Query 011365
Match_columns 487
No_of_seqs 567 out of 1674
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 06:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.1E-37 1.8E-41 303.2 25.8 365 55-479 71-475 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.9E-34 9.8E-39 280.4 20.9 343 54-467 77-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 8.9E-32 3.1E-36 261.7 29.4 328 42-461 54-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.5E-29 8.6E-34 248.1 25.5 372 54-473 69-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 9.8E-29 3.4E-33 235.1 9.9 302 54-451 50-361 (375)
6 2xut_A Proton/peptide symporte 99.9 6.1E-25 2.1E-29 218.5 20.8 122 54-175 69-198 (524)
7 2cfq_A Lactose permease; trans 99.9 1.1E-25 3.7E-30 216.9 14.0 341 54-475 58-408 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.6 5.2E-15 1.8E-19 143.9 18.1 180 281-471 27-211 (451)
9 3o7q_A L-fucose-proton symport 99.6 1.6E-14 5.6E-19 139.8 16.8 153 282-444 26-182 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.6 3.9E-14 1.3E-18 139.3 16.7 182 283-468 14-198 (491)
11 2gfp_A EMRD, multidrug resista 99.5 2.3E-14 8E-19 135.7 11.2 175 289-473 7-181 (375)
12 2xut_A Proton/peptide symporte 99.5 4.8E-13 1.6E-17 132.6 14.6 179 283-465 13-197 (524)
13 4gc0_A D-xylose-proton symport 99.1 1.2E-09 3.9E-14 107.3 15.6 113 330-442 58-188 (491)
14 2cfq_A Lactose permease; trans 98.9 3.4E-09 1.2E-13 101.5 9.2 125 56-180 276-405 (417)
15 2g9p_A Antimicrobial peptide l 42.0 15 0.00053 17.5 1.6 14 346-359 2-15 (26)
16 3mkt_A Multi antimicrobial ext 28.6 3.5E+02 0.012 24.8 20.4 27 112-138 147-173 (460)
17 2dw3_A Intrinsic membrane prot 20.0 2E+02 0.0068 19.0 4.9 27 449-475 36-62 (77)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.1e-37 Score=303.18 Aligned_cols=365 Identities=20% Similarity=0.260 Sum_probs=264.4
Q ss_pred HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHh------------------hchhHHHHHHHHHHHhhhccch-HHHHHH
Q 011365 55 SFSLFGRL--LLSFRKGFLITAIVTSAAGLLSA------------------FAPNYYLLLFFRCLVGLGLGGG-PVLASW 113 (487)
Q Consensus 55 ~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~-~~~~~~ 113 (487)
++.+.|.+ |+|||+++.++.+++.++.++++ +++|+++++++|+++|+|.|.. +....+
T Consensus 71 G~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~ 150 (491)
T 4gc0_A 71 GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMY 150 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455665 99999999999999999999988 4789999999999999999999 888899
Q ss_pred HHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc--------hhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhc
Q 011365 114 FLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP--------RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLK 185 (487)
Q Consensus 114 i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~--------~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~ 185 (487)
+.|+.|+++|++..++.+.+..+|.++++.++..+.. ..+||..+.+..++.++.++..+++||+|+|+..+
T Consensus 151 i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~ 230 (491)
T 4gc0_A 151 IAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR 230 (491)
T ss_dssp HHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT
T ss_pred HHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc
Confidence 9999999999999999999999999999988877643 34799999999999998888899999999999999
Q ss_pred CChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccc
Q 011365 186 GRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSN 265 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (487)
++.+++++.+++....+... .+..+. +...+++ ++
T Consensus 231 ~~~~~a~~~l~~~~~~~~~~-----------~~~~~~--------------------~~~~~~~-------------~~- 265 (491)
T 4gc0_A 231 GKQEQAEGILRKIMGNTLAT-----------QAVQEI--------------------KHSLDHG-------------RK- 265 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-----------HHHHHH--------------------HHHHHHH-------------HH-
T ss_pred CchhHHHHhHHHhcCCchhH-----------HHHHHH--------------------HHHHHhh-------------hh-
Confidence 99999988887765432110 000000 0000000 00
Q ss_pred cchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHH
Q 011365 266 MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLL 345 (487)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (487)
.......++.+ +.........+......+.+..+.+.+.+..+ .+.........+.++...++.+
