RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011364
(487 letters)
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 999 bits (2584), Expect = 0.0
Identities = 426/486 (87%), Positives = 453/486 (93%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G VGEFRKKL+I DVKGG +EGL RVG + V GWVRTLRAQSSVTFIEVNDGSCLSNM
Sbjct: 80 GEAVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNM 139
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMT DAEGYDQV+SGLITTGAS+ +QG VV SQG KQKVELKV+KIV+VGKSDPSYPI
Sbjct: 140 QCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPI 199
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 200 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIP+S E S VD IPKTKDGLIDWSQDFF KPAFLTVSGQLN ETYAT
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYAT 319
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+YIL+NC
Sbjct: 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENC 379
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KEDM+FFNTWIEKGIIDRLS V E++FVQLSYTDAIELL+KAKKKFEF VKWG DLQSEH
Sbjct: 380 KEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 421
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 440 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERL 499
Query: 422 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
EYLE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 500 EYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRV 559
Query: 482 PGSVEF 487
PGS EF
Sbjct: 560 PGSAEF 565
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 785 bits (2030), Expect = 0.0
Identities = 275/478 (57%), Positives = 340/478 (71%), Gaps = 29/478 (6%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++ I D+ G VG + V GWVRT R + F+++ DGSC +Q V +
Sbjct: 2 MRVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGE 56
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
E ++++K +TTG+S+ + G VV S + Q EL+ KI ++G+ YPIQKKR S E
Sbjct: 57 EYFEEIKK--LTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIE 114
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPRTN FGAV R+RN LA A H+FF ENGF+W+ +PIITASDCEGAGE F V
Sbjct: 115 FLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRV 174
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL D+S+DFF K A+LTVSGQL AE YA AL VYTF
Sbjct: 175 TTLDL---------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTF 213
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNT RHLAEFWMIEPE+AFADL+D+M A L+YVV+Y+L+NC +D++F N
Sbjct: 214 GPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLN 273
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
++KG I+RL E F +++YT+AIE+L K+ KKFEF V+WG DL SEHERYL EE
Sbjct: 274 RRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEH 333
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
F PV V++YPK+IKAFYMR N DG+TVAAMD+L P IGE+IGGSQREERL+ LE R+
Sbjct: 334 F-KKPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIK 392
Query: 430 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
EL LN++ YWWYLDLR YGSVPH+GFGLGFERLV + TG++NIRD IPFPRTPG EF
Sbjct: 393 ELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAEF 450
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase. In a multiple
sequence alignment of representative asparaginyl-tRNA
synthetases (asnS), archaeal/eukaryotic type
aspartyl-tRNA synthetases (aspS_arch), and bacterial
type aspartyl-tRNA synthetases (aspS_bact), there is a
striking similarity between asnS and aspS_arch in gap
pattern and in sequence, and a striking divergence of
aspS_bact. Consequently, a separate model was built for
each of the three groups. This model, asnS, represents
asparaginyl-tRNA synthetases from the three domains of
life. Some species lack this enzyme and charge tRNA(asn)
by misacylation with Asp, followed by transamidation of
Asp to Asn [Protein synthesis, tRNA aminoacylation].
Length = 453
Score = 629 bits (1625), Expect = 0.0
Identities = 253/461 (54%), Positives = 328/461 (71%), Gaps = 23/461 (4%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + V+GWVRT R+ + F+E+NDGS L +Q V+ + Y +TTG+S+
Sbjct: 15 VGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVS 74
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
+ G VV S G Q VEL+V KI +VG+++P YP+QKK S EFLR AHLR RTNT GA
Sbjct: 75 VTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGA 134
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V RVRNAL+ A H++FQENGF W+S PI+T++DCEGAGE F
Sbjct: 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELF------------------- 175
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+ G ID+SQDFF K A+LTVSGQL ETYA ALS VYTFGPTFRAE SNTSRHL+E
Sbjct: 176 --RVSTGNIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSE 233
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
FWMIEPE+AFA+L D + A ++Y+++ +L+NC +++ F +K +I RL +
Sbjct: 234 FWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINN 293
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 386
F +++YTDAIE+L ++ K FE+ WG DLQ+EHER+L EE F PV V++YPK+IKA
Sbjct: 294 KFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFKP-PVFVTNYPKDIKA 352
Query: 387 FYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRH 446
FYM+ NDDG+TVAAMD+L P IGE+IGGS+RE+ L+ LE R+ E+ L+ D+ WYLDLR
Sbjct: 353 FYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRK 412
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
YGSVPH+GFGLGFERL+ + TG+ENIRDAIPFPRTPG++ F
Sbjct: 413 YGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation,
ribosomal structure and biogenesis].
Length = 435
Score = 548 bits (1415), Expect = 0.0
Identities = 204/482 (42%), Positives = 275/482 (57%), Gaps = 49/482 (10%)
Query: 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS 67
K+ I D+K P+ G V V GWV R + F+ + DGS +Q V+
Sbjct: 1 MMKRTYIKDIK--PHVGGQEV----TVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPK 52
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS 127
+ + K+ +T +S+ + G V S + Q EL+V KI ++G++DP YPI KK S
Sbjct: 53 NKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112
Query: 128 R-EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
E L HL RT AV ++R+++ A +FF ENGF + +PIITAS EG GE
Sbjct: 113 ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGEL 172
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+F+K A+LT S QL E A AL V
Sbjct: 173 FKV------------------------------DYFDKEAYLTQSPQLYKEALAAALERV 202
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMD 306
+T GPTFRAE SNT RHL+EFWM++PE+AFADL D M A ++Y+ + +L+ C ++++
Sbjct: 203 FTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELE 262
Query: 307 FFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT 366
F + L F +++Y +AIE+L +K FE V+WG DL +EHERYL
Sbjct: 263 FLGRDNSE-----LKRPESAPFPRITYKEAIEIL--EEKGFEK-VEWGDDLGTEHERYLG 314
Query: 367 EEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLE 425
EE F PV V++YPKEIK FYMR + D TVA+ D+L P GE+IGGSQRE + L
Sbjct: 315 EEYFKP-PVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLV 373
Query: 426 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485
R+ E L+ +SY WYLDLR YG PHAGFGLG ERLV + G++NIR+AIPFPR PG +
Sbjct: 374 ERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRL 433
Query: 486 EF 487
Sbjct: 434 YP 435
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase.
