32.81 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 011362 376 VPNVVTYSIMIGGLCNDGQM---DKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASI 451 (487)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 451 (487)
.|+..+-..+.+++.+..+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|++..+.+++ +.|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHH
Confidence 45666666666777666543 45666777766543222334444556677777778778777777777 4565433
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.19 E-value=0.67 Score=33.15 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 011362 376 VPNVVTYSIMIGGLCNDGQ---MDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIV 452 (487)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 452 (487)
.|+..+-..+.+++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|++..+.+++ +.|+..-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 4566665566666666554 345666666666543211234455566667777777777777777776 45554433
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.63 Score=44.96 Aligned_cols=50 Identities=8% Similarity=0.016 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccc
Q 011362 413 NVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI 464 (487)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (487)
+..-|..|.....+.+++++|.+.|+..+.. +-++..+..+++.|.+.+.
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~ 661 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPK 661 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCc
Confidence 4455888888888899999999999998874 5788888999999887653
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.61 Score=45.05 Aligned_cols=131 Identities=10% Similarity=0.006 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHccCC-hHHHHHHHHHHHhC-------CCCCcc--
Q 011362 27 TSLIKGLCAESR-IMEAAALFTKLRVFGCEPDVFTYT--TLVNGLCRTSH-TIVALNLFEEMANG-------NGEFGV-- 93 (487)
Q Consensus 27 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~-~~~a~~~~~~~~~~-------~~~~~~-- 93 (487)
..++..+...|+ .+.|+.+|+++.... |...++. .++..+...++ --+|.+++.+..+. -+....
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555556666 588999999998873 4444332 33333333332 23456655554421 100000
Q ss_pred --ccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 94 --VCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 94 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
..+........=...+...|+++-|+++-++.... .|.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 00001112223345677789999999999988876 3446789999999999999999999888775
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.51 E-value=0.33 Score=43.15 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-----QGVQPNVVTFN 173 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 173 (487)
+...++..+...|+.+++...+..+... .+.+...|..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4445566666777777777776666655 345666777777777777777777777766543 36777666543
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.33 E-value=7 Score=38.84 Aligned_cols=275 Identities=9% Similarity=0.014 Sum_probs=155.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-------CCCHhhHHH--HH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDA--FTYNTLLDGFCLTGRVNHAKELFVSMESMGC-------KHTVFSYSI--LI 246 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~--l~ 246 (487)
+....|+.++++.++......+...+. ..-..+.-+....|..+++..++.......- .+....-.. |.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 566788989998888776542111232 2333344445556655677777777654321 011122223 33
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCccCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH--HHHHHhC
Q 011362 247 NGYCKNKEIEGALSLYSEMLSKGIKPDV--VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTF--IDGLCKN 322 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 322 (487)
.+|.-.++ +++.+.+..+....-. .. ..-..+...+...|+.+....++..+.+.. +......+ .-++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33344444 3555666665553211 11 122233344557788888888888777642 33333333 3445578
Q ss_pred CCHhHHHHHHHHHHHcCCCCChHhH--HHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 011362 323 GYIVEAVELFHTLRILKCEFDIRAY--NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARD 400 (487)
Q Consensus 323 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (487)
|+.+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999988887642 3333322 234556778899888888988887531 2333333344445556777777888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 401 LFLDMEENAVVPNVITFDMLIRGFIRINEP-SKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
+++.+.+.+ .|....-..+.-+....|.. .++...+..+.. .+|..+-...+.+++..|
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 887666643 34444334444444555544 567888888864 456665555555555544
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.00 E-value=1.1 Score=32.07 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=55.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 18 CFTPDAVTFTSLIKGLCAESRI---MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+..|+..+--.+..++.+..+. .+++.+++.+.+.+.......+..+.-++.+.|++++|.+..+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3456777777788888888755 4689999999887522234566778889999999999999999999975
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.89 E-value=0.7 Score=34.59 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=47.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFG-CEPDV-------FTYTTLVNGLCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 86 (487)
.-++..-+..+...|.++.|+-+.+.+.... ..|+. .++..+..++...|++.+|...|++..+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3345556788899999999999888866542 12331 2566778899999999999999999654
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.56 E-value=1.6 Score=29.34 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+..- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444566666677666777777777777777777777777777777776432 333455655554
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.22 E-value=12 Score=38.77 Aligned_cols=167 Identities=12% Similarity=0.126 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
..++..+...+.++-|.++.... +.++..-..++.++...|++++|.+.|++....-. ......
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~-------~~~~l~---- 879 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLY-------SHTSQF---- 879 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCT-------TCCCSC----
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc-------ccchhh----
Confidence 44667778888888877765543 33445456678899999999999999987643210 000000
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHH
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKN--IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELC 180 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 180 (487)
..... +..+.... ...-...|..++..+.+.+.++.+.+.-...++...+.+. ..|..+.+.+.
T Consensus 880 ------~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L 949 (1139)
T 4fhn_B 880 ------AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 949 (1139)
T ss_dssp ------SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred ------hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Confidence 00000 11111110 0112345666677777777777777766665554222111 24566777777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHh
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 221 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (487)
..|++++|...+-.+..... -......|+...+..|..+
T Consensus 950 ~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 950 AAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred hhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 77888887777766655433 2445555655555555433
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.75 E-value=0.75 Score=34.42 Aligned_cols=86 Identities=10% Similarity=0.062 Sum_probs=59.7
Q ss_pred CccchHHHHHHHHHhCC-CCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------
Q 011362 2 GRVSHGFVVLGRILKSC-FTPDA-------VTFTSLIKGLCAESRIMEAAALFTKLRVFG-------------------- 53 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------- 53 (487)
|.|+.|.-+.+.++... .+|++ .++..+..++...|+|.+|...|++.++..
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p 113 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTP 113 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCc
Confidence 45666666666654432 12331 255667889999999999999999964321
Q ss_pred ----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 54 ----CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 54 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
...+.+.-..+..+|.+.+++++|+.+++.++..
