Query 011364
Match_columns 487
No_of_seqs 217 out of 1399
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 00:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02603 asparaginyl-tRNA synt 100.0 9E-113 2E-117 904.8 47.2 484 4-487 82-565 (565)
2 COG0017 AsnS Aspartyl/asparagi 100.0 2E-110 4E-115 848.6 38.4 428 10-487 3-435 (435)
3 PTZ00425 asparagine-tRNA ligas 100.0 6E-107 1E-111 857.9 44.8 460 25-487 77-586 (586)
4 PLN02221 asparaginyl-tRNA synt 100.0 1E-106 2E-111 858.1 43.8 478 5-487 26-572 (572)
5 PLN02532 asparagine-tRNA synth 100.0 4E-106 9E-111 854.9 41.8 477 5-486 23-632 (633)
6 TIGR00457 asnS asparaginyl-tRN 100.0 2E-105 4E-110 839.7 41.1 447 13-486 3-452 (453)
7 PRK03932 asnC asparaginyl-tRNA 100.0 1E-104 2E-109 834.6 42.7 445 11-486 3-449 (450)
8 KOG0554 Asparaginyl-tRNA synth 100.0 3E-103 8E-108 768.1 31.2 428 26-487 17-446 (446)
9 TIGR00458 aspS_arch aspartyl-t 100.0 6E-100 1E-104 793.9 41.7 418 13-486 2-427 (428)
10 PRK05159 aspC aspartyl-tRNA sy 100.0 8E-100 2E-104 796.2 39.7 423 10-486 3-436 (437)
11 PTZ00401 aspartyl-tRNA synthet 100.0 5.9E-97 1E-101 784.1 42.1 430 11-486 65-549 (550)
12 PLN02850 aspartate-tRNA ligase 100.0 1.5E-96 3E-101 781.1 40.5 426 11-486 69-529 (530)
13 PLN02502 lysyl-tRNA synthetase 100.0 4.6E-95 1E-99 770.0 41.0 440 3-482 79-550 (553)
14 TIGR00499 lysS_bact lysyl-tRNA 100.0 6.2E-95 1.3E-99 766.0 40.7 430 3-483 23-494 (496)
15 PRK12445 lysyl-tRNA synthetase 100.0 2.1E-94 4.6E-99 761.6 41.5 428 3-483 35-503 (505)
16 PRK00484 lysS lysyl-tRNA synth 100.0 3.1E-94 6.6E-99 760.7 41.2 430 3-484 24-490 (491)
17 PTZ00417 lysine-tRNA ligase; P 100.0 3.8E-93 8.3E-98 757.5 40.0 443 3-483 103-583 (585)
18 PTZ00385 lysyl-tRNA synthetase 100.0 1.5E-91 3.2E-96 746.6 41.2 442 4-483 79-564 (659)
19 COG1190 LysU Lysyl-tRNA synthe 100.0 1.5E-92 3.1E-97 720.0 29.7 441 3-483 31-500 (502)
20 COG0173 AspS Aspartyl-tRNA syn 100.0 7.9E-89 1.7E-93 695.3 36.8 412 10-485 2-560 (585)
21 TIGR00459 aspS_bact aspartyl-t 100.0 1.5E-88 3.2E-93 722.1 40.0 427 10-485 2-557 (583)
22 PRK02983 lysS lysyl-tRNA synth 100.0 1.1E-87 2.4E-92 762.6 41.0 427 2-483 630-1092(1094)
23 PLN02903 aminoacyl-tRNA ligase 100.0 8.9E-86 1.9E-90 702.8 39.4 436 9-485 58-625 (652)
24 KOG1885 Lysyl-tRNA synthetase 100.0 3.3E-88 7.2E-93 672.3 19.2 442 2-482 74-555 (560)
25 KOG0556 Aspartyl-tRNA syntheta 100.0 5.5E-86 1.2E-90 646.2 28.4 426 10-486 69-532 (533)
26 PRK00476 aspS aspartyl-tRNA sy 100.0 4.9E-84 1.1E-88 693.0 38.7 433 9-485 3-562 (588)
27 PRK12820 bifunctional aspartyl 100.0 4.3E-82 9.4E-87 680.7 38.5 434 9-485 4-578 (706)
28 KOG0555 Asparaginyl-tRNA synth 100.0 3.6E-83 7.9E-88 624.0 25.2 416 24-486 118-544 (545)
29 cd00776 AsxRS_core Asx tRNA sy 100.0 2.5E-80 5.5E-85 625.4 26.2 319 126-483 2-322 (322)
30 PRK06462 asparagine synthetase 100.0 2.9E-78 6.3E-83 612.6 25.2 318 127-486 9-334 (335)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 9.7E-78 2.1E-82 612.5 21.6 315 128-483 2-335 (335)
32 KOG2411 Aspartyl-tRNA syntheta 100.0 8.7E-73 1.9E-77 564.9 30.8 412 10-484 34-600 (628)
33 cd00775 LysRS_core Lys_tRNA sy 100.0 1.7E-70 3.6E-75 555.1 26.2 297 142-482 2-328 (329)
34 TIGR00462 genX lysyl-tRNA synt 100.0 2.4E-69 5.1E-74 541.0 24.2 290 148-478 1-304 (304)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 2.2E-68 4.7E-73 524.5 24.9 260 148-482 1-268 (269)
36 PRK09350 poxB regulator PoxA; 100.0 1.9E-63 4.1E-68 498.9 25.1 291 145-475 2-306 (306)
37 cd00777 AspRS_core Asp tRNA sy 100.0 2.8E-63 6E-68 491.0 20.9 271 148-483 1-280 (280)
38 COG2269 Truncated, possibly in 100.0 3.5E-56 7.6E-61 421.2 18.2 296 144-482 12-321 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.9 2.7E-21 5.9E-26 171.7 13.5 122 11-143 2-134 (135)
40 cd04319 PhAsnRS_like_N PhAsnRS 99.8 1E-19 2.2E-24 153.9 13.1 101 31-137 1-103 (103)
41 cd04316 ND_PkAspRS_like_N ND_P 99.8 8.1E-19 1.8E-23 149.7 12.9 101 13-123 2-105 (108)
42 cd04322 LysRS_N LysRS_N: N-ter 99.8 1.9E-18 4.2E-23 147.4 12.8 102 31-139 1-108 (108)
43 cd04318 EcAsnRS_like_N EcAsnRS 99.7 6.5E-17 1.4E-21 130.9 12.0 81 32-114 2-82 (82)
44 cd04320 AspRS_cyto_N AspRS_cyt 99.7 7.1E-17 1.5E-21 136.3 12.3 89 31-123 1-100 (102)
45 COG0016 PheS Phenylalanyl-tRNA 99.7 8.8E-17 1.9E-21 159.9 12.5 198 152-475 114-325 (335)
46 cd04321 ScAspRS_mt_like_N ScAs 99.7 1.6E-16 3.5E-21 129.8 11.5 81 31-114 1-86 (86)
47 PF01409 tRNA-synt_2d: tRNA sy 99.7 1.6E-16 3.4E-21 154.5 11.8 206 152-475 20-236 (247)
48 PRK00488 pheS phenylalanyl-tRN 99.7 2.8E-16 6.1E-21 157.2 12.9 199 152-475 111-328 (339)
49 cd04323 AsnRS_cyto_like_N AsnR 99.7 4.4E-16 9.5E-21 126.7 11.4 80 31-114 1-84 (84)
50 PLN02853 Probable phenylalanyl 99.7 1E-16 2.3E-21 166.6 8.7 216 152-476 224-473 (492)
51 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.7 8.9E-16 1.9E-20 125.2 11.3 80 31-114 1-85 (85)
52 PTZ00326 phenylalanyl-tRNA syn 99.6 2.2E-15 4.8E-20 157.6 12.2 216 152-476 232-488 (494)
53 PRK09537 pylS pyrolysyl-tRNA s 99.6 1.2E-14 2.6E-19 149.4 11.9 112 140-277 190-315 (417)
54 cd00645 AsnA Asparagine synthe 99.5 1.8E-13 3.9E-18 132.3 16.6 272 154-478 3-299 (309)
55 PRK05425 asparagine synthetase 99.5 2.4E-13 5.2E-18 132.6 17.3 277 149-478 9-309 (327)
56 TIGR02367 PylS pyrrolysyl-tRNA 99.5 3.9E-14 8.4E-19 145.2 12.4 104 148-277 239-351 (453)
57 PTZ00213 asparagine synthetase 99.5 3.6E-13 7.8E-18 131.7 17.6 68 409-478 266-335 (348)
58 PLN02788 phenylalanine-tRNA sy 99.5 4E-13 8.6E-18 137.8 14.1 102 153-276 72-179 (402)
59 cd00768 class_II_aaRS-like_cor 99.4 1.9E-13 4.1E-18 129.4 7.3 101 151-278 2-111 (211)
60 TIGR00669 asnA aspartate--ammo 99.4 1.1E-11 2.3E-16 120.9 17.1 278 148-478 5-316 (330)
61 PRK04172 pheS phenylalanyl-tRN 99.4 1.5E-11 3.2E-16 131.6 16.7 219 146-476 230-478 (489)
62 TIGR00469 pheS_mito phenylalan 99.3 7E-12 1.5E-16 129.6 12.9 67 383-475 270-338 (460)
63 TIGR00468 pheS phenylalanyl-tR 99.3 8E-11 1.7E-15 117.8 15.2 117 152-290 75-198 (294)
64 cd00773 HisRS-like_core Class 99.0 1.4E-08 3E-13 100.2 17.4 101 148-278 2-116 (261)
65 TIGR00470 sepS O-phosphoseryl- 99.0 2.3E-09 5E-14 110.3 10.8 50 244-293 208-259 (533)
66 cd00496 PheRS_alpha_core Pheny 99.0 1.4E-08 3E-13 97.5 15.7 119 153-292 5-130 (218)
67 PF01336 tRNA_anti-codon: OB-f 98.9 1.1E-08 2.4E-13 80.5 10.8 74 32-112 1-75 (75)
68 TIGR00442 hisS histidyl-tRNA s 98.7 2.1E-07 4.6E-12 97.4 14.2 103 145-278 11-131 (397)
69 KOG2784 Phenylalanyl-tRNA synt 98.7 7.6E-09 1.7E-13 102.2 2.7 143 144-293 211-384 (483)
70 PF00587 tRNA-synt_2b: tRNA sy 98.5 4.7E-07 1E-11 83.7 8.0 117 150-296 1-137 (173)
71 KOG2783 Phenylalanyl-tRNA synt 98.3 1.5E-06 3.1E-11 87.0 8.7 187 220-474 126-318 (436)
72 cd00778 ProRS_core_arch_euk Pr 98.2 2.5E-06 5.5E-11 84.2 7.4 122 147-293 31-171 (261)
73 COG0124 HisS Histidyl-tRNA syn 98.2 1.8E-05 3.9E-10 82.8 12.7 117 145-293 15-154 (429)
74 cd00670 Gly_His_Pro_Ser_Thr_tR 98.1 9.1E-06 2E-10 78.6 9.3 105 149-278 3-125 (235)
75 cd00772 ProRS_core Prolyl-tRNA 98.0 5.2E-05 1.1E-09 75.0 11.9 121 147-293 31-171 (264)
76 cd00779 ProRS_core_prok Prolyl 98.0 2.6E-05 5.5E-10 76.8 8.9 116 147-292 30-164 (255)
77 PRK00037 hisS histidyl-tRNA sy 98.0 3.1E-05 6.7E-10 81.5 9.8 116 145-291 15-149 (412)
78 COG2502 AsnA Asparagine synthe 97.9 0.00078 1.7E-08 64.3 17.6 69 407-477 246-315 (330)
79 TIGR00409 proS_fam_II prolyl-t 97.9 4.9E-05 1.1E-09 82.9 10.2 124 145-297 44-188 (568)
80 cd00774 GlyRS-like_core Glycyl 97.9 2.1E-05 4.6E-10 77.3 5.9 97 147-275 31-141 (254)
81 PRK09194 prolyl-tRNA synthetas 97.8 0.00013 2.8E-09 80.0 11.8 123 145-297 44-188 (565)
82 cd00771 ThrRS_core Threonyl-tR 97.8 8.1E-05 1.8E-09 74.9 8.7 116 147-293 29-163 (298)
83 PRK05431 seryl-tRNA synthetase 97.8 9.2E-05 2E-09 78.1 9.2 119 145-294 167-306 (425)
84 TIGR00414 serS seryl-tRNA synt 97.8 0.00011 2.3E-09 77.5 9.4 117 145-294 170-308 (418)
85 PRK12293 hisZ ATP phosphoribos 97.7 0.00017 3.6E-09 72.0 9.9 110 146-293 17-139 (281)
86 cd00770 SerRS_core Seryl-tRNA 97.7 0.0001 2.2E-09 74.2 8.4 116 145-293 49-186 (297)
87 TIGR00418 thrS threonyl-tRNA s 97.7 0.00024 5.1E-09 77.9 11.5 118 144-293 196-334 (563)
88 PRK12305 thrS threonyl-tRNA sy 97.7 0.00025 5.3E-09 78.0 10.8 123 144-297 202-344 (575)
89 PRK08661 prolyl-tRNA synthetas 97.6 0.00016 3.5E-09 77.5 8.4 121 146-292 42-181 (477)
90 TIGR00408 proS_fam_I prolyl-tR 97.6 0.00017 3.7E-09 77.2 8.5 122 147-293 37-177 (472)
91 PF13393 tRNA-synt_His: Histid 97.6 0.00035 7.6E-09 70.6 10.5 117 145-291 7-139 (311)
92 PRK12292 hisZ ATP phosphoribos 97.6 0.00029 6.4E-09 73.7 9.8 119 145-293 14-151 (391)
93 PRK12325 prolyl-tRNA synthetas 97.6 0.00034 7.3E-09 74.3 10.3 117 146-293 45-181 (439)
94 PRK00413 thrS threonyl-tRNA sy 97.6 0.00035 7.6E-09 77.7 10.8 120 143-293 265-404 (638)
95 TIGR00443 hisZ_biosyn_reg ATP 97.6 0.00027 6E-09 71.6 9.1 116 146-292 6-139 (314)
96 PRK12444 threonyl-tRNA synthet 97.5 0.00037 8.1E-09 77.5 10.1 122 147-295 273-409 (639)
97 PRK14799 thrS threonyl-tRNA sy 97.5 0.00039 8.4E-09 75.4 9.3 122 144-297 164-305 (545)
98 PLN02908 threonyl-tRNA synthet 97.5 0.00041 8.9E-09 77.6 9.8 123 144-297 317-458 (686)
99 PLN02530 histidine-tRNA ligase 97.5 0.0005 1.1E-08 74.0 10.1 118 144-293 80-217 (487)
100 PLN02972 Histidyl-tRNA synthet 97.5 0.00054 1.2E-08 76.1 10.2 121 143-293 336-471 (763)
101 PRK12420 histidyl-tRNA synthet 97.4 0.00045 9.8E-09 73.0 9.1 118 144-293 14-152 (423)
102 CHL00201 syh histidine-tRNA sy 97.4 0.00056 1.2E-08 72.4 9.6 117 146-293 16-155 (430)
103 PRK12421 ATP phosphoribosyltra 97.4 0.001 2.2E-08 69.6 10.4 119 145-293 18-154 (392)
104 PLN02837 threonine-tRNA ligase 97.4 0.00068 1.5E-08 74.9 9.6 123 144-297 243-385 (614)
105 PRK03991 threonyl-tRNA synthet 97.3 0.0014 3E-08 72.2 10.3 123 144-297 223-366 (613)
106 PRK04173 glycyl-tRNA synthetas 97.1 0.0015 3.2E-08 69.6 8.3 50 245-297 188-241 (456)
107 PRK12295 hisZ ATP phosphoribos 97.0 0.0044 9.5E-08 64.3 10.1 108 152-293 8-133 (373)
108 PLN02678 seryl-tRNA synthetase 96.9 0.0014 2.9E-08 69.3 6.0 35 146-180 172-206 (448)
109 cd04487 RecJ_OBF2_like RecJ_OB 96.9 0.01 2.3E-07 46.6 9.1 73 32-112 1-73 (73)
110 cd04489 ExoVII_LU_OBF ExoVII_L 96.7 0.023 4.9E-07 44.8 10.3 73 32-110 2-75 (78)
111 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.6 0.029 6.4E-07 46.1 10.7 76 32-114 2-79 (95)
112 COG0442 ProS Prolyl-tRNA synth 96.5 0.0065 1.4E-07 64.9 7.5 118 146-292 45-180 (500)
113 PLN02320 seryl-tRNA synthetase 96.3 0.013 2.7E-07 62.7 8.0 122 147-296 232-371 (502)
114 COG0172 SerS Seryl-tRNA synthe 96.2 0.012 2.6E-07 61.5 7.4 116 147-293 173-308 (429)
115 cd04483 hOBFC1_like hOBFC1_lik 96.2 0.051 1.1E-06 44.8 9.6 70 34-110 2-90 (92)
116 TIGR00415 serS_MJ seryl-tRNA s 96.1 0.028 6.1E-07 59.8 9.6 137 146-293 221-387 (520)
117 PRK12294 hisZ ATP phosphoribos 96.1 0.045 9.8E-07 54.3 10.4 35 145-179 4-38 (272)
118 PF13742 tRNA_anti_2: OB-fold 96.1 0.047 1E-06 45.6 8.9 77 29-110 21-98 (99)
119 PF10451 Stn1: Telomere regula 95.8 0.058 1.2E-06 53.0 9.8 78 28-113 65-148 (256)
120 PRK00960 seryl-tRNA synthetase 95.7 0.015 3.2E-07 62.5 5.5 47 245-292 337-386 (517)
121 cd04482 RPA2_OBF_like RPA2_OBF 95.7 0.098 2.1E-06 43.0 9.1 73 33-115 2-77 (91)
122 COG1107 Archaea-specific RecJ- 95.4 0.027 5.9E-07 59.9 5.9 78 27-112 211-288 (715)
123 PF04076 BOF: Bacterial OB fol 95.0 0.18 3.9E-06 42.4 8.6 82 10-110 21-102 (103)
124 cd03524 RPA2_OBF_family RPA2_O 94.9 0.27 5.9E-06 37.1 8.9 69 33-109 1-73 (75)
125 COG0441 ThrS Threonyl-tRNA syn 94.8 0.056 1.2E-06 59.0 6.5 118 146-297 218-357 (589)
126 PRK09616 pheT phenylalanyl-tRN 94.8 0.14 3E-06 56.1 9.6 113 151-292 361-488 (552)
127 COG3111 Periplasmic protein wi 94.7 0.27 5.8E-06 42.2 8.9 84 10-112 44-127 (128)
128 COG5235 RFA2 Single-stranded D 94.6 0.19 4E-06 46.9 8.3 94 9-109 39-140 (258)
129 cd04490 PolII_SU_OBF PolII_SU_ 94.6 0.49 1.1E-05 37.7 9.8 57 32-94 2-62 (79)
130 cd04485 DnaE_OBF DnaE_OBF: A s 94.4 0.27 5.8E-06 38.5 8.0 71 34-113 2-78 (84)
131 KOG2324 Prolyl-tRNA synthetase 94.1 0.21 4.6E-06 50.5 8.2 123 146-298 50-191 (457)
132 cd04492 YhaM_OBF_like YhaM_OBF 94.1 0.93 2E-05 35.6 10.7 61 45-114 18-78 (83)
133 TIGR00156 conserved hypothetic 94.0 0.61 1.3E-05 40.6 10.0 81 11-110 45-125 (126)
134 PF12869 tRNA_anti-like: tRNA_ 94.0 0.24 5.3E-06 43.9 7.8 83 11-95 44-132 (144)
135 PRK07373 DNA polymerase III su 93.9 0.31 6.8E-06 51.8 9.7 77 28-112 279-360 (449)
136 PRK15491 replication factor A; 93.1 0.57 1.2E-05 48.7 9.8 93 11-118 57-159 (374)
137 COG0423 GRS1 Glycyl-tRNA synth 93.1 0.13 2.7E-06 54.7 4.9 32 148-179 40-73 (558)
138 PRK06253 O-phosphoseryl-tRNA s 93.0 0.63 1.4E-05 49.8 10.0 33 451-483 317-351 (529)
139 PRK10053 hypothetical protein; 92.6 1.3 2.7E-05 38.9 9.7 80 12-110 50-129 (130)
140 COG4085 Predicted RNA-binding 92.2 0.94 2E-05 41.9 8.7 76 27-107 49-128 (204)
141 PRK14699 replication factor A; 92.1 1 2.2E-05 48.4 10.4 96 12-122 58-163 (484)
142 PRK05672 dnaE2 error-prone DNA 91.8 0.73 1.6E-05 54.1 9.6 79 28-114 952-1033(1046)
143 PRK07374 dnaE DNA polymerase I 91.4 0.85 1.8E-05 54.1 9.6 77 28-112 999-1080(1170)
144 cd04479 RPA3 RPA3: A subfamily 91.2 2 4.4E-05 35.9 9.2 68 27-114 13-80 (101)
145 PF08661 Rep_fac-A_3: Replicat 90.8 1.1 2.4E-05 37.9 7.4 58 27-96 16-73 (109)
146 cd00769 PheRS_beta_core Phenyl 90.5 0.88 1.9E-05 42.8 7.1 26 153-178 4-29 (198)
147 PRK06826 dnaE DNA polymerase I 90.4 1.4 3.1E-05 52.2 10.2 79 28-113 990-1073(1151)
148 PF03100 CcmE: CcmE; InterPro 90.4 4.8 0.0001 35.4 11.2 83 12-116 37-124 (131)
149 PRK05673 dnaE DNA polymerase I 90.2 0.92 2E-05 53.7 8.5 79 28-114 976-1059(1135)
150 PRK06461 single-stranded DNA-b 90.0 4.4 9.5E-05 35.5 10.7 85 11-115 4-101 (129)
151 KOG1936 Histidyl-tRNA syntheta 89.5 0.79 1.7E-05 47.6 6.2 103 146-276 72-184 (518)
152 PRK06920 dnaE DNA polymerase I 89.2 1.8 3.9E-05 51.1 9.7 77 28-112 942-1023(1107)
153 cd04484 polC_OBF polC_OBF: A s 89.2 8.3 0.00018 30.8 10.8 73 32-110 2-80 (82)
154 COG2024 Phenylalanyl-tRNA synt 89.1 0.23 4.9E-06 50.5 2.0 38 442-480 314-352 (536)
155 cd04474 RPA1_DBD_A RPA1_DBD_A: 87.9 3.2 7E-05 34.8 8.1 74 30-107 10-97 (104)
156 PRK13902 alaS alanyl-tRNA synt 87.1 0.72 1.6E-05 53.3 4.7 60 397-479 197-258 (900)
157 PRK13480 3'-5' exoribonuclease 86.3 5.8 0.00012 40.3 10.2 78 30-116 12-94 (314)
158 PRK07279 dnaE DNA polymerase I 85.5 3.8 8.2E-05 48.0 9.4 74 29-110 884-963 (1034)
159 PRK14699 replication factor A; 84.7 5.2 0.00011 43.1 9.4 83 29-117 286-378 (484)
160 cd04488 RecG_wedge_OBF RecG_we 84.5 12 0.00027 28.1 9.4 57 34-96 2-62 (75)
161 PRK07217 replication factor A; 84.1 14 0.00031 37.1 11.6 91 13-121 74-167 (311)
162 cd04491 SoSSB_OBF SoSSB_OBF: A 84.0 9 0.00019 30.3 8.5 54 45-109 22-76 (82)
163 COG3705 HisZ ATP phosphoribosy 83.5 2 4.3E-05 44.7 5.5 115 147-291 16-146 (390)
164 KOG3108 Single-stranded DNA-bi 83.4 8.2 0.00018 38.1 9.5 74 30-110 69-143 (265)
165 PRK12366 replication factor A; 83.3 7.8 0.00017 43.3 10.4 81 28-114 290-382 (637)
166 PRK12421 ATP phosphoribosyltra 83.2 0.93 2E-05 47.5 3.1 48 399-468 281-329 (392)
167 PRK07211 replication factor A; 83.1 7.6 0.00017 41.6 9.8 81 13-109 55-146 (485)
168 PRK12292 hisZ ATP phosphoribos 82.5 1.3 2.8E-05 46.4 3.8 45 399-465 274-319 (391)
169 PRK15491 replication factor A; 82.4 9.1 0.0002 39.9 9.9 81 30-117 177-268 (374)
170 COG1571 Predicted DNA-binding 81.9 6.4 0.00014 41.2 8.4 74 30-114 267-343 (421)
171 PLN02900 alanyl-tRNA synthetas 80.9 3.3 7.1E-05 48.2 6.5 25 451-475 239-263 (936)
172 COG1570 XseA Exonuclease VII, 80.0 8.2 0.00018 40.7 8.5 75 30-110 24-99 (440)
173 PRK10917 ATP-dependent DNA hel 79.6 15 0.00033 41.4 11.3 77 27-111 57-136 (681)
174 PRK07080 hypothetical protein; 79.5 2.5 5.3E-05 42.6 4.3 48 245-293 153-201 (317)
175 TIGR00443 hisZ_biosyn_reg ATP 79.3 2.4 5.1E-05 43.0 4.3 47 399-467 266-313 (314)
176 cd05694 S1_Rrp5_repeat_hs2_sc2 78.8 12 0.00026 29.2 7.3 47 33-90 7-54 (74)
177 PRK00286 xseA exodeoxyribonucl 78.5 12 0.00026 39.7 9.6 79 29-113 23-102 (438)
178 PRK14894 glycyl-tRNA synthetas 78.5 2.1 4.5E-05 45.9 3.6 32 245-279 167-202 (539)
179 KOG2509 Seryl-tRNA synthetase 78.3 5.2 0.00011 41.8 6.4 35 145-179 182-216 (455)
180 PRK07218 replication factor A; 78.1 16 0.00034 38.7 10.0 83 11-114 58-148 (423)
181 TIGR00237 xseA exodeoxyribonuc 76.5 14 0.00031 39.2 9.4 76 30-112 18-95 (432)
182 PRK13150 cytochrome c-type bio 75.4 50 0.0011 30.0 11.1 75 27-119 55-134 (159)
183 PRK12366 replication factor A; 75.0 14 0.00029 41.4 9.0 82 11-108 63-154 (637)
184 TIGR00471 pheT_arch phenylalan 74.9 16 0.00035 40.1 9.5 116 150-293 363-491 (551)
185 TIGR00344 alaS alanine--tRNA l 74.9 5.3 0.00011 46.1 5.9 25 451-475 213-237 (851)
186 PRK00036 primosomal replicatio 74.1 12 0.00026 31.6 6.4 52 60-115 48-99 (107)
187 PRK07459 single-stranded DNA-b 73.7 54 0.0012 28.3 10.6 52 61-115 46-104 (121)
188 PRK02801 primosomal replicatio 73.6 13 0.00029 31.0 6.6 48 61-112 50-100 (101)
189 PRK13165 cytochrome c-type bio 73.6 58 0.0013 29.6 11.1 75 27-119 55-134 (160)
190 KOG1035 eIF-2alpha kinase GCN2 73.5 6.2 0.00014 46.4 5.9 118 145-293 929-1055(1351)
191 PRK07211 replication factor A; 73.1 20 0.00044 38.5 9.3 79 29-116 171-260 (485)
192 PRK12293 hisZ ATP phosphoribos 72.8 3.6 7.9E-05 41.0 3.5 40 399-467 241-280 (281)
193 PRK07218 replication factor A; 72.6 38 0.00082 35.9 11.2 80 29-120 172-259 (423)
194 COG0013 AlaS Alanyl-tRNA synth 72.3 24 0.00052 40.6 10.1 29 451-479 223-251 (879)
195 PRK06386 replication factor A; 71.9 45 0.00097 34.5 11.2 87 12-120 108-202 (358)
196 TIGR00617 rpa1 replication fac 71.7 25 0.00054 39.1 10.1 93 11-117 180-287 (608)
197 CHL00201 syh histidine-tRNA sy 70.2 6.3 0.00014 41.8 4.9 18 451-468 300-317 (430)
198 PF15072 DUF4539: Domain of un 69.9 33 0.00071 27.8 7.8 60 33-97 6-65 (86)
199 PRK13254 cytochrome c-type bio 68.8 88 0.0019 28.1 11.1 85 13-119 39-127 (148)
200 PLN02734 glycyl-tRNA synthetas 65.8 2.1 4.6E-05 47.6 0.2 32 245-279 277-312 (684)
201 PRK07135 dnaE DNA polymerase I 65.7 19 0.00042 42.1 7.9 62 29-96 897-962 (973)
202 PF03590 AsnA: Aspartate-ammon 64.8 49 0.0011 32.0 9.1 125 152-298 7-143 (244)
203 TIGR00643 recG ATP-dependent D 64.3 49 0.0011 37.0 10.6 63 27-96 30-97 (630)
204 PRK12420 histidyl-tRNA synthet 64.3 7.8 0.00017 41.0 4.1 50 400-468 279-331 (423)
205 PRK08402 replication factor A; 63.6 41 0.00088 34.8 9.0 86 12-112 63-159 (355)
206 PLN02265 probable phenylalanyl 63.2 34 0.00073 38.0 9.0 28 151-178 399-426 (597)
207 COG3689 Predicted membrane pro 62.4 34 0.00074 33.5 7.6 88 24-117 170-264 (271)
208 PRK13159 cytochrome c-type bio 60.7 1.3E+02 0.0027 27.3 10.5 74 27-119 49-127 (155)
209 TIGR00389 glyS_dimeric glycyl- 60.1 2.6 5.7E-05 45.9 -0.3 33 147-179 36-69 (551)
210 cd04486 YhcR_OBF_like YhcR_OBF 59.7 78 0.0017 25.0 8.2 70 33-113 1-76 (78)
211 cd05698 S1_Rrp5_repeat_hs6_sc5 55.7 81 0.0018 23.6 7.5 48 33-89 3-54 (70)
212 PF13567 DUF4131: Domain of un 54.6 79 0.0017 27.6 8.5 62 29-97 75-146 (176)
213 PF12857 TOBE_3: TOBE-like dom 53.7 69 0.0015 23.6 6.5 50 33-89 6-56 (58)
214 cd05705 S1_Rrp5_repeat_hs14 S1 53.1 32 0.00069 26.7 4.9 48 33-89 6-60 (74)
215 PRK00448 polC DNA polymerase I 53.1 98 0.0021 38.1 11.1 82 29-114 236-322 (1437)
216 cd00673 AlaRS_core Alanyl-tRNA 52.6 55 0.0012 31.7 7.2 49 243-292 55-109 (232)
217 PRK06752 single-stranded DNA-b 51.8 39 0.00085 28.6 5.6 36 80-115 65-106 (112)
218 PF15513 DUF4651: Domain of un 51.4 17 0.00036 27.6 2.8 23 149-171 2-24 (62)
219 PRK07275 single-stranded DNA-b 51.1 38 0.00082 30.9 5.7 52 61-115 49-106 (162)
220 cd04496 SSB_OBF SSB_OBF: A sub 50.4 39 0.00086 27.2 5.3 51 59-112 44-100 (100)
221 COG1200 RecG RecG-like helicas 50.0 1.8E+02 0.0039 32.7 11.5 78 27-113 58-139 (677)
222 PF04057 Rep-A_N: Replication 50.0 1.1E+02 0.0023 25.5 7.8 61 48-113 40-100 (101)
223 PF02091 tRNA-synt_2e: Glycyl- 49.7 12 0.00025 36.7 2.2 57 396-477 120-177 (284)
224 PRK04036 DNA polymerase II sma 49.4 61 0.0013 35.2 8.0 63 28-94 152-216 (504)
225 COG2024 Phenylalanyl-tRNA synt 48.3 9.6 0.00021 39.2 1.5 49 245-293 209-259 (536)
226 TIGR01405 polC_Gram_pos DNA po 46.9 1.8E+02 0.0039 35.2 11.9 80 29-113 7-92 (1213)
227 PRK06751 single-stranded DNA-b 46.7 60 0.0013 30.0 6.4 52 61-115 49-106 (173)
228 PRK00629 pheT phenylalanyl-tRN 46.6 72 0.0016 36.7 8.4 27 152-178 490-516 (791)
229 cd00733 GlyRS_alpha_core Class 46.2 14 0.0003 35.9 2.1 57 396-477 121-178 (279)
230 cd04452 S1_IF2_alpha S1_IF2_al 45.7 65 0.0014 24.5 5.7 50 33-89 6-59 (76)
231 PF00436 SSB: Single-strand bi 45.7 39 0.00084 27.6 4.6 49 61-112 50-104 (104)
232 PRK09348 glyQ glycyl-tRNA synt 45.2 15 0.00032 35.9 2.1 58 396-478 125-183 (283)
233 PRK08486 single-stranded DNA-b 45.2 37 0.00079 31.6 4.7 37 80-116 67-109 (182)
234 PRK06863 single-stranded DNA-b 45.1 42 0.00092 30.8 5.1 52 61-115 54-111 (168)
235 cd05707 S1_Rrp5_repeat_sc11 S1 44.9 62 0.0013 24.2 5.3 48 33-89 3-54 (68)
236 PRK06958 single-stranded DNA-b 44.7 40 0.00087 31.4 4.9 52 61-115 54-111 (182)
237 cd05708 S1_Rrp5_repeat_sc12 S1 43.5 1.4E+02 0.0031 22.5 7.4 49 33-89 5-57 (77)
238 PLN02972 Histidyl-tRNA synthet 40.3 19 0.00042 40.8 2.4 49 399-468 605-655 (763)
239 KOG2298 Glycyl-tRNA synthetase 39.5 6.8 0.00015 41.4 -1.1 26 248-273 214-241 (599)
240 TIGR00621 ssb single stranded 39.4 75 0.0016 28.9 5.8 36 80-115 69-110 (164)
241 CHL00192 syfB phenylalanyl-tRN 39.1 1.2E+02 0.0026 34.5 8.5 28 151-178 400-427 (704)
242 PF03459 TOBE: TOBE domain; I 39.0 1.4E+02 0.0031 21.9 6.4 51 33-89 6-56 (64)
243 TIGR00388 glyQ glycyl-tRNA syn 38.0 21 0.00045 35.0 1.9 59 396-479 122-181 (293)
244 PRK08763 single-stranded DNA-b 38.0 57 0.0012 29.8 4.7 36 80-115 70-111 (164)
245 TIGR00594 polc DNA-directed DN 37.6 60 0.0013 38.5 6.0 36 28-65 980-1021(1022)
246 PF04046 PSP: PSP; InterPro: 36.3 46 0.00099 23.9 3.0 25 428-452 10-35 (48)
247 PRK06293 single-stranded DNA-b 35.6 69 0.0015 29.2 4.8 52 61-115 45-102 (161)
248 cd05706 S1_Rrp5_repeat_sc10 S1 35.5 1.9E+02 0.0042 21.7 7.9 49 33-89 6-57 (73)
249 PRK05813 single-stranded DNA-b 34.8 1.1E+02 0.0023 29.5 6.3 84 29-116 109-211 (219)
250 TIGR00472 pheT_bact phenylalan 34.7 1.2E+02 0.0026 35.0 7.8 23 156-178 498-520 (798)
251 PRK06763 F0F1 ATP synthase sub 34.2 89 0.0019 29.4 5.3 53 31-96 39-91 (213)
252 PRK08059 general stress protei 34.0 1.7E+02 0.0037 25.1 7.0 64 33-107 10-77 (123)
253 PRK05813 single-stranded DNA-b 33.9 2.1E+02 0.0046 27.5 8.1 81 28-115 7-103 (219)
254 PRK07274 single-stranded DNA-b 33.4 86 0.0019 27.4 5.0 35 80-114 65-104 (131)
255 COG0072 PheT Phenylalanyl-tRNA 33.4 85 0.0018 35.3 6.1 31 148-178 350-380 (650)
256 PRK00037 hisS histidyl-tRNA sy 33.0 39 0.00084 35.4 3.2 60 399-479 262-325 (412)
257 cd04472 S1_PNPase S1_PNPase: P 32.6 1.2E+02 0.0025 22.3 5.1 48 33-89 3-54 (68)
258 cd04461 S1_Rrp5_repeat_hs8_sc7 32.4 2E+02 0.0044 22.3 6.7 48 33-89 17-68 (83)
259 PF03843 Slp: Outer membrane l 32.4 1.4E+02 0.0031 27.0 6.4 77 12-97 20-108 (160)
260 cd05692 S1_RPS1_repeat_hs4 S1_ 32.0 1.2E+02 0.0026 22.1 5.1 48 33-89 3-54 (69)
261 KOG3416 Predicted nucleic acid 30.8 1.5E+02 0.0032 25.8 5.7 67 12-91 5-73 (134)
262 cd04497 hPOT1_OB1_like hPOT1_O 30.8 3.5E+02 0.0076 23.6 8.5 94 12-116 4-107 (138)
263 PF00575 S1: S1 RNA binding do 30.7 1.2E+02 0.0026 22.9 5.0 48 33-89 7-58 (74)
264 cd05689 S1_RPS1_repeat_ec4 S1_ 30.5 1.1E+02 0.0024 23.0 4.7 48 33-89 6-58 (72)
265 PRK07252 hypothetical protein; 30.0 3.6E+02 0.0077 23.2 10.8 48 33-89 6-57 (120)
266 cd05703 S1_Rrp5_repeat_hs12_sc 29.6 1.5E+02 0.0032 22.8 5.2 48 33-89 3-56 (73)
267 COG0752 GlyQ Glycyl-tRNA synth 29.2 43 0.00094 32.5 2.5 59 397-480 127-186 (298)
268 PRK06386 replication factor A; 29.1 3.3E+02 0.0071 28.3 9.0 77 13-109 4-88 (358)
269 PRK08582 hypothetical protein; 28.5 1.6E+02 0.0034 26.1 5.8 48 33-89 8-59 (139)
270 PRK05807 hypothetical protein; 28.5 3.7E+02 0.0081 23.5 8.2 65 33-109 8-75 (136)
271 PRK08182 single-stranded DNA-b 28.3 1.1E+02 0.0024 27.4 4.9 52 61-115 56-113 (148)
272 COG1098 VacB Predicted RNA bin 27.5 1.7E+02 0.0036 25.5 5.5 51 33-89 8-59 (129)
273 cd04477 RPA1N RPA1N: A subfami 27.1 65 0.0014 26.7 2.9 57 50-112 40-96 (97)
274 PRK13732 single-stranded DNA-b 26.9 1.3E+02 0.0028 27.8 5.2 38 80-117 72-117 (175)
275 smart00581 PSP proline-rich do 26.8 77 0.0017 23.4 2.9 24 429-452 15-39 (54)
276 cd05691 S1_RPS1_repeat_ec6 S1_ 26.7 2.7E+02 0.0058 20.7 7.6 48 33-89 3-54 (73)
277 cd05702 S1_Rrp5_repeat_hs11_sc 26.1 2.3E+02 0.005 21.2 5.8 48 33-89 3-56 (70)
278 PLN02530 histidine-tRNA ligase 26.0 57 0.0012 35.2 3.1 48 399-467 341-390 (487)
279 TIGR00418 thrS threonyl-tRNA s 26.0 33 0.00071 37.7 1.3 17 452-468 442-458 (563)
280 cd05693 S1_Rrp5_repeat_hs1_sc1 25.8 1.7E+02 0.0038 24.1 5.3 29 33-68 6-34 (100)
281 cd05687 S1_RPS1_repeat_ec1_hs1 25.7 1.9E+02 0.0041 21.6 5.2 48 33-89 3-54 (70)
282 COG2176 PolC DNA polymerase II 25.3 2.6E+02 0.0056 33.6 8.0 80 30-113 240-324 (1444)
283 TIGR03683 A-tRNA_syn_arch alan 25.1 30 0.00066 40.3 0.8 28 451-479 235-262 (902)
284 cd04453 S1_RNase_E S1_RNase_E: 24.4 2.7E+02 0.0059 22.3 6.1 51 33-90 10-67 (88)
285 TIGR00389 glyS_dimeric glycyl- 24.3 72 0.0016 35.0 3.5 32 245-279 185-220 (551)
286 PF03790 KNOX1: KNOX1 domain ; 24.0 64 0.0014 22.8 1.9 29 424-452 3-31 (45)
287 cd05697 S1_Rrp5_repeat_hs5 S1_ 23.8 2.2E+02 0.0047 21.2 5.2 48 33-89 3-54 (69)
288 PRK12295 hisZ ATP phosphoribos 23.8 63 0.0014 33.6 2.8 47 399-465 322-370 (373)
289 cd05685 S1_Tex S1_Tex: The C-t 23.2 2.3E+02 0.0051 20.4 5.3 48 33-89 3-54 (68)
290 PRK09010 single-stranded DNA-b 23.2 1.5E+02 0.0032 27.5 4.8 36 80-115 72-116 (177)
291 KOG1637 Threonyl-tRNA syntheta 22.9 63 0.0014 34.4 2.5 32 148-179 192-223 (560)
292 PF09104 BRCA-2_OB3: BRCA2, ol 22.8 5.5E+02 0.012 22.9 9.6 86 28-116 17-103 (143)
293 PTZ00248 eukaryotic translatio 21.8 2.8E+02 0.0061 28.2 6.9 51 33-89 20-73 (319)
294 PRK03987 translation initiatio 21.1 3.3E+02 0.0071 26.9 7.1 51 33-89 11-64 (262)
295 KOG1894 Uncharacterized conser 20.6 1.1E+02 0.0024 31.1 3.6 78 151-257 106-200 (412)
296 PRK07772 single-stranded DNA-b 20.6 1.9E+02 0.0041 27.1 5.0 32 61-95 55-86 (186)
297 cd05686 S1_pNO40 S1_pNO40: pNO 20.4 3.6E+02 0.0077 20.4 5.9 50 33-89 6-58 (73)
298 PTZ00148 40S ribosomal protein 20.3 1.6E+02 0.0036 27.8 4.5 56 37-94 42-110 (205)
299 COG3390 Uncharacterized protei 20.3 5.6E+02 0.012 24.0 7.8 62 30-95 46-111 (196)
300 cd05684 S1_DHX8_helicase S1_DH 20.2 4E+02 0.0087 20.3 8.0 51 33-89 3-58 (79)
No 1
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=8.5e-113 Score=904.84 Aligned_cols=484 Identities=88% Similarity=1.378 Sum_probs=436.6
Q ss_pred CCCccccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCC
Q 011364 4 KVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (487)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~g 83 (487)
..+++..++.|+++...-..+.++.|++|+|+|||+++|.+|+++|++|+|+++..+||||++.+...++.+..+.|+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~g 161 (565)
T PLN02603 82 AVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTG 161 (565)
T ss_pred cccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCC
Confidence 35677788899999843223346789999999999999999999999999999877899999876555666543349999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhh
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~ 163 (487)
|+|.|+|++++++++++.+||++++++||++|++++|++.+.++.+++|.++|||+|++.+++++|+||++++++|+||.
T Consensus 162 s~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~ 241 (565)
T PLN02603 162 ASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 241 (565)
T ss_pred CEEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988878899999999999999877999888889999999999999999999999999999999999999
Q ss_pred cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccC
Q 011364 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATAL 243 (487)
Q Consensus 164 ~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~ 243 (487)
++||+||+||+|++++|||+++.|.||+..+..+|+..+....++++.++..+.+.+||++++||++|||||+|++++|+
T Consensus 242 ~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l 321 (565)
T PLN02603 242 ENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATAL 321 (565)
T ss_pred HCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcc
Confidence 99999999999999999999999999876543333222222334445555555667899999999999999999999999
Q ss_pred CceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhh
Q 011364 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 323 (487)
Q Consensus 244 ~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 323 (487)
+|||+||||||||+++|+|||+||||||+|++|+|++|+|+++|++|+++++.+.+++.+++++.+.+.+.++.+.++..
T Consensus 322 ~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~ 401 (565)
T PLN02603 322 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDV 401 (565)
T ss_pred cceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777888888888
Q ss_pred hcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEE
Q 011364 324 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM 403 (487)
Q Consensus 324 ~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl 403 (487)
++.||++|||+||+++|++.+.+++...+||.+|++++|++|.+.+++++||||+|||.+++||||+.++|++++++|||
T Consensus 402 ~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDL 481 (565)
T PLN02603 402 VEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDM 481 (565)
T ss_pred cCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEE
Confidence 88899999999999999987766665678999999999999998776447999999999999999988888889999999
Q ss_pred EecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 404 LVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 404 ~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
++||+|||+||++|+|+++++.++++++|++++.|+|||++++||+|||||||||||||+|++||.+|||||++|||++|
T Consensus 482 l~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~g 561 (565)
T PLN02603 482 LVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPG 561 (565)
T ss_pred EecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 011364 484 SVEF 487 (487)
Q Consensus 484 ~~~~ 487 (487)
+|.|
T Consensus 562 ~~~~ 565 (565)
T PLN02603 562 SAEF 565 (565)
T ss_pred CCCC
Confidence 9986
No 2
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-110 Score=848.62 Aligned_cols=428 Identities=47% Similarity=0.792 Sum_probs=393.3
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V 86 (487)
.+++++|+.+. ..++.|+|+|||+++|++|+++||.|||++|+ ||||++++. ..++ +++ |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788898864 33499999999999999999999999999987 999998642 2355 677 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC-hhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcC
Q 011364 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (487)
Q Consensus 87 ~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~-~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (487)
.|+|+|++++.+.+++||++++|+|++.+..++|++++.++ .++++++|||++|++..+++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999989999999999999999666999999886 99999999999999999999999999999999999999
Q ss_pred CeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCc
Q 011364 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (487)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~k 245 (487)
||+||+||+|+++++||++++|.+ +||+.++||+||||||||+++++++|
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v------------------------------~yf~~~a~LtqS~QLyke~~~~al~r 201 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKV------------------------------DYFDKEAYLTQSPQLYKEALAAALER 201 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEE------------------------------eecCcceEEecCHHHHHHHHHHHhCc
Confidence 999999999999999999999986 68999999999999999998888999
Q ss_pred eEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhc
Q 011364 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325 (487)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 325 (487)
||+|||+||+|+++|+|||.||||+|.||+|++++|+|+++|+||+++++.+++.|+.+|++++. +.. .+.....
T Consensus 202 Vf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~---~l~~~~~ 276 (435)
T COG0017 202 VFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNS---ELKRPES 276 (435)
T ss_pred eEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cch---hhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999877753 111 1221114
Q ss_pred CCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCC-CceEEEEEE
Q 011364 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDML 404 (487)
Q Consensus 326 ~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~-~~~~~fdl~ 404 (487)
.||+||||.||+++|++.+.+. .+||+|+++++|++|.+.++. .|+||+|||.+++||||+.++|+ +++.+|||+
T Consensus 277 ~pf~ritY~eAieiL~~~~~e~---~~~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll 352 (435)
T COG0017 277 APFPRITYKEAIEILEEKGFEK---VEWGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLL 352 (435)
T ss_pred CCccEEEHHHHHHHHHhcCCcc---cCCCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEEEeee
Confidence 6899999999999999876542 689999999999999988765 47999999999999999988766 789999999
Q ss_pred ecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 405 ~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
+||+|||+|||||+|+++.|.+++++.|++++.|+|||++++||+|||||||||+|||+|++||++||||++||||++++
T Consensus 353 ~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r 432 (435)
T COG0017 353 APGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGR 432 (435)
T ss_pred cCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCC
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 011364 485 VEF 487 (487)
Q Consensus 485 ~~~ 487 (487)
+.+
T Consensus 433 ~~p 435 (435)
T COG0017 433 LYP 435 (435)
T ss_pred CCC
Confidence 864
No 3
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=5.8e-107 Score=857.94 Aligned_cols=460 Identities=51% Similarity=0.917 Sum_probs=400.8
Q ss_pred CCCCCCEEEEEEEEeeeecCC--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCC----
Q 011364 25 LDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS---- 98 (487)
Q Consensus 25 ~~~~~~~V~v~GwV~~iR~~g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~---- 98 (487)
.++.|+.|+|+|||+++|++| +++|++|+||+|...+|||++.....++.+++ |+.|++|.|+|+++.++.+
T Consensus 77 ~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~--l~~gs~v~v~G~v~~~~~~~~n~ 154 (586)
T PTZ00425 77 NKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK--CGVGCCFRFTGKLIISPVQNENK 154 (586)
T ss_pred cccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--CCCccEEEEEEEEEcCCccccCc
Confidence 466799999999999999987 49999999999877899999865445667777 9999999999999987533
Q ss_pred ----CceEEEEE-----eEEEEEccCC-C-CCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCe
Q 011364 99 ----KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF 167 (487)
Q Consensus 99 ----~~~~el~~-----~~i~vls~~~-~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF 167 (487)
++++||.+ ++++||+++. + .+|++++.++.+++|++||||+|++.++++||+||.+..++|+||.++||
T Consensus 155 ~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF 234 (586)
T PTZ00425 155 KGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGF 234 (586)
T ss_pred CCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35699998 7999999983 3 38999888899999999999999999999999999999999999999999
Q ss_pred EEEeCCeeeccCCCCCCCCceeeecCCCc-cccc---------------C----------------CCCCCCCCC-CCCC
Q 011364 168 IWISSPIITASDCEGAGEQFCVTTLIPSS-REAA---------------E----------------SPVDAIPKT-KDGL 214 (487)
Q Consensus 168 ~EV~TP~L~~~~~eg~~~~F~vt~~~~~~-~~~~---------------~----------------~~~~~~~~~-~~~~ 214 (487)
+||+||+|++++|||+++.|.|++..... +..+ . +.....+.. ....
T Consensus 235 ~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 314 (586)
T PTZ00425 235 LYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYL 314 (586)
T ss_pred EEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999997542110 0000 0 000000000 0011
Q ss_pred ccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 294 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~ 294 (487)
.+...+||++++||++|||||+|++++|++|||+|+||||||+++|+||++||||||+|++|+|++++|+++|++|++++
T Consensus 315 ~~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~ 394 (586)
T PTZ00425 315 IDYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCI 394 (586)
T ss_pred ccccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 23345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCcc
Q 011364 295 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 374 (487)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p 374 (487)
+.+++.+..++.+++.....++.+.++..++.||++|||+||+++|++.+.+++....||.++..++|++|.+.++. +|
T Consensus 395 ~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~~~~-~P 473 (586)
T PTZ00425 395 GYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFK-KP 473 (586)
T ss_pred HHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHHhcC-Cc
Confidence 99999888888876544444566777777778999999999999999876544445789999999999999986555 79
Q ss_pred EEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccc
Q 011364 375 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAG 454 (487)
Q Consensus 375 ~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G 454 (487)
|||+|||.+++||||+.++|+.++++|||++||+|||+|||+|+++++.+.+++++.|++++.|+|||++++||+|||||
T Consensus 474 vFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgG 553 (586)
T PTZ00425 474 VIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAG 553 (586)
T ss_pred EEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCce
Confidence 99999999999999988888888999999999989999999999999999999999999999999999999999999999
Q ss_pred eeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011364 455 FGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487 (487)
Q Consensus 455 ~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~~ 487 (487)
||||||||+||+||.+|||||++|||++|+|.|
T Consensus 554 fGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 554 FGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred EEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 999999999999999999999999999999986
No 4
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1e-106 Score=858.12 Aligned_cols=478 Identities=55% Similarity=0.949 Sum_probs=411.0
Q ss_pred CCccccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCC--eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCC
Q 011364 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (487)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~--i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~ 82 (487)
.|+|..+.+|++|+....++.+++|+.|+|+|||+++|.+|| ++||+|||+++.+.||||++++.. ...+. |+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~--L~~ 101 (572)
T PLN02221 26 KAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTL--VAT 101 (572)
T ss_pred cccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhc--CCC
Confidence 467778889999985544456788999999999999999985 899999999965569999986532 22235 999
Q ss_pred CcEEEEEeeEeecCC---CCceEEEEEeEEEEEccCCC-CCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHH
Q 011364 83 GASIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (487)
Q Consensus 83 gd~V~V~G~~~~~~~---~~~~~el~~~~i~vls~~~~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (487)
||+|.|+|+|++++. .++++||++++|.|||+|.. ++|++.+.++.+++|+++|||+|++.++++||+||.+.+++
T Consensus 102 ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~ai 181 (572)
T PLN02221 102 GTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFAT 181 (572)
T ss_pred ceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998764 35689999999999999974 59998888899999999999999999999999999999999
Q ss_pred HHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcc----------------------------------cccC---
Q 011364 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR----------------------------------EAAE--- 201 (487)
Q Consensus 159 R~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~----------------------------------~~~~--- 201 (487)
|+||.++||+||+||+|++++|||+++.|.|+++..... +.+.
T Consensus 182 R~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
T PLN02221 182 HSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASK 261 (572)
T ss_pred HHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccch
Confidence 999999999999999999999999999999976531000 0000
Q ss_pred --------------CCCCCC---------CCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCC
Q 011364 202 --------------SPVDAI---------PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 258 (487)
Q Consensus 202 --------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~ 258 (487)
..+.++ ..++.|..+.+.+|||+++||+||||||||++++|++|||+||||||||++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s 341 (572)
T PLN02221 262 EEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENS 341 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCC
Confidence 000000 012234444566899999999999999999998999999999999999999
Q ss_pred CCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHH
Q 011364 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE 338 (487)
Q Consensus 259 ~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~ 338 (487)
+|+||||||||||+|++|.|++|+|+++|+||+++++.+.+.|.+++.++.........+.|+...+.||+||||.||++
T Consensus 342 ~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~ 421 (572)
T PLN02221 342 HTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIE 421 (572)
T ss_pred CCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHH
Confidence 99999999999999999999999999999999999999999888887665433333344556555678999999999999
Q ss_pred HHHHh---ccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechh
Q 011364 339 LLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 415 (487)
Q Consensus 339 ~l~~~---~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~ 415 (487)
+|++. |.+++....||.+++.++|++|.+.++. +|+||+|||.+++||||+.++++..++|||||++|+|||++|+
T Consensus 422 ~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~~g~ 500 (572)
T PLN02221 422 LLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGS 500 (572)
T ss_pred HHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEECCHH
Confidence 99874 4444444679999999999999886555 7999999999999999887777788899999999999999999
Q ss_pred HhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011364 416 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487 (487)
Q Consensus 416 ~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~~ 487 (487)
+|+++++.+++++++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.+
T Consensus 501 ~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~~ 572 (572)
T PLN02221 501 QREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKADL 572 (572)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=4.1e-106 Score=854.93 Aligned_cols=477 Identities=45% Similarity=0.840 Sum_probs=417.2
Q ss_pred CCccccceeeccccCCCCCCCCCCCCEEEEEEEEeeeec-----------------------------------------
Q 011364 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA----------------------------------------- 43 (487)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~----------------------------------------- 43 (487)
..||..++.++-|+...+++...+|+.|+|.|||++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 468899999999998877788899999999999987543
Q ss_pred -----------------------------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEee
Q 011364 44 -----------------------------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (487)
Q Consensus 44 -----------------------------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~ 94 (487)
+|+++||+||||+|.++||||+++....+. +. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 338999999999998889999987644332 45 999999999999998
Q ss_pred cCC--CCceEEEEEeEEEEEccCCC-CCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEe
Q 011364 95 SQG--SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (487)
Q Consensus 95 ~~~--~~~~~el~~~~i~vls~~~~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~ 171 (487)
++. .++++||.+++|.||+++.. ++|++++.++.+++|++||||+|++.++++||+||++++++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 843 36789999999999999864 499998888999999999999999999999999999999999999999999999
Q ss_pred CCeeeccCCCCCCCCceeeecCCCcccc---------cC-C-------------CCC-----------------------
Q 011364 172 SPIITASDCEGAGEQFCVTTLIPSSREA---------AE-S-------------PVD----------------------- 205 (487)
Q Consensus 172 TP~L~~~~~eg~~~~F~vt~~~~~~~~~---------~~-~-------------~~~----------------------- 205 (487)
||+|++++|||+++.|.||++.....++ +. + .++
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 9999999999999999998754211100 00 0 000
Q ss_pred -------------CCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccccccceee
Q 011364 206 -------------AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 272 (487)
Q Consensus 206 -------------~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~ 272 (487)
...++..+..+++.+||++++||+||||||||++++|++|||+||||||||+++|+|||+||||||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceee
Confidence 0111223334466789999999999999999988899999999999999999999999999999999
Q ss_pred EEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhc-ccccccc
Q 011364 273 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLV 351 (487)
Q Consensus 273 e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~-~~~~~~~ 351 (487)
|++|+|++|+|+++|+||+++++.+.++|.+++.+++...+....+.++..+..||+||||.||+++|++.+ .+++...