Length = 572
Score = 525 bits (1353), Expect = 0.0
Identities = 264/551 (47%), Positives = 349/551 (63%), Gaps = 76/551 (13%)
Query: 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 64
+F ++ I + P+ G G + + GWV+T R Q + F+EVNDGSC +N+Q +
Sbjct: 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVM 87
Query: 65 MTSDAEGYDQVKSGLITTGASIWIQGNV-VP--SQGSKQKVELKVNKIVLVGKSDPS-YP 120
+ D+ YD S L+ TG + + G + VP +G+KQK+EL V K++ VG DP+ YP
Sbjct: 88 V--DSSLYDL--STLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYP 143
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPII----- 175
+ K +++ EFLR HLR RTN+ AVAR+RNALA+ATH FFQE+ F++I +PII
Sbjct: 144 LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203
Query: 176 -----------------------------TASDCEGA-------GEQFCVTTLIPSSREA 199
T +D E A GE +S+E
Sbjct: 204 EGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEE 263
Query: 200 AESPV--------------------DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY 239
+ V +PK KDG ID+S+DFF + AFLTVSGQL ETY
Sbjct: 264 ITAAVAELKIAKESLAHIEERSKLKPGLPK-KDGKIDYSKDFFGRQAFLTVSGQLQVETY 322
Query: 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 299
A ALS+VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL+DDM CA AY++Y+ +++LD
Sbjct: 323 ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLD 382
Query: 300 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA---KKKFEFLVKWGCD 356
C +DM+ + G IDRL VA F +++YT+AIELL +A K+F+ V+WG D
Sbjct: 383 KCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGID 442
Query: 357 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 416
L SEHERYLTE F P+IV +YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ
Sbjct: 443 LASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQ 501
Query: 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476
REER + ++ R++E+ L + Y WYLDLR YG+V H GFGLGFER++ FATG++NIRD I
Sbjct: 502 REERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVI 561
Query: 477 PFPRTPGSVEF 487
PFPR PG +
Sbjct: 562 PFPRYPGKADL 572
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional.
Length = 586
Score = 493 bits (1270), Expect = e-171
Identities = 242/511 (47%), Positives = 322/511 (63%), Gaps = 55/511 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGA 84
+ +I V GW + +R Q F+ +NDGSC N+Q ++ E Y+++ K G+ G
Sbjct: 80 IDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGV---GC 136
Query: 85 SIWIQGNVV--PSQGS------KQKVELKVN-----KIVLVGKS-DPS-YPIQKKRVSRE 129
G ++ P Q K+ VEL + + G++ DP YP+ KK +E
Sbjct: 137 CFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKE 196
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPR+ +V R+RNALA ATH FFQ GF++I +P+IT SDCEG GE F V
Sbjct: 197 FLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTV 256
Query: 190 TTL---------IPSSR-----------------------EAAESPVDAIPKTKDG-LID 216
TTL IP ++ S + P D LID
Sbjct: 257 TTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316
Query: 217 WSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276
+ +DFF K AFLTVSGQL+ E +++ +VYTFGPTFRAENS+TSRHLAEFWMIEPE+AF
Sbjct: 317 YKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAF 376
Query: 277 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 336
ADL D+M A +Y++Y + Y+L+N +D+ +F +E G+I RL + + DF +++YT+
Sbjct: 377 ADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNV 436
Query: 337 IELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 396
I+LL FE VKWG DLQSEHER++ E+ F PVIV +YPK++KAFYM+ N+D +
Sbjct: 437 IDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKK-PVIVYNYPKDLKAFYMKLNEDQK 495
Query: 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 456
TVAAMD+LVP+IGE+IGGSQRE+ LE L+ + E KLN +SYWWY LR +GS PHAGFG
Sbjct: 496 TVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFG 555
Query: 457 LGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
LGFERL+ TGV+NI+D IPFPR PG EF
Sbjct: 556 LGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase.
Length = 633
Score = 451 bits (1161), Expect = e-153
Identities = 223/547 (40%), Positives = 324/547 (59%), Gaps = 75/547 (13%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
S+V FR K++ GG + R I + ++ SV ++ ++DGSC++++Q
Sbjct: 96 SRVPIFRSIAKVL--SGGGSTYPVREKTEIAIQ---KSAPPPPSVAYLLISDGSCVASLQ 150
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQG---NVVPSQGSKQKVELKVNKIVLVGKSDPS- 118
V+ S Q L+ TG I +G +P+QG K +EL+V KI+ +G DP
Sbjct: 151 VVVDSALAPLTQ----LMATGTCILAEGVLKLPLPAQG-KHVIELEVEKILHIGTVDPEK 205
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
YP+ KKR+ + LR +H RPRT T +V RVR+AL +ATH FFQ++GF+++ PIIT +
Sbjct: 206 YPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265
Query: 179 DCEGAGEQFCVTTLI----------------------------------------PSSRE 198
D G GE F VTTL+ S+RE
Sbjct: 266 DATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNRE 325
Query: 199 AAESPVDAIPKT-------------------KDGLIDWSQDFFEKPAFLTVSGQLNAETY 239
A + + KT K + +S+DFF +P +LTVSG+L+ E+Y
Sbjct: 326 ALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY 385
Query: 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 299
A AL NVYTFGP FRA+ +++RHLAE WM+E E+AF++L+D M CA Y +++ +++L+
Sbjct: 386 ACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLE 445
Query: 300 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLVKWGCDLQ 358
NC EDM F + I+K I RL + ++SYT+A++LL +A KKFE +WG L
Sbjct: 446 NCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALT 505
Query: 359 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQRE 418
+EH YL +E + PVI+ +YPKE+K FY+R NDDG+TVAA D++VP++G +I GSQ E
Sbjct: 506 TEHLSYLADEIYKK-PVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNE 564
Query: 419 ERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 478
ER++ L R++EL L R+ Y WYLDLR +G+V H+GF LGFE +V FATG+ ++RDAIPF
Sbjct: 565 ERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPF 624
Query: 479 PRTPGSV 485
PR+ G
Sbjct: 625 PRSWGKA 631
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II
core domain. Assignment to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure and the
presence of three characteristic sequence motifs in the
core domain. This family includes AsnRS as well as a
subgroup of AspRS. AsnRS and AspRS are homodimers,
which attach either asparagine or aspartate to the 3'OH
group of ribose of the appropriate tRNA. While archaea
lack asnRS, they possess a non-discriminating aspRS,
which can mischarge Asp-tRNA with Asn. Subsequently, a
tRNA-dependent aspartate amidotransferase converts the
bound aspartate to asparagine. The catalytic core domain
is primarily responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate.
Length = 322
Score = 422 bits (1088), Expect = e-147
Identities = 146/361 (40%), Positives = 200/361 (55%), Gaps = 41/361 (11%)
Query: 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG 184
+ E L HL RT A+ R+R+ + A +F +ENGF + +P IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 185 EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244
E F +F KPA+L S QL E AL
Sbjct: 61 ELF------------------------------KVSYFGKPAYLAQSPQLYKEMLIAALE 90
Query: 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKE 303
VY GP FRAE SNT RHL+EFWM+E E+AF D + M ++Y+ + +L+ C +
Sbjct: 91 RVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAK 150
Query: 304 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER 363
+++ N ++R F +++Y +AIELL + + E VKWG DL +EHER
Sbjct: 151 ELELVN------QLNRELLKPLEPFPRITYDEAIELLREKGVEEE--VKWGEDLSTEHER 202
Query: 364 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLE 422
L E G PV V+DYPKEIK FYM+ +DD TV + D+L+P +GE++GGSQR +
Sbjct: 203 LLGEIVKGD-PVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYD 261
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482
LE R+ E L+ +S+ WYLDLR YG PH GFGLG ERLV + G++NIR+AI FPR P
Sbjct: 262 ELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDP 321
Query: 483 G 483
Sbjct: 322 K 322
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N).
