Query 011364
Match_columns 487
No_of_seqs 217 out of 1399
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:36:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nem_A Aspartyl-tRNA synthetas 100.0 1E-104 4E-109 828.9 39.6 424 9-486 2-437 (438)
2 3m4p_A Ehasnrs, asparaginyl-tR 100.0 9E-104 3E-108 825.6 36.1 425 10-486 18-455 (456)
3 2xgt_A Asparaginyl-tRNA synthe 100.0 1E-101 4E-106 808.2 37.1 422 13-487 2-435 (435)
4 1wyd_A Hypothetical aspartyl-t 100.0 3E-101 1E-105 802.4 37.9 423 10-487 3-429 (429)
5 3i7f_A Aspartyl-tRNA synthetas 100.0 4E-100 1E-104 806.6 36.6 426 10-486 49-547 (548)
6 1x54_A Asparaginyl-tRNA synthe 100.0 1.1E-99 4E-104 792.4 37.8 425 10-487 3-434 (434)
7 1n9w_A Aspartyl-tRNA synthetas 100.0 9E-100 3E-104 789.7 34.1 412 11-487 2-422 (422)
8 3bju_A Lysyl-tRNA synthetase; 100.0 2.4E-98 8E-103 796.4 39.0 440 2-484 25-508 (521)
9 4ex5_A Lysine--tRNA ligase; st 100.0 1.1E-98 4E-103 794.7 36.1 430 3-483 56-527 (529)
10 1e1o_A Lysyl-tRNA synthetase, 100.0 3.4E-97 1E-101 783.9 37.8 431 2-484 33-503 (504)
11 1eov_A ASPRS, aspartyl-tRNA sy 100.0 8.9E-97 3E-101 780.1 38.3 431 10-487 22-487 (487)
12 3a74_A Lysyl-tRNA synthetase; 100.0 9.3E-97 3E-101 779.5 38.0 440 2-483 25-492 (493)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 7.3E-95 2.5E-99 777.7 40.3 413 10-486 3-556 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 7.6E-94 2.6E-98 772.2 39.7 435 10-486 2-562 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 1.2E-83 4.1E-88 688.9 36.8 438 1-484 1-571 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 5.7E-74 2E-78 581.0 24.5 303 138-482 27-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 6.7E-67 2.3E-71 520.6 24.0 279 133-486 1-292 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 4.5E-25 1.5E-29 219.3 6.0 158 95-278 20-189 (290)
19 12as_A Asparagine synthetase; 99.9 3.6E-21 1.2E-25 186.8 19.1 281 147-478 4-316 (330)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.7 9.9E-18 3.4E-22 165.8 9.8 197 152-480 74-278 (288)
21 1b7y_A Phers, protein (phenyla 99.7 3.2E-16 1.1E-20 158.3 13.0 131 152-293 104-244 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.6 1.8E-14 6.3E-19 142.9 13.9 122 151-293 55-183 (294)
23 3pco_A Phenylalanyl-tRNA synth 99.5 3E-14 1E-18 142.3 10.1 198 152-475 110-315 (327)
24 3l4g_A Phenylalanyl-tRNA synth 99.4 1.5E-12 5E-17 136.6 13.2 59 399-476 417-478 (508)
25 3cmq_A Phenylalanyl-tRNA synth 99.0 2.3E-09 7.8E-14 110.7 11.9 104 152-276 51-164 (415)
26 2du3_A O-phosphoseryl-tRNA syn 98.6 5.1E-07 1.7E-11 95.1 15.7 46 245-290 207-254 (534)
27 2du7_A O-phosphoseryl-tRNA syn 98.6 6E-07 2.1E-11 94.6 15.6 45 245-289 219-265 (549)
28 2odr_B Phosphoseryl-tRNA synth 98.5 9.3E-07 3.2E-11 93.9 13.1 46 245-290 226-273 (648)
29 2odr_A Phosphoseryl-tRNA synth 98.5 9.9E-07 3.4E-11 93.8 13.1 46 245-290 226-273 (665)
30 2odr_D Phosphoseryl-tRNA synth 98.5 1E-06 3.5E-11 93.8 13.1 46 245-290 226-273 (685)
31 2odr_C Phosphoseryl-tRNA synth 98.4 1.2E-06 4E-11 93.6 13.0 46 245-290 226-273 (701)
32 1evl_A Threonyl-tRNA synthetas 98.2 1.6E-06 5.5E-11 89.4 7.5 115 145-291 27-161 (401)
33 2i4l_A Proline-tRNA ligase; al 98.2 3.8E-06 1.3E-10 88.1 9.2 115 144-289 63-197 (458)
34 1z7m_A ATP phosphoribosyltrans 98.2 8.6E-06 2.9E-10 82.2 11.3 102 146-279 34-152 (344)
35 2dq3_A Seryl-tRNA synthetase; 98.1 3.4E-06 1.2E-10 87.5 8.1 118 145-293 169-306 (425)
36 1qe0_A Histidyl-tRNA synthetas 98.1 2.4E-06 8.3E-11 88.5 6.4 116 146-291 14-152 (420)
37 1hc7_A Prolyl-tRNA synthetase; 98.1 1.5E-05 5E-10 84.0 12.0 121 145-290 41-179 (477)
38 1nyr_A Threonyl-tRNA synthetas 98.1 8E-06 2.7E-10 89.3 9.2 119 144-293 267-406 (645)
39 1wu7_A Histidyl-tRNA synthetas 98.0 2E-05 6.9E-10 82.0 10.9 104 145-278 17-133 (434)
40 2j3l_A Prolyl-tRNA synthetase; 98.0 1.8E-05 6.2E-10 85.3 10.7 115 144-289 43-177 (572)
41 3uh0_A Threonyl-tRNA synthetas 98.0 9.6E-06 3.3E-10 85.0 8.2 126 144-297 60-205 (460)
42 3od1_A ATP phosphoribosyltrans 97.9 4E-05 1.4E-09 78.8 11.0 102 145-278 21-137 (400)
43 1h4v_B Histidyl-tRNA synthetas 97.9 2.4E-05 8.3E-10 81.0 9.3 103 146-278 15-135 (421)
44 1htt_A Histidyl-tRNA synthetas 97.9 2.8E-05 9.7E-10 80.5 9.7 103 146-278 16-135 (423)
45 1nj8_A Proline-tRNA synthetase 97.9 4.3E-05 1.5E-09 80.1 10.8 123 144-292 34-177 (459)
46 1nj1_A PROR, proline-tRNA synt 97.9 3.5E-05 1.2E-09 81.6 9.6 122 145-292 68-209 (501)
47 4e51_A Histidine--tRNA ligase; 97.8 3.7E-05 1.3E-09 80.8 9.4 119 145-292 43-182 (467)
48 3net_A Histidyl-tRNA synthetas 97.8 4.2E-05 1.4E-09 80.3 9.5 134 145-293 23-175 (465)
49 3lss_A Seryl-tRNA synthetase; 97.8 2.4E-05 8E-10 81.8 7.3 118 145-293 205-346 (484)
50 3lc0_A Histidyl-tRNA synthetas 97.8 5.7E-05 2E-09 79.0 10.0 101 146-278 41-157 (456)
51 1qf6_A THRRS, threonyl-tRNA sy 97.8 2.7E-05 9.2E-10 85.0 7.7 118 144-293 267-404 (642)
52 1ses_A Seryl-tRNA synthetase; 97.8 3.9E-05 1.3E-09 79.3 8.0 122 145-293 163-302 (421)
53 3rac_A Histidine-tRNA ligase; 97.8 5.3E-05 1.8E-09 77.2 8.9 116 147-292 36-176 (373)
54 3qne_A Seryl-tRNA synthetase, 97.7 4.1E-05 1.4E-09 80.0 7.2 118 145-293 182-323 (485)
55 3a32_A Probable threonyl-tRNA 97.7 4.6E-05 1.6E-09 80.1 7.7 113 146-290 47-182 (471)
56 3ial_A Prolyl-tRNA synthetase; 97.7 6.6E-05 2.2E-09 79.4 8.7 125 144-293 51-194 (518)
57 1wle_A Seryl-tRNA synthetase; 97.7 0.00019 6.6E-09 75.5 12.1 121 144-293 215-358 (501)
58 2dq0_A Seryl-tRNA synthetase; 97.7 5E-05 1.7E-09 79.3 6.9 118 145-293 190-327 (455)
59 4g84_A Histidine--tRNA ligase, 97.6 0.00023 7.9E-09 74.4 11.5 118 144-292 24-159 (464)
60 4hvc_A Bifunctional glutamate/ 97.6 0.00018 6.1E-09 76.2 10.3 123 145-292 58-199 (519)
61 3err_A Fusion protein of micro 97.6 0.0002 6.7E-09 76.2 10.3 117 144-293 271-411 (536)
62 3vbb_A Seryl-tRNA synthetase, 97.6 0.00019 6.4E-09 75.6 9.3 127 145-293 198-348 (522)
63 4g85_A Histidine-tRNA ligase, 97.5 0.00029 1E-08 74.9 10.2 117 144-291 77-211 (517)
64 2cja_A Seryl-tRNA synthetase; 97.5 0.00017 5.7E-09 76.3 7.5 151 144-296 227-399 (522)
65 1ati_A Glycyl-tRNA synthetase; 97.4 0.00038 1.3E-08 73.7 10.1 34 146-179 37-72 (505)
66 3mf2_A BLL0957 protein; aminoa 97.0 0.00081 2.8E-08 66.9 6.3 143 145-295 61-219 (346)
67 3kf6_A Protein STN1; OB fold, 96.7 0.019 6.6E-07 50.9 12.0 79 30-114 48-128 (159)
68 3kdf_D Replication protein A 3 96.7 0.018 6.2E-07 49.4 11.4 99 10-114 7-111 (132)
69 3ikl_A DNA polymerase subunit 96.6 0.0051 1.7E-07 63.8 9.2 47 245-293 175-227 (459)
70 1usy_A ATP phosphoribosyltrans 96.6 0.005 1.7E-07 59.8 8.7 103 154-292 6-119 (275)
71 3dm3_A Replication factor A; p 96.6 0.022 7.5E-07 47.0 11.1 89 10-117 4-102 (105)
72 4gop_B Putative uncharacterize 96.6 0.021 7.2E-07 49.3 11.3 98 9-113 9-115 (136)
73 1g5h_A Mitochondrial DNA polym 96.4 0.0053 1.8E-07 64.0 7.9 139 146-296 60-220 (454)
74 2zt5_A Glycyl-tRNA synthetase; 96.3 0.0061 2.1E-07 66.8 7.9 35 144-178 97-132 (693)
75 3e0e_A Replication protein A; 96.2 0.05 1.7E-06 44.0 11.0 84 12-115 3-96 (97)
76 2rhq_B Phenylalanyl-tRNA synth 95.8 0.029 1E-06 62.4 10.5 112 151-293 495-632 (795)
77 2k50_A Replication factor A re 95.8 0.038 1.3E-06 46.0 8.7 80 28-115 15-105 (115)
78 3l4g_B Phenylalanyl-tRNA synth 95.5 0.041 1.4E-06 59.2 9.8 112 152-292 394-521 (589)
79 1nnx_A Protein YGIW; structura 95.4 0.052 1.8E-06 44.9 7.7 84 12-114 26-109 (109)
80 3ig2_A Phenylalanyl-tRNA synth 95.3 0.047 1.6E-06 50.8 8.3 113 152-293 7-151 (213)
81 3au7_A TIAS, putative uncharac 94.8 0.21 7.3E-06 50.6 11.8 77 28-115 283-362 (402)
82 2pi2_A Replication protein A 3 94.8 0.2 7E-06 48.2 11.3 99 10-114 47-151 (270)
83 3ica_A Phenylalanyl-tRNA synth 94.5 0.09 3.1E-06 48.8 7.9 120 152-293 7-151 (213)
84 3kf8_A Protein STN1; OB fold; 94.0 0.34 1.2E-05 44.9 10.5 83 29-115 85-185 (220)
85 2kbn_A Conserved protein; nucl 92.8 1 3.5E-05 37.0 10.5 79 29-118 15-97 (109)
86 1o7i_A SSB, SSO2364, single st 92.4 0.71 2.4E-05 38.5 9.3 75 30-116 13-97 (119)
87 2k75_A Uncharacterized protein 92.1 1.5 5E-05 35.8 10.6 88 12-122 4-100 (106)
88 1ynx_A Replication factor-A pr 91.6 0.34 1.2E-05 40.2 6.3 92 11-116 4-110 (114)
89 3kdf_A Replication protein A 1 90.9 0.83 2.8E-05 38.4 8.0 71 27-115 20-90 (121)
90 1b7y_B Phers, protein (phenyla 90.7 0.97 3.3E-05 50.1 10.5 107 150-293 490-620 (785)
91 3fhw_A Primosomal replication 90.4 0.68 2.3E-05 38.5 6.9 57 61-121 49-105 (115)
92 4gop_A Putative uncharacterize 88.9 1.1 3.9E-05 37.1 7.2 67 27-107 16-82 (114)
93 2pi2_E Replication protein A 1 84.1 5.6 0.00019 34.3 9.1 71 26-114 40-110 (142)
94 1jmc_A Protein (replication pr 82.3 2.4 8.1E-05 39.7 6.7 93 10-116 7-114 (246)
95 2hpi_A DNA polymerase III alph 81.8 1.3 4.6E-05 51.0 5.6 80 27-115 1040-1124(1220)
96 1sr3_A APO-CCME; OB fold, beta 80.9 13 0.00045 31.6 10.1 76 26-119 25-105 (136)
97 3k8a_A Putative primosomal rep 80.5 2.6 8.9E-05 34.2 5.4 47 61-112 55-101 (103)
98 1j6q_A Cytochrome C maturation 80.0 14 0.00047 31.5 10.0 90 12-119 13-110 (136)
99 1txy_A Primosomal replication 73.6 7.7 0.00026 31.2 6.5 51 61-114 50-102 (104)
100 3od1_A ATP phosphoribosyltrans 72.9 1.9 6.4E-05 43.9 3.1 49 399-469 281-330 (400)
101 3tqy_A Single-stranded DNA-bin 72.4 18 0.0006 31.6 9.0 52 61-115 58-115 (158)
102 3f2b_A DNA-directed DNA polyme 72.2 28 0.00097 39.5 12.6 82 29-115 17-104 (1041)
103 2k52_A Uncharacterized protein 71.1 9.5 0.00032 29.0 6.1 48 33-89 8-55 (80)
104 4gop_C Putative uncharacterize 69.1 5.5 0.00019 40.9 5.7 93 11-116 3-109 (444)
105 3mxn_B RECQ-mediated genome in 66.5 28 0.00095 29.9 8.4 73 30-115 59-131 (150)
106 3pco_B Phenylalanyl-tRNA synth 64.8 11 0.00036 41.8 7.2 111 154-293 494-628 (795)
107 2khj_A 30S ribosomal protein S 64.7 6.1 0.00021 32.1 4.0 79 1-89 1-85 (109)
108 3f1z_A Putative nucleic acid-b 64.4 28 0.00094 27.4 7.4 71 25-97 45-120 (133)
109 1v1q_A Primosomal replication 64.3 27 0.00091 29.6 8.1 52 61-115 67-120 (134)
110 1wjj_A Hypothetical protein F2 62.6 59 0.002 27.8 10.1 85 12-115 17-120 (145)
111 3en2_A Probable primosomal rep 61.8 17 0.00058 29.3 6.0 46 61-110 50-95 (101)
112 1h4v_B Histidyl-tRNA synthetas 57.5 8 0.00027 39.1 4.3 18 451-468 301-318 (421)
113 3lc0_A Histidyl-tRNA synthetas 56.5 3 0.0001 43.1 0.8 49 400-468 301-351 (456)
114 2fxq_A Single-strand binding p 55.9 27 0.00091 33.0 7.4 82 30-115 129-230 (264)
115 1z7m_A ATP phosphoribosyltrans 55.4 4.9 0.00017 39.8 2.2 47 399-467 288-335 (344)
116 4gs3_A Single-stranded DNA-bin 52.4 87 0.003 25.3 8.9 79 29-113 11-106 (107)
117 3net_A Histidyl-tRNA synthetas 51.5 5.6 0.00019 41.1 1.9 48 400-468 310-360 (465)
118 2b29_A Replication protein A 7 51.1 66 0.0022 26.6 8.2 61 50-115 47-108 (123)
119 2k4k_A GSP13, general stress p 49.3 30 0.001 28.9 5.9 48 33-89 10-61 (130)
120 1j5w_A Glycyl-tRNA synthetase 48.8 8.7 0.0003 36.2 2.5 57 396-477 134-191 (298)
121 3vdy_A SSB, single-stranded DN 48.0 26 0.00088 28.6 5.2 52 61-115 52-109 (116)
122 3rf1_A Glycyl-tRNA synthetase 47.9 9.4 0.00032 36.2 2.6 59 396-479 146-205 (311)
123 2kct_A Cytochrome C-type bioge 45.4 1.1E+02 0.0038 24.1 10.7 74 27-116 6-86 (94)
124 3rac_A Histidine-tRNA ligase; 44.1 9.5 0.00032 38.2 2.2 47 399-467 317-364 (373)
125 4g84_A Histidine--tRNA ligase, 41.6 8.8 0.0003 39.3 1.6 17 451-467 336-352 (464)
126 2khi_A 30S ribosomal protein S 41.4 37 0.0013 27.6 5.1 52 27-89 29-85 (115)
127 2vw9_A Single-stranded DNA bin 40.9 35 0.0012 28.7 5.0 52 61-115 51-108 (134)
128 1z9f_A Single-strand binding p 40.2 42 0.0014 29.0 5.5 52 61-115 65-122 (153)
129 4e51_A Histidine--tRNA ligase; 39.7 12 0.00039 38.8 2.1 20 450-469 327-346 (467)
130 2i4l_A Proline-tRNA ligase; al 39.5 8.6 0.0003 39.6 1.1 19 450-468 330-349 (458)
131 4g85_A Histidine-tRNA ligase, 38.8 13 0.00043 38.9 2.3 18 450-467 388-405 (517)
132 3ull_A DNA binding protein; DN 37.5 29 0.00098 29.1 3.9 36 80-115 86-127 (132)
133 2a19_A EIF-2- alpha, eukaryoti 37.2 59 0.002 28.7 6.1 55 28-89 15-71 (175)
134 1wu7_A Histidyl-tRNA synthetas 37.1 13 0.00043 37.9 1.8 19 451-469 306-324 (434)
135 1gm5_A RECG; helicase, replica 36.4 40 0.0014 37.1 5.9 61 28-95 164-230 (780)
136 1kl9_A Eukaryotic translation 35.0 60 0.0021 28.8 5.8 54 28-89 15-71 (182)
137 3koj_A Uncharacterized protein 34.9 87 0.003 25.3 6.3 47 61-110 55-107 (108)
138 1htt_A Histidyl-tRNA synthetas 34.3 13 0.00046 37.5 1.5 18 451-468 300-317 (423)
139 2j3l_A Prolyl-tRNA synthetase; 34.0 12 0.0004 39.6 1.1 19 450-468 435-454 (572)
140 4dka_C RNA-editing complex pro 32.4 1.9E+02 0.0066 23.1 8.7 68 28-96 2-77 (105)
141 2eqs_A ATP-dependent RNA helic 31.2 1E+02 0.0035 24.3 6.2 55 27-89 11-70 (103)
142 1yfs_A Alanyl-tRNA synthetase; 30.7 20 0.00068 36.7 2.0 48 243-291 59-116 (465)
143 2cqo_A Nucleolar protein of 40 30.4 35 0.0012 28.0 3.2 53 27-89 21-77 (119)
144 2ztg_A Alanyl-tRNA synthetase; 29.5 11 0.00038 41.1 -0.1 67 396-479 196-266 (739)
145 1wi5_A RRP5 protein homolog; S 29.3 61 0.0021 26.3 4.6 50 33-89 24-77 (119)
146 1luz_A Protein K3, protein K2; 28.5 2E+02 0.0067 22.0 7.5 53 27-89 10-66 (88)
147 1qe0_A Histidyl-tRNA synthetas 28.3 14 0.00048 37.2 0.5 17 451-467 302-318 (420)
148 3hy0_A Alanyl-tRNA synthetase; 26.8 24 0.00081 35.9 1.8 48 242-290 57-114 (441)
149 3eiv_A Single-stranded DNA-bin 26.3 1.2E+02 0.0042 27.3 6.3 48 61-111 55-108 (199)
150 3ulp_A Single-strand binding p 25.9 91 0.0031 25.5 5.1 52 61-115 56-120 (124)
151 2zze_A Alanyl-tRNA synthetase; 25.5 18 0.00063 39.5 0.8 28 451-479 245-272 (752)
152 1qvc_A Single stranded DNA bin 24.6 43 0.0015 28.5 2.9 83 30-115 6-115 (145)
153 2rhq_B Phenylalanyl-tRNA synth 23.3 43 0.0015 36.9 3.2 46 32-89 44-89 (795)
154 2vl6_A SSO MCM N-TER, minichro 23.2 1.6E+02 0.0053 27.5 6.8 35 80-114 225-267 (268)
155 3m7n_A Putative uncharacterize 21.7 1.7E+02 0.0057 25.6 6.3 54 33-89 60-121 (179)
156 1qzg_A Protection of telomeres 21.4 4.3E+02 0.015 23.4 9.9 77 12-97 30-118 (187)
157 3lgj_A Single-stranded DNA-bin 20.3 1.5E+02 0.005 25.9 5.5 83 30-115 24-135 (169)
No 1
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1e-104 Score=828.90 Aligned_cols=424 Identities=29% Similarity=0.488 Sum_probs=382.0
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhHhccCCCCCcE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGAS 85 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~~~~~L~~gd~ 85 (487)
.++++|+||.+. +.|+.|+|+|||+++|.+||++|++|||++| .||||++++.. .|+.++. |+.||+
T Consensus 2 ~rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDG--IVQITAPKKKVDPELFKLIPK--LRSEDV 71 (438)
T ss_dssp CCSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSCHHHHHHGGG--CCTTCE
T ss_pred ceEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999875 6799999999999999999999999999997 49999997642 3666777 999999
Q ss_pred EEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccc---cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhh
Q 011364 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 162 (487)
Q Consensus 86 V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff 162 (487)
|.|+|+|.++++..+++||++++++|||+|..++|++.+. ++.+.++++||||+|++.++++|++||++++++|+||
T Consensus 72 V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~ 151 (438)
T 3nem_A 72 VAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF 151 (438)
T ss_dssp EEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887779999999999999998778887554 6788888999999999999999999999999999999
Q ss_pred hcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-HHhc
Q 011364 163 QENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYAT 241 (487)
Q Consensus 163 ~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~ 241 (487)
.++||+||+||+|+++++||+++.|.+ +||+.++||+|||||||| ++++
T Consensus 152 ~~~gF~EVeTPiL~~~~~eg~~~~f~~------------------------------~~~~~~~yL~~Spql~~q~l~~~ 201 (438)
T 3nem_A 152 HENGFIEIHTPKIIATATEGGTELFPM------------------------------KYFEEDAFLAQSPQLYKQIMMAS 201 (438)
T ss_dssp HHTTCEECCCCSEESSCSSCSSSCCEE------------------------------EETTEEEEECSCSHHHHHHGGGT
T ss_pred HHCCcEEEeCCEEecCCCCCCccceeE------------------------------eeCCccEEEecChHHHHHHHHhc
Confidence 999999999999999999999998875 477899999999999997 5679
Q ss_pred cCCceEEEecccccCCCCCCcccccccceeeEEccCC-HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhh
Q 011364 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 320 (487)
Q Consensus 242 g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 320 (487)
|++||||||||||||+++++||||||||||||++|+| ++|+|+++|+||+++++.+.+.+..++.+.+.. +
T Consensus 202 g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~--------l 273 (438)
T 3nem_A 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE--------L 273 (438)
T ss_dssp TCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC--------C
T ss_pred CCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccc--------c
Confidence 9999999999999999988999999999999999999 999999999999999999988776555544331 1
Q ss_pred hhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccc---cCccEEEEecCCcCccccccccC-CCC
Q 011364 321 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQND-DGR 396 (487)
Q Consensus 321 ~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fi~~~P~~~~pf~~~~~~-~~~ 396 (487)
..+..||+|+||.||++++++.|.+ ..||.++++++|++|.+.+. ..+|+||+|||.+++|||++.++ +++
T Consensus 274 -~~~~~pf~rity~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~ 348 (438)
T 3nem_A 274 -EEPKLPFPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPE 348 (438)
T ss_dssp -CCCCSSCCEEEHHHHHHHHHHTTCC----CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTT
T ss_pred -ccCCCCceEEEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCC
Confidence 1245689999999999999887754 46899999999998876441 13899999999999999887665 457
Q ss_pred ceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 397 ~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
+++|||||++| +||+||++|++|+++|++++++.|++++.++|||+|++||+|||||||||||||+|++||.+|||||+
T Consensus 349 ~~~rfdL~~~G-~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi 427 (438)
T 3nem_A 349 ICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVI 427 (438)
T ss_dssp BBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGS
T ss_pred ceEEEEEEECC-EEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcc
Confidence 89999999999 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 011364 477 PFPRTPGSVE 486 (487)
Q Consensus 477 ~FPr~~~~~~ 486 (487)
+|||+++||.
T Consensus 428 ~FPr~~~rl~ 437 (438)
T 3nem_A 428 LFPRDRRRLT 437 (438)
T ss_dssp SSCCCSSCCC
T ss_pred cCCCCccCCC
Confidence 9999999984
No 2
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=9.1e-104 Score=825.64 Aligned_cols=425 Identities=30% Similarity=0.534 Sum_probs=365.4
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIW 87 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~ 87 (487)
.++.|+|+. ++.|+.|+|+|||+++|++| +++|++|||++|. ||||++.+. .....+.. |+.||+|.
T Consensus 18 ~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~ 86 (456)
T 3m4p_A 18 IVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLE 86 (456)
T ss_dssp CCEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEE
T ss_pred eEEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEE
Confidence 457788883 37899999999999999996 6999999999974 999999743 22223456 99999999
Q ss_pred EEeeEeecCCCC--------ceEEEEEeEEEEEccCCCCCCC-CccccChhhhhhcccccCCChhhHHHHHHHHHHHHHH
Q 011364 88 IQGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPI-QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (487)
Q Consensus 88 V~G~~~~~~~~~--------~~~el~~~~i~vls~~~~~~p~-~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (487)
|+|+|++++.+. +++||++++++||++|..++|- ..+.++.++++++||||+|++.++++|++||+|++++
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~i 166 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHH
Confidence 999999886532 6899999999999999743221 1234678888899999999999999999999999999
Q ss_pred HHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHH
Q 011364 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238 (487)
Q Consensus 159 R~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~l 238 (487)
|+||.++||+||+||+|+++++||+++.|.+ +||+.++||+||||||||+
T Consensus 167 R~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------~~~~~~~~L~~SpqL~lq~ 216 (456)
T 3m4p_A 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216 (456)
T ss_dssp HHHHHHTTCEECCCCSEEC------CCCCEE------------------------------EETTEEEEECSCCHHHHHT
T ss_pred HHHHHhCCCEEEeCCeeecCCCCCccccccc------------------------------cccCCCcccccCHHHHHHH
Confidence 9999999999999999999999999998864 6899999999999999987
Q ss_pred HhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhh
Q 011364 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (487)
Q Consensus 239 l~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (487)
+++|++||||||||||||+++++||||||||||||++|+|++|+|+++|+||+++++.+.+.+...+.....
T Consensus 217 l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~-------- 288 (456)
T 3m4p_A 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNP-------- 288 (456)
T ss_dssp THHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCc--------
Confidence 667899999999999999998999999999999999999999999999999999999988665332211110
Q ss_pred hhhhhhcCCCcccCHHHHHHHHHHhccccc-cccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCC
Q 011364 319 RLSTVAERDFVQLSYTDAIELLIKAKKKFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGR 396 (487)
Q Consensus 319 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~-~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~ 396 (487)
.+ .....||+|+||.||++++++.|++.+ ....||.+++.++|+++.+.+ . +|+||+|||.+++|||++.++ |+.
T Consensus 289 ~~-~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~~dp~ 365 (456)
T 3m4p_A 289 HL-KLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVPGHPD 365 (456)
T ss_dssp TC-CCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEETTEEE
T ss_pred cc-ccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCCCCCC
Confidence 00 123568999999999999998886533 235799999999999998765 4 899999999999999987665 456
Q ss_pred ceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 397 ~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
+++|||||++|+|||+||++|++|+++|.+++++.|++++.++|||++++||+|||||||||||||+|++||.+|||||+
T Consensus 366 ~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi 445 (456)
T 3m4p_A 366 LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVC 445 (456)
T ss_dssp EECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGS
T ss_pred eeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 011364 477 PFPRTPGSVE 486 (487)
Q Consensus 477 ~FPr~~~~~~ 486 (487)
+|||++++|.