T Consensus 114 ~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 114 QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0112245556888999999999999999998664
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.16 E-value=3.1 Score=29.74 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDL 458 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (487)
|.-+..+-++.+....+.|++.+....+++|.+.+|+.-|.++++-.+.+- .+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344566666777777777888888888888888888888888888777542 3445566666543
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.65 E-value=5.9 Score=41.04 Aligned_cols=150 Identities=13% Similarity=-0.030 Sum_probs=101.1
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC----C-------------
Q 011362 313 RTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV----L------------- 375 (487)
Q Consensus 313 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~------------- 375 (487)
..++..+...+..+-+.++..-. +.++..--.++.+|...|++++|.+.|++....- .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555566667766665544322 3344444566777888999999999998764210 0
Q ss_pred -----CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 376 -----VPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNV----ITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 376 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
..-..-|..++..|.+.|.++.+.++-+.+++.....+. ..|..+.+.+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-- 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-- 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--
Confidence 001123667778888899999999888877654222222 257788899999999999999998887643
Q ss_pred CCHHHHHHHHHHHHhcccccccc
Q 011362 447 PDASIVSIVVDLLAKNEISLNSL 469 (487)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~~~ 469 (487)
--...+..++..++..|.....+
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhh
Confidence 34677888888888877764444
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.61 E-value=7.2 Score=33.07 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPD-AVTFTSLIKGLCAESRIMEAAALFTK 48 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 48 (487)
+++.++-++.-++.|---. -..|.++..-|.+++++++|++++..
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3444445555555541111 23466667777777778877777654
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.12 E-value=9.5 Score=32.32 Aligned_cols=167 Identities=19% Similarity=0.131 Sum_probs=89.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHH----HHHHHHhCCCCCCHh
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE----LLLQMKDKNIKPNVV 135 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~ 135 (487)
.|.++..-|.+++++++|++++..-.. .+.+.|+...|.+ +++.+.+.+++++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~ 93 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDI 93 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH
Confidence 345566667778888888887665332 2334455544444 345555567777777
Q ss_pred hHHHHHHHHHhcCChh-hHHHHHHHHHH----cC--CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011362 136 TYTSVIRGFCYAKDWN-EAKRLFIEMMD----QG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYN 208 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 208 (487)
....++..+.....-+ .-.++++.+++ .| ..-++.....+...|.+.+++.+|...|-. |..-+...+.
T Consensus 94 ~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a 169 (312)
T 2wpv_A 94 SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYV 169 (312)
T ss_dssp HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHH
Confidence 7777777665533211 12233333332 22 223566677777888888888887776631 1111344444
Q ss_pred HHHHHHHcC---CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 209 TLLDGFCLT---GRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 209 ~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
.++.-+... |...++-- ..-.. +-.|...++...|..+++...
T Consensus 170 ~~l~~w~~~~~~~~~~e~dl--------------f~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 170 DLLWDWLCQVDDIEDSTVAE--------------FFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHTTCCCHHHHHH--------------HHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcchHHH--------------HHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 444433332 32222111 11111 223445677888877777654
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.85 E-value=1.7 Score=35.64 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..+.+.|++++|++....-++.. +.|...-..++..+|-.|++++|.+-++.+.+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34566777777777777766664 5566666677777777888888877777776654
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.13 E-value=6.5 Score=35.40 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDK--NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+...++..|.+.|+++.|.+.|.++... +..--...+..+++.+...++|..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555555555555555432 11122334444555555555555555555554
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.93 E-value=6.2 Score=28.68 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=54.7
Q ss_pred CCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 20 TPDAVTFTSLIKGLCAESRI---MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
.|+..+--.+..++.+..+. .+++.+++.+.+.+..........+.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 56777777788888888755 4788999999886532344456678889999999999999999999975
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.33 E-value=20 Score=33.97 Aligned_cols=80 Identities=9% Similarity=-0.043 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 179 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (487)
..-...+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~ 146 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHH
Confidence 3445556666677777666654332 2335555556666777778777777766666555432 445566666666
Q ss_pred HhCCCh
Q 011362 180 CKNGKM 185 (487)
Q Consensus 180 ~~~~~~ 185 (487)
.+.|..
T Consensus 147 ~~~g~l 152 (618)
T 1qsa_A 147 RASGKQ 152 (618)
T ss_dssp HHTTCS
T ss_pred HHCCCC
Confidence 655544
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.06 E-value=21 Score=33.87 Aligned_cols=333 Identities=10% Similarity=-0.009 Sum_probs=165.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011362 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVI 141 (487)
Q Consensus 62 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 141 (487)
...+..+.+.+++...+.++.. .|.+...-.....+....|+..+|......+-..|. ..+..+..++
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~ 143 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLF 143 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHH
Confidence 3455566677777766654432 145667777788888889998888888877766653 3556777788
Q ss_pred HHHHhcCChhh--HHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-----------
Q 011362 142 RGFCYAKDWNE--AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYN----------- 208 (487)
Q Consensus 142 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 208 (487)
..+.+.|.... ...-++.+...| +...-..++... . .+.....+.+..+.+. +++.....
T Consensus 144 ~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~ 216 (618)
T 1qsa_A 144 SVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQ 216 (618)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHH
Confidence 88877665543 333333334332 222222222211 1 1122122222333332 12222111
Q ss_pred ---HHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHH----HHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHH
Q 011362 209 ---TLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSI----LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLF 281 (487)
Q Consensus 209 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 281 (487)
..+.-+.+ .+.+.|...+....+.. ..+...... ++......+...++...+....... .+.....-.+
T Consensus 217 ~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~ 292 (618)
T 1qsa_A 217 MAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHH
Confidence 01112222 36677777777775433 223322222 2222233443455666666554432 2333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 011362 282 VGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLE 361 (487)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 361 (487)
....+.++++.|...|..+.... .......--+.+++...|+.++|..+|..+... .+ .|..+. ..+.|..-
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~ 364 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEY 364 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCC
T ss_pred HHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCC
Confidence 45557788888888887765431 112333445566777788888888888887631 11 222221 12223210
Q ss_pred HHHHHHHhccCCCCCC---cH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011362 362 IALELFRSLPCGVLVP---NV---VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIE 435 (487)
Q Consensus 362 ~a~~~~~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (487)
. +......+ .. ..-..-+..+...|....|...|..+... . +......+.......|.+..+..
