Query 011367
Match_columns 487
No_of_seqs 303 out of 2497
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 00:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 5E-110 1E-114 784.5 49.2 483 1-487 181-663 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 7.3E-86 1.6E-90 705.4 59.3 466 1-467 149-616 (653)
3 PRK13411 molecular chaperone D 100.0 1.1E-83 2.4E-88 687.8 57.8 460 1-469 142-605 (653)
4 KOG0101 Molecular chaperones H 100.0 2.7E-84 5.9E-89 657.4 43.2 463 1-466 152-615 (620)
5 PTZ00186 heat shock 70 kDa pre 100.0 1.9E-82 4.1E-87 673.4 57.8 457 1-469 169-629 (657)
6 PLN03184 chloroplast Hsp70; Pr 100.0 2.4E-82 5.1E-87 678.0 58.8 461 1-474 181-645 (673)
7 PRK13410 molecular chaperone D 100.0 2.2E-82 4.7E-87 676.0 55.4 458 1-465 144-607 (668)
8 PTZ00400 DnaK-type molecular c 100.0 4E-82 8.6E-87 676.1 57.4 454 1-467 183-640 (663)
9 PRK00290 dnaK molecular chaper 100.0 2.4E-81 5.1E-86 670.6 59.7 455 1-468 142-600 (627)
10 CHL00094 dnaK heat shock prote 100.0 5E-80 1.1E-84 658.4 57.7 452 1-465 144-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 6.4E-80 1.4E-84 657.6 56.7 452 1-464 139-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 3.5E-78 7.7E-83 640.2 58.1 449 1-466 138-586 (599)
13 PRK05183 hscA chaperone protei 100.0 7.9E-77 1.7E-81 631.1 56.8 445 1-466 158-602 (616)
14 KOG0102 Molecular chaperones m 100.0 5.6E-78 1.2E-82 587.3 36.0 459 1-469 169-631 (640)
15 PRK01433 hscA chaperone protei 100.0 8.7E-75 1.9E-79 610.1 54.1 423 1-458 150-572 (595)
16 PF00012 HSP70: Hsp70 protein; 100.0 8E-74 1.7E-78 615.9 52.2 455 1-465 144-602 (602)
17 COG0443 DnaK Molecular chapero 100.0 1E-72 2.2E-77 591.0 47.7 450 1-465 129-578 (579)
18 KOG0103 Molecular chaperones H 100.0 1.5E-67 3.3E-72 529.1 42.5 448 1-457 146-640 (727)
19 KOG0104 Molecular chaperones G 100.0 1.2E-59 2.6E-64 473.1 38.3 455 1-466 167-738 (902)
20 PRK11678 putative chaperone; P 100.0 1.2E-37 2.7E-42 317.6 26.8 223 1-231 158-447 (450)
21 PRK13928 rod shape-determining 100.0 4.7E-31 1E-35 262.9 23.6 212 1-232 104-324 (336)
22 PRK13927 rod shape-determining 100.0 6.5E-29 1.4E-33 247.8 22.0 211 1-231 105-324 (334)
23 PRK13929 rod-share determining 100.0 1.6E-28 3.5E-33 244.0 22.7 209 1-229 107-324 (335)
24 TIGR00904 mreB cell shape dete 100.0 1.7E-27 3.8E-32 237.1 22.6 211 1-231 107-327 (333)
25 PRK13930 rod shape-determining 100.0 6.6E-27 1.4E-31 233.6 21.9 211 1-231 109-328 (335)
26 TIGR02529 EutJ ethanolamine ut 99.9 9.8E-26 2.1E-30 212.6 17.1 169 1-227 70-238 (239)
27 PRK15080 ethanolamine utilizat 99.9 1.1E-23 2.5E-28 202.1 18.2 170 2-229 98-267 (267)
28 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 9.3E-24 2E-28 205.4 15.5 206 3-230 104-320 (326)
29 TIGR01174 ftsA cell division p 99.9 5.7E-22 1.2E-26 200.4 16.1 193 7-228 159-371 (371)
30 COG1077 MreB Actin-like ATPase 99.9 4.8E-21 1E-25 179.5 16.9 209 4-232 113-332 (342)