Length = 345
Score = 246 bits (630), Expect = 1e-77
Identities = 107/379 (28%), Positives = 160/379 (42%), Gaps = 56/379 (14%)
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
S E +L R A ++R+ + A +F E GF+ + +PI+T S EG
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSN 245
F L+PS F+ K A+L S QL + A
Sbjct: 61 F----LVPSK------------------------FYAKEAYLPQSPQLYKQLLMVAGFDR 92
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V+ P FR E+ T RH EF ++ E++F D +D M ++YV + +L +E
Sbjct: 93 VFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKKVLGKREELE 152
Query: 306 DFFNTWIEKGIIDRLSTVAER------DFVQLSYTDAIELLIKAKKKFEFLVK------- 352
IE R+ T AE D L + ++ + + K EF V
Sbjct: 153 LLG---IELPEFPRI-TYAEAIERYGSDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVV 208
Query: 353 ---WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRI 408
G E L ++ PV V+D+P FYM +++D D+++
Sbjct: 209 DKALGALRSELGEENLGDK-DKDNPVFVTDFPLFEHPFYMPKDEDPPGLAERFDLVLN-G 266
Query: 409 GELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQ 464
GE+ GGS R E R +EL L+ + + +YLD YG PH G GLG +RLV
Sbjct: 267 GEIGGGSIRIHDPEEQRKRFEELGLDPEEAEEKFGFYLDALKYGMPPHGGIGLGLDRLVM 326
Query: 465 FATGVENIRDAIPFPRTPG 483
TG+E+IR+ I FP+T
Sbjct: 327 LLTGLESIREVIAFPKTRK 345
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional.
Length = 437
Score = 246 bits (631), Expect = 1e-76
Identities = 136/469 (28%), Positives = 214/469 (45%), Gaps = 77/469 (16%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQ 89
+ +AGWV +R + F+ + D S + +Q V+ E ++ +K + + + +
Sbjct: 19 VTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIK--KLKRESVVSVT 74
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL------------ 137
G V + + VE+ +I ++ K++ P+ +S + A L
Sbjct: 75 GTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLD---ISGK---VLAELDTRLDNRFLDLR 128
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
RPR A+ ++R+ + A +F ENGF I +P I AS EG E F +
Sbjct: 129 RPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI-------- 177
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAE 256
D+FEK A+L S QL + V+ GP FRAE
Sbjct: 178 ----------------------DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAE 215
Query: 257 NSNTSRHLAEFWMIEPELAFADL-KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 315
NTSRHL E+ I+ E+ F D +D M L+Y+ + +NC+++++ +
Sbjct: 216 EHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP-- 273
Query: 316 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA---FGG 372
V E +++Y +AIE+L + + WG DL +E ER L E +G
Sbjct: 274 -------VPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGS 322
Query: 373 CPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431
++DYP E + FY M DD + D+L + E+ G QR R + L + E
Sbjct: 323 DFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEK 381
Query: 432 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
LN +S+ +YL+ YG PH GFGLG ERL G+ENIR+A+ FPR
Sbjct: 382 GLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPR 430
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA
synthetase. In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_arch, represents
aspartyl-tRNA synthetases from the eukaryotic cytosol
and from the Archaea. In some species, this enzyme
aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn)
is subsequently transamidated to Asn-tRNA(asn) [Protein
synthesis, tRNA aminoacylation].
Length = 428
Score = 183 bits (466), Expect = 1e-52
Identities = 129/457 (28%), Positives = 200/457 (43%), Gaps = 54/457 (11%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGASIWIQG 90
+ GWV +R + F+ + D L +Q + + K + + + ++G
Sbjct: 15 VTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTFGAV 147
V + + E+ KI ++ ++ P+ L T+ R R T A+
Sbjct: 73 IVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAI 132
Query: 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207
R+R+ + + +F E GFI + +P + AS EG E F +T
Sbjct: 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT----------------- 175
Query: 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY-ATALSNVYTFGPTFRAENSNTSRHLAE 266
+FE+ AFL S QL + A VY GP FRAE NT RHL E
Sbjct: 176 -------------YFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNE 222
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
I+ E+AF D D M + V + + C ++ +EK E
Sbjct: 223 ATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEK---------PEG 273
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 386
FV+L+Y +AIE+ + + WG DL +E E+ L EE G ++D+P EI+
Sbjct: 274 KFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEMDG--LYFITDWPTEIRP 327
Query: 387 FY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLR 445
FY M D+ + D++ R E+ G+QR + L R+ LN + + YL+
Sbjct: 328 FYTMPDEDNPEISKSFDLMY-RDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAF 386
Query: 446 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482
YG PHAG+GLG ER V F G++NIR+A+ FPR
Sbjct: 387 SYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDR 423
>gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed.