T Consensus 446 ~FPr~~~r~~ 455 (456)
T 3m4p_A 446 LYPRYLERCE 455 (456)
T ss_dssp SSCBBTTBCC
T ss_pred ccCCCCCCCC
Confidence 9999999985
No 3
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=1.2e-101 Score=808.18 Aligned_cols=422 Identities=29% Similarity=0.559 Sum_probs=364.9
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEEEEe
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G 90 (487)
+|+|+.+ +.|+.|+|+|||+++|++| +++|++|||++|. ||||++.+. ..|+.. . |+.||+|.|+|
T Consensus 2 ~i~~~~~-------~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLVK-------HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYG 69 (435)
T ss_dssp CGGGGGG-------GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEE
T ss_pred chhhhhh-------cCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEE
Confidence 4666642 6789999999999999995 7999999999974 999998542 234443 5 99999999999
Q ss_pred eEeecC---CCCceEEEEEeEEEEEccCCCC--CCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcC
Q 011364 91 NVVPSQ---GSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (487)
Q Consensus 91 ~~~~~~---~~~~~~el~~~~i~vls~~~~~--~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (487)
+|++++ ++++++||++++++||+++.+. +|++++.++.+.++++||||+|++.++++|++||+|++++|+||.++
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~ 149 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNA 149 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999977 4457899999999999986432 57777778888888999999999999999999999999999999999
Q ss_pred CeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCc
Q 011364 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (487)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~k 245 (487)
||+||+||+|++++++|+++.|.+ +||++++||+||||||||++++|++|
T Consensus 150 gFlEVeTPiL~~s~~eG~~~~F~~------------------------------~~~g~~~~L~~SpqLylq~l~~g~~r 199 (435)
T 2xgt_A 150 GYVEVAPPTLVQTQVEGGSTLFNL------------------------------DYFGEQSFLTQSSQLYLETCIPTLGD 199 (435)
T ss_dssp TCEECCCCSEESCCSSCTTSCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHCS
T ss_pred CCEEEECCeEeeccCCCchhceee------------------------------ccCCcccccCCChHHHHHHhhhccCc
Confidence 999999999999999999998865 57899999999999999876678999
Q ss_pred eEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccc--cccccccccchhhhhhhhh
Q 011364 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED--MDFFNTWIEKGIIDRLSTV 323 (487)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~l~~~ 323 (487)
|||||||||||+++++||+|||||||||++|+|++|+|+++|+||+++++.+.+.+..+ +..... .+ ..
T Consensus 200 vfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~--------~~-~~ 270 (435)
T 2xgt_A 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINP--------KF-QP 270 (435)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHST--------TC-CC
T ss_pred eEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhccc--------cc-cc
Confidence 99999999999998899999999999999999999999999999999999987654211 110000 00 01
Q ss_pred hcCCCcccCHHHHHHHHHHhccccc--cccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEE
Q 011364 324 AERDFVQLSYTDAIELLIKAKKKFE--FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAA 400 (487)
Q Consensus 324 ~~~~~~~it~~ea~~~l~~~~~~~~--~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~ 400 (487)
...||+|+||.||++++++.+...+ ....||.++...+|++|.+.+ . +|+||+|||.+++|||++.++ |+.+++|
T Consensus 271 ~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p~~~~~ 348 (435)
T 2xgt_A 271 PERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDNTLTES 348 (435)
T ss_dssp CCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCTTBBSE
T ss_pred cCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCcCeEEE
Confidence 2358999999999999988765432 235789999999999987765 3 799999999999999988765 4568899
Q ss_pred EEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCC
Q 011364 401 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480 (487)
Q Consensus 401 fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr 480 (487)
||||++|+|||+|||+|+||+++|++++++.|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+|||
T Consensus 349 fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr 428 (435)
T 2xgt_A 349 VDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPR 428 (435)
T ss_dssp EEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCC
T ss_pred EEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccC
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 011364 481 TPGSVEF 487 (487)
Q Consensus 481 ~~~~~~~ 487 (487)
++++|..
T Consensus 429 ~~~~~~p 435 (435)
T 2xgt_A 429 FVGRCVP 435 (435)
T ss_dssp BTTBCCC
T ss_pred CcCCCCC
Confidence 9999863
No 4
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-101 Score=802.44 Aligned_cols=423 Identities=30% Similarity=0.475 Sum_probs=381.9
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
++++|++|.+. +.|+.|+|+|||+++|++||++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 57889999764 68999999999999999999999999999974 99999876555777777 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccc---cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCC
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~g 166 (487)
|+|.+++++++++||++++++|||+|..++|++.+. ++.+.++++||||+|++.+++++++||++++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988889999999999999997678987765 78888889999999999999999999999999999999999
Q ss_pred eEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCce
Q 011364 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246 (487)
Q Consensus 167 F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kv 246 (487)
|+||+||+|+++++||++++|.+ +|+++++||+||||+|+|++++|++||
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rv 202 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVERV 202 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEE------------------------------EETTEEEEECSCCHHHHHHHHHHHSEE
T ss_pred CEEEECCEEEeeCCCCCceeEEE------------------------------ecCCceEEecCCcHHHHHHHHhCcCce
Confidence 99999999999999999999975 467889999999999997788899999
Q ss_pred EEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcC
Q 011364 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326 (487)
Q Consensus 247 feI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 326 (487)
||||||||+|++++.||+|||||||||++|.|++|+|+++|+|++++++.+.+++..++.+.+... . .++.
T Consensus 203 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~--------~-~l~~ 273 (429)
T 1wyd_A 203 FEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEP--------P-EVKI 273 (429)
T ss_dssp EEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCC--------C-CCCS
T ss_pred EEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhccccc--------c-cCCC
Confidence 999999999999888999999999999999999999999999999999999887766665543211 0 1246
Q ss_pred CCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEe
Q 011364 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLV 405 (487)
Q Consensus 327 ~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~ 405 (487)
||+|+||.||++++++.|.+ ..||.++++..|++|.+.+.. +|+||+|||.+++|||++.++ ++.++++||||+
T Consensus 274 pf~rity~eA~~~~~~~g~~----~~~~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~ 348 (429)
T 1wyd_A 274 PIKRLKYTEAIEILRSKGYN----IKFGDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESFDLIY 348 (429)
T ss_dssp SCEEEEHHHHHHHHHHSSCC----CCTTSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEE
T ss_pred CccEEEHHHHHHHHHhcCCC----cccCcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEE
Confidence 89999999999999877643 468889999999998776543 699999999999999887665 456899999999
Q ss_pred cCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 406 PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 406 ~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
+|+ ||+|||+|+||+++|+++++++|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+||+++++|
T Consensus 349 ~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~ 427 (429)
T 1wyd_A 349 KFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRL 427 (429)
T ss_dssp TTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBC
T ss_pred CCE-EEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCC
Confidence 998 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011364 486 EF 487 (487)
Q Consensus 486 ~~ 487 (487)
.+
T Consensus 428 ~p 429 (429)
T 1wyd_A 428 TP 429 (429)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 5
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=3.7e-100 Score=806.64 Aligned_cols=426 Identities=26% Similarity=0.393 Sum_probs=352.4
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc----cchHhHhccCCCCCcE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~----~~~~~~~~~~L~~gd~ 85 (487)
..+.|++|.. ++.|+.|+|+|||+++|.+||++|++|||++| +||||++.+. ..++.++. |+.||+
T Consensus 49 ~~~~i~~l~~------~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELVP------AMAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAESI 118 (548)
T ss_dssp CBCCGGGCSG------GGTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTEE
T ss_pred ceEEhhhcch------hcCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCCE
Confidence 4567888875 37899999999999999999999999999996 6999998632 12344667 999999
Q ss_pred EEEEeeEeecCC-----CCceEEEEEeEEEEEccCCCCCCCCccc-----------------------------------
Q 011364 86 IWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR----------------------------------- 125 (487)
Q Consensus 86 V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~~~~p~~~~~----------------------------------- 125 (487)
|.|+|+|++++. ..+++||++++|+|||+|..++|++.++
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLT 198 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccc
Confidence 999999999864 2578999999999999998778887321
Q ss_pred -----------------------cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCC
Q 011364 126 -----------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (487)
Q Consensus 126 -----------------------~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg 182 (487)
.+.+...++||||||++.++++|++||++++++|+||.++||+||+||+|++++|||
T Consensus 199 ~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~eg 278 (548)
T 3i7f_A 199 KRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEG 278 (548)
T ss_dssp --------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC------
T ss_pred cccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCC
Confidence 234445589999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhH-HHHhccCCceEEEecccccCCCCCC
Q 011364 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTS 261 (487)
Q Consensus 183 ~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~ 261 (487)
++++|.+ +||+.++||+||||||| +++++|++||||||||||||+++|+
T Consensus 279 ga~~F~v------------------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~ 328 (548)
T 3i7f_A 279 GSNIFEV------------------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTR 328 (548)
T ss_dssp -------------------------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSS
T ss_pred CcceeEE------------------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCC
Confidence 9999975 57789999999999998 5889999999999999999999899
Q ss_pred cccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHH
Q 011364 262 RHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 340 (487)
Q Consensus 262 rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l 340 (487)
||||||||||||++|. +++++|+++|+||+++++.+.+.+..++..+...... ..+ .-.||+++||.||++++
T Consensus 329 RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~---~~~---~~~pf~rit~~eai~~l 402 (548)
T 3i7f_A 329 RHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPF---EDL---IYRPFLRLTYKEAIEML 402 (548)
T ss_dssp SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCC---CCC---CCCSCEEEEHHHHHHHH
T ss_pred CcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCc---ccc---ccCCcceeEHHHHHHHH
Confidence 9999999999999998 7999999999999999999987776555443221110 001 11689999999999999
Q ss_pred HHhccccccccccccccchHHHhhhhh---ccccCccEEEEecCCcCccccccccC-CCCceEEEEEEecCeeeeechhH
Q 011364 341 IKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQ 416 (487)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~El~~G~~ 416 (487)
++.|.+ ..|+.|++.++|++|.+ ..+...++||+|||.+++|||++.++ |+.+++|||||++| +||+||++
T Consensus 403 ~~~g~~----~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~ 477 (548)
T 3i7f_A 403 RASGET----IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQ 477 (548)
T ss_dssp HHTTCC----CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEE
T ss_pred HHcCCC----CCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCee
Confidence 988765 35788999999987754 23332356778999999999977654 66789999999999 59999999
Q ss_pred hhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 417 r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|++|+++|++++++.|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+|++|.
T Consensus 478 rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 478 RIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp ECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred ecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 6
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=1.1e-99 Score=792.42 Aligned_cols=425 Identities=36% Similarity=0.611 Sum_probs=384.2
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V 86 (487)
++++|++|... +.|+.|+|+|||+++|++||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999764 68999999999999999999999999999974 999997532 34666777 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCC--CccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhc
Q 011364 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (487)
Q Consensus 87 ~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~--~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (487)
.|+|+|.+++++++++||++++++|||+| .++|+ +.+.++.+.++++||||+|++.+++++++||++++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999 66898 6667888999999999999999999999999999999999999
Q ss_pred CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCC
Q 011364 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244 (487)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~ 244 (487)
+||+||+||+|+++++++++++|.+ +|++.++||+||||+|+|++++|++
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~ 201 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLE 201 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHS
T ss_pred CCCEEEeCcEEEeecCCCCceeEEE------------------------------eecCCcEEeccChHHHHHHHhcCcc
Confidence 9999999999999999999999975 4678899999999999987888999
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhh
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 324 (487)
|||+||||||+|++++.||+|||||||+|++|.|++|+|+++|+|++++++.+.+++..++++.+...+ .++ .+
T Consensus 202 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~-----~~~-~~ 275 (434)
T 1x54_A 202 KVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLT-----TLK-NT 275 (434)
T ss_dssp EEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCH-----HHH-TC
T ss_pred ceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccc-----ccc-cc
Confidence 999999999999998889999999999999999999999999999999999998887777776654221 122 23
Q ss_pred cCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEE
Q 011364 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDM 403 (487)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl 403 (487)
+.||+|+||.||++++++.|.+ ..||.++++++|++|.+.+. +|+||+|||.+++|||++.++ ++.++++|||
T Consensus 276 ~~pf~rity~ea~~~~~~~g~~----~~~~~dl~~~~e~~l~~~~~--~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl 349 (434)
T 1x54_A 276 EPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEEFD--RPFFVYGYPKHIKAFYMKEDPNDPRKVLASDM 349 (434)
T ss_dssp CSSCCEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHTTCS--SCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEE
T ss_pred CCCCcEEEHHHHHHHHHhcCCC----cccCCccChHHHHHHHHHhC--CcEEEEcCChhhCcccCCcCCCCCCeEEEEEE
Confidence 6699999999999999887643 46888999999999887653 799999999999999876654 4568999999
Q ss_pred Eec-CeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 404 LVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 404 ~~~-G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
|++ |+|||+|||+|+||++.|+++++++|++++.++|||+|++||+|||||||||+|||+|++||.+|||||++||+++
T Consensus 350 ~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~ 429 (434)
T 1x54_A 350 LAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTP 429 (434)
T ss_dssp EETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBT
T ss_pred EECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcC
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011364 483 GSVEF 487 (487)
Q Consensus 483 ~~~~~ 487 (487)
++|.+
T Consensus 430 ~~~~p 434 (434)
T 1x54_A 430 ARLYP 434 (434)
T ss_dssp TBCCC
T ss_pred CCCCC
Confidence 99864
No 7
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=9.4e-100 Score=789.69 Aligned_cols=412 Identities=26% Similarity=0.423 Sum_probs=317.2
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC-CCcEEEEE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~-~gd~V~V~ 89 (487)
+++|++|. . +.|+.|+|+|||+++|++||++|++|||++|. ||||+++ +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788886 3 67899999999999999999999999999974 9999985 24 99 99999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccc----cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcC
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~----~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (487)
|+|.+++++++++||++++++|||+|..++|++.+. ++.+.++++||||+|++.+++++++||++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988889999999999999997678987765 6788888999999999999999999999999999999999
Q ss_pred CeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCc
Q 011364 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (487)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~k 245 (487)
||+||+||+|++++++|++++|.+ +|++.++||++|||+|+|++++|++|
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~------------------------------~~~g~~~~L~~Spel~~~~l~~g~~r 192 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFER 192 (422)
T ss_dssp TCEECCCC----------------------------------------------------------CHHHHHHHHHHHSE
T ss_pred CCEEEECCEEEEeCCCCCceeEEE------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCc
Confidence 999999999999999999999865 46788899999999999866688999
Q ss_pred eEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhh
Q 011364 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (487)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 324 (487)
|||||||||+|++++.||+|||||||||++|+ |++|+|+++|+|++++++.+.+.+..++++.+...+ ..
T Consensus 193 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~---------~~ 263 (422)
T 1n9w_A 193 VYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SF 263 (422)
T ss_dssp EEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC---------CC
T ss_pred eeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc---------cc
Confidence 99999999999998889999999999999999 999999999999999999998877666655443110 11
Q ss_pred cCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccc---cCccEEEEecCCcCccccccccCCCCceEEE
Q 011364 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 401 (487)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~f 401 (487)
..||+|+||.||++.+++.+ ...||.++.+++|++|.+.+. ..+|+||+|||.+++|||++.+++ .++++|
T Consensus 264 ~~pf~rity~eA~~~~~~~~-----~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~f 337 (422)
T 1n9w_A 264 PQDIPRLTHAEAKRILKEEL-----GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSF 337 (422)
T ss_dssp SSSCCEEEHHHHHHHHHHTS-----CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEE
T ss_pred CCCcceeEHHHHHHHHHhcC-----CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEE
Confidence 15899999999999998766 246888999988888765432 226999999999999999988777 789999
Q ss_pred EEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCC
Q 011364 402 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481 (487)
Q Consensus 402 dl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~ 481 (487)
|||++|+ ||+|||+|+||+++|++++++.|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+||++
T Consensus 338 DL~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~ 416 (422)
T 1n9w_A 338 DLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRD 416 (422)
T ss_dssp EEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC--
T ss_pred EEEECCE-EEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCC
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011364 482 PGSVEF 487 (487)
Q Consensus 482 ~~~~~~ 487 (487)
+++|.+
T Consensus 417 ~~~~~p 422 (422)
T 1n9w_A 417 RHRLTP 422 (422)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 999863
No 8
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.4e-98 Score=796.42 Aligned_cols=440 Identities=17% Similarity=0.229 Sum_probs=360.9
Q ss_pred CCCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCcc----chH
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE----GYD 73 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~~----~~~ 73 (487)
.|+.++|.++++++++...|.+ ++...++.|+|+|||+++|.+| |++|++|||++| .||||++.+.. .|+
T Consensus 25 ~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 102 (521)
T 3bju_A 25 DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFI 102 (521)
T ss_dssp CSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHH
T ss_pred CCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHH
Confidence 4788999999999999876543 2344578899999999999999 999999999995 59999986532 355
Q ss_pred hH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCcc-ccChhhhhhcccccCC-ChhhHHHHHH
Q 011364 74 QV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARV 150 (487)
Q Consensus 74 ~~-~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~-~~~~~~~r~~r~l~~R-~~~~~~~~~~ 150 (487)
.+ +. |+.||+|.|+|+|.+++++ ++||+|++++||++|..++|.... ..+.+...++||||+| ++.++++|++
T Consensus 103 ~~~~~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~ 178 (521)
T 3bju_A 103 HINNK--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFII 178 (521)
T ss_dssp HHHHH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHH
T ss_pred HHHhc--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHH
Confidence 43 56 9999999999999999864 899999999999999855665432 2456666699999999 7899999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||+|++++|+||.++||+||+||+|+++++++++++|. +++ ++|+.++||+|
T Consensus 179 Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~-t~~---------------------------~~~~~~~yL~~ 230 (521)
T 3bju_A 179 RSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFI-TYH---------------------------NELDMNLYMRI 230 (521)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCE-EEE---------------------------TTTTEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCceeeccCCCcccccee-eec---------------------------ccCCcceEeeC
Confidence 99999999999999999999999999988777789995 433 46799999999
Q ss_pred chhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccccccc
Q 011364 231 SGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309 (487)
Q Consensus 231 Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~ 309 (487)
||||||| ++++|++||||||||||||++++ ||||||||||||++|+|++|+|+++|+||+++++.+.+.+. +.+.+
T Consensus 231 SpqL~lk~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~--~~~~~ 307 (521)
T 3bju_A 231 APELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYK--VTYHP 307 (521)
T ss_dssp CSHHHHHHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSE--EEECT
T ss_pred CHHHHHHHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCce--EEecc
Confidence 9999995 78999999999999999999964 99999999999999999999999999999999999987652 22211
Q ss_pred ccccchhhhhhhhhhcCCCcccCHHHHHHHHHH------------------------hccccccccccccccchHHHhhh
Q 011364 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK------------------------AKKKFEFLVKWGCDLQSEHERYL 365 (487)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~------------------------~~~~~~~~~~~~~~l~~~~e~~l 365 (487)
...+. ..+...+..||+|+||.||++.+.. .+..+....+||..++..+++++
T Consensus 308 ~~~d~---~~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~v 384 (521)
T 3bju_A 308 DGPEG---QAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFL 384 (521)
T ss_dssp TCTTS---CCEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHT
T ss_pred ccccc---ccceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 10000 0000012345555555555554432 12222223356666777788887
Q ss_pred hhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CCCccc--
Q 011364 366 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS-- 437 (487)
Q Consensus 366 ~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~~~~~-- 437 (487)
.+.+ . +|+||+|||.+++|||++.++++.+++|||||++|. ||+||++|++|+..|+++++++ |.+++.
T Consensus 385 e~~l-~-~P~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~ 461 (521)
T 3bju_A 385 EVTC-I-NPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFI 461 (521)
T ss_dssp GGGC-C-SCEEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCC
T ss_pred HHhc-C-CcEEEECCccccCcccccCCCCCCeeeeEEEEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcc
Confidence 7655 4 799999999999999988877888999999999995 9999999999999999988654 777654
Q ss_pred HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 438 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 438 ~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
++|||+|++||+|||||||||||||+|++||.+||||||+||+.+..
T Consensus 462 d~~yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 462 DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp CHHHHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred hHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 59999999999999999999999999999999999999999999864
No 9
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=1.1e-98 Score=794.70 Aligned_cols=430 Identities=20% Similarity=0.287 Sum_probs=356.5
Q ss_pred CCCCccccceeeccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQV 75 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~ 75 (487)
|+.++|.++++++++.+.+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+.+
T Consensus 56 ~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~ 133 (529)
T 4ex5_A 56 AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAF 133 (529)
T ss_dssp SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHH
T ss_pred CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHH
Confidence 68899999999999998764210 11278999999999999999999999999996 5999998753 236667
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHHH
Q 011364 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVR 151 (487)
Q Consensus 76 ~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~R 151 (487)
+. |+.||+|.|+|+|.+++++ ++||++++++|||+|. .|+|.+.++ .+...++||||+| ++.++++|++|
T Consensus 134 ~~--l~~gd~V~V~G~v~~t~~g--elel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~R 207 (529)
T 4ex5_A 134 KK--WDLGDIVAARGVLFRTNKG--ELSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRAR 207 (529)
T ss_dssp HT--CCTTCEEEEEEEEEECTTS--CEEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHH
T ss_pred hc--CCCCCEEEEEEEEEEcCCC--cEEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 77 9999999999999998865 8999999999999997 566666554 3555689999997 78999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
|+|+++||+||.++||+||+||+|+++++++++++|. |++ ++|+.++||+||
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~S 259 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFV-THH---------------------------NALDMEMFLRIA 259 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCE-EEE---------------------------TTTTEEEEECSC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccc-ccc---------------------------ccCCcceecccC
Confidence 9999999999999999999999999887666678995 443 367899999999
Q ss_pred hhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccc
Q 011364 232 GQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310 (487)
Q Consensus 232 pql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~ 310 (487)
||||| +|+++|++||||||||||||++ +.||||||||||||++|+|++|+|+++|+||+++++.+.+.+ ++.+.+.
T Consensus 260 pqLylk~L~v~G~~rVyeIg~~FR~E~~-~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~ 336 (529)
T 4ex5_A 260 PELYLKRLIVGGFERVFEINRNFRNEGV-SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTA--TIQYQGR 336 (529)
T ss_dssp SHHHHHHHHHTTCSEEEEEEEEECCSCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCS--EEEETTE
T ss_pred HHHHHHHHHhcCCCcEEEeehheecCCC-CCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcC--ceecCce
Confidence 99998 5889999999999999999999 479999999999999999999999999999999999998765 3433322
Q ss_pred cccchhhhhhhhhhcCCCcccCHHHHHHHHHH-------------------hcccccccc--cccc-ccchHHHhhhhhc
Q 011364 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-------------------AKKKFEFLV--KWGC-DLQSEHERYLTEE 368 (487)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-------------------~~~~~~~~~--~~~~-~l~~~~e~~l~e~ 368 (487)
.. .+..||+|+||.||++.+.. .|.+++... .|+. ++..+++..++++
T Consensus 337 ~i----------d~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~ 406 (529)
T 4ex5_A 337 EL----------DLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEA 406 (529)
T ss_dssp EE----------ETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGG
T ss_pred ee----------ccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhcc
Confidence 11 14568899999999876543 122222100 3442 3444455555666
Q ss_pred cccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH------cCCCcccH--HH
Q 011364 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--WW 440 (487)
Q Consensus 369 ~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~------~g~~~~~~--~~ 440 (487)
.+. +|+||+|||.+++|||++.++++.+++|||||++|+ ||+||++|++|+++|++++++ .|.++..+ +|
T Consensus 407 ~l~-~P~FI~dyP~~~splak~~~~~p~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~ 484 (529)
T 4ex5_A 407 QLW-EPTFIIDYPIEVSPLARESDTVAGITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDAD 484 (529)
T ss_dssp GCC-SCEEEEEEEGGGCTTBCBCSSSTTEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHH
T ss_pred ccC-CCEEEECCchhhCCCcccCCCCCCceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHH
Confidence 666 799999999999999987777788999999999996 999999999999999888754 24333332 89
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 441 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 441 yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
||+|++||+|||||||||||||+|++||.+|||||++||+...
T Consensus 485 yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 485 YIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp HHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCC
T ss_pred HHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCC
Confidence 9999999999999999999999999999999999999999753
No 10
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=3.4e-97 Score=783.94 Aligned_cols=431 Identities=19% Similarity=0.297 Sum_probs=353.2
Q ss_pred CCCCCccccceeeccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchH-
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD- 73 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~- 73 (487)
.|+.++|.+++++++|...+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+
T Consensus 33 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 110 (504)
T 1e1o_A 33 VAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYND 110 (504)
T ss_dssp CSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHH
T ss_pred CCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEECCcCCHHHHHH
Confidence 478899999999999998754200 01278999999999999999999999999996 5999998753 2366
Q ss_pred hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHH
Q 011364 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVAR 149 (487)
Q Consensus 74 ~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~ 149 (487)
.++. |+.||+|.|+|+|.+++++ ++||++++++||++|.. |+|.+.++ .+...++||||+| ++.++++|+
T Consensus 111 ~~~~--l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~--plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r 184 (504)
T 1e1o_A 111 QFKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALR--PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFV 184 (504)
T ss_dssp TGGG--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCC-------TTHHHHTHHHHHHHCHHHHHHHH
T ss_pred HHhc--CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCC--CCCccccCCcChhhhhhccchhhhcCHHHHHHHH
Confidence 5677 9999999999999999875 89999999999999974 45555544 4555699999996 899999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (487)
+||+|++++|+||.++||+||+||+|+++++++++++|.+ ++ ++++.++||+
T Consensus 185 ~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t-~~---------------------------~~~~~~~yL~ 236 (504)
T 1e1o_A 185 VRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFIT-HH---------------------------NALDLDMYLR 236 (504)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEE-EE---------------------------TTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEe-cc---------------------------CCCCceEEec
Confidence 9999999999999999999999999998877666789964 32 4678999999
Q ss_pred cchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccc
Q 011364 230 VSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 308 (487)
Q Consensus 230 ~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~ 308 (487)
|||||||| |+++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+. +.+.
T Consensus 237 ~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~--i~~~ 313 (504)
T 1e1o_A 237 IAPELYLKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK--VTYG 313 (504)
T ss_dssp SCSHHHHHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSE--EEET
T ss_pred cCHHHHHHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCce--eeeC
Confidence 99999996 6889999999999999999995 699999999999999999999999999999999999988763 4443
Q ss_pred cccccchhhhhhhhhhcCCCcccCHHHHHHHHHH-hc------------------cccccccccccccchHHHhhhhhcc
Q 011364 309 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-AK------------------KKFEFLVKWGCDLQSEHERYLTEEA 369 (487)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-~~------------------~~~~~~~~~~~~l~~~~e~~l~e~~ 369 (487)
+... -+..||+|+||.||++.+.. .+ .+++....+|..++..++. ++++.
T Consensus 314 ~~~i----------~~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~-~ve~~ 382 (504)
T 1e1o_A 314 EHVF----------DFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDE-VAEAH 382 (504)
T ss_dssp TEEE----------ETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHH-HTGGG
T ss_pred CEee----------ccCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHH-Hhhcc
Confidence 2210 13458889999999887754 21 1111001112222333444 44555
Q ss_pred ccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc-----CCCcccH---HHH
Q 011364 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWY 441 (487)
Q Consensus 370 ~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~-----g~~~~~~---~~y 441 (487)
+. +|+||+|||.+++||+++.++|+.++++||||++|+ ||+||++|+||++.|+++++.. ..+++.+ +||
T Consensus 383 ~~-~p~fV~dyP~~~~pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~y 460 (504)
T 1e1o_A 383 LI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDY 460 (504)
T ss_dssp CC-SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHH
T ss_pred CC-CeEEEECCCcccCcCcCCCCCCCCceEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHH
Confidence 54 799999999999999988777888999999999998 9999999999999999998753 1233443 999
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 442 l~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
|+|++||+|||||||||||||+|++||.+||||||+||+.+..
T Consensus 461 l~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 461 VTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQ 503 (504)
T ss_dssp HHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC-
T ss_pred HHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 9999999999999999999999999999999999999998763
No 11
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=8.9e-97 Score=780.11 Aligned_cols=431 Identities=24% Similarity=0.404 Sum_probs=366.1
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCe-EEEEEEcCCCCeeeEEEEeCCc------cchHhHhccCCCC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLITT 82 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i-~Fi~lrD~~~~~~lQvv~~~~~------~~~~~~~~~~L~~ 82 (487)
++++|++|... ++.|++|+|+|||+++|++||+ +|++|||++| .||||++.+. ..++.++. |+.
T Consensus 22 ~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~~~~~--l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LNL 92 (487)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred ceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCc--cEEEEEeccccccccHHHHHHHhc--CCC
Confidence 44567777642 2678999999999999999997 9999999996 5999998651 12455667 999
Q ss_pred CcEEEEEeeEeecCC-----CCceEEEEEeEEEEEccCCCCCCCCccc---------------cChhhhhhcccccCCCh
Q 011364 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRTN 142 (487)
Q Consensus 83 gd~V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~~~~p~~~~~---------------~~~~~~r~~r~l~~R~~ 142 (487)
||+|.|+|+|.+++. .++++||++++++|||+|..++|++.++ .+.+...++||||+|++
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~ 172 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSH
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCH
Confidence 999999999999974 3478999999999999998778886431 45666779999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
.+++++++||+|++++|+||.++||+||+||+|+++++++++++|.+ +|+
T Consensus 173 ~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~------------------------------~~~ 222 (487)
T 1eov_A 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYF 222 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE------------------------------EET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee------------------------------ccC
Confidence 99999999999999999999999999999999999999999999976 356
Q ss_pred CcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhcc
Q 011364 223 EKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDN 300 (487)
Q Consensus 223 ~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~~ 300 (487)
++++||+||||+|+| ++++|++||||||||||||++++.||+|||||||||++|. +++|+|+++|+||+++++.+.+.