31 PRK09472 ftsA cell division pr 99.9 1.2E-20 2.6E-25 193.0 18.1 197 5-230 166-387 (420)
32 COG0849 ftsA Cell division ATP 99.7 1.2E-16 2.6E-21 159.6 15.8 196 9-232 168-381 (418)
33 COG4820 EutJ Ethanolamine util 99.4 9.1E-13 2E-17 115.1 7.1 159 13-229 114-272 (277)
34 PRK13917 plasmid segregation p 99.3 2.9E-11 6.2E-16 120.5 15.6 178 22-234 155-339 (344)
35 TIGR01175 pilM type IV pilus a 99.2 3.3E-10 7.1E-15 113.9 17.7 178 6-229 143-347 (348)
36 cd00012 ACTIN Actin; An ubiqui 99.2 6E-11 1.3E-15 120.3 10.6 209 2-231 105-347 (371)
37 PF11104 PilM_2: Type IV pilus 99.1 5.6E-10 1.2E-14 111.6 12.3 175 9-229 139-339 (340)
38 TIGR03739 PRTRC_D PRTRC system 99.1 3E-09 6.5E-14 105.3 16.5 192 5-229 115-318 (320)
39 smart00268 ACTIN Actin. ACTIN 99.1 4E-10 8.7E-15 114.3 9.1 205 3-231 106-347 (373)
40 PF06406 StbA: StbA protein; 98.9 4.5E-09 9.9E-14 103.8 9.9 174 21-226 141-316 (318)
41 PTZ00280 Actin-related protein 98.8 8.4E-08 1.8E-12 98.5 15.3 192 2-206 112-336 (414)
42 COG4972 PilM Tfp pilus assembl 98.6 1E-06 2.2E-11 83.8 15.4 169 10-225 153-328 (354)
43 PF00022 Actin: Actin; InterP 98.6 7.6E-08 1.6E-12 98.4 8.0 216 2-232 104-368 (393)
44 TIGR00241 CoA_E_activ CoA-subs 98.6 1E-06 2.2E-11 84.1 14.8 189 5-228 35-248 (248)
45 PTZ00281 actin; Provisional 98.5 9.2E-07 2E-11 89.6 10.9 206 2-231 111-350 (376)
46 PTZ00004 actin-2; Provisional 98.4 1.8E-06 4E-11 87.5 12.1 206 2-231 111-352 (378)
47 PTZ00452 actin; Provisional 98.4 3.8E-06 8.3E-11 85.0 13.9 205 2-230 110-348 (375)
48 PTZ00466 actin-like protein; P 98.3 6.6E-06 1.4E-10 83.4 12.9 205 2-230 116-353 (380)
49 PF08841 DDR: Diol dehydratase 98.3 6.7E-06 1.4E-10 76.4 10.8 189 16-228 106-328 (332)
50 COG1924 Activator of 2-hydroxy 97.9 0.00014 3.1E-09 70.7 11.6 196 6-231 171-390 (396)
51 PF07520 SrfB: Virulence facto 97.9 0.00031 6.6E-09 76.8 15.3 86 143-233 729-836 (1002)
52 TIGR02261 benz_CoA_red_D benzo 97.9 0.00036 7.8E-09 66.0 13.7 197 6-229 43-262 (262)
53 TIGR03286 methan_mark_15 putat 97.8 0.00036 7.7E-09 69.7 13.8 71 155-230 331-402 (404)
54 TIGR03192 benz_CoA_bzdQ benzoy 97.8 0.0006 1.3E-08 65.4 14.8 71 156-231 217-288 (293)
55 PRK10719 eutA reactivating fac 97.8 2.7E-05 5.8E-10 78.7 4.9 74 7-88 99-184 (475)
56 TIGR02259 benz_CoA_red_A benzo 97.7 0.00084 1.8E-08 66.4 14.7 179 24-229 249-432 (432)
57 KOG0679 Actin-related protein 97.5 0.0014 3E-08 63.8 12.6 83 5-96 119-202 (426)
58 COG5277 Actin and related prot 97.4 0.0012 2.5E-08 67.9 11.4 86 4-96 118-204 (444)
59 PRK13317 pantothenate kinase; 97.4 0.0024 5.2E-08 61.6 12.5 49 182-230 222-273 (277)
60 PF02782 FGGY_C: FGGY family o 96.8 0.0013 2.8E-08 60.3 4.4 76 154-231 120-196 (198)
61 COG4457 SrfB Uncharacterized p 96.5 0.019 4.1E-07 59.8 10.3 53 181-233 777-848 (1014)
62 PF01968 Hydantoinase_A: Hydan 96.4 0.0079 1.7E-07 58.6 6.8 69 157-228 216-284 (290)
63 TIGR01315 5C_CHO_kinase FGGY-f 96.2 0.011 2.5E-07 62.9 7.7 85 148-234 409-493 (541)