T Consensus 266 ---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 266 ---TGGRLLMFGVG--VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG----------ASTDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp ---HTTHHHHSCCT--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHhccc--HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcC----------CCccchhhHHHHHHHHHHHHHH
Confidence 00111122221 22222333333344444555566666654433 3333445566677788889999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc---cC-CcchHHHHHHHH-HHHHHhhhHHHhhhcccccCCcchhHHHHH
Q 011365 346 LAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF---QQ-PKGLTTGLLFGA-RICITVTFTVVYVYAPEIYPTSVRTTGVGV 420 (487)
Q Consensus 346 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 420 (487)
+.+++.||+|||+.+..+...+.++++.+.. .. +........++. .....+..++.+.+.+|.+|++.|+++.|+
T Consensus 331 ~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~ 410 (491)
T 4gc0_A 331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI 410 (491)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHH
T ss_pred HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence 9999999999999998888877776665542 12 222222222222 223334557888999999999999999999
Q ss_pred HHHHHhHhHhHHHHHHHHHHhh------ccchhHHHHHHHHHHHHHHheeeccccCCCCCCCCCC
Q 011365 421 ASSIGRIGGMVCPLVAVALVHG------CHQTAALILFELVILLSGISVLLFPFETTGRGLSDSL 479 (487)
Q Consensus 421 ~~~~~~~g~~~~~~i~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
.+.++++++++++.+.+.+.+. .+....+++++++++++.++.+++.||||++++||.+
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 9999999999999888766542 3455678888888889888888899999999988644
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.9e-34 Score=280.36 Aligned_cols=343 Identities=16% Similarity=0.186 Sum_probs=257.6
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAF----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW 126 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~ 126 (487)
+..++.|.+ |+|||++++++.++.+++.+++++ +++++.++++|++.|++.+.. +...+++.|++|+++|+++
T Consensus 77 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 156 (451)
T 1pw4_A 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 156 (451)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHH
Confidence 335556666 999999999999999999999999 999999999999999999988 8888999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhchhh-hHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 127 MVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 127 ~~~~~~~~~lG~~i~~~~~~~l~~~~~-w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
+++...+.++|.+++|.+++++.+..+ ||+.|++.+++.++. ++..+++||+|+....+++.+..
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 223 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK------------- 223 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-------------
Confidence 999999999999999999999888888 999999998888776 45567788877632111100000
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
++.+. +.+ ++ .+++........+++++++. +
T Consensus 224 --------~~~~~-----------------------~~~----~~-----------~~~~~~~~~~~~~~~~~~~~---~ 254 (451)
T 1pw4_A 224 --------NDYPD-----------------------DYN----EK-----------AEQELTAKQIFMQYVLPNKL---L 254 (451)
T ss_dssp --------CC---------------------------------------------------CCTHHHHHHTSSCHH---H
T ss_pred --------ccccc-----------------------cch----hh-----------hhcccccccchHHHHHcCHH---H
Confidence 00000 000 00 00000000012455666533 3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh--hhhHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMSS 362 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~ 362 (487)
+...+..+.....++....+.|.+.++. .+.+....+.......++.+++.++.+++.||+ ++|+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEV---------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTB---------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 4444555555666667777888887552 126666667888888999999999999999999 99988877
Q ss_pred HHHHHH-HHHHhHhccC--CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhH-hHhHHHHHHHH
Q 011365 363 MFFCCC-IFLVPLLFQQ--PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRI-GGMVCPLVAVA 438 (487)
Q Consensus 363 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~i~g~ 438 (487)
+..+.. ++.+.+.+.. +.+......++.+++.+...+....+..|.+|++.|++++|+.+.+.++ |..++|.+.|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665 5555555442 4455566667778888888888899999999999999999999999999 99999999999
Q ss_pred HHhhccchhHHHHHHHHHHHHHHheeecc
Q 011365 439 LVHGCHQTAALILFELVILLSGISVLLFP 467 (487)
Q Consensus 439 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
+.+..|+...+++.+++.+++.++.++..
