RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011364
(487 letters)
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 216 bits (551), Expect = 2e-67
Identities = 92/348 (26%), Positives = 144/348 (41%), Gaps = 50/348 (14%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
++ R A +V+ AL ++ F I +P + + EG F V
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------ 56
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRA 255
D+FEK A+L S QL + VY P +R
Sbjct: 57 ------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRM 92
Query: 256 ENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEK 314
E +TSRHL E+ ++ E+ F ++D M A L ++ L+ +++
Sbjct: 93 EEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS 152
Query: 315 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFG 371
+D +L++ +A +L K E G DL E ER L E E +G
Sbjct: 153 ---------FPQDIPRLTHAEAKRIL-----KEELGYPVGQDLSEEAERLLGEYAKERWG 198
Query: 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431
+ V+ YP+ ++ FY +DG T + L+ R E+ G QR R E L L
Sbjct: 199 SDWLFVTRYPRSVRPFYTYPEEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESLKAK 256
Query: 432 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
++ +++ YL++ YG PH GF +G ERL Q G+ N+R A FP
Sbjct: 257 GMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 211 bits (537), Expect = 2e-65
Identities = 70/356 (19%), Positives = 117/356 (32%), Gaps = 77/356 (21%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGE------ 55
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-NAETYATALSNVYTFG 250
G+ + + LT S L A L ++
Sbjct: 56 ---------------------GMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 94
Query: 251 PTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 308
P R E+ + RH EF ++ E+ A ++D M + + R + +
Sbjct: 95 PNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKT 154
Query: 309 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE 368
+ + FE+ SE +
Sbjct: 155 KRF---------------------------------EVFEY---------SEVLEEFGSD 172
Query: 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 428
+ + I + + DG +L GE+ G +RE E + ++
Sbjct: 173 EKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKI 232
Query: 429 DELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483
+ LN DS+ YL++ G + P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 233 RKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 201 bits (511), Expect = 6e-61
Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 38/355 (10%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
+ RT T A+ R++ + ++ F + +P + + EG F V
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------ 85
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFR 254
+F+ A+L S Q N + A VY GP FR
Sbjct: 86 ------------------------TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFR 121
Query: 255 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQY-VVRYILDNCKEDMDFFNTWIE 313
AENSNT RH+ EF ++ E+AF + ++ + L + + +++
Sbjct: 122 AENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYP 181
Query: 314 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373
++ + V+L+Y + IE+L A K+ + + + L + +
Sbjct: 182 ---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGK-LVRDKYDTD 237
Query: 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 433
I+ +P EI+ FY + + R E++ G+QR L+ R+ L
Sbjct: 238 FYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGL 297
Query: 434 NRD--SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486
+ + Y D YG PHAG G+G ER+V F ++NIR A FPR P +
Sbjct: 298 SPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 352
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 191 bits (486), Expect = 3e-57
Identities = 78/374 (20%), Positives = 130/374 (34%), Gaps = 64/374 (17%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
EGA + S+ K L S QL +
Sbjct: 63 TPEGARDYLV----------------------------PSRVHKGKFYALPQSPQLFKQL 94
Query: 239 YATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 297
+ Y FR E+ R EF I+ E +F A ++++
Sbjct: 95 LMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLW--- 150
Query: 298 LDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 357
L+ D+ F R + + + ++ W D
Sbjct: 151 LEVKGVDLGDFPVMTFAEAERRYGSDKP----------------DLRDESKWAPLWVIDF 194
Query: 358 ---QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 414
+ + E LT PK++ A ++ + A DM++ E+ GG
Sbjct: 195 PMFEDDGEGGLTAMHH------PFTSPKDMTAAELKAAPENAVANAYDMVING-YEVGGG 247