T Consensus 365 ~-------~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 365 E-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp C-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred C-------CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHH
Confidence 0 00000001 00 01112344566788888888888877754 2 33323344444445555555443
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.92 E-value=14 Score=31.64 Aligned_cols=167 Identities=12% Similarity=0.157 Sum_probs=88.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCHhh
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL----LLQMKDKNIKPNVVT 136 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~ 136 (487)
|.++..-|.+++++++|++++..-.. .+.+.|+...+.++ ++.+.+.+++++...
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~ 96 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGAS 96 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 44566667788888888887655322 23334444433333 244445566666666
Q ss_pred HHHHHHHHHhcCChh-hHHHHHHHHHH----cC--CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011362 137 YTSVIRGFCYAKDWN-EAKRLFIEMMD----QG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNT 209 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 209 (487)
...++..+.....-+ .=.++.+++++ .| ..-++.....+...|.+.+++.+|...|- .|..+++..+..
T Consensus 97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~ 172 (336)
T 3lpz_A 97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLAR 172 (336)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHH
Confidence 666666665444311 11222222222 22 23466677778888888888888887772 133333356655
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 210 LLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
++.-+...+...++ +...-.. +-.|...++...|..+++...+
T Consensus 173 mL~ew~~~~~~~e~--------------dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 173 MEYEWYKQDESHTA--------------PLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTSCGGGH--------------HHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccH--------------HHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 55444443332211 1112222 2235556777778776665543
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.52 E-value=5.6 Score=26.76 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
+.-+..+-++.+....+.|++.+....+++|.+.+++..|.++|+-++.. ......+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34466677777777777888888888888888888888888888877654 2223444655543
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.44 E-value=4.1 Score=36.72 Aligned_cols=99 Identities=12% Similarity=-0.060 Sum_probs=50.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHhh
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKD---KNIKPNVVT 136 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~ 136 (487)
+...++..|.+.|+++.|.+.|.++...-.. ...-...+...++.+...+++..+...+.++.. .+..|+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3445556666666666666666655542211 134455666666666666666666666655532 122222111
Q ss_pred --HHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 137 --YTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 137 --~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...-+..+...++|..|.+.|-+...
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 11112233456667777666666544
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.23 E-value=18 Score=29.74 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF----TYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~ 76 (487)
.|++++|++....-++.. |-|...-..+++.++-.|++++|.+-++.+.+. .|+.. .|..+|.+
T Consensus 10 ~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a--------- 77 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA--------- 77 (273)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH---------
Confidence 478899999999999996 558888899999999999999999999998876 34433 34444432
Q ss_pred HHHHHHHHHhCCCCCccccccchHHHHHHHHHHH--hcCChhHHHHHHHHHHhC
Q 011362 77 ALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC--KEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 128 (487)
...=..+...+...+. +.....-...++.+.. ..|+.++|.++-..+.+.
T Consensus 78 -E~~R~~vfaG~~~P~~-~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -AQARKDFAQGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -HHHHHHHTTSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCCCC-CCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2333333333321111 1122233444555443 458899888888777553
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.06 E-value=11 Score=27.06 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
.-+..+-++.+...++.|++......+++|.+.+|+..|.++|+-++.. ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3345566666666777788888888888888888888888888777554 233344555554
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.91 E-value=22 Score=30.47 Aligned_cols=166 Identities=10% Similarity=-0.009 Sum_probs=88.3
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCcHHhHHHHHH
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL----FDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 317 (487)
|.++..-|.+.+++++|++++..-. ..+.+.|+...+.++ ++...+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444555677777777777654422 123344444433333 344455566677666666666
Q ss_pred HHHhCCCHh-HHHHHHHHHH----HcC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 318 GLCKNGYIV-EAVELFHTLR----ILK--CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 318 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
.+.....-+ .=..+.+.++ +.+ ..-|+.....+...|.+.+++.+|...|- . +..++...+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 655444211 1122222222 112 23467777888889999999999988873 2 22344466655555444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 391 NDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
..+...++--++ ...+--|...++...|..+++...
T Consensus 179 ~~~~~~e~dlfi---------------aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHTAPLYC---------------ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGGHHHHH---------------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCccHHHHH---------------HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 443322222211 122223556677777777665554
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.68 E-value=25 Score=31.04 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHH
Q 011362 171 TFNVIMDELCKNGKMDEASRLLDLM 195 (487)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~~ 195 (487)
....+...|.+.|+.++...++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556666666666666665544
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.42 E-value=17 Score=28.28 Aligned_cols=56 Identities=23% Similarity=0.157 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP 132 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 132 (487)
+....+..+|..|...+. ...-...|......+...|++.+|.++|+.-++.+..|
T Consensus 93 ~~~~~p~~if~~L~~~~I-----G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGI-----GTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTS-----STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566667766666552 13345566666666666777777777777666665554
No 269
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.30 E-value=27 Score=31.96 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHH--H-HHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC-EPDVF--T-YTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
...+|.+++.|...+.+++|..+..+..--.. .++.. . +..+++.+.-.+++.+|.+.+....+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 66789999999999999999999998752100 11111 2 3356788889999999999999987754
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.71 E-value=34 Score=30.17 Aligned_cols=167 Identities=11% Similarity=-0.058 Sum_probs=95.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---CHHHHHHHHHHHHccC-ChHH----HHHHHHHHHhCCCCCccc
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFG-CEP---DVFTYTTLVNGLCRTS-HTIV----ALNLFEEMANGNGEFGVV 94 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g-~~~~----a~~~~~~~~~~~~~~~~~ 94 (487)
.+...|...|.+.|+.++..+++......= .-+ .......++..+.... ..+. ..+.+++.......
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~---- 95 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT---- 95 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH----
Confidence 345678999999999999999998865431 011 2234556677665543 3333 33333433332200
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCC
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN-----VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ--GVQP 167 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~ 167 (487)
-.....=..++..|...|++.+|.+++..+.+.--..| ..++..-++.|...+++.++...+...... .+.+
T Consensus 96 -flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 96 -FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 00011223678888888888888888887765311111 234555667777888888888888776542 1223
Q ss_pred ChhhHHH----HHHHHH-hCCChHHHHHHHHHH
Q 011362 168 NVVTFNV----IMDELC-KNGKMDEASRLLDLM 195 (487)
Q Consensus 168 ~~~~~~~----l~~~~~-~~~~~~~a~~~~~~~ 195 (487)
++..... -...+. ..+++..|...|-+.