T Consensus 223 ~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~ 302 (487)
T 1eov_A 223 KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKR 302 (487)
T ss_dssp TEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999996 6789999999999999999998899999999999999997 69999999999999999999876
Q ss_pred CccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhh---ccccCccEEE
Q 011364 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIV 377 (487)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~fi 377 (487)
+..++..+....... .+......||++++|.||++++++.|.+ ..|+.++....++.|.+ ..+...|+||
T Consensus 303 ~~~~l~~~~~~~~~~---~~~~~~~~~~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v 375 (487)
T 1eov_A 303 FAHEIELVRKQYPVE---EFKLPKDGKMVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDTDFYIL 375 (487)
T ss_dssp CHHHHHHHHHHSCCC---CCCCCTTCCCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred chhHHHhhhhhcCCc---ceecccCCCeeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCCCCEEE
Confidence 654443222111000 0110112378999999999999887754 35667888888887753 2233257899
Q ss_pred EecCCcCccccc-cccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcc--cHHHHHHHHhcCCCCccc
Q 011364 378 SDYPKEIKAFYM-RQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAG 454 (487)
Q Consensus 378 ~~~P~~~~pf~~-~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~--~~~~yl~~~~~G~pP~~G 454 (487)
+|||.+++|||+ +.++|+.++++||||++|+ ||+|||+|+||++.|+++++..|++++ .++|||+|++||+|||||
T Consensus 376 ~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG 454 (487)
T 1eov_A 376 DKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAG 454 (487)
T ss_dssp ECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEE
T ss_pred ECCccccChhhcCcCCCCCCeEEEEEEEeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeE
Confidence 999999999965 4455667899999999995 999999999999999999999999988 789999999999999999
Q ss_pred eeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011364 455 FGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487 (487)
Q Consensus 455 ~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~~ 487 (487)
||||+|||+|++||.+||||||+|||+|++|..
T Consensus 455 ~glGiDRLvmll~g~~~IRdVi~FPr~~~r~~p 487 (487)
T 1eov_A 455 GGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 487 (487)
T ss_dssp EEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCCC
T ss_pred EEEhHHHHHHHHcCCCcHHheeecCCCCCCCCC
Confidence 999999999999999999999999999999963
No 12
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=9.3e-97 Score=779.51 Aligned_cols=440 Identities=20% Similarity=0.300 Sum_probs=354.5
Q ss_pred CCCCCccccceeeccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHh
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ 74 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~ 74 (487)
.|+.++|.++++++++...+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+.
T Consensus 25 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 102 (493)
T 3a74_A 25 DPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYEL 102 (493)
T ss_dssp CTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHH
T ss_pred CCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHH
Confidence 478899999999999998754210 01278999999999999999999999999996 5999998653 23666
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHH
Q 011364 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARV 150 (487)
Q Consensus 75 ~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~ 150 (487)
++. |+.||+|.|+|+|.+++++ ++||++++++||++|.. |+|.+.++ .+...++||||+| ++.++++|++
T Consensus 103 ~~~--l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~--plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~ 176 (493)
T 3a74_A 103 FKI--SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALR--PLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFIT 176 (493)
T ss_dssp HHH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHH
T ss_pred Hhc--CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccC--CCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHH
Confidence 777 9999999999999999875 89999999999999974 55555554 5555699999996 8899999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||+|++++|+||.++||+||+||+|+++++++++++|.+ ++ ++++.++||+|
T Consensus 177 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~-~~---------------------------~~~~~~~yLr~ 228 (493)
T 3a74_A 177 RSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFIT-HH---------------------------NALDMTLYMRI 228 (493)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EE---------------------------TTTTEEEEECS
T ss_pred HHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEe-cc---------------------------cCCCceeEEec
Confidence 999999999999999999999999998877777889964 22 46789999999
Q ss_pred chhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccccccc
Q 011364 231 SGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309 (487)
Q Consensus 231 Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~ 309 (487)
||||||| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++. +.+.+
T Consensus 229 SpqLylk~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~ 305 (493)
T 3a74_A 229 AIELHLKRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK--IQYGE 305 (493)
T ss_dssp CSHHHHHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE--EEETT
T ss_pred CHHHHHHHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce--EeeCC
Confidence 9999995 6889999999999999999995 699999999999999999999999999999999999988763 33322
Q ss_pred -------ccccchhhhhhhhhhcCCC-cccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecC
Q 011364 310 -------TWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 381 (487)
Q Consensus 310 -------~~~~~~~~~~l~~~~~~~~-~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P 381 (487)
+|.+.++.++++.+.+.++ ..++.+++.+++++.|.+++....||..++..++.++ ++.+. +|+||+|||
T Consensus 306 ~~i~~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v-e~~~~-~p~fv~dyP 383 (493)
T 3a74_A 306 HLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKV-EDKLI-QPTFIYGHP 383 (493)
T ss_dssp EEEECCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHT-GGGCC-SCEEEECCB
T ss_pred EeeccCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHh-hcccC-CcEEEECCC
Confidence 2333333333333333333 2333333333334444332222234445555556554 44444 799999999
Q ss_pred CcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc-----CCCcccH---HHHHHHHhcCCCCcc
Q 011364 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHA 453 (487)
Q Consensus 382 ~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~-----g~~~~~~---~~yl~~~~~G~pP~~ 453 (487)
.+++|||++.++|+.++++||||++|+ ||+||++|+||++.|+++++.. ..+++.+ +|||+|++||+||||
T Consensus 384 ~~~~pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhg 462 (493)
T 3a74_A 384 VEISPLAKKNPDDPRFTDRFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTG 462 (493)
T ss_dssp GGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEE
T ss_pred cccCCccCcCCCCCCeEEEEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCce
Confidence 999999988877888999999999998 9999999999999999998753 1233443 899999999999999
Q ss_pred ceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 454 GFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 454 G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|||||||||+|++||.+||||||+||+.+.
T Consensus 463 G~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 463 GLGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred eEEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 999999999999999999999999999864
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=7.3e-95 Score=777.73 Aligned_cols=413 Identities=22% Similarity=0.368 Sum_probs=335.2
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
++|+++++... +.|+.|+|+|||+++|++|+++|++|||++| .||||++.+...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREG--LVQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTE--EEEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 78899999874 6899999999999999999999999999997 499999865435666777 9999999999
Q ss_pred eeEeecCC-----CCceEEEEEeEEEEEccCCC-CCCCCc------cccChhhhh-hcccccCCChhhHHHHHHHHHHHH
Q 011364 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------KRVSREFLR-TKAHLRPRTNTFGAVARVRNALAY 156 (487)
Q Consensus 90 G~~~~~~~-----~~~~~el~~~~i~vls~~~~-~~p~~~------~~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~ 156 (487)
|+|.++++ +++++||+|++++|||+|.+ ++|+.+ +....+.+| ++||||+|++.++++|++||+|++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999852 35689999999999999973 255544 223334455 999999999999999999999999
Q ss_pred HHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhH
Q 011364 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNA 236 (487)
Q Consensus 157 ~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l 236 (487)
++|+||.++||+||+||+|+++++||+++ |.+ +++. .+.+|| +|+|||||||
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v-~~~~----------------------~~~~~y----~L~qSPQl~k 204 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLV-PYRH----------------------EPGLFY----ALPQSPQLFK 204 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEE-ECTT----------------------STTEEE----ECCSCSHHHH
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccc-cccc----------------------cCCcee----ECccCHHHHH
Confidence 99999999999999999999999998876 754 2221 001233 5999999999
Q ss_pred H-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccch
Q 011364 237 E-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 315 (487)
Q Consensus 237 ~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (487)
| ||++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||+++++.+.+..
T Consensus 205 q~Lmv~G~~rvfqI~~~FR~E~~~~~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~-------------- 269 (580)
T 1l0w_A 205 QMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVE-------------- 269 (580)
T ss_dssp HHHHHTTCSEEEEEEEEECCCCCCSSCC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC--------------
T ss_pred HHHHHhccCCeEEEeceeeCCCCCCCcC-CCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCCc--------------
Confidence 7 68999999999999999999965555 6999999999999999999999999999999986421
Q ss_pred hhhhhhhhhcCCCcccCHHHHHHHH-------------------------------------------------------
Q 011364 316 IIDRLSTVAERDFVQLSYTDAIELL------------------------------------------------------- 340 (487)
Q Consensus 316 ~~~~l~~~~~~~~~~it~~ea~~~l------------------------------------------------------- 340 (487)
+..||+|+||.||++.+
T Consensus 270 --------~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~ 341 (580)
T 1l0w_A 270 --------LPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVA 341 (580)
T ss_dssp --------CCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHH
T ss_pred --------cCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHH
Confidence 12356666666666554
Q ss_pred HHhccccccccccccc-cchHHHhh----------------------------------------------hhhccccCc
Q 011364 341 IKAKKKFEFLVKWGCD-LQSEHERY----------------------------------------------LTEEAFGGC 373 (487)
Q Consensus 341 ~~~~~~~~~~~~~~~~-l~~~~e~~----------------------------------------------l~e~~~~~~ 373 (487)
++.|.+--....|+.+ +.+.++++ |++. . .+
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~-~~ 419 (580)
T 1l0w_A 342 KRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-G-FR 419 (580)
T ss_dssp HHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-S-CC
T ss_pred HHcCCCcceEEEecCccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-c-cC
Confidence 1111100000122322 22222221 2222 2 27
Q ss_pred cEEEEecCCc------------CccccccccC-------CC-Cc-eEEEEEEecCeeeeechhHhhchHHHHHHHHHHcC
Q 011364 374 PVIVSDYPKE------------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432 (487)
Q Consensus 374 p~fi~~~P~~------------~~pf~~~~~~-------~~-~~-~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g 432 (487)
|+||+|||.. ++||||+.++ |+ .+ +++|||++||+ ||+|||+|+||++.|+++++.+|
T Consensus 420 p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g 498 (580)
T 1l0w_A 420 FLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLG 498 (580)
T ss_dssp EEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHT
T ss_pred eEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcC
Confidence 9999999996 8999998765 34 25 79999999998 99999999999999999999999
Q ss_pred CCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 433 LNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 433 ~~~~~----~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
++++. ++|||+|++||+|||||||||+|||+|++||.+||||||+||++++.+.
T Consensus 499 ~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 499 IGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp CCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred CChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 98776 7899999999999999999999999999999999999999999998875
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=7.6e-94 Score=772.18 Aligned_cols=435 Identities=21% Similarity=0.315 Sum_probs=342.4
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~V 88 (487)
+++++++|... +.|+.|+|+|||+++|++|+++|++|||++| .||||++.+. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREG--IVQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTE--EEEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 57889999874 6799999999999999999999999999997 4999998653 23566677 999999999
Q ss_pred EeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCcc-ccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHH
Q 011364 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (487)
Q Consensus 89 ~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~-~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (487)
+|+|.+++. +++++||++++++|||+|. .+|++.. ..+.+...++||||+|++.++++|++||+|++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999865 3578999999999999997 3454433 344444449999999999999999999999999999
Q ss_pred hhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-HH
Q 011364 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TY 239 (487)
Q Consensus 161 ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll 239 (487)
||.++||+||+||+|+++++||+++ |.+ +++. .+.+|| ||+|||||||| ||
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v-~~~~----------------------~~~~~y----~L~qSPQl~kq~Lm 202 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLV-PSRV----------------------HKGKFY----ALPQSPQLFKQLLM 202 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEE-ECSS----------------------STTCEE----ECCSCSHHHHHHHH
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-cee-cccc----------------------cCCceE----eCccCHHHHHHHHH
Confidence 9999999999999999999998876 754 2221 002333 69999999997 68
Q ss_pred hccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcc---------ccccccc
Q 011364 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE---------DMDFFNT 310 (487)
Q Consensus 240 ~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~---------~l~~~~~ 310 (487)
++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||+++++.+.+.+.. .+..++.
T Consensus 203 v~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~ 281 (585)
T 1c0a_A 203 MSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGS 281 (585)
T ss_dssp HTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSC
T ss_pred hcCCCceEEEeceeecCCCCCCcC-cccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcC
Confidence 999999999999999999965555 699999999999999999999999999999998764321 1111110
Q ss_pred cc-----c------------chh---hhhhhh----h--h----cCCCcccCHHHHHHHHHHhcccccccccccc-----
Q 011364 311 WI-----E------------KGI---IDRLST----V--A----ERDFVQLSYTDAIELLIKAKKKFEFLVKWGC----- 355 (487)
Q Consensus 311 ~~-----~------------~~~---~~~l~~----~--~----~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~----- 355 (487)
.. . .++ .+.+++ . + +.+|++.+++++.+++++.|.+--..+.|+.
T Consensus 282 dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 361 (585)
T 1c0a_A 282 DKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGL 361 (585)
T ss_dssp SSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGG
T ss_pred CCccccCCceeEEehhhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEeccccccc
Confidence 00 0 000 000000 0 0 1135677788888888876532000122332
Q ss_pred -ccchHHHhh-----------------------------------------------hhhccccCccEEEEecCCc----
Q 011364 356 -DLQSEHERY-----------------------------------------------LTEEAFGGCPVIVSDYPKE---- 383 (487)
Q Consensus 356 -~l~~~~e~~-----------------------------------------------l~e~~~~~~p~fi~~~P~~---- 383 (487)
++.+.++++ ++++... +|+||+|||..
T Consensus 362 ~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~-~p~fV~dfP~~~~~~ 440 (585)
T 1c0a_A 362 EGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKW-APLWVIDFPMFEDDG 440 (585)
T ss_dssp GGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCC-CEEEEECCBSEEECS
T ss_pred ccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCccccccc-ccEEEEeCCcccccc
Confidence 122211111 2222122 79999999997
Q ss_pred -------CccccccccC-------CCC-c-eEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCccc----HHHHHH
Q 011364 384 -------IKAFYMRQND-------DGR-T-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLD 443 (487)
Q Consensus 384 -------~~pf~~~~~~-------~~~-~-~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~----~~~yl~ 443 (487)
++||||+.++ |+. + +++|||++||+ ||+|||+|+||++.|+++++..|++++. ++|||+
T Consensus 441 ~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~ 519 (585)
T 1c0a_A 441 EGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLD 519 (585)
T ss_dssp SSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHH
Confidence 8999998765 353 5 79999999998 9999999999999999999999998876 789999
Q ss_pred HHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 444 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 444 ~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|++||+|||||||||+|||+|++||.+||||||+||++++.+.
T Consensus 520 al~yG~PPhgG~glGlDRLvmlltg~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 520 ALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp HTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSCB
T ss_pred HHhcCCCCceeEEEcHHHHHHHHcCCCcHHheecCCCCCCccc
Confidence 9999999999999999999999999999999999999998875
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-83 Score=688.93 Aligned_cols=438 Identities=22% Similarity=0.282 Sum_probs=326.4
Q ss_pred CCCCCCccc-cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhHh
Q 011364 1 MGSKVGEFR-KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK 76 (487)
Q Consensus 1 ~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~~ 76 (487)
|-|.+.+|. +++++.+|... +.|++|+|+|||+++|++ +|++|||++| .||||++++.. .|+.++
T Consensus 1 ~~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~ 69 (617)
T 4ah6_A 1 MIPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDG--LVQVIIPQDESAASVKKILC 69 (617)
T ss_dssp --CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSC--EEEEECCCSSSSHHHHHHHH
T ss_pred CCccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCc--CEEEEEeCCcCcHHHHHHHh
Confidence 345566664 88999999875 789999999999999975 5999999997 59999987642 356677
Q ss_pred ccCCCCCcEEEEEeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCccccC--hhhhh-hcccccCCChhhHH
Q 011364 77 SGLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--REFLR-TKAHLRPRTNTFGA 146 (487)
Q Consensus 77 ~~~L~~gd~V~V~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~~~~--~~~~r-~~r~l~~R~~~~~~ 146 (487)
. |+.||+|.|+|+|++++. .++++||++++++|||+|. ++|++.+.+. .+.+| ++||||+|++.+++
T Consensus 70 ~--l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~ 146 (617)
T 4ah6_A 70 E--APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQY 146 (617)
T ss_dssp H--CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHH
T ss_pred c--CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHH
Confidence 8 999999999999998643 2468999999999999998 7888755432 34445 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 011364 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (487)
+|++||++++++|+||. ++||+||+||+|++++++|+++ |.+. ++ .++..
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~-~~---------------------------~~g~~ 197 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVP-SR---------------------------EPGKF 197 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEE-CS---------------------------STTCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceec-cc---------------------------cCCcc
Confidence 99999999999999996 7999999999999988888765 7542 21 23566
Q ss_pred cccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhcc----
Q 011364 226 AFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN---- 300 (487)
Q Consensus 226 ~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~---- 300 (487)
+||+||||+||| |+++|++|||||+||||||+++ .+|+|||||||||++|+|++|+|+++|+||+++++.+...
T Consensus 198 ~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~-t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~~~~~p 276 (617)
T 4ah6_A 198 YSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSR-PDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVP 276 (617)
T ss_dssp EECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSC-SSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSCCCCSS
T ss_pred cccccCHHHHHHHHHhcccCcEEEEEhheecccCC-CCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 789999999996 6889999999999999999995 5669999999999999999999999999999998754221
Q ss_pred ---------------Cccccccccccccc---------hhh-hhhhh---------hhcC--CCcccCHHHHHHHHHH-h
Q 011364 301 ---------------CKEDMDFFNTWIEK---------GII-DRLST---------VAER--DFVQLSYTDAIELLIK-A 343 (487)
Q Consensus 301 ---------------~~~~l~~~~~~~~~---------~~~-~~l~~---------~~~~--~~~~it~~ea~~~l~~-~ 343 (487)
.+.|+.+--...+. .+. ..+.. +.+. .+.|-..++..+..+. .
T Consensus 277 f~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~ 356 (617)
T 4ah6_A 277 FPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHF 356 (617)
T ss_dssp CCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSS
T ss_pred ceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhc
Confidence 11222210000000 000 00000 0000 0122222332222222 1
Q ss_pred cccc------cc-----------------------ccccccc--------------cch---H-HHhh------hhhccc
Q 011364 344 KKKF------EF-----------------------LVKWGCD--------------LQS---E-HERY------LTEEAF 370 (487)
Q Consensus 344 ~~~~------~~-----------------------~~~~~~~--------------l~~---~-~e~~------l~e~~~ 370 (487)
|... .. ..+.|+. |.. . .+.. |.++-
T Consensus 357 g~ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~- 435 (617)
T 4ah6_A 357 NQEILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPT- 435 (617)
T ss_dssp CCCEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTT-
T ss_pred CCceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCC-
Confidence 1000 00 0000100 000 0 0111 12111
Q ss_pred cCccEEEEecCCc-------------CccccccccCC-------CC--ceEEEEEEecCeeeeechhHhhchHHHHHHHH
Q 011364 371 GGCPVIVSDYPKE-------------IKAFYMRQNDD-------GR--TVAAMDMLVPRIGELIGGSQREERLEYLEGRL 428 (487)
Q Consensus 371 ~~~p~fi~~~P~~-------------~~pf~~~~~~~-------~~--~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~ 428 (487)
...++||+|||.. ++||+++..+| +. .+.+|||++||+ ||+|||+|+|+++.|++++
T Consensus 436 ~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q~~~f 514 (617)
T 4ah6_A 436 LFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQRYIL 514 (617)
T ss_dssp SCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHHHHHH
T ss_pred CeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHHHHHH
Confidence 1268999999984 68999987543 22 467899999996 9999999999999999999
Q ss_pred H-HcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 429 D-ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 429 ~-~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
+ ..|++.+.++|||+|++||+|||||||+|+|||+|+++|.+||||||+||++...
T Consensus 515 ~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdvi~fP~~~~~ 571 (617)
T 4ah6_A 515 ATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRG 571 (617)
T ss_dssp HHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGSSSSCCCSSS
T ss_pred HHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheEEecCCCCCc
Confidence 8 7899888899999999999999999999999999999999999999999998754
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=5.7e-74 Score=581.04 Aligned_cols=303 Identities=18% Similarity=0.179 Sum_probs=237.2
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 138 ~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
+.|++ .+++|++||+|+++||+||.++||+||+||+|++++++ +.+++|.+....+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~---------------------- 83 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGP---------------------- 83 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCS----------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCc----------------------
Confidence 45555 88999999999999999999999999999999988876 4678997522111
Q ss_pred ccccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~ 295 (487)
..-.+.++||+|||||||| ++++|++||||||||||||++ +.||+|||||||||++|+|++|+|+++|+||+++++
T Consensus 84 --~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 84 --GHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD 160 (345)
T ss_dssp --TTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC
T ss_pred --ccccCCCEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc
Confidence 0011367899999999997 889999999999999999999 899999999999999999999999999999999986
Q ss_pred HhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccc-cccchHHHhhhh---hccc-
Q 011364 296 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLT---EEAF- 370 (487)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~-~~l~~~~e~~l~---e~~~- 370 (487)
. .+|.+.++.+.++++++.+.+.++++++.+++++.|.. ...|+ .++....++++. ++.+
T Consensus 161 ~------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~---~~~~~~~~~~~~~e~~l~~~ve~~lg 225 (345)
T 3a5y_A 161 C------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLS---NVADTEEDRDTLLQLLFTFGVEPNIG 225 (345)
T ss_dssp C------------CCCEEEEHHHHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTGGGSS
T ss_pred C------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCc---ccCCCcCCHhHHHHHHHHHHHHHHcC
Confidence 2 13334455566666666666667777777777666643 02344 456666666654 3333
Q ss_pred cCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc-------CCCcccH-HHHH
Q 011364 371 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY-WWYL 442 (487)
Q Consensus 371 ~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~-------g~~~~~~-~~yl 442 (487)
..+|+||+|||.+++||++..++++.++++||||+||+ ||+||++|++++++|+++++.. |+++..+ +|||
T Consensus 226 ~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl 304 (345)
T 3a5y_A 226 KEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLI 304 (345)
T ss_dssp SSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred CCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 23799999999999999876555666889999999998 9999999999999999998864 8888888 6899
Q ss_pred HHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 443 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 443 ~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
+|++||+|||||||||+|||+|++||.+||||||+|||+.
T Consensus 305 ~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 305 EALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 9999999999999999999999999999999999999974
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=6.7e-67 Score=520.57 Aligned_cols=279 Identities=27% Similarity=0.461 Sum_probs=244.7
Q ss_pred hcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeecc--------CCCCCCCCceeeecCCCcccccCCCC
Q 011364 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLIPSSREAAESPV 204 (487)
Q Consensus 133 ~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~--------~~eg~~~~F~vt~~~~~~~~~~~~~~ 204 (487)
+||++|+|++ +++++++|+++++.+|+||.++||+||+||+|+++ .+|+ +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4899999999 99999999999999999999999999999999999 7777 777764
Q ss_pred CCCCCCCCCCccccccccCcccccccchhhhHH-HHhccCCceEEEecccccCC--CCCCcccccccceeeEEccCCHHH
Q 011364 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKD 281 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~--~~t~rHl~EFtmlE~e~~~~~~~~ 281 (487)
+|+++++||++|||+|++ ++++|++|||+||||||+|+ +++.||+|||||||+|++|.|++|
T Consensus 64 ---------------~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~ 128 (294)
T 1nnh_A 64 ---------------EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMED 128 (294)
T ss_dssp ---------------EETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHH
T ss_pred ---------------EcCCCCEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHH
Confidence 366888999999999996 66778999999999999999 877899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHH
Q 011364 282 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361 (487)
Q Consensus 282 lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~ 361 (487)
+|+++|+|++++++.+.+....++ . .++. |+|++|.||++ + ||. .+
T Consensus 129 l~~~~e~l~~~l~~~~~~~~~~~i---------------~-~~~~-~~r~~y~ea~~---~----------~g~----~~ 174 (294)
T 1nnh_A 129 IMRLIERLVYGLFRKAEEWTGREF---------------P-KTKR-FEVFEYSEVLE---E----------FGS----DE 174 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCC---------------C-CCSS-CEEEEHHHHHH---H----------TSS----HH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---------------c-cCCC-ceEeEHHHHHH---H----------hCC----hH
Confidence 999999999999988753100001 0 1233 89999999995 2 222 22
Q ss_pred HhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEec-CeeeeechhHhhchHHHHHHHHHHcCCCcccHHH
Q 011364 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 440 (487)
Q Consensus 362 e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~-G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~ 440 (487)
++ ++.. . +|+||+||| +|||++. |+.++++||+|++ |++||+||++|+++++.|.++++..|++++.++|
T Consensus 175 er--~~~~-~-~P~~v~~~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~ 245 (294)
T 1nnh_A 175 KA--SQEM-E-EPFWIINIP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRP 245 (294)
T ss_dssp HH--HHHC-S-SCEEEECCC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH
T ss_pred hh--hhhc-C-CCEEEEcCC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHH
Confidence 33 2322 3 799999999 9999886 6779999999999 9889999999999999999999999999999999
Q ss_pred HHHHHhcCCC-CccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 441 YLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 441 yl~~~~~G~p-P~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
||+|++||+| ||||||||+|||+|+++|++|||||++||+++++|.
T Consensus 246 ~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 246 YLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPA 292 (294)
T ss_dssp HHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTSCC
T ss_pred HHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCccc
Confidence 9999999999 999999999999999999999999999999999863
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.90 E-value=4.5e-25 Score=219.29 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=117.4
Q ss_pred cCCCCceEEEEEeEEEEEccCCCCCCCCccccChhhhhhcccccCCChhhHHHHHH-----HHHHHHHHHHhhhcCCeEE
Q 011364 95 SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIW 169 (487)
Q Consensus 95 ~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~-----Rs~i~~~iR~ff~~~gF~E 169 (487)
.+++.+++||++++++||++|..++|++.++. ...+++||||+|++.++++++. ++++.+.+|++|.++||.|
T Consensus 20 ~~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 20 GASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp ----CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 34456789999999999999987788876543 2366899999999999999999 9999999999999999999
Q ss_pred EeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--cchhhhHHHH--h---cc
Q 011364 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT--VSGQLNAETY--A---TA 242 (487)
Q Consensus 170 V~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~Spql~l~ll--~---~g 242 (487)
|.||+|++..+.. . +.++..++ + ..+..+++...+|+ +||++++.+. . .+
T Consensus 98 V~Tp~l~~~~~~~--~-~~~~~~~p---------~-----------~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~ 154 (290)
T 3qtc_A 98 IKSPILIPLEYIE--R-MGIDNDTE---------L-----------SKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPD 154 (290)
T ss_dssp ECCCSEEETHHHH--H-TTCCTTSS---------G-----------GGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCS
T ss_pred EECCceeeHHHHH--h-cCCCcCCc---------h-----------hhhheeeCCCeeEcccChHHHHHHHHHhhccCCC
Confidence 9999999874311 0 10111110 0 00123456778899 9999996543 2 44
Q ss_pred CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 243 ~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
..|+||||+|||+|.. +.+|++||||+|+++++.+
T Consensus 155 p~rlfeiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~ 189 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSG 189 (290)
T ss_dssp SEEEEEEEEEECCCSC-SSSCCSEEEEEEEEEESTT
T ss_pred CeEEEEEcCEEecCCC-CCcCcchheEEEEEEEcCC
Confidence 5799999999999976 6889999999999998753
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.87 E-value=3.6e-21 Score=186.82 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 147 VARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
.++.....+..+++||. +.|+++|..|+++....+=. +.+.- ++. .++-+.
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~Gln-D~LnG--------------~Er---------pV~f~i 59 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQ-DNLSG--------------AEK---------AVQVKV 59 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCS-CCTTT--------------TCC---------CCEECC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCC-CCCCC--------------cee---------cceEec
Confidence 35667789999999999 99999999999998543211 10100 000 000111
Q ss_pred c---CcccccccchhhhHHHHh-c-cC---CceEEEecccccCCC-CCCcccccccceeeEEccCCHHHHHHHHHHHHHH
Q 011364 222 F---EKPAFLTVSGQLNAETYA-T-AL---SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 292 (487)
Q Consensus 222 ~---~~~~~L~~Spql~l~ll~-~-g~---~kvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (487)
+ +..+-..+|--.|||+.. . +| +.+|.-.++.|.|+. .+.+|.-+|+|.|||......+..|+..++.++.
T Consensus 60 ~~~~~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~ 139 (330)
T 12as_A 60 KALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEA 139 (330)
T ss_dssp SSSTTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHH
T ss_pred ccCCCceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHH
Confidence 1 556678899999998543 3 47 899999999997654 5799999999999999998888899999999888
Q ss_pred HHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccC
Q 011364 293 VVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGG 372 (487)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~ 372 (487)
+...+..... .+ .. .+ .+...+..++..+|.+|+.+.+ +..-..+.|..++..+
T Consensus 140 Iy~~ik~tE~-~~---~~----~y--~l~p~Lp~~i~fitsqeL~~~Y-------------P~lt~keRE~~i~ke~--- 193 (330)
T 12as_A 140 IWAGIKATEA-AV---SE----EF--GLAPFLPDQIHFVHSQELLSRY-------------PDLDAKGRERAIAKDL--- 193 (330)
T ss_dssp HHHHHHHHHH-HH---HH----HS--CCCCCSCSSCEEEEHHHHHHHS-------------SSSCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHH-HH---HH----Hh--ccCcCCCCceEEEeHHHHHHHc-------------CCCChHHHHHHHHHhh---
Confidence 8777653211 00 00 00 0112245567778888876542 1112234555566554
Q ss_pred ccEEEEecCCcCcc--ccccccC-CCCce---------EEEEEEe-c----CeeeeechhHhhchHHHHHHHHHHcCCCc
Q 011364 373 CPVIVSDYPKEIKA--FYMRQND-DGRTV---------AAMDMLV-P----RIGELIGGSQREERLEYLEGRLDELKLNR 435 (487)
Q Consensus 373 ~p~fi~~~P~~~~p--f~~~~~~-~~~~~---------~~fdl~~-~----G~~El~~G~~r~~~~~~~~~~~~~~g~~~ 435 (487)
++|||++.|..++- ++....+ .+.+. .+.|+++ + +..||.++++| -+++.+.++++..|...