Length = 335
Score = 180 bits (459), Expect = 1e-52
Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 44/342 (12%)
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V +V++++ T +F GF+ + PII+ T P ++ PV
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISP-----------STD--PLMGLGSDLPVKQ 75
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN--SNTSRHL 264
I S DF+ +L S L+ + L ++ P FR E +T RHL
Sbjct: 76 I----------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHL 125
Query: 265 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324
EF ++ E+ ADL + M ++Y+V+ +L+ +++++FF R
Sbjct: 126 YEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFG---------RDLPHL 176
Query: 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384
+R F ++++ +A+E+L + + L + G SE E+ L+E P + D PK
Sbjct: 177 KRPFKRITHKEAVEILNEEGCRGIDLEELG----SEGEKSLSEHF--EEPFWIIDIPKGS 230
Query: 385 KAFYMRQNDDGRT--VAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWY 441
+ FY R+ D R + D+L+P GE + G +RE E + R+ E ++ + Y WY
Sbjct: 231 REFYDRE-DPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWY 289
Query: 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483
L++ G +P AGFG+G ERL ++ G+ +IR+ PFPR PG
Sbjct: 290 LEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPG 331
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 130 bits (329), Expect = 7e-33
Identities = 120/493 (24%), Positives = 208/493 (42%), Gaps = 81/493 (16%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI----- 80
+ G +++ G V T+R + F+ + +QCV+ V G++
Sbjct: 78 ELAGSEVLIRGRVHTIRGKGKSAFLVLR--QSGFTVQCVVFVSE---VTVSKGMVKYAKQ 132
Query: 81 -TTGASIWIQGNVV----PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR------- 128
+ + + ++G V P +G+ Q+VE++V KI V K+ + P + +R
Sbjct: 133 LSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEK 192
Query: 129 ------EFLRTKAHLRP-------RTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175
+ +R R RT A+ R+++ + +F GF+ I +P +
Sbjct: 193 ALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKL 252
Query: 176 TASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLN 235
A EG F L D+ +PA L S QL+
Sbjct: 253 IAGASEGGSAVF---RL---------------------------DYKGQPACLAQSPQLH 282
Query: 236 AETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYV 293
+ V+ GP FRAE+S T RHL EF ++ E+ + + + +
Sbjct: 283 KQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAI 342
Query: 294 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 353
+ + CK++++ + L ++L++ + I++L +A + + L
Sbjct: 343 FDGLNERCKKELEAIREQYPFEPLKYL-----PKTLRLTFAEGIQMLKEAGVEVDPL--- 394
Query: 354 GCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIG 409
DL +E ER L +E +G I+ YP ++ FY M DD + + D+ + R
Sbjct: 395 -GDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFI-RGE 452
Query: 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 469
E+I G+QR E LE R +E ++ + Y+D YG+ PH GFG+G ER+V G+
Sbjct: 453 EIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGL 512
Query: 470 ENIRDAIPFPRTP 482
NIR FPR P
Sbjct: 513 NNIRKTSLFPRDP 525
>gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon
recognition domain of the type found in Escherichia coli
asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis
thaliana and Saccharomyces cerevisiae mitochondrial (mt)
AsnRS. This domain is a beta-barrel domain (OB fold)
involved in binding the tRNA anticodon stem-loop. The
enzymes in this group are homodimeric class2b
aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the
specific attachment of amino acids (AAs) to their
cognate tRNAs during protein biosynthesis. This 2-step
reaction involves i) the activation of the AA by ATP in
the presence of magnesium ions, followed by ii) the
transfer of the activated AA to the terminal ribose of
tRNA. In the case of the class2b aaRSs, the activated
AA is attached to the 3'OH of the terminal ribose.
Eukaryotes contain 2 sets of aaRSs, both of which are
encoded by the nuclear genome. One set concerns with
cytoplasmic protein synthesis, whereas the other
exclusively with mitochondrial protein synthesis. S.
cerevisiae mtAsnRS can charge E.coli tRNA with
asparagines. Mutations in the gene for S. cerevisiae
mtAsnRS has been found to induce a "petite" phenotype
typical for a mutation in a nuclear gene that results in
a non-functioning mitochondrial protein synthesis
system.
Length = 82
Score = 111 bits (281), Expect = 4e-30
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVR++R ++FIE+NDGSCL N+Q V+ + + ++ ++TG+SI ++G
Sbjct: 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEIL--KLSTGSSIRVEGV 59
Query: 92 VVPSQGSKQKVELKVNKIVLVGK 114
+V S G+KQ EL+ KI ++G+
Sbjct: 60 LVKSPGAKQPFELQAEKIEVLGE 82
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II
core domain. This domain is the core catalytic domain of
class II aminoacyl-tRNA synthetases of the subgroup
containing aspartyl, lysyl, and asparaginyl tRNA
synthetases. It is primarily responsible for
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. Nearly all class II tRNA synthetases
are dimers and enzymes in this subgroup are homodimers.
These enzymes attach a specific amino acid to the 3' OH
group of ribose of the appropriate tRNA.
Length = 269
Score = 116 bits (291), Expect = 2e-29
Identities = 73/337 (21%), Positives = 119/337 (35%), Gaps = 75/337 (22%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
+VR+ + A F + GF+ + +P++ F V
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPF---------------LVKYNA 46
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
D + S F+K L V G L V+ FR E +RH EF
Sbjct: 47 LGLDYYLRISPQLFKK--RLMVGG----------LDRVFEINRNFRNE-DLRARHQPEFT 93
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M++ E+AFAD +D + ++++ R +L F + G F
Sbjct: 94 MMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFEL--EDFG----------LPF 141
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
+L+Y +A+E G P+ ++DYP E+ +
Sbjct: 142 PRLTYREALERY-------------------------------GQPLFLTDYPAEMHSPL 170
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDL 444
+D +A L E+ GS R + E +N + + +YL
Sbjct: 171 ASPHDVNPEIADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKA 230
Query: 445 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
YG PH G G+G +RL+ T IR+ I FP+
Sbjct: 231 LEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKM 267
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional.
Length = 550
Score = 102 bits (256), Expect = 3e-23
Identities = 125/508 (24%), Positives = 204/508 (40%), Gaps = 88/508 (17%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTG 83
+ V +++ V T R + + F+ + DGS + D E D + G I T
Sbjct: 75 ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFI--GQIPTE 132
Query: 84 ASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE--------F 130
+ + ++ V + S +ELKV KI V +S + P + SR+
Sbjct: 133 SIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVN 192
Query: 131 LRTKAHLR---PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
T+ + R RT GA+ R+++ + +F ++ F I SP I + EG F
Sbjct: 193 FDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 188 CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNV 246
+ ++F + A+L S QL + + V
Sbjct: 253 KL------------------------------EYFNRFAYLAQSPQLYKQMVLQGDVPRV 282
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELA---------------FADLKDDMACATAYLQ 291
+ GP FR+ENSNT RHL EF ++ E+ F + + +A T L+
Sbjct: 283 FEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHTKELK 342
Query: 292 YVVR------YILDNCKEDMDFFNTW-IEKGIID------RLSTVAERDFVQLSYTDAIE 338
V + + E M I +G+ R+ + R ++++Y IE
Sbjct: 343 AVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSR-MLRINYMHCIE 401
Query: 339 LLIKAKKKFEFLVKWGCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDD 394
LL E + D+ + +E+ L +E +G I +P + FY M DD
Sbjct: 402 LL---NTVLEEKMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDD 458
Query: 395 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAG 454
R + DM + R E+ G+QR + L R L ++ Y+D G+ PH G
Sbjct: 459 ERFTNSYDMFI-RGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGG 517
Query: 455 FGLGFERLVQFATGVENIRDAIPFPRTP 482
FG+G ER+V G+ N+R A FPR P
Sbjct: 518 FGVGLERVVMLYLGLSNVRLASLFPRDP 545
>gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon
recognition domain of class 2b aminoacyl-tRNA
synthetases (aaRSs). This domain is a beta-barrel domain
(OB fold) involved in binding the tRNA anticodon
stem-loop. Class 2b aaRSs include the homodimeric
aspartyl-, asparaginyl-, and lysyl-tRNA synthetases
(AspRS, AsnRS, and LysRS). aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation of the AA by ATP in the
presence of magnesium ions, followed by ii) the transfer
of the activated AA to the terminal ribose of tRNA. In
the case of the class2b aaRSs, the activated AA is
attached to the 3'OH of the terminal ribose. Eukaryotes
contain 2 sets of aaRSs, both of which are encoded by
the nuclear genome. One set concerns with cytoplasmic
protein synthesis, whereas the other exclusively with
mitochondrial protein synthesis. Included in this group
are archeal and archeal-like AspRSs which are
non-discriminating and can charge both tRNAAsp and
tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS
and LysU) encoded by two distinct genes, which are
differentially regulated. The cytoplasmic and the
mitochondrial isoforms of human LysRS are encoded by a
single gene. Yeast cytoplasmic and mitochondrial LysRSs
participate in mitochondrial import of cytoplasmic
tRNAlysCUU. In addition to their housekeeping role,
human LysRS may function as a signaling molecule that
activates immune cells. Tomato LysRS may participate in
a process possibly connected to conditions of
oxidative-stress conditions or heavy metal uptake. It is
known that human tRNAlys and LysRS are specifically
packaged into HIV-1 suggesting a role for LysRS in tRNA
packaging. AsnRS is immunodominant antigen of the
filarial nematode Brugia malayai and is of interest as a
target for anti-parasitic drug design. Human AsnRS has
been shown to be a pro-inflammatory chemokine which
interacts with CCR3 chemokine receptors on T cells,
immature dendritic cells and macrophages.