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 3322211 122345 677787777776554
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.58 E-value=17 Score=24.41 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh
Q 011362 36 ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV 115 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (487)
....++|..+-+.+...+. ...+-..-+..+...|+|++|..+.+... .||...|..|.. .+.|.-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----------~pdlepw~ALce--~rlGl~ 84 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----------WPALEPWFALCE--WHLGLG 84 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----------CGGGHHHHHHHH--HHTTCH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----------CchHHHHHHHHH--HhcccH
Confidence 3466777777777665431 11112222345567777777776655442 456666665544 356766
Q ss_pred hHHHHHHHHHHhCC
Q 011362 116 DKAKELLLQMKDKN 129 (487)
Q Consensus 116 ~~a~~~~~~~~~~~ 129 (487)
+++...+..+..+|
T Consensus 85 s~le~rL~~la~sg 98 (115)
T 2uwj_G 85 AALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhCC
Confidence 77776666666654
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.76 E-value=18 Score=24.34 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=48.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF 114 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (487)
-....++|..+-+.+...+. ...+-..-+..+...|+|++|..+.+... .||...|..|... +.|.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----------~pdlepw~ALce~--rlGl 84 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----------YPDLEPWLALCEY--RLGL 84 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----------CGGGHHHHHHHHH--HHTC
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----------CchHHHHHHHHHH--hccc
Confidence 34466777777777766432 11122222345667788888877766543 4666666666543 5676
Q ss_pred hhHHHHHHHHHHhCC
Q 011362 115 VDKAKELLLQMKDKN 129 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~ 129 (487)
-+++...+..+...|
T Consensus 85 ~s~le~rL~~la~sg 99 (116)
T 2p58_C 85 GSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 777777776666654
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.04 E-value=18 Score=24.22 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=54.8
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
+.++|-.+-+-+...+. ...++... +..+..+|++++|..+.+.+ ..||...|..+.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR-~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIR-ISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHH-HHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHH-HHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45677777777776642 12222222 44577899999999876654 3788888876654 58899999999998
Q ss_pred HHHhCC
Q 011362 83 EMANGN 88 (487)
Q Consensus 83 ~~~~~~ 88 (487)
.+...+
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 888776
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.07 E-value=16 Score=27.37 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 40 MEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 40 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
+++..+|..|...|+..... -|......+-..|++.+|.++|+.-.+...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44778899998887765544 466777888889999999999998887764
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.13 E-value=41 Score=26.22 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=59.7
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011362 342 FDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLI 421 (487)
Q Consensus 342 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 421 (487)
++...-...+.++...++.+ +...+..+.. .++..+-...+.++...|+. ++...+..+.+ .++...-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555666666543 3333333432 34555555556666666653 34444555543 34655555666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccc
Q 011362 422 RGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI 464 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (487)
.++.+.+. .++...+..+.. .++..+-...+.++.+.+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC---
T ss_pred HHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
Confidence 67777765 456666666665 3556666666666666544
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.58 E-value=42 Score=26.15 Aligned_cols=53 Identities=17% Similarity=0.047 Sum_probs=27.0
Q ss_pred HHHHHHHHHhccCCCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011362 360 LEIALELFRSLPCGVLVPN-VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP 412 (487)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 412 (487)
...+.++|..|...|+.-. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554443322 2344445555555555555555555555554444
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.19 E-value=48 Score=26.67 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVF--GCEP----DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
-+..+....+|++|++++++..+. +.++ +.......+..-.....-.-+..+.+.+.. .......
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---------~~~~~~~ 94 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---------SNEIVHL 94 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---------CSSHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCHHHH
Confidence 366778888899988888876543 1111 111122222222232333333444444432 1234444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMK 126 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~ 126 (487)
...+..+.+.|+.++|.++|-+..
T Consensus 95 r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 95 KSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChhHHHHHHHHHH
Confidence 555566666677777766665543
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.39 E-value=24 Score=28.01 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 40 MEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 40 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
+++..+|..|...|+..... -|......+-..|++.+|..+|+.-.+...
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 57778888888887765544 466777788888999999999988777654
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.94 E-value=38 Score=24.10 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCC
Q 011362 346 AYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ--MDKARDLFLDMEENAVV 411 (487)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 411 (487)
....++.-|...|+.++|...++++..... -...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 356778888889999999999998863211 112333444445544432 35566777777665544
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.66 E-value=23 Score=26.46 Aligned_cols=50 Identities=6% Similarity=-0.050 Sum_probs=31.8
Q ss_pred CccchHHHHHHHHHhCCCCC--CHHhHHHHHH------HHHhcCCHHHHHHHHHHHHh
Q 011362 2 GRVSHGFVVLGRILKSCFTP--DAVTFTSLIK------GLCAESRIMEAAALFTKLRV 51 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 51 (487)
|+|=+|-++++.+......+ +...|..||+ ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666777777777665444 4455666666 23456777777777777654
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.01 E-value=56 Score=24.09 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 011362 118 AKELLLQMKDKNIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 118 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (487)
+.++|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666665554432 23345555555556666666666666666554444
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.57 E-value=99 Score=26.82 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC--HhHHHHHHHHHH
Q 011362 206 TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE--IEGALSLYSEML 266 (487)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 266 (487)
....++.-|...++.++|...++++.... ........++......++ -+.+..++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~--~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG--GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 34567788888899999998888764221 122333344443333332 234445555544
No 283
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.41 E-value=57 Score=23.95 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=45.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.|...|..