T Consensus 419 Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~ 498 (633)
T PLN02532 419 EMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKP 498 (633)
T ss_pred eehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999998888877654444455566666778999999999999998763 3444456
Q ss_pred ccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc
Q 011364 352 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431 (487)
Q Consensus 352 ~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~ 431 (487)
.||.||+.++|++|++.+++ +|+||+|||.+++||||+.++|+.++++|||+++|+|||+||++|+||++.+.+++++.
T Consensus 499 ~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~ 577 (633)
T PLN02532 499 EWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEEL 577 (633)
T ss_pred ccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHc
Confidence 89999999999999987665 89999999999999999988888899999999999899999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 432 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 432 g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++|+|.
T Consensus 578 Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~ 632 (633)
T PLN02532 578 GLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKAN 632 (633)
T ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCC
Confidence 9999999999999999999999999999999999999999999999999999985
No 6
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=1.6e-105 Score=839.70 Aligned_cols=447 Identities=57% Similarity=0.965 Sum_probs=400.0
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc--cchHhHhccCCCCCcEEEEEe
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~--~~~~~~~~~~L~~gd~V~V~G 90 (487)
+|+++... ..++.|++|+|+|||+++|.+||++|++|||+++.+.||||++++. ..++.++. |+.||+|.|+|
T Consensus 3 ~~~~~~~~---~~~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQQ---VYKFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTG 77 (453)
T ss_pred cHHHHHhc---chhcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEE
Confidence 45555542 1247799999999999999999999999999994446999998763 22455667 99999999999
Q ss_pred eEeecCCCCceEEEEEeEEEEEccCC-CCCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEE
Q 011364 91 NVVPSQGSKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169 (487)
Q Consensus 91 ~~~~~~~~~~~~el~~~~i~vls~~~-~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~E 169 (487)
++.+++.+.+++||.+++++||++|. ..+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||+|
T Consensus 78 ~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~e 157 (453)
T TIGR00457 78 KVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTW 157 (453)
T ss_pred EEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 99998766778999999999999997 34899888888999999999999999999999999999999999999999999
Q ss_pred EeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEE
Q 011364 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249 (487)
Q Consensus 170 V~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI 249 (487)
|+||+|++++|||++++|.++..+. ....+||+.++||++|||+|||++++|++|||||
T Consensus 158 V~TP~l~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i 216 (453)
T TIGR00457 158 VSPPILTSNDCEGAGELFRVSTDGI---------------------DFSQDFFGKEAYLTVSGQLYLETYALALSKVYTF 216 (453)
T ss_pred ecCCeEeecCCCCCCCceEeccccc---------------------ccchhccCCccccccCHHHHHHHHhhcccCceEe
Confidence 9999999999999999998743221 0124699999999999999999889999999999
Q ss_pred ecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCc
Q 011364 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFV 329 (487)
Q Consensus 250 ~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 329 (487)
+||||||+++++||||||||||||++|+|++|+|+++|++|+++++.+.+.+..+++..+......+...+++.++.||+
T Consensus 217 ~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (453)
T TIGR00457 217 GPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFA 296 (453)
T ss_pred eeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCc
Confidence 99999999988999999999999999999999999999999999999998887777666554445566777778889999
Q ss_pred ccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCee
Q 011364 330 QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIG 409 (487)
Q Consensus 330 ~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~ 409 (487)
++||.||+++|++.+..++....||.+|+.++|++|++.++. +|+||||||.+++|||++.++++++++||||+++|+|
T Consensus 297 rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~g 375 (453)
T TIGR00457 297 RITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIG 375 (453)
T ss_pred eeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeeccCCce
Confidence 999999999999886554445679999999999999988765 7999999999999999877777789999999999989
Q ss_pred eeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 410 El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
||+|||+|+|+++++.+++++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.
T Consensus 376 Ei~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~ 452 (453)
T TIGR00457 376 EIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNIN 452 (453)
T ss_pred EEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
No 7
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-104 Score=834.56 Aligned_cols=445 Identities=62% Similarity=1.056 Sum_probs=400.5
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc--cchHhHhccCCCCCcEEEE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~--~~~~~~~~~~L~~gd~V~V 88 (487)
+.+|+++... ++.|++|+|+|||+++|.+||++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 4567888633 578999999999999999999999999999975 777776442 34667777 999999999
Q ss_pred EeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeE
Q 011364 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (487)
Q Consensus 89 ~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~ 168 (487)
+|++.+++++.+++||++++++||++|...+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877899999999999999876799998888999999999999999999999999999999999999999999
Q ss_pred EEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEE
Q 011364 169 WISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT 248 (487)
Q Consensus 169 EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfe 248 (487)
||+||+|++++|||++++|.+.+... ....+||+.++||++|||+|||++++|++||||
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~ 212 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDL---------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYT 212 (450)
T ss_pred EecCCceeccCCCCCCCceEeecccc---------------------cccccccCCCcccccCHHHHHHHHHhccCCeEE
Confidence 99999999999999999998743210 011369999999999999999988899999999
Q ss_pred EecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCC
Q 011364 249 FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328 (487)
Q Consensus 249 I~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 328 (487)
|+||||||+++|+||||||||||||++|+|++++|+++|+||+++++.+.+.+..++++.+.+.+.+..+.++..++.||
T Consensus 213 i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~ 292 (450)
T PRK03932 213 FGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPF 292 (450)
T ss_pred eeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCc
Confidence 99999999998999999999999999999999999999999999999999888888888777665555555555567899
Q ss_pred cccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCe
Q 011364 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 408 (487)
Q Consensus 329 ~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~ 408 (487)
+++||.||++++++.+.+++....||.+++..+|++|.++++. +|+||+|||.+++|||++.++++++++||||++||+
T Consensus 293 ~rity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~ 371 (450)
T PRK03932 293 PRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGI 371 (450)
T ss_pred eEeEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCC
Confidence 9999999999999887766555589999999999999885555 799999999999999987766568999999999999
Q ss_pred eeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 409 GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 409 ~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||+||++|+++++++.+++++.|++++.++||+++++||+|||||||||||||+|++||.+|||||++|||++++|.
T Consensus 372 ~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 372 GEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred ceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
No 8
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-103 Score=768.07 Aligned_cols=428 Identities=59% Similarity=0.999 Sum_probs=405.3
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 011364 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (487)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~ 105 (487)
...+++++|.|||+++|..|+++|++|+||++.++||||+++. +.+. +.+|+.|.|+|.+.-++.+++++|+.
T Consensus 17 ~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~~~~~q~iel~ 89 (446)
T KOG0554|consen 17 PRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVSKGAKQQIELN 89 (446)
T ss_pred CCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEeccchheeeeee
Confidence 5789999999999999999999999999999999999999983 2345 99999999999999998788899999
Q ss_pred EeEEEEEccCCCCCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCC
Q 011364 106 VNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185 (487)
Q Consensus 106 ~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~ 185 (487)
+++|.+++.++++||++++.++++++|+..|||.|++...+++|+||.+..++++||.+++|++|+||+||+++|||+++
T Consensus 90 ~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE 169 (446)
T KOG0554|consen 90 AEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGE 169 (446)
T ss_pred eeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccc
Q 011364 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265 (487)
Q Consensus 186 ~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~ 265 (487)
.|.||+..+ .+.+||++|+||++|.|||++.++++++|||.+||+||+|+++++|||.
T Consensus 170 ~F~vtt~~d----------------------~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLA 227 (446)
T KOG0554|consen 170 VFQVTTLTD----------------------YSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLA 227 (446)
T ss_pred eEEEEecCc----------------------ccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHh
Confidence 999986542 3468999999999999999999999999999999999999999999999
Q ss_pred cccceeeEEccCC-HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhc
Q 011364 266 EFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 344 (487)
Q Consensus 266 EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~ 344 (487)
||||||.|+||++ ++|+|+++|.+++++++.++++|.+++++..++..+.....++..+..+|.++||.||+++|++..
T Consensus 228 EFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~ 307 (446)
T KOG0554|consen 228 EFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAV 307 (446)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhc
Confidence 9999999999998 999999999999999999999999999998888888888888888888899999999999999887
Q ss_pred -cccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHH
Q 011364 345 -KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEY 423 (487)
Q Consensus 345 -~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~ 423 (487)
.+++.+++||.+|++++|++|++.+++ .||||+|||..++||||+.++++.++.+|||++||||||+|||+|+.|
T Consensus 308 t~~fk~~~kwG~~l~~ehe~yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~--- 383 (446)
T KOG0554|consen 308 TKKFKTPPKWGIDLSTEHEKYLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER--- 383 (446)
T ss_pred ccccccCcccccccchhhHHHHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh---
Confidence 667778899999999999999998886 899999999999999999998888999999999999999999999988
Q ss_pred HHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011364 424 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487 (487)
Q Consensus 424 ~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~~ 487 (487)
.+++++.|..++.++||||+++||.+||||||||+||++.+++|.+||||||||||.|+.|++
T Consensus 384 -~~~l~e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 384 -KARLKERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred -HHHHHhcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 567788999999999999999999999999999999999999999999999999999999864
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=6.2e-100 Score=793.88 Aligned_cols=418 Identities=30% Similarity=0.487 Sum_probs=371.4
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEEEEE
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V~V~ 89 (487)
.+++|... +.|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKPE------MDGQEVTFMGWVHEIRDLGGLIFVLLRDREG--LIQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCchh------hCCCEEEEEEEEEEEecCCCcEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 45666543 6789999999999999999999999999997 4999998653 23566667 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCCCcccc---ChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCC
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~---~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~g 166 (487)
|++++++...+++||.+++++|||+|..++|++.+.. +.+...++||||+|++.++++|++||.|++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887766789999999999999976788876543 4555668999999999999999999999999999999999
Q ss_pred eEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-HHhccCCc
Q 011364 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSN 245 (487)
Q Consensus 167 F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~k 245 (487)
|+||+||+|+++++||+++.|.+ +||+.++||++|||+||| ++++|++|
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v------------------------------~~~~~~~yL~~Spql~~q~li~~g~~r 201 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPI------------------------------TYFEREAFLGQSPQLYKQQLMAAGFER 201 (428)
T ss_pred CEEEeCCceecCCCCCCcceeee------------------------------EecCCcEEECcCHHHHHHHHHhcccCc
Confidence 99999999999999999999975 477899999999999997 67899999
Q ss_pred eEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhc
Q 011364 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325 (487)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 325 (487)
|||||||||||+++|+||||||||||||++|+|++|+|+++|+||+++++.+.+.+..++...+.. + ....
T Consensus 202 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~--------~-~~~~ 272 (428)
T TIGR00458 202 VYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK--------L-EKPE 272 (428)
T ss_pred EEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc--------c-ccCC
Confidence 999999999999988899999999999999999999999999999999999998876655433210 0 0124
Q ss_pred CCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCcccccccc-CCCCceEEEEEE
Q 011364 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDML 404 (487)
Q Consensus 326 ~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~-~~~~~~~~fdl~ 404 (487)
.||+++||.||++++++.|.+ ..||.+++..+|++|.+.+ . +|+||+|||.+++|||++.+ +++++++|||||
T Consensus 273 ~pf~rity~eA~~~l~~~g~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~ 346 (428)
T TIGR00458 273 GKFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKSFDLM 346 (428)
T ss_pred CCceEEEHHHHHHHHHHcCCC----CCCccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEEEEEE
Confidence 589999999999999887764 4688899999999998755 3 79999999999999997654 456799999999
Q ss_pred ecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 405 ~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
++|+ ||+||++|+++++++++++++.|++++.++|||+|++||+|||||||||+|||+|++||.+|||||++|||++++
T Consensus 347 ~~g~-Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r 425 (428)
T TIGR00458 347 YRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKR 425 (428)
T ss_pred eCCe-EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCC
Confidence 9995 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011364 485 VE 486 (487)
Q Consensus 485 ~~ 486 (487)
|.
T Consensus 426 ~~ 427 (428)
T TIGR00458 426 LT 427 (428)
T ss_pred CC
Confidence 85
No 10
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.4e-100 Score=796.21 Aligned_cols=423 Identities=31% Similarity=0.546 Sum_probs=375.3
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc--cchHhHhccCCCCCcEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~--~~~~~~~~~~L~~gd~V~ 87 (487)
++|+|+|+... ..|++|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.++. |+.||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g--~iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSG--IIQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCc--EEEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 68899999874 6799999999999999999999999999997 4999998763 23455677 99999999
Q ss_pred EEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCcc---ccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhc
Q 011364 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK---RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (487)
Q Consensus 88 V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~---~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (487)
|+|++.+++...+++||++++++|||+|..++|+... ..+.+.++++||||+|++.++++|++||.|++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987677899999999999999866887533 2356778899999999999999999999999999999999
Q ss_pred CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHH-HhccC
Q 011364 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATAL 243 (487)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~l-l~~g~ 243 (487)
+||+||+||+|++++++|+++.|.+ +||+.++||++|||+|||+ +++|+
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~------------------------------~~~~~~~~L~~Spql~~q~l~~~g~ 202 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPI------------------------------DYFEKEAYLAQSPQLYKQMMVGAGF 202 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeE------------------------------EecCCceEecCCHHHHHHHHHhcCC
Confidence 9999999999999999999998865 5789999999999999975 56779
Q ss_pred CceEEEecccccCCCCCCcccccccceeeEEccCC-HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhh
Q 011364 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 322 (487)
Q Consensus 244 ~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 322 (487)
+|||||+||||||++++.||||||||||||++|+| ++++|+++|+||+++++.+.+.+..++.+.+.. + .
T Consensus 203 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~--------~-~ 273 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE--------L-P 273 (437)
T ss_pred CcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC--------C-C
Confidence 99999999999999987899999999999999998 999999999999999999988776666544321 1 1
Q ss_pred hhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhcc---ccCccEEEEecCCcCccccccccC-CCCce
Q 011364 323 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA---FGGCPVIVSDYPKEIKAFYMRQND-DGRTV 398 (487)
Q Consensus 323 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~---~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~ 398 (487)
..+.||+++||.||++++++.+.+ ..||.+++.+.|+.|.+.+ +...|+||+|||.+++|||++.++ +++++
T Consensus 274 ~~~~~f~rit~~eA~~~l~~~~~~----~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~ 349 (437)
T PRK05159 274 VPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEIS 349 (437)
T ss_pred cCCCCceEeEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEE
Confidence 234689999999999999887753 4578889999998876433 111389999999999999987654 45789
Q ss_pred EEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 399 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 399 ~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
+|||||++|+ ||+||++|++++++++++++++|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|
T Consensus 350 ~~fdl~~~g~-Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~F 428 (437)
T PRK05159 350 KSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLF 428 (437)
T ss_pred EEEEEEECCE-EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeec
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 011364 479 PRTPGSVE 486 (487)
Q Consensus 479 Pr~~~~~~ 486 (487)
||+|++|.
T Consensus 429 Pr~~~~~~ 436 (437)
T PRK05159 429 PRDRHRLT 436 (437)
T ss_pred cCCCCCCC
Confidence 99999985
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-97 Score=784.06 Aligned_cols=430 Identities=26% Similarity=0.415 Sum_probs=366.0
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc----cchHhHhccCCCCCcEE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGASI 86 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~----~~~~~~~~~~L~~gd~V 86 (487)
.+.|++|... ...|+.|+|+|||+++|.+||++|++|||+++ +||+|++.+. ..++.+.. |+.||+|
T Consensus 65 ~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~--~iQ~v~~~~~~~~~~~~~~~~~--l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSD--SVQAMAAVEGDVPKEMIDFIGQ--IPTESIV 135 (550)
T ss_pred eEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCc--CEEEEEECCCccCHHHHHHHhc--CCCCCEE
Confidence 4778888653 23799999999999999999999999999997 5999997442 12444667 9999999
Q ss_pred EEEeeEeecC-----CCCceEEEEEeEEEEEccCCCCCCCCcccc-----------ChhhhhhcccccCCChhhHHHHHH
Q 011364 87 WIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVARV 150 (487)
Q Consensus 87 ~V~G~~~~~~-----~~~~~~el~~~~i~vls~~~~~~p~~~~~~-----------~~~~~r~~r~l~~R~~~~~~~~~~ 150 (487)
.|+|+|++.+ +..+++||++++++|||+|...+|++.++. +.+...++||||+|++.++++|++
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~ 215 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHH
Confidence 9999999742 345789999999999999987788875432 345555999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||.|++++|+||.++||+||+||+|+++++||+++.|.+ +||+.++||+|
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v------------------------------~yf~~~~~L~q 265 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL------------------------------EYFNRFAYLAQ 265 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc------------------------------ccCCCCeecCC
Confidence 999999999999999999999999999999999999975 58899999999
Q ss_pred chhhhHHHHh-ccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhccCccccccc
Q 011364 231 SGQLNAETYA-TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFF 308 (487)
Q Consensus 231 Spql~l~ll~-~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~ 308 (487)
|||||||+++ +|++||||||||||||+++|+||||||||||||++|. +|+++|+++|+||.+++..+.+.+ .++...
T Consensus 266 Spql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~-~ei~~~ 344 (550)
T PTZ00401 266 SPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHT-KELKAV 344 (550)
T ss_pred CHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHccc-hhhhhh
Confidence 9999998655 6899999999999999999899999999999999986 799999999999999999887652 232222
Q ss_pred cc---c-----cc--------------------chhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchH
Q 011364 309 NT---W-----IE--------------------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360 (487)
Q Consensus 309 ~~---~-----~~--------------------~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~ 360 (487)
.. + .. ..+.+.+.. ++.+|+||+|.||+++|++.+. ....|+.|++++
T Consensus 345 ~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~dl~~~ 420 (550)
T PTZ00401 345 CQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTDDINTT 420 (550)
T ss_pred ccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCcccccCch
Confidence 10 0 00 011122222 3567999999999999998752 224678899999
Q ss_pred HHhhhh---hccccCccEEEEe-cCCcCcccccccc-CCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCc
Q 011364 361 HERYLT---EEAFGGCPVIVSD-YPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 435 (487)
Q Consensus 361 ~e~~l~---e~~~~~~p~fi~~-~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~ 435 (487)
.|++|. ++.++ .|+||+| ||.+++|||++.+ +|+++++|||||++| +||+||++|+||+++|.+++++.|+++
T Consensus 421 ~E~~L~~~v~~~~~-~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~ 498 (550)
T PTZ00401 421 NEKLLGKLVKERYG-TDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKMLNVDL 498 (550)
T ss_pred HHHHHHHHHHHhcC-CCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHHcCCCc
Confidence 999874 44444 7999998 9999999986554 566899999999999 599999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 436 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 436 ~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
..++|||++++||+|||||||||+|||+|++||.+|||||++|||+|+||.
T Consensus 499 ~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 499 TPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred hhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999984
No 12
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=1.5e-96 Score=781.13 Aligned_cols=426 Identities=27% Similarity=0.454 Sum_probs=364.7
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-----chHhHhccCCCCCcE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGAS 85 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-----~~~~~~~~~L~~gd~ 85 (487)
.+.|++|.. ++.|+.|+|+|||+++|.+||++|++|||+++ +||||+..+.. .++.+.. |+.||+
T Consensus 69 ~~~i~~l~~------~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~ 138 (530)
T PLN02850 69 WTDVSDLGE------ELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRESV 138 (530)
T ss_pred EeEhhhcch------hhCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCCE
Confidence 466777765 37899999999999999999999999999986 59999986531 1344566 999999
Q ss_pred EEEEeeEeecC----CCCceEEEEEeEEEEEccCCCCCCCCccc--------------------cChhhhhhcccccCCC
Q 011364 86 IWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPRT 141 (487)
Q Consensus 86 V~V~G~~~~~~----~~~~~~el~~~~i~vls~~~~~~p~~~~~--------------------~~~~~~r~~r~l~~R~ 141 (487)
|.|+|+|++.+ +.++++||++++|+|||+|...+|++.++ .+.+...++||||+|+
T Consensus 139 V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~ 218 (530)
T PLN02850 139 VDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRT 218 (530)
T ss_pred EEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcC
Confidence 99999999542 23458999999999999998778886543 1234455899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 142 ~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
+.++++||+||.|++.+|+||.++||+||+||+|+++++||++++|.+ +|
T Consensus 219 ~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v------------------------------~y 268 (530)
T PLN02850 219 PANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL------------------------------DY 268 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee------------------------------cc
Confidence 999999999999999999999999999999999999999999999975 58
Q ss_pred cCcccccccchhhhHHH-HhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhc
Q 011364 222 FEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILD 299 (487)
Q Consensus 222 ~~~~~~L~~Spql~l~l-l~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~ 299 (487)
|++++||++|||||||+ +++|++||||||||||||+++|+|||||||||||||+|. +|+|+|+++|+||++++..+.+
T Consensus 269 f~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~ 348 (530)
T PLN02850 269 KGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNE 348 (530)
T ss_pred CCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999974 678999999999999999999999999999999999998 5999999999999999999988
Q ss_pred cCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhh---ccccCccEE
Q 011364 300 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVI 376 (487)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~f 376 (487)
.+..++..+...... +.+ +.+ .++++++|.||+++|++.|.+. .++.|++.+.|+.|.. ..++..++|
T Consensus 349 ~~~~el~~i~~~~~~---~~~-~~~-~~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~~~~~i 419 (530)
T PLN02850 349 RCKKELEAIREQYPF---EPL-KYL-PKTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYGTDFYI 419 (530)
T ss_pred hhhhhHHhhcccCCc---chh-hhc-CCcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcCCCeEE
Confidence 776666544321110 111 112 2678999999999999987643 3567899999987743 223313577
Q ss_pred EEecCCcCcccccccc-CCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccce
Q 011364 377 VSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 455 (487)
Q Consensus 377 i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~ 455 (487)
|+|||.+++|||++.+ +|+++++|||||++| +||+||++|+|+++.|++++++.|++++.++|||++++||+||||||
T Consensus 420 i~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~ 498 (530)
T PLN02850 420 LHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGF 498 (530)
T ss_pred EECCccccCchhccccCCCCCeEEEEEEEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceE
Confidence 8999999999986554 566899999999999 59999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 456 GLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 456 giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||||||+||+||++|||||++|||+|++|.
T Consensus 499 GiGlERLvM~l~g~~nIr~v~~FPR~p~rl~ 529 (530)
T PLN02850 499 GVGLERVVMLFCGLNNIRKTSLFPRDPQRLA 529 (530)
T ss_pred EEcHHHHHHHHcCCCchheEeecCCCCCCCC
Confidence 9999999999999999999999999999984
No 13
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=4.6e-95 Score=770.02 Aligned_cols=440 Identities=20% Similarity=0.272 Sum_probs=376.6
Q ss_pred CCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-----chHh
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQ 74 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-----~~~~ 74 (487)
|+.|+|.++++++|+.+.|.+ +.+..++.|+|+|||+++|.+||++|++|+|++| .||||++.+.. .|..
T Consensus 79 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g--~iQv~~~~~~~~~~~~~~~~ 156 (553)
T PLN02502 79 PYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGG--KIQLYADKKRLDLDEEEFEK 156 (553)
T ss_pred CCCCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCc--cEEEEEECccccchhHHHHH
Confidence 788999999999999887753 4456788999999999999999999999999996 59999986532 2555
Q ss_pred H-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHH
Q 011364 75 V-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVAR 149 (487)
Q Consensus 75 ~-~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~ 149 (487)
+ +. |+.||+|+|+|++.+++++ ++||.+++++|||+|. .|+|.+.++ .+...++||||++ ++..+++|+
T Consensus 157 ~~~~--l~~gdiV~V~G~~~~t~~g--elel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r 230 (553)
T PLN02502 157 LHSL--VDRGDIVGVTGTPGKTKKG--ELSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFR 230 (553)
T ss_pred HHhC--CCCCcEEEEEEEEEecCCC--CEEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHH
Confidence 5 35 9999999999999998865 8999999999999997 566666554 3334479999995 889999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (487)
+||+|+++||+||.++||+||+||+|+++++++++.+|. |++ ++|+.++||+
T Consensus 231 ~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~ 282 (553)
T PLN02502 231 TRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFV-THH---------------------------NDLNMDLYLR 282 (553)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeeccCCCcccccee-eec---------------------------ccCCcceeee
Confidence 999999999999999999999999999987766778895 432 3678999999
Q ss_pred cchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCc-----c
Q 011364 230 VSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----E 303 (487)
Q Consensus 230 ~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~-----~ 303 (487)
+|||||| +|+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||+++++.+.+.+. .
T Consensus 283 ~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~ 361 (553)
T PLN02502 283 IATELHLKRLVVGGFERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGI 361 (553)
T ss_pred cCHHHHHHHHHHhccCCEEEEcCeeeCCCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCc
Confidence 9999998 57889999999999999999995 699999999999999999999999999999999999986653 3
Q ss_pred ccccccccccchhhhhhhhhhcCCCcc-cCHHHHHHHHHH----hccccccccccccccchHHHhhhhhccccCccEEEE
Q 011364 304 DMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIK----AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVS 378 (487)
Q Consensus 304 ~l~~~~~~~~~~~~~~l~~~~~~~~~~-it~~ea~~~l~~----~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~ 378 (487)
++++..+|.+.++.+.++++.+.+|+. +++.++.+.|.+ .++++.....||..+...++.++.+.+ . +|+||+
T Consensus 362 ~i~~~~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l-~-~PtFV~ 439 (553)
T PLN02502 362 EIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETL-V-QPTFVL 439 (553)
T ss_pred cccCCCCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhc-C-CCEEEE
Confidence 456667788888999999988888877 888888765543 455444445788888888888877654 4 799999
Q ss_pred ecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc----CC-Ccc--cH-HHHHHHHhcCCC
Q 011364 379 DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL----KL-NRD--SY-WWYLDLRHYGSV 450 (487)
Q Consensus 379 ~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~----g~-~~~--~~-~~yl~~~~~G~p 450 (487)
|||.+++|||++.++++++++|||||++|+ ||+||+++++|+.+|++++.++ +. +.+ .+ ++||+|++||||
T Consensus 440 dyP~~~splak~~~~~p~~~erFELfi~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmP 518 (553)
T PLN02502 440 DHPVEMSPLAKPHRSKPGLTERFELFINGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLP 518 (553)
T ss_pred CCccccCcccccCCCCCCeEEEEEEEeCCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCC
Confidence 999999999987777889999999999997 9999999999999888777532 22 111 23 569999999999
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
||||||||||||+|+|||..|||||++||+..
T Consensus 519 P~gG~GiGiDRLvMlltg~~sIrdVi~FP~~k 550 (553)
T PLN02502 519 PTGGWGLGIDRLVMLLTDSASIRDVIAFPAMK 550 (553)
T ss_pred CCceEEehHHHHHHHHcCCcchheeecCCcCC
Confidence 99999999999999999999999999999865
No 14
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=6.2e-95 Score=765.96 Aligned_cols=430 Identities=20% Similarity=0.319 Sum_probs=356.1
Q ss_pred CCCCccccceeeccccCCCCC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV 75 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~----~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~ 75 (487)
|+.++|.++++++++.+.|.+ .....++.|+|+|||+++|.+||++|++|+|++| .||+|++.+.. .++.+
T Consensus 23 ~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g--~iQ~~~~~~~~~~~~~~~~ 100 (496)
T TIGR00499 23 PYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESG--QIQLYVNKDDLPEDFYEFD 100 (496)
T ss_pred CCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCc--cEEEEEECCcCcHHHHHHH
Confidence 788999999999999887753 1124478899999999999999999999999996 49999987542 23333
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccCh---hhhhhcccccCCC-hhhHHHHHHH
Q 011364 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRT-NTFGAVARVR 151 (487)
Q Consensus 76 ~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~---~~~r~~r~l~~R~-~~~~~~~~~R 151 (487)
+. .|+.||+|.|+|++.+++++ ++||++++++|||+|. .|+|.+.++. +...++||||+|. +.++++|++|
T Consensus 101 ~~-~l~~gd~V~v~G~~~~t~~g--elel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~R 175 (496)
T TIGR00499 101 EY-LLDLGDIIGVTGYPFKTKTG--ELSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVR 175 (496)
T ss_pred Hh-cCCCCCEEEEEEEEEECCCC--cEEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 32 28999999999999998764 7999999999999997 5666665543 4445799999995 6999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
|+|++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||++|
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t-~~---------------------------~~~~~~~yLriS 227 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT-HH---------------------------NALDMDLYLRIA 227 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEe-ec---------------------------ccCCCceEEecC
Confidence 99999999999999999999999999887777789953 33 246899999999
Q ss_pred hhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccc
Q 011364 232 GQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310 (487)
Q Consensus 232 pql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~ 310 (487)
||||| +|+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||+++++.+.+.+...+. +
T Consensus 228 pELylKrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~--~- 303 (496)
T TIGR00499 228 PELYLKRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYG--E- 303 (496)
T ss_pred HHHHHHHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecC--c-
Confidence 99998 57899999999999999999995 6999999999999999999999999999999999999866543211 0
Q ss_pred cccchhhhhhhhhhcCCCcccCHHHHHHHHHH-hccc--------------------c-ccccccccccchHHHhhhhhc
Q 011364 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-AKKK--------------------F-EFLVKWGCDLQSEHERYLTEE 368 (487)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-~~~~--------------------~-~~~~~~~~~l~~~~e~~l~e~ 368 (487)
....+..||+++||.||++++.+ .|++ + .....||..+...++.++.+.
T Consensus 304 ---------~~~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~ 374 (496)
T TIGR00499 304 ---------LEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHT 374 (496)
T ss_pred ---------eeccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhc
Confidence 00123457888888888886642 2321 1 111234555666677766544
Q ss_pred cccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHH------HcCCCcccH--HH
Q 011364 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WW 440 (487)
Q Consensus 369 ~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~------~~g~~~~~~--~~ 440 (487)
+. +|+||+|||.+++||+++.++++.+++|||||++|+ ||+||++|++|+.+|+++++ +.|.+++.+ +|
T Consensus 375 -l~-~P~fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~ 451 (496)
T TIGR00499 375 -LI-QPTFITHYPAEISPLAKRNPSNPEFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDED 451 (496)
T ss_pred -cC-CCEEEECCchhcCcccccCCCCCCeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHH
Confidence 44 799999999999999776666678999999999997 99999999999999998865 457776654 79
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 441 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 441 yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
||+|++||||||||||||||||+|++||.+|||||++||+...
T Consensus 452 yl~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 452 FVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred HHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 9999999999999999999999999999999999999999864
No 15
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-94 Score=761.63 Aligned_cols=428 Identities=20% Similarity=0.321 Sum_probs=352.4
Q ss_pred CCCCccccceeeccccCCCCC--CC--CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchH-h
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE--GL--DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-Q 74 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~--~~--~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~-~ 74 (487)
|+.++|.++++++++.+.|.+ .+ ...++.|+|+|||+++|.+||++|++|+|++| +||||++.+. ..|+ .
T Consensus 35 py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g--~iQ~~~~~~~~~~~~~~~~ 112 (505)
T PRK12445 35 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQ 112 (505)
T ss_pred CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCc--cEEEEEECCccchhhHHHH
Confidence 788999999999999887753 11 24477899999999999999999999999996 5999998653 2344 3
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHH
Q 011364 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARV 150 (487)
Q Consensus 75 ~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~ 150 (487)
++. |+.||+|+|+|++.+++++ ++||.+++++|||+|. .|+|.+.++ .+...++||||+| ++..+++|++
T Consensus 113 ~~~--l~~Gd~V~v~G~~~~t~~g--elel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~ 186 (505)
T PRK12445 113 FKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVV 186 (505)
T ss_pred Hhc--CCCCCEEEEEEEEEecCCC--cEEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHH
Confidence 566 9999999999999998854 8999999999999997 566655544 3444489999999 5799999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||+|++++|+||.++||+||+||+|+++.+++++.+| +|++ ++|+.++||++
T Consensus 187 Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF-~t~~---------------------------~~~~~~~yL~~ 238 (505)
T PRK12445 187 RSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF-ITHH---------------------------NALDLDMYLRI 238 (505)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccce-eccc---------------------------ccCCcceeeec
Confidence 9999999999999999999999999987665566788 4443 36789999999
Q ss_pred chhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccccccc
Q 011364 231 SGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309 (487)
Q Consensus 231 Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~ 309 (487)
|||||| +|+++|++||||||||||||++ +.||||||||||||++|+||+++|+++|+||+++++.+.+.+... +..
T Consensus 239 SpELylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~--~~~ 315 (505)
T PRK12445 239 APELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVT--YGE 315 (505)
T ss_pred CHHHHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhccccee--cCc
Confidence 999998 5889999999999999999999 899999999999999999999999999999999999987654321 110
Q ss_pred ccccchhhhhhhhhhcCCCcccCHHHHHHHHHH-------------------hcccccccccccc-ccchHHHhhhhhcc
Q 011364 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-------------------AKKKFEFLVKWGC-DLQSEHERYLTEEA 369 (487)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-------------------~~~~~~~~~~~~~-~l~~~~e~~l~e~~ 369 (487)
.. --+..||+++||.||++.+.. .+.+.. ..|+. .+-.+...+++++.
T Consensus 316 ~~----------i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~vE~~ 383 (505)
T PRK12445 316 HV----------FDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEAH 383 (505)
T ss_pred ee----------ccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHhh
Confidence 00 012357778888887776642 122211 12332 23344455566766
Q ss_pred ccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CCCccc-H-HHH
Q 011364 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS-Y-WWY 441 (487)
Q Consensus 370 ~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~~~~~-~-~~y 441 (487)
+. +|+||+|||.+++|||++.++++++++|||||++|+ ||+||++|++|+++|+++++++ |.++.. + +||
T Consensus 384 l~-~P~Fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~y 461 (505)
T PRK12445 384 LI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDY 461 (505)
T ss_pred cC-CCEEEECCCchhCcccccCCCCCCceEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHH
Confidence 65 899999999999999987667778999999999997 9999999999999999998743 655443 3 789
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 442 l~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|+|++||||||||||||||||+|++||.+|||||++||+.+.
T Consensus 462 l~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 462 VTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred HHHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 999999999999999999999999999999999999999864
No 16
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-94 Score=760.67 Aligned_cols=430 Identities=21% Similarity=0.324 Sum_probs=352.4
Q ss_pred CCCCccccceeeccccCCCCC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQV 75 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~----~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~ 75 (487)
|+.++|.++++++++...+.+ .....++.|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.+
T Consensus 24 ~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~ 101 (491)
T PRK00484 24 PYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSG--RIQLYVSKDDVGEEALEAF 101 (491)
T ss_pred CCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCc--cEEEEEECCcCCHHHHHHH
Confidence 688999999999999887643 1112247899999999999999999999999997 4999998764 236667
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHHH
Q 011364 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVR 151 (487)
Q Consensus 76 ~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~R 151 (487)
+. |+.||+|.|+|++.+++++ ++||.+++++|||+|.. |+|.+.++ .+...++||||+| ++.++++|++|
T Consensus 102 ~~--l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~--plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~R 175 (491)
T PRK00484 102 KK--LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLR--PLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKR 175 (491)
T ss_pred hc--CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCC--CCCcccccccchhhhccceeeehhcCHHHHHHHHHH
Confidence 77 9999999999999998764 89999999999999974 45444433 3333489999997 78999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
|+|++++|+||.++||+||+||+|+++++++++++|. +++ +||+.++||++|
T Consensus 176 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~-t~~---------------------------~~~~~~~yL~~S 227 (491)
T PRK00484 176 SKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFI-THH---------------------------NALDIDLYLRIA 227 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeccCCCccceeee-ecc---------------------------ccCCCceEeccC
Confidence 9999999999999999999999999887666678995 322 477899999999
Q ss_pred hhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccc
Q 011364 232 GQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310 (487)
Q Consensus 232 pql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~ 310 (487)
|||||| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+ .+.+.+.
T Consensus 228 pql~lk~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~--~i~~~~~ 304 (491)
T PRK00484 228 PELYLKRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTT--KVTYQGT 304 (491)
T ss_pred HHHHHHHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc--eEecCCE
Confidence 999995 7789999999999999999995 69999999999999999999999999999999999987643 2332221
Q ss_pred cccchhhhhhhhhhcCCCcccCHHHHHHHHHH-----------------hccccccccccccccchHHHhhhhhccccCc
Q 011364 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-----------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373 (487)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-----------------~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~ 373 (487)
. ..+..||+++||.||++.+.. .+.+......||..+...++.+ +++.+. +
T Consensus 305 ~----------~~~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-ve~~~~-~ 372 (491)
T PRK00484 305 E----------IDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEF-VEPKLI-Q 372 (491)
T ss_pred e----------ecCCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-hhhhcC-C
Confidence 0 013458889999998877532 1111111112333344445554 455555 7
Q ss_pred cEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CCCcc-cH-HHHHHHH
Q 011364 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRD-SY-WWYLDLR 445 (487)
Q Consensus 374 p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~~~~-~~-~~yl~~~ 445 (487)
|+||+|||.+++|||++.++++++++|||||++|+ ||+||++|++++.+|++++++. |.++. .+ +|||+|+
T Consensus 373 P~Fi~dyP~~~~pf~k~~~~~~~~~~rFdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~ 451 (491)
T PRK00484 373 PTFITDYPVEISPLAKRHREDPGLTERFELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRAL 451 (491)
T ss_pred cEEEECCChHHhhhhccCCCCCCeEEEEEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHH
Confidence 99999999999999987777788999999999998 9999999999999999888642 43332 24 6899999
Q ss_pred hcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 446 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 446 ~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
+||+|||||||||||||+|++||.+|||||++||+....
T Consensus 452 ~~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP~~~~~ 490 (491)
T PRK00484 452 EYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFPLMRPE 490 (491)
T ss_pred HCCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCCCCCCC
Confidence 999999999999999999999999999999999998753
No 17
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=3.8e-93 Score=757.51 Aligned_cols=443 Identities=16% Similarity=0.243 Sum_probs=371.7
Q ss_pred CCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc-----cchH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYD 73 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~-----~~~~ 73 (487)
|+.++|.++++++++.+.|.+ ++...+..|+|+|||+++|.+| |++|++|+|.+| .||||++.+. ..|+
T Consensus 103 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~ 180 (585)
T PTZ00417 103 PYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFA 180 (585)
T ss_pred CCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHH
Confidence 788999999999999887753 2222345699999999999998 799999999886 5999998652 2354
Q ss_pred h-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChhhhhhcccccCC-ChhhHHHHHHH
Q 011364 74 Q-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVR 151 (487)
Q Consensus 74 ~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R-~~~~~~~~~~R 151 (487)
. .+. |+.||+|+|+|.+.+++++ ++||.++++++|++|..++|..-...+.+...++||||+| ++..+++|++|
T Consensus 181 ~~~~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~R 256 (585)
T PTZ00417 181 ECYDK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITR 256 (585)
T ss_pred HHHhc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHH
Confidence 4 356 9999999999999988754 8999999999999998656653112233434479999998 77999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
|+|+++||+||.++||+||+||+|+++.+++++.+|. |+++ +++.++||++|
T Consensus 257 S~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~n---------------------------~~d~~lYLriS 308 (585)
T PTZ00417 257 TKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THHN---------------------------DLDLDLYLRIA 308 (585)
T ss_pred HHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-eccc---------------------------CCCcceEEeec
Confidence 9999999999999999999999999987656667884 5443 45788999999
Q ss_pred hhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCc--------
Q 011364 232 GQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-------- 302 (487)
Q Consensus 232 pql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~-------- 302 (487)
||||| +|+++|++||||||||||||++ ++||||||||||||++|+||+|+|+++|+||++++..+.+...
T Consensus 309 pEL~lKrLlvgG~~rVfeIgp~FRnE~~-~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~ 387 (585)
T PTZ00417 309 TELPLKMLIVGGIDKVYEIGKVFRNEGI-DNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGP 387 (585)
T ss_pred HHHHHHHHHHhCCCCEEEEcccccCCCC-CCCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeeccccc
Confidence 99998 5889999999999999999999 4799999999999999999999999999999999998875421
Q ss_pred ----cccccccccccchhhhhhhhhhcCCCc-----ccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCc
Q 011364 303 ----EDMDFFNTWIEKGIIDRLSTVAERDFV-----QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373 (487)
Q Consensus 303 ----~~l~~~~~~~~~~~~~~l~~~~~~~~~-----~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~ 373 (487)
.++++..+|.+.++.+.++++++.++. ..+++++++++++.|+++.....|+..++..++.++.+.+.+ +
T Consensus 388 ~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~-~ 466 (585)
T PTZ00417 388 EKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN-K 466 (585)
T ss_pred ccccccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-C
Confidence 234555677777888899888887654 258999999999888766555567777888888887766553 6
Q ss_pred cEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHH------HcCCCcccH--HH-HHHH
Q 011364 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WW-YLDL 444 (487)
Q Consensus 374 p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~------~~g~~~~~~--~~-yl~~ 444 (487)
|+||+|||.+++|||+...+++++++|||||++|+ ||+||+++++|+.+|+++++ +.| +.+.+ ++ ||+|
T Consensus 467 PtFI~dyP~~~sPLak~~~~dp~v~eRFELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~A 544 (585)
T PTZ00417 467 PFFIIEHPQIMSPLAKYHRSKPGLTERLEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTS 544 (585)
T ss_pred cEEEECCChhhCchhhhcCCCCCeEEeEEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHH
Confidence 99999999999999976666788999999999997 99999999999999887654 335 44443 33 9999
Q ss_pred HhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 445 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 445 ~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
++||||||||||||||||+|++||.+|||||++||++..
T Consensus 545 leyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 545 LEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred HHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 999999999999999999999999999999999999864
No 18
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-91 Score=746.58 Aligned_cols=442 Identities=16% Similarity=0.222 Sum_probs=350.6
Q ss_pred CCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc----chHhH-
Q 011364 4 KVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV- 75 (487)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~----~~~~~- 75 (487)
.+++|.++++++++.++|.+ +....++.|+|+|||+++|.+||++|++|||++| .||||++.+.. .++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G--~IQvv~~~~~~~~~~~~~~~~ 156 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGN--ELQVVGQVGEHFTREDLKKLK 156 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCc--eEEEEEECCccCCHHHHHHHH
Confidence 57899999999999988753 1122355799999999999999999999999997 59999987542 24444
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCC-CCCC-C--ccc---cChhhhhhcccccCC-ChhhHHH
Q 011364 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKR---VSREFLRTKAHLRPR-TNTFGAV 147 (487)
Q Consensus 76 ~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~-~~p~-~--~~~---~~~~~~r~~r~l~~R-~~~~~~~ 147 (487)
+. |+.||+|.|+|++.++++ +++||++++++|||++.. ..|+ + .+. .+.+...++|||||| ++.++++
T Consensus 157 ~~--l~~gdiV~V~G~v~~t~~--GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~i 232 (659)
T PTZ00385 157 VS--LRVGDIIGADGVPCRMQR--GELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIET 232 (659)
T ss_pred hC--CCCCCEEEEEEEEEecCC--ceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHH
Confidence 45 999999999999999875 489999999999999642 2221 2 132 245555699999996 6789999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (487)
|++||+|+++||+||.++||+||+||+|+++.+++++++|. |+++ +++.++|
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~-t~~n---------------------------~~~~~~y 284 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFV-THHN---------------------------ANAMDLF 284 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceE-eecc---------------------------cCCCCEE
Confidence 99999999999999999999999999999999999999995 4433 4678899
Q ss_pred cccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcc---
Q 011364 228 LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE--- 303 (487)
Q Consensus 228 L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~--- 303 (487)
|++||||||| |+++|++||||||||||||++ +.||||||||||||++|+||+++|+++|+||++++..+.+...-
T Consensus 285 L~~SPELylKrLivgG~erVyeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~ 363 (659)
T PTZ00385 285 LRVAPELHLKQCIVGGMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIY 363 (659)
T ss_pred ecCChHHHHHHHhhcccCCEEEEeceecCCCC-CCCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEee
Confidence 9999999995 888999999999999999999 48999999999999999999999999999999999998764321
Q ss_pred ---------ccccccccccchhhhhhhhhhcCCCcc---c-CHHHH---HHHHHHhccccccccccccccchHHHhhhhh
Q 011364 304 ---------DMDFFNTWIEKGIIDRLSTVAERDFVQ---L-SYTDA---IELLIKAKKKFEFLVKWGCDLQSEHERYLTE 367 (487)
Q Consensus 304 ---------~l~~~~~~~~~~~~~~l~~~~~~~~~~---i-t~~ea---~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e 367 (487)
++++..+|.+.++.+.+.+++|.++.. + +.+++ ..++++.|++++....+|..++..++.++.+
T Consensus 364 ~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~ 443 (659)
T PTZ00385 364 PENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITD 443 (659)
T ss_pred ccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHH
Confidence 122223344444444444444443321 1 11111 1222333433332222344455556666555
Q ss_pred ccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHH-----HcCCCcccH---H
Q 011364 368 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDSY---W 439 (487)
Q Consensus 368 ~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~-----~~g~~~~~~---~ 439 (487)
.+ . +|+||+|||.+++||+++..+++++++|||||++|+ ||+||+++++|+.+|+++++ ..+.|++.+ +
T Consensus 444 ~l-~-qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~De 520 (659)
T PTZ00385 444 RV-V-EPTFVMDHPLFMSPLAKEQVSRPGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDE 520 (659)
T ss_pred hh-C-CcEEEeCCccccCcccccCCCCCCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHH
Confidence 44 4 899999999999999876667788999999999997 99999999999999999993 345566655 8
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 440 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 440 ~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|||+|++||||||||||||||||+|++||.+|||||++||....
T Consensus 521 dfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 521 TFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred HHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCccccc
Confidence 89999999999999999999999999999999999999998764
No 19
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-92 Score=720.05 Aligned_cols=441 Identities=21% Similarity=0.320 Sum_probs=382.1
Q ss_pred CCCCccccceeeccccCCCCC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHh-
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ- 74 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~----~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~- 74 (487)
|+++.|.+++++.++...+.. ........|+|+|||+++|.+||.+|++|.|++| +||++++++. ..|+.
T Consensus 31 ~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~ 108 (502)
T COG1190 31 PYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEAL 108 (502)
T ss_pred CCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHH
Confidence 678999999999999987753 1122233599999999999999999999999996 5999999875 33554
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChhh--hh-hcccccCCCh-hhHHHHHH
Q 011364 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF--LR-TKAHLRPRTN-TFGAVARV 150 (487)
Q Consensus 75 ~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~--~r-~~r~l~~R~~-~~~~~~~~ 150 (487)
.+. ++.||+|+|+|.+.+|+++ +++|.|+++++|+||+ .|+|+|.+++.. .| +.||+|+-.+ ..+.+|..
T Consensus 109 ~~~--~dlGDiigv~G~~~~T~~G--elSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~ 182 (502)
T COG1190 109 FKK--LDLGDIIGVEGPLFKTKTG--ELSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIK 182 (502)
T ss_pred Hhc--cccCCEEeeeeeeeecCCC--ceEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345 9999999999999999866 8999999999999998 688889887633 22 7899999876 79999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||+|+++||+||.++||+||+||+|++..+++++.|| +|+||. ++.++||++
T Consensus 183 Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF-~ThhNa---------------------------ld~dlyLRI 234 (502)
T COG1190 183 RSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPF-ITHHNA---------------------------LDMDLYLRI 234 (502)
T ss_pred HHHHHHHHHHHHHHCCCeEeccccccccCCCcccccc-eeeecc---------------------------cCCceEEee
Confidence 9999999999999999999999999999999999999 588774 467889999
Q ss_pred chhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccC-----ccc
Q 011364 231 SGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-----KED 304 (487)
Q Consensus 231 Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~-----~~~ 304 (487)
|||||| ||+++|++|||||+++||||++ +.||||||||||+|+||+||+|+|+++|+|++.+++.+.+.. ...
T Consensus 235 ApELyLKRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~ 313 (502)
T COG1190 235 APELYLKRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQE 313 (502)
T ss_pred ccHHHHHHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEe
Confidence 999998 8999999999999999999999 799999999999999999999999999999999999998743 356
Q ss_pred cccccccccchhhhhhhhhhcCC-CcccCHHHHHHHHHHhccccccccc--cccccchHHHhhhhhccccCccEEEEecC
Q 011364 305 MDFFNTWIEKGIIDRLSTVAERD-FVQLSYTDAIELLIKAKKKFEFLVK--WGCDLQSEHERYLTEEAFGGCPVIVSDYP 381 (487)
Q Consensus 305 l~~~~~~~~~~~~~~l~~~~~~~-~~~it~~ea~~~l~~~~~~~~~~~~--~~~~l~~~~e~~l~e~~~~~~p~fi~~~P 381 (487)
+++.++|.+..+.+.+++..+.. +...+.++|.+++++.+++...... +|.-++..+|....+. +. +|+||+|||
T Consensus 314 id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~-li-qPTFv~d~P 391 (502)
T COG1190 314 IDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAK-LI-QPTFVTDHP 391 (502)
T ss_pred EecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhh-hc-CCceeecCc
Confidence 78888899999999999998874 5667888999999988876543322 4455677777765444 44 799999999
Q ss_pred CcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH------cCCCccc-H-HHHHHHHhcCCCCcc
Q 011364 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS-Y-WWYLDLRHYGSVPHA 453 (487)
Q Consensus 382 ~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~------~g~~~~~-~-~~yl~~~~~G~pP~~ 453 (487)
.+++|++++++.+++.++|||||++|. |+|||+.+.+|+..|.++|.+ .|-+.+. + +.|++|++|||||+|
T Consensus 392 ~eiSPLak~~~~~p~~teRFElfi~g~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTg 470 (502)
T COG1190 392 VEISPLAKRHRSNPGLTERFELFIGGK-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTG 470 (502)
T ss_pred cccCccccCCCCCcchhhhheeeeccE-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCC
Confidence 999999988888889999999999996 999999999999999988864 3544332 3 569999999999999
Q ss_pred ceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 454 GFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 454 G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|+|||||||+|+|||..|||||++||....
T Consensus 471 G~GiGIDRLvMllT~~~sIRdVilFP~mr~ 500 (502)
T COG1190 471 GLGIGIDRLVMLLTNSPSIRDVILFPAMRP 500 (502)
T ss_pred CccccHHHHHHHHcCCCchhheecccccCC
Confidence 999999999999999999999999997643
No 20
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-89 Score=695.35 Aligned_cols=412 Identities=25% Similarity=0.410 Sum_probs=336.3
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCC-c-cchHhHhccCCCCCcEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-A-EGYDQVKSGLITTGASIW 87 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~-~-~~~~~~~~~~L~~gd~V~ 87 (487)
|+|+|.+|... ++|++|+++|||++.|++|+++||+|||.+|. +|||++++ . ..|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 68999999875 89999999999999999999999999999986 99999984 3 34777888 99999999
Q ss_pred EEeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCccc--cChhhhh-hcccccCCChhhHHHHHHHHHHHHH
Q 011364 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR--VSREFLR-TKAHLRPRTNTFGAVARVRNALAYA 157 (487)
Q Consensus 88 V~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~~--~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~ 157 (487)
|+|+|.+++. .++++||++++|+|||+|.+ +|++..+ ...+.+| +|||||||++.++.++++||+++.+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999999865 35799999999999999975 5655332 3344444 9999999999999999999999999
Q ss_pred HHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH
Q 011364 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE 237 (487)
Q Consensus 158 iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ 237 (487)
+|+||.++||+||+||+|+.+++|||++...+++.++ ++||. |.||||+|||
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARDfLVPSRv~~------------------------G~FYA----LPQSPQlfKQ 202 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARDFLVPSRVHP------------------------GKFYA----LPQSPQLFKQ 202 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccccccccccCC------------------------Cceee----cCCCHHHHHH
Confidence 9999999999999999999999999999876655543 46885 7799999998
Q ss_pred -HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchh
Q 011364 238 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 316 (487)
Q Consensus 238 -ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (487)
||++|++|||||++|||+|+.+.+|+ |||||||+||+|.+-+|+|+++|+|+..+++.+.+..
T Consensus 203 LLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~--------------- 266 (585)
T COG0173 203 LLMVAGFDRYYQIARCFRDEDLRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIE--------------- 266 (585)
T ss_pred HHHHhcccceeeeeeeecccccccccC-CcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCCc---------------
Confidence 68999999999999999999999999 9999999999999999999999999999999876421
Q ss_pred hhhhhhhhcCCCcccCHHHHHHHH--------------------------------------------------------
Q 011364 317 IDRLSTVAERDFVQLSYTDAIELL-------------------------------------------------------- 340 (487)
Q Consensus 317 ~~~l~~~~~~~~~~it~~ea~~~l-------------------------------------------------------- 340 (487)
+..||+|+||+||+..+
T Consensus 267 -------l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~ 339 (585)
T COG0173 267 -------LKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDE 339 (585)
T ss_pred -------cCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHH
Confidence 22355555555554432
Q ss_pred -----HHhcccccccccccc-ccchHHHhh-----------------------------------------------hhh
Q 011364 341 -----IKAKKKFEFLVKWGC-DLQSEHERY-----------------------------------------------LTE 367 (487)
Q Consensus 341 -----~~~~~~~~~~~~~~~-~l~~~~e~~-----------------------------------------------l~e 367 (487)
+..|.+--..+.|.+ .+...+.++ |++
T Consensus 340 ~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~ 419 (585)
T COG0173 340 LTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLID 419 (585)
T ss_pred HHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCC
Confidence 111000000000000 011111010 011
Q ss_pred ccccCccEEEEecCCc------------CccccccccCCC-------C--ceEEEEEEecCeeeeechhHhhchHHHHHH
Q 011364 368 EAFGGCPVIVSDYPKE------------IKAFYMRQNDDG-------R--TVAAMDMLVPRIGELIGGSQREERLEYLEG 426 (487)
Q Consensus 368 ~~~~~~p~fi~~~P~~------------~~pf~~~~~~~~-------~--~~~~fdl~~~G~~El~~G~~r~~~~~~~~~ 426 (487)
.- ...++||+|||.. ++||+|+...+. . .+..||+++||+ ||+|||.|+|+.+.|++
T Consensus 420 ~~-~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~ 497 (585)
T COG0173 420 KD-QFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEK 497 (585)
T ss_pred cc-cceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHH
Confidence 10 1269999999993 789999865432 1 356899999998 99999999999999999
Q ss_pred HHHHcCCCcc----cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 427 RLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 427 ~~~~~g~~~~----~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
.|+..|++++ .++.+|+|++||+|||||+|+|+|||+|+|+|.+||||||+||++.+..