64 PRK15027 xylulokinase; Provisi 96.2 0.009 1.9E-07 62.9 6.7 78 150-234 357-437 (484)
65 PLN02669 xylulokinase 96.1 0.015 3.2E-07 62.1 7.9 72 157-231 421-492 (556)
66 COG1069 AraB Ribulose kinase [ 96.1 0.073 1.6E-06 54.8 12.1 184 46-234 269-481 (544)
67 PF14450 FtsA: Cell division p 96.0 0.013 2.8E-07 49.1 5.3 47 47-93 1-52 (120)
68 KOG0676 Actin and related prot 95.8 0.025 5.5E-07 56.3 6.9 170 46-230 146-345 (372)
69 PRK00047 glpK glycerol kinase; 95.6 0.028 6E-07 59.4 7.2 77 156-234 376-453 (498)
70 PTZ00294 glycerol kinase-like 95.6 0.029 6.3E-07 59.3 7.1 77 156-234 379-456 (504)
71 TIGR00555 panK_eukar pantothen 95.5 0.13 2.9E-06 49.4 10.7 47 181-227 229-278 (279)
72 TIGR01312 XylB D-xylulose kina 95.5 0.034 7.3E-07 58.5 7.3 77 156-234 363-440 (481)
73 TIGR02628 fuculo_kin_coli L-fu 95.4 0.032 6.9E-07 58.4 6.6 76 155-234 365-443 (465)
74 PRK04123 ribulokinase; Provisi 95.4 0.033 7.2E-07 59.6 6.9 76 156-233 412-488 (548)
75 TIGR01311 glycerol_kin glycero 95.4 0.03 6.4E-07 59.1 6.4 77 156-234 372-449 (493)
76 TIGR01234 L-ribulokinase L-rib 95.4 0.035 7.6E-07 59.2 7.0 80 150-234 406-486 (536)
77 PRK10331 L-fuculokinase; Provi 95.3 0.036 7.8E-07 58.1 6.7 80 150-234 359-439 (470)
78 TIGR01314 gntK_FGGY gluconate 95.1 0.044 9.6E-07 58.0 6.6 73 156-233 374-450 (505)
79 PLN02295 glycerol kinase 95.0 0.055 1.2E-06 57.4 7.0 78 155-234 379-462 (512)
80 TIGR02627 rhamnulo_kin rhamnul 95.0 0.051 1.1E-06 56.7 6.6 51 182-235 387-437 (454)
81 KOG2517 Ribulose kinase and re 94.9 0.083 1.8E-06 54.6 7.7 79 155-235 386-465 (516)
82 PRK10939 autoinducer-2 (AI-2) 94.8 0.056 1.2E-06 57.4 6.4 76 156-233 382-458 (520)
83 PRK10640 rhaB rhamnulokinase; 94.6 0.073 1.6E-06 55.8 6.6 76 157-235 349-425 (471)
84 KOG0681 Actin-related protein 94.0 0.046 9.9E-07 55.8 3.4 66 166-231 540-614 (645)
85 KOG0680 Actin-related protein 94.0 0.52 1.1E-05 45.4 10.0 25 182-206 317-341 (400)
86 COG1070 XylB Sugar (pentulose 93.4 0.22 4.8E-06 52.6 7.6 50 180-230 399-448 (502)
87 KOG2531 Sugar (pentulose and h 93.2 0.24 5.3E-06 49.8 6.8 55 175-231 435-489 (545)
88 KOG0797 Actin-related protein 92.6 0.48 1E-05 48.3 7.9 79 8-95 244-322 (618)
89 PF01869 BcrAD_BadFG: BadF/Bad 92.4 0.34 7.4E-06 46.7 6.6 71 156-229 197-271 (271)
90 PRK03011 butyrate kinase; Prov 91.8 4.9 0.00011 40.4 14.3 47 182-228 295-344 (358)
91 PRK11031 guanosine pentaphosph 91.6 0.41 8.8E-06 50.5 6.6 77 7-89 93-171 (496)
92 COG0248 GppA Exopolyphosphatas 91.6 0.91 2E-05 47.4 9.0 56 9-64 92-148 (492)
93 PF02541 Ppx-GppA: Ppx/GppA ph 91.3 0.84 1.8E-05 44.4 8.1 73 11-89 77-151 (285)
94 KOG0677 Actin-related protein 90.8 0.58 1.2E-05 43.7 5.8 172 47-233 151-363 (389)
95 PF07318 DUF1464: Protein of u 90.1 3.6 7.9E-05 40.5 11.1 73 159-235 241-319 (343)
96 PLN02666 5-oxoprolinase 90.0 3.3 7.1E-05 48.4 12.4 77 149-228 454-531 (1275)
97 PRK09585 anmK anhydro-N-acetyl 89.9 2.5 5.4E-05 42.4 10.0 72 156-231 263-338 (365)