T Consensus 406 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 406 TVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777777666655543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=8.9e-32 Score=261.67 Aligned_cols=328 Identities=14% Similarity=0.080 Sum_probs=246.2
Q ss_pred hcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHhhhccc
Q 011365 42 LNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLS---AFAPNYYLLLFFRCLVGLGLGG 106 (487)
Q Consensus 42 ~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~ 106 (487)
++++.+..+.++ +..++.|.+ |+|||++++++.++.+++.+++ .++++++.++++|++.|++.+.
T Consensus 54 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 133 (438)
T 3o7q_A 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGC 133 (438)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHH
Confidence 355555555544 334556666 9999999999999999999999 8899999999999999999999
Q ss_pred h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhh-chhh-------------------------hHHHHH
Q 011365 107 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-PRLG-------------------------WRWLLG 159 (487)
Q Consensus 107 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~-~~~~-------------------------w~~~f~ 159 (487)
. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+. +..+ ||+.|+
T Consensus 134 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 213 (438)
T 3o7q_A 134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM 213 (438)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH
Confidence 8 888899999999999999999999999999999999999987 4443 999998
Q ss_pred HhHHHHHHHHHHHHhc--CCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcc
Q 011365 160 LSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 237 (487)
Q Consensus 160 ~~~~~~~i~~~~~~~l--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (487)
+.+++.++..+..++. ||+++.. ++.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~------------------------------------------------ 242 (438)
T 3o7q_A 214 IIVAIVLLVALLIMLTKFPALQSDN---HSDA------------------------------------------------ 242 (438)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTTTC---CCCS------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCcccccc---cccc------------------------------------------------
Confidence 8877776665444443 3332200 0000
Q ss_pred cccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hccccccc
Q 011365 238 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL-NNGQNKCV 316 (487)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 316 (487)
++.....+++++++++..+.. .+..+......+....+.|.+ .++.
T Consensus 243 --------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---- 289 (438)
T 3o7q_A 243 --------------------------KQGSFSASLSRLARIRHWRWA---VLAQFCYVGAQTACWSYLIRYAVEEI---- 289 (438)
T ss_dssp --------------------------STTSHHHHHHHHTTCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred --------------------------cccchhhhHHHHHhChHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence 000011166677776544433 333344444555666677777 5443
Q ss_pred cccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHh
Q 011365 317 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (487)
.+.+....+....+..++.++++++.+++.||++||+.+..+.++.+++.+++.+.++.+ .....++.+++.+.
T Consensus 290 -----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 290 -----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSI 363 (438)
T ss_dssp -----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHTT
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHH
Confidence 125666667888888999999999999999999999999998888888877777665543 34445777888888
Q ss_pred hhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHH
Q 011365 397 TFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALILFELVILLSGI 461 (487)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~ 461 (487)
..+..+++..|.+|++ ++++.++.. ...+|+.++|.+.|++.|..| +...+++.+++.++..+
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8999999999999977 888888877 778999999999999999998 77676665554444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.5e-29 Score=248.09 Aligned_cols=372 Identities=11% Similarity=-0.016 Sum_probs=232.5
Q ss_pred hHHHHHHHH--H-hhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCC--chhHH
Q 011365 54 FSFSLFGRL--L-LSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN--RGFWM 127 (487)
Q Consensus 54 ~~~~~~G~~--r-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~--r~~~~ 127 (487)
++.++.|.+ | +|||+++.++.++.+++.+++++++|++.++++|++.|++.+.. +...+++.|++|+++ |+.++
T Consensus 69 ~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 148 (491)
T 4aps_A 69 LSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF 148 (491)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeee
Confidence 445566766 9 89999999999999999999999999999999999999999998 888899999999988 77788
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhc-CCCch----hhhhcCChHHHHHHHHH-----
Q 011365 128 VIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT-PESPR----YLCLKGRTAEARHVLEK----- 197 (487)
Q Consensus 128 ~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l-~e~p~----~~~~~~~~~~~~~~~~~----- 197 (487)
++.+.+.++|..++|.+++.+.+..|||+.|++.++..++.++...+. |+..+ ....+.+.++.++..+.