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445677877665443 44555666667778999999998877677888888888999999987
No 284
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=55.62 E-value=73 Score=25.01 Aligned_cols=85 Identities=7% Similarity=0.039 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHh--HHHHHHHHHh--cCC--------------HHHHHHHHHHHHhcCCCCCHH--H---
Q 011362 4 VSHGFVVLGRILKSCFTPDAVT--FTSLIKGLCA--ESR--------------IMEAAALFTKLRVFGCEPDVF--T--- 60 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~--~g~--------------~~~A~~~~~~~~~~~~~~~~~--~--- 60 (487)
+.+-+.+++.++..+....... -..+++.+.+ .|+ ++.|+.+|+.+.+.-..++.. .
T Consensus 35 Frq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~~l~~~l~e~i~~ 114 (235)
T 3bu8_A 35 FRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVVESSRK 114 (235)
T ss_dssp HHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 4455666777775654444332 1223333332 221 468999999988764222211 1
Q ss_pred --HHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 61 --YTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 61 --~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
-...+..|.+.|.+++|.+++++.....
T Consensus 115 llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 115 LVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 1234557889999999999999998754
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.49 E-value=85 Score=26.52 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC--HhHHHHHHHHHH
Q 011362 207 YNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE--IEGALSLYSEML 266 (487)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 266 (487)
...++.-|...|+.++|...++++.... ........++......++ -+.+..++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4567788888899999998887764221 122223334444443333 344455555554
No 286
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.39 E-value=39 Score=21.47 Aligned_cols=63 Identities=6% Similarity=0.096 Sum_probs=46.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccccc
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRIN-EPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISL 466 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 466 (487)
+.+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..+....++.|.+.|...
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 345667877776554 3445555554 56678899999988776778888888899999999873
No 287
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=54.25 E-value=1.2e+02 Score=27.26 Aligned_cols=110 Identities=9% Similarity=-0.072 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh
Q 011362 36 ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV 115 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (487)
..+.+-|.++.. +.|.+--...|..-...+...|++++|.++--..++. +-.+..+.+.+-.+=..-|+.
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-------iLRt~~Ti~rFk~vp~~pgq~ 411 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-------ILRTPDTIRRFQSVPAQPGQT 411 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-------SSCSHHHHHHHTTSCCCTTSC
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-------cccCHHHHHHHhcCCCCCCCC
Confidence 356665655533 3344444455666677777888888887776655442 234455554444443344555
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011362 116 DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRL 156 (487)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 156 (487)
.-.+.+|..+.+.|- .+..--.-+++.-...|+.+-..++
T Consensus 412 splL~YF~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 412 SPLLQYFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp CHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHH
Confidence 555566665555542 2332222344444444444443333
No 288
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.95 E-value=61 Score=23.58 Aligned_cols=62 Identities=5% Similarity=0.014 Sum_probs=46.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.+.+.|+++++.-. .++..+...+..-.|.++++.+.+.+...+..|....++.|...|..
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345677887776543 34455556666778999999998877677888888888999999987
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.81 E-value=67 Score=24.04 Aligned_cols=55 Identities=5% Similarity=0.037 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 011362 398 ARDLFLDMEENAVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIV 452 (487)
Q Consensus 398 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 452 (487)
+..+|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|-...-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 4445555555544322 334445555555555566666665555555555544433
No 290
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=53.57 E-value=55 Score=23.48 Aligned_cols=61 Identities=5% Similarity=0.046 Sum_probs=43.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 404 DMEENAVVPNVITFDMLIRGFIRIN-EPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
.+.+.|+++++.-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.|...|..
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35567777766543 3444555555 5677888888888877677778887788888888887
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.52 E-value=28 Score=26.03 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=40.7
Q ss_pred chHHHHHHHH-HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCCh
Q 011362 5 SHGFVVLGRI-LKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF--GCEPDVFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 5 ~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 74 (487)
+++++.+... .+.|.+.+.. -..++..+...+..-.|.++++.+.+. +...+..|....+..+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444444443 3345454433 455666666667777788888877766 5555666655556666666644
No 292
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=51.33 E-value=58 Score=23.91 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=44.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRIN-EPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.|...|..
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667777776543 3344455555 5677889999998877677888888888889888887
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.63 E-value=2.1e+02 Score=28.92 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcc
Q 011362 415 ITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDAS----IVSIVVDLLAKNE 463 (487)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 463 (487)
..|..++..+-+.+-++.+.++.+.+++.--..|.. .+..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 367888889999999999999888888643223332 4455555544433
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.42 E-value=39 Score=24.94 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011362 346 AYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ--MDKARDLFLDMEENAVVPNVITFDMLIRG 423 (487)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (487)
....++.-|...|+.++|...++++.... .-...+...+..++-+.++ .+.+..++..+...++-+... +..+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q----~~~G 85 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ----MKRG 85 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH----HHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH----HHHH
Confidence 45678888999999999999999986321 1112333444445554322 345666777776655442222 2222
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc-cccccccc
Q 011362 424 FIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS-LNSLPSFT 473 (487)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~~~~~ 473 (487)
+ ....+.+.++. .+++--...+..++..+...|.+ ...+..+|
T Consensus 86 f------~~vl~~ldDl~-lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~p 129 (152)
T 2ion_A 86 Y------ERIYNEIPDIN-LDVPHSYSVLERFVEECFQAGIISKQLRDLCP 129 (152)
T ss_dssp H------HHHHHHHHHHH-HHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCT
T ss_pred H------HHHHHhChHhc-cCccchHHHHHHHHHHHHHCCCCCHHHHHhCC
Confidence 1 23334444443 23333344555666656666655 33333333
No 295
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.19 E-value=63 Score=23.51 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-++.|...|..
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345566777766443 3344455555 667888888888777677777777778888888877
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.67 E-value=81 Score=22.90 Aligned_cols=61 Identities=8% Similarity=-0.053 Sum_probs=42.7
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011362 13 RILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 74 (487)
.+.+.|...+.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 355566665544 4556777777777888999999998877666777766677777766654
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.46 E-value=1.9e+02 Score=26.69 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHh---hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNI-KPNVV---TYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
....++.+++.|...+.++.|..+..+..-... .++.. .+..+.+.+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356777777777777777777777777642110 11111 2233566666777777777777776654
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.90 E-value=89 Score=22.87 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 125 MKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445554332 2233444444455566666666666665554455554444455544443
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.06 E-value=98 Score=22.81 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 011362 398 ARDLFLDMEENAVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASI 451 (487)
Q Consensus 398 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 451 (487)
+..+|..|..+|+--. ...|......+...|++++|.++|+.-++.+-.|-...