98 PRK10854 exopolyphosphatase; P 89.5 1.1 2.4E-05 47.4 7.7 76 8-89 99-176 (513)
99 PF02543 CmcH_NodU: Carbamoylt 88.2 15 0.00032 37.1 14.2 81 148-233 132-215 (360)
100 PF03702 UPF0075: Uncharacteri 87.5 1.5 3.2E-05 44.0 6.6 74 155-231 260-337 (364)
101 COG0145 HyuA N-methylhydantoin 86.6 0.79 1.7E-05 49.8 4.4 42 21-63 254-296 (674)
102 COG3426 Butyrate kinase [Energ 86.2 27 0.00059 33.5 13.5 50 178-227 292-344 (358)
103 PTZ00340 O-sialoglycoprotein e 86.0 10 0.00022 37.8 11.5 40 162-206 248-287 (345)
104 TIGR03706 exo_poly_only exopol 84.7 1.7 3.7E-05 42.6 5.4 70 13-88 93-163 (300)
105 PLN02920 pantothenate kinase 1 83.7 4.4 9.6E-05 40.7 7.7 51 180-230 295-351 (398)
106 PRK00976 hypothetical protein; 83.1 7.7 0.00017 38.1 9.0 51 182-235 263-315 (326)
107 TIGR03281 methan_mark_12 putat 83.1 6.1 0.00013 38.2 8.0 50 183-235 263-315 (326)
108 COG2377 Predicted molecular ch 81.9 12 0.00026 37.2 9.8 55 178-232 286-344 (371)
109 COG0554 GlpK Glycerol kinase [ 81.8 4.2 9.2E-05 41.7 6.9 86 147-234 365-452 (499)
110 PRK14878 UGMP family protein; 81.1 49 0.0011 32.7 14.2 25 182-206 241-265 (323)
111 KOG2708 Predicted metalloprote 80.8 11 0.00025 34.7 8.5 63 160-227 237-300 (336)
112 PF06277 EutA: Ethanolamine ut 78.9 2.4 5.2E-05 43.6 4.1 38 43-85 141-178 (473)
113 TIGR03123 one_C_unchar_1 proba 76.3 1.9 4E-05 42.4 2.4 20 45-64 128-147 (318)
114 TIGR00143 hypF [NiFe] hydrogen 75.1 5.6 0.00012 43.8 6.0 49 182-230 658-711 (711)
115 PF00349 Hexokinase_1: Hexokin 70.7 17 0.00037 33.4 7.2 54 43-98 61-118 (206)
116 PF14574 DUF4445: Domain of un 68.7 23 0.0005 36.2 8.3 53 154-206 55-107 (412)
117 PF03630 Fumble: Fumble ; Int 65.2 1.5E+02 0.0033 29.5 13.1 49 181-229 286-340 (341)
118 PRK07058 acetate kinase; Provi 64.8 71 0.0015 32.4 10.6 46 157-206 297-343 (396)
119 COG0533 QRI7 Metal-dependent p 64.4 14 0.0003 36.5 5.4 51 151-206 231-285 (342)
120 PRK09604 UGMP family protein; 64.0 17 0.00036 36.2 6.2 49 182-230 254-307 (332)
121 TIGR03723 bact_gcp putative gl 61.8 21 0.00045 35.2 6.3 45 182-226 259-308 (314)
122 COG2441 Predicted butyrate kin 61.2 62 0.0013 31.0 8.8 55 181-235 272-336 (374)
123 PF14574 DUF4445: Domain of un 59.3 26 0.00056 35.9 6.6 60 143-203 289-348 (412)
124 PRK09605 bifunctional UGMP fam 59.1 20 0.00044 38.2 6.2 51 182-232 245-300 (535)
125 KOG0797 Actin-related protein 57.9 3.4 7.5E-05 42.4 0.1 69 164-233 509-591 (618)
126 PRK13310 N-acetyl-D-glucosamin 57.0 31 0.00067 33.6 6.7 49 181-229 244-300 (303)
127 PRK05082 N-acetylmannosamine k 56.6 36 0.00078 32.9 7.0 70 160-230 212-287 (291)
128 PF13941 MutL: MutL protein 54.6 7.9 0.00017 40.1 2.0 40 24-63 227-266 (457)
129 TIGR02707 butyr_kinase butyrat 51.1 53 0.0012 32.9 7.3 46 182-227 293-341 (351)
130 COG4012 Uncharacterized protei 50.4 85 0.0018 29.9 7.7 74 18-96 203-276 (342)
131 TIGR00744 ROK_glcA_fam ROK fam 50.3 23 0.00049 34.8 4.5 43 18-62 97-140 (318)