T Consensus 194 gaVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~e 272 (330)
T 12as_A 194 GAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDED 272 (330)
T ss_dssp SEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTT
T ss_pred CCEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCCh
Confidence 69999999876532 2222222 22344 7899999 4 55799999999 79999999999999887
Q ss_pred ccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 436 DSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 436 ~~~~~yl~~~~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
...-+|..++..| +|++.|.|||.+||||+|++..+|-+|++=
T Consensus 273 r~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~s 316 (330)
T 12as_A 273 RLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQAG 316 (330)
T ss_dssp GGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSCC
T ss_pred hhccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheeecc
Confidence 7778899988888 599999999999999999999999999863
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.72 E-value=9.9e-18 Score=165.76 Aligned_cols=197 Identities=17% Similarity=0.229 Sum_probs=118.0
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc-
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV- 230 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~- 230 (487)
.++.+.+|++|...||.||.||.|++... |.... +.. .+ .. +. ..+..+...+|++
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l------~~~~g-~~~-~~-~m-----~~---------~~npl~e~~~LRp~ 130 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSA------LAKMT-IGE-DH-PL-----FS---------QVFWLDGKKCLRPM 130 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHH------HHTTS-SCC----CC-----TT---------TSCEEETTEEECSC
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHH------HhhcC-CCc-cc-cc-----EE---------eecccccchhhhhc
Confidence 67899999999999999999999997431 11000 000 00 00 00 0001123446663
Q ss_pred -chhhhH--HHHhccCC---ceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccc
Q 011364 231 -SGQLNA--ETYATALS---NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED 304 (487)
Q Consensus 231 -Spql~l--~ll~~g~~---kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~ 304 (487)
+|.+.. +.....-+ |+|+||+|||+|.. +..|.+||+|+|++....+
T Consensus 131 l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~-~~~r~~EF~qle~~i~g~~-------------------------- 183 (288)
T 3dsq_A 131 LAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQ-GAQHLNEFTMLNLTELGTP-------------------------- 183 (288)
T ss_dssp SHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCS-SSCCCSEEEEEEEEEETCC--------------------------
T ss_pred ChHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCC-CCCcCccEEEEEEEEEcCC--------------------------
Confidence 455542 32323233 89999999999987 6789999999999986531
Q ss_pred cccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcC
Q 011364 305 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384 (487)
Q Consensus 305 l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~ 384 (487)
..+++.++..++... + +.++-....+ +. |
T Consensus 184 ------------------------~~~~f~elkg~le~l---------------------l-~~LGl~~~~~-~~-~--- 212 (288)
T 3dsq_A 184 ------------------------LEERHQRLEDMARWV---------------------L-EAAGIREFEL-VT-E--- 212 (288)
T ss_dssp ------------------------GGGHHHHHHHHHHHH---------------------H-HHHTCCCCEE-EE-C---
T ss_pred ------------------------chhhHHHHHHHHHHH---------------------H-HHcCCCCcEE-ec-C---
Confidence 011223333222211 0 0000000000 00 0
Q ss_pred ccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcC-CCCccceeccHHHHH
Q 011364 385 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLV 463 (487)
Q Consensus 385 ~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G-~pP~~G~giGidRL~ 463 (487)
. ..-...++|++++|. ||++|+.+.+..+. ++| .|||+|||||+|||+
T Consensus 213 ------s--~e~~~~~~~l~~~~~-eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~ 261 (288)
T 3dsq_A 213 ------S--SVVYGDTVDVMKGDL-ELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLL 261 (288)
T ss_dssp ------C--CCSSCCCEEEEETTE-EEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHH
T ss_pred ------C--cceEEEEEEEEeCCE-EEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHH
Confidence 0 011245689999996 99999966543311 567 479999999999999
Q ss_pred HHHcCCCCcccccccCC
Q 011364 464 QFATGVENIRDAIPFPR 480 (487)
Q Consensus 464 m~l~g~~~Irdv~~FPr 480 (487)
|+++|.+|||++..-.-
T Consensus 262 m~~~g~~~iR~~~~~~~ 278 (288)
T 3dsq_A 262 MIREGTQHVQSMARSLS 278 (288)
T ss_dssp HHHHTCSCGGGGSSCSS
T ss_pred HHHcCCchhhcCCCCcc
Confidence 99999999999876443
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.66 E-value=3.2e-16 Score=158.33 Aligned_cols=131 Identities=10% Similarity=-0.003 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCC-ceeeecCCCcccccCCCCCC-CC----CCCCCCccccccccCcc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQ-FCVTTLIPSSREAAESPVDA-IP----KTKDGLIDWSQDFFEKP 225 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~-F~vt~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~ 225 (487)
+++.+.||++|..+||.||.+|.+.+..- ..... + ..+|+++..++... +.+ .+ ..|... .+ ..-
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~-nfd~L~~-p~~hpar~~~dt~~-l~nP~s~~~~~~~~~~----~~--~~v 174 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFF-NFDALNI-PEHHPARDMWDTFW-LTGEGFRLEGPLGEEV----EG--RLL 174 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHH-HTTTTTC-CSSSTTTTSSCCCB-EECSSCCCBCTTSCBC----CS--CEE
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchh-HHHhhCC-CCCCccccccccEE-EcCccccccccccccc----cc--cce
Confidence 55889999999999999999999976310 00000 1 11111111000000 000 00 000000 00 011
Q ss_pred cccccchhhhHHHHhccC--CceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHHH
Q 011364 226 AFLTVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (487)
Q Consensus 226 ~~L~~Spql~l~ll~~g~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~ 293 (487)
+..++||.+. +++..+- -|+|+||+|||+|+. +.+|+|||+|||+++++. |+.+++..++.+++.+
T Consensus 175 LRt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 175 LRTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp ECSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred eeccchHHHH-HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 2344555553 6665543 379999999999886 578999999999999986 6788877777766654
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.57 E-value=1.8e-14 Score=142.89 Aligned_cols=122 Identities=9% Similarity=0.035 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
.+++.+.||++|..+||.||++|.+.+... +....+..++++ +.+. .+.-|......|++
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~-nf~~l~~~~~~p------ar~~-------------~d~~~l~e~~vLRt 114 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYY-NFEALNLPKSHP------ARDM-------------QDSFYITDEILMRT 114 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHH-HTGGGTCCTTCG------GGCT-------------TTSCBSSSSEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehh-hHHhhCCCCCcc------cccc-------------CCcEEEcCcceeec
Confidence 456889999999999999999999876310 000110011111 0000 00011123345766
Q ss_pred chhhhH-HHHhcc----CCceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHH
Q 011364 231 SGQLNA-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 293 (487)
Q Consensus 231 Spql~l-~ll~~g----~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~ 293 (487)
|.--.+ ++++.+ -.|+||||+|||+++. +.+|+|||+|||+++++ .|+.+++..+|.+++.+
T Consensus 115 sl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 115 HTSPVQARTMEKRNGQGPVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp SSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCCCccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 666665 787776 5699999999999875 57899999999999998 57888888887777655
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.51 E-value=3e-14 Score=142.29 Aligned_cols=198 Identities=20% Similarity=0.307 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc-
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV- 230 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~- 230 (487)
+.+.+.||++|...||.|+.+|.+.+..- .| +..+.+.+|++.. ..+.-|.+....|++
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~-----nF--d~Ln~p~dhpaR~-------------~~dt~~i~e~~vLRTh 169 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYH-----NF--DALNIPGHHPARA-------------DHDTFWFDTTRLLRTQ 169 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCC-----CC--CTTTCCSSSHHHH-------------HTTCCBSSSSCEECSC
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHH-----HH--HhhCCCCCChhhc-------------ccccEEeCCCceeccc
Confidence 44788999999999999999998865321 01 2222222221110 000112232333444
Q ss_pred -chhhhHHHHhccCC--ceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHHHHHhhccCcccc
Q 011364 231 -SGQLNAETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVVRYILDNCKEDM 305 (487)
Q Consensus 231 -Spql~l~ll~~g~~--kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~~~~~~~~~~~~l 305 (487)
||.+ ++.+..+-. |+|++|+|||++ . +.+|+|+|+|+|+.... .++.++...++.+++.++.. ++
T Consensus 170 tsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg~-------~~ 239 (327)
T 3pco_A 170 TSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEE-------DL 239 (327)
T ss_dssp THHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHCS-------CS
T ss_pred CCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhCC-------Cc
Confidence 4444 366665544 899999999998 4 78999999999987653 35666666666665554310 00
Q ss_pred ccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCc
Q 011364 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (487)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~ 385 (487)
+ +. +.+.+ -
T Consensus 240 ----------------------------------------~----vr------------~rps~---------------f 248 (327)
T 3pco_A 240 ----------------------------------------Q----IR------------FRPSY---------------F 248 (327)
T ss_dssp ----------------------------------------E----EE------------EEEEC---------------C
T ss_pred ----------------------------------------e----EE------------EecCc---------------C
Confidence 0 00 01111 1
Q ss_pred cccccccCCCCceEEEEEEe-cC-eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHH
Q 011364 386 AFYMRQNDDGRTVAAMDMLV-PR-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLV 463 (487)
Q Consensus 386 pf~~~~~~~~~~~~~fdl~~-~G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~ 463 (487)
||+.| +...|+++ +| +-||+++++-. .+.+++.|++++.| +.-.||||+|||+
T Consensus 249 PfteP-------s~eadI~~~~G~w~EIgg~G~VH------P~Vl~~~gid~~~~------------~g~AFglgleRla 303 (327)
T 3pco_A 249 PFTEP-------SAEVDVMGKNGKWLEVLGCGMVH------PNVLRNVGIDPEVY------------SGFAFGMGMERLT 303 (327)
T ss_dssp TTEEE-------EEEEEEECSSSCEEEEEEEEEEC------HHHHHTTTCCTTTC------------EEEEEEEEHHHHH
T ss_pred CCCCC-------cEEEEEEEeCCCeEEEEEEEEEC------HHHHHHcCCCCccc------------eEEEEEechHHHH
Confidence 66654 56678888 55 22899988876 55666777765321 2347899999999
Q ss_pred HHHcCCCCcccc
Q 011364 464 QFATGVENIRDA 475 (487)
Q Consensus 464 m~l~g~~~Irdv 475 (487)
|+..|+++||+.
T Consensus 304 ml~~~i~diR~~ 315 (327)
T 3pco_A 304 MLRYGVTDLRSF 315 (327)
T ss_dssp HHHHTCSCGGGG
T ss_pred HHHcCCcHHHHH
Confidence 999999999964
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=136.57 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=42.6
Q ss_pred EEEEEEecC---eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccc
Q 011364 399 AAMDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 399 ~~fdl~~~G---~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv 475 (487)
...+++++| +-||+++++-. .+.++..|++.+ .|.-+||||+|||+|+..|++|||+.
T Consensus 417 ~ev~i~~~G~~~W~EIGg~G~vh------P~VL~~~Gipe~-------------~~v~AfgLgLeRLaml~~gi~diR~l 477 (508)
T 3l4g_A 417 MEVFSYHQGLKKWVEVGNSGVFR------PEMLLPMGLPEN-------------VSVIAWGLSLERPTMIKYGINNIREL 477 (508)
T ss_dssp EEEEECCSTTSSCEEEEEEECCC------HHHHGGGTCCTT-------------EEEEEEEEESHHHHTTTTTCSCGGGT
T ss_pred EEEEEEECCccceEEEEeeeeEc------HHHHHHCCCCCC-------------ceEEEEEecHHHHHHHHcCCcHHHHH
Confidence 344666677 23999988776 555556555211 14568899999999999999999986
Q ss_pred c
Q 011364 476 I 476 (487)
Q Consensus 476 ~ 476 (487)
.
T Consensus 478 ~ 478 (508)
T 3l4g_A 478 V 478 (508)
T ss_dssp S
T ss_pred h
Confidence 4
No 25
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=98.97 E-value=2.3e-09 Score=110.75 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcC--------CeEEEeC-CeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 152 NALAYATHKFFQEN--------GFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 152 s~i~~~iR~ff~~~--------gF~EV~T-P~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
+.+.+.||++|... ||.|+.+ |.+.+.. ..| +.++.+.+|++.+ ..+.=|.
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~-----~NF--d~L~~p~dHpaR~-------------~~Dtfyi 110 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTW-----QNF--DSLLIPADHPSRK-------------KGDNYYL 110 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHH-----HHT--GGGTCCTTCGGGC-------------GGGSCBS
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHH-----HHH--HHhCCCCCCCccc-------------ccceEEe
Confidence 34667777777776 9999998 6666421 012 2333322222211 0112233
Q ss_pred CcccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEcc
Q 011364 223 EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 223 ~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (487)
+...-|+++.--++ +++..+..|+|++|+|||++.. +..|.|+|.|+|--..|
T Consensus 111 ~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 111 NRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp SSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred cCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 55556776655554 6777777899999999999987 68999999999976654
No 26
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.61 E-value=5.1e-07 Score=95.15 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.9
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||+|...+..|.+||+|++..+.+. |+.++...++.++
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL 254 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALL 254 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987541467999999999998763 4555555444443
No 27
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.59 E-value=6e-07 Score=94.55 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=32.0
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAY 289 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~l 289 (487)
|+|++|+|||++...+.+|.+||+||+.-+.+. |+.++...+|.+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~l 265 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGL 265 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHH
Confidence 799999999987641256999999999988763 344444444333
No 28
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.47 E-value=9.3e-07 Score=93.87 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||++...+.+|.+||+||+.-++.. |+.++...+|.++
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (648)
T 2odr_B 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (648)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987531467999999999888763 4555544444443
No 29
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.47 E-value=9.9e-07 Score=93.75 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||++...+.+|.+||+||+.-++.. |+.++...+|.++
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (665)
T 2odr_A 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (665)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987531467999999999888763 4555544444443
No 30
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.46 E-value=1e-06 Score=93.78 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||++...+.+|.+||+||+.-++.. |+.++...+|.++
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL 273 (685)
T 2odr_D 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (685)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987531467999999999888763 4555544444443
No 31
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.44 E-value=1.2e-06 Score=93.58 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||++...+.+|.+||+||+.-++.. |+.++...+|.++
T Consensus 226 RLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL 273 (701)
T 2odr_C 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (701)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987531467999999999888763 4555544444443
No 32
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.21 E-value=1.6e-06 Score=89.38 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- .| ..+.|. .+.
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~-~d~------------------------ 81 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSS------------------------ 81 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE-EEE------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe-Eec------------------------
Confidence 346788899999999999999999999999998541 01 012222 110
Q ss_pred ccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCCCCc----ccccccceeeEEccCCHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm~ 284 (487)
-+..++|+...+... ++.+.. + -|+|+|++|||+|.. +++ -.-||+|.|+|. |.+..+...
T Consensus 82 -----~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~~~~~~~ 154 (401)
T 1evl_A 82 -----ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIRD 154 (401)
T ss_dssp -----TTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHHH
T ss_pred -----CCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCCHHHHHH
Confidence 034556666555444 444322 2 389999999999975 233 247999999995 666555554
Q ss_pred HHHHHHH
Q 011364 285 CATAYLQ 291 (487)
Q Consensus 285 ~~e~li~ 291 (487)
..++++.
T Consensus 155 e~~e~i~ 161 (401)
T 1evl_A 155 EVNGCIR 161 (401)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 33
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.17 E-value=3.8e-06 Score=88.13 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----C----CCCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----e----g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++.+|.+.+|+.|.+.||.||.||++.+..- + -..+.|.+++.+
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~---------------------- 120 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRH---------------------- 120 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTT----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCC----------------------
Confidence 4567888999999999999999999999999998531 1 112334332211
Q ss_pred cccccccCcccccccch-hhh--H-HHHhccC----CceEEEecccccCCCCCCc----ccccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSG-QLN--A-ETYATAL----SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Sp-ql~--l-~ll~~g~----~kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm 283 (487)
++.++|+... +.. . +..+... -|+|+|++|||+|.. .+ -..||+|.|+|.-..+..+.-
T Consensus 121 -------~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~--p~~Gl~R~REF~q~d~~~f~~~~~~ad 191 (458)
T 2i4l_A 121 -------KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR--PRFGVMRGREFLMKDAYSFDVDEAGAR 191 (458)
T ss_dssp -------CCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS--CBTGGGBCSEEEEEEEEEEESSHHHHH
T ss_pred -------CCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC--CCCCcccccceEEeEEEEEECCHHHHH
Confidence 3455565432 222 1 2222222 389999999999932 23 347999999999766766554
Q ss_pred HHHHHH
Q 011364 284 ACATAY 289 (487)
Q Consensus 284 ~~~e~l 289 (487)
.....+
T Consensus 192 ~e~~~~ 197 (458)
T 2i4l_A 192 KSYNKM 197 (458)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 34
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.16 E-value=8.6e-06 Score=82.20 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC----------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+.+..|.+.+|+.|...||.||.||++..... ....+.|.+.+..
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~---------------------- 91 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE---------------------- 91 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC----------------------
Confidence 45678889999999999999999999999988421 1112334332211
Q ss_pred cccccccCcccccccchhhh--H-HHHhcc----CCceEEEecccccCCCCCCcccccccceeeEEccCCH
Q 011364 216 DWSQDFFEKPAFLTVSGQLN--A-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 279 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~--l-~ll~~g----~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~ 279 (487)
++.+.|+ |++- . ++++.. --|.|+|++|||+|.. ..-+.-||+|+++|.-..+-
T Consensus 92 -------g~~l~LR--pd~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p-~~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 92 -------GQSITLR--YDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKR-HKGRSTENYQIGIELFGESA 152 (344)
T ss_dssp -------CCEEEEC--CCSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSCH
T ss_pred -------CCEEecC--CCCcHHHHHHHHhcCCCCCeEEEEECcEEccCCC-CCCCcceeEEEEEEEEcCCC
Confidence 2222232 2222 2 444332 2389999999999976 34477899999999976653
No 35
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.14 E-value=3.4e-06 Score=87.47 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
-.-.+++..|.+.+++.+.+.||.||.||+|.....- |.-..|. .+.
T Consensus 169 p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~------------------------------~em 218 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFE------------------------------EDL 218 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTG------------------------------GGS
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcCh------------------------------hhh
Confidence 4567788999999999999999999999999986420 1001110 011
Q ss_pred c---CcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCC--Cc----ccccccceeeEEccCCHHHHHH
Q 011364 222 F---EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SR----HLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 222 ~---~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t--~r----Hl~EFtmlE~e~~~~~~~~lm~ 284 (487)
| +.++||+...+... .+... .+ -|+|++++|||+|.... .+ -..||+|.|.+. |++-++..+
T Consensus 219 y~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~ 297 (425)
T 2dq3_A 219 YKCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYD 297 (425)
T ss_dssp CBCTTTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHH
T ss_pred eEecCCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHH
Confidence 1 34456665554433 32221 12 38999999999997420 11 235999999976 555555555
Q ss_pred HHHHHHHHH
Q 011364 285 CATAYLQYV 293 (487)
Q Consensus 285 ~~e~li~~~ 293 (487)
..++++..+
T Consensus 298 ~~~e~i~~~ 306 (425)
T 2dq3_A 298 ELEKLVKDA 306 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 36
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.11 E-value=2.4e-06 Score=88.47 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+++..|.+.+|+.|.+.||.||.||+|..... . +. .+.|.+++.+
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~---------------------- 71 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG---------------------- 71 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCC----------------------
Confidence 45778899999999999999999999999998532 1 11 1233332110
Q ss_pred cccccccCcccccccchhhhH-HHHhc-------cC-CceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-------AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDD 282 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~-------g~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~l 282 (487)
++.++|+.-..... ++++. .+ -|+|+|++|||+|.. ..-+.-||+|+|+|.-..+ . .++
T Consensus 72 -------g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~-~~gR~reF~q~~~e~~~~~~~~~d~e~ 143 (420)
T 1qe0_A 72 -------DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERK-QKGRYRQFNQFGVEAIGAENPSVDAEV 143 (420)
T ss_dssp -------HCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCCCHHHHHHH
T ss_pred -------CCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCC-cCCCcccEEEeeEEEECCCCchhHHHH
Confidence 23444443333322 33321 22 389999999999966 3445789999999987664 2 344
Q ss_pred HHHHHHHHH
Q 011364 283 MACATAYLQ 291 (487)
Q Consensus 283 m~~~e~li~ 291 (487)
+.++.++++
T Consensus 144 i~~~~~~l~ 152 (420)
T 1qe0_A 144 LAMVMHIYQ 152 (420)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 37
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.10 E-value=1.5e-05 Score=84.00 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C------CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
-.-.+++..|.+.+|+.|.+.||.||.||++.+..-- + ..+.|.+++...
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~--------------------- 99 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG--------------------- 99 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCC---------------------
Confidence 3567788999999999999999999999999986531 1 123343332110
Q ss_pred cccccccCcccccccchhh-----hHHHHhc--cC-CceEEEecccccCCC-CCCcccccccceeeEEccCCHHHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQL-----NAETYAT--AL-SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql-----~l~ll~~--g~-~kvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+=.+.+++|+.-.+- |.+.+.+ .+ -|+|||++|||+|.. ++---.-||+|.|++..+++..+....+
T Consensus 100 ----~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~ 175 (477)
T 1hc7_A 100 ----EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEV 175 (477)
T ss_dssp ----SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHH
T ss_pred ----ccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHH
Confidence 001244556655443 2322222 23 289999999999943 2201235999999999999887776666
Q ss_pred HHHH
Q 011364 287 TAYL 290 (487)
Q Consensus 287 e~li 290 (487)
..++
T Consensus 176 ~~~l 179 (477)
T 1hc7_A 176 RRML 179 (477)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 38
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.05 E-value=8e-06 Score=89.31 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++..|.+.+|+.|.+.||.||.||+|....- .| ..+.|.+++.
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~----------------------- 323 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQL----------------------- 323 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEE-----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEec-----------------------
Confidence 4567889999999999999999999999999998531 01 0122221110
Q ss_pred cccccccC-cccccccchhhhH-HHHhcc------C-CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHH
Q 011364 216 DWSQDFFE-KPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 216 ~~~~~~~~-~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (487)
-+ +.++|+.-..... ++.+.. + -|+|+||+|||+|.+ +.+| .-||||.|+|. |.+.+++
T Consensus 324 ------~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~-~~~~GL~R~ReF~Q~d~~~-f~~~~~~ 395 (645)
T 1nyr_A 324 ------DETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS-GAVSGLQRVRGMTLNDSHI-FVRPDQI 395 (645)
T ss_dssp ------TTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT-TTCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred ------CCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCC-ccccCcceeeeEEEccEEE-EcCHHHH
Confidence 03 4445555444443 444432 1 289999999999987 3433 37999999998 6665555
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
.+...+++..+
T Consensus 396 ~d~~~e~i~~~ 406 (645)
T 1nyr_A 396 KEEFKRVVNMI 406 (645)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444433
No 39
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.01 E-value=2e-05 Score=81.98 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--C--C---CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--e--g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.-.+++.+|.+.+|+-|...||.||.||++.+... . | ..+.|.+++.+
T Consensus 17 P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~------------------------ 72 (434)
T 1wu7_A 17 PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG------------------------ 72 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCC------------------------
Confidence 345778899999999999999999999999998532 0 1 12344443221
Q ss_pred cccccCcccccccchhhhH-HHHhcc----C-CceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYATA----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~g----~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
++.+.|+.-.-... ++.+.. + -|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 73 -----g~~l~LrPd~t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 73 -----GREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 133 (434)
T ss_dssp -----SCEEEECSCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred -----CCEEEeCCCChHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCC
Confidence 23333332222222 443322 2 3899999999999763 335689999999997665
No 40
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.00 E-value=1.8e-05 Score=85.27 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++.+|.+.+|+.|.+.||.||.||++.+..-- | ..+.|.+++..
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~---------------------- 100 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRN---------------------- 100 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTT----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCC----------------------
Confidence 44678889999999999999999999999999985310 1 11233332111
Q ss_pred cccccccCcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
++.++|+.-.+-.. ++... .+ -|+|+|++|||+|.. + +| .-||+|.|+|.-..+-.+..
T Consensus 101 -------~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~ 171 (572)
T 2j3l_A 101 -------DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLD 171 (572)
T ss_dssp -------CCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHH
T ss_pred -------CCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHH
Confidence 34455544443322 32222 12 289999999999976 3 33 36999999998766666665
Q ss_pred HHHHHH
Q 011364 284 ACATAY 289 (487)
Q Consensus 284 ~~~e~l 289 (487)
..++.+
T Consensus 172 ~e~~~~ 177 (572)
T 2j3l_A 172 QSYRDY 177 (572)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 41
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.00 E-value=9.6e-06 Score=84.97 Aligned_cols=126 Identities=17% Similarity=0.103 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHhh-hcCCeEEEeCCeeeccCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff-~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.-.-.+++..|.+.+|+.+ .+.||.||.||+|.+..- .|. .+.|.+++.+
T Consensus 60 lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~--------------------- 118 (460)
T 3uh0_A 60 LPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTD--------------------- 118 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC-----------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCC---------------------
Confidence 3456888899999999999 999999999999987532 011 1223221110
Q ss_pred ccccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCC---CCcccccccceeeEEccCCHHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm 283 (487)
--+.+++|+...+... ++.... + -|+|++++|||+|... +-.=.-||+|.|.+. |++-++..
T Consensus 119 ------~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~ 191 (460)
T 3uh0_A 119 ------EEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVK 191 (460)
T ss_dssp ----------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHH
T ss_pred ------CCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHH
Confidence 0024455655544444 443332 1 2799999999999762 211235999999996 67666666
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+.+++++..+..-+
T Consensus 192 ~e~~~~i~~~~~~~ 205 (460)
T 3uh0_A 192 SEIFNSLKLIDIVY 205 (460)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665554433
No 42
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.92 E-value=4e-05 Score=78.82 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+.+.+
T Consensus 21 P~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~------------------------- 75 (400)
T 3od1_A 21 PEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQ------------------------- 75 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCC-------------------------
Confidence 345678889999999999999999999999977542 0112234332211
Q ss_pred ccccCcccccccchhhh--H-HHHhcc-----C-CceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 219 QDFFEKPAFLTVSGQLN--A-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~--l-~ll~~g-----~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+-|+ |++- . ++++.. . -|.|+|++|||+|... .-+.-||+|+++|.-..+
T Consensus 76 ----g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 76 ----GNTLVLR--PDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp ----SCEEEEC--SCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCC
T ss_pred ----CCEEEEC--CCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCC
Confidence 2222222 2222 1 333332 2 3899999999999763 446689999999986654
No 43
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.91 E-value=2.4e-05 Score=80.97 Aligned_cols=103 Identities=19% Similarity=0.329 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+++.+|.+.+|+-|...||.||.||++.+... . |. .+.|.+++.+
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~---------------------- 72 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG---------------------- 72 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC----------------------
Confidence 35678889999999999999999999999998532 1 11 1344443211
Q ss_pred cccccccCcccccccchhhhH-HHHh-ccC------CceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TAL------SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~-~g~------~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
++.+.|+.-.-... ++.+ ... -|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 73 -------g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 73 -------GRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSE 135 (421)
T ss_pred -------CCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEECCC
Confidence 22222322111112 3333 212 3899999999999763 335689999999987654
No 44
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.90 E-value=2.8e-05 Score=80.50 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+++.+|.+.+|+-|...||.||.||++.+... . |. .+.|.+++.+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~---------------------- 73 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN---------------------- 73 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCC----------------------
Confidence 45778899999999999999999999999998532 0 11 1455543321
Q ss_pred cccccccCcccccccchhhhH-HHHh-cc-----CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~-~g-----~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
++.+.|+.-.-... ++.+ .. --|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 74 -------g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 74 -------GDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp -------SCEEEECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCC
T ss_pred -------CCEEEeCCCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECCC
Confidence 22222322111112 3333 21 13899999999999763 345689999999987655
No 45
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.89 E-value=4.3e-05 Score=80.07 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.-.-.+++..|.+.+|+.|.+.||.||.||++.+... .| ..+.|.+++...
T Consensus 34 lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~-------------------- 93 (459)
T 1nj8_A 34 LPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK-------------------- 93 (459)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS--------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCc--------------------
Confidence 3456778899999999999999999999999998531 11 123444432210
Q ss_pred ccccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCCCCc---cccccc-ceeeEEccCCHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR---HLAEFW-MIEPELAFADLKDD 282 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~t~r---Hl~EFt-mlE~e~~~~~~~~l 282 (487)
+--+.+++|+.-.+... ++.+.. + -|+|||++|||+|.. +.+ -.-||+ |.|.+..+++..+.