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 5666666665544332 34455555556666666666666666666555554433
No 300
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.54 E-value=72 Score=23.20 Aligned_cols=60 Identities=5% Similarity=-0.012 Sum_probs=41.0
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011362 13 RILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 74 (487)
.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344566665544 355666666666 778999999998877666777766666677666653
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.45 E-value=2.9e+02 Score=28.02 Aligned_cols=131 Identities=9% Similarity=0.065 Sum_probs=73.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
++..+...|.++-|.++...+ +.++..-..++++|...|++++|..+|+++...-. .++.. ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~------~~~~~-~~----- 878 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLY------SHTSQ-FA----- 878 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTC------SSCCS-CG-----
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcc------cCccc-cc-----
Confidence 667777888887766544332 34555445688999999999999999998653210 01100 00
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhCC
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNG 183 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 183 (487)
..+....++..... .......|..++..+-+.+.++.+.+.-+.+++.-..-|. ..|+.++++.+..|
T Consensus 879 -----~~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 -----VLREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -----GGHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----chhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00011111111110 0112346777888888888888888877777764222122 24556666655443
No 302
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.92 E-value=84 Score=22.47 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=40.5
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011362 14 ILKSCFTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 74 (487)
+.+.|.+.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44566665544 345667776666 7788999999998877666777766666666666554
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.10 E-value=1.1e+02 Score=22.82 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=39.8
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHHh
Q 011362 389 LCNDGQMDKARDLFLDMEENAVVP--NVITFDMLIR-G-----FIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 442 (487)
+...|++-+|-++|+..-.....+ +...|..||. . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345599999999999887654455 4566677776 2 3467999999999998864
No 304
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=41.02 E-value=81 Score=21.28 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 353 GLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
.+...|+|++|..+.+... .||...|..+. -.+.|--+++..-+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3455666666666655443 45555554432 234455555555554554443
No 305
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.13 E-value=2.1e+02 Score=25.78 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=30.4
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC-----HhHHHHHHHHHHHCCCc
Q 011362 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE-----IEGALSLYSEMLSKGIK 271 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 271 (487)
+.++.+.|+.++..|.+.|..|....-..+..++-.-|. ...|...++.+..-|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 456777777777777777655544444444444443332 23444555555555543
No 306
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.86 E-value=98 Score=22.65 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 125 MKDKNIKPNVVTYTSVIRGFCYAK-DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 444555544332 22344444444 455666666666665544455554444455544443
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.97 E-value=1.6e+02 Score=23.70 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
+.......+..+.+.|+.++|.++|=+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3334444445555556666666555443
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.71 E-value=81 Score=23.50 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=29.4
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC--CCccChhhHHHHHHHHHhcC
Q 011362 231 ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPDVVIHNTLFVGLFEIH 288 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 288 (487)
.+.|...+. .-..++..+...+.+-.|.++++.+.+. ++..+..|...-+..+...|
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344554433 3344555555555666666666666654 44444444444444444443
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.00 E-value=1.6e+02 Score=23.44 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 011362 396 DKARDLFLDMEENAVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIV 455 (487)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (487)
+++..+|..|..+|+--. ...|......+...|++++|..+|+.-++.+-.|-...-...
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 466677888877765533 455667777777888888888888888877767755544443
No 310
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.81 E-value=1.6e+02 Score=23.83 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFT 47 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~ 47 (487)
+.+...++.|+.+....+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 34555567777655544443
No 311
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=36.79 E-value=2.9e+02 Score=26.47 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=38.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc--
Q 011362 174 VIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK-- 251 (487)
Q Consensus 174 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 251 (487)
.....+.-.|+++.|..++-.. ...+...+...+.. .|-.... ..+...........+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKID----SSTRLTKKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC---------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCC----CcccccCCCcccccHHHHHHHHHHHh
Confidence 3556667788999998887643 12233333333322 2322211 111111101113346677777764
Q ss_pred -cCCHhHHHHHHHHH
Q 011362 252 -NKEIEGALSLYSEM 265 (487)
Q Consensus 252 -~~~~~~a~~~~~~~ 265 (487)
..++..|++.|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 56777787777665
No 312
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.27 E-value=1.7e+02 Score=23.63 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=6.4
Q ss_pred HHHhcCChhHHHHH
Q 011362 108 GLCKEGFVDKAKEL 121 (487)
Q Consensus 108 ~~~~~g~~~~a~~~ 121 (487)
..++.|+.+....+
T Consensus 11 ~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 11 KAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHH
Confidence 34455555443333
No 313
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=36.14 E-value=46 Score=19.75 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDEL 179 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (487)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45566666655443333445565555554
No 314
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.90 E-value=2.6e+02 Score=25.63 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|+........+..|..+|.++.... |.+...|+.|.......|+.-+|.-.|-+..... .|-..+...+...
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-------~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-------FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-------BCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-------CCChhHHHHHHHH
Confidence 3444455667788999999888774 5566688888888888888888887777766654 5666777777666
Q ss_pred HHh
Q 011362 109 LCK 111 (487)
Q Consensus 109 ~~~ 111 (487)
+.+
T Consensus 230 f~~ 232 (497)
T 1ya0_A 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 315
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.21 E-value=74 Score=22.59 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=33.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 420 LIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
++..+...+..-.|.++++.+.+.+...+..|....++.|...|..
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4445555566677888888888776666777777777888888877
No 316
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.75 E-value=65 Score=22.89 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTI 75 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 75 (487)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4566777777778899999999988876677777777777777776543
No 317
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.02 E-value=75 Score=22.89 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=31.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 420 LIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
++..+...++.-.|.++++.+.+.+...+..|...-++.|...|..