132 TIGR00329 gcp_kae1 metallohydr 49.0 25 0.00053 34.5 4.5 37 165-206 246-282 (305)
133 PF08006 DUF1700: Protein of u 48.6 59 0.0013 29.0 6.6 57 396-462 5-63 (181)
134 PRK09557 fructokinase; Reviewe 48.6 48 0.001 32.2 6.5 49 181-229 243-299 (301)
135 PLN02377 3-ketoacyl-CoA syntha 44.6 55 0.0012 34.5 6.4 55 153-207 164-219 (502)
136 PF02801 Ketoacyl-synt_C: Beta 42.3 39 0.00084 27.8 4.0 46 163-208 25-72 (119)
137 PRK09698 D-allose kinase; Prov 42.2 64 0.0014 31.3 6.3 50 181-230 235-295 (302)
138 KOG1385 Nucleoside phosphatase 42.0 21 0.00045 36.1 2.6 20 44-63 212-231 (453)
139 PF15290 Syntaphilin: Golgi-lo 41.9 1E+02 0.0023 29.3 7.0 24 383-406 83-107 (305)
140 COG5026 Hexokinase [Carbohydra 41.3 30 0.00065 35.3 3.6 29 43-71 73-102 (466)
141 PF08735 DUF1786: Putative pyr 40.4 2.6E+02 0.0056 26.6 9.5 52 10-62 132-184 (254)
142 PF08392 FAE1_CUT1_RppA: FAE1/ 39.9 82 0.0018 30.6 6.2 44 164-207 86-130 (290)
143 KOG2707 Predicted metalloprote 39.4 4.1E+02 0.0088 26.6 14.8 47 160-206 283-329 (405)
144 PF13941 MutL: MutL protein 39.1 75 0.0016 33.0 6.3 54 47-101 2-56 (457)
145 PLN03173 chalcone synthase; Pr 38.7 1.1E+02 0.0023 31.3 7.3 52 156-207 97-149 (391)
146 PF07865 DUF1652: Protein of u 38.6 1.3E+02 0.0027 22.4 5.7 50 326-375 15-65 (69)
147 COG4296 Uncharacterized protei 38.4 90 0.002 26.2 5.4 22 429-450 90-112 (156)
148 PRK09343 prefoldin subunit bet 38.4 2.3E+02 0.005 23.5 11.3 57 414-474 63-120 (121)
149 KOG0104 Molecular chaperones G 38.4 3.3E+02 0.0072 30.1 10.8 53 414-466 774-838 (902)
150 COG4819 EutA Ethanolamine util 37.5 14 0.0003 36.1 0.7 38 43-85 143-180 (473)
151 PRK00180 acetate kinase A/prop 37.1 87 0.0019 32.0 6.3 47 157-206 301-348 (402)
152 PLN03170 chalcone synthase; Pr 36.8 97 0.0021 31.7 6.7 55 153-207 98-153 (401)
153 cd02198 YjgH_like YjgH belongs 36.7 83 0.0018 25.4 5.2 50 158-207 31-82 (111)
154 PLN03172 chalcone synthase fam 36.6 1E+02 0.0022 31.5 6.8 56 152-207 93-149 (393)
155 KOG3133 40 kDa farnesylated pr 35.8 1.9E+02 0.0042 27.4 7.7 58 392-457 142-203 (267)
156 TIGR01319 glmL_fam conserved h 35.5 24 0.00051 36.5 2.0 30 175-204 382-414 (463)
157 PTZ00297 pantothenate kinase; 35.5 1.2E+02 0.0026 36.6 8.0 151 47-227 1216-1442(1452)
158 PF11593 Med3: Mediator comple 35.4 52 0.0011 32.7 4.2 40 427-467 10-49 (379)
159 TIGR03722 arch_KAE1 universal 35.1 57 0.0012 32.2 4.6 43 182-224 242-289 (322)
160 PLN02902 pantothenate kinase 34.7 1.5E+02 0.0032 33.4 7.9 50 180-230 344-400 (876)
161 PLN02854 3-ketoacyl-CoA syntha 34.7 76 0.0016 33.6 5.6 53 155-207 182-235 (521)
162 TIGR00067 glut_race glutamate 34.6 83 0.0018 29.8 5.5 42 181-226 171-212 (251)
163 KOG0103 Molecular chaperones H 34.2 77 0.0017 34.3 5.5 44 419-462 671-725 (727)
164 PLN03168 chalcone synthase; Pr 33.1 1.2E+02 0.0026 30.9 6.7 56 152-207 92-148 (389)
165 COG4012 Uncharacterized protei 32.9 39 0.00083 32.0 2.7 73 46-125 2-97 (342)