T Consensus 149 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 228 (491)
T 4aps_A 149 SIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV 228 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence 889999999999999999999998999999999887777665444332 22111 00011112222221111
Q ss_pred --------HHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchh
Q 011365 198 --------IAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGI 269 (487)
Q Consensus 198 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (487)
.....+.. +. +......... ........ .....+. .
T Consensus 229 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~-------------------~~~~~~~~---------~~~~~~~-~- 272 (491)
T 4aps_A 229 AGFIAIIVVMNLVGWN-SL-----PAYINLLTIV-------------------AIAIPVFY---------FAWMISS-V- 272 (491)
T ss_dssp HHHHHHHHHHHHHSSC-CT-----THHHHHHHHH-------------------HHHHHHHH---------HHHHC-----
T ss_pred HHHHHHHHHHHhccCc-cc-----ccchhhhhHH-------------------HHHHHHHH---------HHHHhhc-c-
Confidence 00000000 00 0000000000 00000000 0000000 0
Q ss_pred hHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHH
Q 011365 270 TALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAA 349 (487)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 349 (487)
...... ++.....+..+...+.....+.....+.+.+..+.. +.+....+.......++.+++.++.++
T Consensus 273 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (491)
T 4aps_A 273 -KVTSTE-HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERV---------DSSWFPVSWFQSLNPLFIMLYTPFFAW 341 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC---------CCSSSCSGGGTTHHHHHHHHHHHHHHH
T ss_pred -cccHHH-HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh---------ccCccCHHHHhccchHHHHHHHHHHHH
Confidence 000000 000011222233333333444444445555543321 133344567777888888889999999
Q ss_pred HHhhhhhhHHHH-----HHHHHHHHHHHhHhcc---------CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchh
Q 011365 350 MVDRLGRKLSMS-----SMFFCCCIFLVPLLFQ---------QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRT 415 (487)
Q Consensus 350 l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (487)
+.||++||+... .+..+.+++.+++... .+.+......++.+++.+...+..+.++.|.+|++.|+
T Consensus 342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 999999886543 6666666666555442 24455566677788888888899999999999999999
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCCCC
Q 011365 416 TGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 416 ~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
++.|+.+...++|..++|.+.+.+.+. ++...+..++++.+++.++.++..++.+++
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877664 556667777777777666666665554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=9.8e-29 Score=235.05 Aligned_cols=302 Identities=14% Similarity=0.067 Sum_probs=223.8
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
+..++.|.+ |+|||+++.++.++.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.
