Query 011363
Match_columns 487
No_of_seqs 143 out of 239
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 06:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011363.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011363hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 25.9 16 0.0011 25.7 2.0 18 361-378 29-46 (51)
2 d1zkea1 a.30.6.1 (A:1-79) Hypo 10.7 37 0.0027 25.8 0.9 16 46-61 62-77 (79)
3 d1xrda1 f.3.1.1 (A:1-52) Light 9.6 67 0.0049 22.7 1.9 17 149-165 13-30 (52)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 9.5 23 0.0017 23.3 -0.7 12 275-286 3-14 (35)
5 d1unda_ a.14.1.1 (A:) Advillin 9.3 23 0.0017 23.4 -0.7 12 275-286 4-15 (36)
6 d1iwga8 f.35.1.1 (A:513-566,A: 7.8 2.6E+02 0.019 23.6 5.6 58 15-72 110-179 (222)
7 d1ep3a_ c.1.4.1 (A:) Dihydroor 7.5 1.6E+02 0.011 25.6 4.1 31 28-58 278-308 (311)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 7.4 2.3E+02 0.017 23.0 5.0 24 14-37 156-179 (319)
9 d1q1ha_ a.4.5.41 (A:) Transcri 6.9 37 0.0027 26.5 -0.6 7 302-308 74-80 (88)
10 d2gola1 a.61.1.1 (A:7-107) HIV 6.9 63 0.0046 25.7 0.8 15 45-59 87-101 (101)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.90 E-value=16 Score=25.73 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhhhHHH
Q 011363 361 RIVLILIHIILFQNSFEL 378 (487)
Q Consensus 361 ~llL~LIhfiLFQNAFel 378 (487)
.++|.|.|=.=|||||-|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 579999999999999976
No 2
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=10.72 E-value=37 Score=25.82 Aligned_cols=16 Identities=50% Similarity=0.661 Sum_probs=13.1
Q ss_pred CchHHHHHHHHHHHHH
Q 011363 46 QKPLFEALQKIKEELM 61 (487)
Q Consensus 46 kkaL~eALeKiK~ELM 61 (487)
=|+..+||+|+|.|+.
T Consensus 62 LK~~IdaLNKiKke~l 77 (79)
T d1zkea1 62 LKELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3578899999999973
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.59 E-value=67 Score=22.74 Aligned_cols=17 Identities=53% Similarity=0.821 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHH-HH
Q 011363 149 ALHHLHIFIFVLAVV-HV 165 (487)
Q Consensus 149 ~lhQLHiFIFvLAv~-HV 165 (487)
.+--+|.|+|+||+. |.
T Consensus 13 ~lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 13 ALVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344579999999964 54
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.50 E-value=23 Score=23.30 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=8.9
Q ss_pred hhccccceeehh
Q 011363 275 EADFKKVVGISW 286 (487)
Q Consensus 275 E~DFk~VVGIS~ 286 (487)
++||..|.|+|.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 577888888764
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.33 E-value=23 Score=23.38 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=9.2
Q ss_pred hhccccceeehh
Q 011363 275 EADFKKVVGISW 286 (487)
Q Consensus 275 E~DFk~VVGIS~ 286 (487)
++||..|.|+|.
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888875
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.78 E-value=2.6e+02 Score=23.59 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHH----------HHHHHHHHHHHH
Q 011363 15 VVALVCSVIVIISLAVERFLHYIGKVLKK--NNQKPLFEALQKIKEEL----------MLLGFISLLLTV 72 (487)
Q Consensus 15 aVA~Vc~v~v~iSl~~Er~lH~lgk~l~k--~~kkaL~eALeKiK~EL----------MLLGFISLLLtv 72 (487)
.+.+.....+++++.++..+|.+..+-++ ++.+...||..+--+|- +.+||++|++.-
T Consensus 110 ~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~~ 179 (222)
T d1iwga8 110 DVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIST 179 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcc
Confidence 44556677788999999999999988653 33355555554444443 478999998753
No 7
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=7.55 E-value=1.6e+02 Score=25.59 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 011363 28 LAVERFLHYIGKVLKKNNQKPLFEALQKIKE 58 (487)
Q Consensus 28 l~~Er~lH~lgk~l~k~~kkaL~eALeKiK~ 58 (487)
.++++++..|.+|+++++=+.+-|...++|+
T Consensus 278 ~i~~~I~~~L~~~m~~~g~~si~e~~g~~k~ 308 (311)
T d1ep3a_ 278 FVCPKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp THHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4688999999999999998999999999986
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.41 E-value=2.3e+02 Score=23.03 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=15.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 011363 14 WVVALVCSVIVIISLAVERFLHYI 37 (487)
Q Consensus 14 WaVA~Vc~v~v~iSl~~Er~lH~l 37 (487)
|.++.++.+.+.+.+++-....+-
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~ 179 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKR 179 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhH
Confidence 666777777777766665544443
No 9
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.92 E-value=37 Score=26.45 Aligned_cols=7 Identities=57% Similarity=2.243 Sum_probs=4.9
Q ss_pred Ccchhhh
Q 011363 302 GWHTYFW 308 (487)
Q Consensus 302 Gw~~yfW 308 (487)
||++|+|
T Consensus 74 gw~~Y~W 80 (88)
T d1q1ha_ 74 GWFIYYW 80 (88)
T ss_dssp CCCEEEE
T ss_pred CcEEEEE
Confidence 6777776
No 10
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=6.89 E-value=63 Score=25.72 Aligned_cols=15 Identities=53% Similarity=0.559 Sum_probs=11.7
Q ss_pred CCchHHHHHHHHHHH
Q 011363 45 NQKPLFEALQKIKEE 59 (487)
Q Consensus 45 ~kkaL~eALeKiK~E 59 (487)
.=+.=-|||+||+||
T Consensus 87 ~VkDTkEAl~kieee 101 (101)
T d2gola1 87 DVKDTKEALDKIEEE 101 (101)
T ss_dssp CCSBHHHHHHHHHHC
T ss_pred ccCchHHHHHHHhcC
Confidence 344568999999987
Done!