T Consensus 94 -----~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~-~~rGl~R~REF~qq~d~~~~~~~~~~a 167 (459)
T 1nj8_A 94 -----TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK-HTRPLIRLREIMTFKEAHTAHSTKEEA 167 (459)
T ss_dssp -----SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS-CCBTTTBCSBCSCEEEEEEEESSHHHH
T ss_pred -----ccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccC-CCCCceEeeeeeccCcEEEEECCHHHH
Confidence 00134556665555544 444322 2 289999999999975 111 225999 99999988988777
Q ss_pred HHHHHHHHHH
Q 011364 283 MACATAYLQY 292 (487)
Q Consensus 283 m~~~e~li~~ 292 (487)
....++++..
T Consensus 168 ~~e~~~~i~~ 177 (459)
T 1nj8_A 168 ENQVKEAISI 177 (459)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 46
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.86 E-value=3.5e-05 Score=81.59 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CC--------CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG--------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg--------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
-.-.+++..|.+.+|+.|.+ ||.||.||+|.+..- .+ ..+.|.+++...
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~--------------------- 125 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL--------------------- 125 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCC---------------------
Confidence 45677888999999999999 999999999998542 11 123454432110
Q ss_pred cccccccCcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCCCc--cccccc-ceeeEEccCCHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSR--HLAEFW-MIEPELAFADLKDDMA 284 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t~r--Hl~EFt-mlE~e~~~~~~~~lm~ 284 (487)
+--+.+++|+...+... ++.+. .+ -|+|++++|||+|..++.= =.-||+ |.|.+..+++.++..+
T Consensus 126 ----~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~ 201 (501)
T 1nj1_A 126 ----SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEE 201 (501)
T ss_dssp ----EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred ----cccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHH
Confidence 00023456665555544 43322 12 2899999999999752110 124999 9999998898887777
Q ss_pred HHHHHHHH
Q 011364 285 CATAYLQY 292 (487)
Q Consensus 285 ~~e~li~~ 292 (487)
.+++++..
T Consensus 202 e~~~~l~~ 209 (501)
T 1nj1_A 202 QVERAVEI 209 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 47
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.85 E-value=3.7e-05 Score=80.79 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
-.-.+++..|.+.+|+.|...||.||.||++..... . |. .+.|.+.+...
T Consensus 43 P~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~-------------------- 102 (467)
T 4e51_A 43 PQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALN-------------------- 102 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCC--------------------
Confidence 345778899999999999999999999999987532 0 11 13444322110
Q ss_pred ccccccccCcccccccchhhhH-HHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC--H--HHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--L--KDDM 283 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~--~~lm 283 (487)
++.+.|+.-.-... ++++.. --|.|++++|||+|... .-+.-||+|+++|.-..+ . .+++
T Consensus 103 --------g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~-~gR~ReF~Q~d~ei~g~~~~~adaEvi 173 (467)
T 4e51_A 103 --------GENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQ-RGRYRQFHQVGVEALGFAGPDADAEIV 173 (467)
T ss_dssp --------CCEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCCCSHHHHHHH
T ss_pred --------CCEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCC-CCCcCceEEEEEEEEeCCChHHHHHHH
Confidence 22233332222222 433321 23899999999999763 345689999999986543 2 2344
Q ss_pred HHHHHHHHH
Q 011364 284 ACATAYLQY 292 (487)
Q Consensus 284 ~~~e~li~~ 292 (487)
.++.++++.
T Consensus 174 ~l~~~~l~~ 182 (467)
T 4e51_A 174 MMCQRLWED 182 (467)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 48
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.83 E-value=4.2e-05 Score=80.32 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC-----CCCCCC-CceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-----CEGAGE-QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~-----~eg~~~-~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.-.+.|..+.+.+|+.|...||.||.||++.... ++...+ .|.+.+.++... ... + ..+
T Consensus 23 P~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~--------~~~----~--~~~ 88 (465)
T 3net_A 23 PSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNR--------QAE----K--DKS 88 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEeccccccc--------ccc----c--ccc
Confidence 34567788999999999999999999999995421 233344 676654410000 000 0 000
Q ss_pred ccccCcccccccchhhhH-HHHhcc-----C-CceEEEecccccCCCCCCcccccccceeeEEccCC--HH----HHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNA-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LK----DDMAC 285 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l-~ll~~g-----~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~----~lm~~ 285 (487)
.+.-++.+.|+.-.-... |+++.. . -|.|+|++|||.|.. ..-+.-||+|+++|.-..+ .. |++.+
T Consensus 89 ~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~-~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l 167 (465)
T 3net_A 89 GDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERA-KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAI 167 (465)
T ss_dssp -----CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHH
T ss_pred cCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCC-CCCCcceeEEeeEEEECCCCccchhhHHHHHH
Confidence 000022223322111111 333221 2 399999999999976 3446689999999987653 12 46666
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
+-++++.+
T Consensus 168 ~~~~l~~l 175 (465)
T 3net_A 168 ITEIFEAV 175 (465)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66666544
No 49
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.82 E-value=2.4e-05 Score=81.84 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...+++.++++.+++.+.++||.||.||.|..... ++.+ +.|.++..
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~------------------------ 260 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD------------------------ 260 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC------------------------
Confidence 457889999999999999999999999999998643 1222 23332110
Q ss_pred ccccccCcccccccchhhhHH-HHhcc------C-CceEEEecccccCCC-CC-----CcccccccceeeEEccCCHHH-
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATA------L-SNVYTFGPTFRAENS-NT-----SRHLAEFWMIEPELAFADLKD- 281 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g------~-~kvfeI~~~FR~E~~-~t-----~rHl~EFtmlE~e~~~~~~~~- 281 (487)
+.++||....+..+- +...- + =|+|++++|||+|.. .+ ---.-||+|.|.+. |+.-++
T Consensus 261 ------~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~ 333 (484)
T 3lss_A 261 ------GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQE 333 (484)
T ss_dssp ------SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTT
T ss_pred ------CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchH
Confidence 245567776666653 32221 1 279999999999963 11 11224999999975 655444
Q ss_pred -HHHHHHHHHHHH
Q 011364 282 -DMACATAYLQYV 293 (487)
Q Consensus 282 -lm~~~e~li~~~ 293 (487)
..+..++++...
T Consensus 334 ~s~~e~e~~~~~~ 346 (484)
T 3lss_A 334 ESWRHLEDMITTS 346 (484)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 666666665543
No 50
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.81 E-value=5.7e-05 Score=79.03 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC--CCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE--GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e--g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
.-.+++..|.+.+|+.|...||.||.||++.....- +.+ +.|.+.+.+
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~------------------------- 95 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKG------------------------- 95 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSS-------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCC-------------------------
Confidence 356788899999999999999999999999886431 111 234432211
Q ss_pred ccccCcccccccchhhh--H-HHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 219 QDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~--l-~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+-|+ |++- . ++++.. --|.|+|++|||+|... .-+.-||+|+++|.-..+
T Consensus 96 ----g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 96 ----GHRVALR--PEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp ----SCEEEEC--SCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred ----CCEEecC--CcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCC
Confidence 2222222 2322 1 433332 23799999999999763 446789999999986653
No 51
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.80 E-value=2.7e-05 Score=84.98 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++..|.+.+|+.+.+.||.||.||+|.+..-- | ..+.|. ++..
T Consensus 267 lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~---------------------- 323 (642)
T 1qf6_A 267 HNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSE---------------------- 323 (642)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEET----------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eecC----------------------
Confidence 45678899999999999999999999999999985420 1 012222 1100
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
++.++|+.-..... ++.... + -|+|+||+|||+|.+ +.+| .-||||.|++. |++.+++.
T Consensus 324 -------~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~~ 394 (642)
T 1qf6_A 324 -------NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIR 394 (642)
T ss_dssp -------TEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHH
T ss_pred -------CceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHHH
Confidence 23445554444333 443322 2 289999999999976 2332 36999999998 66655555
Q ss_pred HHHHHHHHHH
Q 011364 284 ACATAYLQYV 293 (487)
Q Consensus 284 ~~~e~li~~~ 293 (487)
+..++++..+
T Consensus 395 ~e~~~~i~~~ 404 (642)
T 1qf6_A 395 DEVNGCIRLV 404 (642)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 52
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.77 E-value=3.9e-05 Score=79.34 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc--
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-- 222 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 222 (487)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... |.-+-+-+ .+ ..+.|
T Consensus 163 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l------~~~sG~~~-----------~f----------~~emy~~ 215 (421)
T 1ses_A 163 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKA------FLGTGHFP-----------AY----------RDQVWAI 215 (421)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHH------HHHHTCTT-----------TT----------GGGSCBB
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHH------HHhcCCCC-----------cC----------chhcEEE
Confidence 357788899999999999999999999999998542 21110000 00 00111
Q ss_pred -CcccccccchhhhH-HHHhc------cC-CceEEEecccccCCC------CCCcccccccceeeEEccCC-HHHHHHHH
Q 011364 223 -EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD-LKDDMACA 286 (487)
Q Consensus 223 -~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~-~~~lm~~~ 286 (487)
+.+++|....+... .++.. .+ -|+|++++|||+|.+ ++---.-||+|.|++..... .++..+..
T Consensus 216 ~d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~ 295 (421)
T 1ses_A 216 AETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAF 295 (421)
T ss_dssp TTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHH
T ss_pred cCCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHH
Confidence 23456665555544 22221 12 289999999999952 12012359999999874444 47776666
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
++++...
T Consensus 296 ~e~~~~~ 302 (421)
T 1ses_A 296 QELLENA 302 (421)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 53
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.77 E-value=5.3e-05 Score=77.21 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-----C-CC-CCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-----E-GA-GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-----e-g~-~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
-.+++..|.+.+|+.|...||.||.||++..... + .. .+.|.+.+.+
T Consensus 36 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~-------------------------- 89 (373)
T 3rac_A 36 FAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGG-------------------------- 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCS--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCC--------------------------
Confidence 4677888999999999999999999999987432 0 11 2333332111
Q ss_pred cccCccccccc--chhhhHHHHhc------cCCceEEEecccccCCCC-----CCcccccccceeeEEccCC--H---HH
Q 011364 220 DFFEKPAFLTV--SGQLNAETYAT------ALSNVYTFGPTFRAENSN-----TSRHLAEFWMIEPELAFAD--L---KD 281 (487)
Q Consensus 220 ~~~~~~~~L~~--Spql~l~ll~~------g~~kvfeI~~~FR~E~~~-----t~rHl~EFtmlE~e~~~~~--~---~~ 281 (487)
++.+.|+. .|++. ++++. .--|.|+|++|||+|... ..-+.-||+|+++|.-..+ . -+
T Consensus 90 ---g~~l~LRpd~T~~~a-R~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaE 165 (373)
T 3rac_A 90 ---GDAVALRPEMTPSIA-RMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMD 165 (373)
T ss_dssp ---SSCEEECSSSHHHHH-HHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHH
T ss_pred ---CCEEEECCcCHHHHH-HHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHH
Confidence 22222221 12222 33222 235899999999999651 1235689999999986544 1 24
Q ss_pred HHHHHHHHHHH
Q 011364 282 DMACATAYLQY 292 (487)
Q Consensus 282 lm~~~e~li~~ 292 (487)
++.++.++++.
T Consensus 166 vi~l~~~~l~~ 176 (373)
T 3rac_A 166 VLRLLHEASAA 176 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555444443
No 54
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.72 E-value=4.1e-05 Score=79.97 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCC-------CCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~-------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...+++.++++.+++.+.+.||.||.||.|.+... ++. .+.|.++..
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~------------------------ 237 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG------------------------ 237 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC------------------------
Confidence 357788999999999999999999999999998643 111 133433210
Q ss_pred ccccccCcccccccchhhhH-HHHhc--------cCC-ceEEEecccccCCCC------CCcccccccceeeEEccCCHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYAT--------ALS-NVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLK 280 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~--------g~~-kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~ 280 (487)
+.+.||.-..+..+ -++.. .+. |+|++++|||+|... +---.-||+|.|.+. |+.-+
T Consensus 238 ------~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe 310 (485)
T 3qne_A 238 ------EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPE 310 (485)
T ss_dssp ------TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGG
T ss_pred ------CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHH
Confidence 23445655555544 23222 122 699999999999641 111234999999986 67667
Q ss_pred HHHHHHHHHHHHH
Q 011364 281 DDMACATAYLQYV 293 (487)
Q Consensus 281 ~lm~~~e~li~~~ 293 (487)
+..+..++++...
T Consensus 311 ~s~~e~e~ml~~~ 323 (485)
T 3qne_A 311 KSWEEFDRMIGCS 323 (485)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666544
No 55
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.72 E-value=4.6e-05 Score=80.12 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
.-.+++..|.+.+|+.|.+.||.||.||+|.+... .|. .+.|.+ +..
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~-d~~------------------------ 101 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF-DIE------------------------ 101 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE-EET------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE-ecC------------------------
Confidence 35778889999999999999999999999998542 111 123322 110
Q ss_pred cccccCcccccccchhhhH-HHH-----hc----cC-CceEEEecccccCCCCCC-c---ccccccceeeEEccCCHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETY-----AT----AL-SNVYTFGPTFRAENSNTS-R---HLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll-----~~----g~-~kvfeI~~~FR~E~~~t~-r---Hl~EFtmlE~e~~~~~~~~l 282 (487)
+++++|+.-.+... ++. .. .+ -|+|+|++|||+|.. +. + -.-||+|.|+|.- .+.++.
T Consensus 102 -----~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~-~~~~Gl~R~REF~Q~~~e~f-~~~~~~ 174 (471)
T 3a32_A 102 -----GHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPS-GSIYGLLRVRGFTQDDAHII-VPGGRV 174 (471)
T ss_dssp -----TEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEEE-EEGGGH
T ss_pred -----CcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCC-cccccceeEEEEEECCeEEE-cChHHH
Confidence 33444544433322 221 11 23 389999999999965 31 1 2359999999985 443333
Q ss_pred HHHHHHHH
Q 011364 283 MACATAYL 290 (487)
Q Consensus 283 m~~~e~li 290 (487)
.+...+++
T Consensus 175 ~de~~e~i 182 (471)
T 3a32_A 175 IDVVYDVF 182 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34333444
No 56
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.71 E-value=6.6e-05 Score=79.43 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC------CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- +. ..+.|.+++...
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~-------------------- 110 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGL-------------------- 110 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETT--------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCC--------------------
Confidence 4567788899999999999999999999999987542 11 123454433210
Q ss_pred ccccccccCcccccccchhhhH-HHHhc------cCC-ceEEEecccccCCC--CCCcccccccceeeEEccCCHHHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~------g~~-kvfeI~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~ 284 (487)
.+ .+.+++|+...+... .+... .+. |+||+++|||+|.. .+-.-.-||+|.|.+...++.++..+
T Consensus 111 ----~~-~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~ 185 (518)
T 3ial_A 111 ----QP-LEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVS 185 (518)
T ss_dssp ----EE-EEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHH
T ss_pred ----cc-cCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHH
Confidence 00 024456665555443 33322 122 79999999999943 12112359999999997789988888
Q ss_pred HHHHHHHHH
Q 011364 285 CATAYLQYV 293 (487)
Q Consensus 285 ~~e~li~~~ 293 (487)
.++.++...
T Consensus 186 e~~~~l~~~ 194 (518)
T 3ial_A 186 QLSDYWKVI 194 (518)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777443
No 57
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.71 E-value=0.00019 Score=75.50 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-C--C-----CC-CCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AG-EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-e--g-----~~-~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.-...+++.+|.+.+++.+.+.||.||.||.|..... + | .. +.|.++..
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~---------------------- 272 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS---------------------- 272 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT----------------------
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC----------------------
Confidence 4456888889999999999999999999999998542 1 1 11 23322100
Q ss_pred ccccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCC-----CCCcccccccceeeEEccCCH-H
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS-----NTSRHLAEFWMIEPELAFADL-K 280 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~-----~t~rHl~EFtmlE~e~~~~~~-~ 280 (487)
-+.++||....+... .+...- + =|+|++++|||+|.. .+--=.-||+|.|.+.--.+. +
T Consensus 273 -------~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e 345 (501)
T 1wle_A 273 -------RFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLE 345 (501)
T ss_dssp -------TSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHH
T ss_pred -------CCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHH
Confidence 023456776666655 333221 2 289999999999954 111122489999998744343 6
Q ss_pred HHHHHHHHHHHHH
Q 011364 281 DDMACATAYLQYV 293 (487)
Q Consensus 281 ~lm~~~e~li~~~ 293 (487)
+..+..++++...
T Consensus 346 ~s~~~~e~~l~~~ 358 (501)
T 1wle_A 346 QSSELLEEFLSLQ 358 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777777554
No 58
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.67 E-value=5e-05 Score=79.29 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC--CCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... ++.+ +-|. .+.
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~------------------------------~em 239 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE------------------------------DVI 239 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHH------------------------------HTC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCCh------------------------------Hhh
Confidence 356778899999999999999999999999998542 1111 1111 001
Q ss_pred c---CcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCC------CCcccccccceeeEEccCCHHHHHH
Q 011364 222 F---EKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 222 ~---~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~lm~ 284 (487)
| +.++||....+... .+.... + -|+|++++|||+|... +-.-.-||+|.|++ .|++-++..+
T Consensus 240 y~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~ 318 (455)
T 2dq0_A 240 YKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWE 318 (455)
T ss_dssp CBBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHH
T ss_pred CeecCCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHH
Confidence 1 23556766666554 333221 2 2899999999999751 10123499999998 4666677777
Q ss_pred HHHHHHHHH
Q 011364 285 CATAYLQYV 293 (487)
Q Consensus 285 ~~e~li~~~ 293 (487)
..++++...
T Consensus 319 ~~~e~l~~~ 327 (455)
T 2dq0_A 319 WHEKIIRNA 327 (455)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666544
No 59
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.63 E-value=0.00023 Score=74.44 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
+-.-.+++..|.+.+|+.|...||.||.||++.... ++...+.|.+.+.+
T Consensus 24 lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~------------------------ 79 (464)
T 4g84_A 24 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG------------------------ 79 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCS------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCC------------------------
Confidence 345678889999999999999999999999997642 11112234332211
Q ss_pred cccccCcccccccchhhh---HHHHhcc---CCceEEEecccccCCCCC-CcccccccceeeEEccC-C--H--HHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA-D--L--KDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~---l~ll~~g---~~kvfeI~~~FR~E~~~t-~rHl~EFtmlE~e~~~~-~--~--~~lm~~ 285 (487)
|+.+.|+ |++= .|+++.. --|.|+|+++||.|.... .-+.-||+|+++|.-.. + . -++|.+
T Consensus 80 -----g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l 152 (464)
T 4g84_A 80 -----GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKI 152 (464)
T ss_dssp -----SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHH
T ss_pred -----CCEEEeC--CcCcHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHH
Confidence 2333332 2321 1433322 137899999999996421 23557999999998653 2 2 245555
Q ss_pred HHHHHHH
Q 011364 286 ATAYLQY 292 (487)
Q Consensus 286 ~e~li~~ 292 (487)
+-++++.
T Consensus 153 ~~~~l~~ 159 (464)
T 4g84_A 153 MCEILSS 159 (464)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 60
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.62 E-value=0.00018 Score=76.20 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
-.-.+++..|.+.+|+.+.+.||.||.||+|.+..- .|.. +.|.+++...
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~--------------------- 116 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGK--------------------- 116 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETT---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCC---------------------
Confidence 356778899999999999999999999999987532 1111 2233322110
Q ss_pred cccccccCcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCCC--cccccccceeeEEccCCHHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMAC 285 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~~~~lm~~ 285 (487)
.+ .+.+++|+.-.+... .+... .+ =|+|++++|||+|...+. .=.-||+|.|.+..|++.++..+.
T Consensus 117 ---~~-l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E 192 (519)
T 4hvc_A 117 ---TE-LAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEE 192 (519)
T ss_dssp ---EE-EEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHH
T ss_pred ---cc-cccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHH
Confidence 00 012345655444433 33322 12 279999999999943110 012499999999999998888877
Q ss_pred HHHHHHH
Q 011364 286 ATAYLQY 292 (487)
Q Consensus 286 ~e~li~~ 292 (487)
++.++..
T Consensus 193 ~~~~l~~ 199 (519)
T 4hvc_A 193 VLQILDL 199 (519)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 61
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.59 E-value=0.0002 Score=76.15 Aligned_cols=117 Identities=19% Similarity=0.304 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++.++++.+++.+.+.||.||.||.|.+... ++.+ +.|.++
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~------------------------- 325 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA------------------------- 325 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec-------------------------
Confidence 3457888999999999999999999999999998543 1111 122210
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCC------CCcccccccceeeEEccCC--H
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFAD--L 279 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~--~ 279 (487)
+.++||....+..+ .+...- + =|+|++++|||+|... +-.-.-||+|.|.+. |+. .
T Consensus 326 -------~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~ 397 (536)
T 3err_A 326 -------ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASL 397 (536)
T ss_dssp -------TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCH
T ss_pred -------CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCch
Confidence 23456766666654 232221 2 2799999999999631 112345999999985 554 3
Q ss_pred HHHHHHHHHHHHHH
Q 011364 280 KDDMACATAYLQYV 293 (487)
Q Consensus 280 ~~lm~~~e~li~~~ 293 (487)
++..+..++++...
T Consensus 398 e~s~~~~e~~~~~~ 411 (536)
T 3err_A 398 EASDRAFQELLENA 411 (536)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47777777776554
No 62
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.56 E-value=0.00019 Score=75.60 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...+++..|++.+++.+.+.||.||.||.|.+... . | ..+.|.++.... ...
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~---------------~~~---- 258 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGS---------------EKS---- 258 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCc---------------ccc----
Confidence 356788999999999999999999999999987532 1 1 123444321100 000
Q ss_pred ccccccCcccccccchhhhHH-HHhcc------C-CceEEEecccccCCCC------CCcccccccceeeEEccCCHHH-
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKD- 281 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g------~-~kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~- 281 (487)
.+--+.++||....+..+- +...- + =|+|++++|||+|... +---.-||+|.|.+. |+.-++
T Consensus 259 --~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e 335 (522)
T 3vbb_A 259 --DDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDN 335 (522)
T ss_dssp -------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTT
T ss_pred --ccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChH
Confidence 0000234567666555542 22111 1 2799999999999741 101224999999985 554333
Q ss_pred -HHHHHHHHHHHH
Q 011364 282 -DMACATAYLQYV 293 (487)
Q Consensus 282 -lm~~~e~li~~~ 293 (487)
..+..++++...
T Consensus 336 ~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 336 KSWEMFEEMITTA 348 (522)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 555555555443
No 63
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.50 E-value=0.00029 Score=74.87 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
+-.-.++|..|.+.+|+.|...||.||.||++.... ++.....|.+.+.+
T Consensus 77 lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~------------------------ 132 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG------------------------ 132 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTT------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCC------------------------
Confidence 455678899999999999999999999999997642 11111233332211
Q ss_pred cccccCcccccccchhhh---HHHHhcc---CCceEEEecccccCCCCC-CcccccccceeeEEccC-C--H--HHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA-D--L--KDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~---l~ll~~g---~~kvfeI~~~FR~E~~~t-~rHl~EFtmlE~e~~~~-~--~--~~lm~~ 285 (487)
|+.+.|+ |++= .|+++.. --|.|+||+|||.|.... .=+.-||+|++++.-.. + . -+++.+
T Consensus 133 -----g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l 205 (517)
T 4g85_A 133 -----GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKI 205 (517)
T ss_dssp -----SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHH
T ss_pred -----CCEEEeC--CcCcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHH
Confidence 2322332 2221 1433332 137899999999996421 12457999999998653 2 2 244554
Q ss_pred HHHHHH
Q 011364 286 ATAYLQ 291 (487)
Q Consensus 286 ~e~li~ 291 (487)
+-++++
T Consensus 206 ~~~~l~ 211 (517)
T 4g85_A 206 MCEILS 211 (517)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 64
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.46 E-value=0.00017 Score=76.29 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHH-hhhcCCeEEEeCCeeeccCCC---CC-----CCCceeeecCCCcccccCCCCCCCC-CCC-C
Q 011364 144 FGAVARVRNALAYATHK-FFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIP-KTK-D 212 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~-ff~~~gF~EV~TP~L~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~-~~~-~ 212 (487)
.-.-.+++..|.+.+++ ++.+.||.||.||+|.+...- |. .+.|.++....+..+....-.+... ... +
T Consensus 227 ~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~ 306 (522)
T 2cja_A 227 GPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVP 306 (522)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccc
Confidence 34567788899999996 689999999999999985320 11 1223222100000000000000000 000 0
Q ss_pred CCccccccccCcccccccchhhhH-HHHh------ccCC-ceEE-EecccccCCC--CCCcccccccceeeEEccCCHHH
Q 011364 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYA------TALS-NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKD 281 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~Spql~l-~ll~------~g~~-kvfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~ 281 (487)
+ .++...--+.+++|+...+... .+.. ..+. |+|| +++|||+|.. ++---.-||+|.|++. |++-++
T Consensus 307 ~-~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 307 T-KLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp H-HHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred c-cccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 0 0000000023445655444332 2221 1122 7999 9999999933 1112345999999998 788888
Q ss_pred HHHHHHHHHHHHHHH
Q 011364 282 DMACATAYLQYVVRY 296 (487)
Q Consensus 282 lm~~~e~li~~~~~~ 296 (487)
..+..++++......
T Consensus 385 s~ee~ee~i~~~~~~ 399 (522)
T 2cja_A 385 VLKCAEELHDRYMHI 399 (522)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888343333
No 65
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.45 E-value=0.00038 Score=73.71 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhh--cCCeEEEeCCeeeccC
Q 011364 146 AVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~--~~gF~EV~TP~L~~~~ 179 (487)
.-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 467788999999999999 9999999999999865
No 66
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.99 E-value=0.00081 Score=66.90 Aligned_cols=143 Identities=19% Similarity=0.170 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCc-ccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSS-REAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~-~~~~~~~~~~~~~~~~~~~ 215 (487)
...-+++..|.+.+++ ..+.||.||.||.|..... ++.+ ..|.++...... .+.. .++.+ ..+ .
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~--ll~~~---~~~-~ 133 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINA--AVSRF---DAG-G 133 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHH--HHHHH---HTT-S
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhh--hhhhh---ccc-c
Confidence 4566777889999999 9999999999999998543 2222 233322110000 0000 00000 000 0
Q ss_pred cccccccCcccccccchhhhH-HHHhc-c-C----CceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-A-L----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~-g-~----~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (487)
+++...-+.+.||....+..+ .+... + + -|+-.+++|||+|.+.+-..+-+|+|.|+.. |++-+++.+..|+
T Consensus 134 ~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~ 212 (346)
T 3mf2_A 134 DWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRER 212 (346)
T ss_dssp CGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHH
T ss_pred ccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHH
Confidence 011111123456777777766 44442 2 2 3566799999999876666777999999865 6789999999988
Q ss_pred HHHHHHH
Q 011364 289 YLQYVVR 295 (487)
Q Consensus 289 li~~~~~ 295 (487)
++..+-.
T Consensus 213 l~~~ae~ 219 (346)
T 3mf2_A 213 WMVRAQA 219 (346)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 67
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.68 E-value=0.019 Score=50.91 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=61.7
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-chHh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-~~~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
+.|+|.|.|.+++...+...+.|.|+||. .|.|++..+.. .-.. ... +..|++|.|.|.+..-.. +.+|.++
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr~---~rqI~~~ 121 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFRS---EVELIAQ 121 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSSS---SCEEEEE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCC-eEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeCC---EEEEEEE
Confidence 67999999999998877788899999983 69999886541 1111 124 899999999999976432 5789999
Q ss_pred EEEEEcc
Q 011364 108 KIVLVGK 114 (487)
Q Consensus 108 ~i~vls~ 114 (487)
++.++..
T Consensus 122 ~i~~v~d 128 (159)
T 3kf6_A 122 SFEELRD 128 (159)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 9988774
No 68
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.65 E-value=0.018 Score=49.45 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=65.0
Q ss_pred cceeeccccCCCC--C---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch-HhHhccCCCCC
Q 011364 10 KKLKIVDVKGGPN--E---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (487)
Q Consensus 10 ~~~~i~~i~~~~~--~---~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~-~~~~~~~L~~g 83 (487)
+-++|++|++... + -....=..|++.|+|.++.....-.-+.|.|++| ..|.|........- ..... +..|
T Consensus 7 ~PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g 83 (132)
T 3kdf_D 7 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 83 (132)
T ss_dssp EECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTT
T ss_pred eeEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCC
Confidence 3467778776431 1 0011125699999999999887666678999997 14999887653211 11334 9999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEcc
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~ 114 (487)
++|.|.|.+..-++ ...|.+..+..+..
