Query 011363
Match_columns 487
No_of_seqs 143 out of 239
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 00:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 9E-186 2E-190 1445.9 36.9 442 4-463 1-445 (478)
2 COG1033 Predicted exporters of 58.9 20 0.00044 41.6 6.3 55 18-72 252-317 (727)
3 PF06305 DUF1049: Protein of u 57.9 32 0.00069 27.1 5.6 47 14-60 18-64 (68)
4 PRK11677 hypothetical protein; 57.2 17 0.00036 33.9 4.4 44 13-60 2-45 (134)
5 TIGR02976 phageshock_pspB phag 52.9 41 0.00089 28.4 5.7 28 13-40 3-30 (75)
6 PF07219 HemY_N: HemY protein 44.3 35 0.00077 29.7 4.2 46 10-55 13-65 (108)
7 TIGR03144 cytochr_II_ccsB cyto 38.4 1.3E+02 0.0029 29.8 7.7 29 48-76 142-170 (243)
8 TIGR03777 RPE4 Rickettsial pal 37.3 15 0.00033 26.5 0.7 10 344-353 23-32 (32)
9 PF01578 Cytochrom_C_asm: Cyto 31.8 1.4E+02 0.003 28.6 6.5 30 48-77 116-145 (214)
10 PF12801 Fer4_5: 4Fe-4S bindin 26.9 1.2E+02 0.0025 22.5 4.0 25 12-36 1-25 (48)
11 TIGR01106 ATPase-IIC_X-K sodiu 26.1 2.1E+02 0.0046 34.4 8.0 43 349-391 809-853 (997)
12 PF01956 DUF106: Integral memb 25.8 46 0.001 31.0 2.0 135 143-297 6-156 (168)
13 PF15468 DUF4636: Domain of un 25.2 39 0.00086 34.1 1.5 38 267-309 25-62 (243)
14 COG3114 CcmD Heme exporter pro 23.7 1.9E+02 0.0041 24.2 4.9 41 297-337 9-58 (67)
15 PF09878 DUF2105: Predicted me 23.7 1.1E+02 0.0023 30.6 4.1 47 276-327 158-207 (212)
16 TIGR00921 2A067 The (Largely A 22.9 2.8E+02 0.006 31.4 7.8 57 15-71 620-686 (719)
17 PHA03105 EEV glycoprotein; Pro 22.6 1.1E+02 0.0023 29.8 3.7 33 16-48 9-41 (188)
18 TIGR00540 hemY_coli hemY prote 22.6 1.1E+02 0.0023 32.3 4.3 38 10-47 38-82 (409)
19 PRK10747 putative protoheme IX 20.8 1.1E+02 0.0025 32.1 4.0 37 10-46 38-81 (398)
20 PF13297 Telomere_Sde2_2: Telo 20.8 52 0.0011 27.0 1.1 13 53-65 17-29 (60)
21 COG3105 Uncharacterized protei 20.1 1.7E+02 0.0037 27.5 4.5 61 12-76 6-75 (138)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=9e-186 Score=1445.94 Aligned_cols=442 Identities=59% Similarity=1.049 Sum_probs=420.5
Q ss_pred CCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011363 4 GGTTLEYTPTWVVALVCSVIVIISLAVERFLHYIGKVLKKNNQKPLFEALQKIKEELMLLGFISLLLTVFQGMIAKICIS 83 (487)
Q Consensus 4 ~~rsLe~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~l~k~~kkaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICIp 83 (487)
||||||+|||||||+||+|||++|+++||++|++||||+|++||+|+|||||||+|||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCcccccccccccccccccccccccCCCCcccccccc-CCCCcccccCCccccccchhhhHHHHHHHHHHH
Q 011363 84 EELASKWLPCDKKAHKAATKSTAHFESFFSSFTSHHGAGRRLLAES-SASSDYCAGKGKVPLLSITALHHLHIFIFVLAV 162 (487)
Q Consensus 84 ~~~~~~~lPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RrlLa~~-~~~~~~C~~~GkvpliS~~~lhQLHiFIFvLAv 162 (487)
++++++|+||+..+..++. . ++.++||+|+.. ++++++|++||||||+|.|||||||||||||||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~--~------------~~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV 146 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKE--G------------SSHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAV 146 (478)
T ss_pred hhHHhcccCCCCccccccc--c------------cchhhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHH
Confidence 9999999999864211111 0 012478998743 445679988899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhhhhhhhhhhhhhhhhc--ccccccccceEEeeeccccccccccCCCchhHHHHHHHHHHhhccC
Q 011363 163 VHVTFCALTILFGGAKIRKWKQWEDSASKEEH--NLATVQSRRYIQVQDHDFIKNRFQGLGKSYVLMGWLHSFFKQFYGS 240 (487)
Q Consensus 163 ~HV~ys~~Tm~Lg~~Kir~Wk~WE~e~~~~~~--~~~p~~~~r~~~~~qt~F~~~h~~~~~~~s~~l~Wi~cFfrQF~~S 240 (487)