T Consensus 498 vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a~ 560 (585)
T COG0173 498 VFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQAA 560 (585)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCcccc
Confidence 9999999987 4788999999999999999999999999999999999999999987653
No 21
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=1.5e-88 Score=722.07 Aligned_cols=427 Identities=23% Similarity=0.341 Sum_probs=332.8
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
++++|.++... ++|++|+|+|||+++|.+||++|++|||++| .+|||++.+...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSG--IVQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCc--cEEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 67889999764 7899999999999999999999999999997 499999876444666777 9999999999
Q ss_pred eeEeecC-------CCCceEEEEEeEEEEEccCCCCCCCCcc-ccChhhhh-hcccccCCChhhHHHHHHHHHHHHHHHH
Q 011364 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHK 160 (487)
Q Consensus 90 G~~~~~~-------~~~~~~el~~~~i~vls~~~~~~p~~~~-~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (487)
|+|.+++ ..++++||.+++++|||+|. .+|++.. ..+.+.+| ++||||+|++.++++|++||+|++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999764 34578999999999999996 4676543 23444555 8999999999999999999999999999
Q ss_pred hhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc-ccccchhhhHH-H
Q 011364 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLNAE-T 238 (487)
Q Consensus 161 ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~Spql~l~-l 238 (487)
||.++||+||+||+|+++++||+++ |.+. .. +++... +|+||||+||| +
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp-~~---------------------------~~~~~~y~L~qSpQlykq~l 201 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVP-SR---------------------------VHKGEFYALPQSPQLFKQLL 201 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeee-ee---------------------------cCCCceeecCCCHHHHHHHH
Confidence 9999999999999999999999876 4332 11 112223 49999999997 6
Q ss_pred HhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhh
Q 011364 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (487)
Q Consensus 239 l~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (487)
+++|++|||||+||||||++++.|| |||||||||++|+|++|+|+++|+||+++++.+.+. ++..+|.+.++.+
T Consensus 202 ~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~-----~~~~pf~r~ty~e 275 (583)
T TIGR00459 202 MVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGI-----DLKKPFPVMTYAE 275 (583)
T ss_pred HhcccCcEEEEcceeeCCCCCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCCCceEEEHHH
Confidence 8899999999999999999988877 999999999999999999999999999999988652 1112233333333
Q ss_pred hhhhhhcC----------------------------------------------CCcccCHHHHHHHHHHhccc------
Q 011364 319 RLSTVAER----------------------------------------------DFVQLSYTDAIELLIKAKKK------ 346 (487)
Q Consensus 319 ~l~~~~~~----------------------------------------------~~~~it~~ea~~~l~~~~~~------ 346 (487)
+++++ |. ++.+-..+++.++.++.|.+
T Consensus 276 a~~~y-GsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 354 (583)
T TIGR00459 276 AMERY-GSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLK 354 (583)
T ss_pred HHHHH-CCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEE
Confidence 32222 10 11112222333333333322
Q ss_pred cccccccc---cccch-------------------------------H------H-H-hhhhhccccCccEEEEecCCc-
Q 011364 347 FEFLVKWG---CDLQS-------------------------------E------H-E-RYLTEEAFGGCPVIVSDYPKE- 383 (487)
Q Consensus 347 ~~~~~~~~---~~l~~-------------------------------~------~-e-~~l~e~~~~~~p~fi~~~P~~- 383 (487)
+.....++ .-+.. . . + .-+++... -+|+||+|||..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~-~~~~wV~dfPlfe 433 (583)
T TIGR00459 355 VNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDL-FSFLWVVDFPMFE 433 (583)
T ss_pred EcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCC-ceEEEEEeCCCcc
Confidence 11100000 00000 0 0 0 01222211 279999999997
Q ss_pred ----------CccccccccCCCC---------ceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCccc----HHH
Q 011364 384 ----------IKAFYMRQNDDGR---------TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWW 440 (487)
Q Consensus 384 ----------~~pf~~~~~~~~~---------~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~----~~~ 440 (487)
++||+++..+|.. .+++|||++||+ ||+|||.|+|+++.|+++|+..|++++. +++
T Consensus 434 ~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ 512 (583)
T TIGR00459 434 KDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGF 512 (583)
T ss_pred ccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999998766544 678999999998 9999999999999999999999997663 689
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 441 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 441 yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
||+|++||+|||||+|||+|||+|+|||.+||||||+||++....
T Consensus 513 ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDVIaFPKt~~g~ 557 (583)
T TIGR00459 513 LLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTAAA 557 (583)
T ss_pred HHHHHhcCCCCcCceeccHHHHHHHHcCCCchhheeecCCCCCCc
Confidence 999999999999999999999999999999999999999998754
No 22
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-87 Score=762.61 Aligned_cols=427 Identities=19% Similarity=0.253 Sum_probs=350.1
Q ss_pred CCCCCccccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhH-hc
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KS 77 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~-~~ 77 (487)
-|+.++|.++++++++.+. ..|++|+|+|||+++|++||++|++|+|++| .||||++++.. .++.. +.
T Consensus 630 ~pyp~~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~ 701 (1094)
T PRK02983 630 DPYPVGVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA 701 (1094)
T ss_pred CCCCCCCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc
Confidence 4788999999999999864 6788999999999999999999999999996 59999987642 24433 34
Q ss_pred cCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHHHHH
Q 011364 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (487)
Q Consensus 78 ~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~Rs~ 153 (487)
|+.||+|.|+|++.+++++ ++||.+++++|+++|. .|+|++.++ .+...++||||+| ++.++++|++||+
T Consensus 702 --l~~gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~ 775 (1094)
T PRK02983 702 --VDLGDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSA 775 (1094)
T ss_pred --CCCCCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999998865 7999999999999997 566665543 3333389999997 5789999999999
Q ss_pred HHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchh
Q 011364 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (487)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spq 233 (487)
|++++|+||.++||+||+||+|+++.|++++++|. |++ ++|+.++||+||||
T Consensus 776 i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~-t~~---------------------------~~~~~~~yLriSPE 827 (1094)
T PRK02983 776 VVRAVRETLVARGFLEVETPILQQVHGGANARPFV-THI---------------------------NAYDMDLYLRIAPE 827 (1094)
T ss_pred HHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeE-eee---------------------------cCCCccchhhcChH
Confidence 99999999999999999999999999988889996 333 47789999999999
Q ss_pred hhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccc
Q 011364 234 LNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWI 312 (487)
Q Consensus 234 l~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~ 312 (487)
||| +|+++|++||||||||||||+++ .||||||||||+|++|.||+|+|+++|+||+++++.+.+... +.+.+.
T Consensus 828 LylKrLivgG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~--~~~~~~-- 902 (1094)
T PRK02983 828 LYLKRLCVGGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPV--VMRPDG-- 902 (1094)
T ss_pred HHHHHHHhcccCceEEEcceecCCCCC-CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcE--EeeCCc--
Confidence 998 57889999999999999999995 799999999999999999999999999999999999875432 111000
Q ss_pred cchhhhhhhhhhcCCCcccCHHHHHHHH------------------HHhcccccccccccc-ccchHHHhhhhhccccCc
Q 011364 313 EKGIIDRLSTVAERDFVQLSYTDAIELL------------------IKAKKKFEFLVKWGC-DLQSEHERYLTEEAFGGC 373 (487)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~it~~ea~~~l------------------~~~~~~~~~~~~~~~-~l~~~~e~~l~e~~~~~~ 373 (487)
. ....+-.+..||+++||.||++.. ++.+++.. ..|+. ++..+.+..++|+.+. +
T Consensus 903 --~-~~~~~i~~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~--~~~~~~~l~~~l~~~~ve~~~~-~ 976 (1094)
T PRK02983 903 --D-GVLEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYR--TDWDAGAVVLELYEHLVEDRTT-F 976 (1094)
T ss_pred --c-ccccccccCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCC--CCCCHhHHHHHHHHHHHHhhcC-C
Confidence 0 000001134578888888887632 22232221 12321 2334444455666665 8
Q ss_pred cEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-----cCCCcccH---HHHHHHH
Q 011364 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLR 445 (487)
Q Consensus 374 p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-----~g~~~~~~---~~yl~~~ 445 (487)
|+||+|||.+++|||++.++|+++++|||||++|+ ||+||+++++|+.+|++++++ .+.|++.+ +|||+|+
T Consensus 977 P~Fv~dyP~~~spla~~~~~~p~~~erFdL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al 1055 (1094)
T PRK02983 977 PTFYTDFPTSVSPLTRPHRSDPGLAERWDLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQAL 1055 (1094)
T ss_pred CEEEECCCcccccccccCCCCCCeeEEEEEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHH
Confidence 99999999999999988777888999999999997 999999999999999777654 45677765 6899999
Q ss_pred hcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 446 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 446 ~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
+||||||||||||||||+|++||. |||||++||+...
T Consensus 1056 ~yGmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1056 EYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred HcCCCCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 999999999999999999999996 9999999999764
No 23
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.9e-86 Score=702.77 Aligned_cols=436 Identities=22% Similarity=0.326 Sum_probs=325.1
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc--cchHhHhccCCCCCcEE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASI 86 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~--~~~~~~~~~~L~~gd~V 86 (487)
.++|+|.+|... ++|++|+|+|||+++|++|+++|++|||++|. +|||++.+. ..++.++. |+.||+|
T Consensus 58 ~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esvV 127 (652)
T PLN02903 58 SRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYVV 127 (652)
T ss_pred cCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCEE
Confidence 478999999874 88999999999999999999999999999975 999998653 23555677 9999999
Q ss_pred EEEeeEeecC-------CCCceEEEEEeEEEEEccCCCCCCCCcc-------ccChhhhhhcccccCCChhhHHHHHHHH
Q 011364 87 WIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRN 152 (487)
Q Consensus 87 ~V~G~~~~~~-------~~~~~~el~~~~i~vls~~~~~~p~~~~-------~~~~~~~r~~r~l~~R~~~~~~~~~~Rs 152 (487)
.|+|+|.+++ ..++++||.+++++|||+|...+|++.. ..+.+..+++||||+|++.++++|++||
T Consensus 128 ~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs 207 (652)
T PLN02903 128 AVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRH 207 (652)
T ss_pred EEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHH
Confidence 9999999763 1246899999999999999655665432 2456666799999999999999999999
Q ss_pred HHHHHHHHhhhc-CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
++++++|+||.+ +||+||+||+|+++++||+++.|.++... .+..+||+||
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~----------------------------~g~~y~L~qS 259 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQ----------------------------PGTFYALPQS 259 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecC----------------------------CCcccccCCC
Confidence 999999999997 99999999999999999998876542211 1334479999
Q ss_pred hhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccC---------
Q 011364 232 GQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC--------- 301 (487)
Q Consensus 232 pql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~--------- 301 (487)
||+||| +|++|++|||||+||||||+++++|| |||||||||++|+|++|+|+++|+||+++++.+.+..
T Consensus 260 PQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rit 338 (652)
T PLN02903 260 PQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLT 338 (652)
T ss_pred HHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE
Confidence 999997 67899999999999999999988888 9999999999999999999999999999998775421
Q ss_pred -----------ccccccccccccc-------hh---hhhhh-----hhh---c-CCCcccCHH---HHHHHHHHhc---c
Q 011364 302 -----------KEDMDFFNTWIEK-------GI---IDRLS-----TVA---E-RDFVQLSYT---DAIELLIKAK---K 345 (487)
Q Consensus 302 -----------~~~l~~~~~~~~~-------~~---~~~l~-----~~~---~-~~~~~it~~---ea~~~l~~~~---~ 345 (487)
+.|+.+--...+. ++ ...+. +.+ + ..+.+-... +.+....+.| .
T Consensus 339 y~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl 418 (652)
T PLN02903 339 YAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGL 418 (652)
T ss_pred HHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCce
Confidence 1111110000000 00 00000 000 0 000000000 0010011111 0
Q ss_pred ---ccccc--c------------------------cccccc----------chHH---Hhh------hhhccccCccEEE
Q 011364 346 ---KFEFL--V------------------------KWGCDL----------QSEH---ERY------LTEEAFGGCPVIV 377 (487)
Q Consensus 346 ---~~~~~--~------------------------~~~~~l----------~~~~---e~~------l~e~~~~~~p~fi 377 (487)
.+... . +.|+.+ .... -.. |.++- ...++||
T Consensus 419 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~-~~~flWV 497 (652)
T PLN02903 419 AFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPS-RHSILWV 497 (652)
T ss_pred EEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCC-CceEEEE
Confidence 00000 0 000000 0000 000 11110 1269999
Q ss_pred EecCCc------------CccccccccCCC-----CceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcc----
Q 011364 378 SDYPKE------------IKAFYMRQNDDG-----RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD---- 436 (487)
Q Consensus 378 ~~~P~~------------~~pf~~~~~~~~-----~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~---- 436 (487)
+|||.. ++||+++..+|- -.+..|||++||+ ||+|||+|+|+++.|++.++..|++++
T Consensus 498 ~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~ 576 (652)
T PLN02903 498 TDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLSPEEAES 576 (652)
T ss_pred EeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCCHHHHHH
Confidence 999994 789999865432 2456899999998 999999999999999999999999876
Q ss_pred cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 437 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 437 ~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
.++|||+|++||+|||||+|+|+|||+|+|+|.+||||||+||++....
T Consensus 577 ~F~~~l~a~~yG~PphgG~alGldRlvmll~~~~~IrdviaFPKt~~g~ 625 (652)
T PLN02903 577 KFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGAKSIRDVIAFPKTTTAQ 625 (652)
T ss_pred HHHHHHHHHhcCCCCCCceeecHHHHHHHHcCCCchHheEecCCCCCcc
Confidence 4799999999999999999999999999999999999999999997653
No 24
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-88 Score=672.34 Aligned_cols=442 Identities=19% Similarity=0.267 Sum_probs=374.0
Q ss_pred CCCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc----cchH
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYD 73 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~----~~~~ 73 (487)
-|++|||..++++.|+.+.|.. ++...+..|+|+|||+++|.+| |++|++|++++ .+||||++.+. .+|.
T Consensus 74 ~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g--~klQvm~~~~~~~~~~~F~ 151 (560)
T KOG1885|consen 74 NPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDG--VKLQVMANAKKITSEEDFE 151 (560)
T ss_pred CCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCC--eEEEEEEehhhcCCHHHHH
Confidence 4789999999999999988753 5556677899999999999997 89999999886 46999999764 3576
Q ss_pred hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChh---hhhhcccccCCCh-hhHHHHH
Q 011364 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE---FLRTKAHLRPRTN-TFGAVAR 149 (487)
Q Consensus 74 ~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~---~~r~~r~l~~R~~-~~~~~~~ 149 (487)
+..+ +|++||+|+|+|.+.+|+.+ +++|.+.++.+||+|+. |+|.+..++. ..=+.||+|+-.+ ..+..|+
T Consensus 152 ~~~~-~lkrGDiig~~G~pgrt~~g--ELSi~~~~~~lLspcLh--~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~ 226 (560)
T KOG1885|consen 152 QLHK-FLKRGDIIGVSGYPGRTKSG--ELSIIPNEIILLSPCLH--MLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFR 226 (560)
T ss_pred HHHh-hhhccCEEeeecCCCcCCCc--eEEEeecchheecchhc--cCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHH
Confidence 6432 39999999999999998876 89999999999999995 5554433332 2226899998865 7899999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (487)
+||+|++.||.||+++||+||+||+|...++++.+.|| ||+||. ++.++||+
T Consensus 227 ~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hnd---------------------------ldm~LylR 278 (560)
T KOG1885|consen 227 IRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHND---------------------------LDMDLYLR 278 (560)
T ss_pred HHHHHHHHHHHHhhhcCceEecchhhccccCccccCce-eecccc---------------------------cCcceeee
Confidence 99999999999999999999999999999999999999 687763 36788999
Q ss_pred cchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCc------
Q 011364 230 VSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------ 302 (487)
Q Consensus 230 ~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~------ 302 (487)
+|||||+ +|+++|++||||||+.||||++ +.+||||||.||+|+||+||+|+|+++|+|++.+++.+.++.+
T Consensus 279 iAPEL~lK~LvVGGldrVYEIGr~FRNEGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~ 357 (560)
T KOG1885|consen 279 IAPELYLKMLVVGGLDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPN 357 (560)
T ss_pred echHHHHHHHHhccHHHHHHHHHHhhhcCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCC
Confidence 9999998 7999999999999999999999 6899999999999999999999999999999999999987642
Q ss_pred ------cccccccccccchhhhhhhhhhcCCCc---ccCHHHHHHHHHHh----ccccccccccccccchHHHhhhhhcc
Q 011364 303 ------EDMDFFNTWIEKGIIDRLSTVAERDFV---QLSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEA 369 (487)
Q Consensus 303 ------~~l~~~~~~~~~~~~~~l~~~~~~~~~---~it~~ea~~~l~~~----~~~~~~~~~~~~~l~~~~e~~l~e~~ 369 (487)
-++++..+|.+.+|++.|++.++.+|+ .+...|+-++|... +++++.+-..+.-|+...+.+|...
T Consensus 358 ~~~~~~~eldf~~pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~- 436 (560)
T KOG1885|consen 358 GPEEPELELDFTRPFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPT- 436 (560)
T ss_pred CCCCCceeeeccCCeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccc-
Confidence 346777889899999999999999887 46667777777654 3333332222334566666666554
Q ss_pred ccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CCCcccH--HHH
Q 011364 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WWY 441 (487)
Q Consensus 370 ~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~~~~~~--~~y 441 (487)
+. +|+||.|+|..++|+++.+....+.++|||||+.|- ||||++.+++++-.|+++|.++ |.|.... +.|
T Consensus 437 cv-nPTFi~~hP~imSPLAK~hrs~~glteRFElFi~~k-EicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~F 514 (560)
T KOG1885|consen 437 CV-NPTFIIDHPQIMSPLAKYHRSKAGLTERFELFIAGK-EICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDF 514 (560)
T ss_pred cC-CCeeEcCCchhcCccccccccccchhhHHHHhhhhH-HHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHH
Confidence 44 799999999999999988777788999999999995 9999999999999988888653 4443322 679
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 442 l~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
+.|++||+||+||||+|||||+|+||+..|||||++||-..
T Consensus 515 c~ALEYGlPPtgGwGmGIDRL~MllTds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 515 CTALEYGLPPTGGWGMGIDRLVMLLTDSNNIREVLLFPAMK 555 (560)
T ss_pred HHHHHcCCCCCCccccchhhhhhhhcCCcchhheeeccccC
Confidence 99999999999999999999999999999999999999653
No 25
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-86 Score=646.15 Aligned_cols=426 Identities=26% Similarity=0.435 Sum_probs=370.7
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---c---hHhHhccCCCCC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLITTG 83 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~---~~~~~~~~L~~g 83 (487)
+.+.++||.. +..++.|.|+|||++.|..||++|+.||++.+ ++||++..+.. . .+.... |+.|
T Consensus 69 ~~~~v~dl~~------~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~--is~E 138 (533)
T KOG0556|consen 69 ELTDVSDLDE------SNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGS--ISKE 138 (533)
T ss_pred ceeehhhhhh------hcCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhh--cCcc
Confidence 3345666655 36789999999999999999999999999985 59999976543 1 122445 9999
Q ss_pred cEEEEEeeEeecCC-----CCceEEEEEeEEEEEccCCCCCCCCccccC--------------------hhhhhhccccc
Q 011364 84 ASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--------------------REFLRTKAHLR 138 (487)
Q Consensus 84 d~V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~~~~p~~~~~~~--------------------~~~~r~~r~l~ 138 (487)
|+|.|.|+|++.+. ..+.+||++..|.|||.+++.+|++.++.+ .++..+||.||
T Consensus 139 SiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlD 218 (533)
T KOG0556|consen 139 SIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLD 218 (533)
T ss_pred eEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeee
Confidence 99999999998753 357899999999999999988998754321 12334899999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 139 ~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
||++.++++||+.+.+..++|+||..+||+||+||.|.++++||++.+|.|
T Consensus 219 LRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v----------------------------- 269 (533)
T KOG0556|consen 219 LRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV----------------------------- 269 (533)
T ss_pred cccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE-----------------------------
Confidence 999999999999999999999999999999999999999999999999987
Q ss_pred ccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRY 296 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~ 296 (487)
+||+.++||+|||||||| +++++|+|||+||||||+|+++|.||+.||+-||.||+|. .|+|+|+.+.+++.++++.
T Consensus 270 -~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~ 348 (533)
T KOG0556|consen 270 -SYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKG 348 (533)
T ss_pred -EeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999997 5778899999999999999999999999999999999998 5999999999999999999
Q ss_pred hhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhh----hccccC
Q 011364 297 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGG 372 (487)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~----e~~~~~ 372 (487)
+.+.++.++...++.++.+-.. +-.|-.+++|.|++++|++.|++.+ .-+||+++-|+.|. +++..
T Consensus 349 l~ery~~Eie~Vr~qyp~e~fk-----f~~~~lrl~~~e~v~mLreaGvE~g----~~dDlsTe~Ek~LG~lV~eky~t- 418 (533)
T KOG0556|consen 349 LRERYAKEIETVRKQYPFEPFK-----FLEPPLRLTFKEGVAMLREAGVEMG----DEDDLSTESEKKLGQLVREKYDT- 418 (533)
T ss_pred HHHHHHHHHHHHhhcCCCcccc-----cCCCceEeehHHHHHHHHHcCcccC----CccccCChhHHHHHHHHHHHhCC-
Confidence 9999988887666544321111 1134568999999999999998643 23589999998773 44544
Q ss_pred ccEEEEecCCcCccccccccCC-CCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCC
Q 011364 373 CPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 451 (487)
Q Consensus 373 ~p~fi~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP 451 (487)
.+.++.+||.+.+|||.+.+++ +.++++||++++| .||.+|.||+|+++.+.++++.+|+|+..+..|+++++||+||
T Consensus 419 dfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PP 497 (533)
T KOG0556|consen 419 DFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPP 497 (533)
T ss_pred cEEEEccCccccccccccCCCCCCCcccchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC
Confidence 6888899999999999887764 4589999999999 5999999999999999999999999999999999999999999
Q ss_pred ccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 452 HAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 452 ~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||+|||+||++|++||+.|||-..+|||+|+|+.
T Consensus 498 HaGgGIGLERvvmlyl~L~nIR~~SlFPRDPkRL~ 532 (533)
T KOG0556|consen 498 HAGGGIGLERVVMLYLGLNNIRKTSLFPRDPKRLT 532 (533)
T ss_pred CCCCcccHHHHHHHHhcCCcchhhccCCCCccccC
Confidence 99999999999999999999999999999999974
No 26
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.9e-84 Score=692.97 Aligned_cols=433 Identities=25% Similarity=0.368 Sum_probs=327.9
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (487)
.+++++.++... ++|++|+|+|||+++|.+|+++|++|||++|. +|||++.....|+.++. |+.||+|.|
T Consensus 3 ~r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQV 72 (588)
T ss_pred ccceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEE
Confidence 378899999764 78999999999999999999999999999975 99999863334666777 999999999
Q ss_pred EeeEeecCCC-------CceEEEEEeEEEEEccCCCCCCCCcc--ccChhhhh-hcccccCCChhhHHHHHHHHHHHHHH
Q 011364 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKK--RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYAT 158 (487)
Q Consensus 89 ~G~~~~~~~~-------~~~~el~~~~i~vls~~~~~~p~~~~--~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (487)
+|+|.+++.+ ++++||.+++++|||+|. ++|++.. ....+.+| ++||||+|++.++++|++||++++++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~i 151 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAI 151 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHH
Confidence 9999987632 568999999999999998 6776532 22334455 89999999999999999999999999
Q ss_pred HHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-
Q 011364 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE- 237 (487)
Q Consensus 159 R~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~- 237 (487)
|+||.++||+||+||+|+++++||+++ |.+.. . .+.+..+||+||||+|||
T Consensus 152 R~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~-~--------------------------~~~~~~~~L~qSpql~kq~ 203 (588)
T PRK00476 152 RNFLDDNGFLEIETPILTKSTPEGARD-YLVPS-R--------------------------VHPGKFYALPQSPQLFKQL 203 (588)
T ss_pred HHHHHHCCCEEEECCeeecCCCCCCcc-ceecc-c--------------------------ccCCceeecCCCHHHHHHH
Confidence 999999999999999999999999877 65421 1 122444579999999997
Q ss_pred HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccC----------------
Q 011364 238 TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC---------------- 301 (487)
Q Consensus 238 ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~---------------- 301 (487)
|+++|++|||||+||||||+++++||+ ||||||||++|+|++|+|+++|+||+++++.+.+..
T Consensus 204 l~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~ 282 (588)
T PRK00476 204 LMVAGFDRYYQIARCFRDEDLRADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRR 282 (588)
T ss_pred HHhcccCceEEEeceeecCCCCCCcCc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHH
Confidence 678999999999999999999888886 999999999999999999999999999999876421
Q ss_pred ----ccccccccccccchhhhhhh--------hhh-------cCCCc-------ccCHHHHHHHHHHhccc------ccc
Q 011364 302 ----KEDMDFFNTWIEKGIIDRLS--------TVA-------ERDFV-------QLSYTDAIELLIKAKKK------FEF 349 (487)
Q Consensus 302 ----~~~l~~~~~~~~~~~~~~l~--------~~~-------~~~~~-------~it~~ea~~~l~~~~~~------~~~ 349 (487)
+.|+.+--... ++.+.+. ..+ +..++ +-..++..++.+..+.+ ...
T Consensus 283 yg~dkPDlR~~~eI~--DVT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~ 360 (588)
T PRK00476 283 YGSDKPDLRFGLELV--DVTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNE 360 (588)
T ss_pred HCCCCCcccCCceeh--hHHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcC
Confidence 01111100000 0000000 000 00011 11122333333322210 000
Q ss_pred -c----------------------ccccccc---chH---HH-------hh------hhhccccCccEEEEecCCc----
Q 011364 350 -L----------------------VKWGCDL---QSE---HE-------RY------LTEEAFGGCPVIVSDYPKE---- 383 (487)
Q Consensus 350 -~----------------------~~~~~~l---~~~---~e-------~~------l~e~~~~~~p~fi~~~P~~---- 383 (487)
. .+-|+.+ ... .. .. +.+. ...+++||+|||..
T Consensus 361 ~~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~-~~~~f~Wv~dfPlf~~~~ 439 (588)
T PRK00476 361 DGLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDE-DKFAFLWVVDFPMFEYDE 439 (588)
T ss_pred CCCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCC-CCceEEEEEeCCCCCccC
Confidence 0 0001000 000 00 00 1111 11269999999994
Q ss_pred --------CccccccccCC--------C--CceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcc----cHHHH
Q 011364 384 --------IKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWY 441 (487)
Q Consensus 384 --------~~pf~~~~~~~--------~--~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~----~~~~y 441 (487)
++||+++..+| + -.+.+|||++||+ ||+|||+|+|+++.|++.++..|++++ .++||
T Consensus 440 ~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~ 518 (588)
T PRK00476 440 EEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFL 518 (588)
T ss_pred CCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78999986543 2 2468999999998 999999999999999999999999886 57999
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 442 l~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
|+|++||+|||||||+|+|||+|+|||.+||||||+||++....
T Consensus 519 ~~a~~~g~pph~g~~~G~dr~~~~~~~~~~irdvi~fp~~~~g~ 562 (588)
T PRK00476 519 LDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQSAQ 562 (588)
T ss_pred HHHHhcCCCCCcceeccHHHHHHHHcCCccHHheeeccCCCCcc
Confidence 99999999999999999999999999999999999999997653
No 27
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=4.3e-82 Score=680.70 Aligned_cols=434 Identities=21% Similarity=0.308 Sum_probs=318.4
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~ 85 (487)
.|+|+|.+|... +.|+.|+|+|||+++|++|+++|++|||++|. +|||++++. ..|+.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999875 78999999999999999999999999999975 999998653 23556677 999999
Q ss_pred EEEEeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCC--ccc-----------cChhhhh-hcccccCCChhh
Q 011364 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR-----------VSREFLR-TKAHLRPRTNTF 144 (487)
Q Consensus 86 V~V~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~--~~~-----------~~~~~~r-~~r~l~~R~~~~ 144 (487)
|.|+|+|.+++. .++++||.+++++||++|. .+|++ ++. ...+.+| ++||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999998531 2368999999999999996 34554 331 1234455 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
+++|++||++++++|+||.++||+||+||+|+++++||+++.+.... ++..
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~-----------------------------~~~~ 203 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSR-----------------------------IHPK 203 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeee-----------------------------cCCC
Confidence 99999999999999999999999999999999999999888653321 1222
Q ss_pred cc-ccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhc---
Q 011364 225 PA-FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD--- 299 (487)
Q Consensus 225 ~~-~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~--- 299 (487)
.. +|+||||+||| |+++|++|||||+||||||++++.|| |||||||||++|+|++|+|+++|+||+++++....
T Consensus 204 ~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~~~~~~~~ 282 (706)
T PRK12820 204 EFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFAIGGIALP 282 (706)
T ss_pred cceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 23 49999999997 57899999999999999999987776 99999999999999999999999999999862210
Q ss_pred cC----------------ccccccccccccc-hhh-----hhhhhhh-------cCCCc----ccCH---HHHH--HHHH
Q 011364 300 NC----------------KEDMDFFNTWIEK-GII-----DRLSTVA-------ERDFV----QLSY---TDAI--ELLI 341 (487)
Q Consensus 300 ~~----------------~~~l~~~~~~~~~-~~~-----~~l~~~~-------~~~~~----~it~---~ea~--~~l~ 341 (487)
.+ +.|+.+--...+. ++. ..++..+ ...++ .++- ++++ +..+
T Consensus 283 ~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~ 362 (706)
T PRK12820 283 RPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAP 362 (706)
T ss_pred CCceEEEHHHHHHHhCCCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 00 1111110000000 000 0000000 00001 0111 1101 1111
Q ss_pred Hhccc------ccc-c----------------------ccccccc------c-h----HH-H--hh------hhhccccC
Q 011364 342 KAKKK------FEF-L----------------------VKWGCDL------Q-S----EH-E--RY------LTEEAFGG 372 (487)
Q Consensus 342 ~~~~~------~~~-~----------------------~~~~~~l------~-~----~~-e--~~------l~e~~~~~ 372 (487)
..|.+ ... . .+.|+.+ . . .. . .. |.+.- ..
T Consensus 363 ~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~-~~ 441 (706)
T PRK12820 363 SFGAKGMTWMRAEAGGLDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEG-VF 441 (706)
T ss_pred HcCCCceEEEEECCCCcCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCC-Cc
Confidence 11100 000 0 0001000 0 0 00 0 00 11110 12
Q ss_pred ccEEEEecCC-----------cCccccccccCC--------C--CceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc
Q 011364 373 CPVIVSDYPK-----------EIKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431 (487)
Q Consensus 373 ~p~fi~~~P~-----------~~~pf~~~~~~~--------~--~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~ 431 (487)
.++||+|||. .++||+++..+| + -.+..|||++||+ ||+|||+|+|+++.|++.|+..
T Consensus 442 ~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~f~~l 520 (706)
T PRK12820 442 HPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRIFAAL 520 (706)
T ss_pred eEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHHHHHc
Confidence 6899999999 479999985432 1 1357899999997 9999999999999999999999
Q ss_pred CCCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 432 KLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 432 g~~~~~----~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
|++++. +++||+|++||+|||||+|+|+|||+|+|||.+||||||+||++....
T Consensus 521 g~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~dRlvm~l~~~~sirdviaFPK~~~g~ 578 (706)
T PRK12820 521 GLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSMILQTPSIREVIAFPKNRSAA 578 (706)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCceeccHHHHHHHHcCCccHHHhcccCCCCCCC
Confidence 998764 679999999999999999999999999999999999999999987653
No 28
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-83 Score=623.99 Aligned_cols=416 Identities=31% Similarity=0.548 Sum_probs=374.8
Q ss_pred CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEEEEeeEeecCCC---C
Q 011364 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGS---K 99 (487)
Q Consensus 24 ~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G~~~~~~~~---~ 99 (487)
+.++.|+.|+|.||||+.|.+++++||+||||+|+ ||||++.+. ..|+.+ . |.+++.|.|.|++++.+.+ .
T Consensus 118 s~~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~ap 192 (545)
T KOG0555|consen 118 STENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAP 192 (545)
T ss_pred cccccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCC
Confidence 34678999999999999999999999999999986 999999764 234444 3 9999999999999998654 4
Q ss_pred ceEEEEEeEEEEEccCCCC---CCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeee
Q 011364 100 QKVELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176 (487)
Q Consensus 100 ~~~el~~~~i~vls~~~~~---~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~ 176 (487)
++.||.|..++|++.|... .|+. ...+++.+.++|||-+|....+.++++|+.+++++|++|.+.||.||.+|.|+
T Consensus 193 gghEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmV 271 (545)
T KOG0555|consen 193 GGHELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMV 271 (545)
T ss_pred CCceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceE
Confidence 7899999999999998764 3443 35677888899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccC
Q 011364 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256 (487)
Q Consensus 177 ~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E 256 (487)
....||++.+|.. +|||.++||+||+|||++....++++||+|.++||+|
T Consensus 272 QTQVEGGsTLFkl------------------------------dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAE 321 (545)
T KOG0555|consen 272 QTQVEGGSTLFKL------------------------------DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAE 321 (545)
T ss_pred EEEecCcceEEee------------------------------cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhh
Confidence 9999999999975 7999999999999999999999999999999999999
Q ss_pred CCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcc-ccccccccccchhhhhhhhhhcCCCcccCHHH
Q 011364 257 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 335 (487)
Q Consensus 257 ~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~e 335 (487)
.++|+|||+|||++|+|++|.+++++|+.+|+|+...+.++++.+.. .+..+++.+ +....||.|+.|.|
T Consensus 322 kSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y~d 392 (545)
T KOG0555|consen 322 KSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNYSD 392 (545)
T ss_pred hhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCHHH
Confidence 99999999999999999999999999999999999999999876533 222222211 13567999999999
Q ss_pred HHHHHHHhcccccc--ccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEecCeeeee
Q 011364 336 AIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELI 412 (487)
Q Consensus 336 a~~~l~~~~~~~~~--~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~El~ 412 (487)
||+.|++++++-+. ..++|+|+....|+.+.+.++ .|+|+++||.++++|||+... |++.+++.|++.||||||+
T Consensus 393 AI~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIv 470 (545)
T KOG0555|consen 393 AIEWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIV 470 (545)
T ss_pred HHHHHHhcCCcCccCcccccccchhhHHHHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccccc
Confidence 99999999875432 357899999999999998764 699999999999999998875 4568999999999999999
Q ss_pred chhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 413 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 413 ~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||+|+.+.+++.+.+++.|+|+.+|.||+|.++||..||||+|||+||++||||+..+||||++|||..+||.
T Consensus 471 GGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 471 GGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred cceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 29
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2.5e-80 Score=625.42 Aligned_cols=319 Identities=45% Similarity=0.795 Sum_probs=285.6
Q ss_pred cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCC
Q 011364 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (487)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~ 205 (487)
++.++++++||||+|++..++++++||.|++++|+||.++||+||+||+|+++++++++++|.+
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---------------- 65 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---------------- 65 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc----------------
Confidence 4677888999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHH
Q 011364 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMA 284 (487)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~ 284 (487)
+||++++||++|||+|||+++.|++|||+|+||||||++++.||||||||||||++|+ |++|+|+
T Consensus 66 --------------~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~ 131 (322)
T cd00776 66 --------------SYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMD 131 (322)
T ss_pred --------------ccCCCcceecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHH
Confidence 5889999999999999986655599999999999999998899999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhh
Q 011364 285 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY 364 (487)
Q Consensus 285 ~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~ 364 (487)
++|++|+++++.+.+.+..++..... .......+..||+++||.||++++++.+.. ....||.+++.++|++
T Consensus 132 ~~e~ll~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~~e~~ 203 (322)
T cd00776 132 LIEELIKYIFKRVLERCAKELELVNQ------LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTEHERL 203 (322)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhc------cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHHHHHH
Confidence 99999999999999887766544210 011111235689999999999999987653 1256899999999999
Q ss_pred hhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHH
Q 011364 365 LTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 443 (487)
Q Consensus 365 l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~ 443 (487)
|++.+.+ +|+||+|||.+++|||++.++ ++++++|||||++|++||+||++|++|+++|+++++++|+++..++|||+
T Consensus 204 l~~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~ 282 (322)
T cd00776 204 LGEIVKG-DPVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLD 282 (322)
T ss_pred HHHHhCC-CcEEEECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 9876533 799999999999999987665 44799999999999669999999999999999999999999999999999
Q ss_pred HHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 444 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 444 ~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|+++|+|||||||||||||+|++||.+|||||++|||+|+
T Consensus 283 a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 322 (322)
T cd00776 283 LRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322 (322)
T ss_pred HHHCCCCCCceeeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999999999999999999985
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=2.9e-78 Score=612.64 Aligned_cols=318 Identities=29% Similarity=0.496 Sum_probs=279.5
Q ss_pred ChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCC----CceeeecCCCcccccCC
Q 011364 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE----QFCVTTLIPSSREAAES 202 (487)
Q Consensus 127 ~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~----~F~vt~~~~~~~~~~~~ 202 (487)
+.+...++|++++|++.++++|++||+|++++|+||.++||+||+||+|+++++++.+. +|.+.
T Consensus 9 ~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~------------ 76 (335)
T PRK06462 9 EYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQI------------ 76 (335)
T ss_pred chhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCcccc------------
Confidence 55666689999999999999999999999999999999999999999999987764332 23221
Q ss_pred CCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCC--CcccccccceeeEEccCCHH
Q 011364 203 PVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLK 280 (487)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~ 280 (487)
..+||++++||++|||+|||++++|++||||||||||||++++ .||||||||||||++|+|++
T Consensus 77 ---------------~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~ 141 (335)
T PRK06462 77 ---------------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLD 141 (335)
T ss_pred ---------------ccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHH
Confidence 1358899999999999999999999999999999999999966 69999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchH
Q 011364 281 DDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360 (487)
Q Consensus 281 ~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~ 360 (487)
|+|+++|+||+++++.+.++++.++...+... ..+..||+++||.||+++|++.+.+ ..++.+++..
T Consensus 142 dlm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~---------~~~~~p~~rit~~eA~~~l~~~~~~----~~~~~~l~~~ 208 (335)
T PRK06462 142 EVMDLIEDLIKYLVKELLEEHEDELEFFGRDL---------PHLKRPFKRITHKEAVEILNEEGCR----GIDLEELGSE 208 (335)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhcCCcc---------ccCCCCCeEEEHHHHHHHHHhcCCC----cchHHHHhHH
Confidence 99999999999999999988876665543210 0134689999999999999887654 2346688889
Q ss_pred HHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEec-CeeeeechhHhhchHHHHHHHHHHcCCCcccH
Q 011364 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSY 438 (487)
Q Consensus 361 ~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~-G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~ 438 (487)
.|++|.+.+ . +||||+|||.+++|||++.++ ++.+++|||||++ |+|||+||++|+++++++.++++++|++++.+
T Consensus 209 ~E~~l~~~~-~-~p~fi~~yP~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~ 286 (335)
T PRK06462 209 GEKSLSEHF-E-EPFWIIDIPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKY 286 (335)
T ss_pred HHHHHHHHh-C-CCEEEECCChhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHH
Confidence 999987654 4 799999999999999987654 5578899999997 77999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 439 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 439 ~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
+|||+|+++|+|||||||||+|||+|++||.+|||||++|||++|+..
T Consensus 287 ~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv~~FPr~~g~~~ 334 (335)
T PRK06462 287 KWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPGIVA 334 (335)
T ss_pred HHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchheeeeccCCCCCCC
Confidence 999999999999999999999999999999999999999999999853
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=9.7e-78 Score=612.49 Aligned_cols=315 Identities=40% Similarity=0.689 Sum_probs=261.6
Q ss_pred hhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCC
Q 011364 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207 (487)
Q Consensus 128 ~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~ 207 (487)
.++++++||||+|++..+++|++||.|++++|+||.++||+||+||+|++++++|++++|.+.. ..
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~-~~------------- 67 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDS-EP------------- 67 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEE-ST-------------
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCcccccccccc-ch-------------
Confidence 4678899999999999999999999999999999999999999999999999999999998743 11
Q ss_pred CCCCCCCccccccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHH
Q 011364 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
.+||++++||++|||+||| ++++|++|||||+||||||+++|.||+|||||||||++|+|++++|+++
T Consensus 68 -----------~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~ 136 (335)
T PF00152_consen 68 -----------GKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLI 136 (335)
T ss_dssp -----------TEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHH
T ss_pred -----------hhhcccceecCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHH
Confidence 3689999999999999996 6677799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhcccccc-------------cccc
Q 011364 287 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF-------------LVKW 353 (487)
Q Consensus 287 e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~-------------~~~~ 353 (487)
|+||+++++.+.++.... . +.-.+..+|++++|.||++.+...+..... ...+
T Consensus 137 e~li~~i~~~~~~~~~~~-~-------------~~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (335)
T PF00152_consen 137 EELIKYIFKELLENAKEL-S-------------LNIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEV 202 (335)
T ss_dssp HHHHHHHHHHHHHHHHHH-H-------------TCEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHC
T ss_pred HHHHHHHHHHHhccCccc-c-------------ccccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchH
Confidence 999999999987441100 0 011233569999999999998875422211 0123
Q ss_pred ccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCC-CceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcC
Q 011364 354 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432 (487)
Q Consensus 354 ~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~-~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g 432 (487)
|.++...+|+.|++.... .|+||+|||..++|||++.++++ .+++|||||++| +||+|||+|++++++|++++++.+
T Consensus 203 ~~~l~~~~e~~L~~~~~~-~p~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~ 280 (335)
T PF00152_consen 203 GRLLSEEVEPYLVEKYFT-DPVFITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQG 280 (335)
T ss_dssp HHHHHHHHHHHHHHHHSS-SEEEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcccC-CcEEEEecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcc
Confidence 556777888877754544 89999999999999999888776 799999999999 599999999999999999999999
Q ss_pred CCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 433 LNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 433 ~~~~~----~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
++++. ++|||+|+++|+|||||||||+|||+|++||.+|||||++|||+.+
T Consensus 281 ~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 281 IDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp HHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred cccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 88777 8999999999999999999999999999999999999999999863
No 32
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-73 Score=564.91 Aligned_cols=412 Identities=22% Similarity=0.329 Sum_probs=318.2
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHh--HhccCCCCCcEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASIW 87 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~--~~~~~L~~gd~V~ 87 (487)
++..|.++.-. .+|++|.+|||+...|.+|.++|..|||.+|. +|+.++.+.....+ ... ++.+|+|.
T Consensus 34 ~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv~ 103 (628)
T KOG2411|consen 34 RTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVVQ 103 (628)
T ss_pred hhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheEe
Confidence 66778888765 89999999999999999999999999999975 88888876432222 234 89999999
Q ss_pred EEeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCccc-------cChhhhhhcccccCCChhhHHHHHHHHH
Q 011364 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRNA 153 (487)
Q Consensus 88 V~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~~-------~~~~~~r~~r~l~~R~~~~~~~~~~Rs~ 153 (487)
|.|+++.++. ..+.+|+.++++++++++...+|+...+ .+..+..++||||||.+.++..+|+||.
T Consensus 104 v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~ 183 (628)
T KOG2411|consen 104 VEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSN 183 (628)
T ss_pred eeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHH
Confidence 9999987632 3578999999999999998878875322 2333344899999999999999999999
Q ss_pred HHHHHHHhhhc-CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccch
Q 011364 154 LAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSG 232 (487)
Q Consensus 154 i~~~iR~ff~~-~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Sp 232 (487)
+...+|+||.+ .||+||+||+|...+++|+.++...|+.+. +.|| .|.|||
T Consensus 184 ~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~EFvVPtr~~~------------------------g~FY----aLpQSP 235 (628)
T KOG2411|consen 184 VVKKIRRYLNNRHGFVEVETPTLFKRTPGGAREFVVPTRTPR------------------------GKFY----ALPQSP 235 (628)
T ss_pred HHHHHHHHHhhhcCeeeccCcchhccCCCccceeecccCCCC------------------------Ccee----ecCCCH
Confidence 99999999976 569999999999999999988553332221 3576 488999
Q ss_pred hhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccccccccc
Q 011364 233 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 311 (487)
Q Consensus 233 ql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~ 311 (487)
|.||| ||++|++|||||++|||+|+++.+|+ |||||+|+||+|.+.+++|+++|++|++++....+..
T Consensus 236 QQfKQlLMvsGidrYyQiARCfRDEdlR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~~---------- 304 (628)
T KOG2411|consen 236 QQFKQLLMVSGIDRYYQIARCFRDEDLRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGIQ---------- 304 (628)
T ss_pred HHHHHHHHHhchhhHHhHHhhhcccccCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCCC----------
Confidence 99998 68999999999999999999998998 9999999999999999999999999999998876521
Q ss_pred ccchhhhhhhhhhcCCCcccCHHHHHHH----------------------------------------------------
Q 011364 312 IEKGIIDRLSTVAERDFVQLSYTDAIEL---------------------------------------------------- 339 (487)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~it~~ea~~~---------------------------------------------------- 339 (487)
+..||++|||+||++.
T Consensus 305 ------------l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~ 372 (628)
T KOG2411|consen 305 ------------LPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNY 372 (628)
T ss_pred ------------CCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhh
Confidence 1123333333333322
Q ss_pred ---------------------------------------------HHHhccccccc--cccccc-------------cch
Q 011364 340 ---------------------------------------------LIKAKKKFEFL--VKWGCD-------------LQS 359 (487)
Q Consensus 340 ---------------------------------------------l~~~~~~~~~~--~~~~~~-------------l~~ 359 (487)
.+..+..-++- ..||.- +..
T Consensus 373 ~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~ 452 (628)
T KOG2411|consen 373 KKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQD 452 (628)
T ss_pred HHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHH
Confidence 11111100000 011110 001
Q ss_pred HHHhhhhhccccCccEEEEecCCc-------------CccccccccCC-------CC--ceEEEEEEecCeeeeechhHh
Q 011364 360 EHERYLTEEAFGGCPVIVSDYPKE-------------IKAFYMRQNDD-------GR--TVAAMDMLVPRIGELIGGSQR 417 (487)
Q Consensus 360 ~~e~~l~e~~~~~~p~fi~~~P~~-------------~~pf~~~~~~~-------~~--~~~~fdl~~~G~~El~~G~~r 417 (487)
.+.+-+..+. ....+||+|||.. ++||++++.+| +. ....|||++||+ ||+|||.|
T Consensus 453 l~~~~l~d~~-~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGGGSiR 530 (628)
T KOG2411|consen 453 LLVKNLRDKS-KFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGGGSIR 530 (628)
T ss_pred HHhccccccc-cceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccE-eecCceeE
Confidence 1111111111 1268999999995 68999887653 11 346799999998 99999999
Q ss_pred hchHHHHHHHHHHc-CCCcccH--HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 418 EERLEYLEGRLDEL-KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 418 ~~~~~~~~~~~~~~-g~~~~~~--~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
+|+.+.|+-.++.. +++.+.+ ++.|+|+.+|+|||||||+|+|||+|+|||+.||||||+||+....
T Consensus 531 Ihn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~G 600 (628)
T KOG2411|consen 531 IHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTTG 600 (628)
T ss_pred ecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCCc
Confidence 99999999999854 5554444 4788999999999999999999999999999999999999998654
No 33
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.7e-70 Score=555.09 Aligned_cols=297 Identities=21% Similarity=0.296 Sum_probs=245.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 142 ~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
+.++++|++||.+++++|+||.++||+||+||+|+++++++++++|.+ . .+|
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~-~---------------------------~~~ 53 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFIT-H---------------------------HNA 53 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEe-c---------------------------cCC
Confidence 568899999999999999999999999999999999888777888864 1 147
Q ss_pred cCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhcc
Q 011364 222 FEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300 (487)
Q Consensus 222 ~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~ 300 (487)
|+.++||++|||+||| ++++|++|||+|+||||||++ ++||||||||||||++|++++|+|+++|++|+++++.+.+.
T Consensus 54 ~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~ 132 (329)
T cd00775 54 LDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGK 132 (329)
T ss_pred CCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 7999999999999995 678899999999999999999 68999999999999999999999999999999999998765
Q ss_pred CccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhcc---------------------ccccccccccccch
Q 011364 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK---------------------KFEFLVKWGCDLQS 359 (487)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~---------------------~~~~~~~~~~~l~~ 359 (487)
+ ++.+.+.. .....||+++||.||++.+..... +++....|+..+..
T Consensus 133 ~--~~~~~~~~----------~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (329)
T cd00775 133 T--KIEYGGKE----------LDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDK 200 (329)
T ss_pred c--eeecCCcc----------ccCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 3 23222110 012358999999999986632110 01001123334444
Q ss_pred HHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CC
Q 011364 360 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KL 433 (487)
Q Consensus 360 ~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~ 433 (487)
.+++++.+.+ + +|+||+|||+.++|||++.++++++++|||||++|+ ||+||++|+++++++++++++. +.
T Consensus 201 l~~~~ve~~~-~-~p~fi~~yP~~~~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~ 277 (329)
T cd00775 201 LFEEFVEPTL-I-QPTFIIDHPVEISPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQKEAGD 277 (329)
T ss_pred HHHHHhcccc-C-CCEEEECCChHhCcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHHHcCC
Confidence 5556555444 4 799999999999999986666778999999999998 9999999999999999888653 55
Q ss_pred Cccc--HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 434 NRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 434 ~~~~--~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
++.. .+|||+|+++|+|||||||||+|||+|++||.+|||||++||++.
T Consensus 278 ~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 278 DEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred CccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 5543 489999999999999999999999999999999999999999975
No 34
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=2.4e-69 Score=541.04 Aligned_cols=290 Identities=22% Similarity=0.277 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeecc-CCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~-~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (487)
|++||.+++++|+||.++||+||+||+|+++ .+++++++|.+...+ .+++++++
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~-------------------------~~~~~~~~ 55 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLG-------------------------PDGEGRPL 55 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccC-------------------------CCCCCcce
Confidence 5789999999999999999999999999998 467888999753211 12457899
Q ss_pred ccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccc
Q 011364 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305 (487)
Q Consensus 227 ~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l 305 (487)
||++||||||| ++++|++||||||||||||++ +.||||||||||||++|.|++|+|+++|+||+++++.+.
T Consensus 56 yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~~------- 127 (304)
T TIGR00462 56 YLQTSPEYAMKRLLAAGSGPIFQICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDPF------- 127 (304)
T ss_pred eeecCHHHHHHHHHhccCCCEEEEcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-------
Confidence 99999999995 889999999999999999999 689999999999999999999999999999999987621
Q ss_pred ccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhh---hccc-cCccEEEEecC
Q 011364 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---EEAF-GGCPVIVSDYP 381 (487)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~---e~~~-~~~p~fi~~~P 381 (487)
.+|.+.++.+.+++.++.++.+.+.+++.+++++.|..+ .++.++.+.+|+++. ++.+ .++|+||+|||
T Consensus 128 ---~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP 200 (304)
T TIGR00462 128 ---APWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRA----SEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYP 200 (304)
T ss_pred ---CCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCC----CCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCc
Confidence 234445666777777777777788888888888877543 456688888888774 3333 23799999999
Q ss_pred CcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCCCCcc
Q 011364 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHA 453 (487)
Q Consensus 382 ~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-------~g~~~~~~-~~yl~~~~~G~pP~~ 453 (487)
..++|||++.++++++++|||||++|+ ||+||++|+++++++++++++ .|+++..+ +|||+|+++|+||||
T Consensus 201 ~~~~~~~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~ 279 (304)
T TIGR00462 201 ASQAALARISPDDPRVAERFELYIKGL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECS 279 (304)
T ss_pred cccCcCccccCCCCCeeEEEEEEECCE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCC
Confidence 999999876555667899999999997 999999999999998888765 78888888 689999999999999
Q ss_pred ceeccHHHHHHHHcCCCCccccccc
Q 011364 454 GFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 454 G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
|||||+|||+|++||.+|||||++|
T Consensus 280 G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 280 GVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred ceEEcHHHHHHHHhCCCchhhcccC
Confidence 9999999999999999999999998
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=2.2e-68 Score=524.50 Aligned_cols=260 Identities=27% Similarity=0.480 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc--Ccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--EKP 225 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 225 (487)
|++||.+++.+|+||.++||+||+||+|+++++++++++|.+ +|+ |++
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~------------------------------~~~~~g~~ 50 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLV------------------------------KYNALGLD 50 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEe------------------------------eecCCCCc
Confidence 578999999999999999999999999999989888899976 233 789
Q ss_pred cccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccc
Q 011364 226 AFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED 304 (487)
Q Consensus 226 ~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~ 304 (487)
+||++|||+|+| ++++|++|||+|+||||+|+. +.+|++||||||||++|.|++|+|+++|++|+++++.+.+.+..+
T Consensus 51 ~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~~-~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~ 129 (269)
T cd00669 51 YYLRISPQLFKKRLMVGGLDRVFEINRNFRNEDL-RARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVT 129 (269)
T ss_pred EEeecCHHHHHHHHHhcCCCcEEEEecceeCCCC-CCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999996 567889999999999999955 899999999999999999999999999999999999998766544
Q ss_pred cccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcC
Q 011364 305 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384 (487)
Q Consensus 305 l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~ 384 (487)
+... + ..+..||++|||.||++.+. +|+||+|||...
T Consensus 130 ~~~~-----------~-~~~~~~~~rit~~ea~~~~~-------------------------------~p~fi~d~P~~~ 166 (269)
T cd00669 130 YGFE-----------L-EDFGLPFPRLTYREALERYG-------------------------------QPLFLTDYPAEM 166 (269)
T ss_pred cccc-----------c-cccCCCceEeeHHHHHHHhC-------------------------------CceEEECCCccc
Confidence 3211 0 12456899999999987531 599999999999
Q ss_pred ccccccccC-CCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCccceeccH
Q 011364 385 KAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGF 459 (487)
Q Consensus 385 ~pf~~~~~~-~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~----~~~~yl~~~~~G~pP~~G~giGi 459 (487)
+|||++.++ ++++++|||||++|+ ||+||++|+|++++|.+++++.+++++ .++|||+|+++|+|||||||||+
T Consensus 167 ~~fy~~~~~~~~~~~~~fdl~~~g~-Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGi 245 (269)
T cd00669 167 HSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGI 245 (269)
T ss_pred CCCCCCcCCCCCCeEEEEEEeeCCE-EEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHH
Confidence 999887654 467899999999996 999999999999999999999999988 89999999999999999999999
Q ss_pred HHHHHHHcCCCCcccccccCCCC
Q 011364 460 ERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 460 dRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
|||+|++||.+|||||++|||++
T Consensus 246 eRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 246 DRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred HHHHHHHhCCCcHHHcccCCCCC
Confidence 99999999999999999999986
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=1.9e-63 Score=498.86 Aligned_cols=291 Identities=18% Similarity=0.181 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (487)
..+|++|+.|++++|+||.++||+||+||+|+..+..+ ...+|.+....+ ....+
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~------------------------~~~~~ 57 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGP------------------------GASQG 57 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccc------------------------cccCC
Confidence 46899999999999999999999999999998766433 334554311100 00127
Q ss_pred cccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCc
Q 011364 224 KPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302 (487)
Q Consensus 224 ~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~ 302 (487)
+++||++|||+++ ++++++++|||+||||||||++ +.||++||||||||++|.|++|+|+++|+||++++..