T Consensus 50 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (375)
T 2gfp_A 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLL 129 (375)
T ss_dssp HHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHH
Confidence 445556766 999999999999999999999999999999999999999999988 88889999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCC
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG 209 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (487)
+.+.++|.+++|.+++++.+..+||..|++.++..++..+ ...++||+++...++++
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 187 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR---------------------- 187 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCC----------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccccc----------------------
Confidence 9999999999999999999989999999998888777654 45566776542100000
Q ss_pred CCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH
Q 011365 210 NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL 289 (487)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (487)
..++++++++++. ++...+
T Consensus 188 ----------------------------------------------------------~~~~~~~~~~~~~---~~~~~~ 206 (375)
T 2gfp_A 188 ----------------------------------------------------------LLTSYKTLFGNSG---FNCYLL 206 (375)
T ss_dssp ----------------------------------------------------------TTTCSTHHHHHHH---HHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHhcCcc---hHHHHH
Confidence 0002233344432 333334
Q ss_pred HHHHHHHHHHhhhhhhhhhhcc-ccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH-H
Q 011365 290 VFFGNAFSYYGLVLLTTELNNG-QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC-C 367 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~ 367 (487)
..+......+....+.|.+.++ .+ .+....+.......++.+++.++.+++.||.+++. ..+..+ .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~ 274 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLG----------LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCL 274 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHH----------HHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4444455555666666766644 22 55555677788888888999999999999998732 222222 2
Q ss_pred HHHHHh--Hhc--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc
Q 011365 368 CIFLVP--LLF--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 368 ~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
..+... ... ..+.+......++.+++.+...+...++..|.+| ++|+++.|+.+...++|..++|.+.|.+.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 275 LAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222221 111 1234445566677788888888999999999998 78999999999999999999999999998866
Q ss_pred cchhHHHH
Q 011365 444 HQTAALIL 451 (487)
Q Consensus 444 g~~~~~~~ 451 (487)
++...++.
T Consensus 354 ~~~~~~~~ 361 (375)
T 2gfp_A 354 QGSLGLLM 361 (375)
T ss_dssp HHHHHHHH
T ss_pred cccHHHHH
Confidence 55444333
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=6.1e-25 Score=218.47 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=106.8
Q ss_pred hHHHHHHHH--Hh-hhhHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHH
Q 011365 54 FSFSLFGRL--LL-SFRKGFLITAIVTSAAGLLSAFAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMV 128 (487)
Q Consensus 54 ~~~~~~G~~--r~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~ 128 (487)
++.++.|.+ |+ |||+++.++.++.+++.+++++++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+
T Consensus 69 ~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 69 FFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp HTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 334556666 99 999999999999999999999999 9999999999999999998 888899999999999987666
Q ss_pred H---HHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhc
Q 011365 129 I---FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT 175 (487)
Q Consensus 129 ~---~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l 175 (487)
. ...+.++|.+++|.+++.+.+..+||..|++.+++.++..+...+.
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 9999999999999999999888899999999888877765554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=1.1e-25 Score=216.86 Aligned_cols=341 Identities=14% Similarity=0.067 Sum_probs=210.7
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHH---HHHhhchhHH-HHHHHHHHHhhhccch-HHHHHHHHhhcCC--CCch
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAG---LLSAFAPNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPA--PNRG 124 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~--~~r~ 124 (487)
++.++.|.+ |+|||++++++..+.+++. ....+++... .++..+++.|++.+.. +...+.+.++.++ ++|+
T Consensus 58 i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T 2cfq_A 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 446667777 9999999999888775532 2223333221 2345566666665544 3333333333332 3567
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 125 FWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 125 ~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
...+......++|..++|.+++++.+ .+||..|++.+++.++..+..++.+|+|+. +.+.++ .+
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~ 201 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVAN------------AV 201 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS------------SS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---cccccc------------cc
Confidence 77788888889999999999999876 589999998877755554444444433310 000000 00
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
+ + +.++....+++++++++..+..
T Consensus 202 ~-------------------------~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 225 (417)
T 2cfq_A 202 G-------------------------A-------------------------------NHSAFSLKLALELFRQPKLWFL 225 (417)
T ss_dssp S-------------------------S-------------------------------CCCCCCHHHHHHHTTCHHHHHH
T ss_pred c-------------------------c-------------------------------ccccccHHHHHHHhcCCchhhH
Confidence 0 0 0000011145566665444433
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 364 (487)
... .+.....++....+.|.+..+... ..+.+....+....+..++.+++.++.+++.||+|||+.+..+.