Query: 415 SQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 470
S R + + L +N R+ + + LD YG+ PHAG G +RL TG +
Sbjct: 248 SVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTD 307
Query: 471 NIRDAIPFPRTPGS 484
NIRD I FP+T +
Sbjct: 308 NIRDVIAFPKTTAA 321
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 187 bits (476), Expect = 5e-56
Identities = 103/372 (27%), Positives = 160/372 (43%), Gaps = 42/372 (11%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-N 235
A+ EG E F +FE+ AFL S QL
Sbjct: 63 ATATEGGTELFP------------------------------MKYFEEDAFLAESPQLYK 92
Query: 236 AETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI-EPELAFADLKDDMACATAYLQYVV 294
A+ L VY P FRAE NT+RHL E W I D ++ M+ + + +
Sbjct: 93 EIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAI 152
Query: 295 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354
Y+ ++ +++D N +E+ + F ++SY A+E+L K+ +
Sbjct: 153 NYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKEIPWGEDID 203
Query: 355 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 414
+ + +Y+ E + YP E K FY+ + D+ + L R E+ G
Sbjct: 204 TEGERLLGKYMMEN-ENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSG 262
Query: 415 SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 474
QRE R + L ++ E LN +S+ +YL YG PH GFGLG ERL++ + NIR+
Sbjct: 263 GQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIRE 322
Query: 475 AIPFPRTPGSVE 486
I FPR +
Sbjct: 323 VILFPRDRRRLT 334
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 185 bits (471), Expect = 4e-55
Identities = 60/356 (16%), Positives = 108/356 (30%), Gaps = 46/356 (12%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
+ VR+ + A +F GF+ + +P++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH-------- 66
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ + +L ++ +L +
Sbjct: 67 --------------------NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 106
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
+ RH EF M+E +A+AD D + + + + + +L K K
Sbjct: 107 SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKL 166
Query: 320 LSTVA------ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGG 372
A E D L DA + L + WG + +E + E
Sbjct: 167 TMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGLGRIVTEIFDEVAEAHL-I 224
Query: 373 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432
P +++YP E+ R + + + + E+ G E R E
Sbjct: 225 QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQV 283
Query: 433 LNRDS--------YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
+ + Y+ YG P AG G+G +R++ T IRD I FP
Sbjct: 284 NAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 177 bits (450), Expect = 7e-52
Identities = 72/379 (18%), Positives = 123/379 (32%), Gaps = 63/379 (16%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229
+ +P +T S EGA + + L
Sbjct: 62 VETPFLTKSTPEGARDFLV----------------------------PYRHEPGLFYALP 93
Query: 230 VSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288
S QL + A L + FR E+ +F ++ E++F +++D +
Sbjct: 94 QSPQLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNER 152
Query: 289 YLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 348
+ +V R L ++ E Y L + +F
Sbjct: 153 LMAHVFREALGVELPLPFPRLSYEEAMER---------------YGSDKPDLRREGFRFL 197
Query: 349 FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 408
++V + E E T S +P++ + + D GR A LV
Sbjct: 198 WVVDFPLLEWDEEEEAWTYM----HHPFTSPHPED---LPLLEKDPGRVRALAYDLVLNG 250
Query: 409 GELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQ 464
E+ GGS R L + + + ++L+ YG+ PH G G +RL+
Sbjct: 251 VEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLA 310
Query: 465 FATGVENIRDAIPFPRTPG 483
TG +IR+ I FP+
Sbjct: 311 LMTGSPSIREVIAFPKNKE 329
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 61.0 bits (148), Expect = 2e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 56.6 bits (136), Expect = 8e-11
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 52.4 bits (125), Expect = 5e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 40.0 bits (93), Expect = 6e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 35.8 bits (81), Expect = 0.010
Identities = 45/335 (13%), Positives = 86/335 (25%), Gaps = 49/335 (14%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESP 203
+ + G+ I PI+ + + E +
Sbjct: 12 LPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP-----------LFKRAIGEVTDVV 60
Query: 204 VDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRH 263