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4444555555666777777777766666777777777777777776
No 318
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.63 E-value=77 Score=18.28 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHH
Q 011362 7 GFVVLGRILKSCFTPDAVTFTSLIKGLCAESR--IMEAAALFTKL 49 (487)
Q Consensus 7 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~ 49 (487)
-.+.++.++..|++++ ....++.+.|. ++.|++++.+|
T Consensus 9 n~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 9 NRQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp CHHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 3456666666666542 22334444554 67777766665
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.18 E-value=1.7e+02 Score=24.01 Aligned_cols=188 Identities=10% Similarity=0.030 Sum_probs=87.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
.+...+..|+.+-+..+++. |..++...-...+...+..|+.+-+.-+++. +... -..+..-++. +..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~---~~~d~~g~t~-L~~ 101 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILLFS----GLDD---SQFDDKGNTA-LYY 101 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT----TCCT---TCCCTTSCCH-HHH
T ss_pred HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCC---CCcCCCCCcH-HHH
Confidence 35555678887766555544 3222222112344555677887666555543 3110 0112222222 333
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhCCC
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVV---TYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV-TFNVIMDELCKNGK 184 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 184 (487)
.+..|+.+-+.-+++. |..++.. -+.+.+...+..|+.+-+ +.+.+.|..+... .-...+...+..|.
T Consensus 102 A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGH 173 (285)
T ss_dssp HHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcCh
Confidence 4466776655544443 4333321 222344445566766544 3344444433221 23344555567788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
.+-+.-+++.-..-... +..-.+..+...+..|+. ++.+.+.+.|..++...
T Consensus 174 ~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 174 VDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 77666666553332211 111111112333445554 44555666676666544
No 320
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=30.91 E-value=92 Score=18.92 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT 71 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (487)
.++-++..++...-.++++..+.++.+.| ..+...|..-.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 35667777777788889999999999887 67777777666665543
No 321
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.75 E-value=59 Score=23.44 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 74 (487)
-..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3556777777777888999999998877667777776677777776654
No 322
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.51 E-value=2.5e+02 Score=23.84 Aligned_cols=49 Identities=6% Similarity=0.017 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 396 DKARDLFLDMEENAVVPNV--ITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
.+..++--.+..-.+.|.. .++..-+....+.+++..|..+.+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444444444432 334555666778888888888888888755
No 323
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.26 E-value=2e+02 Score=22.65 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HH--ccCC--------------hHHHHHHHHHHHhCCCCCcccccc
Q 011362 37 SRIMEAAALFTKLRVFGCEPDVFTYTTLVNG---LC--RTSH--------------TIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 37 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~~g~--------------~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
++|.+-+.+++.++..+....... ...++. +. ..|+ .+.|+.+++.+.+.. +.
T Consensus 33 ~dFrq~rdi~eall~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~-------~l 104 (235)
T 3bu8_A 33 GDFRQIRDIMQALLVRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEF-------TL 104 (235)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHHhCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhh-------cC
Confidence 356666777777775655444332 122222 21 1221 456888888777654 11
Q ss_pred chHH---H-----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 98 NTVT---Y-----TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 98 ~~~~---~-----~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+... . ...+..|.+.|.+++|.+++++....
T Consensus 105 ~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 105 TEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 1111 1 12344566777777777777776654
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.30 E-value=2e+02 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=21.1
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
+-.+.+.|+-++.+|++.| .|....-..++.+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3466777777777777776 544444444444444444
No 325
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.17 E-value=84 Score=25.32 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=28.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHH--hcCChhhHHHHHHHH
Q 011362 108 GLCKEGFVDKAKELLLQMKDKNIKPNVVT-------YTSVIRGFC--YAKDWNEAKRLFIEM 160 (487)
Q Consensus 108 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 160 (487)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34566777777777776666554444222 223333321 456666665555543
No 326
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.88 E-value=2e+02 Score=22.26 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHH---HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-----HhHHHHHHHHHHHcCCCCCH
Q 011362 168 NVVTFNVIMDEL---CKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR-----VNHAKELFVSMESMGCKHTV 239 (487)
Q Consensus 168 ~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 239 (487)
+-..+..+++++ .+-.+.+.|+-++.+|++.|..|....-..++.+....|. ...|...++.....|.|--.
T Consensus 3 ~Gd~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 82 (201)
T 3bge_A 3 LGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGE 82 (201)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHH
T ss_pred CchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHH
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 240 FSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
..+...+..++..-+-..+...+....+
T Consensus 83 i~LaqaviyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 83 RAIAQAIIYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHH
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.40 E-value=1.8e+02 Score=21.41 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=11.9
Q ss_pred HHHHHHHccCChHHHHHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEM 84 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~ 84 (487)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 328
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.11 E-value=2.3e+02 Score=22.25 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=36.1
Q ss_pred HHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-----HhHHHHHHHHHHHcCCC
Q 011362 172 FNVIMDELC---KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR-----VNHAKELFVSMESMGCK 236 (487)
Q Consensus 172 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 236 (487)
+..+++++. +-.+.+.|+-++.+|++.|..|....-..++.+.-.-|. ...|...++.....|.|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344555553 456777777777777777766555555555555444442 23344444555555543
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.74 E-value=1.2e+02 Score=19.00 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=25.9
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCC
Q 011362 125 MKDKNIKPNVVTYTSVIRGFCYAK-DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 183 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (487)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444332 23334443333 34455556665555444444444444444444433
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.93 E-value=1.1e+02 Score=20.41 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHH
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE 120 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 120 (487)
...+.|.+++..+.++| +.+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG----------~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----------SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----------TTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----------hHHHHHHHHHHHHcCcHHHHHH
Confidence 47889999999998876 4788889999877777665543
No 331
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.68 E-value=2.3e+02 Score=21.74 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHcCCC
Q 011362 203 DAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~ 219 (487)
+..+-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33444444444444443
No 332
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.53 E-value=1.7e+02 Score=25.04 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHhccCCCCCCcHHH---HHHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG--RLEIALELFRSLPCGVLVPNVVT---YSIM 385 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~---~~~l 385 (487)
....++.-|...|+.++|...++++.... ........++......+ ..+.+..++..+.+.++-+.... |..+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~--~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~ 90 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPS--LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEI 90 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG--GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35667788888899999998888875211 11122222222222222 23456667777765554333322 2222
Q ss_pred HHHHHc-cCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 386 IGGLCN-DGQMDKARDLFLDMEEN----AVVPNVITFDMLIRGFIRINEPSKV-IELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 386 ~~~~~~-~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
+..+-. .=|...|...+.++... |.-|-...+..+...+...|..... ..+++.+... .-...+.+.+
T Consensus 91 ~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~------~g~~~l~~~~ 164 (339)
T 1ug3_A 91 LELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKS------MGPKKVGTLW 164 (339)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHH------HCHHHHHHHH
T ss_pred HhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH------cCHHHHHHHH
Confidence 222222 22555666666666533 3332223333344444455544333 3344444422 1134445555
Q ss_pred Hhcccc
Q 011362 460 AKNEIS 465 (487)
Q Consensus 460 ~~~g~~ 465 (487)
.+.|..