166 PF01150 GDA1_CD39: GDA1/CD39 31.0 59 0.0013 33.6 4.2 60 5-64 103-183 (434)
167 COG1940 NagC Transcriptional r 30.8 2.1E+02 0.0045 27.9 7.9 52 44-95 5-56 (314)
168 COG3894 Uncharacterized metal- 30.6 2.7E+02 0.0058 29.2 8.4 44 47-90 166-210 (614)
169 PRK15080 ethanolamine utilizat 30.3 1.9E+02 0.0042 27.6 7.3 48 43-90 22-69 (267)
170 PLN02914 hexokinase 30.1 1.6E+02 0.0035 30.9 7.1 24 43-66 93-116 (490)
171 PF10458 Val_tRNA-synt_C: Valy 30.0 2.2E+02 0.0047 20.7 6.3 43 389-432 11-53 (66)
172 PLN02939 transferase, transfer 29.3 3.7E+02 0.0081 30.9 10.0 74 362-435 237-310 (977)
173 COG0533 QRI7 Metal-dependent p 29.1 1.4E+02 0.003 29.7 6.0 46 156-201 45-90 (342)
174 TIGR03722 arch_KAE1 universal 29.1 99 0.0022 30.5 5.2 43 157-199 41-83 (322)
175 COG1548 Predicted transcriptio 29.0 27 0.00058 33.0 1.0 22 43-64 128-149 (330)
176 TIGR00016 ackA acetate kinase. 28.9 1.5E+02 0.0032 30.3 6.4 46 158-206 306-352 (404)
177 PRK14878 UGMP family protein; 28.5 89 0.0019 30.9 4.7 44 157-200 40-83 (323)
178 PLN02192 3-ketoacyl-CoA syntha 28.4 1.5E+02 0.0031 31.5 6.4 54 154-207 169-223 (511)
179 PRK00865 glutamate racemase; P 28.0 1.3E+02 0.0028 28.7 5.6 57 166-228 163-219 (261)
180 PRK12419 riboflavin synthase s 27.9 64 0.0014 28.2 3.1 60 161-230 24-83 (158)
181 TIGR00329 gcp_kae1 metallohydr 27.6 1E+02 0.0022 30.1 5.0 47 156-202 43-89 (305)
182 PRK13321 pantothenate kinase; 27.5 2.3E+02 0.0051 26.8 7.3 17 47-63 2-18 (256)
183 PRK07515 3-oxoacyl-(acyl carri 27.4 68 0.0015 32.3 3.8 38 158-195 266-303 (372)
184 PF04614 Pex19: Pex19 protein 27.3 3.4E+02 0.0073 25.7 8.2 37 421-457 143-183 (248)
185 KOG1369 Hexokinase [Carbohydra 27.0 3.8E+02 0.0082 28.0 9.0 26 43-68 84-109 (474)
186 PF03646 FlaG: FlaG protein; 26.8 1.6E+02 0.0034 23.6 5.2 43 326-376 55-98 (107)
187 PRK11199 tyrA bifunctional cho 26.8 6.4E+02 0.014 25.4 10.7 16 83-98 13-28 (374)
188 PF14276 DUF4363: Domain of un 25.7 3.7E+02 0.0081 22.0 11.3 89 364-462 25-113 (121)
189 PTZ00340 O-sialoglycoprotein e 25.6 1.3E+02 0.0029 30.0 5.3 47 156-202 44-90 (345)
190 TIGR01198 pgl 6-phosphoglucono 25.4 1.6E+02 0.0034 27.5 5.6 45 155-204 6-50 (233)
191 TIGR02707 butyr_kinase butyrat 25.4 1.3E+02 0.0028 30.2 5.3 26 47-72 2-27 (351)
192 smart00732 YqgFc Likely ribonu 25.4 1.7E+02 0.0036 22.6 5.0 22 46-67 2-23 (99)
193 cd04036 C2_cPLA2 C2 domain pre 25.1 3.6E+02 0.0079 21.7 7.9 60 278-342 54-115 (119)
194 KOG2872 Uroporphyrinogen decar 25.0 2.5E+02 0.0054 27.2 6.6 46 147-194 218-263 (359)
195 KOG2314 Translation initiation 24.9 2.9E+02 0.0063 29.3 7.5 65 398-463 582-650 (698)
196 TIGR03723 bact_gcp putative gl 24.7 1.3E+02 0.0027 29.7 5.0 66 157-224 45-116 (314)
197 cd00327 cond_enzymes Condensin 24.5 2.3E+02 0.005 26.2 6.7 44 165-208 11-56 (254)
198 PLN02404 6,7-dimethyl-8-ribity 24.3 67 0.0015 27.5 2.6 61 160-230 20-80 (141)
199 PTZ00107 hexokinase; Provision 24.0 87 0.0019 32.7 3.8 25 43-67 72-96 (464)