+ +D D E A +G + Y ++ GP FR E R+
Sbjct: 61 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHERPQKGRY 119
Query: 264 LAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIE---------K 314
+ D ++ + +E
Sbjct: 120 RQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALV 179
Query: 315 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 374
+++ + D + YT+ + +L + + L+ L + E G C
Sbjct: 180 AFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCK 239
Query: 375 VIVSDYPKEIKAFYMRQNDD---GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431
++ S + + D + + G + G GR D L
Sbjct: 240 LLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAG-----------GRYDGL 288
Query: 432 KLNRDSYWWYLDLRHYG--SVPHAGFGLGFERLVQ 464
+ G + P GF +G ERLV
Sbjct: 289 ------------VEQLGGRATPAVGFAMGLERLVL 311
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 28.3 bits (63), Expect = 0.40
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 342 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 392
+ ++LVKW L + + IV P+++K F R+N
Sbjct: 22 DGTSQLQYLVKW-RRLNYDEATWENATD------IVKLAPEQVKHFQNREN 65
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 27.8 bits (62), Expect = 0.50
Identities = 5/45 (11%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 341 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385
+ + ++W + S + + E GC +++++ + +
Sbjct: 20 DRNGAVKLYRIRW-LNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 29.7 bits (66), Expect = 0.71
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 455 FGLGFERLVQFATGVENIRD 474
FGLG ERL G+ +IR
Sbjct: 231 FGLGVERLAMLRYGIPDIRY 250
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 29.6 bits (65), Expect = 0.78
Identities = 48/336 (14%), Positives = 85/336 (25%), Gaps = 49/336 (14%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESP 203
FG R+ + K + G + + +PI + A +
Sbjct: 12 FGKELRMHQRIVATARKVLEAAGALELVTPIFEETQ-----------VFEKGVGAATDIV 60
Query: 204 VDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRH 263
+ +D E A + + + ++ GP FRAE R+
Sbjct: 61 RKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRY 120
Query: 264 LAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 323
+ L + D + + L K + ++ +
Sbjct: 121 RQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLRE 180
Query: 324 AERDFVQLSYTDAIELL---------IKAKKKFEFLVKWGCDLQSEH--ERYLTEEAFGG 372
+ D+ E L K+++ L + G + E
Sbjct: 181 VLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVE 240
Query: 373 CPVIVSDYPKEIKAFYMRQND--DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 430
+ P E++ +R D + L GG GR D
Sbjct: 241 RHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGG-----------GRYDG 289
Query: 431 LKLNRDSYWWYLDLRHYG--SVPHAGFGLGFERLVQ 464
L G VP GF G ER+
Sbjct: 290 L------------SELLGGPRVPGVGFAFGVERVAL 313
>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 132
Score = 28.4 bits (62), Expect = 1.1
Identities = 11/90 (12%), Positives = 23/90 (25%)
Query: 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSRE 198
TN G+ + + A+ N +S + + +
Sbjct: 41 SVTNPDGSGIKGKEAVGAFFDTHIAANRLTVTCEETFPSSSPDEIAHILVLHSEFDGGFT 100
Query: 199 AAESPVDAIPKTKDGLIDWSQDFFEKPAFL 228
+ V K GLI + ++
Sbjct: 101 SEVRGVFTYRVNKAGLITNMRGYWNLDMMT 130
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 26.7 bits (59), Expect = 1.2
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 341 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 383
K K E+LV+W SE + + E+ C + D+ +
Sbjct: 17 KNKKGKTEYLVRW-KGYDSEDDTWEPEQHLVNCEEYIHDFNRR 58
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.2 bits (60), Expect = 1.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 318 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 352
DR+ V D S+ A+E + KA F+V+
Sbjct: 59 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 93
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 28.9 bits (63), Expect = 1.6
Identities = 39/330 (11%), Positives = 79/330 (23%), Gaps = 37/330 (11%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPII--TASDCEGAGEQFCVTTLIPSSREAAE 201
+ V + + + GF I P + +GE+ T + E
Sbjct: 14 YPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGRE 73
Query: 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA----LSNVYTFGPTFRAEN 257
+ + S+ ++P ++ A +
Sbjct: 74 VTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSP 133
Query: 258 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 317
+ +A I L D+ + + ++ ++ + + + K