+||+|||+||+||++|||+||+||+|++++++ ++|| +|++++||++|+|+|+ ++|++++++.|++|||||||+|
T Consensus 147 ~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~---~r~~~~~qt~F~r~h~-~~w~~~~~~~wi~~FfrQF~~S 222 (478)
T PF03094_consen 147 VHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDP---RRFRLTRQTTFVRRHT-SFWSKSPVLSWIVCFFRQFYGS 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCc---ceeeeecccHHHHhhc-CCcccChhHHhHHHHHHHhhcc
Confidence 99999999999999999999999999999866 4788 9999999999999997 8899999999999999999999
Q ss_pred ccchhHHHHHHHHhhhhcCCCCCCchHHHHHHHhhhccccceeehhHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHh
Q 011363 241 VTKSDYTTLRLGFIMTHCRGNPKFNFHKYLMRTLEADFKKVVGISWYLWLFVVIFLLINIDGWHTYFWIAFVPFILLLAV 320 (487)
Q Consensus 241 V~k~DYltLR~gFI~~H~~~~~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vvlFlLlnv~Gw~~yfWlsfiPlillL~V 320 (487)
|+|+||+|||+|||++|+.++++|||||||+||||||||+||||||+||++||+|+|+|++|||+|||+||||++++|+|
T Consensus 223 V~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~V 302 (478)
T PF03094_consen 223 VTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLV 302 (478)
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccccCCccccCCCCccccCcchHHHHHHHHHHhhhhHHHHHHHHHHHhhCCcccccCCcce
Q 011363 321 GTKLEHIISQLAHEVAEKHIAIEGDLVVQPSDDHFWFNRPRIVLILIHIILFQNSFELAFFFWIWVQYGFDSCTMGQVRF 400 (487)
Q Consensus 321 GtKLq~II~~la~ei~e~~~~v~G~~~v~p~D~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~fG~~SC~~~~~~~ 400 (487)
|||||+||++||+|++|++++++|+|+|+|+|++|||+||++||+||||+|||||||||||+|+||+||++||||++.++
T Consensus 303 GtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~ 382 (478)
T PF03094_consen 303 GTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEY 382 (478)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeehhcccccccccchhhHhhhccccccccccchhHHHHHHhHHHHHHhhhcCCCCC
Q 011363 401 IIPRLVIGCFIQFLCSYSTLPLYVIVTQMGSSFKKAIFDEHIQDGLVGWARMAKKKNTNKNAA 463 (487)
Q Consensus 401 ii~Rl~~Gv~vq~lCSY~TLPLYALVTQMGs~~K~~if~e~v~~~l~~W~~~akkk~~~~~~~ 463 (487)
+++|+++|+++|++|||+|||||||||||||+||++||+|+|+++|++||++||||++.++++
T Consensus 383 ~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~~ 445 (478)
T PF03094_consen 383 IIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKSA 445 (478)
T ss_pred eeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999876643
No 2
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=58.86 E-value=20 Score=41.61 Aligned_cols=55 Identities=16% Similarity=0.341 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----hHHHHHHHHHHHHH------HHHHHHHHHHH
Q 011363 18 LVCSVIVIISLAVERFLHYIGKVLKKNNQK-----PLFEALQKIKEELM------LLGFISLLLTV 72 (487)
Q Consensus 18 ~Vc~v~v~iSl~~Er~lH~lgk~l~k~~kk-----aL~eALeKiK~ELM------LLGFISLLLtv 72 (487)
...++.++|++.+++++|...++.+.+++. |+.+|+.+...=++ -+||+||+.+-
T Consensus 252 s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 252 TSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 445667788999999999999999877763 67777777766554 47999998763
No 3
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.93 E-value=32 Score=27.13 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=36.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 011363 14 WVVALVCSVIVIISLAVERFLHYIGKVLKKNNQKPLFEALQKIKEEL 60 (487)
Q Consensus 14 WaVA~Vc~v~v~iSl~~Er~lH~lgk~l~k~~kkaL~eALeKiK~EL 60 (487)
+-++++.++..++++++=-.+.....+=.|++.+.+-..+++++.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667777777777777777767777788888999999886
No 4
>PRK11677 hypothetical protein; Provisional