T Consensus 165 ~~s~l~ 170 (339)
T 1ug3_A 165 REAGLS 170 (339)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 555443
No 333
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.15 E-value=1.5e+02 Score=19.59 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=32.9
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHHh
Q 011362 389 LCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGF-----IRINEPSKVIELLHKMKE 442 (487)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 442 (487)
+...|++-+|-++++..-.....|....|..+|... .+.|+. |.+++.+...
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 345588888888888875544334455566665432 255666 7777777654
No 334
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.03 E-value=5.1e+02 Score=24.85 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=41.7
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC-ccChhhHHHHHHHHH--
Q 011362 209 TLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIHNTLFVGLF-- 285 (487)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-- 285 (487)
....++.-.|+++.|..++... ...+..++...+..| |-.... +.+..... .| ..-+..++..|.
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~----~~lls~~~~~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKID----SSTRLTKKPKR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC----------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCC----CcccccCCCcc-cccHHHHHHHHHHH
Confidence 3556667789999999987644 133444444444333 332221 11111100 11 223666777775
Q ss_pred -hcCCHHHHHHHHHHH
Q 011362 286 -EIHQVERAFKLFDEM 300 (487)
Q Consensus 286 -~~~~~~~a~~~~~~~ 300 (487)
+..+...|.++|--+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 467888888888766
No 335
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.66 E-value=68 Score=25.89 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHH--ccCChHHHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFT-------YTTLVNGLC--RTSHTIVALNLFEEMA 85 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~~~ 85 (487)
.+...++.|+.+....+++.+...+..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34555678999888888887777665554332 223333322 5677777777766543
No 336
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.04 E-value=1.3e+02 Score=23.36 Aligned_cols=86 Identities=8% Similarity=-0.006 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHH--HHHHHHh--cCC--------------HHHHHHHHHHHHhcCCCCCHHH----
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTS--LIKGLCA--ESR--------------IMEAAALFTKLRVFGCEPDVFT---- 60 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~--~g~--------------~~~A~~~~~~~~~~~~~~~~~~---- 60 (487)
++.+.+.+++.++....+.+...... +.+.+.+ .|+ ++.|+.+|+.+.+....+...+
T Consensus 40 dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lheei~~Ll 119 (211)
T 3bqo_A 40 DFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLI 119 (211)
T ss_dssp HHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34456667777776433334432222 3333332 221 4578888888765421111111
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
-...+..|.+.|.+++|.++|+++-...
T Consensus 120 k~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 120 KIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 1234557899999999999999976654
No 337
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.01 E-value=1e+02 Score=23.15 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
...++.-|...|+.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 46678888889999999999999863
No 338
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.44 E-value=2.2e+02 Score=20.10 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=11.7
Q ss_pred HHHHHHHccCChHHHHHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEM 84 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~ 84 (487)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 339
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.18 E-value=3.8e+02 Score=22.76 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
....+....+.+++..|..+-+++++.+
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3344555566666766666666666654
No 340
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.96 E-value=1.9e+02 Score=19.09 Aligned_cols=27 Identities=19% Similarity=0.062 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLR 50 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 50 (487)
..+......+.+.|+|++|++..+...
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345666777888899988887766654
No 341
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.91 E-value=5.7e+02 Score=27.07 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=31.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 390 CNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
...+++..|++++.++.+. +|....|..++..+...| +.......+++.-
T Consensus 1295 ~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~~~~ 1344 (1354)
T 3lxu_X 1295 YAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINRMMI 1344 (1354)
T ss_dssp HHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHhhhh
Confidence 3567777777777777664 356667776666665554 4444455555543
No 342
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.91 E-value=82 Score=25.76 Aligned_cols=41 Identities=20% Similarity=-0.003 Sum_probs=25.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 425 IRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
...|+.+.+.+.++++...|..|...+...+..++...|..
T Consensus 47 l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG~~ 87 (258)
T 2i2x_B 47 IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVIRL 87 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776666655555555555554444
No 343
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.40 E-value=4.9e+02 Score=23.64 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=66.2
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc
Q 011362 13 RILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFG 92 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 92 (487)
-+.+.|.|.-...|..-...+...|++++|.++-....+ |+-.+..+.+.+-.+=...|+..--+.+|..+.+.+
T Consensus 351 lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g---- 425 (494)
T 1bpo_A 351 MAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG---- 425 (494)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS----
T ss_pred HHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC----
Confidence 345556666666777778889999999999988766543 445566666555544445566666777777777665
Q ss_pred cccccchHHHHHHHHHHHhcCChhHHHHHHH
Q 011362 93 VVCEPNTVTYTTIIDGLCKEGFVDKAKELLL 123 (487)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 123 (487)
..+..---.+++.-..+|+.+-..+++.
T Consensus 426 ---~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 426 ---QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 4444444445555556666655555543
No 344
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.37 E-value=3.9e+02 Score=22.52 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCC
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ--MDKARDLFLDMEENAVV 411 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 411 (487)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 356777788889999999999988732111 12233344444444332 34466677777665544
No 345
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.30 E-value=1.5e+02 Score=22.97 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhCCCCCCHHh----HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 5 SHGFVVLGRILKSCFTPDAVT----FTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
+.|+.+++.+...-..+.... -...+..|.+.|.+++|.++|++.-..
T Consensus 95 ESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 95 ESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 456666666555421111111 122355689999999999999997654
Done!