T Consensus 226 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~ 296 (417)
T 2cfq_A 226 SLY---VIGVSCTYDVFDQQFANFFTSFFA------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG 296 (417)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHTSS------SHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHh------ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 322 222222223333334544321100 00011222245556666778889999999999999999988888
Q ss_pred HHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHH-HHHHhHhHhHHHHHHHHHHhhc
Q 011365 365 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVA-SSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
.+.++..+.+.+.++.+...+..++.+++.+...+..+.++.|.+|++.|++++++. +...++|+.++|.+.|++.+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 297 TIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 887777666665555554445555556666666677788999999999999999994 7888899999999999999988
Q ss_pred cchhHHHHHHHHHHHHHHheeeccccCCCCCC
Q 011365 444 HQTAALILFELVILLSGISVLLFPFETTGRGL 475 (487)
Q Consensus 444 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
|+...+.+.+++.+++.++.++..||+++.++
T Consensus 377 g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 377 GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 87777777777777776666666666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.64 E-value=5.2e-15 Score=143.85 Aligned_cols=180 Identities=14% Similarity=0.045 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
++......+..+......+......|.+.++ . .+..+.++..+...++..++.++.|+++||+|||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l 95 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ----------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS----------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH
Confidence 3444555555566666656666667776632 2 4455568888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhc----cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLF----QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
..+.++.+++.++..+ .++.+.+.+..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 96 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888 788888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-chhHHHHHHHHHHHHHHheeeccccCC
Q 011365 437 VALVHGCH-QTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 437 g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
+++.+..| |...+++.+++.++..++.++..||++
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 99999888 998888888777776666555555543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.60 E-value=1.6e-14 Score=139.75 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 361 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 361 (487)
+.........+...+.........|.+.++.+ .+..+.++..+...++..++.++.|+++||+|||+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~ 95 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFT----------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGII 95 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----------CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHH
Confidence 44455555566666666666667777766555 67777788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH---hccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHH
Q 011365 362 SMFFCCCIFLVPL---LFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVA 438 (487)
Q Consensus 362 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 438 (487)
.+.++.+++.++. ...++.+.+.+..++.|++.+...+...+++.|.+|+++|++++++.+....+|..++|.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 96 TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887 6778888888889999999999999999999999999999999999999999999999999999
Q ss_pred HH-hhcc
Q 011365 439 LV-HGCH 444 (487)
Q Consensus 439 l~-~~~g 444 (487)
+. +..+
T Consensus 176 l~~~~~~ 182 (438)
T 3o7q_A 176 LILSNVP 182 (438)
T ss_dssp HHHTSSC
T ss_pred HHhcccc
Confidence 88 5544
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.57 E-value=3.9e-14 Score=139.31 Aligned_cols=182 Identities=13% Similarity=0.046 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh-hhhhHHHH
Q 011365 283 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSMS 361 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~ 361 (487)
..+......+...+.++....+.+.+..+.- ...+.+.+..+.++..+...++..++.++.|+++|| +|||+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLI----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 3444555566666666666666666554310 000123666677888999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcc--hhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 362 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSV--RTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
.+.++.+++.++..+.++.+...+..++.|++.+...+...+++.|.+|+++ |+.++++.+....+|..++|.+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888888888899999999999999999999999988 77888889999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHheeeccc
Q 011365 440 VHGCHQTAALILFELVILLSGISVLLFPF 468 (487)
Q Consensus 440 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
.+..||...+++.++..+++.++..+..+
T Consensus 170 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999998888877666665555444433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.54 E-value=2.3e-14 Score=135.66 Aligned_cols=175 Identities=9% Similarity=-0.017 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011365 289 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCC 368 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 368 (487)
...+.............|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..+..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 7 LLVAVGQMAQTIYIPAIADMARDLN----------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS----------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3334444444445555666665544 666667888889999999999999999999999999999999998
Q ss_pred HHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhH
Q 011365 369 IFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAA 448 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 448 (487)
++.+...+.++.+......++.|++.+...+...+++.|.+|+++|++++++.+....+|..++|.+.+++.+..+|...