Probab=57.24 E-value=17 Score=33.87 Aligned_cols=44 Identities=30% Similarity=0.343 Sum_probs=29.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 011363 13 TWVVALVCSVIVIISLAVERFLHYIGKVLKKNNQKPLFEALQKIKEEL 60 (487)
Q Consensus 13 TWaVA~Vc~v~v~iSl~~Er~lH~lgk~l~k~~kkaL~eALeKiK~EL 60 (487)
+|..|++++|+. +++=.++.+++..= .++++.|-+-||+.|.||
T Consensus 2 ~W~~a~i~livG---~iiG~~~~R~~~~~-~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVVG---IIIGAVAMRFGNRK-LRQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHHH---HHHHHHHHhhccch-hhHHHHHHHHHHHHHHHH
Confidence 488888766543 34444444443331 146789999999999998
No 5
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=52.85 E-value=41 Score=28.42 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011363 13 TWVVALVCSVIVIISLAVERFLHYIGKV 40 (487)
Q Consensus 13 TWaVA~Vc~v~v~iSl~~Er~lH~lgk~ 40 (487)
.|.+++-.++|+++-..+.-.+||..||
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566777777777778899999999987
No 6
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=44.26 E-value=35 Score=29.73 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=34.5
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHH-------HHHHHhhcCCchHHHHHHH
Q 011363 10 YTPTWVVALVCSVIVIISLAVERFLHY-------IGKVLKKNNQKPLFEALQK 55 (487)
Q Consensus 10 ~TPTWaVA~Vc~v~v~iSl~~Er~lH~-------lgk~l~k~~kkaL~eALeK 55 (487)
||.-|...++..+++++-.++.+.+-. +.+|+++++++.-.+||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777788887765 5678888888888887764
No 7
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=38.35 E-value=1.3e+02 Score=29.85 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011363 48 PLFEALQKIKEELMLLGFISLLLTVFQGM 76 (487)
Q Consensus 48 aL~eALeKiK~ELMLLGFISLLLtv~q~~ 76 (487)
+=.+.+||+--.....||+-|.++...+.
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~ 170 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGA 170 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988775
No 8
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=37.33 E-value=15 Score=26.48 Aligned_cols=10 Identities=60% Similarity=0.770 Sum_probs=7.4
Q ss_pred CCccccCCCC
Q 011363 344 GDLVVQPSDD 353 (487)
Q Consensus 344 G~~~v~p~D~ 353 (487)
=+|+||||||
T Consensus 23 LD~VvKPR~D 32 (32)
T TIGR03777 23 LDPVVKPRDD 32 (32)
T ss_pred cccccccCCC
Confidence 3678888876
No 9
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=31.84 E-value=1.4e+02 Score=28.58 Aligned_cols=30 Identities=37% Similarity=0.740 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011363 48 PLFEALQKIKEELMLLGFISLLLTVFQGMI 77 (487)
Q Consensus 48 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 77 (487)
+-.+.||++-.-++..||+.+.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 446788999999999999999998777654
No 10
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=26.93 E-value=1.2e+02 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=17.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHH
Q 011363 12 PTWVVALVCSVIVIISLAVERFLHY 36 (487)
Q Consensus 12 PTWaVA~Vc~v~v~iSl~~Er~lH~ 36 (487)
|.|...+...++++++++..|.-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3455556666888889998886544
No 11
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=26.12 E-value=2.1e+02 Score=34.35 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=33.2
Q ss_pred cCCC--CccccCcchHHHHHHHHHHhhhhHHHHHHHHHHHhhCCc
Q 011363 349 QPSD--DHFWFNRPRIVLILIHIILFQNSFELAFFFWIWVQYGFD 391 (487)
Q Consensus 349 ~p~D--~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~fG~~ 391 (487)
+|++ +=..++++.+....+-..++|-.+.++.|+|.++.+|+.