T Consensus 84 ~yVrV~G~l~~f~g---~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 84 TYVKVAGHLRSFQN---KKSLVAFKIMPLED 111 (132)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEECSS
T ss_pred CEEEEEEEEEeECC---EEEEEEEEEEEcCC
Confidence 99999999987542 46778777775543
No 69
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.65 E-value=0.0051 Score=63.85 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=30.3
Q ss_pred ceEEEecccccCC--CCCCccc----ccccceeeEEccCCHHHHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAEN--SNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYV 293 (487)
Q Consensus 245 kvfeI~~~FR~E~--~~t~rHl----~EFtmlE~e~~~~~~~~lm~~~e~li~~~ 293 (487)
++.|||+|||+|. + +.+|- -||||.|.+. |++-++..+..+.++..+
T Consensus 175 ~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp EEEEEEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred EEEEEeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 6899999999994 3 33332 5999999984 666655555555555444
No 70
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=96.63 E-value=0.005 Score=59.85 Aligned_cols=103 Identities=9% Similarity=0.014 Sum_probs=59.8
Q ss_pred HHHHHH--HhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--
Q 011364 154 LAYATH--KFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT-- 229 (487)
Q Consensus 154 i~~~iR--~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-- 229 (487)
+.+.+| +.|...||.||.||++.....-.. +.| ++.. |+.+.|+
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f--~d~~-----------------------------g~~l~LRpd 53 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF--LDRK-----------------------------GNLFSIRED 53 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE--EETT-----------------------------SCEEEECCC
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc--CCCC-----------------------------CCEEEeCCc
Confidence 344455 999999999999999998654211 222 1111 1111111
Q ss_pred cchhhhH-HHHhcc--CCceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHHHHHHHHHHHH
Q 011364 230 VSGQLNA-ETYATA--LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 292 (487)
Q Consensus 230 ~Spql~l-~ll~~g--~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~~e~li~~ 292 (487)
..|.+.. ++.-.. --|.|++|+|||.|... . -||||++++.-..+ . -+++.++-++++.
T Consensus 54 ~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~-~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~ 119 (275)
T 1usy_A 54 FTKTVLNHRKRYSPDSQIKVWYADFVYRYSGSD-L---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp HHHHHHHHHTTCTTCCCEEEECCEEEEEEETTE-E---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcCCCCceEEEEeceEEecCCCC-C---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHH
Confidence 1122222 121111 24899999999999763 3 79999999986654 2 2444444444443
No 71
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.60 E-value=0.022 Score=46.95 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=66.5
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeec-------CC---CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~-------~g---~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~ 79 (487)
..++|+||.. +..|.|.|+|.++-. .| ++.=+.|.|.+| ++.+++..+.... .
T Consensus 4 ~~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~~----~-- 66 (105)
T 3dm3_A 4 DTYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTDI----D-- 66 (105)
T ss_dssp CEECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGGS----C--
T ss_pred cceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECccccc----c--
Confidence 4467777754 267999999988742 22 355578899986 5999887654321 4
Q ss_pred CCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCC
Q 011364 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~ 117 (487)
+.+||+|.+.|.++.... +++||++.+...+.+|..
T Consensus 67 l~~Gdvv~i~g~vk~~~~--g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 67 VGRGDYVRVRGYIREGYY--GGLECTANYVEILKKGEK 102 (105)
T ss_dssp CCTTCEEEEEEEEEECTT--SSEEEEEEEEEEEECCC-
T ss_pred cCCCCEEEEEEEEEEccC--CCEEEEeCCceEEEeccc
Confidence 999999999999988653 369999999999999863
No 72
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.56 E-value=0.021 Score=49.29 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=65.8
Q ss_pred ccceeeccccCCCCC-------CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch--HhHhccC
Q 011364 9 RKKLKIVDVKGGPNE-------GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~-------~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~--~~~~~~~ 79 (487)
.+-++|++|++.... -....=..|++.|+|.+++......-+.|.|++| .|.+......... .....
T Consensus 9 l~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG--~I~~~~W~~~~~~~~~~~~~-- 84 (136)
T 4gop_B 9 LRPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTG--QIEVRQWLDSSSDDSSKASE-- 84 (136)
T ss_dssp EEECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSC--EEEEEEECC--------CCS--
T ss_pred EEeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCC--CEEEEEecccCCcccccccc--
Confidence 345778888764210 0012225799999999999887666678999997 4999887643221 12334
Q ss_pred CCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEc
Q 011364 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls 113 (487)
+..|++|.|.|.+..-+. ...|.+..+..+.
T Consensus 85 ~~~g~yVrV~G~v~~f~g---~~qi~~~~ir~v~ 115 (136)
T 4gop_B 85 IRNNVYVRVLGTLKSFQN---RRSISSGHMRPVI 115 (136)
T ss_dssp CCTTCEEEEEEEEEEETT---EEEEEESEEEECS
T ss_pred cCCCCEEEEEEEEEEeCC---EEEEEEEEEEECC
Confidence 999999999999976532 4677877776543
No 73
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=96.44 E-value=0.0053 Score=64.00 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHh-h-hcCCeEEEeCCeeeccCCCCC---CCCceeeecCCCcccccCCCCCCCCCCCCCCc-cccc
Q 011364 146 AVARVRNALAYATHKF-F-QENGFIWISSPIITASDCEGA---GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI-DWSQ 219 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~f-f-~~~gF~EV~TP~L~~~~~eg~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 219 (487)
.=.+++..|.+.+++. + .+.|+.||.||+|.+..--.+ +..|...+... .. -++..+ +.+. ..-.
T Consensus 60 ~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e-----~~-~~~g~~---~eem~~~~~ 130 (454)
T 1g5h_A 60 LGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIRE-----IL-QDREPS---KEQLVAFLE 130 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHH-----HH-CC---C---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHH-----Hh-hccCCC---HHHHHHHHH
Confidence 4577889999988877 4 589999999999998652111 11000000000 00 000000 0000 0000
Q ss_pred cccCccccccc--chhhh---HHHHhc---cCC-ceEEEecccc---cCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 220 DFFEKPAFLTV--SGQLN---AETYAT---ALS-NVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 220 ~~~~~~~~L~~--Spql~---l~ll~~---g~~-kvfeI~~~FR---~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
++++.+.||+. +|-.+ +..+-. -+. +++|||+||| ||-+ + +| .-||||.|++. |++.++..
T Consensus 131 ~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~~pe~~~ 207 (454)
T 1g5h_A 131 NLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FTPTRTSS 207 (454)
T ss_dssp HHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHH
T ss_pred hhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-EeCHhhHH
Confidence 12344556664 33232 222211 233 7999999999 6853 2 43 46999999986 78888777
Q ss_pred HHHHHHHHHHHHH
Q 011364 284 ACATAYLQYVVRY 296 (487)
Q Consensus 284 ~~~e~li~~~~~~ 296 (487)
+..+.++.....-
T Consensus 208 e~~~~~~~~~~~~ 220 (454)
T 1g5h_A 208 QWLDFWLRHRLLW 220 (454)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666554433
No 74
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.32 E-value=0.0061 Score=66.76 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHhhh-cCCeEEEeCCeeecc
Q 011364 144 FGAVARVRNALAYATHKFFQ-ENGFIWISSPIITAS 178 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~ 178 (487)
.-.-.+++..|.+.+|+.|. ..||.||.||+|++.
T Consensus 97 lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 97 GPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 34567889999999999998 669999999999984
No 75
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.22 E-value=0.05 Score=44.01 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=60.9
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeee---c----CC---CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR---A----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR---~----~g---~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
.+|+||.+ +..|.+.|+|.++- . .| ++.=+.|.|.+| +|.+++..+... . . ++
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~ 65 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VK 65 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CC
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cC
Confidence 45777754 36799999998874 2 22 355577899996 589988765322 1 4 99
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEEEEEccC
Q 011364 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 82 ~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~ 115 (487)
+||+|.|.|.+.... +.+||.+.+...+.+|
T Consensus 66 ~Gdvv~i~g~v~~~~---~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 66 KGDIAEVSGYVKQGY---SGLEISVDNIGIIEKS 96 (97)
T ss_dssp TTCEEEEEEEEEEC-----CEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEcC---CeEEEEECCCcEEEEC
Confidence 999999999987654 3699999998888776
No 76
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.83 E-value=0.029 Score=62.39 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCce------eeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFC------VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~------vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
..++.+.+|+.|...||.|+.|..+++..-- +.|. +.-.|| ++ .++
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~---~~l~~~~~~~v~L~NP------------is----------~e~--- 546 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHA---KDFALQERPTISLLMP------------MS----------EAH--- 546 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTT---TTTCSSCCCCEECSSC------------SC----------TTS---
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHH---HhhCCCCCceEEEcCC------------Cc----------hhh---
Confidence 4567888999999999999999999876421 1121 111111 11 111
Q ss_pred ccccccchhhhH-HHHhc----cCC--ceEEEecccccCCCCCCcccccccceeeEEcc-------------CCHHHHHH
Q 011364 225 PAFLTVSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMA 284 (487)
Q Consensus 225 ~~~L~~Spql~l-~ll~~----g~~--kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~-------------~~~~~lm~ 284 (487)
..|++|-=--+ +.+.. +.. |+||||+|||.++. ...| +||+||..-.+. .|+.++..
T Consensus 547 -svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg 623 (795)
T 2rhq_B 547 -ATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKG 623 (795)
T ss_dssp -SEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHH
T ss_pred -hhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHH
Confidence 13555433333 44332 233 89999999997543 2357 999999976654 58999999
Q ss_pred HHHHHHHHH
Q 011364 285 CATAYLQYV 293 (487)
Q Consensus 285 ~~e~li~~~ 293 (487)
.+|.++..+
T Consensus 624 ~le~ll~~l 632 (795)
T 2rhq_B 624 VVDRVAEKL 632 (795)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998876
No 77
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.79 E-value=0.038 Score=46.01 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCCEEEEEEEEeee---e----cC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeec-C
Q 011364 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS-Q 96 (487)
Q Consensus 28 ~~~~V~v~GwV~~i---R----~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~-~ 96 (487)
.|+.|.+.|.|.++ | +. +++..+.|.|++| .|.+.+...... .... +..|++|.|+|.+... -
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~--~~~~--l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIK--LLKK--FREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGG--GGGT--CCTTSEEEEEEEEECCCS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhh--hhhc--CCCCCEEEEEeeEEcccc
Confidence 35788999999998 2 22 3688899999996 599988865422 2235 9999999999998654 2
Q ss_pred CCCceEEEEEeEEEEEccC
Q 011364 97 GSKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 97 ~~~~~~el~~~~i~vls~~ 115 (487)
. +.++|.+.+...+.++
T Consensus 89 ~--g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 89 G--GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp S--SSCEEEECTTCCEEEE
T ss_pred C--CeEEEEECCCceEEEC
Confidence 2 3577877665544444
No 78
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.51 E-value=0.041 Score=59.19 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCC--C------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccC
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~--e------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (487)
.++.+.+|+.|...||.||-|+.+++..- . +..+.+.+ .|| ++ .++
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L--~NP------------is----------~e~-- 447 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI--SNP------------KT----------AEF-- 447 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB--SSC------------SS----------GGG--
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE--cCC------------Cc----------hhH--
Confidence 45678899999999999999999987420 0 00111111 111 11 111
Q ss_pred cccccccchhhhH-HHHhccC-----CceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHH
Q 011364 224 KPAFLTVSGQLNA-ETYATAL-----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (487)
Q Consensus 224 ~~~~L~~Spql~l-~ll~~g~-----~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (487)
..|++|-=--+ +.+.... =|+||+|+|||.++. ..+|.+|+.++..-++.. ++.++...++.++..
T Consensus 448 --svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 448 --QVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp --SEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 13555533333 4443221 279999999998765 467889999999776653 577777666665554
No 79
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.36 E-value=0.052 Score=44.90 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=59.6
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEee
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (487)
++++++..- ..+..|++.|.|.+.-..- . ..++|++| .|+|-++... | ....+++++-|.+.|.
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d--~-Y~F~D~TG--~I~VeId~~~--w---~g~~v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDD--L-YVFKDASG--TINVDIDHKR--W---NGVTVTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETT--E-EEEEETTE--EEEEECCGGG--S---TTCCCCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCC--e-EEEECCCc--cEEEEEChhh--c---CCcccCCCCEEEEEEE
Confidence 567777653 5678999999998764332 2 45899996 4888776532 2 2113899999999999
Q ss_pred EeecCCCCceEEEEEeEEEEEcc
Q 011364 92 VVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~vls~ 114 (487)
+-+.-. ..||.|..|++|.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 997542 46899999998753
No 80
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.30 E-value=0.047 Score=50.82 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCce-------eeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFC-------VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~-------vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
.++.+.+|+.|...||.||-|-.+++... .+.|. +.-.|| ++ .+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~---~~~~~~~~~~~~v~l~NP------------ls----------~e---- 57 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAY---YDGLESYPSKNLVMLLNP------------LS----------AD---- 57 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGG---GTTCSSSCGGGCEEBSSG------------GG----------CS----
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHH---HHhhcccCcCCeEEEeCC------------cc----------hh----
Confidence 45788999999999999999999998532 11110 111111 11 01
Q ss_pred ccccccchhhhH-HHHhc----cCC--ceEEEecccccCCCCCC-----cccccccceeeEEcc-------------CCH
Q 011364 225 PAFLTVSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADL 279 (487)
Q Consensus 225 ~~~L~~Spql~l-~ll~~----g~~--kvfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~~~-------------~~~ 279 (487)
--.|++|-=--+ +.++. +.. |+||||+||+.++.+.. .+..|..+|-+-+++ .|+
T Consensus 58 ~~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df 137 (213)
T 3ig2_A 58 LNCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSV 137 (213)
T ss_dssp CCEECSCSHHHHHHHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCH
Confidence 114666543333 54443 333 79999999998653211 234578888876655 357
Q ss_pred HHHHHHHHHHHHHH
Q 011364 280 KDDMACATAYLQYV 293 (487)
Q Consensus 280 ~~lm~~~e~li~~~ 293 (487)
.++...+|.++..+
T Consensus 138 ~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 138 YELKAYVENIFKRL 151 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777654
No 81
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=94.76 E-value=0.21 Score=50.57 Aligned_cols=77 Identities=13% Similarity=0.257 Sum_probs=60.5
Q ss_pred CCCEEEEEEEEeee-ec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHh-HhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 011364 28 VGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (487)
Q Consensus 28 ~~~~V~v~GwV~~i-R~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el 104 (487)
....++|.|.|.+. +. .|.-.|+.|.|++ ..|.|++-.....|.. ++. |.+||.|.|.|.+.. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~--~~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~-----g--tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEGGHVFFEIDTKF--GSVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK-----D--TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETTTEEEEEEEETT--EEEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET-----T--EE
T ss_pred cCceEEEEEEEecCcEeccCceEEEEEEcCC--CEEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC-----C--EE
Confidence 34789999999998 54 5778889999986 4699988653334544 456 999999999999765 1 78
Q ss_pred EEeEEEEEccC
Q 011364 105 KVNKIVLVGKS 115 (487)
Q Consensus 105 ~~~~i~vls~~ 115 (487)
.++++++++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999998775
No 82
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=94.75 E-value=0.2 Score=48.23 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=65.8
Q ss_pred cceeeccccCCCCC-C-C---CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch-HhHhccCCCCC
Q 011364 10 KKLKIVDVKGGPNE-G-L---DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (487)
Q Consensus 10 ~~~~i~~i~~~~~~-~-~---~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~-~~~~~~~L~~g 83 (487)
+.++|++|++.... + - ...=..|++.|+|.++...+...-+.|.|++| ..|.+.+......- ..... +..|
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~G 123 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 123 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTT
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCCC
Confidence 55788888875210 0 0 01114699999999998877666678999997 14888887543210 01234 9999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEcc
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~ 114 (487)
++|.|.|.+..-+. ...|.+..|..+..
T Consensus 124 ~yVrV~G~v~~f~g---~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 124 TYVKVAGHLRSFQN---KKSLVAFKIMPLED 151 (270)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEECSC
T ss_pred CEEEEEEEEEecCC---eeEEEEEEEEecCC
Confidence 99999999986542 46777777775544
No 83
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.50 E-value=0.09 Score=48.83 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
.++.+.+|+.|...||.||-|-.+++... .+.|..... .++-...++++ .+ -..|++|
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~---~~~~~~~~~-----~~~v~l~NPls----------~e----~~vmRts 64 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSY---YEGLKSHPR-----EMAVELMNPLS----------QE----LNCMRQT 64 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGG---GTTCSSSCG-----GGCCBCSSBSC----------SS----EEEECSS
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHH---HhhhcccCc-----CCeEEecCCcc----------HH----HHHHHHH
Confidence 46788999999999999999999998532 111100000 00000001111 11 1246665
Q ss_pred hhhhH-HHHh----ccCC--ceEEEecccccCCCCC-----CcccccccceeeEEcc-------------CCHHHHHHHH
Q 011364 232 GQLNA-ETYA----TALS--NVYTFGPTFRAENSNT-----SRHLAEFWMIEPELAF-------------ADLKDDMACA 286 (487)
Q Consensus 232 pql~l-~ll~----~g~~--kvfeI~~~FR~E~~~t-----~rHl~EFtmlE~e~~~-------------~~~~~lm~~~ 286 (487)
-=--+ +.++ .+.. |+||||+||+.++... ..+..|..+|-..+++ .|+.++...+
T Consensus 65 LlpgLL~~~~~N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~v 144 (213)
T 3ica_A 65 LLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVV 144 (213)
T ss_dssp SHHHHHHHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHH
Confidence 43333 4433 3444 7999999999764210 1345688888776654 4788888888
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
|.++..+
T Consensus 145 e~ll~~l 151 (213)
T 3ica_A 145 EQVLCRV 151 (213)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8887665
No 84
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=94.03 E-value=0.34 Score=44.91 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=58.5
Q ss_pred CCEEEEEEEEeeeecCC--------CeEEEEEEcCCCCe-eeEEEEeCCccchHh----HhccCCCCCcEEEEEeeEeec
Q 011364 29 GLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCLS-NMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPS 95 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~~g--------~i~Fi~lrD~~~~~-~lQvv~~~~~~~~~~----~~~~~L~~gd~V~V~G~~~~~ 95 (487)
=+.|.|.|.|..++-.- ...|+.|-|+||.. .|.|.++... +.. +.. ...|.+|.|+|++..-
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~--~~~~gl~l~~--~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ--FKEVGLTLDK--KNYGKIVELEGEIYNW 160 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH--HHTTTCCTTS--CCTTCEEEEEEEEEEC
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH--hhccCccccc--cCCCeEEEEEEEEEee
Confidence 36799999999997542 45899999999852 4666665321 111 112 4589999999999875
Q ss_pred CC-----CCceEEEEEeEEEEEccC
Q 011364 96 QG-----SKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 96 ~~-----~~~~~el~~~~i~vls~~ 115 (487)
.. +.-.-||.++++.+++..
T Consensus 161 r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 161 YDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccccceEEEEEEEEEeccC
Confidence 32 111469999999999875
No 85
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=92.75 E-value=1 Score=37.01 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=56.5
Q ss_pred CCEEEEEEEEeeeec--C-CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE-eeEeecCCCCceEEE
Q 011364 29 GLMIVVAGWVRTLRA--Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVEL 104 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~--~-g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~~~~~~~~~~~~el 104 (487)
++.|.+.|+|.++-. . +....+.|.|.||. |-+++.... .+.. +..|++|.|. |.+..-+ +.++|
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~----~~~~--~~~G~~V~i~n~~v~~~~---G~~~L 83 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA----ELPL--LEQGESYLLRSVVVGEYN---DRFQV 83 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG----CCCC--CCTTCEEEEEEEEEEEET---TEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc----cccc--cCCCCEEEEEEEEEEEEC---CEEEE
Confidence 577999999998854 2 23445788999974 888888632 1234 9999999999 6666543 36899
Q ss_pred EEeEEEEEccCCCC
Q 011364 105 KVNKIVLVGKSDPS 118 (487)
Q Consensus 105 ~~~~i~vls~~~~~ 118 (487)
.+.+...+.+....
T Consensus 84 ~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 84 QVNKNSSIEKLSEP 97 (109)
T ss_dssp EECSSSEEEECSSC
T ss_pred EECCceEEEECCCc
Confidence 98877666665433
No 86
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=92.43 E-value=0.71 Score=38.48 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=53.0
Q ss_pred CEEEEEEEEeee---e----cCC--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE-eeEeecCCCC
Q 011364 30 LMIVVAGWVRTL---R----AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSK 99 (487)
Q Consensus 30 ~~V~v~GwV~~i---R----~~g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~~~~~~~~~ 99 (487)
..|.+.|.|.++ | +.| .+.=+.|.|.|| +|.+.+..... .. +..|++|.|. |.+..-+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG--~I~~tlW~~~~-----~~--~~~G~vv~i~~g~v~~~~--- 80 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKHA-----GS--IKEGQVVKIENAWTTAFK--- 80 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGGT-----TC--CCTTCEEEEEEEEEEEET---
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC--EEEEEEECChh-----hc--CCCCCEEEEEeEEEEEeC---
Confidence 358899999887 4 234 355667789997 48888876432 24 8999999999 8776543
Q ss_pred ceEEEEEeEEEEEccCC
Q 011364 100 QKVELKVNKIVLVGKSD 116 (487)
Q Consensus 100 ~~~el~~~~i~vls~~~ 116 (487)
+.++|.+.+...+.++.
T Consensus 81 g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 81 GQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp TEEEEEECTTCEEEECC
T ss_pred CEEEEEECCCEEEEEcC
Confidence 35889888755555543
No 87
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=92.11 E-value=1.5 Score=35.82 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=60.6
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeee-----cCCC---eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR-----~~g~---i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~g 83 (487)
.+|+||... ...|.+.|.|.++- +.|+ +.=+.|.|.|| +|.+.+... . +.+|
T Consensus 4 ~kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG--~I~~tlW~~--------~--l~~G 63 (106)
T 2k75_A 4 VKIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA--RIRISSFGK--------Q--LQDS 63 (106)
T ss_dssp CCSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC--EEEEEEESS--------C--CCTT
T ss_pred EEHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC--eEEEEEEcC--------c--cCCC
Confidence 356777543 24578888887652 2453 66677889997 488888764 2 8999
Q ss_pred cEEEEE-eeEeecCCCCceEEEEEeEEEEEccCCCCCCCC
Q 011364 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (487)
Q Consensus 84 d~V~V~-G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~ 122 (487)
|+|.+. |.+..-+ +.++|.+.+...+.+.....|+.
T Consensus 64 dvv~i~ng~v~~~~---g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 64 DVVRIDNARVAQFN---GYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEEEEEET---TEEEEEECTTSEEEECCSCCCCS
T ss_pred CEEEEEeeEEeEEC---CEEEEEECCcEEEEECCCCCccc
Confidence 999999 7775542 36899998776666665445654
No 88
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.34 Score=40.24 Aligned_cols=92 Identities=9% Similarity=0.125 Sum_probs=63.4
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L 80 (487)
-+.|++|... ....+|+|||.++ |. .|++.=++|.|.+| .|++++..+..+ | ... |
T Consensus 4 ~~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f--~~~--l 69 (114)
T 1ynx_A 4 IFAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKF--NEI--L 69 (114)
T ss_dssp BCCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHH--HHH--S
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHH--Hhh--c
Confidence 4567788654 1347899999865 21 35777788999997 699999765322 2 124 9
Q ss_pred CCCcEEEEEeeEeec-CCC----CceEEEEEeEEEEEccCC
Q 011364 81 TTGASIWIQGNVVPS-QGS----KQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 81 ~~gd~V~V~G~~~~~-~~~----~~~~el~~~~i~vls~~~ 116 (487)
..|+++.+.+--++. ... ...+||....-+.+.+|.
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 999999999954433 211 347899888777777774
No 89
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=90.92 E-value=0.83 Score=38.38 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
..|+.|++-|+|.+++..|+..- |.++.+ +.++|.++.... .. + +.+|.|.|++.. ...|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~--l~s~Dg-~~Vtv~l~~p~~-----~~--l--~~~vEViG~V~~------~~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFI--LSDGEG-KNGTIELMEPLD-----EE--I--SGIVEVVGRVTA------KATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEE--EECTTS-CEEEEECSSCCS-----SC--C--CSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEE--EEeCCC-CEEEEEeCCCCC-----cc--c--CcEEEEEEEECC------CCeEEE
Confidence 68999999999999998776443 443333 357777765211 01 3 559999999974 245777
Q ss_pred eEEEEEccC
Q 011364 107 NKIVLVGKS 115 (487)
Q Consensus 107 ~~i~vls~~ 115 (487)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777766654
No 90
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=90.68 E-value=0.97 Score=50.09 Aligned_cols=107 Identities=12% Similarity=0.018 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDCE---G-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (487)
-..++.+.+|+.|...||.|+-|-.+++..-- + ..+.+.+ .|| ++ .++
T Consensus 490 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L--~NP------------is----------~d~---- 541 (785)
T 1b7y_B 490 APYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL--LNP------------LA----------PEK---- 541 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE--SSC------------SS----------TTS----
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE--cCC------------Cc----------hhh----
Confidence 35668889999999999999998888875310 0 1122222 111 11 111
Q ss_pred cccccchhhhH-HHHhc----c-CC--ceEEEecccccCCCCCCcccccccceeeEEcc------------CCHHHHHHH
Q 011364 226 AFLTVSGQLNA-ETYAT----A-LS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMAC 285 (487)
Q Consensus 226 ~~L~~Spql~l-~ll~~----g-~~--kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~------------~~~~~lm~~ 285 (487)
..|++|-=--+ +.+.. + .. |+||||+||| + +|+.||..-++. .|+.++...
T Consensus 542 svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~ 612 (785)
T 1b7y_B 542 AALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGY 612 (785)
T ss_dssp SEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHH
Confidence 13555433333 43332 3 33 7999999999 2 789999977665 479999999
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
+|.++..+
T Consensus 613 le~ll~~l 620 (785)
T 1b7y_B 613 LEALFARL 620 (785)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999876
No 91
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=90.37 E-value=0.68 Score=38.55 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=40.8
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~ 121 (487)
++||+...... .++. |+.|+-|.|+|.+.........++|+++.|+.|+.....-|+
T Consensus 49 i~vv~~Gk~AE--~~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLAL--LLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHHH--HHTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHHH--hhhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 78888765332 2345 999999999999997533335799999999999876544454
No 92
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=88.93 E-value=1.1 Score=37.12 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=43.9
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
..|+.|++-|+|.+.+. + . +.|....+ +.++|.++... . +..+.+|.|.|++.....+-|...|.+
T Consensus 16 ~~g~~VrivGkV~~~~g-~--~-~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG-N--T-LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET-T--E-EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC-C--E-EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999995 2 3 34664433 35777666431 2 556899999999985432212345544
Q ss_pred e
Q 011364 107 N 107 (487)
Q Consensus 107 ~ 107 (487)
.
T Consensus 82 ~ 82 (114)
T 4gop_A 82 F 82 (114)
T ss_dssp C
T ss_pred E
Confidence 3
No 93
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=84.10 E-value=5.6 Score=34.25 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=46.0
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 011364 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (487)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~ 105 (487)
...|+.|++-|+|.++-..|+.. .++...+ ..|+|.++... . -..+-+|.|.|+|.. +..|.
T Consensus 40 ~fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~~~~~~VEViG~V~~------~~tI~ 101 (142)
T 2pi2_E 40 QFIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATIL 101 (142)
T ss_dssp GSTTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEE
T ss_pred hhCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--ccCCCEEEEEEEECC------CCcEE
Confidence 36899999999999995445433 4554443 35666665321 1 234779999999954 23466
Q ss_pred EeEEEEEcc
Q 011364 106 VNKIVLVGK 114 (487)
Q Consensus 106 ~~~i~vls~ 114 (487)
+..+.-++.
T Consensus 102 ~~~~~~fGd 110 (142)
T 2pi2_E 102 CTSYVQFKE 110 (142)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 666655554
No 94
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=82.26 E-value=2.4 Score=39.75 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=62.8
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhH-hccC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGL 79 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~-~~~~ 79 (487)
..+.|++|... ...++|+|||.++ |. .|++.=++|.|.+| .|++++.....+ .+ ..
T Consensus 7 ~~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~--~~~~~-- 72 (246)
T 1jmc_A 7 KVVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVD--KFFPL-- 72 (246)
T ss_dssp CBCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHH--HHGGG--
T ss_pred ceEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHH--Hhhhh--
Confidence 44668888654 2357999999876 32 24666678999997 599999864321 12 23
Q ss_pred CCCCcEEEEEeeEeecCC-----CCceEEEEEeEEEEEccCC
Q 011364 80 ITTGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~ 116 (487)
|..|+++.+++--++... ..+.+||....-+.+.+|.
T Consensus 73 l~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 73 IEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 999999999995443321 1347899887666666664
No 95
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=81.81 E-value=1.3 Score=51.03 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCce
Q 011364 27 RVGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~ 101 (487)
..|+.|+|+|.|.+++.. | .++|+.|.|.+| .+.|++-++. |+..+. .|..+.+|.|+|++.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg--~~evvvf~~~--~~~~~~-~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETG--ALEVVVFGRA--YEGVSP-KLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTE--EEEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCC--CEEEEEcHHH--HHHHHH-HhccCCEEEEEEEEEECC----C
Confidence 357889999999988752 2 499999999996 4888887653 333332 389999999999998643 3
Q ss_pred EEEEEeEEEEEccC
Q 011364 102 VELKVNKIVLVGKS 115 (487)
Q Consensus 102 ~el~~~~i~vls~~ 115 (487)
+.|.+.++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 67888888766544
No 96
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=80.90 E-value=13 Score=31.58 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=54.3
Q ss_pred CCCCCEEEEEEEEe--ee-ec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCc
Q 011364 26 DRVGLMIVVAGWVR--TL-RA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (487)
Q Consensus 26 ~~~~~~V~v~GwV~--~i-R~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~ 100 (487)
...++.|+|.|.|. ++ |. ...+.|. |.|+. ..|.|....-.++ +++.|.-|.|+|++...