200 PF00814 Peptidase_M22: Glycop 23.8 1.4E+02 0.0031 28.6 5.0 69 159-227 27-99 (268)
201 cd06155 eu_AANH_C_1 A group of 23.6 1.8E+02 0.004 22.9 5.0 50 158-207 24-74 (101)
202 COG2069 CdhD CO dehydrogenase/ 23.0 71 0.0015 30.8 2.7 49 11-59 268-327 (403)
203 PLN02932 3-ketoacyl-CoA syntha 22.8 2.2E+02 0.0047 30.0 6.4 56 152-207 139-195 (478)
204 PF05957 DUF883: Bacterial pro 22.4 3.8E+02 0.0082 20.8 7.9 66 365-437 5-72 (94)
205 PRK13318 pantothenate kinase; 21.7 3.4E+02 0.0074 25.7 7.2 17 47-63 2-18 (258)
206 cd06151 YjgF_YER057c_UK114_lik 21.3 2.4E+02 0.0052 23.3 5.4 50 159-208 40-96 (126)
207 COG3840 ThiQ ABC-type thiamine 21.3 96 0.0021 28.1 3.0 30 3-32 102-159 (231)
208 PRK09604 UGMP family protein; 21.1 2E+02 0.0044 28.5 5.7 44 159-202 49-92 (332)
209 PRK12879 3-oxoacyl-(acyl carri 21.1 2.3E+02 0.0049 27.7 6.1 47 157-206 219-265 (325)
210 PF01182 Glucosamine_iso: Gluc 21.1 2.4E+02 0.0051 25.6 5.7 42 159-205 3-44 (199)
211 cd06152 YjgF_YER057c_UK114_lik 20.7 2.7E+02 0.0059 22.7 5.5 51 158-208 32-87 (114)
212 KOG3591 Alpha crystallins [Pos 20.6 6.1E+02 0.013 22.5 8.2 39 319-357 123-163 (173)
213 PHA02105 hypothetical protein 20.5 2.4E+02 0.0052 19.9 4.2 39 146-189 2-47 (68)
214 COG1334 FlaG Uncharacterized f 20.5 3.3E+02 0.0071 22.7 5.7 41 326-374 67-108 (120)
215 PF02685 Glucokinase: Glucokin 20.4 1.4E+02 0.003 29.5 4.3 48 48-95 1-48 (316)
216 smart00787 Spc7 Spc7 kinetocho 20.4 7.6E+02 0.017 24.3 9.4 83 362-455 201-286 (312)
217 PF10982 DUF2789: Protein of u 20.3 95 0.0021 23.3 2.3 15 2-16 44-58 (74)
218 cd01400 6PGL 6PGL: 6-Phosphogl 20.1 1.5E+02 0.0032 27.4 4.2 44 157-205 3-46 (219)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-110 Score=784.49 Aligned_cols=483 Identities=77% Similarity=1.148 Sum_probs=470.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
+|||++||+|+++|..+|||+++++|+||+|||++|+++.....+++||||+||||||+|++.+++|+|+|+++.||.+|
T Consensus 181 AYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThL 260 (663)
T KOG0100|consen 181 AYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHL 260 (663)
T ss_pred hhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCccc
Confidence 59999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 160 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~ 160 (487)
||.|||+++++|+...++++++.+++.+.+++.+|+++||+||+.||+..++.+.|+++++|.||+-++||..||++..+
T Consensus 261 GGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmD 340 (663)
T KOG0100|consen 261 GGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMD 340 (663)
T ss_pred CccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCCCCCc
Q 011367 161 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 240 (487)
Q Consensus 161 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~~~~~ 240 (487)
++...+.++..+|+.+++.+.+|+.|+||||++|||.||++|+++|+|++++..+||++|||+|||.+|..+|+. ...