T Consensus 809 ~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 809 QPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred CCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 5554 346778877777777778899999999999988877753
No 12
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=25.77 E-value=46 Score=31.02 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=0.0
Q ss_pred ccccchhhhHHHHHHHHHH-HHHHHHHHHHHHH-----hhHhhhhhhhhhhhhhhhhcccccccccceEEeeec------
Q 011363 143 PLLSITALHHLHIFIFVLA-VVHVTFCALTILF-----GGAKIRKWKQWEDSASKEEHNLATVQSRRYIQVQDH------ 210 (487)
Q Consensus 143 pliS~~~lhQLHiFIFvLA-v~HV~ys~~Tm~L-----g~~Kir~Wk~WE~e~~~~~~~~~p~~~~r~~~~~qt------ 210 (487)
|++. -.+.-+++.||++| +.|.+-..++-.+ ...|.+. +..+++.+..+...|....++++-.++.
T Consensus 6 p~i~-~~~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 83 (168)
T PF01956_consen 6 PLIR-WVLLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRM-KEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQ 83 (168)
T ss_pred chHh-hhhcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHH-HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHH
Q ss_pred ccccccccc----CCCchhHHHHHHHHHHhhccCccchhHHHHHHHHhhhhcCCCCCCchHHHHHHHhhhccccceeehh
Q 011363 211 DFIKNRFQG----LGKSYVLMGWLHSFFKQFYGSVTKSDYTTLRLGFIMTHCRGNPKFNFHKYLMRTLEADFKKVVGISW 286 (487)
Q Consensus 211 ~F~~~h~~~----~~~~s~~l~Wi~cFfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FdFhkYi~RsLE~DFk~VVGIS~ 286 (487)
+.-..+.++ .--..+++.|+-.||. ||+..-.+-++...|+.-..|.+ +=-.+--.||
T Consensus 84 ~~~~~~mK~~~~~~v~~i~i~~wi~~~f~----------------g~vv~klPFpl~~~f~~~~qrgl--~~~d~~~~s~ 145 (168)
T PF01956_consen 84 EMMMMMMKPMFVTMVPQIPIFYWINYFFS----------------GFVVAKLPFPLTGRFKSMLQRGL--EGLDVSYVSS 145 (168)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh----------------hcceEEeeccccHHHhHHhhcCC--CCCcccHhHH
Q ss_pred HHHHHHHHHHh
Q 011363 287 YLWLFVVIFLL 297 (487)
Q Consensus 287 ~lW~~vvlFlL 297 (487)
..|-|.+.|-+
T Consensus 146 i~wYfL~s~~~ 156 (168)
T PF01956_consen 146 ISWYFLCSFGL 156 (168)
T ss_pred HHHHHHHHHHH
No 13
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=25.22 E-value=39 Score=34.08 Aligned_cols=38 Identities=32% Similarity=0.717 Sum_probs=26.2
Q ss_pred HHHHHHHhhhccccceeehhHHHHHHHHHHhhccCCcchhhhh
Q 011363 267 HKYLMRTLEADFKKVVGISWYLWLFVVIFLLINIDGWHTYFWI 309 (487)
Q Consensus 267 hkYi~RsLE~DFk~VVGIS~~lW~~vvlFlLlnv~Gw~~yfWl 309 (487)
+.|=-| +||+-.++| +..||-|++|++|.=. .+.++|+
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wm 62 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWM 62 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHH
Confidence 445444 899988888 7899999988765421 2555554
No 14
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=23.69 E-value=1.9e+02 Score=24.19 Aligned_cols=41 Identities=22% Similarity=0.521 Sum_probs=23.2
Q ss_pred hhccCCcchhhhh----hhHHHHHHHHhhh-----HHHHHHHHHHHHHHh
Q 011363 297 LINIDGWHTYFWI----AFVPFILLLAVGT-----KLEHIISQLAHEVAE 337 (487)
Q Consensus 297 Llnv~Gw~~yfWl----sfiPlillL~VGt-----KLq~II~~la~ei~e 337 (487)
++|..|...|-|+ +.+|++++.+.-- -|+.|.-+.|.|..-
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aReaR~ 58 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREARL 58 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778887 4566655444332 244455555555433
No 15
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=23.69 E-value=1.1e+02 Score=30.64 Aligned_cols=47 Identities=32% Similarity=0.657 Sum_probs=28.7
Q ss_pred hccccceeehhHHHHHHHHHHhhccCCcchhhhhhhHHH---HHHHHhhhHHHHH
Q 011363 276 ADFKKVVGISWYLWLFVVIFLLINIDGWHTYFWIAFVPF---ILLLAVGTKLEHI 327 (487)
Q Consensus 276 ~DFk~VVGIS~~lW~~vvlFlLlnv~Gw~~yfWlsfiPl---illL~VGtKLq~I 327 (487)
|-...+-||.|-+|++.-+..++ .+-+|+.++=+ -+++=||+|+--|
