BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011363
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 317 LLAVGTKLEHIISQLAHEVAEKHIAIEGDLVVQPSDDHFWFNRPRIVLILIHII--LFQN 374
LLA L ++I AHE++ + G+LV + DHFW N V + HI LF
Sbjct: 280 LLAGDKSLSNVI---AHEISH---SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 333
Query: 375 SFELAFFFWIWVQYGFDSCTMGQVRFIIPRLVIGCFIQFLCSYSTLP 421
F W + T G+ +V I +YS++P
Sbjct: 334 KFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVP 380
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 317 LLAVGTKLEHIISQLAHEVAEKHIAIEGDLVVQPSDDHFWFNRPRIVLILIHII--LFQN 374
LLA L ++I AHE++ + G+LV + DHFW N V + HI LF
Sbjct: 282 LLAGDKSLSNVI---AHEISH---SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 335
Query: 375 SFELAFFFWIWVQYGFDSCTMGQVRFIIPRLVIGCFIQFLCSYSTLP 421
F W + T G+ +V I +YS++P
Sbjct: 336 KFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPNVAYSSVP 382
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 317 LLAVGTKLEHIISQLAHEVAEKHIAIEGDLVVQPSDDHFWFNRPRIVLILIHII--LFQN 374
LLA L ++I AHE++ + G+LV + DHFW N V + HI LF
Sbjct: 282 LLAGDKSLSNVI---AHEISH---SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 335
Query: 375 SFELAFFFWIWVQYGFDSCTMGQVRFIIPRLVIGCFIQFLCSYSTLP 421
F W + T G+ +V I +YS++P
Sbjct: 336 KFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVP 382
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 317 LLAVGTKLEHIISQLAHEVAEKHIAIEGDLVVQPSDDHFWFNRPRIVLILIHII--LFQN 374
LLA L ++I AHE++ + G+LV + DHFW N V + HI LF
Sbjct: 288 LLAGDKSLSNVI---AHEISH---SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 341
Query: 375 SFELAFFFWIWVQYGFDSCTMGQVRFIIPRLVIGCFIQFLCSYSTLP 421
F W + T G+ +V I +YS++P
Sbjct: 342 KFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVP 388
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 317 LLAVGTKLEHIISQLAHEVAEKHIAIEGDLVVQPSDDHFWFNRPRIVLILIHII--LFQN 374
LLA L ++I AHE++ + G+LV + DHFW N V + HI LF
Sbjct: 282 LLAGDKSLSNVI---AHEISH---SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 335
Query: 375 SFELAFFFWIWVQYGFDSCTMGQVRFIIPRLVIGCFIQFLCSYSTLP 421
F W + T G+ +V I +YS++P
Sbjct: 336 KFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVP 382
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 317 LLAVGTKLEHIISQLAHEVAEKHIAIEGDLVVQPSDDHFWFNRPRIVLILIHII--LFQN 374
LLA L ++I AHE++ + G+LV + DHFW N V + HI LF
Sbjct: 283 LLAGDKSLSNVI---AHEISH---SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 336
Query: 375 SFELAFFFWIWVQYGFDSCTMGQVRFIIPRLVIGCFIQFLCSYSTLP 421
F W + T G+ +V I +YS++P
Sbjct: 337 KFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVP 383
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 317 LLAVGTKLEHIISQLAHEVAEKHIAIEGDLVVQPSDDHFWFNRPRIVLILIHII--LFQN 374
LLA L ++I AHE++ + G+LV + DHFW N V + HI LF
Sbjct: 283 LLAGDKSLSNVI---AHEISH---SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 336
Query: 375 SFELAFFFWIWVQYGFDSCTMGQVRFIIPRLVIGCFIQFLCSYSTLP 421
F W + T G+ +V I +YS++P
Sbjct: 337 KFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVP 383
>pdb|2CIM|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CIM|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CJ9|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJ9|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJB|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
pdb|2CJB|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
Length = 522
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 176 GAKIRKWKQWEDSASKEEHNLATVQSRRYIQVQDHDF--IKNRFQGLGKSY 224
GAK+ +WK ED T+QS RY++V D F K + LGK Y
Sbjct: 65 GAKVTEWKLGEDRIE------LTLQSGRYVRVHDAIFRLRKQLAEALGKKY 109
>pdb|2CJA|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Atp
pdb|2CJA|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Atp
Length = 522
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 176 GAKIRKWKQWEDSASKEEHNLATVQSRRYIQVQDHDF--IKNRFQGLGKSY 224
GAK+ +WK ED T+QS RY++V D F K + LGK Y
Sbjct: 65 GAKVTEWKLGEDRIE------LTLQSGRYVRVHDAIFRLRKQLAEALGKKY 109
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 210 HDFIKNRFQGLGKSYVLMGWLHSFFKQFYGSVTKSDYTTLRLGFIMTH 257
+D +K + +G+SY+ + F + YG TK D+ + G+ H
Sbjct: 144 YDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENH 191
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 210 HDFIKNRFQGLGKSYVLMGWLHSFFKQFYGSVTKSDYTTLRLGFIMTH 257
+D +K + +G+SY+ + F + YG TK D+ + G+ H
Sbjct: 144 YDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENH 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,280,366
Number of Sequences: 62578
Number of extensions: 495138
Number of successful extensions: 1226
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 15
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)