Length = 85
Score = 71.4 bits (176), Expect = 1e-15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ +AGWV + R + FI++ DGS +Q V+ + G ++ + T + + + G
Sbjct: 2 VTLAGWVHSRRDHGGLIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 92 VVPSQG---SKQKVELKVNKIVLVGK 114
VV + ++EL+ ++ ++ K
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLSK 85
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation,
ribosomal structure and biogenesis].
Length = 502
Score = 76.5 bits (189), Expect = 7e-15
Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 50/265 (18%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR-----YILDN 300
V+ G FR E +T H EF M+E A+AD +D M ++ + + +
Sbjct: 251 VFEIGRNFRNEGIDT-THNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTY 309
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD--AIELLIKAKKKFEFLVKWGC--- 355
+++DF + ++D L DF L + D A EL K + E WG
Sbjct: 310 GGQEIDFSKPFKRITMVDALKEYLGVDFDDL-FDDEEAKELAKKHGIEVEKYGTWGLGHL 368
Query: 356 -DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE---- 410
+ E L E P V+D+P EI +++ P + E
Sbjct: 369 LNELFEE---LVEAKLIQ-PTFVTDHPVEISPL-AKRHRSN----------PGLTERFEL 413
Query: 411 LIGGSQRE------------ERLEYLEGRLDELKLNRDSY----WWYLDLRHYGSVPHAG 454
IGG +E ++ E E +++E + D +++ YG P G
Sbjct: 414 FIGG--KEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGG 471
Query: 455 FGLGFERLVQFATGVENIRDAIPFP 479
G+G +RLV T +IRD I FP
Sbjct: 472 LGIGIDRLVMLLTNSPSIRDVILFP 496
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and
non-spirochete bacterial. This model represents the
lysyl-tRNA synthetases that are class II amino-acyl tRNA
synthetases. It includes all eukaryotic and most
bacterial examples of the enzyme, but not archaeal or
spirochete forms [Protein synthesis, tRNA
aminoacylation].
Length = 496
Score = 73.2 bits (180), Expect = 8e-14
Identities = 106/503 (21%), Positives = 179/503 (35%), Gaps = 103/503 (20%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGL 79
NE L+ + + +AG + R+ TFI + D S +Q + D E + + L
Sbjct: 46 NEELEDKNIEVSIAGRIMARRSMGKATFITLQDES--GQIQLYVNKDDLPEDFYEFDEYL 103
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS-----DPSYPI--QKKRVSREFLR 132
+ G I + G P + ++ + V ++ ++ K+ D + + Q+ R + +L
Sbjct: 104 LDLGDIIGVTGY--PFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLD 161
Query: 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ R TF VR+ + A +F + GFI + +P++
Sbjct: 162 LIVNPDSR-QTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQV--------------- 201
Query: 193 IPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY---ATAL------ 243
IP A +P F+T L+ + Y A L
Sbjct: 202 IPGGANA------------------------RP-FITHHNALDMDLYLRIAPELYLKRLI 236
Query: 244 ----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 299
VY G FR E +T H EF MIE A+AD +D M +++ + +L
Sbjct: 237 VGGFEKVYEIGRNFRNEGVDT-THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLG 295
Query: 300 NCK-----EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354
K ++DF + +++ + + E KK V
Sbjct: 296 TTKITYGELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVA-E 354
Query: 355 CDLQSEHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR 407
L H + E F P ++ YP EI ++N L
Sbjct: 355 KSLTLGH---ILNELFEQFLEHTLIQPTFITHYPAEISPL-AKRNPSNPEFTDRFELFIA 410
Query: 408 IGELIGG--------SQREERLEYLEGRL---DELKLNRDSYWWYLDLRHYGSVPHAGFG 456
E+ QRE + + + DE + + + L+ YG P G G
Sbjct: 411 GKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALE---YGMPPTGGLG 467
Query: 457 LGFERLVQFATGVENIRDAIPFP 479
+G +RLV T ++IRD I FP
Sbjct: 468 IGIDRLVMLLTDSKSIRDVILFP 490
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core
domain. Class II assignment is based upon its structure
and the presence of three characteristic sequence
motifs. AspRS is a homodimer, which attaches a specific
amino acid to the 3' OH group of ribose of the
appropriate tRNA. The catalytic core domain is primarily
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. AspRS in this family
differ from those found in the AsxRS family by a GAD
insert in the core domain.
Length = 280
Score = 66.8 bits (164), Expect = 3e-12
Identities = 88/346 (25%), Positives = 138/346 (39%), Gaps = 82/346 (23%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAA--ESPVDA 206
R+R+ + A F E GF+ I +PI+T S EGA + F V + + + A +SP
Sbjct: 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSP--- 57
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
Q F + L VSG + Y + FR E+ R E
Sbjct: 58 ------------QLFKQ---LLMVSG---FDRY-------FQIARCFRDEDLRADRQ-PE 91
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
F I+ E++F D +D M+ L+YV + + +
Sbjct: 92 FTQIDIEMSFVDQEDIMSLIEGLLKYVFK----------EVLGVELTT------------ 129
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCD-----LQSEHERYL-TEEAFGGCPVIVSDY 380
F +++Y +A+E + F+FL W D E R + F +
Sbjct: 130 PFPRMTYAEAME-----RYGFKFL--WIVDFPLFEWDEEEGRLVSAHHPF------TAPK 176
Query: 381 PKEIKAFYMRQNDDGRTVA-AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 439
+++ D A A D+++ + EL GGS R + E + L L+ +
Sbjct: 177 EEDLDLLE---KDPEDARAQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAE 232
Query: 440 ----WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
+ L+ YG+ PH G LG +RLV TG E+IRD I FP+T
Sbjct: 233 EKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKT 278
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core
domain. Class II LysRS is a dimer which attaches a
lysine to the 3' OH group of ribose of the appropriate
tRNA. Its assignment to class II aaRS is based upon its
structure and the presence of three characteristic
sequence motifs in the core domain. It is found in
eukaryotes as well as some prokaryotes and archaea.