T Consensus 58 ~~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------ 130 (306)
T PRK09350 58 KTLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------ 130 (306)
T ss_pred cceEEecCHHHHHHHHhhccccceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------
Confidence 8899999999998 5888999999999999999999 8999999999999999999999999999999999753
Q ss_pred cccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhh---hhhccc-cCccEEEE
Q 011364 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY---LTEEAF-GGCPVIVS 378 (487)
Q Consensus 303 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~---l~e~~~-~~~p~fi~ 378 (487)
.+|...++.+.++++++.+....+..++.+.+.+.|.. .....+.++.+..++. ++++.+ .+.|+||+
T Consensus 131 ------~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~ 202 (306)
T PRK09350 131 ------EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLS--NIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVY 202 (306)
T ss_pred ------CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCC--CcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 12223344556666666666666777777666665541 0011122333333332 344443 23699999
Q ss_pred ecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-------cCCCcccHH-HHHHHHhcCCC
Q 011364 379 DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSYW-WYLDLRHYGSV 450 (487)
Q Consensus 379 ~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-------~g~~~~~~~-~yl~~~~~G~p 450 (487)
|||.+++|||++.++++++++|||||++|+ ||+||++|+++++++++++++ .|.++..++ |||+|+++|+|
T Consensus 203 ~yP~~~~~~a~~~~~~~~~~~rfdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~p 281 (306)
T PRK09350 203 HFPASQAALAKISTEDHRVAERFEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLP 281 (306)
T ss_pred cCccccCccccccCCCCCeeEEEEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCC
Confidence 999999999876666778999999999998 999999999999999999864 678888884 59999999999
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv 475 (487)
||||||||||||+|++||++|||||
T Consensus 282 p~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 282 DCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred CCCceEecHHHHHHHHcCCCCcccC
Confidence 9999999999999999999999997
No 37
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=2.8e-63 Score=491.00 Aligned_cols=271 Identities=29% Similarity=0.455 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (487)
|++||++++++|+||.++||+||+||+|++++++|+++ |.+.. . ...+..+|
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~-~--------------------------~~~~~~~~ 52 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPS-R--------------------------LHPGKFYA 52 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceecc-c--------------------------cCCCceee
Confidence 57899999999999999999999999999999988766 65421 1 01133456
Q ss_pred cccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccc
Q 011364 228 LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMD 306 (487)
Q Consensus 228 L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~ 306 (487)
|++|||+||| ++++|++|||+|+||||+|++++.|| +||||||||++|.|++++|+++|++|++++..+.+.
T Consensus 53 L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~------ 125 (280)
T cd00777 53 LPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV------ 125 (280)
T ss_pred cccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC------
Confidence 9999999997 67899999999999999999977666 599999999999999999999999999999887542
Q ss_pred cccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEe-cCCcCc
Q 011364 307 FFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YPKEIK 385 (487)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~-~P~~~~ 385 (487)
....||+++||.||++.+ +. ...|+.|+... +. ....++++++++ ||+...
T Consensus 126 ----------------~~~~p~~rity~eA~~~~---~~----~~~~~~d~~~~-~~----~~~~~~~~~~~~pf~~~~~ 177 (280)
T cd00777 126 ----------------ELTTPFPRMTYAEAMERY---GF----KFLWIVDFPLF-EW----DEEEGRLVSAHHPFTAPKE 177 (280)
T ss_pred ----------------CCCCCCceeeHHHHHHHh---CC----CCccccCCccc-CC----hhHHHHHHHHhCCCcCCCc
Confidence 124589999999999864 22 13466554310 00 000113334444 443322
Q ss_pred ---cccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCC----cccHHHHHHHHhcCCCCccceecc
Q 011364 386 ---AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLG 458 (487)
Q Consensus 386 ---pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~----~~~~~~yl~~~~~G~pP~~G~giG 458 (487)
|++ +.++++++++|||||++|+ ||+||++|+|++++|++++++.|++ ++.++|||+|++||+|||||||||
T Consensus 178 ~~~~~~-~~~~~~~~~~~fdl~~~G~-Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giG 255 (280)
T cd00777 178 EDLDLL-EKDPEDARAQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALG 255 (280)
T ss_pred ccchhh-hcCCccCeeEEEEEEeCCE-EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEh
Confidence 232 2333336899999999997 9999999999999999999999988 456799999999999999999999
Q ss_pred HHHHHHHHcCCCCcccccccCCCCC
Q 011364 459 FERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 459 idRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
+|||+|++||.+|||||++|||+.+
T Consensus 256 idRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 256 LDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred HHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999864
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-56 Score=421.19 Aligned_cols=296 Identities=22% Similarity=0.244 Sum_probs=230.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
....+..|+.|++.||+||.++||+||+||.|+.++. +..-.+|.+....+ +. .+
T Consensus 12 ~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~------------------~~----~~-- 67 (322)
T COG2269 12 SIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGP------------------GG----AK-- 67 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEecc------------------Cc----cc--
Confidence 4556999999999999999999999999999998765 34445665433221 00 01
Q ss_pred CcccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccC
Q 011364 223 EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301 (487)
Q Consensus 223 ~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~ 301 (487)
+.++||++|||+|+ +|+++|.++||||++||||++. +++|+|||||||||+.++||+.+|+.+.+|++.++....
T Consensus 68 ~~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~--- 143 (322)
T COG2269 68 GKPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVE--- 143 (322)
T ss_pred cceeeeecCcHHHHHHHHHccCCcchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCC---
Confidence 57899999999998 7999999999999999999996 999999999999999999999999999999999987642
Q ss_pred ccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhh---hc-cccCccEEE
Q 011364 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---EE-AFGGCPVIV 377 (487)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~---e~-~~~~~p~fi 377 (487)
.+.+ +..+.+..+++.+.....-.+..+.+++.++... -+++.++.+.+.++ |+ ++.++|+||
T Consensus 144 ~E~l---------s~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~----~~~~~d~L~~~lf~~~VEP~lg~~rpt~l 210 (322)
T COG2269 144 AERL---------SYQEAFLRYLGIDPLSADKTELREAAAKLGLSAA----TDEDWDTLLQLLFVEGVEPNLGKERPTFL 210 (322)
T ss_pred ccee---------eHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCC----CccCHHHHHHHHHHhhcCcccCCCCceEE
Confidence 1111 2334444455555444333333344444444321 12344455555443 33 445689999
Q ss_pred EecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCC
Q 011364 378 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGS 449 (487)
Q Consensus 378 ~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-------~g~~~~~~-~~yl~~~~~G~ 449 (487)
+|||..++.++...+.|+.+++|||||+.|+ ||+||.-+..|.++|+++++. .|+..-++ +.||.|+.. |
T Consensus 211 y~fP~~qaaLA~i~~~D~rVAERFElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-m 288 (322)
T COG2269 211 YHFPASQAALAQISTGDPRVAERFELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-M 288 (322)
T ss_pred EeCcHHHHHhhccCCCCcchhhhhhheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-C
Confidence 9999999999988888889999999999999 999999999999998888753 23333333 669999998 9
Q ss_pred CCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 450 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 450 pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
|||+|++||+|||+|+++|..+|.||++||...
T Consensus 289 P~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 289 PPCSGVALGFDRLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred CCcccceecHHHHHHHHcCcchHHHHhhccccc
Confidence 999999999999999999999999999999763
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.86 E-value=2.7e-21 Score=171.67 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=100.4
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCCCCCcEEEEE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L~~gd~V~V~ 89 (487)
+++++++.+. ..|+.|+|+|||+++|.+|+++|++|+|++| .+|||++.+... +..++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g--~~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYG--IVQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCe--eEEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 5667777653 5689999999999999999999999999996 599999865433 566777 9999999999
Q ss_pred eeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCccc---cChhhhhhcccccCCChh
Q 011364 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (487)
Q Consensus 90 G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~ 143 (487)
|++.+++. ..+++||++++++||++| .++|+..++ .+.+...+|||||||++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99997643 346799999999999999 568886544 346666699999999864
No 40
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.82 E-value=1e-19 Score=153.95 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=88.8
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCC--ccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~--~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
+|+|+|||+++|.+||++|++|||++| .+|||++.+ ...|+.++. |+.||+|.|+|++.+++...+++||++++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTG--IVQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCe--eEEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 389999999999999999999999996 499999865 234666777 99999999999999988777789999999
Q ss_pred EEEEccCCCCCCCCccccChhhhhhcccc
Q 011364 109 IVLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (487)
Q Consensus 109 i~vls~~~~~~p~~~~~~~~~~~r~~r~l 137 (487)
++|+|+|. ++|++.+. +.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 99999996 68998664 88899999986
No 41
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.80 E-value=8.1e-19 Score=149.70 Aligned_cols=101 Identities=19% Similarity=0.353 Sum_probs=86.5
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEEEEE
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V~V~ 89 (487)
+++++... ..|+.|+|+|||+++|.+|+++|++|||++| .+|+|++.+. ..|+.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITPE------LDGEEVTVAGWVHEIRDLGGIKFVILRDREG--IVQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCchh------hCCCEEEEEEEEEeeeccCCeEEEEEecCCe--eEEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 45566543 5789999999999999999999999999997 4999998653 23667777 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCCCc
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQK 123 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~ 123 (487)
|++.+++...+++||+++++++|++|..++|++.
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~ 105 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDP 105 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCc
Confidence 9999988777789999999999999987788864
No 42
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.78 E-value=1.9e-18 Score=147.40 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=82.4
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
.|+|+|||+++|.+|+++|++|+|+++ .+|||++.+. ..|..+.+ .|+.||+|.|+|++.+++++ ++||+++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~~-~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFKK-LLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHHh-cCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 389999999999999999999999995 6999998653 33444322 29999999999999998874 7999999
Q ss_pred EEEEEccCCCCCCCCcccc---ChhhhhhcccccC
Q 011364 108 KIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRP 139 (487)
Q Consensus 108 ~i~vls~~~~~~p~~~~~~---~~~~~r~~r~l~~ 139 (487)
+++|||+|. +|+|.+.+ +.++.+++||||+
T Consensus 76 ~~~ils~~~--~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSL--RPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccC--CCCCCCccCcCChhheeecccccC
Confidence 999999997 45554433 4566668999885
No 43
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.72 E-value=6.5e-17 Score=130.93 Aligned_cols=81 Identities=41% Similarity=0.808 Sum_probs=73.2
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEE
Q 011364 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (487)
Q Consensus 32 V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~v 111 (487)
|+|+|||+++|.+|+++|++|||+++.+++||+++.+...|+.++. |+.||+|.|+|.+.+++.+.+++||+++++++
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~i 79 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIEV 79 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEEE
Confidence 8999999999999999999999999866899999876555677778 99999999999999998777799999999999
Q ss_pred Ecc
Q 011364 112 VGK 114 (487)
Q Consensus 112 ls~ 114 (487)
++.
T Consensus 80 l~~ 82 (82)
T cd04318 80 LGE 82 (82)
T ss_pred ecC
Confidence 863
No 44
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.72 E-value=7.1e-17 Score=136.29 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=75.2
Q ss_pred EEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc-----cchHhHhccCCCCCcEEEEEeeEeecCCC-----C
Q 011364 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~-----~~~~~~~~~~L~~gd~V~V~G~~~~~~~~-----~ 99 (487)
.|+|+|||+++|.+| +++|++|||+++ .+||+++... ..++.++. |+.||+|.|+|++.++++. .
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGY--TIQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCc--eEEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 999999999996 5999998653 12445667 9999999999999987552 2
Q ss_pred ceEEEEEeEEEEEccCCCCCCCCc
Q 011364 100 QKVELKVNKIVLVGKSDPSYPIQK 123 (487)
Q Consensus 100 ~~~el~~~~i~vls~~~~~~p~~~ 123 (487)
+++||+++++++|++|...+|++.
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~ 100 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQL 100 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCC
Confidence 689999999999999976688754
No 45
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.8e-17 Score=159.95 Aligned_cols=198 Identities=21% Similarity=0.320 Sum_probs=129.2
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc-Ccc---cc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKP---AF 227 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~ 227 (487)
..++..++++|.+.||.|++.|.+.+. .+..+.+|.+++|+|++- ...|| +.. .-
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d-------~~NFDaLn~P~dHPARdm--------------qDTFy~~~~~~~~l 172 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETD-------FYNFDALNIPQDHPARDM--------------QDTFYLKDDREKLL 172 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCccccc-------ccchhhhcCCCCCCcccc--------------cceEEEcCCCCcee
Confidence 348889999999999999999966552 233344444444443321 01233 221 23
Q ss_pred cccchhhh-HHHHhcc---CCceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHHHHHhhccC
Q 011364 228 LTVSGQLN-AETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVVRYILDNC 301 (487)
Q Consensus 228 L~~Spql~-l~ll~~g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~~~~~~~~~ 301 (487)
|++..--. -+.|... =-|+|.+|+|||+|.. +.+|+|||+|+|.-... .++.+|+-.++++++.++..-
T Consensus 173 LRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~~---- 247 (335)
T COG0016 173 LRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGED---- 247 (335)
T ss_pred ecccCcHhhHHHHHhCCCCCceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCCC----
Confidence 33322222 2444443 3589999999999998 79999999999964432 245555555555444432110
Q ss_pred ccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecC
Q 011364 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 381 (487)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P 381 (487)
..+. +.+.++
T Consensus 248 -----------------------------------------------~~vR------------frpsyF----------- 257 (335)
T COG0016 248 -----------------------------------------------VKVR------------FRPSYF----------- 257 (335)
T ss_pred -----------------------------------------------cceE------------eecCCC-----------
Confidence 0001 223344
Q ss_pred CcCccccccccCCCCceEEEEEEecC---eeeeechhHhhchHHHHHHHHHHcCCCcccH-HHHHHHHhcCCCCccceec
Q 011364 382 KEIKAFYMRQNDDGRTVAAMDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSY-WWYLDLRHYGSVPHAGFGL 457 (487)
Q Consensus 382 ~~~~pf~~~~~~~~~~~~~fdl~~~G---~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~-~~yl~~~~~G~pP~~G~gi 457 (487)
||+.| +...|++++| +=||+|+++-. .+.++..|++++.| .| .|||
T Consensus 258 ----PFTEP-------S~Evdv~~~~~~~WlEi~G~Gmv~------P~VL~~~G~~~~~~~Gf-------------AfGl 307 (335)
T COG0016 258 ----PFTEP-------SAEVDVYCPGCGGWLEILGCGMVH------PNVLEAVGIDPEEYSGF-------------AFGL 307 (335)
T ss_pred ----CCCCC-------eEEEEEEEcCCCCEEEEecccccC------HHHHHhcCCCCCcceEE-------------EEee
Confidence 78765 5668888873 45999999988 77888999887654 22 6899
Q ss_pred cHHHHHHHHcCCCCcccc
Q 011364 458 GFERLVQFATGVENIRDA 475 (487)
Q Consensus 458 GidRL~m~l~g~~~Irdv 475 (487)
|+|||.|+.+|+++||+.
T Consensus 308 GlERlAMLkygI~DIR~l 325 (335)
T COG0016 308 GLERLAMLKYGIPDIRDL 325 (335)
T ss_pred cHHHHHHHHhCCcHHHHH
Confidence 999999999999999974
No 46
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.70 E-value=1.6e-16 Score=129.82 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=71.5
Q ss_pred EEEEEEEEeeeec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCC----ceEEEE
Q 011364 31 MIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELK 105 (487)
Q Consensus 31 ~V~v~GwV~~iR~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~----~~~el~ 105 (487)
+|+|+|||+++|+ +|+++|++|||++| ..+||+++.+...|+.++. |+.||+|.|+|++.+++.+. +++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 69999999999998 4699999876556777778 99999999999999988654 789999
Q ss_pred EeEEEEEcc
Q 011364 106 VNKIVLVGK 114 (487)
Q Consensus 106 ~~~i~vls~ 114 (487)
++++++|++
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999984
No 47
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.68 E-value=1.6e-16 Score=154.45 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=127.4
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
+++.+.||++|...||.||.+|.+.+.. .....++.+++|++++..+.+.-..+. .......-|+++
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~-------~nFD~Ln~p~dHpaR~~~Dtfyi~~p~------~~~~~~~vLRTh 86 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEF-------YNFDALNIPQDHPARDMQDTFYISNPY------SAEEDYSVLRTH 86 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHH-------HHTGGGTSTTTSCGGCGTTSEBSCSSS------BCECSSEEE-SS
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeH-------HHHHhhCcCCCccccccccceeeeccc------cccchhhhhhhh
Confidence 4578899999999999999999997631 112445544444433211111000000 000233345543
Q ss_pred hhhhH-HHHh---ccCCceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHHHHHHhhccCcccc
Q 011364 232 GQLNA-ETYA---TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVVRYILDNCKEDM 305 (487)
Q Consensus 232 pql~l-~ll~---~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~~~~~~~~~~~~l 305 (487)
.--.+ +.|. ..=-|+|+||+|||+|.. +.+|+|||+|+|.-.... ++.++...++.++++++..
T Consensus 87 ts~~~~~~l~~~~~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~--------- 156 (247)
T PF01409_consen 87 TSPGQLRTLNKHRPPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI--------- 156 (247)
T ss_dssp THHHHHHHHTTTSHSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT---------
T ss_pred hhHHHHHHHHHhcCCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc---------
Confidence 33333 4441 123589999999999998 799999999999877654 4667766666666655311
Q ss_pred ccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCc
Q 011364 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (487)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~ 385 (487)
+. .++ +.+.++
T Consensus 157 ----------------------------------------~~--~~r------------~~ps~f--------------- 167 (247)
T PF01409_consen 157 ----------------------------------------DV--KVR------------FRPSYF--------------- 167 (247)
T ss_dssp ----------------------------------------TE--EEE------------EEECEE---------------
T ss_pred ----------------------------------------cc--ceE------------eecCCC---------------
Confidence 00 000 112222
Q ss_pred cccccccCCCCceEEEEEEe----c-CeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHH
Q 011364 386 AFYMRQNDDGRTVAAMDMLV----P-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFE 460 (487)
Q Consensus 386 pf~~~~~~~~~~~~~fdl~~----~-G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGid 460 (487)
||+.+ +...|+++ + |+-||+++++-. .+.+++.|+|.+ -|..+||||+|
T Consensus 168 PfteP-------s~e~~i~~~~~~~~~wiEvgg~G~vh------P~Vl~~~gid~~-------------~~~~A~G~Gle 221 (247)
T PF01409_consen 168 PFTEP-------SREADIYCGVCKGGGWIEVGGCGMVH------PEVLENWGIDEE-------------YPGFAFGLGLE 221 (247)
T ss_dssp TTEEE-------EEEEEEEEECTTTTCEEEEEEEEEE-------HHHHHHTT--TT-------------SEEEEEEEEHH
T ss_pred CcccC-------CeEEEEEEeeccCCCceEEeeccccc------HhhhhccCcCcc-------------ceEEEecCCHH
Confidence 67755 45688888 2 334999999877 677888888722 25668999999
Q ss_pred HHHHHHcCCCCcccc
Q 011364 461 RLVQFATGVENIRDA 475 (487)
Q Consensus 461 RL~m~l~g~~~Irdv 475 (487)
||+|+..|+++||+.
T Consensus 222 Rlam~~~gi~diR~~ 236 (247)
T PF01409_consen 222 RLAMLKYGIPDIRLL 236 (247)
T ss_dssp HHHHHHHT-SSGGHH
T ss_pred HHHHHHcCCchHHHH
Confidence 999999999999974
No 48
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.68 E-value=2.8e-16 Score=157.24 Aligned_cols=199 Identities=17% Similarity=0.222 Sum_probs=126.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT-- 229 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-- 229 (487)
+.+.+.||++|...||.|+++|.|++.. +..+.+|.+++|++++.- +.=|.....-|+
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~-------~NFdaLn~P~dHPaR~~~-------------DTfyI~~~~lLRTh 170 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDY-------YNFEALNIPKDHPARDMQ-------------DTFYIDDGLLLRTH 170 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHH-------HHHHHhCCCCCCcccccC-------------ceEEEcCCceeecc
Confidence 4588899999999999999999997632 112334443444433211 111222223344
Q ss_pred cchhhhHHHHhcc-C-CceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHHHHHhhccCcccc
Q 011364 230 VSGQLNAETYATA-L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVVRYILDNCKEDM 305 (487)
Q Consensus 230 ~Spql~l~ll~~g-~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~~~~~~~~~~~~l 305 (487)
+||-+. +.|... . -|+|++|+|||++.. +.+|.|+|+|+|.-... .++.++...++.+++.++..-. .
T Consensus 171 TSp~qi-r~L~~~~~Pirif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg~~~-----~- 242 (339)
T PRK00488 171 TSPVQI-RTMEKQKPPIRIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFGEDV-----K- 242 (339)
T ss_pred CcHHHH-HHHHhcCCCeEEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcCCCC-----e-
Confidence 444432 444333 2 289999999999987 78999999999976655 3566666666666665542100 0
Q ss_pred ccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCc
Q 011364 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (487)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~ 385 (487)
+. +.+.++
T Consensus 243 ---------------------------------------------~R------------~rpsyF--------------- 250 (339)
T PRK00488 243 ---------------------------------------------IR------------FRPSYF--------------- 250 (339)
T ss_pred ---------------------------------------------EE------------ecCCCC---------------
Confidence 00 112222
Q ss_pred cccccccCCCCceEEEEEEec-------------CeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCc
Q 011364 386 AFYMRQNDDGRTVAAMDMLVP-------------RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPH 452 (487)
Q Consensus 386 pf~~~~~~~~~~~~~fdl~~~-------------G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~ 452 (487)
||+.| +...|+.++ |+=||+|+++-. .+.++..|+|++.|..
T Consensus 251 PFTeP-------S~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~------p~vl~~~gid~~~~~G------------ 305 (339)
T PRK00488 251 PFTEP-------SAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVH------PNVLRNVGIDPEEYSG------------ 305 (339)
T ss_pred CCCCC-------ceEEEEEEeccCCCcccccCCCCceEEeccCccC------HHHHHHcCCCcccceE------------
Confidence 56543 234555553 545999999877 6677888998764310
Q ss_pred cceeccHHHHHHHHcCCCCcccc
Q 011364 453 AGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 453 ~G~giGidRL~m~l~g~~~Irdv 475 (487)
-.||||+|||+|+..|+++||+.
T Consensus 306 ~AfG~GleRlaMl~ygi~DiR~~ 328 (339)
T PRK00488 306 FAFGMGIERLAMLKYGIDDIRLF 328 (339)
T ss_pred EEEeecHHHHHHHHhCCcHHHHH
Confidence 14599999999999999999964
No 49
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.67 E-value=4.4e-16 Score=126.67 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=70.9
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCCCCCcEEEEEeeEeecCCC---CceEEEEE
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKV 106 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L~~gd~V~V~G~~~~~~~~---~~~~el~~ 106 (487)
.|+++|||+++|.+|+++|++|||+++. +|++++.+... ++.++. |+.||+|.|+|++.+++.+ .+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 3899999999999999999999999974 99999865433 666777 9999999999999999877 77899999
Q ss_pred eEEEEEcc
Q 011364 107 NKIVLVGK 114 (487)
Q Consensus 107 ~~i~vls~ 114 (487)
+++++|++
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999985
No 50
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.67 E-value=1e-16 Score=166.56 Aligned_cols=216 Identities=14% Similarity=0.128 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhhcCCeEEEe-CCeeeccCCCCCCCCceeeecCCCcccccCC---C----------CCCCCCCCCCCccc
Q 011364 152 NALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSREAAES---P----------VDAIPKTKDGLIDW 217 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~-TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~ 217 (487)
.+++..||++|.++||.|+. .|.+.+. --..-.+|.+++|.+++.|+... | ++++...|+.+ ..
T Consensus 224 ~~~~~ei~~if~~mGF~e~~~g~~ves~-f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G-~~ 301 (492)
T PLN02853 224 LKVRQQFRKIFLQMGFEEMPTNNFVESS-FWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESG-GY 301 (492)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCeech-hhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcC-CC
Confidence 34788899999999999994 5666552 21222234334444333333111 1 11222233211 01
Q ss_pred cccccCcccccccchhhhH---------HHHh----cc--CCceEEEecccccCCCCCCcccccccceeeEEccC--CHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA---------ETYA----TA--LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLK 280 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l---------~ll~----~g--~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~ 280 (487)
....|+.+|-...|..+-| +.|. .+ =-|+|.|++|||+|.. +.+|+|||+|+|.-.... ++.
T Consensus 302 gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~ 380 (492)
T PLN02853 302 GSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLG 380 (492)
T ss_pred CccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHH
Confidence 1122333332222222222 2222 11 2389999999999998 799999999999766532 355
Q ss_pred HHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchH
Q 011364 281 DDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360 (487)
Q Consensus 281 ~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~ 360 (487)
+++.+++++++.+ |. ..+.
T Consensus 381 ~L~g~l~~f~~~l--------------------------------------------------g~---~~~R-------- 399 (492)
T PLN02853 381 DLIGVLEDFFSRL--------------------------------------------------GM---TKLR-------- 399 (492)
T ss_pred HHHHHHHHHHHHc--------------------------------------------------CC---ceEE--------
Confidence 5544444333221 00 0000
Q ss_pred HHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEec--C-eeeeechhHhhchHHHHHHHHHHcCCCccc
Q 011364 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP--R-IGELIGGSQREERLEYLEGRLDELKLNRDS 437 (487)
Q Consensus 361 ~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~--G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~ 437 (487)
+.+.++ ||+.| +...|++.+ | +=||+|+++-. .+.++..|++ +.
T Consensus 400 ----frP~yf---------------PfTEP-------S~Ei~v~~~~~gkWiEi~g~Gm~r------pevl~~~Gi~-~~ 446 (492)
T PLN02853 400 ----FKPAYN---------------PYTEP-------SMEIFSYHEGLKKWVEVGNSGMFR------PEMLLPMGLP-ED 446 (492)
T ss_pred ----EecCCC---------------CCCCC-------eEEEEEEecCCCCEEEEecCcCcC------HHHHHhCCCC-Cc
Confidence 122222 77654 344556665 5 33999999988 7778888883 32
Q ss_pred HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 438 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 438 ~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
+ +--+||||+|||+|+.+|++|||+..
T Consensus 447 ~------------~~~A~GlGleRlaMl~ygi~DIR~l~ 473 (492)
T PLN02853 447 V------------NVIAWGLSLERPTMILYGIDNIRDLF 473 (492)
T ss_pred c------------eEEEEEecHHHHHHHHhCCcHHHHHh
Confidence 1 23579999999999999999999864
No 51
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.66 E-value=8.9e-16 Score=125.15 Aligned_cols=80 Identities=25% Similarity=0.548 Sum_probs=70.1
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc--hHhHhccCCCCCcEEEEEeeEeecCC---CCceEEEE
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELK 105 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~~~~~~~~L~~gd~V~V~G~~~~~~~---~~~~~el~ 105 (487)
.|+|+|||+++|.+|+++|++|||+++ .+|++++.+..+ ++.++. |+.||+|.|+|++.+++. ..+++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999999999999995 599999876433 556677 999999999999999875 46789999
Q ss_pred EeEEEEEcc
Q 011364 106 VNKIVLVGK 114 (487)
Q Consensus 106 ~~~i~vls~ 114 (487)
++++++|++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
No 52
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.62 E-value=2.2e-15 Score=157.56 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=123.7
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCC---C------------CCCCCCCCCCCcc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---P------------VDAIPKTKDGLID 216 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~------------~~~~~~~~~~~~~ 216 (487)
.+++..+|++|.++||.|+++|-...+.--..-.+|.+++|.+++.|+... | +++++..|+.+ .
T Consensus 232 ~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~G-~ 310 (494)
T PTZ00326 232 LKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVG-G 310 (494)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHhccC-C
Confidence 457889999999999999998743333332333344444444444333111 1 11222333211 0
Q ss_pred ccccccCccc--------ccccchhhhH-HHHhc--------c---CCceEEEecccccCCCCCCcccccccceeeEEcc
Q 011364 217 WSQDFFEKPA--------FLTVSGQLNA-ETYAT--------A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 217 ~~~~~~~~~~--------~L~~Spql~l-~ll~~--------g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (487)
.....|+.+| -|++-.--.. +++.. + =-|+|+|++|||+|.. +.+|+|||+|+|.....
T Consensus 311 ~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~ 389 (494)
T PTZ00326 311 YGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETL-DATHLAEFHQVEGFVID 389 (494)
T ss_pred cCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCC-CCCcCceeEEEEEEEEe
Confidence 1112233222 2322221111 23322 1 2489999999999998 79999999999998775
Q ss_pred CC--HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccc
Q 011364 277 AD--LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354 (487)
Q Consensus 277 ~~--~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~ 354 (487)
.+ ..+++.++.++++.+ |.. .+.
T Consensus 390 ~~~s~~~L~~~l~~f~~~l--------------------------------------------------G~~---~~R-- 414 (494)
T PTZ00326 390 RNLTLGDLIGTIREFFRRI--------------------------------------------------GIT---KLR-- 414 (494)
T ss_pred CCCCHHHHHHHHHHHHHhc--------------------------------------------------CCC---ceE--
Confidence 43 223322222222111 100 000
Q ss_pred cccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecC----eeeeechhHhhchHHHHHHHHHH
Q 011364 355 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR----IGELIGGSQREERLEYLEGRLDE 430 (487)
Q Consensus 355 ~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G----~~El~~G~~r~~~~~~~~~~~~~ 430 (487)
+.+.++ ||+.| +...|.+++| + ||+|++.-. .+.++.
T Consensus 415 ----------frP~yf---------------PfTEP-------S~Ev~v~~~~~gkWI-EIgg~Gm~r------pevL~~ 455 (494)
T PTZ00326 415 ----------FKPAFN---------------PYTEP-------SMEIFGYHPGLKKWV-EVGNSGIFR------PEMLRP 455 (494)
T ss_pred ----------EecCCC---------------CCCCC-------eeEEEEEecCCCcEE-EEeCcCccC------HHHHHh
Confidence 122233 77754 4456677764 6 999999877 667777
Q ss_pred cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 431 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 431 ~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
.|++.. + +--+||||+|||+|+.+|++|||+..
T Consensus 456 ~Gi~~~-~------------~~~A~GlGleRlaMi~ygi~DIR~l~ 488 (494)
T PTZ00326 456 MGFPED-V------------TVIAWGLSLERPTMIKYGIKNIRDLF 488 (494)
T ss_pred cCCCCc-c------------eEEEEEecHHHHHHHHhCCcHHHHHh
Confidence 787431 1 23579999999999999999999853
No 53
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.57 E-value=1.2e-14 Score=149.39 Aligned_cols=112 Identities=22% Similarity=0.324 Sum_probs=76.9
Q ss_pred CChhhHHHHHH-----HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 140 R~~~~~~~~~~-----Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
|.+..++++.. .+.+.+++|++|...||.||.||.|+.... |.. .+.. .+..
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~------~e~--~g~~----~g~~----------- 246 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEY------IER--MGID----NDTE----------- 246 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH------HHH--hCCC----Cccc-----------
Confidence 77889999999 999999999999999999999999985421 100 0000 0000
Q ss_pred ccccccc--cCcccccc--cchhhhHHHHh-----ccCCceEEEecccccCCCCCCcccccccceeeEEccC
Q 011364 215 IDWSQDF--FEKPAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (487)
Q Consensus 215 ~~~~~~~--~~~~~~L~--~Spql~l~ll~-----~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~ 277 (487)
..... .+...+|+ ..|+++..+.. ..--|+|+||+|||+|.. +.+|++||+|++++..+.
T Consensus 247 --i~~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs 315 (417)
T PRK09537 247 --LSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGS 315 (417)
T ss_pred --chhhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCC
Confidence 00001 12345666 46666553221 112379999999999986 789999999999998754
No 54
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.54 E-value=1.8e-13 Score=132.33 Aligned_cols=272 Identities=17% Similarity=0.150 Sum_probs=153.3
Q ss_pred HHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCce-eeecCCCcccccCCCCCCCCCCCCCCccccc-cccCccc
Q 011364 154 LAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEKPA 226 (487)
Q Consensus 154 i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 226 (487)
.+..|++||. +.+.+.|..|+++....+ -.+.+. +.. |+ .++. ++-+..+
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sG-lnD~LnG~E~-----------pV-----------~f~~k~~~~~~~ 59 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSG-LNDNLNGVEK-----------PV-----------SFKVKALPDATL 59 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCC-CccCCCCccc-----------ce-----------EeecCCCCCcee
Confidence 3555666664 479999999999986543 111111 000 00 0000 0112333
Q ss_pred ccccchhhhHHHHh--ccC---CceEEEeccccc-CCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhcc
Q 011364 227 FLTVSGQLNAETYA--TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300 (487)
Q Consensus 227 ~L~~Spql~l~ll~--~g~---~kvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~ 300 (487)
-.-+|---|||+.. -+| +.+|+=..+.|. |+. +..|.-==-|-|||.....-+.-++...+.++.++..+...
T Consensus 60 eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~t 138 (309)
T cd00645 60 EVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKET 138 (309)
T ss_pred EEeeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHH
Confidence 34455555666433 245 458888888886 565 78997656666676665433344444455555554444321
Q ss_pred CccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc-hHHHhhhhhccccCccEEEEe
Q 011364 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIVSD 379 (487)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~e~~~~~~p~fi~~ 379 (487)
.. .+. .. ...+...+...+.=+|.+|..+.+- +++ .+.|..++..+ +.|||+.
T Consensus 139 e~-~~~--~~------y~~~~~~Lp~~i~FitsqeL~~~YP--------------~l~~keRE~~i~ke~---gaVFi~~ 192 (309)
T cd00645 139 EL-EVN--EK------YPQLEPILPEEITFITSQELEDRYP--------------DLTPKEREDAICKEH---GAVFIIG 192 (309)
T ss_pred HH-HHH--HH------chhhhhcCCCceEEecHHHHHHHCC--------------CCCHHHHHHHHHHHh---CcEEEEe
Confidence 10 000 00 0011112222222234444333210 122 23455555544 4677776
Q ss_pred cCCcCc---cccccccCCCCceEEEEEEec------CeeeeechhHhhchHHHHHHHHHHcC-CCcccHHHHHHHHhcC-
Q 011364 380 YPKEIK---AFYMRQNDDGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG- 448 (487)
Q Consensus 380 ~P~~~~---pf~~~~~~~~~~~~~fdl~~~------G~~El~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~yl~~~~~G- 448 (487)
--..++ |--.+.++-+.+..+=|+++- .+ ||.++++|.++ +.+.++++..| .+...+.| ++++..|
T Consensus 193 IG~~L~~g~~Hd~RapDYDDW~LNGDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~ 269 (309)
T cd00645 193 IGGKLSDGKKHDGRAPDYDDWTLNGDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGE 269 (309)
T ss_pred ccCcCCCCCcCCCCCCCCcCccccceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCC
Confidence 433322 111111111223444555542 57 99999999999 88889999888 56667776 9999999
Q ss_pred CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 449 SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 449 ~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
+|||+|.|||+|||+|+|||..+|.+|++=
T Consensus 270 LP~TiGgGIGqsRL~M~LL~k~HIgEVqas 299 (309)
T cd00645 270 LPQTIGGGIGQSRLCMFLLQKAHIGEVQAS 299 (309)
T ss_pred CCccccccccHHHHHHHHhccchhcceeec
Confidence 999999999999999999999999999864
No 55
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.54 E-value=2.4e-13 Score=132.64 Aligned_cols=277 Identities=16% Similarity=0.102 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-ccc
Q 011364 149 RVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFF 222 (487)
Q Consensus 149 ~~Rs~i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 222 (487)
+.....++.|+++|. +.+.+.|..|+++....+-.-++--+..+ + .++. +.-
T Consensus 9 ~~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~p-----------V-----------~F~~k~~~ 66 (327)
T PRK05425 9 IETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKP-----------V-----------SFKVKDLP 66 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecc-----------e-----------EeeccCCC
Confidence 333445566666664 47999999999998654221111000000 0 0000 011
Q ss_pred CcccccccchhhhHHHHhc--cC---CceEEEeccccc-CCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 296 (487)
Q Consensus 223 ~~~~~L~~Spql~l~ll~~--g~---~kvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~ 296 (487)
+.++-..+|---|||+... +| +.+|+=..+.|. |+. +..|.-==-|-|||.....-+.-++...+.++.+...
T Consensus 67 ~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ 145 (327)
T PRK05425 67 DATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKA 145 (327)
T ss_pred CCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHH
Confidence 2233344555556665443 55 368888888776 555 7899766667777766543344445555555555554
Q ss_pred hhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc-hHHHhhhhhccccCccE
Q 011364 297 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPV 375 (487)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~e~~~~~~p~ 375 (487)
+......-...+. .+ +.+...+.=||-+|..+.+- +++ .+.|..++..+ +.|
T Consensus 146 ik~te~~~~~~y~---------~~-~~Lp~~i~FitsqeL~~~YP--------------~l~~keRE~~i~ke~---gaV 198 (327)
T PRK05425 146 IKATEKAVSKKYP---------LL-PFLPEEITFITSQELEDRYP--------------DLTPKEREDAIAKEY---GAV 198 (327)
T ss_pred HHHHHHHHHHhCc---------cc-ccCCCceEEecHHHHHHHCC--------------CCCHHHHHHHHHHHh---CcE
Confidence 4322100000000 00 11111112234444332210 122 23455555544 467
Q ss_pred EEEecCCcCc---cccccccCCCCceEEEEEEec------CeeeeechhHhhchHHHHHHHHHHcC-CCcccHHHHHHHH
Q 011364 376 IVSDYPKEIK---AFYMRQNDDGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLR 445 (487)
Q Consensus 376 fi~~~P~~~~---pf~~~~~~~~~~~~~fdl~~~------G~~El~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~yl~~~ 445 (487)
||+.--..++ |--.+.++-+.+..+=|+++- .+ ||.++++|.+ ++.+.++++..| .+...+.||+++
T Consensus 199 Fi~~IG~~L~~g~~Hd~RapDYDDW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l- 275 (327)
T PRK05425 199 FLIGIGGKLSDGKPHDGRAPDYDDWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL- 275 (327)
T ss_pred EEEeccCcCCCCCcCCCCCCCCcCcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-
Confidence 7776433322 111111111223344555442 57 9999999998 999999999988 577788999999
Q ss_pred hcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 446 HYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 446 ~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
..| +|||+|.|||+|||+|+|||.++|.+|++=
T Consensus 276 l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~s 309 (327)
T PRK05425 276 LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQAS 309 (327)
T ss_pred HhCCCCCcccccccHHHHHHHHhccchhcccccc
Confidence 777 999999999999999999999999999863
No 56
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.54 E-value=3.9e-14 Score=145.20 Aligned_cols=104 Identities=23% Similarity=0.346 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc--cCcc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF--FEKP 225 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 225 (487)
..-.+.+.+.+|++|...||.||.||+|+...- -+.+...... + ...+. ++..
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~---~E~m~~~~g~-----------e-----------I~n~Iyk~ee~ 293 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEY---IERMGIDNDT-----------E-----------LSKQIFRVDKN 293 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHH---HHhhcCccCC-----------c-----------ccccceEecCc
Confidence 344688999999999999999999999983211 0001000000 0 00000 1223
Q ss_pred cccc--cchhhhHHHHh-----ccCCceEEEecccccCCCCCCcccccccceeeEEccC
Q 011364 226 AFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (487)
Q Consensus 226 ~~L~--~Spql~l~ll~-----~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~ 277 (487)
.+|+ ..|+|+..+.. ..-.|+|+||+|||+|.. +.+|+.||+|++++.+..
T Consensus 294 lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~ 351 (453)
T TIGR02367 294 FCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGS 351 (453)
T ss_pred eEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECC
Confidence 4566 66777643321 123499999999999987 789999999999998753
No 57
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.53 E-value=3.6e-13 Score=131.67 Aligned_cols=68 Identities=24% Similarity=0.182 Sum_probs=62.2
Q ss_pred eeeechhHhhchHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 409 GELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 409 ~El~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~yl~~~~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
.||.++++|. +++.+.++++..| .+...+.||++ +..| +|+|+|.|||+|||+|+|||..+|.+|++=
T Consensus 266 ~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~s 335 (348)
T PTZ00213 266 LELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQCS 335 (348)
T ss_pred eecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceeee
Confidence 5999999999 9999999999998 57778899999 6667 999999999999999999999999999763
No 58
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.48 E-value=4e-13 Score=137.81 Aligned_cols=102 Identities=19% Similarity=0.311 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhcC---CeEEEe--CCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 011364 153 ALAYATHKFFQEN---GFIWIS--SPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (487)
Q Consensus 153 ~i~~~iR~ff~~~---gF~EV~--TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (487)
.+.+.|+++|.+. ||.+++ .|+.+...+ | ..++.+++|++++ ..++=|.+...-
T Consensus 72 ~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~N------F--D~L~~P~dHPaR~-------------~~DTfy~~~~~l 130 (402)
T PLN02788 72 ILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQN------F--DDVLVPPDHVSRS-------------YNDTYYVDAQTV 130 (402)
T ss_pred HHHHHHHHHHhhcccCCcEEecCCCCccchhhh------h--hhhCCCCCCCccC-------------ccceEEecCCcc
Confidence 3677788899887 999998 566554322 2 3344433443332 122333455566
Q ss_pred cccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEcc
Q 011364 228 LTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 228 L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (487)
|++..--+. ++|..+-.|++.+|+|||+|.+ +.+|.|+|+|+|.-+.+
T Consensus 131 LRTHTSa~q~~~l~~~~~~~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 131 LRCHTSAHQAELLRAGHTHFLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred ccCCCcHHHHHHHHhCCCcEEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 776666665 6776777899999999999999 79999999999987765
No 59
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.43 E-value=1.9e-13 Score=129.43 Aligned_cols=101 Identities=23% Similarity=0.317 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCCCce-eeecCCCcccccCCCCCCCCCCCCCCccccccccCccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFL 228 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 228 (487)
|+.+.+.+|++|.+.||.||.||.+++... +..+.... +...+ +.-+...+|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~L 55 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVG--------------------------AENEEDLYL 55 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeee--------------------------cCCCCEEEE
Confidence 678999999999999999999999988522 11110000 00001 112455689
Q ss_pred ccchhhhH-HHHhc----cCCceEEEecccccCCCCCC--cccccccceeeEEccCC
Q 011364 229 TVSGQLNA-ETYAT----ALSNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFAD 278 (487)
Q Consensus 229 ~~Spql~l-~ll~~----g~~kvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~ 278 (487)
++|....+ ++++. .--|+||||+|||+|.. +. +|+.||+|+++++.+.+
T Consensus 56 R~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 56 RPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred CCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 99999998 66554 34589999999999975 44 78899999999998743
No 60
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.40 E-value=1.1e-11 Score=120.87 Aligned_cols=278 Identities=15% Similarity=0.119 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCce-eeecCCCcccccCCCCCCCCCCCCCCcccccc-
Q 011364 148 ARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQD- 220 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (487)
++.-...+..|++||. +.+.++|..|+++....+ -.+.+. +..+ + .++..
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sG-lnD~LnG~Erp-----------V-----------~f~~k~ 61 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDG-TQDNLSGREKA-----------V-----------QVKVKA 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCC-CcCCCCCeecc-----------e-----------EeecCC
Confidence 4455566777777775 468999999999986542 211111 1000 0 00000
Q ss_pred ccCcccccccchhhhHHHHhc--cC---CceEEEeccccc-CCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHH
Q 011364 221 FFEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 294 (487)
Q Consensus 221 ~~~~~~~L~~Spql~l~ll~~--g~---~kvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~ 294 (487)
.-+..+-.-+|---|||+... +| +.+|+=..+-|. |+.-+..|.-==-|-|||.....-+.-++...+.++.+.
T Consensus 62 ~~~~~~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy 141 (330)
T TIGR00669 62 IPDAQFEVVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIY 141 (330)
T ss_pred CCCceeEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHH
Confidence 112333344555556675443 55 468997888886 552378897555566666654433333444444444444
Q ss_pred HHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc-hHHHhhhhhccccCc
Q 011364 295 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGC 373 (487)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~e~~~~~~ 373 (487)
+.+..... .+. .. + .+...+...+.=+|-+|..+.+- +++ .+.|..++..+ +
T Consensus 142 ~~ik~te~-~~~--~~-----y--~l~~~Lp~~I~FitsqeL~~~YP--------------~lt~keRE~~i~ke~---g 194 (330)
T TIGR00669 142 AAIRATEA-AVS--ER-----F--GLAPFLPDQIHFVHSEELVSRYP--------------DLDSKGRERAICKEL---G 194 (330)
T ss_pred HHHHHHHH-HHH--Hh-----c--CccccCCCceEEecHHHHHHHCC--------------CCCHHHHHHHHHHHh---C
Confidence 44432110 000 00 0 01111111111233333332210 122 23444555544 3
Q ss_pred cEEEEecCCcCc---cccccccC---------CCCceEEEEEEec------CeeeeechhHhhchHHHHHHHHHHcC-CC
Q 011364 374 PVIVSDYPKEIK---AFYMRQND---------DGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LN 434 (487)
Q Consensus 374 p~fi~~~P~~~~---pf~~~~~~---------~~~~~~~fdl~~~------G~~El~~G~~r~~~~~~~~~~~~~~g-~~ 434 (487)
.|||+.--..++ |--.+.++ ++....+=|+++- .+ ||.+-+.|. +.+.+.++++..| .+
T Consensus 195 aVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~d 272 (330)
T TIGR00669 195 AVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDED 272 (330)
T ss_pred cEEEEeccCcCCCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCc
Confidence 567665333221 11001001 1111134455442 46 999999998 6677778888888 67
Q ss_pred cccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 435 RDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 435 ~~~~~~yl~~~~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
...+.||+++ ..| +|||+|.|||+|||+|+|||..+|.+|++=
T Consensus 273 r~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~s 316 (330)
T TIGR00669 273 RLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQAS 316 (330)
T ss_pred cccCHHHHHH-HcCCCCccccccccHHHHHHHHhccccccceeee
Confidence 7889999999 667 999999999999999999999999999763
No 61
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.36 E-value=1.5e-11 Score=131.64 Aligned_cols=219 Identities=17% Similarity=0.235 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCC---CC---------CCCCCCCC-
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---PV---------DAIPKTKD- 212 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~~---------~~~~~~~~- 212 (487)
.-...+..+++.+|+.|...||.||+||.+.++- ...-.+|.+++|.++..++... |- +++...|+
T Consensus 230 ~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~-~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~ 308 (489)
T PRK04172 230 GKKHPYREFIDEVRDILVEMGFEEMKGPLVETEF-WNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEH 308 (489)
T ss_pred CCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecC-cccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhc
Confidence 3445677899999999999999999999998742 1222344444444433322110 00 01111111
Q ss_pred CCcccccccc--------CcccccccchhhhH-HHHh-ccC--CceEEEecccccCCCCCCcccccccceeeEEccC--C
Q 011364 213 GLIDWSQDFF--------EKPAFLTVSGQLNA-ETYA-TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--D 278 (487)
Q Consensus 213 ~~~~~~~~~~--------~~~~~L~~Spql~l-~ll~-~g~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~ 278 (487)
|... ....| ++..-|+.+.--.. ++++ .+. -|+|+||+|||+|.. +..|++||+|+++...+. +
T Consensus 309 g~~~-~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~ 386 (489)
T PRK04172 309 GGDT-GSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVS 386 (489)
T ss_pred cCCC-CCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEeCCCC
Confidence 1000 00111 22334544443333 4444 232 389999999999987 578899999999998764 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc
Q 011364 279 LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ 358 (487)
Q Consensus 279 ~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~ 358 (487)
+.+++.++++++..+ |+.
T Consensus 387 f~elkg~l~~ll~~l--------------------------------------------------Gi~------------ 404 (489)
T PRK04172 387 FRDLLGILKEFYKRL--------------------------------------------------GFE------------ 404 (489)
T ss_pred HHHHHHHHHHHHHHh--------------------------------------------------CCc------------
Confidence 334433333333221 000
Q ss_pred hHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecC---eeeeechhHhhchHHHHHHHHHHcCCCc
Q 011364 359 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNR 435 (487)
Q Consensus 359 ~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G---~~El~~G~~r~~~~~~~~~~~~~~g~~~ 435 (487)
...| -| ...||+.+ ....+++++| . ||++.++-. .+.++..|++.
T Consensus 405 --------------~~~~---~~-~~~p~~~P-------~~~~~i~~~g~~w~-eiG~~G~l~------Pevl~~~gi~~ 452 (489)
T PRK04172 405 --------------EVKF---RP-AYFPFTEP-------SVEVEVYHEGLGWV-ELGGAGIFR------PEVLEPLGIDV 452 (489)
T ss_pred --------------eEEE---cC-CcCCCCCC-------eEEEEEEECCCCeE-EEEeccccC------HHHHHHCCCCC
Confidence 0000 01 11144422 3456888877 4 888877766 34555556542
Q ss_pred ccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 436 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 436 ~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
|...|+||+|||+|+.+|++||||..
T Consensus 453 ---------------~v~~~el~le~l~m~~~~~~dir~l~ 478 (489)
T PRK04172 453 ---------------PVLAWGLGIERLAMLRLGLDDIRDLY 478 (489)
T ss_pred ---------------ceEEEEEcHHHHHHHHhCCcHHHHHH
Confidence 56789999999999999999999864
No 62
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=99.35 E-value=7e-12 Score=129.64 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=52.0
Q ss_pred cCccccccccCCCCceEEEEEEecC-eeeeechhHhhchHHHHHHHHHHcCCCcccH-HHHHHHHhcCCCCccceeccHH
Q 011364 383 EIKAFYMRQNDDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSY-WWYLDLRHYGSVPHAGFGLGFE 460 (487)
Q Consensus 383 ~~~pf~~~~~~~~~~~~~fdl~~~G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~-~~yl~~~~~G~pP~~G~giGid 460 (487)
..-||+.+ +...|+.++| +-||+|+++-. .+.++..|++++.+ +| .||||+|
T Consensus 270 s~fPfteP-------s~evdi~~~g~WiEi~gcG~v~------p~vl~~~g~~~~~~~g~-------------AfGiGle 323 (460)
T TIGR00469 270 AYFPFTAP-------SWEIEIWFKDEWLELCGCGIIR------HDILLRAGVHPSETIGW-------------AFGLGLD 323 (460)
T ss_pred ccCCCCCc-------ceEEEEEECCeeEEEeeeccCc------HHHHHHcCCCccceEEE-------------EEEecHH
Confidence 44577754 4668888888 23999999887 67788888886532 22 5899999
Q ss_pred HHHHHHcCCCCcccc
Q 011364 461 RLVQFATGVENIRDA 475 (487)
Q Consensus 461 RL~m~l~g~~~Irdv 475 (487)
||+|++.|+++||..
T Consensus 324 RlaMl~~gi~DiR~~ 338 (460)
T TIGR00469 324 RIAMLLFDIPDIRLF 338 (460)
T ss_pred HHHHHHcCccHHHHH
Confidence 999999999999964
No 63
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.27 E-value=8e-11 Score=117.84 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccC-CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASD-CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~-~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
..+.+.+|++|...||.|+.||.+.+.. + | ...+.+.+|++... .+.-+......|++
T Consensus 75 ~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~------f--d~l~~~~~hpar~~-------------~d~~~l~d~~vLRt 133 (294)
T TIGR00468 75 TRVIDEIRDIFLGLGFTEEKGPEVETDFWN------F--DALNIPQDHPARDM-------------QDTFYIKDRLLLRT 133 (294)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceeccHHH------H--HHhCCCCCCcchhh-------------ccceeecCCcceec
Confidence 3577789999999999999999998751 1 1 11111111111100 00001112234555
Q ss_pred chhhhH-HHHhccC---CceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHH
Q 011364 231 SGQLNA-ETYATAL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYL 290 (487)
Q Consensus 231 Spql~l-~ll~~g~---~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li 290 (487)
|----+ +.+.... -|+|+||+|||++.. +.+|+|||+||+.-+.. .|+.++...+|.++
T Consensus 134 sl~p~ll~~l~~N~~~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll 198 (294)
T TIGR00468 134 HTTAVQLRTMEENEKPPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFL 198 (294)
T ss_pred ccHHHHHHHHHhcCCCCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHH
Confidence 544443 5555554 489999999999876 57999999999987543 24555555444444
No 64
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.01 E-value=1.4e-08 Score=100.21 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCE-------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
.+.|..+.+.+++.|.+.||.||.||++...+.- ...+.|.+.+.+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~--------------------------- 54 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKG--------------------------- 54 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCC---------------------------
Confidence 3578899999999999999999999999986431 122344432211
Q ss_pred ccCcccccccchhhhH-HHHhc------cCCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 221 FFEKPAFLTVSGQLNA-ETYAT------ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 221 ~~~~~~~L~~Spql~l-~ll~~------g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+.|+.-..... ++++. .--|+|++++|||+|.. ...|.-||+|+++|.-..+
T Consensus 55 --g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 55 --GRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred --CCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 23333332222222 33332 22389999999999987 4678899999999987653
No 65
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.98 E-value=2.3e-09 Score=110.29 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=40.4
Q ss_pred CceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHHH
Q 011364 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (487)
Q Consensus 244 ~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~ 293 (487)
-|+|+||+|||+|...+.+|+++|+|+|.-.+.. ++.|++..++.|++++
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4899999999999643679999999999877754 5777777777776665
No 66
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.98 E-value=1.4e-08 Score=97.51 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=75.0
Q ss_pred HHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc--cccccc
Q 011364 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK--PAFLTV 230 (487)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~ 230 (487)
++.+.+|++|...||.||.|+.+++.... .+.+......+ ...+ + +.-.... -.+|++
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~--~~~~~~~~~~~---------~~~~-----~----~~v~l~NP~~~~LR~ 64 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYN--FDALNIPQDHP---------ARDM-----Q----DTFYINDPARLLLRT 64 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchh--hhhcCCCCCCc---------cccc-----C----ceEEECCCceEEEec
Confidence 46678999999999999999999876211 01111100000 0000 0 0000011 134555
Q ss_pred chhhhH-HHHhc--cCCceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHH
Q 011364 231 SGQLNA-ETYAT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (487)
Q Consensus 231 Spql~l-~ll~~--g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (487)
|-=--+ +.++. .--|+||||+|||+++. +..|+|||+||++..++. |+.+++..+|.++..
T Consensus 65 sLlp~LL~~l~~N~~~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~ 130 (218)
T cd00496 65 HTSAVQARALAKLKPPIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKE 130 (218)
T ss_pred cCcHHHHHHHHhcCCCeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 544333 55554 45699999999999876 568899999999999986 777887777777753
No 67
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.94 E-value=1.1e-08 Score=80.55 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=61.0
Q ss_pred EEEEEEEeee-ecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 011364 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 32 V~v~GwV~~i-R~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~ 110 (487)
|+|+|||.++ |..+++.|+.|+|++| ++||++.... ....... |+.|++|.|+|++...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~~-~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNEE-YERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETHH-HHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccHH-hhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 7779999999999995 6999999721 1222455 9999999999999998654 5999999998
Q ss_pred EE
Q 011364 111 LV 112 (487)
Q Consensus 111 vl 112 (487)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
No 68
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.70 E-value=2.1e-07 Score=97.40 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
-.-.+.+..+.+.+++.|.++||.||.||++...+. +. ..+.|.+.+.+
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--------------------- 69 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG--------------------- 69 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC---------------------
Confidence 345778889999999999999999999999977431 00 01233332211
Q ss_pred ccccccccCcccccccc--hhhhHHHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 215 IDWSQDFFEKPAFLTVS--GQLNAETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~S--pql~l~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+.|+.- +++. ++++.. --|+|++++|||+|.. ...|.-||+|+++|....+
T Consensus 70 --------g~~l~LRpD~T~~ia-R~~~~~~~~~~~p~r~~y~g~vfR~e~~-~~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 70 --------GRSLTLRPEGTAPVA-RAVIENKLLLPKPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred --------CCEEeecCCCcHHHH-HHHHhcccccCCCeEEEEEcCeecCCCC-CCCcccceEEcCeeeeCCC
Confidence 233333222 2222 333321 1489999999999987 4456699999999987654
No 69
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=7.6e-09 Score=102.21 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCC---C----------CCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---P----------VDAIPKT 210 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~----------~~~~~~~ 210 (487)
+.-.+++|+ .+|++|-+.||.|+.|.-.+.+.-...-.+|+++.|.++..|+... | ++.++.+
T Consensus 211 lHPLmKvR~----eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~v 286 (483)
T KOG2784|consen 211 LHPLMKVRE----EFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAV 286 (483)
T ss_pred cchHHHHHH----HHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHH
Confidence 445677665 5799999999999999999988777766777766666666555322 2 2223334
Q ss_pred CC-CCccccccccCccccc-------------ccchhhhHHHHhccC--CceEEEecccccCCCCCCcccccccceeeEE
Q 011364 211 KD-GLIDWSQDFFEKPAFL-------------TVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPEL 274 (487)
Q Consensus 211 ~~-~~~~~~~~~~~~~~~L-------------~~Spql~l~ll~~g~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~ 274 (487)
|+ |++. +.-|+.+|-| ++|....-+|.-.|| .|+|.|.+|||||.. +.+||.||.|+|.-.