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~-----~P~~Wl~~L~lAg~gl~iKV~sKlgLI 207 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFL-----FPQYWLLALMLAGCGLLIKVGSKLGLI 207 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcchhhhhhhhhhhh
Confidence 34566788899999766544444 34567655432 3556677776543
No 16
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=22.88 E-value=2.8e+02 Score=31.38 Aligned_cols=57 Identities=18% Similarity=0.445 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----chHHHHHHHHHHHH------HHHHHHHHHHH
Q 011363 15 VVALVCSVIVIISLAVERFLHYIGKVLKKNNQ----KPLFEALQKIKEEL------MLLGFISLLLT 71 (487)
Q Consensus 15 aVA~Vc~v~v~iSl~~Er~lH~lgk~l~k~~k----kaL~eALeKiK~EL------MLLGFISLLLt 71 (487)
.+..+....+++++.++..+|.+.+|.+++++ +++.+|+++.=.=+ +.+||.+|+++
T Consensus 620 ~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s 686 (719)
T TIGR00921 620 FLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLS 686 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 34555566688889999999999999876544 45666666555433 34566666654
No 17
>PHA03105 EEV glycoprotein; Provisional
Probab=22.57 E-value=1.1e+02 Score=29.85 Aligned_cols=33 Identities=33% Similarity=0.257 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 011363 16 VALVCSVIVIISLAVERFLHYIGKVLKKNNQKP 48 (487)
Q Consensus 16 VA~Vc~v~v~iSl~~Er~lH~lgk~l~k~~kka 48 (487)
+.++|..++++..++--.-|.+.|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 356788888888888888999999999888874
No 18
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=22.56 E-value=1.1e+02 Score=32.27 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=24.4
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHH-------HHHHHHhhcCCc
Q 011363 10 YTPTWVVALVCSVIVIISLAVERFLH-------YIGKVLKKNNQK 47 (487)
Q Consensus 10 ~TPTWaVA~Vc~v~v~iSl~~Er~lH-------~lgk~l~k~~kk 47 (487)
+|+=|+..++..+++++-+++++++. .+..|+.+++++
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~~ 82 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKRR 82 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45566666666666666667888885 445687775553
No 19
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.79 E-value=1.1e+02 Score=32.09 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=27.1
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHH-------HHHHHhhcCC
Q 011363 10 YTPTWVVALVCSVIVIISLAVERFLHY-------IGKVLKKNNQ 46 (487)
Q Consensus 10 ~TPTWaVA~Vc~v~v~iSl~~Er~lH~-------lgk~l~k~~k 46 (487)
+|+=|..++++.+++++.+++++++.. +..|+.++|+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 567777777777777777788888854 4568777555
No 20
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=20.77 E-value=52 Score=26.95 Aligned_cols=13 Identities=46% Similarity=0.859 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 011363 53 LQKIKEELMLLGF 65 (487)
Q Consensus 53 LeKiK~ELMLLGF 65 (487)
+|++|+|||-+|.
T Consensus 17 ldrLK~~L~a~GL 29 (60)
T PF13297_consen 17 LDRLKSALMALGL 29 (60)
T ss_pred HHHHHHHHHHcCC
Confidence 7999999999884
No 21
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.14 E-value=1.7e+02 Score=27.52 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=37.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH---------HHHHHHHHHHHhhhc
Q 011363 12 PTWVVALVCSVIVIISLAVERFLHYIGKVLKKNNQKPLFEALQKIKEELM---------LLGFISLLLTVFQGM 76 (487)
Q Consensus 12 PTWaVA~Vc~v~v~iSl~~Er~lH~lgk~l~k~~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 76 (487)
-+|..|.+-+| |++++-.++-+|++- +-|+++.+..-|||+|.+|= .----+||=|..|+|
T Consensus 6 ~~W~~a~igLv---vGi~IG~li~Rlt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLV---VGIIIGALIARLTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46877765443 344444555555553 23456688889999998763 223456777777766
Done!