However, LysRS belongs to class I aaRS's in some
prokaryotes and archaea. The catalytic core domain is
primarily responsible for the ATP-dependent formation of
the enzyme bound aminoacyl-adenylate.
Length = 329
Score = 59.1 bits (144), Expect = 1e-09
Identities = 67/269 (24%), Positives = 93/269 (34%), Gaps = 57/269 (21%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED- 304
VY G FR E + H EF MIE A+AD D M +V+ I K +
Sbjct: 79 VYEIGRNFRNEGIDL-THNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEY 137
Query: 305 ----MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
+DF + ++D L DF +L EL K L+K +
Sbjct: 138 GGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELA----KLLAKLIKEKIEKPRT 193
Query: 361 HERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 413
+ L ++ F P + D+P EI R + L R I
Sbjct: 194 LGKLL-DKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPG-------LTERFELFIC 245
Query: 414 GS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYGSV 450
G QRE E + + +DE D ++ YG
Sbjct: 246 GKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDE-----D----FVTALEYGMP 296
Query: 451 PHAGFGLGFERLVQFATGVENIRDAIPFP 479
P G G+G +RLV T +IRD I FP
Sbjct: 297 PTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
Length = 491
Score = 57.0 bits (139), Expect = 1e-08
Identities = 68/275 (24%), Positives = 102/275 (37%), Gaps = 73/275 (26%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
VY G FR E +T RH EF M+E A+AD D M ++++ + +L K
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTY 301
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
++DF + ++D + DF ++ +A L + + E G
Sbjct: 302 QGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLG------ 355
Query: 361 HERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE- 410
L E F P ++DYP EI A +++ + P + E
Sbjct: 356 ---KLINELFEEFVEPKLIQPTFITDYPVEISPLA---KRHRE----------DPGLTER 399
Query: 411 ---LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDL 444
IGG QRE +E + +DE D +L
Sbjct: 400 FELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDE-----D----FLRA 450
Query: 445 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
YG P G G+G +RLV T +IRD I FP
Sbjct: 451 LEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type.
Asparate--tRNA ligases in this family may be
discriminating (6.1.1.12) or nondiscriminating
(6.1.1.23). In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_bact, represents
aspartyl-tRNA synthetases from the Bacteria and from
mitochondria. In some species, this enzyme aminoacylates
tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently
transamidated to Asn-tRNA(asn). This model generates
very low scores for the archaeal type of aspS and for
asnS; scores between the trusted and noise cutoffs
represent fragmentary sequences [Protein synthesis, tRNA
aminoacylation].
Length = 583
Score = 57.1 bits (138), Expect = 1e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 410 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 465
EL GGS R E + + L ++ R+ + + L+ YG+ PHAGF LG +RL+
Sbjct: 478 ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMML 537
Query: 466 ATGVENIRDAIPFPRT 481
TG +NIRD I FP+T
Sbjct: 538 LTGTDNIRDVIAFPKT 553
Score = 49.7 bits (119), Expect = 2e-06
Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 40/276 (14%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
+G + +AGWV R + FI++ D S + +Q V DA+ K + +
Sbjct: 14 LGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQ 69
Query: 88 IQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLRP 139
++G V +G+ ++E+ I L+ KS I +K + E +R K +L
Sbjct: 70 VKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
R ++R+ + A F + GF+ I +P++T S EGA + L+PS
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-----YLVPSR--- 181
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ K + + S F++ L VSG + Y Y FR E+
Sbjct: 182 -------VHKGEFYALPQSPQLFKQ--LLMVSG---VDRY-------YQIARCFRDEDLR 222
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295
R EF I+ E++F +D M + +V
Sbjct: 223 ADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFL 257
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 585
Score = 54.5 bits (132), Expect = 7e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
YG+ PH G G +RLV TG E+IRD I FP+T
Sbjct: 522 YGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKT 556
Score = 46.4 bits (111), Expect = 3e-05
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGAS 85
VG + ++GWV R + FI++ D + +Q V + E ++ +
Sbjct: 14 VGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFV 69
Query: 86 IWIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTK-AH 136
I + G V +G+ ++E+ +I ++ S + I+ + + E +R K +
Sbjct: 70 IQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRY 129
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
L R ++R+ + A F + GF+ I +PI+T S EGA
Sbjct: 130 LDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated.
Length = 588
Score = 51.6 bits (125), Expect = 7e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
YG+ PH G G +RLV G ++IRD I FP+T
Sbjct: 524 YGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKT 558
Score = 42.7 bits (102), Expect = 3e-04
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R + FI++ D + +Q V DAE ++ +S + + I
Sbjct: 16 VGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQ 71
Query: 88 IQGNVVP-SQGSKQK------VELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAH--- 136
+ G V +G+ +E+ +++ ++ KS +PI + E LR K +
Sbjct: 72 VTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLK-YRYL 130
Query: 137 -LR-PR-TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
LR P ++R+ + A F +NGF+ I +PI+T S EGA
Sbjct: 131 DLRRPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed.
Length = 505
Score = 50.8 bits (121), Expect = 8e-07
Identities = 106/495 (21%), Positives = 184/495 (37%), Gaps = 90/495 (18%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 58 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 115
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 116 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 168
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++
Sbjct: 169 QRYLDLIANDKSR-QTF----VVRSKILAAIRQFMVARGFMEVETPMMQ----------- 212
Query: 188 CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVY 247
+IP A D + + + + K L V G V+
Sbjct: 213 ----VIPGGASARPFITHHNALDLDMYLRIAPELYLKR--LVVGG----------FERVF 256
Query: 248 TFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----- 302
FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 257 EINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGE 315
Query: 303 EDMDF---FNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 359
DF F + I + E D L DA + L ++ WG
Sbjct: 316 HVFDFGKPFEKLTMREAIKKYR--PETDMADLDNFDAAKALAESIG-ITVEKSWGLG--- 369
Query: 360 EHERYLTE------EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 413
R +TE EA P +++YP E+ R + + + + G IG
Sbjct: 370 ---RIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIG--GREIG 424
Query: 414 G-----SQREERLEYLEGRLDELKLNRDSYWWY----LDLRHYGSVPHAGFGLGFERLVQ 464
+ E++ E + +++ D +Y + YG P AG G+G +R++
Sbjct: 425 NGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIM 484
Query: 465 FATGVENIRDAIPFP 479
T IRD I FP
Sbjct: 485 LFTNSHTIRDVILFP 499
>gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal,
anticodon recognition domain of the type found in human
and Saccharomyces cerevisiae cytoplasmic
asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai
AsnRs and, in various putative bacterial AsnRSs. This
domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop. The enzymes in
this group are homodimeric class2b aminoacyl-tRNA
synthetases (aaRSs). aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation of the AA by ATP in the
presence of magnesium ions, followed by ii) the transfer
of the activated AA to the terminal ribose of tRNA. In
the case of the class2b aaRSs, the activated AA is
attached to the 3'OH of the terminal ribose. Eukaryotes
contain 2 sets of aaRSs, both of which are encoded by
the nuclear genome. One set concerns with cytoplasmic
synthesis, whereas the other exclusively with
mitochondrial protein synthesis. AsnRS is
immunodominant antigen of the filarial nematode B.
malayai and of interest as a target for anti-parasitic
drug design. Human AsnRS has been shown to be a
pro-inflammatory chemokine which interacts with CCR3
chemokine receptors on T cells, immature dendritic cells
and macrophages.