T Consensus 287 H~~G~yg--s~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQVEGvi 363 (483)
T KOG2784|consen 287 HEQGGYG--SIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQVEGVI 363 (483)
T ss_pred HhcCCcC--CcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhcccc-chHHHHHHhhhceee
Confidence 43 2222 1223333322 233333224445555 489999999999999 699999999999888
Q ss_pred ccC--CHHHHHHHHHHHHHHH
Q 011364 275 AFA--DLKDDMACATAYLQYV 293 (487)
Q Consensus 275 ~~~--~~~~lm~~~e~li~~~ 293 (487)
+.. ++.++|...++++..+
T Consensus 364 ad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 364 ADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred ecCCCcHHHHHHHHHHHHhcc
Confidence 865 5889998888776543
No 70
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.47 E-value=4.7e-07 Score=83.68 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhh-cCCeEEEeCCeeeccCCC-CC-------CCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 011364 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDCE-GA-------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~~~e-g~-------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
++.+|.+.+++.+. +.||.||.||+|.+...- .. .+.|.++..+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~--------------------------- 53 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRG--------------------------- 53 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETT---------------------------
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecc---------------------------
Confidence 47889999999999 999999999999985431 11 1223221110
Q ss_pred ccCcccccccchhhhH-HHHhc-------cCC-ceEEEecccccCC--CCCCcccccccceeeEEccCCHHHHHHHHHHH
Q 011364 221 FFEKPAFLTVSGQLNA-ETYAT-------ALS-NVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAY 289 (487)
Q Consensus 221 ~~~~~~~L~~Spql~l-~ll~~-------g~~-kvfeI~~~FR~E~--~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~l 289 (487)
+...+|+.+.+... .++.. .+. |+|++|+|||+|. ..+-..+-||+|.|++....+ ++..+..+++
T Consensus 54 --~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~ 130 (173)
T PF00587_consen 54 --DEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEEL 130 (173)
T ss_dssp --TEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHH
T ss_pred --cccEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHH
Confidence 13346666665554 33221 122 7999999999993 224567789999999987777 7777777777
Q ss_pred HHHHHHH
Q 011364 290 LQYVVRY 296 (487)
Q Consensus 290 i~~~~~~ 296 (487)
+..+..-
T Consensus 131 ~~~~~~i 137 (173)
T PF00587_consen 131 LELYKEI 137 (173)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 71
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.5e-06 Score=87.04 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=107.5
Q ss_pred ccc-CcccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHh
Q 011364 220 DFF-EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 297 (487)
Q Consensus 220 ~~~-~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~ 297 (487)
.|| +....|+...-.|. +++..|.+.--..|-|||...+ +++|.|=|.|+|.-.-+.- +++ +...
T Consensus 126 tyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdei-dsthypvfhq~eg~~~~s~-~~l-----------~~~~ 192 (436)
T KOG2783|consen 126 TYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEI-DSTHYPVFHQMEGVRLWSK-DEL-----------FGKK 192 (436)
T ss_pred ceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccc-cccccceeccccceeEEec-chh-----------hccc
Confidence 344 55666777777776 7888899999999999999999 6899999999998776542 110 0000
Q ss_pred hccCccccccc-cccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhcccc--Ccc
Q 011364 298 LDNCKEDMDFF-NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG--GCP 374 (487)
Q Consensus 298 ~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~--~~p 374 (487)
. +.+.. ..|...+ . +.....+......||.+++..+-.. ..+. |....++ -.-
T Consensus 193 ~-----d~~~ve~~~~~s~----~-~~~~~~kq~~~t~e~~~~~~~~lk~-------------~l~~-L~~~Lf~~~~~~ 248 (436)
T KOG2783|consen 193 P-----DGKNVAELFSGSS----A-TLRSPNKQEKHTLEATKLAEQHLKQ-------------TLEG-LCDELFGKEVEY 248 (436)
T ss_pred c-----cccceeccccccc----c-ccccccccccchHHHHHHHHHHHHH-------------HHHH-HHHHhccchhhe
Confidence 0 11100 0000000 0 0011112223345666665432110 0000 0000110 011
Q ss_pred EEEEecCCcCccccccccCCCCceEEEEEEecC-eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCcc
Q 011364 375 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHA 453 (487)
Q Consensus 375 ~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~ 453 (487)
=||..|= ||+.+ +...|+++.| +-|+.|++.-+ ...++..|+. +...|
T Consensus 249 rwV~~yf----pft~p-------s~eleI~~~~~wlevlgcgvi~------~~il~~ag~~-~~igw------------- 297 (436)
T KOG2783|consen 249 RWVDAYF----PFTHP-------SWELEIYFKGEWLEVLGCGVMR------QRLLKRAGLN-NYIGW------------- 297 (436)
T ss_pred eheeeEc----ccCCC-------CeEEEEEecCCcHhhhccchhH------HHHHhhcccc-ceeee-------------
Confidence 1333221 56543 3456777777 23999998777 5566777775 44456
Q ss_pred ceeccHHHHHHHHcCCCCccc
Q 011364 454 GFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 454 G~giGidRL~m~l~g~~~Ird 474 (487)
.||||+|||.|+|.++++||-
T Consensus 298 afglgLerLAMll~~IpDiRl 318 (436)
T KOG2783|consen 298 AFGLGLERLAMLLFDIPDIRL 318 (436)
T ss_pred eeeccHHHHHHHHhcCcchhe
Confidence 689999999999999999994
No 72
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.23 E-value=2.5e-06 Score=84.16 Aligned_cols=122 Identities=19% Similarity=0.133 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-C---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.+++.+|.+.+++.+.+.||.||.||.|.+.+. . | ..+.|.+++...
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~----------------------- 87 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGL----------------------- 87 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCC-----------------------
Confidence 5678889999999999999999999999988542 1 1 113444432110
Q ss_pred cccccCcccccccchhhhH-HHH----hcc--CC-ceEEEecccccCCCCC--CcccccccceeeEEccCCHHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETY----ATA--LS-NVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll----~~g--~~-kvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
.=-+.+++|....+..+ .+. .+. +. |+|+|++|||+|...+ --=.-||+|.|.+..+++.++..+..+
T Consensus 88 --~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~ 165 (261)
T cd00778 88 --EELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVL 165 (261)
T ss_pred --cccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHH
Confidence 00012345555544443 222 111 22 7899999999997621 112349999999999999998888888
Q ss_pred HHHHHH
Q 011364 288 AYLQYV 293 (487)
Q Consensus 288 ~li~~~ 293 (487)
+++...
T Consensus 166 ~~~~~~ 171 (261)
T cd00778 166 QILDLY 171 (261)
T ss_pred HHHHHH
Confidence 876554
No 73
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.8e-05 Score=82.76 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCC----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
-.-...+..|...+|+-+.+.||.||.||++-...- |.. -+.+..++..
T Consensus 15 p~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkg--------------------- 73 (429)
T COG0124 15 PEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKG--------------------- 73 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCC---------------------
Confidence 345778889999999999999999999999887432 110 0111111110
Q ss_pred ccccccccCcccccccchhhh--H-HHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC----HHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKD 281 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~--l-~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~ 281 (487)
++.+.|+ |++= . |+++.. --|.|.++||||.|.....|- =||+|+++|.-..+ --|
T Consensus 74 --------gr~laLR--pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAE 142 (429)
T COG0124 74 --------GRSLALR--PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAE 142 (429)
T ss_pred --------CCEEEec--ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHH
Confidence 2333332 3322 2 444422 238999999999998866665 69999999998764 236
Q ss_pred HHHHHHHHHHHH
Q 011364 282 DMACATAYLQYV 293 (487)
Q Consensus 282 lm~~~e~li~~~ 293 (487)
++.++-+++..+
T Consensus 143 vi~l~~~~l~~l 154 (429)
T COG0124 143 VIALAVEILEAL 154 (429)
T ss_pred HHHHHHHHHHHc
Confidence 777777766655
No 74
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.15 E-value=9.1e-06 Score=78.55 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 011364 149 RVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (487)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
+++.+|.+.+++.|.+.||.||.||.|..... .+.. +.|.+++.+. .
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 57 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGR-------------------------E 57 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcc-------------------------c
Confidence 56788999999999999999999999998642 1101 1222211000 0
Q ss_pred ccCcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCC--CcccccccceeeEEccCC
Q 011364 221 FFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 221 ~~~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~ 278 (487)
--+..++|+....... ++.+. .+ -|+|++++|||+|.... -.-.-||+|.|++.-..+
T Consensus 58 ~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 58 LRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccCCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 0012334444443333 33322 12 27999999999997631 223469999999986544
No 75
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.02 E-value=5.2e-05 Score=75.00 Aligned_cols=121 Identities=20% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCC--------CCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA--------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~--------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.+++.+|.+.+++-+.+.||.||.||.|..... .+. .+.|.+++... +
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~-------------------~--- 88 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGD-------------------E--- 88 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCC-------------------C---
Confidence 4567888999999999999999999999988542 111 12233321110 0
Q ss_pred cccccCcccccccchhhhH-HHHhc------cCC-ceEEEecccccCCCCCCc---ccccccceeeEEccCCHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~------g~~-kvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+ -+.+++|+...+... .+... .+. |+|++++|||+|.. +.+ =.-||+|.|.+....+.++..+..
T Consensus 89 --~-~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~ 164 (264)
T cd00772 89 --E-LEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADEEF 164 (264)
T ss_pred --c-cCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHHHH
Confidence 0 013445655555433 22221 233 89999999999953 222 235999999998768888888777
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
+.++...
T Consensus 165 ~~~~~~~ 171 (264)
T cd00772 165 LNMLSAY 171 (264)
T ss_pred HHHHHHH
Confidence 7777543
No 76
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.98 E-value=2.6e-05 Score=76.78 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.+++.+|.+.+++.|.+.||.||.||+|..... . | ..+.|.+++..
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~------------------------- 84 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRH------------------------- 84 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCC-------------------------
Confidence 5677889999999999999999999999988432 0 1 11233332110
Q ss_pred ccccCcccccccchhhhH-----HHHhc--cCC-ceEEEecccccCCCCCCc---ccccccceeeEEccCCHHHHHHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNA-----ETYAT--ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l-----~ll~~--g~~-kvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
+.+++|+...+-.+ +.+.+ .+. |+|++++|||+|.. +.+ =.-||+|.|.+....+-.+..+..+
T Consensus 85 ----~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~-~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~ 159 (255)
T cd00779 85 ----GKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR-PRFGLMRGREFLMKDAYSFDIDEESLEETYE 159 (255)
T ss_pred ----CCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCC-CCCceeeeeeEeHhhheeccCCHHHHHHHHH
Confidence 23445655433322 22222 233 89999999999932 111 2359999999998777666666555
Q ss_pred HHHHH
Q 011364 288 AYLQY 292 (487)
Q Consensus 288 ~li~~ 292 (487)
+++..
T Consensus 160 ~i~~~ 164 (255)
T cd00779 160 KMYQA 164 (255)
T ss_pred HHHHH
Confidence 55543
No 77
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.97 E-value=3.1e-05 Score=81.48 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
..-.+.+..+...+|+.|.+.||.||.||++...+- +. ..+.|.+.+..
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--------------------- 73 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKG--------------------- 73 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCC---------------------
Confidence 446777888999999999999999999999976431 11 12233332110
Q ss_pred ccccccccCccccccc--chhhhHHHHhc---cCCceEEEecccccCCCCCCcccccccceeeEEccCCH----HHHHHH
Q 011364 215 IDWSQDFFEKPAFLTV--SGQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL----KDDMAC 285 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~--Spql~l~ll~~---g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~----~~lm~~ 285 (487)
|+.+.|+. .+++. +.++. .--|+|++++|||+|.. ...|.-||+|+++|.-..+- .|++.+
T Consensus 74 --------g~~l~LRpd~T~~~a-r~~~~~~~~p~r~~~~g~vfR~e~~-~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~ 143 (412)
T PRK00037 74 --------GRSLTLRPEGTAPVV-RAVIEHKLQPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGSDSPLADAEVIAL 143 (412)
T ss_pred --------CCEEEecCCCcHHHH-HHHHhCCCCCeEEEEEcCccccCCC-CCCcccceEEcCeeeeCCCCcchhHHHHHH
Confidence 22222322 22222 33322 23489999999999987 45677999999999865542 345555
Q ss_pred HHHHHH
Q 011364 286 ATAYLQ 291 (487)
Q Consensus 286 ~e~li~ 291 (487)
+.+++.
T Consensus 144 ~~~~l~ 149 (412)
T PRK00037 144 AADILK 149 (412)
T ss_pred HHHHHH
Confidence 444443
No 78
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00078 Score=64.27 Aligned_cols=69 Identities=20% Similarity=0.134 Sum_probs=53.0
Q ss_pred CeeeeechhHhhchHHHHHHHHHHcCC-CcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccc
Q 011364 407 RIGELIGGSQREERLEYLEGRLDELKL-NRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 477 (487)
Q Consensus 407 G~~El~~G~~r~~~~~~~~~~~~~~g~-~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~ 477 (487)
++ ||.+-+.|. +.+.+.++++-.|. |...++|-=..+.--+|-+-|-|||=.||+|+|+..++|-+|..
T Consensus 246 af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 246 AF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred hh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeee
Confidence 56 888888887 55666666665553 23345776666666689999999999999999999999999964
No 79
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.90 E-value=4.9e-05 Score=82.94 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC--------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE--------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e--------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-.-.+++.+|.+.+|+.|.+.||.||.||+|.+..-. -+.+.|.+++..
T Consensus 44 P~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~----------------------- 100 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRK----------------------- 100 (568)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCC-----------------------
Confidence 3467788999999999999999999999999984321 112345443211
Q ss_pred ccccccCcccccccchh-----hhHHHHhcc--CC-ceEEEecccccCC-CCCC-cccccccceeeEEccCCHHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQ-----LNAETYATA--LS-NVYTFGPTFRAEN-SNTS-RHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spq-----l~l~ll~~g--~~-kvfeI~~~FR~E~-~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+.+++|+...| ++.+.+.+. +. |+|||++|||+|. .... -=.-||+|.|.|.-..+..+.....
T Consensus 101 ------~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~ 174 (568)
T TIGR00409 101 ------GREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATY 174 (568)
T ss_pred ------CCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHH
Confidence 23445554322 222222222 33 8999999999993 2111 0235999999999877766665556
Q ss_pred HHHH---HHHHHHh
Q 011364 287 TAYL---QYVVRYI 297 (487)
Q Consensus 287 e~li---~~~~~~~ 297 (487)
+.++ ..+++.+
T Consensus 175 ~~~~~~y~~if~~L 188 (568)
T TIGR00409 175 QKMYQAYSNIFSRL 188 (568)
T ss_pred HHHHHHHHHHHHHh
Confidence 6554 5555554
No 80
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.86 E-value=2.1e-05 Score=77.28 Aligned_cols=97 Identities=25% Similarity=0.233 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhhcCC--eEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 147 VARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~g--F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
-.+++.+|.+.+|+.|...| |.||+||+|.+. +.|.+. ..+. +--+.
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~-~g~~------------------------d~~~~ 79 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTS-IGPV------------------------ESGGN 79 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheee-eccc------------------------CCCCc
Confidence 56788999999999998885 999999999996 456542 1100 00012
Q ss_pred cccccc--chh---hhHHHHhcc---CC-ceEEEecccccCCCCCC---cccccccceeeEEc
Q 011364 225 PAFLTV--SGQ---LNAETYATA---LS-NVYTFGPTFRAENSNTS---RHLAEFWMIEPELA 275 (487)
Q Consensus 225 ~~~L~~--Spq---l~l~ll~~g---~~-kvfeI~~~FR~E~~~t~---rHl~EFtmlE~e~~ 275 (487)
..+|+. .|. .+++..... +. |+||||+|||+|.+ .. -=.-||||.|+|.-
T Consensus 80 ~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~-~~~gl~R~ReF~q~d~~~f 141 (254)
T cd00774 80 LGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEIS-PRNGLFRVREFTQAEIEFF 141 (254)
T ss_pred ccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccC-cccceeeeccchhhheeee
Confidence 233332 221 223433322 22 89999999999975 22 24469999999974
No 81
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.83 E-value=0.00013 Score=79.96 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC--------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE--------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e--------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-.-.+++.+|.+.+|+.|.+.||.||.||+|.+..-- -..+.|.+++..
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~----------------------- 100 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRH----------------------- 100 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCC-----------------------
Confidence 3467789999999999999999999999999974320 112344442211
Q ss_pred ccccccCcccccccchhhhH-HHHh----c--cC-CceEEEecccccCCCCCCc---ccccccceeeEEccCCHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYA----T--AL-SNVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMAC 285 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~----~--g~-~kvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~ 285 (487)
+++++|+...+-.. .++. + .+ -|+|||++|||.|.. ..+ =.-||+|.|.|....+-.+....
T Consensus 101 ------~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~r-p~~Gl~R~reF~q~d~~~f~~~~~~a~~~ 173 (565)
T PRK09194 101 ------GRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIR-PRFGLMRGREFIMKDAYSFHADEESLDET 173 (565)
T ss_pred ------CCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCC-CCCcccccccEEEeeEEEEcCChHHHHHH
Confidence 34455554333222 2221 1 12 289999999999932 111 23599999999977665555544
Q ss_pred HHHHH---HHHHHHh
Q 011364 286 ATAYL---QYVVRYI 297 (487)
Q Consensus 286 ~e~li---~~~~~~~ 297 (487)
.++++ ..+++.+
T Consensus 174 ~~~~~~~~~~i~~~l 188 (565)
T PRK09194 174 YDAMYQAYSRIFDRL 188 (565)
T ss_pred HHHHHHHHHHHHHHh
Confidence 44444 4455443
No 82
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.78 E-value=8.1e-05 Score=74.94 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.+++..|.+.+++.+.+.||.||.||+|.....- |. .+.|.++. .
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~--------------------~------ 82 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEE--------------------E------ 82 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEecc--------------------C------
Confidence 56777889999999999999999999999885421 11 12222210 0
Q ss_pred ccccCcccccccchhhhH-HHHhc------cCC-ceEEEecccccCCCCCCc---ccccccceeeEEccCCHHHHHHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l-~ll~~------g~~-kvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
+++++|+...+-.. ++.+. .+. |+|++++|||+|...+.+ =.-||+|.|++.- +.-++..+.++
T Consensus 83 ----~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~~e~~~~e~~ 157 (298)
T cd00771 83 ----DEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CTPDQIKEEIK 157 (298)
T ss_pred ----CceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eCCcchHHHHH
Confidence 12344444333332 33222 233 899999999999762111 1259999999985 43344444444
Q ss_pred HHHHHH
Q 011364 288 AYLQYV 293 (487)
Q Consensus 288 ~li~~~ 293 (487)
+++..+
T Consensus 158 e~l~~~ 163 (298)
T cd00771 158 GVLDLI 163 (298)
T ss_pred HHHHHH
Confidence 444433
No 83
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.76 E-value=9.2e-05 Score=78.06 Aligned_cols=119 Identities=19% Similarity=0.326 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCeEEEeCCeeeccCC-CCCCC--CceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 011364 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASDC-EGAGE--QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~~~-eg~~~--~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
-...++..+|++.+++.+. +.||.||.||.|.+... ++.+. -|. .+
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~------------------------------~~ 216 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFE------------------------------ED 216 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccch------------------------------hh
Confidence 3567788899999999998 99999999999998543 12211 110 01
Q ss_pred cc---CcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCC------CCcccccccceeeEEccCCHHHHH
Q 011364 221 FF---EKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 221 ~~---~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~lm 283 (487)
.| +.+.||....|..+ -++..- + =|+|++++|||+|... +--=.-||+|.|.+ .|+.-++..
T Consensus 217 ly~i~~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~ 295 (425)
T PRK05431 217 LYKIEDDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSY 295 (425)
T ss_pred ceEecCCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHH
Confidence 11 34567777777666 333322 2 2799999999999641 10123499999998 578778887
Q ss_pred HHHHHHHHHHH
Q 011364 284 ACATAYLQYVV 294 (487)
Q Consensus 284 ~~~e~li~~~~ 294 (487)
+..++++...-
T Consensus 296 ~~~~~~l~~~~ 306 (425)
T PRK05431 296 AELEELTANAE 306 (425)
T ss_pred HHHHHHHHHHH
Confidence 77777776553
No 84
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.76 E-value=0.00011 Score=77.45 Aligned_cols=117 Identities=16% Similarity=0.268 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCC-------CceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGE-------QFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~-------~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...++..++++.+++.+.+.||.||.||.|.+... ++.+. .|.++
T Consensus 170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~-------------------------- 223 (418)
T TIGR00414 170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE-------------------------- 223 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--------------------------
Confidence 367888999999999999999999999999998653 22221 11110
Q ss_pred ccccccCcccccccchhhhHH-HHhcc------CC-ceEEEecccccCCCC------CCcccccccceeeEEccCCHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATA------LS-NVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g------~~-kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~l 282 (487)
+.+.+|....|..+- +...- +. |+|++++|||+|... +--=.-||+|.|.+ .|++-++.
T Consensus 224 ------~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~~e~s 296 (418)
T TIGR00414 224 ------DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCKPEES 296 (418)
T ss_pred ------CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcCHHHH
Confidence 234567766666552 22221 22 799999999999631 11123499999994 58888887
Q ss_pred HHHHHHHHHHHH
Q 011364 283 MACATAYLQYVV 294 (487)
Q Consensus 283 m~~~e~li~~~~ 294 (487)
.+..++++...-
T Consensus 297 ~~~~~~~~~~~~ 308 (418)
T TIGR00414 297 AEELEEMTSDAE 308 (418)
T ss_pred HHHHHHHHHHHH
Confidence 777777766553
No 85
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.73 E-value=0.00017 Score=72.02 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
.-.+.+..+.+.+++.|...||-||.||++.....- ...+.|.+.+..
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~----------------------------- 67 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEK----------------------------- 67 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCC-----------------------------
Confidence 356678889999999999999999999999865331 112334432211
Q ss_pred Ccccccccchhhh--H-HHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC-HHHHHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQY 292 (487)
Q Consensus 223 ~~~~~L~~Spql~--l-~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~ 292 (487)
|+.+-| -|++= . |+++.. --|.|++++|||.|. .||+|+.+|.-+.+ ..|++.++-+.++.
T Consensus 68 g~~l~L--RpD~T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~ 138 (281)
T PRK12293 68 NHQISL--RADSTLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEE 138 (281)
T ss_pred CCEEEE--CCcCCHHHHHHHHHhcccCCCceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHH
Confidence 222222 22222 1 333321 138999999999873 59999999998764 66666666665555
Q ss_pred H
Q 011364 293 V 293 (487)
Q Consensus 293 ~ 293 (487)
+
T Consensus 139 l 139 (281)
T PRK12293 139 L 139 (281)
T ss_pred c
Confidence 4
No 86
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.72 E-value=0.0001 Score=74.16 Aligned_cols=116 Identities=18% Similarity=0.305 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...+++.+|.+.+++.+.+.||.||.||.|.+..- ++.+ +.|.++
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~-------------------------- 102 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE-------------------------- 102 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--------------------------
Confidence 346788899999999999999999999999998643 1111 122210
Q ss_pred ccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCC------CCCcccccccceeeEEccCCHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~~~~l 282 (487)
+.+++|....+..+ .+...- + =|+|++++|||+|.. .+---.-||+|.|.+. |+.-++.
T Consensus 103 ------~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~ 175 (297)
T cd00770 103 ------GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEES 175 (297)
T ss_pred ------CCCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHH
Confidence 13456666666665 333321 2 279999999999965 1222346999999974 6655666
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
.+..++++...
T Consensus 176 ~~~~~~~l~~~ 186 (297)
T cd00770 176 WEELEELISNA 186 (297)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 87
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.70 E-value=0.00024 Score=77.95 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---CCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
+-.-.+++..|.+.+|+.+...||.||.||++....-- |.. +.|.+++.
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~----------------------- 252 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTEL----------------------- 252 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccC-----------------------
Confidence 34567788999999999999999999999999975320 111 12222110
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------CC-ceEEEecccccCCCCCC-----cccccccceeeEEccCCHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------LS-NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~~-kvfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~~~~~~~~l 282 (487)
=++.++|+....... ++.+.. +. |+|++|+|||+|.. +. | .-||+|.|+|.-. ..++.
T Consensus 253 ------~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R-~reF~q~~~~~~~-~~~~~ 323 (563)
T TIGR00418 253 ------DNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQS-GELHGLMR-VRGFTQDDAHIFC-TEDQI 323 (563)
T ss_pred ------CCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCC-cCCcCccc-ccceEEeeeEEEc-CHHHH
Confidence 034455655554443 443322 22 89999999999955 32 3 2489999999743 34555
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
....++++..+
T Consensus 324 ~~e~~~~i~~~ 334 (563)
T TIGR00418 324 KEEFKNQFRLI 334 (563)
T ss_pred HHHHHHHHHHH
Confidence 55544444433
No 88
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.65 E-value=0.00025 Score=77.99 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++..|.+.+++.+.+.||.||.||+|....- .|. .+.|.+++..
T Consensus 202 ~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~---------------------- 259 (575)
T PRK12305 202 HPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEID---------------------- 259 (575)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccC----------------------
Confidence 4466788999999999999999999999999998532 011 1223221100
Q ss_pred cccccccCcccccccchhhh-HHHHhc------cCC-ceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLN-AETYAT------ALS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~-l~ll~~------g~~-kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
++.+.|+.-..-. -++.+. .+. |.|++|+|||+|.. +.+| .-||+|.|++. |++.+...
T Consensus 260 -------~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~~~~Gl~R~reF~q~~~~i-f~~~~~~~ 330 (575)
T PRK12305 260 -------EEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKS-GVLHGLTRVRGFTQDDAHI-FCTPDQIE 330 (575)
T ss_pred -------CceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCC-CCCcCcccccCeEEcceEE-EeCHHHHH
Confidence 2333343222222 233222 233 89999999999976 2222 25999999995 77766666
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+.+.+++..+..-+
T Consensus 331 ~e~~e~i~l~~~~~ 344 (575)
T PRK12305 331 DEILKVLDFVLELL 344 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665554444
No 89
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.62 E-value=0.00016 Score=77.49 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
.-.+++..|.+.+++.|.+.||.||.||.|.+..- + | ..+.|.+++...
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~---------------------- 99 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGG---------------------- 99 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCC----------------------
Confidence 35788899999999999999999999999987532 1 1 223455543210
Q ss_pred ccccccCcccccccchhhhH-----HHHhcc--CC-ceEEEecccccCCCCCC--cccccccceeeEEccCCHHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-----ETYATA--LS-NVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-----~ll~~g--~~-kvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
.=.+.+++|+...+-.. +.+.+. +. |+||+++|||+|.. ++ -=.-||+|.|.+..+++.++..+..
T Consensus 100 ---~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~ 175 (477)
T PRK08661 100 ---EKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEET 175 (477)
T ss_pred ---CccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHH
Confidence 00123455655554333 222221 22 79999999999976 33 2346999999999999988887777
Q ss_pred HHHHHH
Q 011364 287 TAYLQY 292 (487)
Q Consensus 287 e~li~~ 292 (487)
++++..
T Consensus 176 ~~~l~~ 181 (477)
T PRK08661 176 LEMLEI 181 (477)
T ss_pred HHHHHH
Confidence 777653
No 90
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.61 E-value=0.00017 Score=77.17 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC------CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.+++..|.+.+++-+.+.||.||.||.|.+..- +| ..+.|.+++...
T Consensus 37 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~----------------------- 93 (472)
T TIGR00408 37 GFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGL----------------------- 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCC-----------------------
Confidence 4566899999999999999999999999987431 11 224555543221
Q ss_pred cccccCcccccccchhhhH-HHHhc----c--CC-ceEEEecccccCCCCC--CcccccccceeeEEccCCHHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYAT----A--LS-NVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~----g--~~-kvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
+=.+.+++|+...+-.. .+... . +. |+||+++|||+|...+ --=.-||+|.|.+..+++.++..+..+
T Consensus 94 --~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~ 171 (472)
T TIGR00408 94 --SKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVL 171 (472)
T ss_pred --CccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHH
Confidence 00123455555555443 22222 1 22 7999999999997621 012459999999988999888887777
Q ss_pred HHHHHH
Q 011364 288 AYLQYV 293 (487)
Q Consensus 288 ~li~~~ 293 (487)
+++...
T Consensus 172 ~~l~~y 177 (472)
T TIGR00408 172 RALDIY 177 (472)
T ss_pred HHHHHH
Confidence 776543
No 91
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.61 E-value=0.00035 Score=70.61 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.-.+.+..+.+.+++.|...||.||+||++..... +...+.|.+.+.+
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~------------------------- 61 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRS------------------------- 61 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecC-------------------------
Confidence 345778899999999999999999999999987431 2222444442211
Q ss_pred ccccCcccccccchhhhH-HHHhc-----cCCceEEEecccccCCCCCCcccccccceeeEEccCC-HH---HHHHHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNA-ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATA 288 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l-~ll~~-----g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~---~lm~~~e~ 288 (487)
|..+-|+.---.-. |+++. -..|+|++|+|||.+.. ...+.-||+|+.+|.-..+ .. |++.++-+
T Consensus 62 ----G~~l~LR~D~T~~iaR~~a~~~~~~~~~r~~y~g~vfR~~~~-~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e 136 (311)
T PF13393_consen 62 ----GRVLALRPDLTVPIARYVARNLNLPRPKRYYYIGPVFRYERP-GKGRPREFYQCGFEIIGSSSLEADAEVIKLADE 136 (311)
T ss_dssp ----SSEEEE-SSSHHHHHHHHHHCCGSSSSEEEEEEEEEEEEETT-TTTBESEEEEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred ----CcEeccCCCCcHHHHHHHHHhcCcCCCceEEEEcceeecccc-CCCCCceeEEEEEEEECCCCHHHHHHHHHHHHH
Confidence 22222221111111 44433 23589999999999976 3456689999999987764 33 66776666
Q ss_pred HHH
Q 011364 289 YLQ 291 (487)
Q Consensus 289 li~ 291 (487)
++.
T Consensus 137 ~l~ 139 (311)
T PF13393_consen 137 ILD 139 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 92
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.59 E-value=0.00029 Score=73.66 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.-.+.|..+.+.+++.|...||.||.||++..... +...+.|.+.+.+.
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~----------------------- 70 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLS----------------------- 70 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCC-----------------------
Confidence 345677889999999999999999999999975322 11123444432200
Q ss_pred cccccCccccccc--chhhhHHHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHHHHH
Q 011364 218 SQDFFEKPAFLTV--SGQLNAETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~--Spql~l~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~ 285 (487)
|+.+-|+. .+++. |+++.. --|+|++++|||.|.. ..-+.-||+|+.+|.-+.+ . -|++.+
T Consensus 71 -----g~~l~LRpD~T~~ia-R~~a~~~~~~~~p~r~~y~g~vfR~~~~-~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l 143 (391)
T PRK12292 71 -----GRTLGLRPDMTAQIA-RIAATRLANRPGPLRLCYAGNVFRAQER-GLGRSREFLQSGVELIGDAGLEADAEVILL 143 (391)
T ss_pred -----CCEEEECCCCcHHHH-HHHHHhccCCCCCeEEEeeceeeecCCC-cCCCccchhccceEEeCCCCchHHHHHHHH
Confidence 22222221 12221 333322 2389999999999976 3455689999999987654 2 366666
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
+-+.+..+
T Consensus 144 ~~~~l~~l 151 (391)
T PRK12292 144 LLEALKAL 151 (391)
T ss_pred HHHHHHHc
Confidence 66666554
No 93
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.59 E-value=0.00034 Score=74.30 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
.-.+++.+|.+.+|+-+.+.||.||.||.|.+..-- | ..+.|.+++..
T Consensus 45 ~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~------------------------ 100 (439)
T PRK12325 45 LGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRH------------------------ 100 (439)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCC------------------------
Confidence 357788999999999999999999999999985210 1 11344332111
Q ss_pred cccccCcccccccch-hh----hHHHHhc--cC-CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSG-QL----NAETYAT--AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~Sp-ql----~l~ll~~--g~-~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm~~ 285 (487)
+.++.|.... +. +...+.+ .+ =|+|||++|||+|.. + +| .-||+|-|+|....+.+++.+.
T Consensus 101 -----~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~ 173 (439)
T PRK12325 101 -----DREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHS 173 (439)
T ss_pred -----CCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHH
Confidence 2333454322 22 2222221 13 389999999999954 3 32 4699999999977888777776
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
.++++...
T Consensus 174 ~~~~~~~~ 181 (439)
T PRK12325 174 YNRMFVAY 181 (439)
T ss_pred HHHHHHHH
Confidence 66655444
No 94
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.58 E-value=0.00035 Score=77.75 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.+-.-.+++..|.+.+++.+...||.||.||++....- .| ..+.|.+++..
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~--------------------- 323 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESD--------------------- 323 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCC---------------------
Confidence 34466788999999999999999999999999987542 11 11234332110
Q ss_pred ccccccccCcccccccchhhh-HHHHhc------cCC-ceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLN-AETYAT------ALS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~-l~ll~~------g~~-kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (487)
++.+.|+....-. -++.+. .+. |+|++|+|||+|... ..| .-||||.|++. |..-+..
T Consensus 324 --------~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 324 --------GEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG-ALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred --------CcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC-CCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 2233333222211 133221 233 899999999999772 211 24999999997 6554444
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
.+.+.++|..+
T Consensus 394 ~~e~~eii~l~ 404 (638)
T PRK00413 394 EEEVKKVIDLI 404 (638)
T ss_pred HHHHHHHHHHH
Confidence 44434444433
No 95
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.58 E-value=0.00027 Score=71.65 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
.-.+.+..+.+.+++.|.+.||.||+||++..... +...+.|.+.+.+
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~-------------------------- 59 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL-------------------------- 59 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC--------------------------
Confidence 34677889999999999999999999999987432 1112234332211
Q ss_pred cccCccccccc--chhhhHHHHhc---c---CCceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHHHHHHH
Q 011364 220 DFFEKPAFLTV--SGQLNAETYAT---A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACAT 287 (487)
Q Consensus 220 ~~~~~~~~L~~--Spql~l~ll~~---g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~~e 287 (487)
|+.+.|+. .+++ .+.++. + --|+|++|+|||.|.. ..-+.-||+|+.+|.-..+ . -|++.++-
T Consensus 60 ---g~~l~LRpD~T~~i-aR~~~~~~~~~~~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~ 134 (314)
T TIGR00443 60 ---GRVLGLRPDMTTPI-ARAVSTRLRDRPLPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLI 134 (314)
T ss_pred ---CCEEeecCcCcHHH-HHHHHHhcccCCCCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHH
Confidence 22222221 2232 243332 2 2489999999999987 4567789999999986543 1 24555555
Q ss_pred HHHHH
Q 011364 288 AYLQY 292 (487)
Q Consensus 288 ~li~~ 292 (487)
+.+..
T Consensus 135 ~~l~~ 139 (314)
T TIGR00443 135 EALKA 139 (314)
T ss_pred HHHHH
Confidence 54443
No 96
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.53 E-value=0.00037 Score=77.53 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc----
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF---- 222 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 222 (487)
-.+++..|.+.+++.+.+.||.||.||+|....- |.-+- +. +.+. +.-|+
T Consensus 273 g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l------~~~sG-~~----------~~~~---------~emy~~d~~ 326 (639)
T PRK12444 273 GQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEL------WERSG-HW----------DHYK---------DNMYFSEVD 326 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHH------HhhcC-Ch----------hhhh---------hhcCeecCC
Confidence 4456777999999999999999999999998532 21110 00 0000 00111
Q ss_pred CcccccccchhhhH-HHHhccC-------CceEEEecccccCCCCC--C-cccccccceeeEEccCCHHHHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNT--S-RHLAEFWMIEPELAFADLKDDMACATAYLQ 291 (487)
Q Consensus 223 ~~~~~L~~Spql~l-~ll~~g~-------~kvfeI~~~FR~E~~~t--~-rHl~EFtmlE~e~~~~~~~~lm~~~e~li~ 291 (487)
++.++|+...+... ++..... -|+|++++|||.|.+.. . -=.-||+|.|.+ .|++-++..+..++++.
T Consensus 327 ~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~ 405 (639)
T PRK12444 327 NKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMA 405 (639)
T ss_pred CcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHH
Confidence 23445666555554 4433221 28999999999997521 1 012489999999 68887777776666665
Q ss_pred HHHH
Q 011364 292 YVVR 295 (487)
Q Consensus 292 ~~~~ 295 (487)
.+..
T Consensus 406 ~~~~ 409 (639)
T PRK12444 406 QIDY 409 (639)
T ss_pred HHHH
Confidence 5433
No 97
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.49 E-value=0.00039 Score=75.40 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-CCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-g~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.++|..|.+.+|+.+.+.||.||.||.+....-- ..+ +.|.++ . +
T Consensus 164 lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~-~-------------------~--- 220 (545)
T PRK14799 164 HPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN-M-------------------E--- 220 (545)
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceee-c-------------------c---
Confidence 45678899999999999999999999999998764320 111 112110 0 0
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------CC-ceEEEecccccCCCCCC----cccccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------LS-NVYTFGPTFRAENSNTS----RHLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~~-kvfeI~~~FR~E~~~t~----rHl~EFtmlE~e~~~~~~~~lm 283 (487)
+++.+|+.-..-.. ++.... +. |+|++++|||+|.+ +. .=.-||||.|+.. |++.+++.
T Consensus 221 -------~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~s-g~l~GL~RvReF~Q~DaHi-f~~~~q~~ 291 (545)
T PRK14799 221 -------GDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKK-GELYGLLRVRGFVQDDGHI-FLREDQLR 291 (545)
T ss_pred -------CceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCC-CCccccccceeEEEcccEE-EeCHHHHH
Confidence 23334444433333 332221 22 89999999999987 33 2346999999998 88888887
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+.+.+++..+..-.
T Consensus 292 ~E~~~~l~~i~~vy 305 (545)
T PRK14799 292 EEIKMLISKTVEVW 305 (545)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877776665544
No 98
>PLN02908 threonyl-tRNA synthetase
Probab=97.49 E-value=0.00041 Score=77.63 Aligned_cols=123 Identities=19% Similarity=0.180 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
+-.-.+++..|++.+|+.+.+.||.||.||.|.+..- .+.+ +.|.++ .
T Consensus 317 lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~-~----------------------- 372 (686)
T PLN02908 317 LPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFE-I----------------------- 372 (686)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEe-c-----------------------
Confidence 4567789999999999999999999999999998542 1111 122210 0
Q ss_pred cccccccCcccccccchhhhH-HHHhc------cCC-ceEEEecccccCCCC---CCcccccccceeeEEccCCHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~------g~~-kvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm~ 284 (487)
-+.+++|+....-.. .+... .+. |+|++++|||+|.+. +-.=.-||+|.|.+. |+..+++.+
T Consensus 373 ------~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~ 445 (686)
T PLN02908 373 ------EKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKD 445 (686)
T ss_pred ------CCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHH
Confidence 023344444443333 22221 122 899999999999762 212235899999998 888888888
Q ss_pred HHHHHHHHHHHHh
Q 011364 285 CATAYLQYVVRYI 297 (487)
Q Consensus 285 ~~e~li~~~~~~~ 297 (487)
.+++++..+..-+
T Consensus 446 e~~~~l~~~~~v~ 458 (686)
T PLN02908 446 EVKGVLDFLDYVY 458 (686)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665443
No 99
>PLN02530 histidine-tRNA ligase
Probab=97.49 E-value=0.0005 Score=73.96 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------C-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------E-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
+-.-.+.|..|.+.+++.|...||.||.||++...+- + -..+.|.+.+..
T Consensus 80 lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~----------------------- 136 (487)
T PLN02530 80 PPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKG----------------------- 136 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCC-----------------------
Confidence 3456778899999999999999999999999988432 0 011233332111
Q ss_pred ccccccCcccccccchhhh--H-HHHhcc-----C-CceEEEecccccCCCCCCcccccccceeeEEccCC----HHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLN--A-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDM 283 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~--l-~ll~~g-----~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm 283 (487)
|+.+-|+ |++= . |+++.. + -|.|++++|||.|..... +.-||+|+.+|.-+.+ --|++
T Consensus 137 ------g~~l~LR--pD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi 207 (487)
T PLN02530 137 ------GRRVALR--PELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELL 207 (487)
T ss_pred ------CCEEecC--CCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHH
Confidence 2332232 3332 2 444332 2 289999999999976333 4579999999987654 23556
Q ss_pred HHHHHHHHHH
Q 011364 284 ACATAYLQYV 293 (487)
Q Consensus 284 ~~~e~li~~~ 293 (487)
.++.+.+..+
T Consensus 208 ~l~~~~l~~l 217 (487)
T PLN02530 208 AAIVTFFKRV 217 (487)
T ss_pred HHHHHHHHHc
Confidence 6555544443
No 100
>PLN02972 Histidyl-tRNA synthetase
Probab=97.47 E-value=0.00054 Score=76.10 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
.+-.-...|..|...+++.|...||.||+||++..... +...+.|.+.+..
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~g----------------------- 392 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQG----------------------- 392 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCC-----------------------
Confidence 35567788999999999999999999999999975421 1112234432211
Q ss_pred ccccccCcccccccchhhhH-HHHhcc---CCceEEEecccccCCCCCCcccccccceeeEEccC-C-H---HHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACAT 287 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~-~---~~lm~~~e 287 (487)
|+.+-|+.---.-. |+++.. --|.|+|++|||.|.. ..-+.-||+|+.+|..+. + . -|++.++-
T Consensus 393 ------Gr~LaLRPDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~p-qkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~ 465 (763)
T PLN02972 393 ------GELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNP-SKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLT 465 (763)
T ss_pred ------CCEEEeCCCChHHHHHHHHhCCCCcceEEEeccEEecCCC-CCCCCccceEEeEEEEcCCCcchhhHHHHHHHH
Confidence 22222221111111 444322 2378889999999976 344568999999999875 2 2 36677777
Q ss_pred HHHHHH
Q 011364 288 AYLQYV 293 (487)
Q Consensus 288 ~li~~~ 293 (487)
+.++.+
T Consensus 466 E~L~~L 471 (763)
T PLN02972 466 ELLDEL 471 (763)
T ss_pred HHHHhC
Confidence 666554
No 101
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.45 E-value=0.00045 Score=73.02 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
+-.-...+..+.+.+++.|...||.||.||+|...+. . |. .+.|.+++.+
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~--------------------- 72 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG--------------------- 72 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC---------------------
Confidence 3445677889999999999999999999999987531 0 11 1244443221
Q ss_pred ccccccccCcccccccchhhhH---HHHhc----cCC-ceEEEecccccCCCCCCcccccccceeeEEccCC----HHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA---ETYAT----ALS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDD 282 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l---~ll~~----g~~-kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~l 282 (487)
|+.+.| -|++=. |+++. ... |.|++++|||.|.. ..-+.-||+|+.+|.-..+ --|+
T Consensus 73 --------g~~l~L--RpD~T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~-~~gr~rE~~Q~g~EiiG~~~~~adaEv 141 (423)
T PRK12420 73 --------KRDLAL--RYDLTIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPI-KQGRFREFIQCDVDIVGVESVMAEAEL 141 (423)
T ss_pred --------Cceecc--cccccHHHHHHHHhCcCCCCCeeEEEEcceECCCCC-CCCccceeEECCeeeECCCCCcccHHH
Confidence 222222 222221 33332 123 89999999999976 3456789999999986653 2467
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
+.++-+.++.+
T Consensus 142 i~la~~~l~~l 152 (423)
T PRK12420 142 MSMAFELFRRL 152 (423)
T ss_pred HHHHHHHHHHC
Confidence 77776666544
No 102
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.44 E-value=0.00056 Score=72.43 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--C--C-C-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G-A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--e--g-~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-...|..+.+.+++.|...||-||.||++..... . | . .+.|.+.+..
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~---------------------- 73 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS---------------------- 73 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC----------------------
Confidence 45667889999999999999999999999988532 0 1 1 1334332211
Q ss_pred cccccccCccccccc--chhhhHHHHhc------cCC-ceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHH
Q 011364 216 DWSQDFFEKPAFLTV--SGQLNAETYAT------ALS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDD 282 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~--Spql~l~ll~~------g~~-kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~l 282 (487)
|+.+.|+. .|++. |+.+. ... |.|++|+|||.|.....|- -||+|+++|.-+.+ . -|+
T Consensus 74 -------g~~l~LRpd~T~~ia-R~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Ev 144 (430)
T CHL00201 74 -------NRDITLRPEGTAGIV-RAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEV 144 (430)
T ss_pred -------CCEEEeCCCCcHHHH-HHHHHccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHH
Confidence 22222322 12222 32211 123 8999999999998644454 59999999987653 1 255
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
+.++-+.++.+
T Consensus 145 i~l~~~~l~~l 155 (430)
T CHL00201 145 IHLAMQIFNEL 155 (430)
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 103
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.37 E-value=0.001 Score=69.60 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.-.+.+..+.+.+++.|...||.||+||++..... .+. ...|.+.+...
T Consensus 18 p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~----------------------- 74 (392)
T PRK12421 18 PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLS----------------------- 74 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCC-----------------------
Confidence 345677889999999999999999999999986432 111 12343322100
Q ss_pred cccccCcccccc--cchhhhHHHHhc-----cCCceEEEecccccCCCCCCcccccccceeeEEccCC-HH---HHHHHH
Q 011364 218 SQDFFEKPAFLT--VSGQLNAETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACA 286 (487)
Q Consensus 218 ~~~~~~~~~~L~--~Spql~l~ll~~-----g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~---~lm~~~ 286 (487)
|+.+-|+ ..+++. |+.+. .--|.|++++|||.+.....| .-||+|+.+|.-+.+ .. |++.++
T Consensus 75 -----g~~l~LRpD~T~~ia-R~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~ 147 (392)
T PRK12421 75 -----GRLMGVRADITPQVA-RIDAHLLNREGVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLM 147 (392)
T ss_pred -----CcEEEECCcCCHHHH-HHHHhhcCCCCceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHH
Confidence 1111111 112222 22221 134899999999998763333 479999999987653 32 777777
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
-+.++.+
T Consensus 148 ~e~l~~l 154 (392)
T PRK12421 148 LGLLRNA 154 (392)
T ss_pred HHHHHHc
Confidence 7777665
No 104
>PLN02837 threonine-tRNA ligase
Probab=97.37 E-value=0.00068 Score=74.92 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++.+|.+.+++...++||.||.||.|....- .+.+ +.|.+.+..
T Consensus 243 ~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~---------------------- 300 (614)
T PLN02837 243 HPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIE---------------------- 300 (614)
T ss_pred echHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCC----------------------
Confidence 4567889999999999999999999999999998543 1111 122110000
Q ss_pred cccccccCcccccccchhhh-----HHHHhc--cCC-ceEEEecccccCCCCCCc----ccccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLN-----AETYAT--ALS-NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~-----l~ll~~--g~~-kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm 283 (487)
+....|..+.+-. +.-+.+ .+. |++|+++|||+|.+ +.+ =.-||+|.|.+. |+..++..
T Consensus 301 -------~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~ 371 (614)
T PLN02837 301 -------DELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIK 371 (614)
T ss_pred -------CceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHH
Confidence 1111233333222 211111 122 79999999999975 321 234899999996 99988888
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+..++++.....-+
T Consensus 372 ~e~~~~l~~~~~~~ 385 (614)
T PLN02837 372 DEIRGVLDLTEEIL 385 (614)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777554443
No 105
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.26 E-value=0.0014 Score=72.22 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++..|.+.+++.+.+.||.+|.||.+..... .|-. +.|.++.-
T Consensus 223 ~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~----------------------- 279 (613)
T PRK03991 223 YPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD----------------------- 279 (613)
T ss_pred EcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCC-----------------------
Confidence 3467889999999999999999999999999954321 1111 23332100
Q ss_pred cccccccCcccccccchhhhHH-----HHhcc--CC-ceEEEec-ccccCCCCCC----cccccccceeeEEccCCHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNAE-----TYATA--LS-NVYTFGP-TFRAENSNTS----RHLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l~-----ll~~g--~~-kvfeI~~-~FR~E~~~t~----rHl~EFtmlE~e~~~~~~~~l 282 (487)
+.+++|+...+...= ...+. +. |+||+++ |||+|.+ +. .=+-||||.|.+.-..+.++.
T Consensus 280 -------~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~-g~l~GL~RvReF~~~D~h~f~~~~eqa 351 (613)
T PRK03991 280 -------KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQR-GELVGLKRLRAFTMPDMHTLCKDMEQA 351 (613)
T ss_pred -------CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCC-CCCcCcccccceEeeeEEEEECCHHHH
Confidence 123344443333221 11111 22 7999999 9999975 22 234589999999854568999
Q ss_pred HHHHHHHHHHHHHHh
Q 011364 283 MACATAYLQYVVRYI 297 (487)
Q Consensus 283 m~~~e~li~~~~~~~ 297 (487)
++..++++..+..-+
T Consensus 352 ~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 352 MEEFEKQYEMILETG 366 (613)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888766554
No 106
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=97.09 E-value=0.0015 Score=69.62 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=38.3
Q ss_pred ceEEEecccccCCCCCCccc----ccccceeeEEccCCHHHHHHHHHHHHHHHHHHh
Q 011364 245 NVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYVVRYI 297 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl----~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~ 297 (487)
|+.|+|+|||+|.+ + +|- -||||.|.+ .|++-+++.+.+..++..+..-+
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~~l 241 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKNWL 241 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHHHH
Confidence 79999999999976 5 443 799999997 68887777776666665554443
No 107
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.96 E-value=0.0044 Score=64.35 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCC------CC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
..+.+.+++.|...||.||.||++..... +. ..+.|.+.+.+ |+
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~-----------------------------G~ 58 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDEN-----------------------------GE 58 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCC-----------------------------CC
Confidence 37889999999999999999999987532 11 11234443221 22
Q ss_pred cccccc--chhhhHHHHhc----cCCceEEEecccccCCCCCCcccccccceeeEEccC-C-H---HHHHHHHHHHHHHH
Q 011364 225 PAFLTV--SGQLNAETYAT----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQYV 293 (487)
Q Consensus 225 ~~~L~~--Spql~l~ll~~----g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~-~---~~lm~~~e~li~~~ 293 (487)
.+.|+. .+++. |+.+. .--|+|++++|||.|. + ..-||+|+.+|.-+. + . -|++.++-+.+..+
T Consensus 59 ~l~LRpD~T~pia-R~~~~~~~~~p~R~~Y~g~VfR~~~--g--r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 59 ELCLRPDFTIPVC-RRHIATAGGEPARYAYLGEVFRQRR--D--RASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEeeCCCCcHHHH-HHHHHcCCCCCeEEEEEccEEECCC--C--CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 222211 11221 22221 1248999999999982 2 246999999999764 3 2 37788877777654
No 108
>PLN02678 seryl-tRNA synthetase
Probab=96.93 E-value=0.0014 Score=69.34 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC 180 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~ 180 (487)
...+++..|++.+++++.++||.||.||.|.....
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~ 206 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDV 206 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHH
Confidence 46888999999999999999999999999998543
No 109
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.85 E-value=0.01 Score=46.65 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=54.2
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEE
Q 011364 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (487)
Q Consensus 32 V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~v 111 (487)
|.|.|-|.+.+..++-.|+.|+|.. ..|.|++-+... ...... +..||-|.|.|.+.- + .+.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~--a~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~--~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDET--GTVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-R--DGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCC--EEEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-C--CeEEEEEEeeEEE
Confidence 4688888876446556888999987 469998875432 111234 899999999999875 3 3479999999987
Q ss_pred E
Q 011364 112 V 112 (487)
Q Consensus 112 l 112 (487)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 110
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.72 E-value=0.023 Score=44.82 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=54.6
Q ss_pred EEEEEEEeeeec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 011364 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 32 V~v~GwV~~iR~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~ 110 (487)
+++.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++..+ ..|..|+.|.|.|.+...+.+ +++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~-~~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLG-FPLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCC-CCCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 678999999985 44599999999985 5899888753 33332 249999999999999965322 35788887764
No 111
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.62 E-value=0.029 Score=46.12 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=55.6
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch--HhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 32 V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~--~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
|++.|+|.++...++-.=+.|.|+|| +|-+.+....... ..... +..|++|.|.|++..-+. ...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG--~I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~g---~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTG--TIEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQG---KKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCC--cEEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccCC---eeEEEEEEE
Confidence 78999999999876545567999997 4898887654311 12344 999999999999977643 466777777
Q ss_pred EEEcc
Q 011364 110 VLVGK 114 (487)
Q Consensus 110 ~vls~ 114 (487)
..+..
T Consensus 75 ~~v~d 79 (95)
T cd04478 75 RPVTD 79 (95)
T ss_pred EEeCC
Confidence 75553
No 112
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0065 Score=64.87 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-------CC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
--++++.+|.+.+|+-|++.|..||-=|+|+++.- ++ +.++|.+++.+
T Consensus 45 ~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg------------------------ 100 (500)
T COG0442 45 LGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRG------------------------ 100 (500)
T ss_pred cHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccC------------------------
Confidence 36888999999999999999999999999999431 12 22566665432
Q ss_pred cccccCcccccccchhhhH-HHH---hcc---CC-ceEEEecccccCCC--CCCcccccccceeeEEccCCHHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETY---ATA---LS-NVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll---~~g---~~-kvfeI~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
++++.|+...|--. -++ +.+ +. ++|||..+||+|.- .+---.-||+|=|.|..+.|.+++....+
T Consensus 101 -----~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~ 175 (500)
T COG0442 101 -----DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYE 175 (500)
T ss_pred -----CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHH
Confidence 34445555554433 222 222 22 79999999999943 01113479999999999999999988888
Q ss_pred HHHHH
Q 011364 288 AYLQY 292 (487)
Q Consensus 288 ~li~~ 292 (487)
+++..