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 156 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHH
Confidence 88888887777777788888899999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHheeeccccCCCC
Q 011365 449 LILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
+++.+++.++..+...+..||++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHCcccCCC
Confidence 8888877777766566666665443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.46 E-value=4.8e-13 Score=132.65 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccc-cccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh-hhhHHH
Q 011365 283 STLLLWLVFFGNAFSYYGLVLLTTELNNGQ-NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSM 360 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~ 360 (487)
.++...+..+...+.++....+.+.+..+. +.. .+.+.+..+.+...+...++..++.++.|+++||+ |||+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLS----IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC----CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344455556666666666666666655321 100 00014556668888899999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhHhccC-CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHH---HHHHHhHhHhHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQ-PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGV---ASSIGRIGGMVCPLVA 436 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~i~ 436 (487)
..+.++.+++.+++.+.. +.+...+..++.|++.+...+...+++.|.+|+++|+++.+. .+...++|..++|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888888777 777777788888999999999999999999999999776666 8888999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHheee
Q 011365 437 VALVHGCHQTAALILFELVILLSGISVLL 465 (487)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 465 (487)
+.+.+..||...+++.+++.++..++..+
T Consensus 169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999889888888777766665554433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.10 E-value=1.2e-09 Score=107.27 Aligned_cols=113 Identities=15% Similarity=0.013 Sum_probs=98.2
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc------------------cCCcchHHHHHHHHH
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF------------------QQPKGLTTGLLFGAR 391 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 391 (487)
++..+...++.++|.++.|+++||+|||+.+.++.++..++.++..+ .++.+.+++.-++.|
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 56677788899999999999999999999999999888887776553 455667788889999
Q ss_pred HHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 392 ICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
++.++..+....++.|..|+++|+...++.+.....|..+++.+...+...
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 999999999999999999999999999999999999998888887766543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.89 E-value=3.4e-09 Score=101.50 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=102.4
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHH-HH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI-FQ 131 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~-~~ 131 (487)
..+.|.+ |+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+.. +....++.|.+|++.|+.+.+. .+
T Consensus 276 ~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 355 (417)
T 2cfq_A 276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355 (417)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 3444555 999999999999988888888888888888888888888887666 6667899999999999999998 47
Q ss_pred HHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHH-HhcCCCch
Q 011365 132 TFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPESPR 180 (487)
Q Consensus 132 ~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~-~~l~e~p~ 180 (487)
....+|..++|.+++++.+..|++..|.+.+++.++..+.. ...||.++
T Consensus 356 ~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 356 FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp TTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 88889999999999999888899999998888887775543 44565443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=41.97 E-value=15 Score=17.49 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=11.2
Q ss_pred HHHHHHhhhhhhHH
Q 011365 346 LAAAMVDRLGRKLS 359 (487)
Q Consensus 346 ~~g~l~dr~g~r~~ 359 (487)
+.|.++.++||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999854
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=28.58 E-value=3.5e+02 Score=24.84 Aligned_cols=27 Identities=4% Similarity=-0.181 Sum_probs=14.5
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHHhH
Q 011365 112 SWFLEFIPAPNRGFWMVIFQTFWTVGT 138 (487)
Q Consensus 112 ~~i~~~~~~~~r~~~~~~~~~~~~lG~ 138 (487)
..........+|.+..........+-.
T Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (460)
T 3mkt_A 147 QALRSFTDGMSLTKPAMVIGFIGLLLN 173 (460)
T ss_dssp HHHTTTTCTTSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 344555556666666655555444433
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=20.03 E-value=2e+02 Score=18.98 Aligned_cols=27 Identities=7% Similarity=-0.186 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHheeeccccCCCCCC
Q 011365 449 LILFELVILLSGISVLLFPFETTGRGL 475 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
+++...+.+++.-++-.+.||+.+...
T Consensus 36 ~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 36 VFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred HHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 333333333333344445577655443
Done!