Length = 84
Score = 46.1 bits (110), Expect = 1e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWV LR+Q + F+ + DG+ +QCV++ L T +S+ + G
Sbjct: 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSL-TQESSVEVTGE 58
Query: 92 VVPSQGSKQK---VELKVNKIVLVGK 114
V +KQ EL+V+ + ++G+
Sbjct: 59 VKEDPRAKQAPGGYELQVDYLEIIGE 84
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 46.0 bits (109), Expect = 1e-05
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 20/130 (15%)
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+R+ + +F E GF + +PI+ P +A P D +P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVER---------------EPLLEKAGHEPKDLLP- 44
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTS-RHLAEFW 268
+D + +P +L + GP FR E R + EF
Sbjct: 45 VGAEN---EEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFT 101
Query: 269 MIEPELAFAD 278
+E E+ D
Sbjct: 102 QLEGEVFGED 111
Score = 32.1 bits (73), Expect = 0.50
Identities = 26/107 (24%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 356 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 415
+L E L V V P E G + D R E+ G
Sbjct: 120 ELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAG---PGFEIEV-DHPEGRGLEIGSGG 175
Query: 416 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 462
R++ D Y+ L Y P GFGLG ERL
Sbjct: 176 YRQDEQARAA----------DLYFLDEALE-YRYPPTIGFGLGLERL 211
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase.
Length = 652
Score = 47.1 bits (112), Expect = 1e-05
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 400 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGF 455
A DM V E+ GGS R R + + L+ + L+ + + L+ G+ PH G
Sbjct: 537 AYDM-VYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGI 595
Query: 456 GLGFERLVQFATGVENIRDAIPFPRT 481
G +RLV G ++IRD I FP+T
Sbjct: 596 AYGLDRLVMLLAGAKSIRDVIAFPKT 621
Score = 39.8 bits (93), Expect = 0.003
Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 49/271 (18%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R +TF++V D + + + + E + + +
Sbjct: 71 VGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANR--LRNEYVVA 128
Query: 88 IQGNVVPSQGSKQ--------KVELKVNKI-VL--VGKSDPSYPI----QKKRVSREFLR 132
++G V S+ + VE+ + +L V KS P + + ++K +E +R
Sbjct: 129 VEG-TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP-FLVTTADEQKDSIKEEVR 186
Query: 133 TK-AHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVT 190
+ L R A R+R+ + ++ ++ +GF+ I +PI++ S EGA +
Sbjct: 187 LRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDY---- 242
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFG 250
L+PS + A+P+ S F++ L VSG + Y Y
Sbjct: 243 -LVPSRVQPGT--FYALPQ--------SPQLFKQ--MLMVSG---FDRY-------YQIA 279
Query: 251 PTFRAENSNTSRHLAEFWMIEPELAFADLKD 281
FR E+ R EF ++ ELAF L+D
Sbjct: 280 RCFRDEDLRADRQ-PEFTQLDMELAFTPLED 309
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 45.8 bits (109), Expect = 4e-05
Identities = 76/267 (28%), Positives = 102/267 (38%), Gaps = 52/267 (19%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
VY G FR E +T RH EF E A+AD D M + +V+ + + K
Sbjct: 300 VYEIGRQFRNEGIST-RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKY 358
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIKAKKKFEFLVKWGCDLQS 359
++DF + +I + DF L +A LI A +KF+ C
Sbjct: 359 HGIEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDV----KCPPPQ 414
Query: 360 EHERYLTE--EAFG--GC--PVIVSDYPKEIK--AFYMRQNDD----------GRTVA-A 400
R L E E F P V D+P E+ A R GR +A A
Sbjct: 415 TTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELANA 474
Query: 401 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR--DSYWWYLD------LRHYGSVPH 452
L + QRE R E +++K + D LD L YG P
Sbjct: 475 FSELTDPV------DQRE-RFE------EQVKQHNAGDDEAMALDEDFCTALE-YGLPPT 520
Query: 453 AGFGLGFERLVQFATGVENIRDAIPFP 479
G+GLG +RLV T +IRD I FP
Sbjct: 521 GGWGLGIDRLVMLLTDSASIRDVIAFP 547
>gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon
recognition domain of the type found in Saccharomyces
cerevisiae and human cytoplasmic aspartyl-tRNA
synthetase (AspRS). This domain is a beta-barrel domain
(OB fold) involved in binding the tRNA anticodon
stem-loop. The enzymes in this group are homodimeric
class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs
catalyze the specific attachment of amino acids (AAs) to
their cognate tRNAs during protein biosynthesis. This
2-step reaction involves i) the activation of the AA by
ATP in the presence of magnesium ions, followed by ii)
the transfer of the activated AA to the terminal ribose
of tRNA. In the case of the class2b aaRSs, the
activated AA is attached to the 3'OH of the terminal
ribose. Eukaryotes contain 2 sets of aaRSs, both of
which are encoded by the nuclear genome. One set
concerns with cytoplasmic protein synthesis, whereas the
other exclusively with mitochondrial protein synthesis.
Length = 102
Score = 38.3 bits (90), Expect = 0.001
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 32 IVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEG-----YDQVKSGLITTGAS 85
+++ V T RAQ + + F+ + +Q V+ + AEG S ++ +
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQG--YTIQGVLAASAEGVSKQMVKWAGS--LSKESI 57
Query: 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQ 122
+ ++G V + ++Q VEL + KI +V ++ P Q
Sbjct: 58 VDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99
>gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon
recognition domain of the type found in Pyrococcus
horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS).
This domain is a beta-barrel domain (OB fold) involved
in binding the tRNA anticodon stem-loop. The archeal
enzymes in this group are homodimeric class2b
aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the
specific attachment of amino acids (AAs) to their
cognate tRNAs during protein biosynthesis. This 2-step
reaction involves i) the activation of the AA by ATP in
the presence of magnesium ions, followed by ii) the
transfer of the activated AA to the terminal ribose of
tRNA. In the case of the class2b aaRSs, the activated
AA is attached to the 3'OH of the terminal ribose.