T Consensus 176 ~~~~~ 180 (500)
T COG0442 176 KMLDA 180 (500)
T ss_pred HHHHH
Confidence 87753
No 113
>PLN02320 seryl-tRNA synthetase
Probab=96.27 E-value=0.013 Score=62.67 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc---
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (487)
..++...+++.++++..++||.||.||.|..... ++.+....- .. ...|
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~-e~--------------------------~~~y~ie 284 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRG-DN--------------------------TQVYSID 284 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCccc-cc--------------------------CceeEEC
Confidence 4456678999999999999999999999998643 333321000 00 0001
Q ss_pred Ccccccccchh-----hhH-HHH-hccCC-ceEEEecccccCCCCCC------cccccccceeeEEccCCHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQ-----LNA-ETY-ATALS-NVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKDDMACATA 288 (487)
Q Consensus 223 ~~~~~L~~Spq-----l~l-~ll-~~g~~-kvfeI~~~FR~E~~~t~------rHl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (487)
+.+.||.-..| +|. +.+ -..+. |+.++++|||.|.+... --.-+|++.|... |+.-++..+..++
T Consensus 285 ~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ 363 (502)
T PLN02320 285 GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEE 363 (502)
T ss_pred CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHH
Confidence 23345532222 333 222 12233 79999999999954111 1223799999965 7888888888888
Q ss_pred HHHHHHHH
Q 011364 289 YLQYVVRY 296 (487)
Q Consensus 289 li~~~~~~ 296 (487)
++..+-.-
T Consensus 364 ll~~~e~i 371 (502)
T PLN02320 364 LIQIEEDL 371 (502)
T ss_pred HHHHHHHH
Confidence 87766433
No 114
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.012 Score=61.47 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc---
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (487)
+.++--.+++.+=++..++||.|+.+|.|+..... |.+.+-.. +.+.|
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf----------------------------~e~~y~v~ 224 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKF----------------------------EEDLYKVE 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCC----------------------------cccceEec
Confidence 44444567777777778999999999999987653 33321110 01222
Q ss_pred CcccccccchhhhH-HHH-----h-ccCC-ceEEEecccccCCCCC--------CcccccccceeeEEccCCHHHHHHHH
Q 011364 223 EKPAFLTVSGQLNA-ETY-----A-TALS-NVYTFGPTFRAENSNT--------SRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 223 ~~~~~L~~Spql~l-~ll-----~-~g~~-kvfeI~~~FR~E~~~t--------~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+..+||....|.-+ .+. . ..+. +++-.+||||.|.... +.| +|.++|... ++.-++-.+.-
T Consensus 225 ~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~Pe~S~~~~ 301 (429)
T COG0172 225 DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITKPEESEEEL 301 (429)
T ss_pred CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeee--eeeeEEEEE-EeCcchhHHHH
Confidence 12467777776655 332 2 2233 5777999999995421 235 899999854 66776666666
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
|+|+...
T Consensus 302 E~m~~~a 308 (429)
T COG0172 302 EEMLGNA 308 (429)
T ss_pred HHHHHHH
Confidence 7666554
No 115
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.21 E-value=0.051 Score=44.78 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=50.5
Q ss_pred EEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-------------------hHhHhccCCCCCcEEEEEeeEee
Q 011364 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-------------------YDQVKSGLITTGASIWIQGNVVP 94 (487)
Q Consensus 34 v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-------------------~~~~~~~~L~~gd~V~V~G~~~~ 94 (487)
|.|+|.+++......-+.|.|++| .|-|++...... .+.... +.+|++|.|.|++..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG--~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTG--VVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCc--eEEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 679999999876556678999997 489988754320 012344 999999999999987
Q ss_pred cCCCCceEEEEEeEEE
Q 011364 95 SQGSKQKVELKVNKIV 110 (487)
Q Consensus 95 ~~~~~~~~el~~~~i~ 110 (487)
=++ ...|.++.+.
T Consensus 78 frg---~~ql~i~~~~ 90 (92)
T cd04483 78 YRG---EREINASVVY 90 (92)
T ss_pred cCC---eeEEEEEEEE
Confidence 543 3556666554
No 116
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.13 E-value=0.028 Score=59.83 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhh-hcCCeEEEeCCeeeccCCC---CCC-----CCceeeecCC-Ccccc---------cCCCCCC
Q 011364 146 AVARVRNALAYATHKFF-QENGFIWISSPIITASDCE---GAG-----EQFCVTTLIP-SSREA---------AESPVDA 206 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff-~~~gF~EV~TP~L~~~~~e---g~~-----~~F~vt~~~~-~~~~~---------~~~~~~~ 206 (487)
...++...+.+.+++.+ .+.||.||-+|.|.+.... |.- +.|.|++... .+... ...|++.
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 35567777888887655 4569999999999986432 211 2333332110 00000 0000000
Q ss_pred CCCCCCCCccccccccCcccccccchhhhH-HHHhcc------C-CceEEEe-cccccCCC--CCCcccccccceeeEEc
Q 011364 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFG-PTFRAENS--NTSRHLAEFWMIEPELA 275 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~-~~FR~E~~--~t~rHl~EFtmlE~e~~ 275 (487)
+. ...=..+++|..+.+..+ .++..- + -|+|++. +|||.|.. ++-.=.-||+|.|...
T Consensus 301 L~----------~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~- 369 (520)
T TIGR00415 301 LK----------NGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW- 369 (520)
T ss_pred cc----------ccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-
Confidence 00 000012456888877776 443322 2 3789955 79999973 3323345999999988
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 011364 276 FADLKDDMACATAYLQYV 293 (487)
Q Consensus 276 ~~~~~~lm~~~e~li~~~ 293 (487)
+++.++..+..++++...
T Consensus 370 ~~tpEea~e~~e~mle~~ 387 (520)
T TIGR00415 370 IAEPEETEEIRDKTLELA 387 (520)
T ss_pred EeCHHHHHHHHHHHHHHH
Confidence 889999988888888654
No 117
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.08 E-value=0.045 Score=54.31 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~ 179 (487)
+.-+..+..+.+.+++.|.+.||-||.||++-..+
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d 38 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLD 38 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHH
Confidence 44566677899999999999999999999997643
No 118
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.07 E-value=0.047 Score=45.61 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=59.5
Q ss_pred CCEEEEEEEEeeeec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
-+.|.|.|=|.+.+. .++-+|++|+|+. .+|+|++-.... ..+....++.|+-|.|.|.+.--+.. +.+.+.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~~--~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSRA--RRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHHH--hhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 377999999999998 6778999999987 579999987532 22220128999999999999876543 36888888
Q ss_pred EEE
Q 011364 108 KIV 110 (487)
Q Consensus 108 ~i~ 110 (487)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 775
No 119
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=95.84 E-value=0.058 Score=52.96 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=55.4
Q ss_pred CCCEEEEEEEEeeeecC----CCeEEEEEEcCCCCeeeEEEEeCCccc--hHhHhccCCCCCcEEEEEeeEeecCCCCce
Q 011364 28 VGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~ 101 (487)
+=+.|+|.|.|..+... .+.+|+.|-|+||...|.|+++.+... .-.+.. + .|++|.|+|++. .+.
T Consensus 65 PI~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs-----r~~ 136 (256)
T PF10451_consen 65 PIRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS-----RNE 136 (256)
T ss_dssp EE-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE-----SSS
T ss_pred ccEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc-----cCc
Confidence 33679999999999765 678999999999833689998864210 011334 6 999999999999 236
Q ss_pred EEEEEeEEEEEc
Q 011364 102 VELKVNKIVLVG 113 (487)
Q Consensus 102 ~el~~~~i~vls 113 (487)
.+|.++.+.++.
T Consensus 137 ~ql~ve~i~~~~ 148 (256)
T PF10451_consen 137 RQLDVERIELVR 148 (256)
T ss_dssp EEEEEEEEEEET
T ss_pred EEEEEEEEEccC
Confidence 889999988765
No 120
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.71 E-value=0.015 Score=62.48 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=36.6
Q ss_pred ceEE-EecccccCCC--CCCcccccccceeeEEccCCHHHHHHHHHHHHHH
Q 011364 245 NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 292 (487)
Q Consensus 245 kvfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (487)
|+|+ .|+|||+|.. ++-.=.-||+|.|.. .|++.+++.+..++++.+
T Consensus 337 rl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 337 KFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIRDELLKY 386 (517)
T ss_pred HHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHHHHHHHH
Confidence 7899 5599999952 222233599999998 689999999999998844
No 121
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.67 E-value=0.098 Score=42.99 Aligned_cols=73 Identities=19% Similarity=0.417 Sum_probs=53.2
Q ss_pred EEEEEEeeeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 33 VVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 33 ~v~GwV~~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
.|.|.|.+++. .+.-.|+.|.|.++ .|.+++-.....+.. ... |..||-|.|.|.+..-. .|.++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~l 71 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEKL 71 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEEE
Confidence 68999998865 45567889999874 589877654311111 234 99999999999986543 5888898
Q ss_pred EEEccC
Q 011364 110 VLVGKS 115 (487)
Q Consensus 110 ~vls~~ 115 (487)
++++..
T Consensus 72 ~~~glg 77 (91)
T cd04482 72 RVIRLA 77 (91)
T ss_pred EECCCc
Confidence 887654
No 122
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.027 Score=59.91 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=56.4
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
+.|++|.|.|-|..++.-++-+-..|+|++|. +++..-.. .+...-.. +.+||+|.|+|.+..+.+. +-|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~-aGvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEE-AGVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhcc-CCcccCCC--CCCCceEEEEEEEeecCCc---EEEee
Confidence 78999999999999998766666789999975 88754432 11111234 9999999999999887654 44444
Q ss_pred eEEEEE
Q 011364 107 NKIVLV 112 (487)
Q Consensus 107 ~~i~vl 112 (487)
..++.|
T Consensus 283 ~~me~L 288 (715)
T COG1107 283 EAMEKL 288 (715)
T ss_pred hhhHHh
Confidence 455443
No 123
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=94.97 E-value=0.18 Score=42.40 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=51.4
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
...++++++.. ..++.|++.|.|.+.-..- . ..++|.+| .|+|-++... |.- .. +++++-|.+.
T Consensus 21 ~~~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d--~-Y~F~D~TG--~I~VeId~~~--w~g-~~--vt~~~~Vri~ 84 (103)
T PF04076_consen 21 TVTTVAQAKNA------KDDTPVTLEGNIVKQLGDD--K-YLFRDATG--EIEVEIDDDV--WRG-QT--VTPDDKVRIS 84 (103)
T ss_dssp ----HHHHTTS-------SSEEEEEEEEEEEEEETT--E-EEEEETTE--EEEEE--GGG--STT-------TTSEEEEE
T ss_pred CeEeHHHHhhC------cCCCeEEEEEEEEEEecCC--E-EEEECCCC--cEEEEEChhh--cCC-cc--cCCCCEEEEE
Confidence 34667777653 5678999999976654433 2 45899997 4888777542 211 23 8999999999
Q ss_pred eeEeecCCCCceEEEEEeEEE
Q 011364 90 GNVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~ 110 (487)
|.+-+.-. ..||.|..|+
T Consensus 85 GeVDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 85 GEVDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEEEETT---EEEEEEEEEE
T ss_pred EEEeCCCC---ceEEEEEEEE
Confidence 99997643 4788887774
No 124
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=94.85 E-value=0.27 Score=37.06 Aligned_cols=69 Identities=17% Similarity=0.395 Sum_probs=49.7
Q ss_pred EEEEEEeeeecC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 33 VVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 33 ~v~GwV~~iR~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
++.|.|.+++.. +.++++.|.|+++ ..+.+++-.+. ++.. .. +..|+.|.|.|++.... +...+.+.+
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~-~~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~~ 72 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTG-GTIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVES 72 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCC-CEEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEeee
Confidence 367888888765 3789999999993 25888887643 2222 34 89999999999997643 246666654
Q ss_pred E
Q 011364 109 I 109 (487)
Q Consensus 109 i 109 (487)
+
T Consensus 73 ~ 73 (75)
T cd03524 73 I 73 (75)
T ss_pred e
Confidence 4
No 125
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.80 E-value=0.056 Score=58.95 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (487)
.-..+|..+.+.+|.-..+.||.||.||.+....- +..+ .+ -+.|...
T Consensus 218 kG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l------~~~S-GH-------------------------~~~y~e~ 265 (589)
T COG0441 218 KGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLEL------WELS-GH-------------------------WDNYKED 265 (589)
T ss_pred CcccHHHHHHHHHHHHHHhcCceEecCCeeeeccc------chhc-cc-------------------------hhhcccc
Confidence 34578899999999999999999999999988532 2211 01 0123444
Q ss_pred cccccch--hhhHHHHh---------cc---C----CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 226 AFLTVSG--QLNAETYA---------TA---L----SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 226 ~~L~~Sp--ql~l~ll~---------~g---~----~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
+|+..+. ++.++-|. .. . -|++++|.|||.|.+ +.-| +-+|||=|.-. |+..+++.
T Consensus 266 mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~ 343 (589)
T COG0441 266 MFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIK 343 (589)
T ss_pred ceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHH
Confidence 4444443 22222111 11 1 288999999999987 4444 47899999855 78888888
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+.+.+.+..+..-.
T Consensus 344 ~E~~~~~~~i~~v~ 357 (589)
T COG0441 344 DEFKGILELILEVY 357 (589)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776554
No 126
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.77 E-value=0.14 Score=56.09 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCC--CCC---C--CCceeeecCCCcccccCCCCCCCCCCCCCCccccccccC
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDC--EGA---G--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--eg~---~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (487)
..++.+.+|++|...||.|+-|..+++..- ... . +. +.-.|+ ++ .
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~--i~l~NP------------ls--------------~ 412 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDY--VEVLNP------------IS--------------E 412 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCe--EEEcCC------------Cc--------------c
Confidence 345677899999999999999999987521 100 0 01 111111 11 1
Q ss_pred cccccccchhhhH-HHHhc---cC--CceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHH
Q 011364 224 KPAFLTVSGQLNA-ETYAT---AL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (487)
Q Consensus 224 ~~~~L~~Spql~l-~ll~~---g~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (487)
.-.+|++|-=--+ +.+.. +. -|+||||+||+++.. +..|..|++++-+-.+.. |+.++...+|.++..
T Consensus 413 e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 413 DYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred chheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 1124555432222 33322 22 279999999998753 345778999999888763 788888888888754
No 127
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=94.69 E-value=0.27 Score=42.17 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=58.8
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
..+++++...- +.+..|++.|-|.+-- ++=.| ..||+|| +|+|.++... |.- .. +++.|-|.+.
T Consensus 44 ~~~TV~~Ak~~------~Dda~V~l~GnIv~qi--~~D~y-~FrD~sG--eI~VeIdd~~--w~g-~t--v~P~dkV~I~ 107 (128)
T COG3111 44 KVTTVDQAKTL------HDDAWVSLEGNIVRQI--GDDRY-VFRDASG--EINVDIDDKV--WNG-QT--VTPKDKVRIQ 107 (128)
T ss_pred ceeEHHHhhcc------ccCCeEEEEeeEEEee--CCceE-EEEcCCc--cEEEEecccc--cCC-cc--cCcccEEEEE
Confidence 34566555543 5678899999985433 33355 4899997 4999888653 110 23 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEE
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLV 112 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl 112 (487)
|.+-+.-. ..||.|+.|+.+
T Consensus 108 GevDk~~~---~~eIdV~~I~k~ 127 (128)
T COG3111 108 GEVDKDWN---SVEIDVKHIEKL 127 (128)
T ss_pred eEEcCCCc---cceeEhhheEec
Confidence 99987632 478888888765
No 128
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=94.59 E-value=0.19 Score=46.92 Aligned_cols=94 Identities=12% Similarity=0.210 Sum_probs=63.6
Q ss_pred ccceeeccccCCCCC---CC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCC
Q 011364 9 RKKLKIVDVKGGPNE---GL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~---~~----~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L 80 (487)
.+.++||+|.....+ +. ...=..|.+-|||+++..+..-+|+.|.||+|. |-|-..+.... -++.+. +
T Consensus 39 LrpvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~ 114 (258)
T COG5235 39 LRPVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--L 114 (258)
T ss_pred eeeeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--c
Confidence 466889999874211 11 001134889999999999977789999999974 77777765432 223445 7
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 81 TTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 81 ~~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
.-|-.|.|.|.++.=.++ ..|.+..|
T Consensus 115 ~~~~yvkV~G~lk~F~GK---~~I~~~~i 140 (258)
T COG5235 115 EEQNYVKVNGSLKTFNGK---RSISASHI 140 (258)
T ss_pred ccccEEEEecceeeeCCe---eEEehhhe
Confidence 778899999999765433 55554444
No 129
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=94.56 E-value=0.49 Score=37.73 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=44.0
Q ss_pred EEEEEEEeeeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchH--hHhccCCCCCcEEEEEeeEee
Q 011364 32 IVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVP 94 (487)
Q Consensus 32 V~v~GwV~~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~--~~~~~~L~~gd~V~V~G~~~~ 94 (487)
|.++|-|.++|. .|+. |+.|.|.+| ++.+++-++. |+ ..+. .|..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G--~~Ev~~F~~~--~~~~~~~~-~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTG--RITVLLTKDK--EELFEEAE-DILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCC--EEEEEEeCch--hhhhhhhh-hccCCCEEEEEEEEec
Confidence 688999999873 2556 999999997 4999888753 44 3332 3889999999999954
No 130
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=94.38 E-value=0.27 Score=38.53 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=49.0
Q ss_pred EEEEEeeeec----CC-CeEEEEEEcCCCCeeeEEEEeCCccchHhH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 34 VAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 34 v~GwV~~iR~----~g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
+.|.|.+++. .| .++++.|.|++|. +.+++-.. .|+.. .. +..|..|.|.|++.... +..++.+.
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~--~~~~~f~~--~~~~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~ 72 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGS--IEVVVFPE--TYEKYRDL--LKEDALLLVEGKVERRD---GGLRLIAE 72 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCe--EEEEECHH--HHHHHHHH--hcCCCEEEEEEEEEecC---CceEEEee
Confidence 4566655432 23 4799999999974 88888753 24333 34 89999999999998643 25788877
Q ss_pred EEEEEc
Q 011364 108 KIVLVG 113 (487)
Q Consensus 108 ~i~vls 113 (487)
++..+.
T Consensus 73 ~i~~~~ 78 (84)
T cd04485 73 RIEDLE 78 (84)
T ss_pred ccccHH
Confidence 765443
No 131
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.10 E-value=0.21 Score=50.48 Aligned_cols=123 Identities=23% Similarity=0.189 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC--------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE--------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e--------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
--+|.-.++.+.++.=|++-|=.+|.-|+|++..-. -+.++|.+-+.+
T Consensus 50 lg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~------------------------ 105 (457)
T KOG2324|consen 50 LGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRK------------------------ 105 (457)
T ss_pred chHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccC------------------------
Confidence 356777899999999999999999999999984321 123455442221
Q ss_pred cccccCcccccccchhhhH-HHHhccCC--------ceEEEecccccCCC-C-CCcccccccceeeEEccCCHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYATALS--------NVYTFGPTFRAENS-N-TSRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~g~~--------kvfeI~~~FR~E~~-~-t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
++...|+..-|=-- .+|+.-.. +||||++=||+|-- + +-----||.|=|.|. |.+-++--..+
T Consensus 106 -----gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYs-Fd~~~etA~qT 179 (457)
T KOG2324|consen 106 -----GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYS-FDSDEETAQQT 179 (457)
T ss_pred -----CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhc-ccCCHHHHHHH
Confidence 33444544444433 45655443 89999999999931 0 111225999999997 55433433444
Q ss_pred HHHHHHHHHHhh
Q 011364 287 TAYLQYVVRYIL 298 (487)
Q Consensus 287 e~li~~~~~~~~ 298 (487)
-.++.....++.
T Consensus 180 y~~v~~aY~~iF 191 (457)
T KOG2324|consen 180 YQLVDQAYDRIF 191 (457)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 132
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=94.08 E-value=0.93 Score=35.58 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=45.2
Q ss_pred CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEcc
Q 011364 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 45 g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~ 114 (487)
+.++++.|.|++| .+.+++-.... ..... +..|.+|.|.|++.... +..++.+.++..+..
T Consensus 18 ~~~~~~~l~D~tg--~i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~~i~~l~~ 78 (83)
T cd04492 18 KPYLALTLQDKTG--EIEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEYR---GRLQLKIQRIRLVTE 78 (83)
T ss_pred CcEEEEEEEcCCC--eEEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEeC---CceeEEEEEEEECCc
Confidence 3589999999997 48998876432 22234 99999999999997632 257888888876554
No 133
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=94.03 E-value=0.61 Score=40.58 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=56.8
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEe
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (487)
..+++++.+. ..+..|++.|.|.+.-..- . +.++|++|. |+|-++... | ....++++|-|.+.|
T Consensus 45 ~~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d--~-Y~F~D~TG~--I~VeId~~~--w---~G~~v~p~d~V~I~G 108 (126)
T TIGR00156 45 KMTVDFAKSM------HDGASVTLRGNIISHIGDD--R-YVFRDKSGE--INVVIPAAV--W---NGREVQPKDMVNISG 108 (126)
T ss_pred eEeHHHHhhC------CCCCEEEEEEEEEEEeCCc--e-EEEECCCCC--EEEEECHHH--c---CCCcCCCCCEEEEEE
Confidence 3556666553 5678999999997765443 2 458999974 888886532 1 111389999999999
Q ss_pred eEeecCCCCceEEEEEeEEE
Q 011364 91 NVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 91 ~~~~~~~~~~~~el~~~~i~ 110 (487)
.+-+.-. ..||.|++|+
T Consensus 109 eVDk~~~---~~~IdV~~I~ 125 (126)
T TIGR00156 109 SLDKKSA---PAEVDVTHIQ 125 (126)
T ss_pred EECCCCC---CeEEEEEEEE
Confidence 9986533 3678777775
No 134
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=93.96 E-value=0.24 Score=43.88 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=48.8
Q ss_pred ceeeccccCCCCC-----CCCCCCCEEEEEEEEeeeec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCc
Q 011364 11 KLKIVDVKGGPNE-----GLDRVGLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (487)
Q Consensus 11 ~~~i~~i~~~~~~-----~~~~~~~~V~v~GwV~~iR~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd 84 (487)
..+..+|.+.|.+ ...+.|+.|.|.|.|.++.. .++-.++...+..+...++|.++.+......... |+.||
T Consensus 44 ~~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~ 121 (144)
T PF12869_consen 44 SVSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQ 121 (144)
T ss_dssp EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTS
T ss_pred eecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCC
Confidence 3445556555421 33567899999999999976 4555667676655556789998876533333445 99999
Q ss_pred EEEEEeeEeec
Q 011364 85 SIWIQGNVVPS 95 (487)
Q Consensus 85 ~V~V~G~~~~~ 95 (487)
-|.|+|++.--
T Consensus 122 ~Vti~G~~~g~ 132 (144)
T PF12869_consen 122 KVTIKGICTGY 132 (144)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEEEEee
Confidence 99999998654
No 135
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=93.95 E-value=0.31 Score=51.81 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=58.7
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|++.+. .|..+.+|.|+|++.... +.+
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~--~y~~~~~-~l~~~~~v~v~G~v~~~~---~~~ 350 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPK--SYERISE-LLQVDARLIIWGKVDRRD---DQV 350 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999863 2 4999999999974 99988764 3555432 489999999999997632 346
Q ss_pred EEEEeEEEEE
Q 011364 103 ELKVNKIVLV 112 (487)
Q Consensus 103 el~~~~i~vl 112 (487)
.+.+.++.-+
T Consensus 351 ~liv~~i~~l 360 (449)
T PRK07373 351 QLIVEDAEPI 360 (449)
T ss_pred EEEEeEeecH
Confidence 7777777533
No 136
>PRK15491 replication factor A; Provisional
Probab=93.06 E-value=0.57 Score=48.69 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=66.7
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeee-------ecC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL-------RAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i-------R~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L 80 (487)
-++|+||.+. ...|+|.|||.++ |.. |++.=+.|-|.+| ++++++..+..+ .+..+.|
T Consensus 57 ~~kI~dL~~~--------~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG--~ir~tlW~~~a~--~~~~~~l 124 (374)
T PRK15491 57 TTKIADINES--------SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG--SIRLTLWDDLAD--LIKTGDI 124 (374)
T ss_pred cccHHHCCCC--------CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC--eEEEEEECchhh--hhccCCc
Confidence 4567777643 3669999999987 222 4666678999997 499999976532 1221239
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCC
Q 011364 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (487)
Q Consensus 81 ~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~ 118 (487)
..|+++.|.|.+.+.-. .+||.+.+-..+.+|...
T Consensus 125 e~G~v~~I~~~~~~~y~---g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 125 EVGKSLNISGYAKEGYS---GIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCCEEEEeeeeccCcc---cEEEEeCCCceeeecccc
Confidence 99999999998655432 489999888888888644
No 137
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=93.06 E-value=0.13 Score=54.69 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhc--CCeEEEeCCeeeccC
Q 011364 148 ARVRNALAYATHKFFQE--NGFIWISSPIITASD 179 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~--~gF~EV~TP~L~~~~ 179 (487)
..++..|.++-|++|.. .+++||+||+|.+..
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~ 73 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILPEE 73 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCcHH
Confidence 34567899999999965 589999999999843
No 138
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=92.99 E-value=0.63 Score=49.81 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=26.5
Q ss_pred CccceeccHHHHHHHHcCCCCcccc--cccCCCCC
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDA--IPFPRTPG 483 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv--~~FPr~~~ 483 (487)
|...|+|++|||+|...+.++||+. -+||+.|.
T Consensus 317 pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFPa 351 (529)
T PRK06253 317 PVMNLGLGVERLAMILYGAEDVREMVYPQFYEWEL 351 (529)
T ss_pred ceEEEEEeHHHHHhhhcCcccccccCcCCCCCCCC
Confidence 5678999999999999999999984 35555553
No 139
>PRK10053 hypothetical protein; Provisional
Probab=92.59 E-value=1.3 Score=38.92 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=56.3
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEee
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (487)
+++++...- ..+..|++.|.|.+.=..- . +..+|++|. |+|-++.+. +....++++|-|.+.|.
T Consensus 50 ~tV~~a~~~------~Dd~~V~L~G~Iv~~lg~d--~-Y~F~D~tG~--I~VeID~~~-----w~G~~v~p~~kV~I~Ge 113 (130)
T PRK10053 50 MTVEQAKTM------HDGATVSLRGNLIDHKGDD--R-YVFRDKSGE--INVIIPAAV-----FDGREVQPDQMININGS 113 (130)
T ss_pred EEHHHhhcC------cCCCeEEEEEEEEEEeCCc--e-EEEECCCCc--EEEEeCHHH-----cCCCcCCCCCEEEEEEE
Confidence 467776553 4578899999986654332 2 458999974 888887542 12113999999999999
Q ss_pred EeecCCCCceEEEEEeEEE
Q 011364 92 VVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~ 110 (487)
+-+.-. ..||.|+.|+
T Consensus 114 vDk~~~---~~~IdV~~i~ 129 (130)
T PRK10053 114 LDKKSA---PPVVRVTHLQ 129 (130)
T ss_pred ECCCCC---CeEEEEEEEe
Confidence 987633 3788888775
No 140
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=92.21 E-value=0.94 Score=41.94 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=54.5
Q ss_pred CCCCEEEEEEEEeeeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhcc--CCCCCcEEEEEeeEeecCCCCceE
Q 011364 27 RVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG--LITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~--~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
...+.|++.|-|.+.+. .+++.++.|.|++|. +-+++..+...+-.++.+ .+..|++|.|+|.+..=+.. .
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGt--i~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~---~ 123 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGT--ITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGS---S 123 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCCc--EEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeCCC---c
Confidence 55678999999999984 478999999999974 998887654221111111 26689999999999876554 4
Q ss_pred EEEEe
Q 011364 103 ELKVN 107 (487)
Q Consensus 103 el~~~ 107 (487)
||.+.
T Consensus 124 eVkvn 128 (204)
T COG4085 124 EVKVN 128 (204)
T ss_pred eeecc
Confidence 55443
No 141
>PRK14699 replication factor A; Provisional
Probab=92.13 E-value=1 Score=48.37 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=66.3
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeee-------cC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR-------~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
..|+||.. .++.|++.|+|.++- .. |+++=+.|-|.|| ++.+++...... .+..+.|.
T Consensus 58 ~kI~di~~--------~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG--~ir~tlW~~~a~--~~~~g~l~ 125 (484)
T PRK14699 58 VKIENITP--------ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETG--KIKLTLWDNMAD--LIKAGKIK 125 (484)
T ss_pred ccHhHccC--------CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCC--eEEEEEecCccc--hhhhcCCC
Confidence 45777753 246799999999984 22 4566678899997 499999876432 12322399
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCC
Q 011364 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (487)
Q Consensus 82 ~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~ 122 (487)
.||+|.|.|.++.-. ++.||.+.+..++.++...++.+
T Consensus 126 ~GDvv~I~~~~r~~~---~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 126 AGQTLQISGYAKQGY---SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred CCCEEEEcceeccCC---CCceEEeCCCceeeccCcccccC
Confidence 999999999754332 34789888777777765445543
No 142
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=91.83 E-value=0.73 Score=54.11 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeecC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 011364 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el 104 (487)
.+..|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++. |+..+. .|..|.++.|+|++.... +.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~~--~~~~~~-~l~~~~~~~v~g~v~~~~---~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPGL--WERQRR-EALGARLLLVRGRVQNAE---GVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEecC---CeEEE
Confidence 46789999999988752 33999999999974 999988753 555432 389999999999998642 35778
Q ss_pred EEeEEEEEcc
Q 011364 105 KVNKIVLVGK 114 (487)
Q Consensus 105 ~~~~i~vls~ 114 (487)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8888765544
No 143
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=91.42 E-value=0.85 Score=54.08 Aligned_cols=77 Identities=9% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++.... +..
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~--~y~~~~~-~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPK--SYERLSD-HLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999752 2 4999999999974 99988864 3555432 489999999999997642 246
Q ss_pred EEEEeEEEEE
Q 011364 103 ELKVNKIVLV 112 (487)
Q Consensus 103 el~~~~i~vl 112 (487)
.+.++++.-+
T Consensus 1071 ~~~~~~i~~l 1080 (1170)
T PRK07374 1071 QLIIDDCREI 1080 (1170)
T ss_pred EEEEeeeecH
Confidence 7777777544
No 144
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=91.22 E-value=2 Score=35.87 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=48.8
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
+.|+.|++-|+|.+.+.. . +.+.+..| ..++|.++... . +..+-+|.|.|++.. ...|.+
T Consensus 13 f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~------~~~I~~ 72 (101)
T cd04479 13 FVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSP------DLTIRV 72 (101)
T ss_pred hCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECC------CCeEEE
Confidence 688999999999999865 2 34554443 36899887642 3 788899999999974 245666
Q ss_pred eEEEEEcc
Q 011364 107 NKIVLVGK 114 (487)
Q Consensus 107 ~~i~vls~ 114 (487)
....-++.
T Consensus 73 ~~~~~~g~ 80 (101)
T cd04479 73 LSYIDFGD 80 (101)
T ss_pred EEEEECCC
Confidence 66555543
No 145
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=90.78 E-value=1.1 Score=37.95 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=38.3
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
+.|+.|++-|+|.+....|+.+-+.-.|+. .++|.++... . +..+.+|.|.|++....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCC
Confidence 689999999999999977765544334663 5788777542 2 66789999999998653
No 146
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=90.46 E-value=0.88 Score=42.79 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcCCeEEEeCCeeecc
Q 011364 153 ALAYATHKFFQENGFIWISSPIITAS 178 (487)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TP~L~~~ 178 (487)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 46678899999999999999999875
No 147
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=90.42 E-value=1.4 Score=52.18 Aligned_cols=79 Identities=15% Similarity=0.321 Sum_probs=59.3
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++..... +.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~--~~~~~~~-~l~~~~~~~v~g~v~~~~~--~~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPK--VYEKYRS-LLNEDNIVLIKGRVSLRED--EEP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecCC--Cce
Confidence 46789999999999762 3 4999999999974 99998864 3444432 3899999999999975432 246
Q ss_pred EEEEeEEEEEc
Q 011364 103 ELKVNKIVLVG 113 (487)
Q Consensus 103 el~~~~i~vls 113 (487)
.+.+.++.-+.
T Consensus 1063 ~~~~~~~~~l~ 1073 (1151)
T PRK06826 1063 KLICEEIEPLV 1073 (1151)
T ss_pred EEEEeeeecHh
Confidence 77777776444
No 148
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=90.39 E-value=4.8 Score=35.35 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=52.0
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEe--eeec---CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEE
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~--~iR~---~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V 86 (487)
.+..|+.... ...++.|+|.|+|. ++.. ...+.|. |.|+. ..+.|+.....++ . ++.|.-|
T Consensus 37 ~t~se~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~--~~i~V~Y~G~~Pd-----~--F~eg~~V 102 (131)
T PF03100_consen 37 LTPSELAAEP----QKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGG--KEIPVVYTGPLPD-----L--FREGQGV 102 (131)
T ss_dssp E-TTTTTTTS----T-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT-----T----TTSEE
T ss_pred cCHHHHhhcc----ccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECC--cEEEEEECCCCCc-----c--ccCCCeE
Confidence 4566666542 24789999999998 6644 3578875 78886 4699988865442 2 7789999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEccCC
Q 011364 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 87 ~V~G~~~~~~~~~~~~el~~~~i~vls~~~ 116 (487)
.|+|++... + ..+++ +||.||+
T Consensus 103 Vv~G~~~~~--g----~F~A~--~lL~Kcp 124 (131)
T PF03100_consen 103 VVEGRLGED--G----VFEAT--ELLAKCP 124 (131)
T ss_dssp EEEEEECCT--S----EEEEE--EEEETS-
T ss_pred EEEEEECCC--C----EEEEE--EEEeCCC
Confidence 999998321 1 23444 5678885
No 149
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=90.24 E-value=0.92 Score=53.75 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=59.9
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|++.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+.... .|..|++|.|+|++.... +.+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~--~ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSE--ALEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999762 3 4999999999974 99999864 2444432 389999999999997642 357
Q ss_pred EEEEeEEEEEcc
Q 011364 103 ELKVNKIVLVGK 114 (487)
Q Consensus 103 el~~~~i~vls~ 114 (487)
.|.++++.-+.+
T Consensus 1048 qlii~~I~~L~~ 1059 (1135)
T PRK05673 1048 RLTAREVMDLEE 1059 (1135)
T ss_pred EEEEeecccHHH
Confidence 778777765543
No 150
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=89.99 E-value=4.4 Score=35.46 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=57.1
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeec-------CC--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------QS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~-------~g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
..+|+||... ...|.+.|.|.++.. .+ .+.-+.|.|.|| +|.+.+..... .. +.
T Consensus 4 ~~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG--~I~~tlW~~~a-----~~--l~ 66 (129)
T PRK06461 4 ITKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETG--RVKLTLWGEQA-----GS--LK 66 (129)
T ss_pred ceEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCC--EEEEEEeCCcc-----cc--CC
Confidence 4567788642 256889999985421 22 366678899997 48998887532 24 89
Q ss_pred CCcEEEEEe-eEeecCCCCceEEEEEeE---EEEEccC
Q 011364 82 TGASIWIQG-NVVPSQGSKQKVELKVNK---IVLVGKS 115 (487)
Q Consensus 82 ~gd~V~V~G-~~~~~~~~~~~~el~~~~---i~vls~~ 115 (487)
.||+|.|.+ .+.. -. +.++|.+.+ +..+.+.
T Consensus 67 ~GdvV~I~na~v~~-f~--G~lqL~i~~~~~i~~~~~~ 101 (129)
T PRK06461 67 EGEVVEIENAWTTL-YR--GKVQLNVGKYGSISESDDE 101 (129)
T ss_pred CCCEEEEECcEEee-eC--CEEEEEECCCEEEEECCcc
Confidence 999999995 5443 33 358888884 5555543
No 151
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.54 E-value=0.79 Score=47.57 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeec------cCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~------~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
+-+.+|..|++.+.+-|..+|..+|+||++-- ..+|...-.+ +... ..+
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiY---dlkD----------------------QGG 126 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIY---DLKD----------------------QGG 126 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeE---ehhh----------------------cCC
Confidence 35778999999999999999999999998753 2222221111 1110 001
Q ss_pred cccCcccccccchhhhHHHHhcc-CC--ceEEEecccccCCC-CCCcccccccceeeEEcc
Q 011364 220 DFFEKPAFLTVSGQLNAETYATA-LS--NVYTFGPTFRAENS-NTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 220 ~~~~~~~~L~~Spql~l~ll~~g-~~--kvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~ 276 (487)
.......-|+++=- |+++.. .. +-|+|+++||.+.. -|.=-.-||+|+|+-.++
T Consensus 127 El~SLRYDLTVPfA---RylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 127 ELCSLRYDLTVPFA---RYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred cEEEeecccccHHH---HHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 22222333444322 433332 22 45999999998753 133345699999998885
No 152
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=89.18 E-value=1.8 Score=51.08 Aligned_cols=77 Identities=16% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++. |+..+. .|..|.+|.|+|++.... +..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~~--y~~~~~-~l~~~~~~~v~G~v~~~~---~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPET--YIHFSD-KLQEGAIVLVDGTIELRN---HKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEecC---CcE
Confidence 46789999999998652 2 5999999999974 999988642 454432 389999999999997642 246
Q ss_pred EEEEeEEEEE
Q 011364 103 ELKVNKIVLV 112 (487)
Q Consensus 103 el~~~~i~vl 112 (487)
.+.++++.-+
T Consensus 1014 ~~~~~~i~~l 1023 (1107)
T PRK06920 1014 QWIVNGLYPL 1023 (1107)
T ss_pred EEEEeecccH
Confidence 6777776544
No 153
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=89.17 E-value=8.3 Score=30.83 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=47.1
Q ss_pred EEEEEEEeeee--c--CCC-eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC-CCcEEEEEeeEeecCCCCceEEEE
Q 011364 32 IVVAGWVRTLR--A--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (487)
Q Consensus 32 V~v~GwV~~iR--~--~g~-i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~-~gd~V~V~G~~~~~~~~~~~~el~ 105 (487)
|+|.|-|-.+- . .|+ +.-+.|.|.+.. +-|..-.. ...+.+.. |+ .|+.|.|.|.+....= .+++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f-~~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTF-SKELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccC-CCceEEE
Confidence 78899988762 2 344 444788999854 55544332 11223445 88 9999999999976642 2367776
Q ss_pred EeEEE
Q 011364 106 VNKIV 110 (487)
Q Consensus 106 ~~~i~ 110 (487)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 66554
No 154
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=89.14 E-value=0.23 Score=50.52 Aligned_cols=38 Identities=34% Similarity=0.729 Sum_probs=30.0
Q ss_pred HHHHhcCCC-CccceeccHHHHHHHHcCCCCcccccccCC
Q 011364 442 LDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPR 480 (487)
Q Consensus 442 l~~~~~G~p-P~~G~giGidRL~m~l~g~~~Irdv~~FPr 480 (487)
+.+.+||.| |.--.|+|+|||+|.|.|.++||.. .+|.
T Consensus 314 ~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 314 IALAEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred HHHHHcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 344567765 7788999999999999999999964 4443
No 155
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=87.93 E-value=3.2 Score=34.75 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=49.1
Q ss_pred CEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC-CC-
Q 011364 30 LMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ-GS- 98 (487)
Q Consensus 30 ~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~-~~- 98 (487)
..++|+|||.++ |. .|++.-++|.|..| +.|++.+...... ... ..|..|+++.++|--++.. ..
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~~--~f~-~~l~eG~vy~i~~~~V~~a~~~y 85 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAVD--KFY-DLLEVGKVYYISKGSVKVANKKF 85 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHHH--Hhh-cccccccEEEEeccEEeeccccC
Confidence 458999999853 32 26788889999954 4799999875422 111 1399999999998554432 21
Q ss_pred ---CceEEEEEe
Q 011364 99 ---KQKVELKVN 107 (487)
Q Consensus 99 ---~~~~el~~~ 107 (487)
...+||...
T Consensus 86 ~~~~~~yeI~f~ 97 (104)
T cd04474 86 NTLKNDYEITFN 97 (104)
T ss_pred CCCCCcEEEEEC
Confidence 235777654
No 156
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=87.06 E-value=0.72 Score=53.29 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=40.3
Q ss_pred ceEEEEEEecCeeeeechh-HhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCC-CccceeccHHHHHHHHcCCCCccc
Q 011364 397 TVAAMDMLVPRIGELIGGS-QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 397 ~~~~fdl~~~G~~El~~G~-~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~p-P~~G~giGidRL~m~l~g~~~Ird 474 (487)
--.|+|+++.|+ ||.|=- ++-++ + .| . |. =+| ++---|+|+|||++++-|.+|+=|
T Consensus 197 cGPcsEi~~~gl-EiwnlVFmqy~~-~--------~g-~---~~--------~Lp~k~VDTG~GLER~~~v~qg~~t~yd 254 (900)
T PRK13902 197 AGPCFEVLVRGL-ELATLVFMQYKK-D--------GN-R---YV--------EMPLKIVDTGYGLERIAWASQGTPTAYD 254 (900)
T ss_pred CCCceeeeeCCE-EeeeeeeeEEEc-C--------CC-e---ee--------eCCCCeeeCCcCHHHHHHHHcCCCchHH
Confidence 346788888898 999872 22111 0 11 0 00 033 555669999999999999999999
Q ss_pred ccccC
Q 011364 475 AIPFP 479 (487)
Q Consensus 475 v~~FP 479 (487)
+ .|+
T Consensus 255 t-~f~ 258 (900)
T PRK13902 255 A-IFG 258 (900)
T ss_pred H-HHH
Confidence 8 664
No 157
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=86.28 E-value=5.8 Score=40.27 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=52.8
Q ss_pred CEEEEEEEEeeee----cCCC-eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 011364 30 LMIVVAGWVRTLR----AQSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (487)
Q Consensus 30 ~~V~v~GwV~~iR----~~g~-i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el 104 (487)
+.|..-.-|.++. +.|+ ..-+.|.|.|| +|...+...... .... +..|++|.|.|++..-+. .+.+
T Consensus 12 ~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG--~I~ak~W~~~~~--~~~~--~~~g~vv~v~G~v~~y~g---~~Ql 82 (314)
T PRK13480 12 EQVDHFLLIKSATKGVASNGKPFLTLILQDKSG--DIEAKLWDVSPE--DEAT--YVPETIVHVKGDIINYRG---RKQL 82 (314)
T ss_pred CEeeEEEEEEEceeeecCCCCeEEEEEEEcCCc--EEEEEeCCCChh--hHhh--cCCCCEEEEEEEEEEECC---cceE
Confidence 4455444455443 2343 56677789997 499988765321 2345 999999999999987644 3667
Q ss_pred EEeEEEEEccCC
Q 011364 105 KVNKIVLVGKSD 116 (487)
Q Consensus 105 ~~~~i~vls~~~ 116 (487)
.+..+.++.+..
T Consensus 83 ~i~~i~~~~~~e 94 (314)
T PRK13480 83 KVNQIRLATEED 94 (314)
T ss_pred EEEEeEECCCCC
Confidence 888888887753
No 158
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=85.49 E-value=3.8 Score=48.01 Aligned_cols=74 Identities=14% Similarity=0.344 Sum_probs=54.6
Q ss_pred CCEEEEEEEEeeeec-----CC-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 29 GLMIVVAGWVRTLRA-----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~-----~g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
++.+.+.|+|.++|. .| .++|+.|.|.+|. +.+++-++. |+..+. .|..|.+|.|+|++.... +..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~~--y~~~~~-~l~~~~~~~v~G~v~~~~---~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPET--YRQYKD-ELKEGKFYYLKGKIQERD---GRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEecC---Cee
Confidence 456889999987763 22 4999999999974 999998653 444432 389999999999997642 246
Q ss_pred EEEEeEEE
Q 011364 103 ELKVNKIV 110 (487)
Q Consensus 103 el~~~~i~ 110 (487)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 67777664
No 159
>PRK14699 replication factor A; Provisional
Probab=84.66 E-value=5.2 Score=43.08 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCEEEEEEEEeeeec----------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCC
Q 011364 29 GLMIVVAGWVRTLRA----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~----------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~ 98 (487)
+..|+|.|+|.++-. .|++.=+.|.|++| .|.+++......+ ... +..|+.|.+.+.-.+-...
T Consensus 286 ~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG--~Ir~T~W~~~a~~--~~~--i~~Gd~v~i~~~y~~~~~~ 359 (484)
T PRK14699 286 MNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTG--KIRLTLWDEKTNF--LDE--IDFDETVEVLNAYSRENTF 359 (484)
T ss_pred CceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCC--eEEEEEeCccccc--ccc--cCCCceEEEEeEEEEeccC
Confidence 578999999997622 25666788999997 4999998764321 234 8899999988766554444
Q ss_pred CceEEEEEeEEEEEccCCC
Q 011364 99 KQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 99 ~~~~el~~~~i~vls~~~~ 117 (487)
.+.+||.+.+-.++.+|..
T Consensus 360 ~~~~eL~~~~~t~I~~~~~ 378 (484)
T PRK14699 360 SQQVELNLGARGIIQKSEK 378 (484)
T ss_pred CccEEEEecCceeEeecCC
Confidence 4579999998888888863
No 160
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=84.55 E-value=12 Score=28.10 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=37.8
Q ss_pred EEEEEeeeec----CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC
Q 011364 34 VAGWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 34 v~GwV~~iR~----~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
+.|.|.+++. .+++.-+.+.|+++ .+.++.-.... |. .+. ++.|+.+.|.|++....
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g--~i~~~~F~~~~-~~-~~~--~~~G~~~~v~Gkv~~~~ 62 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTG--TLTLVFFNFQP-YL-KKQ--LPPGTRVRVSGKVKRFR 62 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCC--EEEEEEECCCH-HH-Hhc--CCCCCEEEEEEEEeecC
Confidence 5566655432 13466677899986 48887765211 21 234 99999999999998753
No 161
>PRK07217 replication factor A; Reviewed
Probab=84.09 E-value=14 Score=37.14 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=67.1
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeee--ecCCCeEE-EEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~i--R~~g~i~F-i~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
.|+||.. .++-|+|.|+|.++ +.+.++.. -.|-|.|| +|..++..+.. ... |..|++|.+.
T Consensus 74 kI~Di~~--------~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG--~IkfT~W~~s~----~~~--leeGd~~rI~ 137 (311)
T PRK07217 74 NIADIDE--------PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETG--TIKFTKWAKSD----LPE--LEEGKSYLLK 137 (311)
T ss_pred eeeecCC--------CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCc--eEEEEEccCCC----CCc--ccCCCEEEEE
Confidence 4666653 45779999999988 44567777 56789997 48888876421 223 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCC
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~ 121 (487)
+..+..-.+ ..+|.+.+...+.+.+.++++
T Consensus 138 na~v~ey~G--~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 138 NVVTDEYQG--RFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred eEEEeeECC--EEEEEeCCceEEEeCCCCccc
Confidence 998876554 689999888887776655554
No 162
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=84.02 E-value=9 Score=30.31 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=38.6
Q ss_pred CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE-eeEeecCCCCceEEEEEeEE
Q 011364 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 45 g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~~~~~~~~~~~~el~~~~i 109 (487)
+++.=+.|.|.+| +|.+++..... ... +..|++|.++ |++..-+ +.++|.+.+.
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~ 76 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKN 76 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCc
Confidence 4566678899997 58998886542 234 9999999999 7776543 3577776653
No 163
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=83.50 E-value=2 Score=44.73 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-C---CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
-.+....|.+.+++.|...||..|+||+|...++ + | -.+.|.+++..
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~-------------------------- 69 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDET-------------------------- 69 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCC--------------------------
Confidence 4456677889999999999999999999998764 1 1 12356553221
Q ss_pred cccCcccccc--cchhhhH---HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCC----HHHHHHHHHHHH
Q 011364 220 DFFEKPAFLT--VSGQLNA---ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYL 290 (487)
Q Consensus 220 ~~~~~~~~L~--~Spql~l---~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e~li 290 (487)
+..+-|+ ..+++.. ..+...-.|+...|++||+.+.. ..-..||+|.=+|.=+.+ --+++.++-..+
T Consensus 70 ---g~~l~LRpD~T~pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~-~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L 145 (390)
T COG3705 70 ---GGRLGLRPDFTIPVARIHATLLAGTPLRLSYAGKVFRAREGR-HGRRAEFLQAGIELLGDDSAAADAEVIALALAAL 145 (390)
T ss_pred ---CCeEEecccccHHHHHHHHHhcCCCCceeeecchhhhcchhc-cCcccchhhhhhHHhCCCcchhhHHHHHHHHHHH
Confidence 1222222 1233332 23334467899999999988332 223359999988875432 124444444444
Q ss_pred H
Q 011364 291 Q 291 (487)
Q Consensus 291 ~ 291 (487)
+
T Consensus 146 ~ 146 (390)
T COG3705 146 K 146 (390)
T ss_pred H
Confidence 3
No 164
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=83.44 E-value=8.2 Score=38.06 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=53.5
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-chHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
..|.+-|||+++-....-++++|-|+++. |=|....... .-.+... |..|-+|.|.|.++.-.++ ..|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~Gk---~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQGK---KSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCCc---eeEEEEe
Confidence 45889999999998877778899999974 5555554321 1112335 9999999999999875433 5667666
Q ss_pred EE
Q 011364 109 IV 110 (487)
Q Consensus 109 i~ 110 (487)
|.
T Consensus 142 I~ 143 (265)
T KOG3108|consen 142 IR 143 (265)
T ss_pred ee
Confidence 65
No 165
>PRK12366 replication factor A; Reviewed
Probab=83.27 E-value=7.8 Score=43.33 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCCEEEEEEEEeeeec---------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC--
Q 011364 28 VGLMIVVAGWVRTLRA---------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ-- 96 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~---------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~-- 96 (487)
.|..++|.|||.++-. .|++-=+.|.|.+| .|++++.....+ .... |..|+++.+++-..+.-
T Consensus 290 ~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~d--~~~~--l~~G~vy~is~~~vk~y~~ 363 (637)
T PRK12366 290 DGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKAK--ILEN--LKEGDAVKIENCKVRTYYD 363 (637)
T ss_pred CCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchhh--hhcc--cCCCCEEEEecCEEeeccc
Confidence 4678999999998742 26788889999996 599999876432 2234 77999999999666621
Q ss_pred -CCCceEEEEEeEEEEEcc
Q 011364 97 -GSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 97 -~~~~~~el~~~~i~vls~ 114 (487)
.+...+||.+..-..+.+
T Consensus 364 ~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 364 NEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred cCCCcCEEEEcCCceEEEe
Confidence 233468888866554443
No 166
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=83.24 E-value=0.93 Score=47.49 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=33.7
Q ss_pred EEEEEEecCeee-eechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011364 399 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 468 (487)
Q Consensus 399 ~~fdl~~~G~~E-l~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g 468 (487)
--|+.|.+|.+. |++|+ ||+.+.+++ | +-.|..|||+|+|||+.++-+
T Consensus 281 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g---------------~~~pAvGfai~lerL~~~l~~ 329 (392)
T PRK12421 281 LVFAAYIPGRGQALARGG----RYDGIGEAF---G---------------RARPATGFSMDLKELLALQFL 329 (392)
T ss_pred CEEEEEECCCCCcccCCC----CccchhHhh---C---------------CCCCCceEEeeHHHHHhhccc
Confidence 358999998655 88887 344444433 2 124889999999999987644
No 167
>PRK07211 replication factor A; Reviewed
Probab=83.08 E-value=7.6 Score=41.64 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=57.4
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeec-----------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~-----------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
+|++|... ...|+|.|||.++-. .|++.=+.|-|.+| .|++++..+...- .... |.
T Consensus 55 ~I~dL~pg--------~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG--~Ir~TlW~d~ad~-~~~~--Le 121 (485)
T PRK07211 55 GIADIEPG--------MDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETG--SVRVAFWDEQAVA-AEEE--LE 121 (485)
T ss_pred cHhhCCCC--------CCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCC--eEEEEEechHhHh-hhcc--cC
Confidence 56666542 256999999987743 26888889999997 4999998754321 1224 99
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 82 TGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 82 ~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
.|+++.|.|.+++.- +.+||.+..+
T Consensus 122 ~GdV~~I~~~~~~~y---s~~El~i~~v 146 (485)
T PRK07211 122 VGQVLRIKGRPKDGY---NGLEVSVDKV 146 (485)
T ss_pred CCCEEEEeceEeccc---cceEEEEeeE
Confidence 999999999875332 3478887754
No 168
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=82.49 E-value=1.3 Score=46.36 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=32.2
Q ss_pred EEEEEEecCeee-eechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHH
Q 011364 399 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 465 (487)
Q Consensus 399 ~~fdl~~~G~~E-l~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~ 465 (487)
--|+.|.+|.|+ |++|+ ||+.+.+.+ |. -.|..||++|+|||+.+
T Consensus 274 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g~---------------~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 274 IVFEGYVDGVGNPIASGG----RYDDLLGRF---GR---------------ARPATGFSLDLDRLLEL 319 (391)
T ss_pred eEEEEEECCCCCcccCCc----chhhHHHHc---CC---------------CCCCceEEeeHHHHHhh
Confidence 458999987655 78887 455555444 21 23789999999999984
No 169
>PRK15491 replication factor A; Provisional
Probab=82.45 E-value=9.1 Score=39.86 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=57.1
Q ss_pred CEEEEEEEEeeeec-------CC---CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEee-EeecCCC
Q 011364 30 LMIVVAGWVRTLRA-------QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN-VVPSQGS 98 (487)
Q Consensus 30 ~~V~v~GwV~~iR~-------~g---~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~-~~~~~~~ 98 (487)
..|.|.|+|.++-. .| ++.=+.|-|.+| .+.+++.....++ +.. |..||+|.+.+. ++.+. -
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG--~Ir~t~W~~~a~~--~~~--l~~Gd~V~i~~~~~r~~~-~ 249 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETG--KIRVTLWDGKTDL--ADK--LENGDSVEIINGYARTNN-Y 249 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCC--eEEEEEecchhcc--ccc--CCCCCEEEEEeceEEEec-c
Confidence 45999999998853 23 455588899987 4999998764321 234 899999999774 54332 2
Q ss_pred CceEEEEEeEEEEEccCCC
Q 011364 99 KQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 99 ~~~~el~~~~i~vls~~~~ 117 (487)
.+.+||.+.+-..+.+|..
T Consensus 250 ~g~~El~~~~~s~I~~~~~ 268 (374)
T PRK15491 250 SQEVEIQIGNHGSLRKTDR 268 (374)
T ss_pred CCCEEEEeCCCceEEECCc
Confidence 3479999877777777753
No 170
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=81.90 E-value=6.4 Score=41.21 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=53.6
Q ss_pred CEEEEEEEEeeeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 30 LMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 30 ~~V~v~GwV~~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
..++|.|+|...-. -|+..|+.+.|+.| .|-+++-.....|.. ++. |.+||.|.+.|.++... |.+
T Consensus 267 ~~~~v~g~v~~~p~~ieGghv~v~i~d~~G--~I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~~-------~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEGGHVVVEITDGEG--EIGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPGT-------LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeCCEEEEEecCCCc--eEEEEEecccccchHHHHh--cCCCCEEEEecCccccc-------eeE
Confidence 45889998877633 58899999999997 477777654433433 567 99999999999987532 566
Q ss_pred eEEEEEcc
Q 011364 107 NKIVLVGK 114 (487)
Q Consensus 107 ~~i~vls~ 114 (487)
++++|+.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 66655443
No 171
>PLN02900 alanyl-tRNA synthetase
Probab=80.87 E-value=3.3 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.7
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv 475 (487)
++---|+|+|||++++-|.+|.=|+
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydt 263 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDT 263 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchh
Confidence 4555699999999999999998887
No 172
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=80.00 E-value=8.2 Score=40.71 Aligned_cols=75 Identities=11% Similarity=0.217 Sum_probs=55.9
Q ss_pred CEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 30 LMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
..|+|.|-|.+++... +-.|+.|.|.. ..|+|++.......-. -. +..|+-|-|.|.+.-=+.. |.+-|.+++
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~--A~i~c~mf~~~~~~l~-f~--p~eG~~V~v~G~is~Y~~r-G~YQi~~~~ 97 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDER--AQIRCVMFKGNNRRLK-FR--PEEGMQVLVRGKISLYEPR-GDYQIVAES 97 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCC--ceEEEEEEcCcccccC-CC--ccCCCEEEEEEEEEEEcCC-CceEEEEec
Confidence 5699999999998642 27889999998 4699998875421100 13 7889999999998765433 368888887
Q ss_pred EE
Q 011364 109 IV 110 (487)
Q Consensus 109 i~ 110 (487)
++
T Consensus 98 ~~ 99 (440)
T COG1570 98 ME 99 (440)
T ss_pred CC
Confidence 76
No 173
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=79.57 E-value=15 Score=41.37 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCCCEEEEEEEEeeeecC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEE
Q 011364 27 RVGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~e 103 (487)
..|+.|+|.|.|.+.+.. +++.-+.+.|++| .++++.-.-...|- .+. +++|+.+.|+|++..... .++
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg--~i~l~~F~~n~~~~-~~~--l~~G~~~~v~Gkv~~~~~---~~q 128 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTG--NLTLRFFNFNQPYL-KKQ--LKVGKRVAVYGKVKRGKY---GLE 128 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCe--EEEEEEEccCcHHH-Hhh--CCCCCEEEEEEEEEecCC---eEE
Confidence 347899999999887533 3567778899986 48887763111221 234 999999999999987322 355
Q ss_pred EEEeEEEE
Q 011364 104 LKVNKIVL 111 (487)
Q Consensus 104 l~~~~i~v 111 (487)
+.--++.+
T Consensus 129 m~~P~~~~ 136 (681)
T PRK10917 129 MVHPEYEV 136 (681)
T ss_pred EEcCEEEe
Confidence 54444433
No 174
>PRK07080 hypothetical protein; Validated
Probab=79.50 E-value=2.5 Score=42.57 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=37.7
Q ss_pred ceEE-EecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHH
Q 011364 245 NVYT-FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 293 (487)
Q Consensus 245 kvfe-I~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~ 293 (487)
++|. .|.|||+|++.+.+-+-||+|-|+-.- .+-+++.+.-++.+...