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~--~~v~V~Y~GilPD-------lFrEGqgVVa~G~l~~~----- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFT-IYDAE--GSVDVSYEGILPD-------LFREGQGVVVQGELEKG----- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEE-EECSS--CEEEEEEESCCCT-------TCCTTSEEEEEEEECSS-----
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEE-EEeCC--cEEEEEECCCCCc-------cccCCCeEEEEEEECCC-----
Confidence 35789999999999 45 43 2358875 78975 4688888765443 27889999999999642
Q ss_pred eEEEEEeEEEEEccCCCCC
Q 011364 101 KVELKVNKIVLVGKSDPSY 119 (487)
Q Consensus 101 ~~el~~~~i~vls~~~~~~ 119 (487)
-.+.+++ ||.||+..|
T Consensus 90 -g~F~A~e--VLAKhdekY 105 (136)
T 1sr3_A 90 -NHILAKE--VLAKHDENY 105 (136)
T ss_dssp -SEEEESS--CBCCSCCCC
T ss_pred -CeEEEEE--EEecCCCCC
Confidence 1345554 899997553
No 97
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=80.51 E-value=2.6 Score=34.23 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=35.4
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEE
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vl 112 (487)
++|++..+.. + +.. |+.|+-|.|+|.+....-+...+.+|+++|+.+
T Consensus 55 i~vv~~gk~A--e-~~~--l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA--E-EWQ--YRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH--H-HST--TCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh--h-hhc--cCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 5666654322 2 445 999999999999998765545799999999876
No 98
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=79.95 E-value=14 Score=31.49 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=57.0
Q ss_pred eeeccccCCCC--CCCCCCCCEEEEEEEEe--ee-ec--CCCeEEEEEEc-CCCCeeeEEEEeCCccchHhHhccCCCCC
Q 011364 12 LKIVDVKGGPN--EGLDRVGLMIVVAGWVR--TL-RA--QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (487)
Q Consensus 12 ~~i~~i~~~~~--~~~~~~~~~V~v~GwV~--~i-R~--~g~i~Fi~lrD-~~~~~~lQvv~~~~~~~~~~~~~~~L~~g 83 (487)
.+..|+..... +.....++.|+|.|.|. ++ |. ...+.|. |.| +. ..|.|....-.++ +++.|
T Consensus 13 ~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~--~~v~V~Y~GilPD-------lFrEG 82 (136)
T 1j6q_A 13 YTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFA-VHDSLG--GEILVTYDDLLPD-------LFREG 82 (136)
T ss_dssp ECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEE-EECTTC--CCEEEEECSCCTT-------SCCSS
T ss_pred eCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEecCCCCEEEEE-EEcCCC--CEEEEEECCCCCc-------cccCC
Confidence 45566654310 00136789999999996 45 43 2468886 788 54 4688888765443 27889
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCC
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSY 119 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~ 119 (487)
.-|.|+|++... + .+++++ ||.||+..|
T Consensus 83 qgVVa~G~l~~~--g----~F~A~e--VLaKhdekY 110 (136)
T 1j6q_A 83 QGIVAQGVLGED--G----KLAATE--VLAKHDENY 110 (136)
T ss_dssp SEEEEEEEECST--T----SEEEEE--EECCC----
T ss_pred CeEEEEEEECCC--C----eEEEEE--EEecCCCCC
Confidence 999999999643 1 245554 899997543
No 99
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=73.63 E-value=7.7 Score=31.25 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=32.8
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC--CCCceEEEEEeEEEEEcc
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ--GSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~--~~~~~~el~~~~i~vls~ 114 (487)
++|++....... ..+. |+.|+-|.|+|.+..+. .+....||++++++.|+.
T Consensus 50 ~~vv~~g~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQA-ITHS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTHH-HHTT--CCTTCEEEEEEEEEC--------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHHHH-HHhh--CCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECcC
Confidence 777777553211 1234 99999999999998762 122248999999998864
No 100
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=72.88 E-value=1.9 Score=43.87 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=33.6
Q ss_pred EEEEEEecCee-eeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCC
Q 011364 399 AAMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 469 (487)
Q Consensus 399 ~~fdl~~~G~~-El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~ 469 (487)
--|+.+.+|.| .|++|+. |+.+.+.+ | |..|..||+||+|||+.++-..
T Consensus 281 ~vFe~~~~~~g~~i~~GGR----YD~L~~~f---G---------------~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 281 VVFEGYGNRLGVPLCSGGR----YDELLSKF---H---------------RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEEETTCSSEEEEEEE----CTTHHHHT---T---------------CCCCEEEEEEEHHHHHHHHCC-
T ss_pred eEEEEEECCCCCeeecccc----cchhhhcc---C---------------CCCCEEEEEeeHHHHHHHHHhc
Confidence 35999998764 7888874 33333322 2 1248999999999999888654
No 101
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=72.36 E-value=18 Score=31.55 Aligned_cols=52 Identities=12% Similarity=0.237 Sum_probs=34.9
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CCC--ceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~~--~~~el~~~~i~vls~~ 115 (487)
+.|++....... ..+. |+.|+.|.|+|.+.... .+. ..+||.|++|++|...
T Consensus 58 i~vv~wg~~Ae~-~~~~--l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 58 HRIAFFNRLAEI-VGEY--LRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEETHHHHH-HHHH--CCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEhHHHHH-HHhh--cCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 677776543211 1245 99999999999997642 221 2589999999998764
No 102
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=72.21 E-value=28 Score=39.51 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=55.9
Q ss_pred CCEEEEEEEEeee--ec--CCC-eEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 29 GLMIVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 29 ~~~V~v~GwV~~i--R~--~g~-i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
...|+|.|.|-.+ |. +|+ +.-+.|.|.++ +|.|..-.+. ..-+.... |+.|+.|.|.|.+...+-. +++
T Consensus 17 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~--~~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~~ 91 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTN--SILVKMFSRDKEDAELMSG--VKKGMWVKVRGSVQNDTFV-RDL 91 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSC--EEEEEEECSSHHHHHHHHT--CCTTCEEEEEEEEEEETTT-TEE
T ss_pred cceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCC--CEEEEEeecccchHHHHhc--CCCCCEEEEEEEEEeccCC-cce
Confidence 3579999999866 32 344 55567899985 4777543332 22233456 9999999999999876432 367
Q ss_pred EEEEeEEEEEccC
Q 011364 103 ELKVNKIVLVGKS 115 (487)
Q Consensus 103 el~~~~i~vls~~ 115 (487)
.+.+.+|..+.+.
T Consensus 92 ~~~~~~~~~~~~~ 104 (1041)
T 3f2b_A 92 VIIANDLNEIAAN 104 (1041)
T ss_dssp EEEEEEEEEECCC
T ss_pred EEEeeeeEEeccc
Confidence 7888888766653
No 103
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=71.05 E-value=9.5 Score=28.95 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=34.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++...| +|++|.++ +...+..+......... ++.||.|.|.
T Consensus 8 iv~G~V~~v~~~G--~fV~l~~~-----~~Gllh~sel~~~~~~~--~~~Gd~V~v~ 55 (80)
T 2k52_A 8 FYKGVVTRIEKYG--AFINLNEQ-----VRGLLRPRDMISLRLEN--LNVGDEIIVQ 55 (80)
T ss_dssp EEEEEEEEEETTE--EEEEEETT-----EEEEECGGGCSSCCGGG--CCTTCEEEEE
T ss_pred EEEEEEEEEeCCE--EEEEECCC-----CEEEEEHHHCCccccee--eCCCCEEEEE
Confidence 4899999999887 89999764 45666654422111235 9999999876
No 104
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=69.08 E-value=5.5 Score=40.87 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=62.4
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
-+.|++|... ...++|+|||.++ |. .|++.-++|.|.+| .|++++..+..+ .+. ..|.
T Consensus 3 ~~~I~~L~p~--------~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~--~f~-~~l~ 69 (444)
T 4gop_C 3 IYPIEGLSPY--------QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAVD--RFY-PLLQ 69 (444)
T ss_dssp CCCSTTCCTT--------CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHHH--HHT-TTCC
T ss_pred ceeHHHCCCC--------CcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHHH--HHH-Hhee
Confidence 3567888664 1347999999854 42 25777788999987 699999875321 221 1399
Q ss_pred CCcEEEEEeeEeecCC-----CCceEEEEEeEEEEEccCC
Q 011364 82 TGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 82 ~gd~V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~ 116 (487)
.|+++.+++--++... ....+||....-+.+.++.
T Consensus 70 eG~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~ 109 (444)
T 4gop_C 70 ENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECT 109 (444)
T ss_dssp TTCEEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECS
T ss_pred cCCEEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEcc
Confidence 9999999985444321 1346899887655555554
No 105
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=66.47 E-value=28 Score=29.87 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=48.4
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
..|.+.|.|-.. +.|. +.|+|++|.-+++. .+. +..- ...+..|.+|-|.|.+..+.. +-.|.+.++
T Consensus 59 s~VWmQG~VV~~-~~g~---~~LdDgTG~~~v~g---~~~--vp~g-~p~l~~G~YVMV~G~v~~~s~---eP~i~AvKm 125 (150)
T 3mxn_B 59 AAVWMQGRVVMA-DRGE---ARLRDPSGDFSVRG---LER--VPRG-RPCLVPGKYVMVMGVVQACSP---EPCLQAVKM 125 (150)
T ss_dssp SEEEEEEEEEEE-ETTE---EEEEETTEEEEEEC---GGG--SCCC-SCCCSTTCEEEEEEEEEECSS---SCEEEEEEE
T ss_pred EEEEEEeEEEEe-CCCe---EEEECCCceEEEee---ccc--cCCC-CcccCCCCEEEEEEEEEecCC---CceEEEEEe
Confidence 679999999996 4453 56999997532222 111 0000 113889999999999987532 567888888
Q ss_pred EEEccC
Q 011364 110 VLVGKS 115 (487)
Q Consensus 110 ~vls~~ 115 (487)
.=||..
T Consensus 126 ~DLS~~ 131 (150)
T 3mxn_B 126 TDLSDN 131 (150)
T ss_dssp EECCSC
T ss_pred eeCCCC
Confidence 777663
No 106
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=64.82 E-value=11 Score=41.83 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=65.7
Q ss_pred HHHHHHHhhhcCCeEEEeCCeeeccCC----CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 011364 154 LAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (487)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TP~L~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (487)
..+.+|+.|...||.|+-|-.+++..- ....+. +.-.|| ++ .++ -.|+
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~--v~l~NP------------is----------~e~----svmR 545 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEA--LLLPSP------------IS----------VEM----SAMR 545 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCC--CBCSSC------------SC----------STT----CEEC
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCe--EEEcCC------------Cc----------hhH----HHHH
Confidence 456789999999999999999987421 001111 111111 11 111 1355
Q ss_pred cchhhhH-HHHhc----cCC--ceEEEecccccCCCCCCcccccccceeeEEcc-------------CCHHHHHHHHHHH
Q 011364 230 VSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAY 289 (487)
Q Consensus 230 ~Spql~l-~ll~~----g~~--kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~-------------~~~~~lm~~~e~l 289 (487)
+|-=--+ +.++. +.. |+||||+||+.++. ...+..|-.+|=.-.++ .|+.++...+|.+
T Consensus 546 tsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~l 624 (795)
T 3pco_B 546 LSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQ-APLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV 624 (795)
T ss_dssp SSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTT-SSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCC-cccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHH
Confidence 5543333 43332 333 79999999987643 23444566666654433 4788988888888
Q ss_pred HHHH
Q 011364 290 LQYV 293 (487)
Q Consensus 290 i~~~ 293 (487)
+..+
T Consensus 625 l~~l 628 (795)
T 3pco_B 625 LDLT 628 (795)
T ss_dssp TTTS
T ss_pred HHHc
Confidence 7654
No 107
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=64.69 E-value=6.1 Score=32.05 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=34.8
Q ss_pred CCCCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc---hHh
Q 011364 1 MGSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ 74 (487)
Q Consensus 1 ~~~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~---~~~ 74 (487)
||+.-|.-..+..++++..++=+ ..-..|+ .+.|.|.++...| +|++|.++ +..++..+... ...
T Consensus 1 ~~~~~~~~~~~~~iKq~~~~p~~~~~~~~~~G~--iv~G~V~~v~~~G--~fV~l~~~-----~~Gll~~sel~~~~~~~ 71 (109)
T 2khj_A 1 MGSSHHHHHHSSGLVPRGSHMFNNWVALNKKGA--IVTGKVTAVDAKG--ATVELADG-----VEGYLRASEASRDRVED 71 (109)
T ss_dssp --------------------CHHHHTTTCCSSS--EEEEEEEEECSSC--EEEECSTT-----CBCCBCTTCCCSSSSSS
T ss_pred CCccccccccccchhhcccCHHHHHhhcCCCCC--EEEEEEEEEECCe--EEEEECCC-----CEEEEEHHHcCcccccC
Confidence 67777777777788888765311 1123455 4789999999888 99999654 23445443321 111
Q ss_pred HhccCCCCCcEEEEE
Q 011364 75 VKSGLITTGASIWIQ 89 (487)
Q Consensus 75 ~~~~~L~~gd~V~V~ 89 (487)
... .++.||.|.|.
T Consensus 72 ~~~-~~~vGd~V~v~ 85 (109)
T 2khj_A 72 ATL-VLSVGDEVEAK 85 (109)
T ss_dssp GGG-SCCTTCEEEEE
T ss_pred hhh-ccCCCCEEEEE
Confidence 111 28999998876
No 108
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=64.39 E-value=28 Score=27.40 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=46.1
Q ss_pred CCCCCCEEEEEEEEeeeecC----CCeEEEE-EEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCC
Q 011364 25 LDRVGLMIVVAGWVRTLRAQ----SSVTFIE-VNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (487)
Q Consensus 25 ~~~~~~~V~v~GwV~~iR~~----g~i~Fi~-lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~ 97 (487)
.+..|+-|.|+|-|..||+. |+..||. +||......-.+.++-..-+-..+.. |..|++..+.|.+...+.
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvea--lsngsvativgqvhqvqd 120 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEA--LSNGSVATIVGQVHQVQD 120 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTT--CCTTSEEEEEEECCCCCS
T ss_pred hhhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHh--hcCCceeeEeeeeeeeec
Confidence 35789999999999999873 5777764 57764311112333322112223456 999999999999876543
No 109
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=64.31 E-value=27 Score=29.62 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=36.9
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCC--CCceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG--SKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~--~~~~~el~~~~i~vls~~ 115 (487)
++|++.......- .+. |+.|+-|.|+|.+..... +...+.+++++++.|+..
T Consensus 67 i~vv~wGk~AE~~-~~y--l~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHENQAI-THS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGGGGG-GTT--CCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHHHHH-HHh--cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 7888876543211 134 999999999999987632 234677899999998653
No 110
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=62.58 E-value=59 Score=27.81 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=56.0
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeee----------c---------CCCeEEEEEEcCCCCeeeEEEEeCCccch
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR----------A---------QSSVTFIEVNDGSCLSNMQCVMTSDAEGY 72 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR----------~---------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~ 72 (487)
++|+||... ...|.+.|+|..+- . .+.++=+.|-|.+| +|-+++..+.
T Consensus 17 ~kI~dL~pg--------~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG--~I~ftlW~e~--- 83 (145)
T 1wjj_A 17 VKVEQLKPG--------TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG--CILFTARNDQ--- 83 (145)
T ss_dssp CCSTTCCTT--------CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC--EEEEEECTTH---
T ss_pred eEHHHcCCC--------CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCc--EEEEEEecCC---
Confidence 457788653 23488888886652 1 23577778889986 4777776542
Q ss_pred HhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccC
Q 011364 73 DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 73 ~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~ 115 (487)
+.. ++.||+|.+.+-...-.. +.++|.+.+..-+.+.
T Consensus 84 --~~~--l~~Gd~v~i~na~v~~~~--G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 84 --VDL--MKPGATVILRNSRIDMFK--GTMRLGVDKWGRIEAT 120 (145)
T ss_dssp --HHH--TCTTCEEEEEEEEEEEET--TEEEEEECTTCCBCCC
T ss_pred --cCc--CCCCCEEEEeccEEEeEC--CEEEEEECCCEEEEEC
Confidence 334 899999999986555433 3688888754444443
No 111
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=61.81 E-value=17 Score=29.26 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=31.0
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~ 110 (487)
|+|++..+.. +.+.. +..|+.|.|+|.+.........+=++++.+.
T Consensus 50 i~vv~wGk~A--E~~~~--~~kGs~V~VeGrL~trs~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMA--SVLDR--IAPGTVLECVGFLARKHRSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHH--HHHTT--SCTTCEEEEEEEEEECC----CEEEEEEEEE
T ss_pred EEEEEEhHHH--HHHhh--cCCCCEEEEEEEEEeCcCCCCeeEEEEeccc
Confidence 7888876432 22445 8999999999999977655445777777664
No 112
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=57.51 E-value=8 Score=39.13 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=15.5
Q ss_pred CccceeccHHHHHHHHcC
Q 011364 451 PHAGFGLGFERLVQFATG 468 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g 468 (487)
|.-|||||+|||+..+..
T Consensus 301 pa~Gf~igieRl~~~l~e 318 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEA 318 (421)
T ss_pred CeEEEeecHHHHHHHHHh
Confidence 556899999999998875
No 113
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=56.50 E-value=3 Score=43.12 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=31.0
Q ss_pred EEEEEec-C-eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011364 400 AMDMLVP-R-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 468 (487)
Q Consensus 400 ~fdl~~~-G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g 468 (487)
-|+.+.+ | .+-|++|+. |+.+.+.+ |-+ ...|..|||||+|||+.+|-.
T Consensus 301 vFE~~~~~g~~~~I~~GGR----YD~Lv~~f---g~~-------------~~~PavGFaig~eRl~~~l~~ 351 (456)
T 3lc0_A 301 VFEGFDREGKFRALCGGGR----YDNLLTTY---GSP-------------TPIPCAGFGFGDCVIVELLQE 351 (456)
T ss_dssp EEEEEETTSCSSCSEEEEE----CSSHHHHT---TCS-------------SCCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCcceEeeccc----HHHHHHHh---CCC-------------CCCCEEEEEeEHHHHHHHHHh
Confidence 4888875 3 246788873 33333322 211 024889999999999998853
No 114
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=55.85 E-value=27 Score=33.02 Aligned_cols=82 Identities=9% Similarity=0.152 Sum_probs=49.4
Q ss_pred CEEEEEEEEee---eecC--CC-eEEEEE-EcCC-------CCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeec
Q 011364 30 LMIVVAGWVRT---LRAQ--SS-VTFIEV-NDGS-------CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (487)
Q Consensus 30 ~~V~v~GwV~~---iR~~--g~-i~Fi~l-rD~~-------~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~ 95 (487)
..|.+.|+|.+ +|.. |+ ++-+.| .+.. ...-++|++...... .+.. |+.||.|.|+|.+...
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae--~~~~--l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAE--WASE--LRKGDGLLVIGRLVND 204 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHH--HHTT--CCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHH--Hhhh--cCCCCEEEEEEEEEee
Confidence 56889999987 4532 32 332233 2221 012367776643221 1224 9999999999999764
Q ss_pred C----CCC--ceEEEEEeEEEEEccC
Q 011364 96 Q----GSK--QKVELKVNKIVLVGKS 115 (487)
Q Consensus 96 ~----~~~--~~~el~~~~i~vls~~ 115 (487)
. .+. ..+||.+++|++|...
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred EEECCCCCEEEEEEEEEEEEEECccc
Confidence 2 222 2488999999988653
No 115
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=55.38 E-value=4.9 Score=39.80 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=32.3
Q ss_pred EEEEEEecCee-eeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011364 399 AAMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 467 (487)
Q Consensus 399 ~~fdl~~~G~~-El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~ 467 (487)
--|+++.+|.| -|++|+ ||+.+.+.+ | . ..|..||+||+|||++++-
T Consensus 288 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g-~--------------~~pavGfaiglerl~~~l~ 335 (344)
T 1z7m_A 288 LMFKAYSSAANQPILSGG----RYDQLLSNF---Q-E--------------EAFAIGFCCHMDTILKALE 335 (344)
T ss_dssp EEEEEEETTEEEEEEEEE----ECHHHHHTS---S-S--------------CCCCEEEEEEHHHHHHHHH
T ss_pred eEEEEEECCCCCeEeeCc----cHHHHHHHh---C-C--------------CCCeEEEEEEHHHHHHHHH
Confidence 45999988643 777776 344444332 2 1 2378999999999998774
No 116
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=52.38 E-value=87 Score=25.29 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=45.7
Q ss_pred CCEEEEEEEEeeeec-----CCCeEEEEE---EcC--CCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEee-cC-
Q 011364 29 GLMIVVAGWVRTLRA-----QSSVTFIEV---NDG--SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP-SQ- 96 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~-----~g~i~Fi~l---rD~--~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~-~~- 96 (487)
+..|.+.|+|.+=-. +| -.|... .+. ....-|-|++...... ... +..|+-|.|.|.+.. ..
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G-~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe---~~~--~~kG~~v~v~G~lrsy~~~ 84 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYG-EKFFNFILEVPRLSETKDYLPITISNRLFE---GMN--LEVGTRVKIEGQLRSYNRK 84 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETT-EEEEEEEEEEECTTSCEEEEEEEEEGGGST---TCC--CCTTCEEEEEEEEEEEECC
T ss_pred CCEEEEEEEECCCceEEEecCC-cEEEEEEEEeCCCCCCCcEEEEEEEhHHhh---HHh--hcCCCEEEEEEEEEecceE
Confidence 355899999875322 23 222222 111 1113467777654322 123 679999999999964 21
Q ss_pred ---CC--CceEEEEEeEEEEEc
Q 011364 97 ---GS--KQKVELKVNKIVLVG 113 (487)
Q Consensus 97 ---~~--~~~~el~~~~i~vls 113 (487)
.+ .--+||.|.+++.|.
T Consensus 85 ~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 85 SPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp --------EEEEEEEEEEEEEC
T ss_pred ECCCCCEEEEEEEEEEEEEEcc
Confidence 11 124899999999885
No 117
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=51.53 E-value=5.6 Score=41.13 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=32.0
Q ss_pred EEEEEecCe---eeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011364 400 AMDMLVPRI---GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 468 (487)
Q Consensus 400 ~fdl~~~G~---~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g 468 (487)
-|+.+.+|. |-|++|+... .+.+.+. | |-.|..|||||+|||+.++..
T Consensus 310 vFe~~~~~~~~~~~i~~GGRYD----~L~~~f~--g---------------~~~pavGfaiGieRli~~L~e 360 (465)
T 3net_A 310 VYETTLIGHEALGSICSGGRYE----ELVGTFI--G---------------EKMPGVGISIGLTRLISRLLK 360 (465)
T ss_dssp EEEEEETTCGGGCCSSEEEEES----SSSGGGT--C---------------SCCCEEEEEEEHHHHHHHHHH
T ss_pred EEEEEECCCCccceecccccHH----HHhhhhc--C---------------CCCceeeeeccHHHHHHHHHH
Confidence 499999874 5678776432 2222111 2 124889999999999988864
No 118
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=51.12 E-value=66 Score=26.65 Aligned_cols=61 Identities=8% Similarity=0.184 Sum_probs=42.8
Q ss_pred EEEEcCCCCeeeEE-EEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccC
Q 011364 50 IEVNDGSCLSNMQC-VMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 50 i~lrD~~~~~~lQv-v~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~ 115 (487)
+.|+||. ..+|. ++...... .+..|.|+.|++|.+.=....+-.. +.--|.+.+++||..+
T Consensus 47 l~lSDG~--~~~~~~mLatqln~--~v~~g~l~~~sIirl~~y~~~~v~~-~k~vliIl~levl~~~ 108 (123)
T 2b29_A 47 LLMSDGL--NTLSSFMLATQLNP--LVEEEQLSSNCVCQIHRFIVNTLKD-GRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEECSS--EEEEEEEECGGGHH--HHHTTSSCTTCEEEEEEEEEEECSS-SCEEEEEEEEEEEECS
T ss_pred EEEECcc--hheeeehhHHHHHH--HHhcCCccCCCEEEEEEEEEEEecC-CcEEEEEEeeEEeecc
Confidence 6799998 46998 88765432 2445569999999998764433220 2356788899999874
No 119
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=49.28 E-value=30 Score=28.86 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=33.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc--h-HhH-hccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~-~~~-~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++...| +||+|.++ ++..+..+... + ... .. ++.||.|.|.
T Consensus 10 iv~G~V~~i~~~G--~FV~l~~~-----~~Glihisel~~~~~~~~~~~--~~vGd~V~vk 61 (130)
T 2k4k_A 10 VYTGKVTGLQAYG--AFVALDEE-----TQGLVHISEVTHGFVKDINEH--LSVGDEVQVK 61 (130)
T ss_dssp EEEEEEEEEETTE--EEEEEETT-----EEEEEEGGGTSSSCCSCGGGT--CCTTCEEEEE
T ss_pred EEEEEEEEEeCCe--EEEEECCC-----cEEEEEHHHCCcccccCcccc--CCCCCEEEEE
Confidence 5789999998887 99999654 46777654321 1 112 23 8999999876
No 120
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=48.83 E-value=8.7 Score=36.22 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=41.9
Q ss_pred CceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011364 396 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 396 ~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Ird 474 (487)
.....+|+.++|| ||.-=- -|.. .|++- -|.++=+--|+|||.|.+-|.+||-|
T Consensus 134 AwGLGWEVWldGM-EITQFT-----------YFQQvGGi~c-------------~pv~~EITYGLERiamylQ~vd~vyd 188 (298)
T 1j5w_A 134 AWGVGWEVWLDGM-EITQFT-----------YFQQIGGISL-------------KDIPLEITYGLERIAMYLQGVDNVYE 188 (298)
T ss_dssp EEEEEEEEEETTE-EEEEEE-----------EEEEBTTBCC-------------SSCCEEEEEEHHHHHHHHHTCSSGGG
T ss_pred cccccceeeEcce-eeehhh-----------hhhhcCCccc-------------CccceeecccHHHHHHHHhCCCceec
Confidence 3457899999998 986310 0111 24442 46778899999999999999999999
Q ss_pred ccc
Q 011364 475 AIP 477 (487)
Q Consensus 475 v~~ 477 (487)
+..
T Consensus 189 l~w 191 (298)
T 1j5w_A 189 VQW 191 (298)
T ss_dssp CEE
T ss_pred ccc
Confidence 864
No 121
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=48.03 E-value=26 Score=28.56 Aligned_cols=52 Identities=8% Similarity=0.181 Sum_probs=34.0
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CCC--ceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~~--~~~el~~~~i~vls~~ 115 (487)
++|++....... ..+. |+.||.|.|+|.+.... .+. ..+||.+++|++|...
T Consensus 52 ~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTAEN-TALY--CQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHHHH-HHHH--CCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHH-HHHh--CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 667666432211 1245 99999999999998642 221 2589999999998764
No 122
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=47.91 E-value=9.4 Score=36.19 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=42.6
Q ss_pred CceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011364 396 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 396 ~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Ird 474 (487)
.....+|+.++|| ||.-= . -|.. .|++. -|.++=+--|+|||.|.+-|.+||-|
T Consensus 146 AWGLGWEVWldGM-EVTQF-----T------YFQQvGGi~c-------------~pv~~EITYGLERlamylQ~vd~vyD 200 (311)
T 3rf1_A 146 AWGLGWEVWLDGM-EVTQF-----T------YFQQVGGIAV-------------DLVSAEITYGLERIAMYLQNVDNVYD 200 (311)
T ss_dssp EEEEEEEEEETTE-EEEEE-----E------EEEEETTEEC-------------SSCCEEEEEEHHHHHHHHTTCSSGGG
T ss_pred ccccceEEEEcCe-eEeee-----e------eeeeeCCccc-------------cccceeeehhHHHHHHHHhCCCeeee
Confidence 3457899999998 98621 0 1111 23332 46778899999999999999999999
Q ss_pred ccccC
Q 011364 475 AIPFP 479 (487)
Q Consensus 475 v~~FP 479 (487)
+..=.
T Consensus 201 l~w~~ 205 (311)
T 3rf1_A 201 IVWSE 205 (311)
T ss_dssp SEEEE
T ss_pred ccccC
Confidence 87543
No 123
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=45.42 E-value=1.1e+02 Score=24.08 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=50.8
Q ss_pred CCCCEEEEEEEEee--e-ec--CCCeEEEEEEcC--CCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCC
Q 011364 27 RVGLMIVVAGWVRT--L-RA--QSSVTFIEVNDG--SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (487)
Q Consensus 27 ~~~~~V~v~GwV~~--i-R~--~g~i~Fi~lrD~--~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~ 99 (487)
..++.++|.|-|.. + |. ...+.|. |.|+ .+ .+|.|....-.++ +++.|.-|.|+|++....