Sbjct: 134 EADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHKISR 193
Query: 318 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 377
+ + I L + + + + E R A
Sbjct: 194 EEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEEIARM---AAVEDLLASY 250
Query: 378 SDYPKEIKAFYMRQND--DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 435
+R G A D + ++GG GR D L
Sbjct: 251 GVKNVRYDFSIVRGLSYYTGIVFEAYDRS-GQFRAILGG-----------GRYDNL---- 294
Query: 436 DSYWWYLDLRHYG--SVPHAGFGLGFERLV 463
SVP GFG+G +
Sbjct: 295 --------ASLMSGESVPAVGFGMGDAVIS 316
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity
protein par6 (Par-6B) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 98
Score = 26.8 bits (59), Expect = 2.1
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 318 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 352
D + V + + ++++ VK
Sbjct: 61 DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK 95
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 26.4 bits (58), Expect = 2.2
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 334 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373
+ L K+ +EFL+KW D H + T E+ G
Sbjct: 27 EKTVPDLNNCKENYEFLIKW-TDESHLHNTWETYESIGQV 65
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
6803 [TaxId: 1148]}
Length = 249
Score = 28.1 bits (62), Expect = 2.3
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 223 EKPAFLT--VSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L 279
E A++ + G + E + L+N+Y A + + PEL D L
Sbjct: 19 ENTAYMKCFLKGIVEREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKL 78
Query: 280 KDDMA 284
+D+
Sbjct: 79 AEDLT 83
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit
(RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 26.7 bits (59), Expect = 4.0
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 31 MIVVAGWVRTLRAQSSVTFIEVNDGS--CLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
+ + G +R + +++D + + Q V T D + V + + +
Sbjct: 30 QVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTV----VPPETYVKV 85
Query: 89 QGNVVPSQGSKQKVELKVNKI 109
G++ Q K V K+ +
Sbjct: 86 AGHLRSFQNKKSLVAFKIMPL 106
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium
diphtheriae [TaxId: 1717]}
Length = 207
Score = 27.0 bits (59), Expect = 4.2
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 231 SGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 284
G+L + + F +++P L A+ L D+
Sbjct: 28 KGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLD 82
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 27.3 bits (59), Expect = 4.4
Identities = 41/347 (11%), Positives = 89/347 (25%), Gaps = 69/347 (19%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESP 203
++ + + + I +PI ++D ++ +
Sbjct: 12 LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTD-----------LFARGVGDSTDVV 60
Query: 204 VDAIPKTKDGLIDWSQDFFEKP-AFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSR 262
+ KD E A + + + +Y GP FR E R
Sbjct: 61 QKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR 120
Query: 263 HLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 322
+ +F + + A + +V +I + + + + +++
Sbjct: 121 Y-RQFNQFG----VEAIGAENPSVDAEVLAMVMHIYQSFG----LKHLKLVINSVGDMAS 171
Query: 323 VAERDFVQLSYTDAIELLIKAKKKFEFLVKW--GCDLQSEHERYLTEEAFGGCPVIVSDY 380
E + + + + + + + D + + ++ + A + +
Sbjct: 172 RKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEES 231
Query: 381 PKEIKAFYMRQNDDGRTVAAMDMLVPR---------------------IGELIGGSQREE 419
+ +D G LV I L GG
Sbjct: 232 KAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGG----- 286
Query: 420 RLEYLEGRLDELKLNRDSYWWYLDLRHYG--SVPHAGFGLGFERLVQ 464
GR + L L S GF L ERL+
Sbjct: 287 ------GRYNGL------------LELLDGPSETGIGFALSIERLLL 315
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp.
[TaxId: 1143]}
Length = 222
Score = 26.6 bits (58), Expect = 7.1
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 231 SGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 284
G + +Y + N+Y E + H + PEL L+ D+
Sbjct: 30 KGVVEKNSYRKLVGNLYFVYSAMEEEMAKFKDHPILSHIYFPELNRKQSLEQDLQ 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,867,032
Number of extensions: 88783
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 34
Length of query: 487
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,185,626
Effective search space: 471879148
Effective search space used: 471879148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)