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~i-Gt~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRI-GTPEQIVAFRQSWIERG 201 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEe-cCHHHHHHHHHHHHHHH
Confidence 6666 599999999988888899999999775 47777777666665554
No 175
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=79.26 E-value=2.4 Score=42.96 Aligned_cols=47 Identities=34% Similarity=0.657 Sum_probs=33.1
Q ss_pred EEEEEEecCeee-eechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011364 399 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 467 (487)
Q Consensus 399 ~~fdl~~~G~~E-l~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~ 467 (487)
-=|++|.+|.++ |++|+ ||+.+.+.+ |. ..|..||++|+|||+.++.
T Consensus 266 ivFe~~~~~~~~~i~~GG----RYD~L~~~f---g~---------------~~~AvGfa~~~d~l~~~l~ 313 (314)
T TIGR00443 266 LIFEGYAPGLGAPIAGGG----RYDNLLGRF---GR---------------PLPATGFALNLERLLEALT 313 (314)
T ss_pred eEEEEEECCCCCcccCCc----cHHHHHHHc---CC---------------CCCCceEEecHHHHHHHhc
Confidence 348889887655 77777 455555444 21 2388999999999998764
No 176
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=78.77 E-value=12 Score=29.19 Aligned_cols=47 Identities=13% Similarity=0.279 Sum_probs=34.5
Q ss_pred EEEEEEeeeecCCCeEEEEEE-cCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEe
Q 011364 33 VVAGWVRTLRAQSSVTFIEVN-DGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lr-D~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (487)
.+.|+|.++.++| +|+++- ++ +...++.+...++ .. +++|+.|.+.=
T Consensus 7 ~v~g~V~si~d~G--~~v~~g~~g-----v~Gfl~~~~~~~~--~~--~~~Gq~v~~~V 54 (74)
T cd05694 7 VLSGCVSSVEDHG--YILDIGIPG-----TTGFLPKKDAGNF--SK--LKVGQLLLCVV 54 (74)
T ss_pred EEEEEEEEEeCCE--EEEEeCCCC-----cEEEEEHHHCCcc--cc--cCCCCEEEEEE
Confidence 5999999999999 899983 22 5667776543322 34 89999988874
No 177
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=78.48 E-value=12 Score=39.72 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCEEEEEEEEeeeecC-CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~~-g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
-..|+|.|=|.+.+.+ ++-+|+.|.|.. ..|-||+..... ..+.. .++.|+-|.|.|.+.--+.. +.+.|.+.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~--a~i~~~~~~~~~--~~~~~-~~~~G~~v~v~g~~~~y~~~-g~~ql~v~ 96 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEI--AQIRCVMFKGSA--RRLKF-KPEEGMKVLVRGKVSLYEPR-GDYQLIVE 96 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCC--cEEEEEEEcChh--hcCCC-CCCCCCEEEEEEEEEEECCC-CCEEEEEE
Confidence 4679999999999765 457889999997 469999987642 11211 28899999999999854322 36999999
Q ss_pred EEEEEc
Q 011364 108 KIVLVG 113 (487)
Q Consensus 108 ~i~vls 113 (487)
+|...+
T Consensus 97 ~i~~~g 102 (438)
T PRK00286 97 EIEPAG 102 (438)
T ss_pred EeeeCC
Confidence 988644
No 178
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=78.46 E-value=2.1 Score=45.93 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=24.7
Q ss_pred ceEEEecccccCCCCCCc----ccccccceeeEEccCCH
Q 011364 245 NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADL 279 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~ 279 (487)
-+-|||++||||= ++| -.-||+|+|+|. |++-
T Consensus 167 giaQIGk~FRNEI--sPr~~l~R~REF~q~EiE~-Fv~P 202 (539)
T PRK14894 167 GIAQVGKAFRNEI--NPRNFLFRVREFEQMEIEY-FVMP 202 (539)
T ss_pred eEEeeeccccCcc--CCCCceeecccchhheEEE-EeCC
Confidence 4899999999993 344 357999999987 5543
No 179
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.31 E-value=5.2 Score=41.77 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~ 179 (487)
.+...+-..++++.-+|+.++||+-+.||.+....
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rke 216 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRKE 216 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHH
Confidence 35667778899999999999999999999998854
No 180
>PRK07218 replication factor A; Provisional
Probab=78.09 E-value=16 Score=38.69 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=56.7
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeec--------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA--------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~--------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~ 82 (487)
..+|+||... ++.|.|.|+|-++-. -|.+.=+.|-|.|| ++.+++.... . |..
T Consensus 58 ~~kI~Di~~~--------~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG--~Ir~tlW~~~-------~--l~~ 118 (423)
T PRK07218 58 SKDIKELSTD--------DKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETG--TISYTAWKDF-------G--LSP 118 (423)
T ss_pred CccHhhCCCC--------CceeEEEEEEEEecceeEecCCCceEEEEEEEECCCC--eEEEEEECCC-------C--CCC
Confidence 3557777542 477999999998831 24566667778876 4777777631 3 999
Q ss_pred CcEEEEEeeEeecCCCCceEEEEEeEEEEEcc
Q 011364 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 83 gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~ 114 (487)
||+|.+.+-..+.-. +.++|.+.+-.-+.+
T Consensus 119 Gdvv~I~na~vre~~--g~~el~ig~~t~I~~ 148 (423)
T PRK07218 119 GDTVTIGNAGVREWD--GRPELNIGESTTVSL 148 (423)
T ss_pred CCEEEEeccEeeccC--CceEEeccCcceEEE
Confidence 999999987666543 358888765444443
No 181
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=76.53 E-value=14 Score=39.20 Aligned_cols=76 Identities=13% Similarity=0.306 Sum_probs=56.6
Q ss_pred CEEEEEEEEeeeecC-CCeEEEEEEcCCCCeeeEEEEeCCccchHhHh-ccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 30 LMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVK-SGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~-g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~-~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
..|+|.|=|.+.+.+ .+-+|+.|.|.. ..|.||+..... ..++ . +..|+-|.|.|.+.--+.. |.+.|.|+
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~--a~i~~vmf~~~~--~~l~f~--~~~G~~V~v~g~v~~y~~~-G~~ql~v~ 90 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDEN--AQVRCVMFRGNN--NRLKFR--PQNGQQVLVRGGISVYEPR-GDYQIICF 90 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCC--cEEEEEEEcChh--hCCCCC--CCCCCEEEEEEEEEEECCC-CcEEEEEE
Confidence 379999999999764 346788999987 469999987642 1111 3 7899999999999654332 36899999
Q ss_pred EEEEE
Q 011364 108 KIVLV 112 (487)
Q Consensus 108 ~i~vl 112 (487)
+++-.
T Consensus 91 ~i~~~ 95 (432)
T TIGR00237 91 EMQPA 95 (432)
T ss_pred EeccC
Confidence 88753
No 182
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=75.38 E-value=50 Score=30.03 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=53.3
Q ss_pred CCCCEEEEEEEEe--eeecCC---CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCce
Q 011364 27 RVGLMIVVAGWVR--TLRAQS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (487)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~g---~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~ 101 (487)
..++.++|.|.|. ++...+ .+.| .|.|+. .++.|....-.++ +++.|.-|.|+|++... +
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~--~~v~V~Y~GilPD-------lFrEG~gVVveG~~~~~--g--- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAE--GSVTVSYEGILPD-------LFREGQGVVVQGTLEKG--N--- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCC--cEEEEEEeccCCc-------cccCCCeEEEEEEECCC--C---
Confidence 4689999999999 776643 4677 589987 4588877654432 27789999999999643 1
Q ss_pred EEEEEeEEEEEccCCCCC
Q 011364 102 VELKVNKIVLVGKSDPSY 119 (487)
Q Consensus 102 ~el~~~~i~vls~~~~~~ 119 (487)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~evLAKhdekY 134 (159)
T PRK13150 120 -HVLA--HEVLAKHDENY 134 (159)
T ss_pred -EEEE--eEEEeCCCCCC
Confidence 1333 36889997553
No 183
>PRK12366 replication factor A; Reviewed
Probab=74.95 E-value=14 Score=41.42 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=59.0
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeee---e----c---CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R----~---~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L 80 (487)
-+.|++|... ...|+|.|||.++ | . -|++.=+.|-|.+| ++.+++......+ +.. |
T Consensus 63 ~~~I~dl~p~--------~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG--~Ir~t~W~~~~~~--~~~--l 128 (637)
T PRK12366 63 DFKISDIEEG--------QINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTG--TIRLTLWNDNAKL--LKG--L 128 (637)
T ss_pred eeEHHHCcCC--------CcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCC--EEEEEEEchhhhh--hcc--C
Confidence 4567777653 2569999999766 3 1 25678889999997 5999998765432 345 9
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 81 TTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 81 ~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
..|+++.+.|-..+.-. +.+||....
T Consensus 129 e~G~v~~i~~~~v~~~~--~~~el~~~~ 154 (637)
T PRK12366 129 KEGDVIKIENARSRKWN--NDVELNSGS 154 (637)
T ss_pred CCCCEEEEeccEecccC--CceEEEcCC
Confidence 99999999997665433 357876653
No 184
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=74.94 E-value=16 Score=40.14 Aligned_cols=116 Identities=10% Similarity=0.127 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--CCC---CCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDC--EGA---GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--eg~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
....+.+.+|++|...||.|+-|-.+++..- +.. .+.+ +.=.|| ++ .++
T Consensus 363 ~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~-v~l~NP------------is----------~e~--- 416 (551)
T TIGR00471 363 PLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNND-VKVANP------------KT----------LEY--- 416 (551)
T ss_pred hHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCc-EEeCCC------------Cc----------hhh---
Confidence 3456778899999999999999999987521 100 0000 111121 11 111
Q ss_pred ccccccchhhhH-HHHhcc---C--CceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHH
Q 011364 225 PAFLTVSGQLNA-ETYATA---L--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 293 (487)
Q Consensus 225 ~~~L~~Spql~l-~ll~~g---~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~ 293 (487)
-+|++|-=--+ +.+... . -|+||||+||...+. +..+-.++.++-+-.+. .|+.++...+|.++..+
T Consensus 417 -s~lR~SLlp~LL~~~~~N~~~~~~~~lFEiG~Vf~~~~~-~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l 491 (551)
T TIGR00471 417 -TIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDK-SETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL 491 (551)
T ss_pred -hHhHhhhHHHHHHHHHhcccCCCCeeEEEEEEEEEcCCc-cccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 13444422222 332222 1 279999999965422 11233445677666654 37888888888888643
No 185
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=74.88 E-value=5.3 Score=46.11 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.0
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv 475 (487)
+|---|+|+|||++++-|.+|.=|+
T Consensus 213 ~~IDTGmGLERl~~vlqg~~snydt 237 (851)
T TIGR00344 213 KNIDTGMGLERFVAVLQGVPTNYDT 237 (851)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchh
Confidence 5556799999999999999998887
No 186
>PRK00036 primosomal replication protein N; Reviewed
Probab=74.06 E-value=12 Score=31.64 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=38.3
Q ss_pred eeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccC
Q 011364 60 NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 60 ~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~ 115 (487)
.||+++.... .+.+.. ++.|+-|.|+|.+..+..+...+=+|++.|+.+.+.
T Consensus 48 ~i~ava~G~~--a~~~~~--l~~Gs~v~v~GFLa~~~~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 48 TISAVALGDL--ALLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEhhH--HHHhcc--cCCCCEEEEEEEEEECCCCCCcEEEEhHHeEEcccc
Confidence 3666666531 233456 999999999999997555555788999999988554
No 187
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=73.73 E-value=54 Score=28.29 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=35.6
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----C-CC--ceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----G-SK--QKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~-~~--~~~el~~~~i~vls~~ 115 (487)
+.|++-...... ..+. |+.||-|.|+|.+.... . +. ...||.+++|++|++.
T Consensus 46 ~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 46 FNLEIWGKTAQV-AADY--VKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred EEEEEehHHHHH-HHHH--cCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 667666542211 1234 99999999999998652 1 21 2588999999999854
No 188
>PRK02801 primosomal replication protein N; Provisional
Probab=73.59 E-value=13 Score=30.95 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=33.6
Q ss_pred eEEEEeCCccchHhH-hccCCCCCcEEEEEeeEee--cCCCCceEEEEEeEEEEE
Q 011364 61 MQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVP--SQGSKQKVELKVNKIVLV 112 (487)
Q Consensus 61 lQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~~~~--~~~~~~~~el~~~~i~vl 112 (487)
++|++..+.. +.+ +. |..|+-|.|+|.+.. ++.+...+.|+++.++.+
T Consensus 50 i~~va~G~~A--e~~~~~--l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQF--QAITQS--ITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHH--HHHHhh--cCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 7787776432 223 35 999999999999986 333434567888888765
No 189
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=73.59 E-value=58 Score=29.65 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=52.7
Q ss_pred CCCCEEEEEEEEe--eeecC-C--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCce
Q 011364 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (487)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~-g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~ 101 (487)
..++.++|.|.|. ++... + .+.| .|.|+. .++.|....-.++ +++.|.-|.|+|++... +
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~--~~v~V~Y~GilPD-------lFrEG~gVVveG~~~~~--g--- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAG--GSVTVTYEGILPD-------LFREGQGIVAQGVLEEG--N--- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCC--eEEEEEEcccCCc-------cccCCCeEEEEEEECCC--C---
Confidence 4689999999999 77654 3 3677 588986 4688877654332 27789999999999642 1
Q ss_pred EEEEEeEEEEEccCCCCC
Q 011364 102 VELKVNKIVLVGKSDPSY 119 (487)
Q Consensus 102 ~el~~~~i~vls~~~~~~ 119 (487)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~~vLAKhdekY 134 (160)
T PRK13165 120 -HIEA--KEVLAKHDENY 134 (160)
T ss_pred -eEEE--EEEEecCCCCC
Confidence 2233 36789997553
No 190
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=73.50 E-value=6.2 Score=46.37 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeec-cCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITA-SDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~-~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
-..=.+|..+...+.+.|.++|++|++||-+.. ++|. +..+...+=++ .| .--
T Consensus 929 ~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~-------------------sG------~~v 983 (1351)
T KOG1035|consen 929 EINNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDH-------------------SG------DVV 983 (1351)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecC-------------------CC------CEE
Confidence 344567888999999999999999999996554 2331 11122211111 11 111
Q ss_pred CcccccccchhhhHHHHhcc---CCceEEEecccccCCCCCCcccccccceeeEEccCC----HHHHHHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQLNAETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYV 293 (487)
Q Consensus 223 ~~~~~L~~Spql~l~ll~~g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e~li~~~ 293 (487)
..|.-|++- +-+.++.. .-|-|+|++|||.+. .+ |.-|++.+++-.-..+ -.|++.++-+++..+
T Consensus 984 ~Lp~DLr~p---far~vs~N~~~~~Kry~i~rVyr~~~--~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~ 1055 (1351)
T KOG1035|consen 984 ELPYDLRLP---FARYVSRNSVLSFKRYCISRVYRPAI--HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEI 1055 (1351)
T ss_pred Eeeccccch---HHHHhhhchHHHHHHhhhheeecccc--cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHH
Confidence 223333321 11222221 246799999999987 34 9999999998765543 246777777777663
No 191
>PRK07211 replication factor A; Reviewed
Probab=73.11 E-value=20 Score=38.51 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=56.5
Q ss_pred CCEEEEEEEEeeeec-------C---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEe-eEeecCC
Q 011364 29 GLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQG 97 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~-------~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G-~~~~~~~ 97 (487)
...|.|.|+|.++-. . |++.=+.|-|.+| +|.+++..+... .+.. |..|++|.|.| ++...
T Consensus 171 ~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG--~IR~TlW~d~Ad--~~~~--le~G~Vv~I~~a~Vre~-- 242 (485)
T PRK07211 171 LSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETG--RVRVTLWDDRAD--LAEE--LDAGESVEIVDGYVRER-- 242 (485)
T ss_pred CCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCC--eEEEEEechhhh--hhcc--CCCCCEEEEEeeEEEec--
Confidence 466899999985522 2 3666688999997 499999876432 1235 89999999975 55443
Q ss_pred CCceEEEEEeEEEEEccCC
Q 011364 98 SKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 98 ~~~~~el~~~~i~vls~~~ 116 (487)
.+.+||.+..-..+.++.
T Consensus 243 -~g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 243 -DGSLELHVGDRGAVEEVD 260 (485)
T ss_pred -CCcEEEEECCCceEEECC
Confidence 246999988777777765
No 192
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=72.76 E-value=3.6 Score=41.04 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.0
Q ss_pred EEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011364 399 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 467 (487)
Q Consensus 399 ~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~ 467 (487)
--|+.|.+|. .|++|+.-. +. --|..|||+|+|||+.+|.
T Consensus 241 ivFe~~~~~~-~i~~GGRYD-------------~~---------------~~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 241 LFFRFFDGNS-TLASGGNYE-------------ID---------------GISSSGFALYTDNLIEILL 280 (281)
T ss_pred eEEEEEECCc-eeccccCCC-------------CC---------------CCCcceEEeeHHHHHHHhh
Confidence 4599999985 899998554 00 1288999999999998875
No 193
>PRK07218 replication factor A; Provisional
Probab=72.62 E-value=38 Score=35.89 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=54.2
Q ss_pred CCEEEEEEEEeee--ec-----C-CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCc
Q 011364 29 GLMIVVAGWVRTL--RA-----Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (487)
Q Consensus 29 ~~~V~v~GwV~~i--R~-----~-g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~ 100 (487)
...|+|.|+|.++ |. . +.+.=..|-|.|| +|.+++.... .. |..||+|.|.+...+...+
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG--~Ir~tlW~~~------~~--l~~Gd~v~I~na~v~e~~G-- 239 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETG--RLPFTDWDPL------PE--IEIGASIRIEDAYVREFRG-- 239 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCc--eEEEEEeccc------cc--CCCCCEEEEeeeEEeccCC--
Confidence 3558999999877 21 1 2233345778886 4788777642 24 9999999999988876544
Q ss_pred eEEEEEeEEEEEccCCCCCC
Q 011364 101 KVELKVNKIVLVGKSDPSYP 120 (487)
Q Consensus 101 ~~el~~~~i~vls~~~~~~p 120 (487)
.+||.+.+-.-+...+.+.+
T Consensus 240 ~~elnv~~~t~I~~~d~~i~ 259 (423)
T PRK07218 240 VPSVNVSEFTTVEALDREVS 259 (423)
T ss_pred eEEEEECCceEEEECCCCcc
Confidence 78999986655555443333
No 194
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.31 E-value=24 Score=40.57 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.3
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccC
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDAIPFP 479 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv~~FP 479 (487)
|+-==|+|+|||+..+-|.+|.=|+.+|.
T Consensus 223 k~IDTGmGLERi~~vlQ~~~tnyd~dlf~ 251 (879)
T COG0013 223 KNIDTGMGLERIAAVLQGVPTNYDTDLFR 251 (879)
T ss_pred CCcccCccHHHHHHHHcCCCcchhhhhhH
Confidence 33345999999999999999999988774
No 195
>PRK06386 replication factor A; Reviewed
Probab=71.89 E-value=45 Score=34.49 Aligned_cols=87 Identities=13% Similarity=0.139 Sum_probs=58.8
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeeec-------C-CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~-------~-g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~g 83 (487)
.+|+||... ...|.|.|+|..+-. . +.+.=+.|-|.|| +|.+++..+ . |..|
T Consensus 108 ~KI~DL~~g--------~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTG--rIr~TlW~~--------~--l~eG 167 (358)
T PRK06386 108 VKIRDLSLV--------TPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTA--RVRISSFGK--------P--LEDN 167 (358)
T ss_pred cEeEeccCC--------CCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCC--eEEEEEccc--------c--ccCC
Confidence 456666432 355788888876521 1 3455556677775 377766642 4 8999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCC
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p 120 (487)
|+|.+.+....... +.+||.+.+...+.+.+.+..
T Consensus 168 d~v~i~na~v~e~~--G~~el~v~~~t~I~~~~~~ie 202 (358)
T PRK06386 168 RFVRIENARVSQYN--GYIEISVGNKSVIKEVESDIN 202 (358)
T ss_pred CEEEEeeeEEEccC--CeEEEEeCCeEEEEECCCCcc
Confidence 99999998876654 479999999888877654333
No 196
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.66 E-value=25 Score=39.14 Aligned_cols=93 Identities=12% Similarity=0.205 Sum_probs=63.3
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L 80 (487)
-+.|++|... ....+|+|||.++ |. .|++--++|.|.++ .|++.+.....+ |. .. |
T Consensus 180 ~~pI~~L~py--------~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg--~Irat~f~~~~dkf~--~~--l 245 (608)
T TIGR00617 180 VMPIASLSPY--------QNKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESG--EIRATAFNEQADKFY--DI--I 245 (608)
T ss_pred eEEHHHCCCC--------CCceEEEEEEEeccccceecCCCCCceeeEEEEecCCC--eEEEEECchHHHHHh--hh--c
Confidence 4567777653 2458999999764 32 25777788999654 599998876432 21 23 8
Q ss_pred CCCcEEEEEe-eEeecCC----CCceEEEEEeEEEEEccCCC
Q 011364 81 TTGASIWIQG-NVVPSQG----SKQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 81 ~~gd~V~V~G-~~~~~~~----~~~~~el~~~~i~vls~~~~ 117 (487)
..|+++.+++ .|+.... ....+||...+-+++.+|..
T Consensus 246 ~eG~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~d 287 (608)
T TIGR00617 246 QEGKVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECED 287 (608)
T ss_pred ccCCEEEECceEEEEccccccCCCCCEEEEECCCeEEEECCC
Confidence 9999999966 5554322 13469999988888887753
No 197
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=70.17 E-value=6.3 Score=41.82 Aligned_cols=18 Identities=39% Similarity=0.754 Sum_probs=15.7
Q ss_pred CccceeccHHHHHHHHcC
Q 011364 451 PHAGFGLGFERLVQFATG 468 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g 468 (487)
|..||++|+|||++++..
T Consensus 300 PavGfa~g~erl~~~l~~ 317 (430)
T CHL00201 300 PAVGCAIGLERLLLIAKD 317 (430)
T ss_pred CeeEEEecHHHHHHHHhc
Confidence 777999999999998754
No 198
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=69.93 E-value=33 Score=27.84 Aligned_cols=60 Identities=12% Similarity=0.231 Sum_probs=43.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCC
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~ 97 (487)
.+.|.|++++..+.=+|+.|+|.+| .+++.+..+.. +.- ...|..|+++-.+-.-.-+++
T Consensus 6 ~l~v~Iks~~~~~~D~~v~l~DpTG--~i~~tiH~~v~--~~y-~~~l~~GavLlLk~V~Vf~ps 65 (86)
T PF15072_consen 6 CLVVIIKSIVPSSEDAFVVLKDPTG--EIRGTIHRKVL--EEY-GDELSPGAVLLLKDVTVFSPS 65 (86)
T ss_pred EEEEEEEEeeccCCCeEEEEECCCC--cEEEEEeHHHH--hhc-CCccccCEEEEEeeeeEEecC
Confidence 5889999999887778999999997 49999986531 111 113888888887765444433
No 199
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=68.79 E-value=88 Score=28.11 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=56.5
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEe--eeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEE
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~--~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (487)
+..|+... ....++.|+|.|+|. ++.. .+.+.|. |.|+. ..+.|......++ . ++-|.-|.|
T Consensus 39 tpse~~~~----~~~~g~~vrvgG~V~~gSi~~~~~~~~~F~-ltD~~--~~i~V~Y~G~lPd-----~--F~eg~~VVv 104 (148)
T PRK13254 39 TPSEVAEG----EAPAGRRFRLGGLVEKGSVQRGDGLTVRFV-VTDGN--ATVPVVYTGILPD-----L--FREGQGVVA 104 (148)
T ss_pred CHHHHhcC----CccCCCeEEEeEEEecCcEEeCCCCEEEEE-EEeCC--eEEEEEECCCCCc-----c--ccCCCEEEE
Confidence 34555443 125689999999995 4543 3568884 79985 4688877754432 2 778999999
Q ss_pred EeeEeecCCCCceEEEEEeEEEEEccCCCCC
Q 011364 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSY 119 (487)
Q Consensus 89 ~G~~~~~~~~~~~~el~~~~i~vls~~~~~~ 119 (487)
+|++... + ..+++ +||.||+..|
T Consensus 105 ~G~~~~~--g----~F~A~--~vLaKc~skY 127 (148)
T PRK13254 105 EGRLQDG--G----VFVAD--EVLAKHDENY 127 (148)
T ss_pred EEEECCC--C----eEEEE--EEEecCCCCC
Confidence 9998532 1 23444 5788887443
No 200
>PLN02734 glycyl-tRNA synthetase
Probab=65.76 E-value=2.1 Score=47.60 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=24.9
Q ss_pred ceEEEecccccCCCCCCc----ccccccceeeEEccCCH
Q 011364 245 NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADL 279 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~ 279 (487)
-+-|||++||||= ++| -+-||+|.|+|. |.+-
T Consensus 277 ~~AQIGk~FRNEI--sPR~gl~R~REF~qaEiE~-Fv~P 312 (684)
T PLN02734 277 AAAQIGQAFRNEI--SPRQGLLRVREFTLAEIEH-FVDP 312 (684)
T ss_pred eeeeccHhhhccc--Ccccceeeechhhhhhhhe-ecCc
Confidence 4789999999993 344 357999999987 6554
No 201
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=65.75 E-value=19 Score=42.11 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=49.0
Q ss_pred CCEEEEEEEEeeeecC---C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC
Q 011364 29 GLMIVVAGWVRTLRAQ---S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~~---g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
++.|+|.|.|.++|.. | .++|+.+.|.+| .+.+++-++ .|+..+. |..++++.|+|+..++.
T Consensus 897 ~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~--~~e~~~F~~--~~~~~~~--l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 897 NTEYRLAIEVKNVKRLRKANKEYKKVILSDDSV--EITIFVNDN--DYLLFET--LKKGDIYEFLISKSKNN 962 (973)
T ss_pred CCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCC--cEEEEEcHH--HHHHHHH--hhcCCEEEEEEEEcCCC
Confidence 4678999999987652 3 599999999997 499988764 3555666 88899999999887653
No 202
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=64.85 E-value=49 Score=32.01 Aligned_cols=125 Identities=11% Similarity=0.082 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cccCcc
Q 011364 152 NALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEKP 225 (487)
Q Consensus 152 s~i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 225 (487)
.+.+..|+++|. +.+.+.|..|+++....+ -.+-+.-+.. |+ .++. +.-+..
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sG-lNDnLnG~Er----------pV-----------sF~~k~~~~~~ 64 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSG-LNDNLNGVER----------PV-----------SFDIKDIPDET 64 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS--S--TTST-------------------------EE--TTSTT--
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCC-CcCCCCCeEe----------eE-----------EEEccCCCCce
Confidence 556777777775 479999999999986442 1111110000 00 0000 111333
Q ss_pred cccccchhhhHHHHhc--cC---CceEEEecccc-cCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhh
Q 011364 226 AFLTVSGQLNAETYAT--AL---SNVYTFGPTFR-AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298 (487)
Q Consensus 226 ~~L~~Spql~l~ll~~--g~---~kvfeI~~~FR-~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~ 298 (487)
+-..+|--=|||+... +| +.+|+=..+.| .|+.-+..|.-=.-|-|||.....-+.-++...+.++.+...+.
T Consensus 65 ~EIVhSLAKWKR~aL~~y~f~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik 143 (244)
T PF03590_consen 65 AEIVHSLAKWKRMALKRYGFPPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIK 143 (244)
T ss_dssp EEE-S--TTHHHHHHHHTT--TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHcCCCCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHH
Confidence 4445666666775443 55 47999999999 87644799999999999999876555556666666666665554
No 203
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=64.32 E-value=49 Score=36.99 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCCCEEEEEEEEeeeec----CCCeEEEEEEc-CCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC
Q 011364 27 RVGLMIVVAGWVRTLRA----QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~----~g~i~Fi~lrD-~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
..|+.++|.|.|.+... ..++.-+.+.| +++ .+.+++-.. .|- .+. +++|+.+.|.|++....
T Consensus 30 ~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~F~~--~~~-~~~--~~~g~~~~~~Gk~~~~~ 97 (630)
T TIGR00643 30 LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYK--KLELRFFNR--AFL-KKK--FKVGSKVVVYGKVKSSK 97 (630)
T ss_pred CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCC--EEEEEEECC--HHH-Hhh--CCCCCEEEEEEEEEeeC
Confidence 35788999999876421 13456677899 775 488877652 121 234 99999999999998653
No 204
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=64.30 E-value=7.8 Score=40.97 Aligned_cols=50 Identities=14% Similarity=0.373 Sum_probs=33.1
Q ss_pred EEEEEecC--e-eeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011364 400 AMDMLVPR--I-GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 468 (487)
Q Consensus 400 ~fdl~~~G--~-~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g 468 (487)
-|++|.++ . ..|++|+ ||+.+.+.+...+. ..|..||++|+|||+..+..
T Consensus 279 vFe~~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~---------------~~pAvGfa~~~~~l~~~l~~ 331 (423)
T PRK12420 279 VYEIFLKDGSITSSIGSGG----RYDNIIGAFRGDDM---------------NYPTVGISFGLDVIYTALSQ 331 (423)
T ss_pred EEEEEecCCCccccccCCc----cHHHHHHHhCCCCC---------------CCCceeEEEcHHHHHHHHHh
Confidence 59999875 2 2588887 45555444421111 23789999999999988764
No 205
>PRK08402 replication factor A; Reviewed
Probab=63.62 E-value=41 Score=34.79 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=56.1
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeee---ec----CC---CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R~----~g---~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
..|+||... .+.|++.|+|.++ |. .| ++.=+.|-|.|| ++.+++...... +.+.. |.
T Consensus 63 ~kI~dl~~g--------~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG--~ir~TlW~~~a~-~~~~~--l~ 129 (355)
T PRK08402 63 MHISDLVPG--------MRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTG--RARVVLWDAKVA-KYYNK--IN 129 (355)
T ss_pred cCHHHccCC--------CceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCC--eEEEEEechhhh-hhccc--CC
Confidence 457777542 3679999999987 31 22 344478999997 488988875421 01234 89
Q ss_pred CCcEEEEEeeEeec-CCCCceEEEEEeEEEEE
Q 011364 82 TGASIWIQGNVVPS-QGSKQKVELKVNKIVLV 112 (487)
Q Consensus 82 ~gd~V~V~G~~~~~-~~~~~~~el~~~~i~vl 112 (487)
.||+|.|.|--++. ..+ ..||.+.+-..+
T Consensus 130 ~Gdvi~I~~a~V~e~~~G--~~eLsvg~~s~i 159 (355)
T PRK08402 130 VGDVIKVIDAQVRESLSG--LPELHINFRARI 159 (355)
T ss_pred CCCEEEEECCEEeecCCC--cEEEEECCCceE
Confidence 99999998654443 233 468888655433
No 206
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=63.21 E-value=34 Score=38.04 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeecc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITAS 178 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~ 178 (487)
..++.+.+|+.|...||.||-|-.|++.
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~ 426 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSH 426 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCCh
Confidence 4567778899999999999999999875
No 207
>COG3689 Predicted membrane protein [Function unknown]
Probab=62.38 E-value=34 Score=33.51 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=57.2
Q ss_pred CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc----chHhHhccCCCCCcEEEEEeeEeecCCC-
Q 011364 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASIWIQGNVVPSQGS- 98 (487)
Q Consensus 24 ~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~----~~~~~~~~~L~~gd~V~V~G~~~~~~~~- 98 (487)
..+..|++|.+.|.|-+=-..++--++..|=+ . +=|++++..- ..+.... ++..++|.|+|++....-.
T Consensus 170 pdef~Gk~Ie~tGFVy~~~~~~~N~lflaRFg--i--icC~ADa~vygl~v~~~~~~~--y~ndtWltvkGtl~~e~~~~ 243 (271)
T COG3689 170 PDEFAGKKIEFTGFVYNDESFPKNYLFLARFG--I--ICCAADAGVYGLLVELDNQTD--YKNDTWLTVKGTLSSEYLSD 243 (271)
T ss_pred chhhcCceEEEEEEEECCCCCCcceeehhhhh--e--eeeeccceeEEEEEEcccccc--CCCCceEEEEeEEEeeecCc
Confidence 44788999999999988555544444445522 2 4455555421 1222335 8999999999999865221
Q ss_pred --CceEEEEEeEEEEEccCCC
Q 011364 99 --KQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 99 --~~~~el~~~~i~vls~~~~ 117 (487)
..-.-|+|++++++.+...
T Consensus 244 ~~~~ipvi~v~sv~~I~kP~n 264 (271)
T COG3689 244 FKKRIPVIEVDSVEVIPKPAN 264 (271)
T ss_pred hhhcCcEEEeeeeeecCCCCC
Confidence 2346688999998887653
No 208
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=60.72 E-value=1.3e+02 Score=27.34 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=51.6
Q ss_pred CCCCEEEEEEEEe--eeecC-C--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCce
Q 011364 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (487)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~-g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~ 101 (487)
..++.+++.|.|. |+... + .+.| .+.|+. ..+.|..+.-.++ +.+.|.-|-++|++. . +
T Consensus 49 ~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~--~~v~V~Y~GilPD-------lFrEGqgVVaeG~~~--~-g--- 112 (155)
T PRK13159 49 AGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKN--AATQVEYTGILPD-------LFRDNQSVIANGRMQ--G-G--- 112 (155)
T ss_pred ccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCC--cEEEEEEccCCCc-------cccCCCeEEEEEEEc--C-C---
Confidence 4568999999998 77664 3 4677 578986 3588777654332 267899999999986 1 2
Q ss_pred EEEEEeEEEEEccCCCCC
Q 011364 102 VELKVNKIVLVGKSDPSY 119 (487)
Q Consensus 102 ~el~~~~i~vls~~~~~~ 119 (487)
..++ =+||.||+..|
T Consensus 113 -~F~A--~~vLAKHde~Y 127 (155)
T PRK13159 113 -RFVA--NEVLAKHDETY 127 (155)
T ss_pred -EEEE--eEEEecCCCcC
Confidence 2333 36789997553
No 209
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=60.13 E-value=2.6 Score=45.91 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhh-cCCeEEEeCCeeeccC
Q 011364 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASD 179 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~~ 179 (487)
-.+++..|.+..|++|. +.+++||+||+|++..
T Consensus 36 G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~ 69 (551)
T TIGR00389 36 GAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEE 69 (551)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEeeccccCCHH
Confidence 35677889999999884 7789999999999853
No 210
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=59.72 E-value=78 Score=24.98 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=38.7
Q ss_pred EEEEEEeeeecCC-CeEEEEEEcCCCCe---ee-EEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 33 VVAGWVRTLRAQS-SVTFIEVNDGSCLS---NM-QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 33 ~v~GwV~~iR~~g-~i~Fi~lrD~~~~~---~l-Qvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
+|.|.|....... .-.|. |+|..+-. +- -+.+.... ... +.+||.|.|+|++..-.. ..+|...
T Consensus 1 ~v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~-----~~~--~~~Gd~V~vtG~v~ey~g---~tql~~~ 69 (78)
T cd04486 1 TVEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS-----GAD--VAVGDLVRVTGTVTEYYG---LTQLTAV 69 (78)
T ss_pred CeEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC-----CCC--CCCCCEEEEEEEEEeeCC---eEEEccC
Confidence 3678888887642 23455 66652100 00 12222110 124 999999999999987643 3455543
Q ss_pred E-EEEEc
Q 011364 108 K-IVLVG 113 (487)
Q Consensus 108 ~-i~vls 113 (487)
. +++++
T Consensus 70 ~~~~~~~ 76 (78)
T cd04486 70 SAIEVLG 76 (78)
T ss_pred CceEEec
Confidence 3 55444
No 211
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=55.71 E-value=81 Score=23.60 Aligned_cols=48 Identities=6% Similarity=0.239 Sum_probs=33.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc--h--HhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y--DQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~--~~~~~~~L~~gd~V~V~ 89 (487)
.+.|+|.++.+.| +|+.|.++ ++..++.+... + +.-.. ++.|+.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~V~l~~~-----~~gli~~s~l~~~~~~~~~~~--~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG--CIVSFYNN-----VKGFLPKSELSEAFIKDPEEH--FRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc--EEEEECCC-----CEEEEEHHHcChhhcCCHHHc--ccCCCEEEEE
Confidence 4789999999887 89999643 57777764321 1 11233 8899999887
No 212
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=54.63 E-value=79 Score=27.62 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=39.2
Q ss_pred CCEEEEEEEEeeeecC-CC-eEEEEE-----EcCC---CCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCC
Q 011364 29 GLMIVVAGWVRTLRAQ-SS-VTFIEV-----NDGS---CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~~-g~-i~Fi~l-----rD~~---~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~ 97 (487)
++.+++.|.|.+.... ++ ..|..- ..+. ...++++.++++.. .. +.+||.|.++|++...+.
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~--l~~Gd~i~~~g~l~~~~~ 146 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ-----PR--LQPGDRIRVRGKLKPPSG 146 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc-----cc--cCCCCEEEEEEEEecCCC
Confidence 7889999999888654 32 223321 1111 12356666665432 14 899999999999987543
No 213
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=53.67 E-value=69 Score=23.60 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=38.2
Q ss_pred EEEEEEeeeecCCCeEEEEEEcC-CCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDG-SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~-~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
.+.|.|..++..|....++|... ++ +.|.+-++.+. ..+ . +..||.|.+.
T Consensus 6 ~l~a~V~~v~~~G~~vRlEl~~~~~~-~~iEvel~~~~---~~l-~--l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVGPEVRLELKRLDDG-EPIEVELPRER---RQL-G--LQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecCCeEEEEEEECCCC-CEEEEEeCHhH---Hhc-C--CCCCCEEEEE
Confidence 57889999999999999999654 44 47888888653 112 3 7779999875
No 214
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=53.14 E-value=32 Score=26.74 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=32.2
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc------hHhH-hccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG------YDQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~------~~~~-~~~~L~~gd~V~V~ 89 (487)
.|.|.|.++.+.| +|++|..+ +...+...... ...+ +. ++.|+.|.+.
T Consensus 6 ~V~g~V~~i~~~G--~fV~l~~~-----v~G~v~~~~ls~~~~~~~~~~~~~--~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG--VFFRLSSS-----IVGRVLFQNVTKYFVSDPSLYNKY--LPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc--EEEEeCCC-----CEEEEEHHHccCccccChhhHhcc--cCCCCEEEEE
Confidence 6889999999888 99999643 45556533211 1112 34 8999998865
No 215
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=53.08 E-value=98 Score=38.06 Aligned_cols=82 Identities=13% Similarity=0.207 Sum_probs=52.6
Q ss_pred CCEEEEEEEEeeeec----CCC-eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEE
Q 011364 29 GLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~----~g~-i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~e 103 (487)
...|+|.|.|-.+-. .|+ +.=+.|.|.++.-.++..+... ..-+.... |+.|+.|.|+|.+...+-. +++.
T Consensus 236 ~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~-~~~~~~~~--~~~g~~v~~~g~~~~d~~~-~~~~ 311 (1437)
T PRK00448 236 ERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDK-EDLKKFDE--IKKGDWVKVRGSVQNDTFT-RDLV 311 (1437)
T ss_pred CCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCc-chhHHHhc--CCCCCEEEEEEEEeccCCC-CceE
Confidence 467999999988732 344 3336789998643344443222 22233456 9999999999999876432 3677
Q ss_pred EEEeEEEEEcc
Q 011364 104 LKVNKIVLVGK 114 (487)
Q Consensus 104 l~~~~i~vls~ 114 (487)
+.+..+..+.+
T Consensus 312 ~~~~~~~~~~~ 322 (1437)
T PRK00448 312 MNAQDINEIKH 322 (1437)
T ss_pred EEeeeeeecCC
Confidence 77777765433
No 216
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=52.64 E-value=55 Score=31.66 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=33.6
Q ss_pred CCceEEEecccccCC----CCCCcccccccceeeEEccCCH--HHHHHHHHHHHHH
Q 011364 243 LSNVYTFGPTFRAEN----SNTSRHLAEFWMIEPELAFADL--KDDMACATAYLQY 292 (487)
Q Consensus 243 ~~kvfeI~~~FR~E~----~~t~rHl~EFtmlE~e~~~~~~--~~lm~~~e~li~~ 292 (487)
..|+-...+|.|.-+ ..|.||+.=|.|| .-.+|.|| ++.+..+=++|..
T Consensus 55 ~~r~~~~QkCiR~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT~ 109 (232)
T cd00673 55 ANRLVNSQKCIRAGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLTE 109 (232)
T ss_pred CCceeeeeeceecCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHHh
Confidence 367888889999642 2378999999999 44556675 5666666665544
No 217
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=51.82 E-value=39 Score=28.56 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCCcEEEEEeeEeecCC----CC--ceEEEEEeEEEEEccC
Q 011364 80 ITTGASIWIQGNVVPSQG----SK--QKVELKVNKIVLVGKS 115 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~----~~--~~~el~~~~i~vls~~ 115 (487)
|..||-|.|+|.+..+.= +. ...||.++++.+|++.
T Consensus 65 l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 65 CTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 999999999999987631 11 2588999999998764
No 218
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=51.36 E-value=17 Score=27.56 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEe
Q 011364 149 RVRNALAYATHKFFQENGFIWIS 171 (487)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~ 171 (487)
+.|.+|++.||+||...|=++|-
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEE
Confidence 46899999999999999987764
No 219
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=51.12 E-value=38 Score=30.90 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=35.9
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
+.|++....... ..+. |+.|+.|.|+|.+..+. .+ ....||.|++|++|...
T Consensus 49 i~vv~wgk~Ae~-~~~~--l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 49 INCVIWRQQAEN-LANW--AKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EEEEEEcHHHHH-HHHH--cCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 667776543221 1245 99999999999998652 12 13588999999988754
No 220
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=50.44 E-value=39 Score=27.19 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=34.0
Q ss_pred eeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCC----C--CceEEEEEeEEEEE
Q 011364 59 SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLV 112 (487)
Q Consensus 59 ~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~----~--~~~~el~~~~i~vl 112 (487)
..++|.+..+... ..++. ++.||.|.|+|.+....- + ...+++.+++|.++
T Consensus 44 ~~~~v~~~g~~a~-~~~~~--~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 44 DWIRVVAFGKLAE-NAAKY--LKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred EEEEEEEEhHHHH-HHHHH--hCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 3477877764321 12455 999999999999977531 1 23578888887653
No 221
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=50.00 E-value=1.8e+02 Score=32.66 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=51.1
Q ss_pred CCCCEEEEEEEEeeeecC---C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 27 RVGLMIVVAGWVRTLRAQ---S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~---g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
..|+.|++.|.|.+.-.. + ++.=+.+.|+++ .+-+++-.... | ..+. ++.|.-|.|+|++...+. ..
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~--~l~l~fFn~~~-~-l~~~--~~~G~~v~v~Gk~~~~~~---~~ 128 (677)
T COG1200 58 RPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTG--VLTLVFFNFPA-Y-LKKK--LKVGERVIVYGKVKRFKG---GL 128 (677)
T ss_pred CCCceEEEEEEEEeeeccCCCCCceEEEEEecCcE--EEEEEEECccH-H-HHhh--CCCCCEEEEEEEEeeccC---ce
Confidence 567899999999766432 2 344456788775 47776654322 1 1234 999999999999998543 35
Q ss_pred EEEEeEEEEEc
Q 011364 103 ELKVNKIVLVG 113 (487)
Q Consensus 103 el~~~~i~vls 113 (487)
++.--++.+.+
T Consensus 129 ~~~hpe~~~~~ 139 (677)
T COG1200 129 QITHPEYIVND 139 (677)
T ss_pred EEEcceEEecC
Confidence 55555555543
No 222
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=49.96 E-value=1.1e+02 Score=25.52 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=41.1
Q ss_pred EEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEc
Q 011364 48 TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (487)
Q Consensus 48 ~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls 113 (487)
-=+.|+||.. .+|.++...... .+..|.|+.|++|.+.=....+-.. +.--|.+.+++|+.
T Consensus 40 yR~~lSDG~~--~~~amLatqln~--lv~~g~l~~~siirl~~y~~n~v~~-~k~iiiil~leVv~ 100 (101)
T PF04057_consen 40 YRLVLSDGVH--SIQAMLATQLNH--LVESGELQKGSIIRLKQYTCNTVKN-GKKIIIILDLEVVQ 100 (101)
T ss_dssp EEEEEESSSE--EEEEEESGGGHH--HHHTTSSSTT-EEEEEEEEEEESTT-SSEEEEEEEEEEEE
T ss_pred EEEEEEChHH--HHHHHhHHHhHH--HHhcCCcccCCEEEEeEEEEeeccC-CCEEEEEEeeEEEe
Confidence 3367899984 599999876432 2344569999999999877655331 13447778888764
No 223
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=49.66 E-value=12 Score=36.66 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=38.6
Q ss_pred CceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011364 396 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 396 ~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Ird 474 (487)
.....+|+.++|| ||.-= . -|.. .|++- -|.++=+.-|+|||.|.+-|.+||-|
T Consensus 120 AwGlGWEVWldGM-EITQf-----T------YFQQvGGi~~-------------~pv~~EITYGLERiamylQ~vdnv~d 174 (284)
T PF02091_consen 120 AWGLGWEVWLDGM-EITQF-----T------YFQQVGGIDC-------------KPVSVEITYGLERIAMYLQGVDNVYD 174 (284)
T ss_dssp EEEEEEEEEETTC-EEEEE-----E------EEEEETTEE--------------SS--EEEEEEHHHHHHHHCT-SSGGG
T ss_pred ccccccEEEECCE-EEEEe-----e------eeeeeCCccc-------------cccceehhhhHHHHHHHHhCCCeeEe
Confidence 3457899999998 98621 0 1111 23332 35667799999999999999999999
Q ss_pred ccc
Q 011364 475 AIP 477 (487)
Q Consensus 475 v~~ 477 (487)
++.
T Consensus 175 l~w 177 (284)
T PF02091_consen 175 LIW 177 (284)
T ss_dssp SEE
T ss_pred eee
Confidence 865
No 224
>PRK04036 DNA polymerase II small subunit; Validated
Probab=49.38 E-value=61 Score=35.18 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=44.6
Q ss_pred CCCEEEEEEEEeeeecCCC-eEEEEEEcCCCCeeeEEEEeCCccch-HhHhccCCCCCcEEEEEeeEee
Q 011364 28 VGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVP 94 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~-i~Fi~lrD~~~~~~lQvv~~~~~~~~-~~~~~~~L~~gd~V~V~G~~~~ 94 (487)
.++.+.|-|-|..+|..++ -..+.|-|.+| ++++++.++...+ +.... |-.|.+|.|.|+...
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~~~~~LED~sg--rv~l~~~~~~~~~~~~~~~--lvtg~vv~v~G~~~~ 216 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGHKIVELEDTTG--TFPVLIMKDREDLAELADE--LLLDEVIGVEGTLSG 216 (504)
T ss_pred CCceEEEEEEEEEeecccCCceEEEEECCCC--eEEEEeecchhhhhhhhhc--ccCceEEEEEEEEcC
Confidence 4578999999999985321 22467999996 5999886543122 21234 889999999998753
No 225
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=48.28 E-value=9.6 Score=39.16 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=39.4
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~ 293 (487)
|.|+|.+|||.|.-.+..||--+.+--+-.... +.++--..+|.|+++.
T Consensus 209 klFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qf 259 (536)
T COG2024 209 KLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259 (536)
T ss_pred eeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHh
Confidence 789999999999877888987777766655543 4677888999999876
No 226
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=46.94 E-value=1.8e+02 Score=35.24 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCEEEEEEEEeeeec----CCC-eEEEEEEcCCCCeeeEEEEeC-CccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 29 GLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~----~g~-i~Fi~lrD~~~~~~lQvv~~~-~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
...|+|.|.|-.+-. .|+ +.-+.|.|.+.. |.|..-. .....+.+.. |+.|+.|.|+|.+....-. +++
T Consensus 7 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s--~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~~ 81 (1213)
T TIGR01405 7 ENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDS--LILKKFLKSEEDPEKFDG--IKIGKWVRARGKIELDNFS-RDL 81 (1213)
T ss_pred CCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCC--EEEEEecccccchHHHhh--cCCCcEEEEEEEEeccCCC-Cce
Confidence 467999999987633 345 444788999854 5554333 2222234556 9999999999999766432 367
Q ss_pred EEEEeEEEEEc
Q 011364 103 ELKVNKIVLVG 113 (487)
Q Consensus 103 el~~~~i~vls 113 (487)
.+.+..|..+.
T Consensus 82 ~~~~~~~~~~~ 92 (1213)
T TIGR01405 82 QMIIKDIEEIP 92 (1213)
T ss_pred EEEeeeeeecC
Confidence 77777776543
No 227
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=46.74 E-value=60 Score=29.96 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=35.1
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCC----C--CceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~----~--~~~~el~~~~i~vls~~ 115 (487)
+-|++-...... ..+. |+.||.|.|+|.+..+.= + ...+||.|+.|++|...
T Consensus 49 i~~v~wgk~Ae~-~~~~--l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 49 INCVIWRKQAEN-VANY--LKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEeCcHHHH-HHHH--cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 566666543211 1344 999999999999987631 1 12588899999888754
No 228
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=46.60 E-value=72 Score=36.74 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeecc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITAS 178 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~ 178 (487)
..+.+.+|++|...||.||-|-.+++.
T Consensus 490 ~~~~~~ir~~L~~~Gf~Ev~tysf~~~ 516 (791)
T PRK00629 490 QRLLRRLRRALAALGYQEVITYSFVSP 516 (791)
T ss_pred HHHHHHHHHHHHHCCCcEEeccccCCH
Confidence 445677899999999999999999875
No 229
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=46.17 E-value=14 Score=35.91 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=41.2
Q ss_pred CceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011364 396 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 396 ~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Ird 474 (487)
.....+|+.++|| ||.-= .-|.. .|++- -|..+=+--|+|||.|.+-|.+||-|
T Consensus 121 AwGLGWEVWldGM-EITQF-----------TYFQQvGGi~~-------------~pv~~EiTYGLERiamylQ~vd~v~d 175 (279)
T cd00733 121 AWGLGWEVWLDGM-EVTQF-----------TYFQQVGGIPC-------------KPISVEITYGLERIAMYLQGVDNVYD 175 (279)
T ss_pred ccccccEEEECCe-eeeee-----------eeeeeeCCeec-------------cccceeeehhHHHHHHHHhCCCceec
Confidence 3456799999998 98621 11212 24432 35677789999999999999999998
Q ss_pred ccc
Q 011364 475 AIP 477 (487)
Q Consensus 475 v~~ 477 (487)
+..
T Consensus 176 l~w 178 (279)
T cd00733 176 IEW 178 (279)
T ss_pred ccc
Confidence 764
No 230
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=45.74 E-value=65 Score=24.51 Aligned_cols=50 Identities=8% Similarity=0.172 Sum_probs=34.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc---hHhH-hccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~---~~~~-~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++...| +|++|.+..+ +...+..+... +... .. ++.||.|.|.
T Consensus 6 ~~~g~V~~v~~~g--~~v~l~~~~~---~~gll~~s~l~~~~~~~~~~~--~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG--AYVSLLEYGN---IEGMILLSELSRRRIRSIRKL--VKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE--EEEEEcCCCC---eEEEEEhHHcCCcccCCHHHe--eCCCCEEEEE
Confidence 5789999999887 8999987532 45666654321 1112 23 7999998886
No 231
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=45.71 E-value=39 Score=27.55 Aligned_cols=49 Identities=12% Similarity=0.317 Sum_probs=28.5
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEE
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLV 112 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vl 112 (487)
++|++..+.... ..+. |+.||.|.|+|.+.... .+ ...++|.|++|++|
T Consensus 50 ~~v~~~g~~A~~-~~~~--l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 50 INVVAWGKLAEN-VAEY--LKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEHHHHHH-HHHH----TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEeeeecccc-cceE--EcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 555555432111 1345 99999999999987642 12 23588999998875
No 232
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=45.24 E-value=15 Score=35.85 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=41.8
Q ss_pred CceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011364 396 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 396 ~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Ird 474 (487)
.....+|+.++|| ||.-= . -|.. .|++- -|..+=+--|+|||.|.+-|.+||-|
T Consensus 125 AwGlGWEVWldGM-EITQF-----T------YFQQvGGi~~-------------~pv~~EITYGLERiamylQ~vd~v~d 179 (283)
T PRK09348 125 AWGLGWEVWLDGM-EVTQF-----T------YFQQVGGIEC-------------KPVTGEITYGLERLAMYLQGVDNVYD 179 (283)
T ss_pred ccccceEEEECCe-eeeee-----e------eeeeeCCeec-------------cccceeeehhHHHHHHHHhCCCceee
Confidence 3456799999998 98621 1 1111 24442 35677789999999999999999999
Q ss_pred cccc
Q 011364 475 AIPF 478 (487)
Q Consensus 475 v~~F 478 (487)
+..=
T Consensus 180 l~w~ 183 (283)
T PRK09348 180 LVWN 183 (283)
T ss_pred eecC
Confidence 8653
No 233
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=45.24 E-value=37 Score=31.65 Aligned_cols=37 Identities=11% Similarity=0.369 Sum_probs=29.4
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccCC
Q 011364 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~~ 116 (487)
|+.||-|.|+|.+..+. .+ ...+||.|++|++|+...
T Consensus 67 l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~~ 109 (182)
T PRK08486 67 LSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSKS 109 (182)
T ss_pred cCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCCC
Confidence 99999999999998652 12 235899999999998653
No 234
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=45.15 E-value=42 Score=30.81 Aligned_cols=52 Identities=10% Similarity=0.287 Sum_probs=35.5
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
+.|++-.....+ ..+. |+.||.|.|+|.+..+. .+ ...+||.+++|++|+..
T Consensus 54 ~~Vv~fgk~AE~-v~~~--LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 54 HRIVFYRRQAEV-AGEY--LRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEhHHHHH-HHHH--CCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 566665432211 1345 99999999999998763 12 13589999999998754
No 235
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=44.85 E-value=62 Score=24.23 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=33.2
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc--c-hHh-HhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G-YDQ-VKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~--~-~~~-~~~~~L~~gd~V~V~ 89 (487)
.+.|+|.++...| +|+.|.++ +...+..+.. . .+. ... ++.||.|.|.