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~~~-~~v~V~Y~GilPD-------lFrEGqgVV~~G~l~~~~--- 73 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRFR-LEDKDNTS-KTVWVLYKGAVPD-------TFKPGVEVIIEGGLAPGE--- 73 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEEE-EECSSCTT-CEEEEEEESCCCT-------TCCTTCEEEEEEEECTTC---
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEEE-EEcCCCCC-cEEEEEECCCCCc-------cccCCCeEEEEEEEeCCC---
Confidence 56789999999973 4 43 2358875 7886 12 4688888865443 278899999999996311
Q ss_pred ceEEEEEeEEEEEccCC
Q 011364 100 QKVELKVNKIVLVGKSD 116 (487)
Q Consensus 100 ~~~el~~~~i~vls~~~ 116 (487)
-.+.+++ ||.||+
T Consensus 74 --g~F~A~e--vLaKh~ 86 (94)
T 2kct_A 74 --DTFKART--LMTKCP 86 (94)
T ss_dssp --SEEEEEE--EEESSC
T ss_pred --CEEEEeE--EEEeCC
Confidence 1245554 788886
No 124
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=44.08 E-value=9.5 Score=38.20 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=31.5
Q ss_pred EEEEEEecCee-eeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011364 399 AAMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 467 (487)
Q Consensus 399 ~~fdl~~~G~~-El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~ 467 (487)
--|+.+.+|.| .|++|+.-. .+.+.+ | |..|..||+||+|||+.++-
T Consensus 317 ~vFe~~~~~~g~~i~~GGRYD----~L~~~f---G---------------~~~pAvGFaiglerL~~~l~ 364 (373)
T 3rac_A 317 LVFEMFAPGVGAPIAQGGRYD----ELLAQF---G---------------AGAPAVGFAFEVERVMAVLE 364 (373)
T ss_dssp EEEEEECTTCSSCSEEEEECT----TTTGGG---T---------------CCCCCEEEEEEHHHHHHHHH
T ss_pred eEEEEEECCCCCeEeeccccc----HHHHhh---C---------------CCCCeEEEEEEHHHHHHHHH
Confidence 45999998764 677776432 222211 2 12589999999999998764
No 125
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=41.62 E-value=8.8 Score=39.29 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=15.2
Q ss_pred CccceeccHHHHHHHHc
Q 011364 451 PHAGFGLGFERLVQFAT 467 (487)
Q Consensus 451 P~~G~giGidRL~m~l~ 467 (487)
|.-|||||+|||++++-
T Consensus 336 pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 336 PCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CEEEEEECHHHHHHHHH
T ss_pred CCccccccHHHHHHHHH
Confidence 78899999999998874
No 126
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=41.44 E-value=37 Score=27.57 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchH----hH-hccCCCCCcEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----QV-KSGLITTGASIWIQ 89 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~----~~-~~~~L~~gd~V~V~ 89 (487)
..|+ .+.|.|.++...| +|++|.++ +...+..+...+. .. .. ++.||.|.|.
T Consensus 29 ~~G~--~~~G~V~~v~~~G--~FV~l~~~-----~~Glvhisel~~~~~~~~~~~~--~~vGd~V~vk 85 (115)
T 2khi_A 29 PEGT--KLTGRVTNLTDYG--CFVEIEEG-----VEGLVHVSEMDWTNKNIHPSKV--VNVGDVVEVM 85 (115)
T ss_dssp CSSC--EEEEEEEEEETTE--EEEECSTT-----CEEEEETTSSSCSSTTCSSTTT--CCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEECCE--EEEEECCC-----CEEEEEHHHCCccccccCcccE--ECCCCEEEEE
Confidence 3454 5899999999988 89999643 4677776543221 11 23 8899999876
No 127
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=40.86 E-value=35 Score=28.66 Aligned_cols=52 Identities=12% Similarity=0.285 Sum_probs=35.2
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CCC--ceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~~--~~~el~~~~i~vls~~ 115 (487)
+.|++-...... ..+. |+.||.|.|+|.+.... .+. ..+||.|++|+.|...
T Consensus 51 ~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTAEI-ANQY--LSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHHHH-HHHH--CCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHHHH-HHHh--CCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 667666432211 1245 99999999999997642 222 2488999999998753
No 128
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=40.24 E-value=42 Score=28.97 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=34.1
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
+.|++....... ..+. |+.|+-|.|+|.+.... .+ ...+||.+++|.+|...
T Consensus 65 ~~v~~wg~~Ae~-~~~~--l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 65 FRIVTFGRLAEF-ARTY--LTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEHHHHHH-HHHH--CCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHH-HHhh--CCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 666666432211 1245 99999999999998753 11 23589999999999764
No 129
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=39.68 E-value=12 Score=38.75 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=16.7
Q ss_pred CCccceeccHHHHHHHHcCC
Q 011364 450 VPHAGFGLGFERLVQFATGV 469 (487)
Q Consensus 450 pP~~G~giGidRL~m~l~g~ 469 (487)
.|..||++|+|||+.+|...
T Consensus 327 ~PavGfa~gleRl~~~l~~~ 346 (467)
T 4e51_A 327 TAACGWAMGIERILELLKEE 346 (467)
T ss_dssp CCEEEEEEEHHHHHHHHHHT
T ss_pred CCceeehHHHHHHHHHHHhc
Confidence 37779999999999988653
No 130
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=39.51 E-value=8.6 Score=39.57 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred CC-ccceeccHHHHHHHHcC
Q 011364 450 VP-HAGFGLGFERLVQFATG 468 (487)
Q Consensus 450 pP-~~G~giGidRL~m~l~g 468 (487)
|+ .+|||||+|||+..+..
T Consensus 330 p~~~~gfgiGveRli~al~e 349 (458)
T 2i4l_A 330 PIHGGSYGVGVSRLLGAIIE 349 (458)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred ceEEeeecccHHHHHHHHHH
Confidence 55 56999999999998754
No 131
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=38.85 E-value=13 Score=38.91 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=15.6
Q ss_pred CCccceeccHHHHHHHHc
Q 011364 450 VPHAGFGLGFERLVQFAT 467 (487)
Q Consensus 450 pP~~G~giGidRL~m~l~ 467 (487)
-|.-||++|+|||++++-
T Consensus 388 ~pavGfa~gierl~~~le 405 (517)
T 4g85_A 388 VPCVGLSIGVERIFSIVE 405 (517)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCcccccchHHHHHHHHH
Confidence 378899999999998874
No 132
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=37.46 E-value=29 Score=29.07 Aligned_cols=36 Identities=14% Similarity=0.482 Sum_probs=26.8
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEccC
Q 011364 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~----~~--~~~~el~~~~i~vls~~ 115 (487)
|..||.|.|+|.+.... .+ ...+||.|++|++|+..
T Consensus 86 l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 86 VKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp CCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 99999999999998642 12 12589999999998764
No 133
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=37.23 E-value=59 Score=28.66 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=33.5
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHh--ccCCCCCcEEEEE
Q 011364 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVK--SGLITTGASIWIQ 89 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~--~~~L~~gd~V~V~ 89 (487)
.|+ .+.|.|.++...| +|++|.+..+ +...+..+......+. ...++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~i~~fG--aFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDD--IVMVNVQQIAEMG--AYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTC--EEEEEEEEEETTE--EEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred CCC--EEEEEEEEEecce--EEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 454 5789999999988 9999943332 4666765543221111 1137888888776
No 134
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=37.05 E-value=13 Score=37.90 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.1
Q ss_pred CccceeccHHHHHHHHcCC
Q 011364 451 PHAGFGLGFERLVQFATGV 469 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~ 469 (487)
|.-|||||+|||+.++...
T Consensus 306 pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 306 PAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CEEEEEEEHHHHHHHHHHT
T ss_pred CeEEEEEcHHHHHHHHHhc
Confidence 5678999999999988743
No 135
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=36.44 E-value=40 Score=37.14 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCCEEEEEEEEeeeec--C--CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCC--CcEEEEEeeEeec
Q 011364 28 VGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT--GASIWIQGNVVPS 95 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~--~--g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~--gd~V~V~G~~~~~ 95 (487)
.|+.|+|.|.|.+... . +++.=+.+.|++| .++++.-.. .|- .+. +++ |+.+.|.|++...
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~f~~--~~~-~~~--~~~~~g~~~~~~G~~~~~ 230 (780)
T 1gm5_A 164 PGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLV--HVPLKWFNQ--DYL-QTY--LKQLTGKEVFVTGTVKSN 230 (780)
T ss_dssp SSCCCEEEECCCCCEEEECSSCEEEEEEECCSSC--CEEEEECSC--CTT-HHH--HHTTCSSCEEEEEEECSC
T ss_pred CCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCc--eEEEEEECc--HHH-Hhh--CccCCCCEEEEEEEEEEc
Confidence 4678999999987632 2 2344456789986 488877652 121 133 677 9999999999863
No 136
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=35.00 E-value=60 Score=28.83 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=33.4
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch---HhHhccCCCCCcEEEEE
Q 011364 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---DQVKSGLITTGASIWIQ 89 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~---~~~~~~~L~~gd~V~V~ 89 (487)
.|+ .+.|.|.++...| +|++|.+..+ +...+..+.... ..... .++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~I~~fG--aFV~L~e~~g---~eGLvhiSels~~~v~~~~~-~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VED--VVMVNVRSIAEMG--AYVSLLEYNN---IEGMILLSELSRRRIRSINK-LIRIGRNECVV 71 (182)
T ss_dssp TTC--EEEEEEEEECSSE--EEEEETTTTT---EEEEEEGGGC-------------CTTCEEEEE
T ss_pred CCC--EEEEEEEEEeccE--EEEEEccCCC---cEEEEEHHHCCCcccCCHHH-hcCCCCEEEEE
Confidence 454 6799999999998 9999954332 567777554321 11211 37888888776
No 137
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=34.94 E-value=87 Score=25.28 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=30.5
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCC----C--CceEEEEEeEEE
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIV 110 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~----~--~~~~el~~~~i~ 110 (487)
+.|++-.+.... ..+. |+.||-|.|+|.+....= + ....||.|++|.
T Consensus 55 i~vv~wgk~AE~-~~~y--l~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 55 LKVVGWGAVAQE-LQDR--CRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EEEEEETHHHHH-HHHH--CCTTCEEEEEEEEEEEC--------CCEEEEEEEEEE
T ss_pred EEEEEEhHHHHH-HHHh--CCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEE
Confidence 777777543221 1245 999999999999986531 1 134788887764
No 138
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=34.31 E-value=13 Score=37.45 Aligned_cols=18 Identities=44% Similarity=0.909 Sum_probs=15.3
Q ss_pred CccceeccHHHHHHHHcC
Q 011364 451 PHAGFGLGFERLVQFATG 468 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g 468 (487)
|.-|||||+|||+..+..
T Consensus 300 pavGf~igveRl~~~l~e 317 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQA 317 (423)
T ss_dssp CEEEEEEEHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHh
Confidence 556899999999998864
No 139
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=34.01 E-value=12 Score=39.64 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=15.6
Q ss_pred CCc-cceeccHHHHHHHHcC
Q 011364 450 VPH-AGFGLGFERLVQFATG 468 (487)
Q Consensus 450 pP~-~G~giGidRL~m~l~g 468 (487)
+|+ +|||||+|||+..+..
T Consensus 435 ~p~~g~~giGveRli~~l~e 454 (572)
T 2j3l_A 435 SVIMGCYGIGVSRLLSAIVE 454 (572)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred eeeeeccccCHHHHHHHHHH
Confidence 565 5899999999988753
No 140
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=32.41 E-value=1.9e+02 Score=23.11 Aligned_cols=68 Identities=13% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCCEEEEEEEEeeeec----C-CCeEEEEEEcCCC-CeeeEEEEeCCccch--HhHhccCCCCCcEEEEEeeEeecC
Q 011364 28 VGLMIVVAGWVRTLRA----Q-SSVTFIEVNDGSC-LSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~----~-g~i~Fi~lrD~~~-~~~lQvv~~~~~~~~--~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
.+..+++-|+|+.+-. . +=.-|....|+.. ...=|.++---...| ..++. .|+.|++|.|+|+++..+
T Consensus 2 ~~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~-~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 2 AGSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKD-QVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp --CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC----------CCCTTCEEEEEEEEECCC
T ss_pred CccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHH-HHhCCCEEEEEeEEEeee
Confidence 3567899999999976 1 2234444455431 001111111000122 33443 599999999999998765
No 141
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.24 E-value=1e+02 Score=24.26 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=36.0
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-c-h--HhH-hccCCCCCcEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-G-Y--DQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-~-~--~~~-~~~~L~~gd~V~V~ 89 (487)
..|+ .+.|.|.++...| +|++|.+... .+...+..+.. . + ... .. ++.||.|.|.
T Consensus 11 ~vG~--i~~G~V~~v~~fG--~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~--~~~Gd~V~Vk 70 (103)
T 2eqs_A 11 TIGD--IYNGKVTSIMQFG--CFVQLEGLRK--RWEGLVHISELRREGRVANVADV--VSKGQRVKVK 70 (103)
T ss_dssp CTTC--EEEEEEEEECSSC--EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHH--CCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeccE--EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccE--eCCCCEEEEE
Confidence 3454 5789999999988 9999976210 14666765432 1 1 111 34 8899998887
No 142
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=30.67 E-value=20 Score=36.71 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=33.5
Q ss_pred CCceEEEecccccC-------C-CCCCcccccccceeeEEccCCH--HHHHHHHHHHHH
Q 011364 243 LSNVYTFGPTFRAE-------N-SNTSRHLAEFWMIEPELAFADL--KDDMACATAYLQ 291 (487)
Q Consensus 243 ~~kvfeI~~~FR~E-------~-~~t~rHl~EFtmlE~e~~~~~~--~~lm~~~e~li~ 291 (487)
..|+-...+|.|+. + ..|.||..=|.||== .+|.|| ++.+..+=+||.
T Consensus 59 ~~r~t~sQkCiRag~~hNDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~AwE~LT 116 (465)
T 1yfs_A 59 YKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGN-FSFGDYFKKEAIEYAWEFVT 116 (465)
T ss_dssp CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHH
T ss_pred CCceeccccccccCCCcccHhhcCCCCCccchheeccc-cchhhhhHHHHHHHHHHHHH
Confidence 57889999999942 1 237899888888863 457774 566666655554
No 143
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.37 E-value=35 Score=28.04 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=33.9
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc---hHhH-hccCCCCCcEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~---~~~~-~~~~L~~gd~V~V~ 89 (487)
.+|+ .+.|.|.++...| +||+| ++.+ +...+..+... +... .. ++.||.|.|.
T Consensus 21 ~vG~--iv~G~V~~I~~fG--aFV~l-~g~~---~~Glvhisel~~~~~~~~~~~--~~~Gd~V~Vk 77 (119)
T 2cqo_A 21 ALYT--IFQGEVAMVTDYG--AFIKI-PGCR---KQGLVHRTHMSSCRVDKPSEI--VDVGDKVWVK 77 (119)
T ss_dssp CTTC--EEEEEEEEEETTE--EEEEC-TTCS---SCEEEEHHHHCSSCCSCHHHH--CCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeCce--EEEEE-CCCc---EEEEEEHHHCCcccccChhhc--CCCCCEEEEE
Confidence 3454 5789999999988 99999 4421 24555433211 1111 24 8999999876
No 144
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=29.49 E-value=11 Score=41.14 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=42.3
Q ss_pred CceEEEEEEecCeeeeech-hHhhchHHHHHHHHHHcCCC--cccHHHHHHHHhcCCC-CccceeccHHHHHHHHcCCCC
Q 011364 396 RTVAAMDMLVPRIGELIGG-SQREERLEYLEGRLDELKLN--RDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVEN 471 (487)
Q Consensus 396 ~~~~~fdl~~~G~~El~~G-~~r~~~~~~~~~~~~~~g~~--~~~~~~yl~~~~~G~p-P~~G~giGidRL~m~l~g~~~ 471 (487)
+.-.|.|+++.|+ ||.|= +++-++- ...++. ...| . -+| ++---|+|+|||+|++-|.+|
T Consensus 196 p~Gpc~Ei~~dg~-EiwnlVfmq~~r~-------~~g~~~~~~~~y---~-----~l~~~~iDtG~GlER~~~~lqg~~s 259 (739)
T 2ztg_A 196 NAGPCLEAIVGGL-EVATLVFMNLEEH-------PEGDIEIKGARY---R-----KMDNYIVDTGYGLERFVWASKGTPT 259 (739)
T ss_dssp EEEEEEEEEETTE-EEEEEEEEEEEEC-------TTCCEEETTEEE---E-----EEEEEEEEEEEEHHHHHHHHHCCSS
T ss_pred CCCCeeEEEECCE-EeeeeeeEEeeec-------CCCceeecCccc---c-----CCCCCeEecCcCHHHHHHHHcCCCc
Confidence 3457899999998 99886 2221110 001110 0000 0 023 677899999999999999999
Q ss_pred cccccccC
Q 011364 472 IRDAIPFP 479 (487)
Q Consensus 472 Irdv~~FP 479 (487)
+=|+ .|+
T Consensus 260 ~yd~-~f~ 266 (739)
T 2ztg_A 260 VYDA-IFP 266 (739)
T ss_dssp HHHH-HCH
T ss_pred hHHh-hHH
Confidence 9998 564
No 145
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.26 E-value=61 Score=26.30 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=32.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc-cchHh---HhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQ---VKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~---~~~~~L~~gd~V~V~ 89 (487)
.+.|.|.++.+.| +|++|..+ + +..++..+. ..|.. .. ..++.||.|.|.
T Consensus 24 i~~G~V~~v~~fG--~fV~l~~~-~---~~~l~~~~~~~~~~~~~~~~-~~~~~Gd~V~vk 77 (119)
T 1wi5_A 24 LLTGTVSSLEDHG--YLVDIGVD-G---TRAFLPLLKAQEYIRQKNKG-AKLKVGQYLNCI 77 (119)
T ss_dssp EEEEEEEEECSSE--EEEECCCS-S---CEEEEEHHHHHHHHHHHSSS-CCCCTTCEEEEE
T ss_pred EEEEEEEEEeCce--EEEEECCC-C---eEEEEEEecccccccccCcc-CEeCCCCEEEEE
Confidence 5889999999988 99999622 1 345454433 12211 11 139999999886
No 146
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=28.53 E-value=2e+02 Score=21.96 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=35.6
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCC-ccc---hHhHhccCCCCCcEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEG---YDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~-~~~---~~~~~~~~L~~gd~V~V~ 89 (487)
..|+ .+.|.|. +...| +|++|.+..+ +...+..+ ... +...+. .+ .||.|.|.
T Consensus 10 ~vG~--~~~G~V~-v~~fG--~FVel~~~~~---~eGLvhis~el~~~~~~~~~~-~~-~Gd~V~Vk 66 (88)
T 1luz_A 10 NAGD--VIKGRVY-EKDYA--LYIYLFDYPH---FEAILAESVKMHMDRYVEYRD-KL-VGKTVKVK 66 (88)
T ss_dssp CTTC--EEEEEEE-EETTE--EEEEETTCTT---SEEEEGGGSSCCHHHHHHHHH-HH-TTCEEEEE
T ss_pred CCCC--EEEEEEE-EEccE--EEEEECCCCC---eEEEEEeeHHhCcccccCHhH-Ee-CCCEEEEE
Confidence 4455 5789999 99998 9999965222 56777765 432 222322 26 99999887
No 147
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=28.32 E-value=14 Score=37.22 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.6
Q ss_pred CccceeccHHHHHHHHc
Q 011364 451 PHAGFGLGFERLVQFAT 467 (487)
Q Consensus 451 P~~G~giGidRL~m~l~ 467 (487)
|.-|||+|+|||+..+-
T Consensus 302 P~vg~~igveRl~~~le 318 (420)
T 1qe0_A 302 TGIGFALSIERLLLALE 318 (420)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred CEEEEEecHHHHHHHHH
Confidence 55699999999999873
No 148
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=26.75 E-value=24 Score=35.91 Aligned_cols=48 Identities=33% Similarity=0.327 Sum_probs=32.4
Q ss_pred cCCceEEEeccccc-------CCC-CCCcccccccceeeEEccCCH--HHHHHHHHHHH
Q 011364 242 ALSNVYTFGPTFRA-------ENS-NTSRHLAEFWMIEPELAFADL--KDDMACATAYL 290 (487)
Q Consensus 242 g~~kvfeI~~~FR~-------E~~-~t~rHl~EFtmlE~e~~~~~~--~~lm~~~e~li 290 (487)
...|+-...+|.|. |+. .|.||..=|.||== .+|.|| ++.+..+=+||
T Consensus 57 ~~~r~~~sQkCiR~gGKHnDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~Awe~L 114 (441)
T 3hy0_A 57 NYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN-FSFGDYFKLDAILFAWLLL 114 (441)
T ss_dssp SCSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHH
T ss_pred CCCCccccccceecCCCCCCHHhhCCCCccccceeeccc-cccchhhHHHHHHHHHHHh
Confidence 35789999999996 222 37899988888863 457774 35555444443
No 149
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=26.25 E-value=1.2e+02 Score=27.26 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=31.4
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCC------CCceEEEEEeEEEE
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG------SKQKVELKVNKIVL 111 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~------~~~~~el~~~~i~v 111 (487)
+.|++-.+.... ..+. |+.||.|.|+|.+....= +...+||.|++|..
T Consensus 55 i~VvawgklAE~-v~~~--L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 55 LTCSVWRQAAEN-VAES--LQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEETHHHHH-HHHH--CCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEhHHHHH-HHHh--cCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 667776543211 1345 999999999999986531 12358888888763
No 150
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=25.93 E-value=91 Score=25.52 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=32.9
Q ss_pred eEEEEeC-CccchHhHhccCCCCCcEEEEEeeEeec----C--CCC--ceEEEEEe----EEEEEccC
Q 011364 61 MQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPS----Q--GSK--QKVELKVN----KIVLVGKS 115 (487)
Q Consensus 61 lQvv~~~-~~~~~~~~~~~~L~~gd~V~V~G~~~~~----~--~~~--~~~el~~~----~i~vls~~ 115 (487)
+.|++-. ..... ..+. |+.||.|.|+|.+... + .+. ...||.|+ ++++|+.-
T Consensus 56 ~~v~~wg~~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k 120 (124)
T 3ulp_A 56 HRIVVYDQNIVDL-IDKY--LRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDK 120 (124)
T ss_dssp EEEEECCHHHHHH-HHHH--CCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC--
T ss_pred EEEEEEEchHHHH-HHhh--cCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCc
Confidence 6676665 32211 1245 9999999999999753 2 221 35888887 88888653
No 151
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=25.50 E-value=18 Score=39.49 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.9
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccC
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDAIPFP 479 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv~~FP 479 (487)
||---|+|+|||++.+-|.+|.=|+ .|+
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HHH
Confidence 5556799999999999999999888 663
No 152
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=24.59 E-value=43 Score=28.49 Aligned_cols=83 Identities=12% Similarity=0.237 Sum_probs=48.2
Q ss_pred CEEEEEEEEee---eecC--C-CeEEEEE-EcC------CC-----CeeeEEEEeCCccchHhHhccCCCCCcEEEEEee
Q 011364 30 LMIVVAGWVRT---LRAQ--S-SVTFIEV-NDG------SC-----LSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (487)
Q Consensus 30 ~~V~v~GwV~~---iR~~--g-~i~Fi~l-rD~------~~-----~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (487)
..|+|.|+|.+ +|.. | .++-+.| .+. +| ..-+.|++....... ..+. |+.||.|.|+|.
T Consensus 6 N~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~ 82 (145)
T 1qvc_A 6 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEV-ASEY--LRKGSQVYIEGQ 82 (145)
T ss_dssp EEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHH-HHHH--CCTTCEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHH-HHHh--cCCCCEEEEEEE
Confidence 35788888876 3532 3 2333333 121 01 124777777543211 1245 999999999999
Q ss_pred EeecC----CCC--ceEEE---EEeEEEEEccC
Q 011364 92 VVPSQ----GSK--QKVEL---KVNKIVLVGKS 115 (487)
Q Consensus 92 ~~~~~----~~~--~~~el---~~~~i~vls~~ 115 (487)
+.... .+. ..+|| .+++|++|...
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 97642 221 24677 77788877653
No 153
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=23.28 E-value=43 Score=36.94 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=32.3
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 32 V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
=.+.|+|.++..+ |+.-..+..|.+ ..+|||+-.. + +..|+.|-|.
T Consensus 44 ~~vvg~v~~~~~h-kL~~~~vd~g~~-~~~~Iv~ga~--------n--~~~g~~v~va 89 (795)
T 2rhq_B 44 NLVVGYIQSKEKG-SGNICQVDIGEE-EPVQIVCGAP--------N--VDAGQHVIVA 89 (795)
T ss_dssp EEEEEEEEEEECS-SSCEEEEECSSS-SCEEEECCCT--------T--CCTTCEEEEE
T ss_pred CeEEEEEEEEEEE-eEEEEEEEcCCC-eEEEEEeCCc--------h--hhCCCEEEEE
Confidence 4567999999888 777777777764 3589988643 2 5556666555
No 154
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=23.20 E-value=1.6e+02 Score=27.54 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred CCCCcEEEEEeeEeecCCC----C----ceEEEEEeEEEEEcc
Q 011364 80 ITTGASIWIQGNVVPSQGS----K----QKVELKVNKIVLVGK 114 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~~----~----~~~el~~~~i~vls~ 114 (487)
+++||-|.|+|.+...+.. . -..-|.|..|+.+++
T Consensus 225 ~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 225 ARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp SCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred ccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 8999999999998764421 1 134456666666553
No 155
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=21.71 E-value=1.7e+02 Score=25.64 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=34.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcC---C--CCeeeEEEEeCCccc---hHhHhccCCCCCcEEEEE
Q 011364 33 VVAGWVRTLRAQSSVTFIEVNDG---S--CLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 33 ~v~GwV~~iR~~g~i~Fi~lrD~---~--~~~~lQvv~~~~~~~---~~~~~~~~L~~gd~V~V~ 89 (487)
.|.|+|.++...+ +|++|..- . -...++.++..++.. .+.+.. .++.||+|.+.
T Consensus 60 iV~G~V~~V~~~g--a~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~-~~~~GD~V~ak 121 (179)
T 3m7n_A 60 VVLGRVVDLRNSI--ALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISE-AVGYLDILKAR 121 (179)
T ss_dssp EEEEEEEEECSSE--EEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGG-TCCTTCEEEEE
T ss_pred EEEEEEEEEeCCc--EEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhh-cCCCCCEEEEE
Confidence 6789999998765 89999751 1 001267777754311 112221 39999999887
No 156
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=21.35 E-value=4.3e+02 Score=23.41 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=47.6
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeee----c-CCC---eEEEEEEcCCC---CeeeEEEEeCCccchHhHhccCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR----A-QSS---VTFIEVNDGSC---LSNMQCVMTSDAEGYDQVKSGLI 80 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR----~-~g~---i~Fi~lrD~~~---~~~lQvv~~~~~~~~~~~~~~~L 80 (487)
+++++++.. -..++.|.|.|=|...+ . .|+ .+-+.|.|.+. ...|.|.+-.... +.+.. +
T Consensus 30 ~~~r~~l~~-----~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~--e~LP~--V 100 (187)
T 1qzg_A 30 QSIRSSQEL-----QKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQG--NDLPV--I 100 (187)
T ss_dssp ECHHHHTSC-----CSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSS--SCSCC--C
T ss_pred EEHHHHHhh-----ccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCCh--hhCCC--C
Confidence 456666543 24578899999996653 2 344 56677889772 1246665543211 12333 5
Q ss_pred -CCCcEEEEEeeEeecCC
Q 011364 81 -TTGASIWIQGNVVPSQG 97 (487)
Q Consensus 81 -~~gd~V~V~G~~~~~~~ 97 (487)
..||+|.+...-.+.-.
T Consensus 101 ~~~GDIIlL~rvkiq~~~ 118 (187)
T 1qzg_A 101 KQVGQPLLLHQITLRSYR 118 (187)
T ss_dssp CSTTCEEEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEEEEC
Confidence 78999999997666543
No 157
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=20.31 E-value=1.5e+02 Score=25.93 Aligned_cols=83 Identities=10% Similarity=0.228 Sum_probs=48.0
Q ss_pred CEEEEEEEEee---eecC--CC-eEEEEE-EcC------CC-----CeeeEEEEeCC-ccchHhHhccCCCCCcEEEEEe
Q 011364 30 LMIVVAGWVRT---LRAQ--SS-VTFIEV-NDG------SC-----LSNMQCVMTSD-AEGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 30 ~~V~v~GwV~~---iR~~--g~-i~Fi~l-rD~------~~-----~~~lQvv~~~~-~~~~~~~~~~~L~~gd~V~V~G 90 (487)
..|+|.|+|-+ +|.. |+ ++-+.| .+. +| ..-+.|++-.. .... ..+. |+.|+.|.|+|
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~-~~~~--l~KG~~V~VeG 100 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKI-ALQY--LHKGSKVYIEG 100 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHH-HHHH--CCTTCEEEEEE
T ss_pred eEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHH-HHHh--CCCCCEEEEEE
Confidence 46899999986 4542 32 332222 111 01 12366777654 2211 1245 99999999999
Q ss_pred eEeecC----CC--CceEEEEE----eEEEEEccC
Q 011364 91 NVVPSQ----GS--KQKVELKV----NKIVLVGKS 115 (487)
Q Consensus 91 ~~~~~~----~~--~~~~el~~----~~i~vls~~ 115 (487)
.+.... .+ ...+||.| .+|++|+..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 998652 11 12577877 588988764
Done!