Length = 103
Score = 36.3 bits (84), Expect = 0.005
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQ 89
+ +AGWV R FI + D + + +Q V + D E Y + K + +S+ ++
Sbjct: 2 VTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVE 57
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL 137
G V + E+ K+ ++ + +PI + S EFL HL
Sbjct: 58 GAVKADPRAPGGAEVHGEKLEIIQNVEF-FPITED-ASDEFLLDVRHL 103
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
synthetase/aspartyl/glutamyl-tRNA amidotransferase
subunit C; Provisional.
Length = 706
Score = 37.3 bits (86), Expect = 0.018
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 410 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 465
EL GGS R + L L+ D + ++L + + PH G LG +R+V
Sbjct: 499 ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSM 558
Query: 466 ATGVENIRDAIPFPR 480
+IR+ I FP+
Sbjct: 559 ILQTPSIREVIAFPK 573
Score = 36.5 bits (84), Expect = 0.034
Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 28/206 (13%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSG 78
+ LD G + +AGWV R + FI + D + +Q V + +A Y+ S
Sbjct: 11 HLSLDDTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS- 67
Query: 79 LITTGASIWIQGNV---VPSQGSKQ----KVELKVNKIVLVGKSDP-SYPIQKK------ 124
+ + +QG V + + +E+ V ++ ++ S+ + I K
Sbjct: 68 -LRAEFCVALQGEVQKRLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGA 126
Query: 125 ------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
V+ + +L R R+ + F GF+ I +PI+T S
Sbjct: 127 GSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKS 186
Query: 179 DCEGAGEQFCVTTLIPSSREA-AESP 203
EGA + + + P A +SP
Sbjct: 187 TPEGARDYLVPSRIHPKEFYALPQSP 212
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 37.3 bits (86), Expect = 0.019
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 448 GSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
G P AG+G+G +R + T NIRD I FP
Sbjct: 529 GLPPTAGWGMGIDRALMLLTNSSNIRDGIIFP 560
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 36.9 bits (86), Expect = 0.029
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
Y P G G+G +RLV TG +IR+ +PFP
Sbjct: 1057 YAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFP 1088
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 35.4 bits (81), Expect = 0.080
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
YG P G GLG +R+ F T I+D I FP
Sbjct: 547 YGLPPTGGLGLGIDRITMFLTNKNCIKDVILFP 579
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA
synthetase (class II) [Translation, ribosomal structure
and biogenesis].
Length = 322
Score = 33.1 bits (76), Expect = 0.29
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 451 PHAGFGLGFERLVQFATGVENIRDAIPFPR 480
P +G LGF+RLV A G E+I D I FP
Sbjct: 290 PCSGVALGFDRLVMLALGAESIDDVIAFPV 319
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F).
Other tRNA synthetase sub-families are too dissimilar
to be included. This family includes only
phenylalanyl-tRNA synthetases. This is the core
catalytic domain.
Length = 245
Score = 32.5 bits (75), Expect = 0.37
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 444 LRHYG---SVPHAGFGLGFERLVQFATGVENIRD 474
L G P FGLG ERL G+++IRD
Sbjct: 200 LEAVGIDEEYPGFAFGLGVERLAMLKYGIDDIRD 233
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative
bacteria have a protein closely homologous to the
C-terminal region of lysyl-tRNA synthetase (LysS).
Multiple sequence alignment of these proteins with the
homologous regions of collected LysS proteins shows that
these proteins form a distinct set rather than just
similar truncations of LysS. The protein is termed GenX
after its designation in E. coli. Interestingly, genX
often is located near a homolog of
lysine-2,3-aminomutase. Its function is unknown [Unknown
function, General].
Length = 290
Score = 31.4 bits (72), Expect = 0.85
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 453 AGFGLGFERLVQFATGVENIRDAIP 477
+G LG +RL+ A G ++I D +
Sbjct: 266 SGVALGVDRLLMLALGADSIDDVLA 290
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 30.7 bits (70), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 455 FGLGFERLVQFATGVENIRD 474
FGLG ERL G+ +IRD
Sbjct: 305 FGLGLERLAMLKYGIPDIRD 324
>gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal,
anticodon recognition domain of the type found in the
homodimeric non-discriminating (ND) Pyrococcus
kodakaraensis aspartyl-tRNA synthetase (AspRS). This
domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop. P. kodakaraensis
AspRS is a class 2b aaRS. aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation the AA by ATP in the presence
of magnesium ions, followed by ii) the transfer of the
activated AA to the terminal ribose of tRNA. In the
case of the class2b aaRSs, the activated AA is attached
to the 3'OH of the terminal ribose. P. kodakaraensis
ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of
the enzymes in this group may be discriminating, based
on the presence of homologs of asparaginyl-tRNA
synthetase (AsnRS) in their completed genomes.
Length = 108
Score = 28.8 bits (65), Expect = 2.3
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS-IWIQG 90
+ VAGWV +R + F+ + D + +Q + K+ + S I + G
Sbjct: 15 VTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRKLSRESVISVTG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
V + VE+ +I ++ ++ P+
Sbjct: 73 TVKAEPKAPNGVEIIPEEIEVLSEAKTPLPL 103
>gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS)
alpha chain catalytic core domain. PheRS belongs to
class II aminoacyl-tRNA synthetases (aaRS) based upon
its structure and the presence of three characteristic
sequence motifs. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. While class II aaRSs generally
aminoacylate the 3'-OH ribose of the appropriate tRNA,
PheRS is an exception in that it attaches the amino acid
at the 2'-OH group, like class I aaRSs. PheRS is an
alpha-2/ beta-2 tetramer.
Length = 218
Score = 29.4 bits (67), Expect = 3.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 455 FGLGFERLVQFATGVENIRD 474
FG+G ERL G+ +IR
Sbjct: 192 FGIGLERLAMLKYGIPDIRL 211
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 29.0 bits (66), Expect = 6.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 450 VPHAGFGLGFERLVQFATGVENIRD 474
VP +GLG ERL G+++IRD
Sbjct: 452 VPVLAWGLGIERLAMLRLGLDDIRD 476
>gnl|CDD|238567 cd01147, HemV-2, Metal binding protein HemV-2. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 262
Score = 28.5 bits (64), Expect = 7.7
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQR-EERLEYLEGRLDE 430
G PV+V D ++ + +G+++G +R EE + ++E L +
Sbjct: 98 GIPVVVLDGGD--------------SLEDTPEQIRLLGKVLGKEERAEELISFIESILAD 143
Query: 431 LK 432
++
Sbjct: 144 VE 145
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 28.7 bits (65), Expect = 9.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 312 IEKGIIDRLSTVAERDFVQLSY-TDAIELLIKAKKKFEFLVKWGCD 356
+E + D++ T+A++ Y D +EL KAKKK K G
Sbjct: 424 LEDPLEDKIETIAKK-----IYGADGVELSPKAKKKLARYEKQGFG 464
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,188,201
Number of extensions: 2468591
Number of successful extensions: 2225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2153
Number of HSP's successfully gapped: 79
Length of query: 487
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 386
Effective length of database: 6,457,848
Effective search space: 2492729328
Effective search space used: 2492729328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)