T Consensus 3 ~v~g~V~~v~~~G--v~V~l~~~-----~~G~v~~s~l~~~~~~~~~~~--~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG--VFVTLGRG-----VDARVRVSELSDSYLKDWKKR--FKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc--EEEEeCCC-----CEEEEEHHHCCchhhcCHhhc--cCCCCEEEEE
Confidence 4799999999888 89999754 4566664431 1 122 233 8999999886
No 236
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=44.68 E-value=40 Score=31.37 Aligned_cols=52 Identities=12% Similarity=0.288 Sum_probs=35.3
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
+.|++...... ...+. |+.||.|.|+|.+..+. .+ ...+||.|++|++|+..
T Consensus 54 ~~V~~fGk~AE-~v~~~--LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 54 HRVAFFGRLAE-IVGEY--LKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEehHHHH-HHHHH--hCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 55555543211 11345 99999999999998752 11 23689999999999864
No 237
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=43.53 E-value=1.4e+02 Score=22.50 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=31.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc--h--HhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y--DQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~--~~~~~~~L~~gd~V~V~ 89 (487)
.+.|+|.++...| +|++|.+.. +..++..+... + +.-.. +++||.|.|.
T Consensus 5 ~v~g~V~~i~~~g--~~v~l~~~~----~~g~i~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 57 (77)
T cd05708 5 KIDGTVRRVEDYG--VFIDIDGTN----VSGLCHKSEISDNRVADASKL--FRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEEcce--EEEEECCCC----eEEEEEHHHCCCCccCCHhHe--ecCCCEEEEE
Confidence 4799999999877 899987521 45555533211 1 11133 7999999886
No 238
>PLN02972 Histidyl-tRNA synthetase
Probab=40.27 E-value=19 Score=40.81 Aligned_cols=49 Identities=24% Similarity=0.494 Sum_probs=33.1
Q ss_pred EEEEEEecC--eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011364 399 AAMDMLVPR--IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 468 (487)
Q Consensus 399 ~~fdl~~~G--~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g 468 (487)
--||.|.+| ++-|++|+ ||+.|...+. | --.|.-||+||+|||+.++..
T Consensus 605 iVFE~~~~g~~~gsIagGG----RYD~Lv~~Fg--G---------------~~vPAVGFSiGIERL~~~L~~ 655 (763)
T PLN02972 605 VIYEAVFKGAQVGSIAAGG----RYDNLVGMFS--G---------------KQVPAVGVSLGIERVFAIMEQ 655 (763)
T ss_pred eEEEEEEcCCccceeeecC----CchhHHHhcC--C---------------CCCCEEEEEecHHHHHHHHHH
Confidence 348888875 34677887 4455544331 1 134899999999999988753
No 239
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.53 E-value=6.8 Score=41.39 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=0.0
Q ss_pred EEecccccC--CCCCCcccccccceeeE
Q 011364 248 TFGPTFRAE--NSNTSRHLAEFWMIEPE 273 (487)
Q Consensus 248 eI~~~FR~E--~~~t~rHl~EFtmlE~e 273 (487)
|||++|||| +-.+--+.-||||-|+|
T Consensus 214 qiG~~fRNEISpRsGLlRvrEF~maEIE 241 (599)
T KOG2298|consen 214 QIGKSFRNEISPRSGLLRVREFTMAEIE 241 (599)
T ss_pred HhchHhhhccCcccCceeEEEeehHHhh
No 240
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.43 E-value=75 Score=28.92 Aligned_cols=36 Identities=14% Similarity=0.430 Sum_probs=28.1
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
|..|+.|.|+|.+..+. .+ ...+||.|++|..|...
T Consensus 69 l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 69 LKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred CCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 99999999999998652 22 23588999999887654
No 241
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=39.11 E-value=1.2e+02 Score=34.52 Aligned_cols=28 Identities=4% Similarity=0.023 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeecc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITAS 178 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~ 178 (487)
...+.+.+|+.|...||.|+-|-.+++.
T Consensus 400 ~~~~~~~ir~~L~~~Gf~Evitysf~s~ 427 (704)
T CHL00192 400 DYNTRDKIRSYLRNLGLTELIHYSLVKQ 427 (704)
T ss_pred HHHHHHHHHHHHHhCCCceEecccccCh
Confidence 3456777899999999999999999876
No 242
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=38.97 E-value=1.4e+02 Score=21.87 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=36.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
.+.|.|..+...|...++.+.-+.+ ..|-+.++... +..+ . |.+||-|.+.
T Consensus 6 ~l~g~V~~ie~~g~~~~v~~~~~~~-~~l~a~it~~~--~~~L-~--L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLGSEVEVTLDLGGG-ETLTARITPES--AEEL-G--LKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESSSEEEEEEEETTS-EEEEEEEEHHH--HHHC-T---STT-EEEEE
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEEcHHH--HHHc-C--CCCCCEEEEE
Confidence 6899999999999999999986654 23777776532 1222 3 8899998876
No 243
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=38.04 E-value=21 Score=35.01 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=42.0
Q ss_pred CceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011364 396 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 396 ~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Ird 474 (487)
.....+|+.++|| ||.-= .-|.. .|++- -|..+=+--|+|||+|.+-|.+||-|
T Consensus 122 AwGlGWEVWldGM-EITQF-----------TYFQQvGGi~~-------------~pv~~EITYGLERiaMylQ~vd~v~d 176 (293)
T TIGR00388 122 AWGLGWEVWLDGM-EVTQF-----------TYFQQVGGLEC-------------KPVSVEITYGLERLAMYIQGVENVYD 176 (293)
T ss_pred ccccccEEEECCe-eeeee-----------eeeeeeCCeec-------------cccceeeehhHHHHHHHHhCCCeeee
Confidence 3456799999998 98621 11111 24432 35556788999999999999999999
Q ss_pred ccccC
Q 011364 475 AIPFP 479 (487)
Q Consensus 475 v~~FP 479 (487)
+..=.
T Consensus 177 l~w~~ 181 (293)
T TIGR00388 177 LEWSD 181 (293)
T ss_pred eeecC
Confidence 87654
No 244
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=37.97 E-value=57 Score=29.82 Aligned_cols=36 Identities=14% Similarity=0.424 Sum_probs=29.0
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
|+.||.|.|+|.+.... .+ ...+||.+++|++|...
T Consensus 70 L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 70 LRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred cCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 99999999999998752 12 13689999999998865
No 245
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.57 E-value=60 Score=38.52 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=28.8
Q ss_pred CCCEEEEEEEEeeeecC---C---CeEEEEEEcCCCCeeeEEEE
Q 011364 28 VGLMIVVAGWVRTLRAQ---S---SVTFIEVNDGSCLSNMQCVM 65 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~---g---~i~Fi~lrD~~~~~~lQvv~ 65 (487)
.+..|++.|.|.++|.. + .++|+.|.|.+|. +.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~--ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGS--IEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCc--EEEEe
Confidence 45679999999877652 2 4999999999975 88876
No 246
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=36.33 E-value=46 Score=23.91 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=18.9
Q ss_pred HHHcCCCcccH-HHHHHHHhcCCCCc
Q 011364 428 LDELKLNRDSY-WWYLDLRHYGSVPH 452 (487)
Q Consensus 428 ~~~~g~~~~~~-~~yl~~~~~G~pP~ 452 (487)
++.+|+.+.+. -|+..+.++|.||.
T Consensus 10 R~ALg~~~~~~PPwl~~M~~~G~PP~ 35 (48)
T PF04046_consen 10 REALGMQENDPPPWLYRMRRLGYPPG 35 (48)
T ss_pred HHHcCCCCCCCChHHHHHHhcCCCCC
Confidence 34567765543 79999999999985
No 247
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=35.56 E-value=69 Score=29.20 Aligned_cols=52 Identities=12% Similarity=0.287 Sum_probs=34.4
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
+.|++....... ..+. |+.||-|.|+|.+.... .+ ...+||.+++|.+|+-.
T Consensus 45 i~v~awg~~Ae~-v~~y--L~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 45 CRCNIWGNRYDK-MLPY--LKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEhHHHHH-HHHh--CCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 556655432111 1244 99999999999998652 12 13588999999988554
No 248
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=35.54 E-value=1.9e+02 Score=21.72 Aligned_cols=49 Identities=6% Similarity=0.139 Sum_probs=32.4
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc--chHh-HhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GYDQ-VKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~--~~~~-~~~~~L~~gd~V~V~ 89 (487)
.+.|.|..+...| +|+.|.++ ++.++..+.. ++.. .. ..++.||.|.+.
T Consensus 6 iv~g~V~~v~~~g--i~v~l~~~-----~~g~v~~s~l~~~~~~~~~-~~~~~Gd~v~~~ 57 (73)
T cd05706 6 ILPGRVTKVNDRY--VLVQLGNK-----VTGPSFITDALDDYSEALP-YKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEEeCCe--EEEEeCCC-----cEEEEEhhhccCccccccc-cccCCCCEEEEE
Confidence 5789999998776 88988654 5677765432 2211 11 137889998875
No 249
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=34.83 E-value=1.1e+02 Score=29.45 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=52.9
Q ss_pred CCEEEEEEEEeee---ec--CC-CeEEEEEE-cCC--CCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC---
Q 011364 29 GLMIVVAGWVRTL---RA--QS-SVTFIEVN-DGS--CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ--- 96 (487)
Q Consensus 29 ~~~V~v~GwV~~i---R~--~g-~i~Fi~lr-D~~--~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~--- 96 (487)
-..|.+.|++.+- |. .| .++-+.|- +.. ...-+.|++......+ +.. |+.||-|.|.|.+....
T Consensus 109 ~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~Ae~--~~~--l~KG~~V~V~GrL~sr~y~~ 184 (219)
T PRK05813 109 PNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRNARF--CKT--LEVGDNIRVWGRVQSREYQK 184 (219)
T ss_pred ccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHHhHH--Hhh--CCCCCEEEEEEEEEecceEc
Confidence 3568899998764 43 23 34444442 211 1123677777553322 445 99999999999998652
Q ss_pred -CC------CceEEEEEeEEEEEccCC
Q 011364 97 -GS------KQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 97 -~~------~~~~el~~~~i~vls~~~ 116 (487)
.+ ...+||.+.+++.|++..
T Consensus 185 k~g~~~g~kr~~~eV~v~~i~~l~~~~ 211 (219)
T PRK05813 185 KLSEGEVVTKVAYEVSISKMEKVEKEE 211 (219)
T ss_pred CCCCccceEEEEEEEEEEEEEEcCChh
Confidence 11 125899999999988754
No 250
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=34.68 E-value=1.2e+02 Score=34.96 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=20.9
Q ss_pred HHHHHhhhcCCeEEEeCCeeecc
Q 011364 156 YATHKFFQENGFIWISSPIITAS 178 (487)
Q Consensus 156 ~~iR~ff~~~gF~EV~TP~L~~~ 178 (487)
+.+|++|...||.|+-|-.+++.
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~ 520 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSS 520 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCH
Confidence 57899999999999999999875
No 251
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=34.21 E-value=89 Score=29.41 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=38.3
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
.-++.|||-.+-. +.++|.-.... +++|++++.. .. ++.||.|.|+|.+....
T Consensus 39 ~~tiEGrVvEV~~--~~i~iesk~yn--~~v~i~~d~~-------~n--vKVGD~VKaTG~m~rnf 91 (213)
T PRK06763 39 FSTIEGRVVEVDN--GVIVIKSKQYE--EPVSVYIDSL-------SN--VKVGDEVKATGSMMRNF 91 (213)
T ss_pred cceeeeEEEEEeC--CEEEEEeccCC--CceEEEecCC-------CC--cccCcEEEEchHHHHhh
Confidence 3589999988874 33455555444 5799988754 24 89999999999976543
No 252
>PRK08059 general stress protein 13; Validated
Probab=34.02 E-value=1.7e+02 Score=25.07 Aligned_cols=64 Identities=17% Similarity=0.360 Sum_probs=38.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc--h-Hh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~-~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
.+.|.|.++...| +|+.|.++ ++.++..+... + .. -.. ++.||.|.|. +.......+.+.+.+.
T Consensus 10 iv~G~V~~i~~~G--~fV~i~~~-----~~Gli~~sel~~~~~~~~~~~--~~vGD~I~vk--I~~id~~~~~i~lslk 77 (123)
T PRK08059 10 VVTGKVTGIQPYG--AFVALDEE-----TQGLVHISEITHGFVKDIHDF--LSVGDEVKVK--VLSVDEEKGKISLSIR 77 (123)
T ss_pred EEEEEEEEEecce--EEEEECCC-----CEEEEEHHHCCcccccCHHHc--CCCCCEEEEE--EEEEECCCCeEEEEEE
Confidence 6799999999887 89999654 35555543211 1 11 123 7999999987 3333222234555443
No 253
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=33.88 E-value=2.1e+02 Score=27.47 Aligned_cols=81 Identities=9% Similarity=0.104 Sum_probs=51.7
Q ss_pred CCCEEEEEEEEeee---ec-CCCeEEEEE-------EcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeec-
Q 011364 28 VGLMIVVAGWVRTL---RA-QSSVTFIEV-------NDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS- 95 (487)
Q Consensus 28 ~~~~V~v~GwV~~i---R~-~g~i~Fi~l-------rD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~- 95 (487)
.+..|.+.|++.+= |. ..+-.|... ++.+ .-|.|++...... ... +..|+.|.|+|.+..=
T Consensus 7 ~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~--D~i~v~v~~rlae---~~~--l~kG~~v~VeGqlrsy~ 79 (219)
T PRK05813 7 ENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSK--DILPVTVSERLLA---GMD--LKVGTLVIVEGQLRSYN 79 (219)
T ss_pred hcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCc--cEEEEEEEhhhhh---hhc--ccCCCEEEEEEEEEEec
Confidence 45779999999764 22 122233322 2444 3488888865422 234 8999999999999821
Q ss_pred -C-CC--CceEEEEEeEEEEEccC
Q 011364 96 -Q-GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 96 -~-~~--~~~~el~~~~i~vls~~ 115 (487)
. .+ .--+||.+.+++.|.+.
T Consensus 80 ~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 80 KFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred cCCCCcEEEEEEEEEEEEEEccCC
Confidence 1 12 12488899999988875
No 254
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=33.44 E-value=86 Score=27.37 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.9
Q ss_pred CCCCcEEEEEeeEeecCC---C--CceEEEEEeEEEEEcc
Q 011364 80 ITTGASIWIQGNVVPSQG---S--KQKVELKVNKIVLVGK 114 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~---~--~~~~el~~~~i~vls~ 114 (487)
|+.||.|.|+|.+....= + ....||.++++++|..
T Consensus 65 l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 65 ASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred cCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 999999999999987632 2 1258999999998864
No 255
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=33.44 E-value=85 Score=35.29 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeecc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITAS 178 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~ 178 (487)
.-..+...+.+|++|...||.||-|-.|++.
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~ 380 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSP 380 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCH
Confidence 3355667888999999999999999999984
No 256
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=32.97 E-value=39 Score=35.40 Aligned_cols=60 Identities=23% Similarity=0.482 Sum_probs=36.9
Q ss_pred EEEEEEecCe---eeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCC-Cccc
Q 011364 399 AAMDMLVPRI---GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE-NIRD 474 (487)
Q Consensus 399 ~~fdl~~~G~---~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~-~Ird 474 (487)
--||++.++. +-|++|+ ||+.+.+++. +. ..|..||++|+|||+.++.... +=.+
T Consensus 262 ~vFe~~~~~~g~~~~i~~GG----RYD~L~~~f~--~~---------------~~pavGfs~~le~l~~~l~~~~~~~~~ 320 (412)
T PRK00037 262 TVFEFVTDDLGAQGTVCGGG----RYDGLVEQFG--GP---------------PTPAVGFAIGVERLLLLLEELGEEPVD 320 (412)
T ss_pred eEEEEEECCCCccceeeecc----chhHHHHHhC--CC---------------CCceEEEEEcHHHHHHHHHhcCCCCCC
Confidence 3489998754 3677777 3444444431 11 3477799999999998886443 1124
Q ss_pred ccccC
Q 011364 475 AIPFP 479 (487)
Q Consensus 475 v~~FP 479 (487)
|..+|
T Consensus 321 vlI~~ 325 (412)
T PRK00037 321 VYVVP 325 (412)
T ss_pred EEEEE
Confidence 44444
No 257
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=32.56 E-value=1.2e+02 Score=22.27 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=31.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc---hHhH-hccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~---~~~~-~~~~L~~gd~V~V~ 89 (487)
.+.|.|..+...| +|++|.++ +...+..+... +... .. ++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~v~l~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG--AFVEILPG-----KDGLVHISELSDERVEKVEDV--LKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE--EEEEeCCC-----CEEEEEhHHcCCccccCHHHc--cCCCCEEEEE
Confidence 4689999999877 88998754 34555543211 1111 23 7899999887
No 258
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=32.41 E-value=2e+02 Score=22.35 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=33.2
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc---hHh-HhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ-VKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~---~~~-~~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++...| +|++|-++ ++..+..+... +.. -.. ++.||.|.|.
T Consensus 17 i~~g~V~~v~~~G--~fv~l~~~-----~~g~v~~~el~~~~~~~~~~~--~~~Gd~v~vk 68 (83)
T cd04461 17 VVHGYVRNITPYG--VFVEFLGG-----LTGLAPKSYISDEFVTDPSFG--FKKGQSVTAK 68 (83)
T ss_pred EEEEEEEEEeece--EEEEcCCC-----CEEEEEHHHCCcccccCHHHh--cCCCCEEEEE
Confidence 5679999999988 89999643 46777654321 111 233 8899999887
No 259
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=32.35 E-value=1.4e+02 Score=27.04 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=46.9
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEE----cCCCC--------eeeEEEEeCCccchHhHhccC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVN----DGSCL--------SNMQCVMTSDAEGYDQVKSGL 79 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lr----D~~~~--------~~lQvv~~~~~~~~~~~~~~~ 79 (487)
.+.+++.+. .....|+.|+.-|.|.++++..+-+.|.|. |.++. ++.=+.++ .|-.-..
T Consensus 20 ~~~~~v~~~---p~~~~G~~VrwGG~I~~v~n~~~~T~leV~~~PLd~~grP~~~~~s~GRFla~~~----gFLDP~~-- 90 (160)
T PF03843_consen 20 PSFSQVRAN---PDAYQGQQVRWGGVIVNVRNLPDQTELEVVQYPLDSSGRPQTDDPSQGRFLARVP----GFLDPAI-- 90 (160)
T ss_pred CCHHHHHhC---hhhcCCCEEEECCEEEEEEECCCceEEEEEEccCCCCCCcCCCCCCCCEEEEEeC----CCcCHHH--
Confidence 344444443 346789999999999999998777777764 22221 01111111 1111123
Q ss_pred CCCCcEEEEEeeEeecCC
Q 011364 80 ITTGASIWIQGNVVPSQG 97 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~ 97 (487)
...|-.|.|.|++.....
T Consensus 91 y~~Gr~vTV~G~v~g~~~ 108 (160)
T PF03843_consen 91 YAPGRLVTVVGTVTGMET 108 (160)
T ss_pred cCCCCEEEEEEEecceEE
Confidence 678999999999987654
No 260
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=32.00 E-value=1.2e+02 Score=22.08 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=31.4
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc--h--HhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y--DQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~--~~~~~~~L~~gd~V~V~ 89 (487)
.+.|.|..+...| +|+.+.++ .+..+..+... + ..-.. ++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~g--~~v~i~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (69)
T cd05692 3 VVEGTVTRLKPFG--AFVELGGG-----ISGLVHISQIAHKRVKDVKDV--LKEGDKVKVK 54 (69)
T ss_pred EEEEEEEEEEeee--EEEEECCC-----CEEEEEhHHcCCcccCCHHHc--cCCCCEEEEE
Confidence 4689999998877 88888644 35666543211 1 11133 8999999876
No 261
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=30.85 E-value=1.5e+02 Score=25.85 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=40.4
Q ss_pred eeeccccCCCCCCCCCCCCE--EEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 12 LKIVDVKGGPNEGLDRVGLM--IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~--V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
..|+||.+.. +...-+ |--.|++.+..+..++.=.-+-|.++.-++||.-+.. ..+.+||||..+
T Consensus 5 i~ikdi~P~~----kN~~v~fIvl~~g~~tkTkdg~~v~~~kVaD~TgsI~isvW~e~~---------~~~~PGDIirLt 71 (134)
T KOG3416|consen 5 IFIKDIKPGL----KNINVTFIVLEYGRATKTKDGHEVRSCKVADETGSINISVWDEEG---------CLIQPGDIIRLT 71 (134)
T ss_pred hhHhhcChhh----hcceEEEEEEeeceeeeccCCCEEEEEEEecccceEEEEEecCcC---------cccCCccEEEec
Confidence 3566776642 122221 3345666666665566666678988764555544322 139999999998
Q ss_pred ee
Q 011364 90 GN 91 (487)
Q Consensus 90 G~ 91 (487)
|=
T Consensus 72 ~G 73 (134)
T KOG3416|consen 72 GG 73 (134)
T ss_pred cc
Confidence 73
No 262
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=30.82 E-value=3.5e+02 Score=23.63 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=56.4
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeeec----CCC--eEEEEEEcCCCC--eeeEEEEeCCccchHhHhccCCCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA----QSS--VTFIEVNDGSCL--SNMQCVMTSDAEGYDQVKSGLITTG 83 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~----~g~--i~Fi~lrD~~~~--~~lQvv~~~~~~~~~~~~~~~L~~g 83 (487)
+.|+++.. ..++.|.|.|=|..... .|+ .+-+.|.|.++. ..|.|.+-.... +.+.. +..|
T Consensus 4 ~~i~~~~~-------~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~--~~LP~--v~~G 72 (138)
T cd04497 4 TPLSSALK-------ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE--ESLPI--VKVG 72 (138)
T ss_pred EeHHHHHh-------ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCCh--hhCCC--CCCC
Confidence 35556653 35688889999888754 232 455678898762 467776665431 22445 7899
Q ss_pred cEEEEEeeEeecCCCC-ceEEEE-EeEEEEEccCC
Q 011364 84 ASIWIQGNVVPSQGSK-QKVELK-VNKIVLVGKSD 116 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~-~~~el~-~~~i~vls~~~ 116 (487)
|+|.+.+.-...-.+. ..+.-. ...+-|.....
T Consensus 73 DVIll~~~kv~~~~g~~~~~~~~~~ss~avf~~~~ 107 (138)
T cd04497 73 DIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDD 107 (138)
T ss_pred CEEEEEEEEEEEECCceEEEECCCceeEEEEcCCC
Confidence 9999999666554332 111111 23456666554
No 263
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=30.72 E-value=1.2e+02 Score=22.86 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=33.4
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchH----hHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----QVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~----~~~~~~L~~gd~V~V~ 89 (487)
.+.|+|.++...| +|++|.++ +...++.+..... .... +..|+.|.|.
T Consensus 7 iv~g~V~~v~~~g--~~V~l~~~-----~~g~ip~~~l~~~~~~~~~~~--~~~G~~v~v~ 58 (74)
T PF00575_consen 7 IVEGKVTSVEDFG--VFVDLGNG-----IEGFIPISELSDDRIDDPSEV--YKIGQTVRVK 58 (74)
T ss_dssp EEEEEEEEEETTE--EEEEESTS-----SEEEEEGGGSSSSEESSSHGT--CETTCEEEEE
T ss_pred EEEEEEEEEECCE--EEEEECCc-----EEEEEEeehhcCccccccccc--cCCCCEEEEE
Confidence 5799999999866 89999833 4677876543211 1234 8889988776
No 264
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=30.46 E-value=1.1e+02 Score=23.00 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=30.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch-----HhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-----DQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~-----~~~~~~~L~~gd~V~V~ 89 (487)
.+.|+|.++...| +|+.|.++ +...+......+ +.-+. ++.||.|.|.
T Consensus 6 ~~~g~V~~i~~~G--~fv~l~~~-----~~Gl~~~~~l~~~~~~~~~~~~--~~~Gd~v~v~ 58 (72)
T cd05689 6 RLFGKVTNLTDYG--CFVELEEG-----VEGLVHVSEMDWTNKNIHPSKV--VSLGDEVEVM 58 (72)
T ss_pred EEEEEEEEEEeeE--EEEEcCCC-----CEEEEEEEeccCcccccCcccE--eCCCCEEEEE
Confidence 5899999999988 89999753 234444322111 11123 6777777775
No 265
>PRK07252 hypothetical protein; Provisional
Probab=30.03 E-value=3.6e+02 Score=23.15 Aligned_cols=48 Identities=13% Similarity=0.339 Sum_probs=32.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhH-hccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~-~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++...| +|+.|..+ +...+..+.. .+... .. ++.||.|.|.
T Consensus 6 iv~G~V~~V~~~G--~fVei~~~-----~~GllhiseLs~~~~~~~~~~--~~vGD~V~Vk 57 (120)
T PRK07252 6 KLKGTITGIKPYG--AFVALENG-----TTGLIHISEIKTGFIDNIHQL--LKVGEEVLVQ 57 (120)
T ss_pred EEEEEEEEEeCcE--EEEEECCC-----CEEEEEHHHcCCccccChhhc--cCCCCEEEEE
Confidence 5799999999988 89998543 3455554321 12222 23 8999999986
No 266
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=29.60 E-value=1.5e+02 Score=22.83 Aligned_cols=48 Identities=10% Similarity=0.228 Sum_probs=32.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-----hHh-HhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-----YDQ-VKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-----~~~-~~~~~L~~gd~V~V~ 89 (487)
.|.|.|.++-+.| +|+.|.++ +...+...... .+. .+. ++.|+.|.+.
T Consensus 3 ~V~g~V~~i~~~g--~~V~l~~~-----i~G~i~~~~ls~~~~~~~~~~~~--~~vG~~v~~k 56 (73)
T cd05703 3 EVTGFVNNVSKEF--VWLTISPD-----VKGRIPLLDLSDDVSVLEHPEKK--FPIGQALKAK 56 (73)
T ss_pred EEEEEEEEEeCCE--EEEEeCCC-----cEEEEEHHHcCCccccccCHHHh--CCCCCEEEEE
Confidence 5789999998777 89999654 56666543211 111 234 8999998876
No 267
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=29.24 E-value=43 Score=32.48 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=41.3
Q ss_pred ceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccc
Q 011364 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 397 ~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv 475 (487)
....+|+.++|| |+.- -. -|.. .|++. -|-++-+--|+|||.|.+-|.+||-|+
T Consensus 127 wGlGWEVWldGM-EvTQ-----FT------YFQQvGGiec-------------~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 127 WGLGWEVWLDGM-EVTQ-----FT------YFQQVGGLEC-------------KPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred cccceeEEEcCe-eeee-----ee------hhhhhCCeec-------------cceeeeeehhHHHHHHHHhCccceeEE
Confidence 456799999998 9852 11 1222 24432 244566788999999999999999998
Q ss_pred cccCC
Q 011364 476 IPFPR 480 (487)
Q Consensus 476 ~~FPr 480 (487)
..=..
T Consensus 182 ~W~~~ 186 (298)
T COG0752 182 EWNDG 186 (298)
T ss_pred eecCC
Confidence 76544
No 268
>PRK06386 replication factor A; Reviewed
Probab=29.11 E-value=3.3e+02 Score=28.26 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=50.7
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeec------CC--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCc
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA------QS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~------~g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd 84 (487)
.|+||.. .++.|.|.|+|-.+-. .| .+.=..|-|.|| +|..++... ... |..||
T Consensus 4 kI~DI~~--------~~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG--~I~fT~W~~------~~~--l~~Gd 65 (358)
T PRK06386 4 KISDINA--------ARQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETG--TVPFTAWEF------PDA--VKSGD 65 (358)
T ss_pred chhhcCC--------CCCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcc--eEEEEecCC------ccc--CCCCC
Confidence 4666654 3466889998885531 12 233345678886 477777653 124 89999
Q ss_pred EEEEEeeEeecCCCCceEEEEEeEE
Q 011364 85 SIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 85 ~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
+|.+.+.....-.+ ..+|.+.+-
T Consensus 66 ~v~i~na~v~~~~G--~~~Lnv~~~ 88 (358)
T PRK06386 66 VIEIKYCYSKEYNG--KIRIYFDSR 88 (358)
T ss_pred EEEEEeEEEeeECC--EEEEEEcCc
Confidence 99999988776544 678887533
No 269
>PRK08582 hypothetical protein; Provisional
Probab=28.52 E-value=1.6e+02 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.363 Sum_probs=31.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc--ch-HhH-hccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~--~~-~~~-~~~~L~~gd~V~V~ 89 (487)
.+.|.|..+...| +||.|-++ +..++..+.. .+ ..+ .. ++.||.|.|.
T Consensus 8 iv~G~V~~I~~fG--~fV~L~~~-----~~GlVhiSels~~~v~~~~~~--l~vGD~Vkvk 59 (139)
T PRK08582 8 KLQGKVTGITNFG--AFVELPEG-----KTGLVHISEVADNYVKDINDH--LKVGDEVEVK 59 (139)
T ss_pred EEEEEEEEEECCe--EEEEECCC-----CEEEEEeeccCcccccccccc--cCCCCEEEEE
Confidence 4799999999988 99999654 2344433321 11 111 23 8999999886
No 270
>PRK05807 hypothetical protein; Provisional
Probab=28.47 E-value=3.7e+02 Score=23.54 Aligned_cols=65 Identities=15% Similarity=0.369 Sum_probs=39.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc--ch-HhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~--~~-~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
.+.|.|..+...| +|+.| ++ .+.++..+.. .| ..+. ..++.||.|.|. +..... .+.++|....+
T Consensus 8 vv~G~Vt~i~~~G--afV~L-~~-----~~Glvhiseis~~~v~~~~-~~~kvGd~V~Vk--V~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 8 ILEGTVVNITNFG--AFVEV-EG-----KTGLVHISEVADTYVKDIR-EHLKEQDKVKVK--VISIDD-NGKISLSIKQA 75 (136)
T ss_pred EEEEEEEEEECCe--EEEEE-CC-----EEEEEEhhhcccccccCcc-ccCCCCCEEEEE--EEEECC-CCcEEEEEEec
Confidence 6889999998888 99999 43 2555654431 11 1121 138999999876 433332 24566665543
No 271
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=28.28 E-value=1.1e+02 Score=27.39 Aligned_cols=52 Identities=4% Similarity=0.129 Sum_probs=34.5
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
+.|++-...... ..+. |..||-|.|+|.+.... .+ ...+||.+++|.+|...
T Consensus 56 ~~V~~wg~~Ae~-v~~~--l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r 113 (148)
T PRK08182 56 APVELWHRDAEH-WARL--YQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR 113 (148)
T ss_pred EEEEEEhHHHHH-HHHh--cCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCc
Confidence 566665432111 1234 99999999999998652 11 13588999999987643
No 272
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=27.51 E-value=1.7e+02 Score=25.53 Aligned_cols=51 Identities=14% Similarity=0.368 Sum_probs=34.4
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch-HhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~-~~~~~~~L~~gd~V~V~ 89 (487)
.+.|+|..|-..| +||.|-.+... =|-++.=..+| +.+.. +|..|+-|.|.
T Consensus 8 ~l~GkItgI~~yG--AFV~l~~g~tG---LVHISEIa~~fVkdI~d-~L~vG~eV~vK 59 (129)
T COG1098 8 KLKGKITGITPYG--AFVELEGGKTG---LVHISEIADGFVKDIHD-HLKVGQEVKVK 59 (129)
T ss_pred eEEEEEEeeEecc--eEEEecCCCcc---eEEehHhhhhhHHhHHH-HhcCCCEEEEE
Confidence 5789999999999 99999987531 13333212233 22432 38999999887
No 273
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=27.15 E-value=65 Score=26.68 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=35.4
Q ss_pred EEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEE
Q 011364 50 IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (487)
Q Consensus 50 i~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vl 112 (487)
+.|+||.. .+|.++......+ +..|.|+.|++|.+.=....+-.+ .--|.+.+++|+
T Consensus 40 i~lSDG~~--~~~amLatqln~~--v~~g~l~~~sIirl~~y~~~~i~~--k~viiIldlevl 96 (97)
T cd04477 40 ILLSDGVY--YVQAMLATQLNPL--VESGQLQRGSIIRLKRFICNVIKG--KRILIILDLEVV 96 (97)
T ss_pred EEEEChhH--HHHHHHhhhhhhH--HhcCCccCCcEEEECeEEEEEecC--cEEEEEEeeEEe
Confidence 67899974 4799888654322 334559999999995433322111 124566677665
No 274
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=26.86 E-value=1.3e+02 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.490 Sum_probs=29.0
Q ss_pred CCCCcEEEEEeeEeecC---CC--CceEEEEEe---EEEEEccCCC
Q 011364 80 ITTGASIWIQGNVVPSQ---GS--KQKVELKVN---KIVLVGKSDP 117 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~---~~--~~~~el~~~---~i~vls~~~~ 117 (487)
|..||.|.|+|.+..+. .+ ....||.|+ ++++|++...
T Consensus 72 L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~~ 117 (175)
T PRK13732 72 LRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQ 117 (175)
T ss_pred cCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCCCC
Confidence 99999999999987652 12 125788888 8999887654
No 275
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=26.78 E-value=77 Score=23.35 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=17.8
Q ss_pred HHcCCCcccH-HHHHHHHhcCCCCc
Q 011364 429 DELKLNRDSY-WWYLDLRHYGSVPH 452 (487)
Q Consensus 429 ~~~g~~~~~~-~~yl~~~~~G~pP~ 452 (487)
+.+|+.+... -|...+.++|.||.
T Consensus 15 ~ALG~~~~~pPPWl~~Mq~~G~PPs 39 (54)
T smart00581 15 EALGLPPGQPPPWLYRMRRLGYPPG 39 (54)
T ss_pred HHcCCCCCCCChHHHHHHHHCCCCC
Confidence 4557765443 68999999999985
No 276
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=26.66 E-value=2.7e+02 Score=20.65 Aligned_cols=48 Identities=15% Similarity=0.336 Sum_probs=32.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc--c-hHhH-hccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G-YDQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~--~-~~~~-~~~~L~~gd~V~V~ 89 (487)
.+.|.|..+...| +|+.|.++ +...+..+.. . +... .. ++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~g--~~v~l~~~-----~~g~i~~~~~~~~~~~~~~~~--~~~Gd~v~~~ 54 (73)
T cd05691 3 IVTGKVTEVDAKG--ATVKLGDG-----VEGFLRAAELSRDRVEDATER--FKVGDEVEAK 54 (73)
T ss_pred EEEEEEEEEECCe--EEEEeCCC-----CEEEEEHHHCCCccccCHHHc--cCCCCEEEEE
Confidence 4689999998777 88888744 4566654321 1 1122 23 7999999886
No 277
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=26.11 E-value=2.3e+02 Score=21.22 Aligned_cols=48 Identities=10% Similarity=0.237 Sum_probs=30.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc--ch---H-hHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY---D-QVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~--~~---~-~~~~~~L~~gd~V~V~ 89 (487)
.|.|.|.++...| +|+.|-++ ++..+..+.. .| . .... ++.||.|.+.
T Consensus 3 iV~g~V~~i~~~g--i~v~l~~~-----i~g~i~~~~i~~~~~~~~~~~~~--~~~Gd~i~~k 56 (70)
T cd05702 3 LVKAKVKSVKPTQ--LNVQLADN-----VHGRIHVSEVFDEWPDGKNPLSK--FKIGQKIKAR 56 (70)
T ss_pred EEEEEEEEEECCc--EEEEeCCC-----cEEEEEHHHhccccccccChhHh--CCCCCEEEEE
Confidence 5789999998876 88888643 4555554321 11 1 1234 7889988876
No 278
>PLN02530 histidine-tRNA ligase
Probab=26.02 E-value=57 Score=35.20 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=30.5
Q ss_pred EEEEEEec-C-eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011364 399 AAMDMLVP-R-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 467 (487)
Q Consensus 399 ~~fdl~~~-G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~ 467 (487)
--|+.|.+ | .+-|++|+ ||+.|.+.+ |-. -.|..|||+|++||+.++-
T Consensus 341 ivFe~~~~~~~~~~I~gGG----RYD~Li~~f---gg~--------------~~pAvGFa~g~~~l~~~l~ 390 (487)
T PLN02530 341 IVFEGFDRAGKLRAICGGG----RYDRLLSTF---GGE--------------DTPACGFGFGDAVIVELLK 390 (487)
T ss_pred eEEEEEecCCCcceeeecc----cHHHHHHHh---CCC--------------CCCeeEEEEhHHHHHHHHH
Confidence 34777774 3 24678886 455554443 111 2378899999999887764
No 279
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=25.98 E-value=33 Score=37.69 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.7
Q ss_pred ccceeccHHHHHHHHcC
Q 011364 452 HAGFGLGFERLVQFATG 468 (487)
Q Consensus 452 ~~G~giGidRL~m~l~g 468 (487)
|.||++|+|||++.+..
T Consensus 442 ~~Gfa~gieRli~~l~e 458 (563)
T TIGR00418 442 HRAILGSIERFIAILLE 458 (563)
T ss_pred EeeccCcHHHHHHHHHH
Confidence 46999999999998854
No 280
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=25.79 E-value=1.7e+02 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=21.4
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCC
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~ 68 (487)
.|.|+|.++...| +|+.|-++ +...+..+
T Consensus 6 vV~G~V~~v~~~g--l~v~L~~g-----~~G~v~~s 34 (100)
T cd05693 6 LVLGQVKEITKLD--LVISLPNG-----LTGYVPIT 34 (100)
T ss_pred EEEEEEEEEcCCC--EEEECCCC-----cEEEEEHH
Confidence 6899999998887 88888654 45555543
No 281
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=25.71 E-value=1.9e+02 Score=21.57 Aligned_cols=48 Identities=10% Similarity=0.226 Sum_probs=31.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchH---h-HhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD---Q-VKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~---~-~~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++...| +|++|..+ ...++..+..... . -.. ++.||.|.+.
T Consensus 3 iv~g~V~~i~~~~--~~v~l~~~-----~~g~l~~~e~~~~~~~~~~~~--~~~Gd~i~~~ 54 (70)
T cd05687 3 IVKGTVVSVDDDE--VLVDIGYK-----SEGIIPISEFSDDPIENGEDE--VKVGDEVEVY 54 (70)
T ss_pred EEEEEEEEEeCCE--EEEEeCCC-----ceEEEEHHHhCccccCCHhHc--CCCCCEEEEE
Confidence 4689999998765 88998432 3566665432111 1 123 8899998887
No 282
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=25.30 E-value=2.6e+02 Score=33.62 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=52.8
Q ss_pred CEEEEEEEEeeeec----CCC-eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 011364 30 LMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (487)
Q Consensus 30 ~~V~v~GwV~~iR~----~g~-i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el 104 (487)
..|+|.|.|-.+-. +|+ +.=+.+.|++..-.+|...... .+-+.+.. |+.|++|.|+|.+....- .+++.+
T Consensus 240 ~~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~~-ed~~~~~~--ik~g~wvk~~g~v~~d~f-~~~l~m 315 (1444)
T COG2176 240 TRVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRDE-EDEKKFDG--IKKGMWVKARGNVQLDTF-TRDLTM 315 (1444)
T ss_pred cceEEEEEEEEEeeeecccCcEEEEEEEecCchheeehhhcccc-ccHHHHhh--cccCcEEEEEEEEEeccc-ccceEE
Confidence 34999999988754 343 4446678988543455554422 23344566 999999999999988743 245677
Q ss_pred EEeEEEEEc
Q 011364 105 KVNKIVLVG 113 (487)
Q Consensus 105 ~~~~i~vls 113 (487)
.+.+|.-+.
T Consensus 316 ~i~~I~ei~ 324 (1444)
T COG2176 316 IINDINEIE 324 (1444)
T ss_pred Ehhhhhhhh
Confidence 776665444
No 283
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=25.05 E-value=30 Score=40.27 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=24.3
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccC
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDAIPFP 479 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv~~FP 479 (487)
++-=-|+|+|||++++-|.+|+=|+ .|+
T Consensus 235 k~VDTG~GLER~~~v~qg~~t~ydt-~f~ 262 (902)
T TIGR03683 235 KIVDTGYGLERFVWASQGTPTAYDA-IFP 262 (902)
T ss_pred CceecCCCHHHHHHHHcCCCchHHH-HHH
Confidence 5556699999999999999999998 664
No 284
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=24.42 E-value=2.7e+02 Score=22.30 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=33.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch---Hh----HhccCCCCCcEEEEEe
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---DQ----VKSGLITTGASIWIQG 90 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~---~~----~~~~~L~~gd~V~V~G 90 (487)
.+.|+|.++-..-.-+|++|.++ ....+..+...+ .. -.. ++.||.|.|.=
T Consensus 10 iy~g~V~~i~~~~~GaFV~l~~g-----~~Gllh~seis~~~~~~v~~~~~~--~~~Gd~v~VqV 67 (88)
T cd04453 10 IYLGRVKKIVPGLQAAFVDIGLG-----KNGFLHLSDILPAYFKKHKKIAKL--LKEGQEILVQV 67 (88)
T ss_pred EEEEEEEEeccCCcEEEEEeCCC-----CEEEEEhHHcCchhccccCCHHHc--CCCCCEEEEEE
Confidence 67899999988633499999865 245555443222 11 123 88999988873
No 285
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=24.28 E-value=72 Score=34.99 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=24.7
Q ss_pred ceEEEecccccCCCCCCc----ccccccceeeEEccCCH
Q 011364 245 NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADL 279 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~ 279 (487)
.+-|||++||||= ++| -+-||+|.|+|. |++-
T Consensus 185 giaQiGk~fRNEI--sPr~~l~R~REF~q~EiE~-F~~p 220 (551)
T TIGR00389 185 GVAQIGKSFRNEI--SPRNGLFRVREFEQAEIEF-FVHP 220 (551)
T ss_pred eehhhhHhhhccc--CcccceEEeehhhhchhhe-ecCc
Confidence 4889999999993 344 357999999987 5543
No 286
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=23.97 E-value=64 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=21.4
Q ss_pred HHHHHHHcCCCcccHHHHHHHHhcCCCCc
Q 011364 424 LEGRLDELKLNRDSYWWYLDLRHYGSVPH 452 (487)
Q Consensus 424 ~~~~~~~~g~~~~~~~~yl~~~~~G~pP~ 452 (487)
++..+-.+...+.-+..|+++++-|.||-
T Consensus 3 iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e 31 (45)
T PF03790_consen 3 IKAKIASHPLYPRLLAAYIDCQKVGAPPE 31 (45)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhcCCCHH
Confidence 34455556666666788999999999985
No 287
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=23.81 E-value=2.2e+02 Score=21.22 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=31.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHh-HhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQ-VKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~-~~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++.+.| +|+.|.++ +-.+++.+.. .+.. ... ++.||.|.|.
T Consensus 3 ~v~g~V~~v~~~G--v~V~l~~~-----v~g~i~~~~l~~~~~~~~~~~--~~~Gd~i~~~ 54 (69)
T cd05697 3 VVKGTIRKLRPSG--IFVKLSDH-----IKGLVPPMHLADVRLKHPEKK--FKPGLKVKCR 54 (69)
T ss_pred EEEEEEEEEeccE--EEEEecCC-----cEEEEEHHHCCCccccCHHHc--CCCCCEEEEE
Confidence 4789999999887 89999654 3455653321 1111 234 8889988876
No 288
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=23.77 E-value=63 Score=33.64 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=31.3
Q ss_pred EEEEEEecCe--eeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHH
Q 011364 399 AAMDMLVPRI--GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 465 (487)
Q Consensus 399 ~~fdl~~~G~--~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~ 465 (487)
--|+++.+|. +.|++|+ ||+.+.+.+-. |. -.|.-||++|+|||+.+
T Consensus 322 iVFe~~~~~~~~~~I~~GG----RYD~Li~~fg~-~~---------------~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 322 FVFEIRAAGNGDPPLAGGG----RYDGLLTRLGA-GE---------------PIPAVGFSIWLDRLAAL 370 (373)
T ss_pred eEEEEEECCCCCCcccCCc----CHHHHHHHhCC-CC---------------CCCeeEEEEcHHHHHhh
Confidence 4589998764 4688887 56666555421 11 23788999999998653
No 289
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=23.20 E-value=2.3e+02 Score=20.40 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=31.6
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc---hHhH-hccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~---~~~~-~~~~L~~gd~V~V~ 89 (487)
.+.|+|.++...| .|+.+.++ +...+...... +... .. +++||.|.|.
T Consensus 3 ~~~g~V~~i~~~G--~fv~l~~~-----~~g~~~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (68)
T cd05685 3 VLEGVVTNVTDFG--AFVDIGVK-----QDGLIHISKMADRFVSHPSDV--VSVGDIVEVK 54 (68)
T ss_pred EEEEEEEEEeccc--EEEEcCCC-----CEEEEEHHHCCCccccCHHHh--cCCCCEEEEE
Confidence 4789999998887 88998644 35556543211 1111 23 7889999887
No 290
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=23.17 E-value=1.5e+02 Score=27.48 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=26.1
Q ss_pred CCCCcEEEEEeeEeecCC----CC--ceEEEEEe---EEEEEccC
Q 011364 80 ITTGASIWIQGNVVPSQG----SK--QKVELKVN---KIVLVGKS 115 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~----~~--~~~el~~~---~i~vls~~ 115 (487)
|+.||.|.|+|.+..+.= +. ..+||.+. ++++|+..
T Consensus 72 L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 72 LRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred cCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 999999999999987531 11 24777666 67777654
No 291
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.90 E-value=63 Score=34.37 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASD 179 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~ 179 (487)
-++...++..||.=...+||.||-||.+-...
T Consensus 192 ~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~ 223 (560)
T KOG1637|consen 192 TRIYNTLVDFIRAEYRKRGFTEVITPNIYNKK 223 (560)
T ss_pred chHHHHHHHHHHHHHHhcCCceecCcchhhhh
Confidence 46778899999999999999999999998753
No 292
>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB3 has a pronounced groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for strong ssDNA binding []. ; PDB: 1IYJ_D 1MIU_A.
Probab=22.77 E-value=5.5e+02 Score=22.92 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=46.7
Q ss_pred CCCEEEEEEEEeeeecCCCe-EEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 28 VGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~i-~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
.=.+|=+-|-|-++.+..+. .-+-|.|... +-+.|.+..+...|..-.- |++|.+|.++----++.+..+--.+.+
T Consensus 17 p~~EvD~VG~VvsV~~~~~f~~~vYLsD~~~-Nll~Ikfw~~l~~~~~eDi--lk~~~liA~SNLqwR~~s~s~iP~~~A 93 (143)
T PF09104_consen 17 PYGEVDTVGFVVSVSKKQGFQPLVYLSDECH-NLLAIKFWTGLNQYGYEDI--LKPGSLIAASNLQWRPESTSGIPTLFA 93 (143)
T ss_dssp CCCEEEEEEEEEEEE--TTS--EEEEE-TTS--EEEEEESS-------SS-----TT-EEEEEEEEE-S-TTSSS-EEEE
T ss_pred CccccceEEEEEEEEecCCCceeEEeecCCc-cEEEEEeccCccccchhhh--cCcceEEEEeeeEeecccccCCCeeEe
Confidence 34668899999999765333 4366889875 4577777765433221123 889999999874444433333455788
Q ss_pred eEEEEEccCC
Q 011364 107 NKIVLVGKSD 116 (487)
Q Consensus 107 ~~i~vls~~~ 116 (487)
.++++.+.+.
T Consensus 94 ~d~S~FS~nP 103 (143)
T PF09104_consen 94 TDLSVFSANP 103 (143)
T ss_dssp ECCEEEESS-
T ss_pred ccceeeecCc
Confidence 9999999875
No 293
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=21.77 E-value=2.8e+02 Score=28.24 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=36.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHh---HhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ---VKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~---~~~~~L~~gd~V~V~ 89 (487)
.|.|.|.++-+.| +|++|-...+ +..++..+...+.. ++. .++.|+-|.|.
T Consensus 20 vV~g~V~~I~d~G--afV~L~EY~g---vEGlIhiSElS~~ri~~i~d-~vkvGd~v~vk 73 (319)
T PTZ00248 20 LVMVKVVRITEMG--AYVSLLEYDD---IEGMILMSELSKRRIRSINK-LIRVGRHEVVV 73 (319)
T ss_pred EEEEEEEEEeCCe--EEEEecCCCC---cEEEEEHHHhcccccCCHHH-hcCCCCEEEEE
Confidence 6789999999998 9999953322 67888765533222 322 38999998887
No 294
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=21.13 E-value=3.3e+02 Score=26.89 Aligned_cols=51 Identities=10% Similarity=0.270 Sum_probs=35.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc---hHhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~---~~~~~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++.+.| +|+.|.+..+ ++.++..+... +..+.. .++.||.|.|.
T Consensus 11 iV~G~V~~I~~~G--~fV~L~e~~g---ieGlI~iSEls~~~i~~i~~-~~kvGd~V~vk 64 (262)
T PRK03987 11 LVVGTVKEVKDFG--AFVTLDEYPG---KEGFIHISEVASGWVKNIRD-HVKEGQKVVCK 64 (262)
T ss_pred EEEEEEEEEECCE--EEEEECCCCC---cEEEEEHHHcCcccccCHHH-hCCCCCEEEEE
Confidence 5789999999888 8999987533 57777654321 111221 38999999887
No 295
>KOG1894 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.63 E-value=1.1e+02 Score=31.10 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCC----CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc--
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK-- 224 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 224 (487)
+..--.+.++-|+-.+ |+.||.|+...+ ...+..|.+- +..||+.
T Consensus 106 ~~~~k~a~~el~r~kd--e~ntp~l~qr~s~s~~~~~~n~qsIy---------------------------~~~~~D~~~ 156 (412)
T KOG1894|consen 106 ADRPKYALQELFRLKD--ESNTPVLQQRLSASAFGAIANIQSIY---------------------------NQGFYDQED 156 (412)
T ss_pred hhhhhHHHHHHHHHhh--ccCChHHhhcccccchhhcccceeec---------------------------cCCccCCCC
Confidence 3333444555555444 999999987543 2233344431 1245554
Q ss_pred -ccccccchhhhHHHHhccC-------CceEE---EecccccCC
Q 011364 225 -PAFLTVSGQLNAETYATAL-------SNVYT---FGPTFRAEN 257 (487)
Q Consensus 225 -~~~L~~Spql~l~ll~~g~-------~kvfe---I~~~FR~E~ 257 (487)
++.|.+|+-+.+++.--+| ..|++ .++.|=||.
T Consensus 157 ~~laL~i~~i~~k~~krv~f~d~a~e~~~v~s~~tl~~l~~ne~ 200 (412)
T KOG1894|consen 157 VVLALPISKIFFKDLKRVGFDDNAPEQLEVVSGRTLSNLFYNET 200 (412)
T ss_pred ccccccHhhhhhhhhhhhcCCccchhhheeeccccccccccCcc
Confidence 7889999999977654444 35666 677777774
No 296
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=20.60 E-value=1.9e+02 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=22.2
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeec
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~ 95 (487)
+.|++-.+.... ..+. |+.||-|.|+|.+..+
T Consensus 55 i~V~~Wg~~Ae~-va~~--L~KGd~V~V~GrL~~r 86 (186)
T PRK07772 55 LRCSIWRQAAEN-VAES--LTKGMRVIVTGRLKQR 86 (186)
T ss_pred EEEEEecHHHHH-HHHh--cCCCCEEEEEEEEEcC
Confidence 667666543211 1345 9999999999999865
No 297
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=20.39 E-value=3.6e+02 Score=20.43 Aligned_cols=50 Identities=16% Similarity=0.438 Sum_probs=32.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc---hHhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~---~~~~~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++.+.| +|+.| ++.. +...+..+... ++.... .++.||.|.|.
T Consensus 6 ~~~g~V~~i~~fG--~fv~l-~~~~---~eGlvh~sel~~~~~~~~~~-~~~~Gd~v~vk 58 (73)
T cd05686 6 IFKGEVASVTEYG--AFVKI-PGCR---KQGLVHKSHMSSCRVDDPSE-VVDVGEKVWVK 58 (73)
T ss_pred EEEEEEEEEEeee--EEEEE-CCCC---eEEEEEchhhCCCcccCHhh-EECCCCEEEEE
Confidence 5689999999988 89999 5531 34555544321 222221 26889988886
No 298
>PTZ00148 40S ribosomal protein S8; Provisional
Probab=20.32 E-value=1.6e+02 Score=27.76 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=33.4
Q ss_pred EEeeeecCC-C-------eEEEEEEcCCCC-----eeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEee
Q 011364 37 WVRTLRAQS-S-------VTFIEVNDGSCL-----SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (487)
Q Consensus 37 wV~~iR~~g-~-------i~Fi~lrD~~~~-----~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~ 94 (487)
+|+.+|..| + +-+..+.|++.. .-+.||-+++..+|..-+- |+.|+||.+...+.+
T Consensus 42 ri~~VR~RGGN~K~Ralr~~~gNv~~~se~~tkk~kIl~Vv~N~sNne~vRrni--itKGAII~tda~Pfr 110 (205)
T PTZ00148 42 RVRPVRCRGGNFKFRALRLDTGNFSWGSQGIAKKTRILDVVYNASNNELVRTKT--LVKNAIVQIDAAPFK 110 (205)
T ss_pred EEEEEEccCCceeeEEEeecceEEeecCCCeEEeeEEEEEEecCcCHHHHhhcc--eeeceEEeeccchHH
Confidence 778888764 3 333444444321 1255666666555544334 899999999877664
No 299
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.32 E-value=5.6e+02 Score=24.02 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=42.5
Q ss_pred CEEEEEEEEeeeecCC---CeEEEEEEcCCCCeeeEEEEeCCcc-chHhHhccCCCCCcEEEEEeeEeec
Q 011364 30 LMIVVAGWVRTLRAQS---SVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPS 95 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~g---~i~Fi~lrD~~~~~~lQvv~~~~~~-~~~~~~~~~L~~gd~V~V~G~~~~~ 95 (487)
..|-|.|-|.++-.-| .+.=+.+.|++|. +=|+...-.+ ....++. +..+|.|.|.|++..=
T Consensus 46 nRifivGtltek~~i~ed~~~~R~rVvDpTGs--F~Vyag~yqPEa~a~l~~--ve~~~~VaViGKi~~y 111 (196)
T COG3390 46 NRIFIVGTLTEKEGIGEDREYWRIRVVDPTGS--FYVYAGQYQPEAKAFLED--VEVPDLVAVIGKIRTY 111 (196)
T ss_pred eEEEEEEEEEeccCcCCcccEEEEEEecCCce--EEEEcCCCChHHHHHHHh--ccCCceEEEeccccee
Confidence 4678899998886644 3666778899974 4443332222 2344667 9999999999998653
No 300
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=20.19 E-value=4e+02 Score=20.34 Aligned_cols=51 Identities=8% Similarity=0.174 Sum_probs=31.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcC-CCCeeeEEEEeCCccc---h-HhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDG-SCLSNMQCVMTSDAEG---Y-DQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~-~~~~~lQvv~~~~~~~---~-~~~~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++...| +|+.|-+. .+ +...+..+... + ..... .++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~fv~l~~~~~~---~~gll~~s~l~~~~~~~~~~~-~~~~Gd~v~v~ 58 (79)
T cd05684 3 IYKGKVTSIMDFG--CFVQLEGLKGR---KEGLVHISQLSFEGRVANPSD-VVKRGQKVKVK 58 (79)
T ss_pred EEEEEEEEEEeee--EEEEEeCCCCC---cEEEEEhHhccCCCCcCChhh-eeCCCCEEEEE
Confidence 4689999999887 89999643 12 35555543321 1 11111 26888888876
Done!