T Consensus 341 LFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t 418 (663)
T KOG0100|consen 341 LFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDT 418 (663)
T ss_pred HHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 458
Q ss_pred cceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCCCCC
Q 011367 241 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAP 320 (487)
Q Consensus 241 ~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~ 320 (487)
.++++.|++|+++||++.+|.|..+||||+.||+.++..|+++.|+|+.+.|++|+|++.+..+|+.||+|.|.||||+|
T Consensus 419 ~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAP 498 (663)
T KOG0100|consen 419 GDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAP 498 (663)
T ss_pred CcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHH
Q 011367 321 RGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYN 400 (487)
Q Consensus 321 ~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~ 400 (487)
+|.|+|+|+|.+|.||+|+|++.++.+|++.+|+|+++.++||+|+|++|++++++|.++|+..+++.++||+||+|.|.
T Consensus 499 RGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~Yays 578 (663)
T KOG0100|consen 499 RGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYS 578 (663)
T ss_pred CCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 011367 401 MKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTESSDD 480 (487)
Q Consensus 401 ~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~ 480 (487)
+++.+.+.+++...+++++++.+..++++..+||++|++++.++|.+|.++|..++.||..+.++.+||+|... +++|
T Consensus 579 lKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~~~~~~--~~ed 656 (663)
T KOG0100|consen 579 LKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGGAPEPA--GEED 656 (663)
T ss_pred hhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--CCcc
Confidence 99999998889999999999999999999999999999999999999999999999999999999888776544 4566
Q ss_pred CCCCCCC
Q 011367 481 DDSHDEL 487 (487)
Q Consensus 481 ~~~~~~~ 487 (487)
.+.||||
T Consensus 657 ~~e~del 663 (663)
T KOG0100|consen 657 TDEKDEL 663 (663)
T ss_pred chhhccC
Confidence 7788886
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=7.3e-86 Score=705.40 Aligned_cols=466 Identities=66% Similarity=1.047 Sum_probs=441.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCC-CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCC
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH 79 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 79 (487)
.||++.||+++++||++||+++++|++||+|||++|++.... .+.++|||||||||||+||+++.++.++|+++.|+.+
T Consensus 149 a~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~ 228 (653)
T PTZ00009 149 AYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTH 228 (653)
T ss_pred CCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCC
Confidence 599999999999999999999999999999999999886543 4678999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhc-CCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHH
Q 011367 80 LGGEDFDQRVMEYFIKLIKKKH-GKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELN 158 (487)
Q Consensus 80 lGG~~id~~l~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~ 158 (487)
+||.+||.+|++|+.++|+.++ +.++..+++++.+|+.+||++|+.||.+..+.+.+++++++.++.++|||++|+++|
T Consensus 229 lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~ 308 (653)
T PTZ00009 229 LGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELC 308 (653)
T ss_pred CChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHH
Confidence 9999999999999999998887 467778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCCCC
Q 011367 159 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGD 238 (487)
Q Consensus 159 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~~~ 238 (487)
+|+++++..+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++|++..+..++||++|||+|||++|+.+++...+
T Consensus 309 ~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~ 388 (653)
T PTZ00009 309 GDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSS 388 (653)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999976778889999999999999999999986555
Q ss_pred CccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCCC
Q 011367 239 ETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPP 318 (487)
Q Consensus 239 ~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~ 318 (487)
+.+++.+.|++|++||+++.++.+.++||+|++||++++++|++..|+|+.+.|.||+|++....+|..||+|.|.++|+
T Consensus 389 ~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~ 468 (653)
T PTZ00009 389 QVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPP 468 (653)
T ss_pred cccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHH
Q 011367 319 APRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYV 398 (487)
Q Consensus 319 ~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i 398 (487)
.+.|.++|+++|++|.||+|+|++.+..+|+...++|.....+|++++++++++++.++..+|+..+++.+++|+||+|+
T Consensus 469 ~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~I 548 (653)
T PTZ00009 469 APRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYC 548 (653)
T ss_pred CCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 99999899999999999999999999999999999888766789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011367 399 YNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRS 467 (487)
Q Consensus 399 y~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~ 467 (487)
|.+|+.|.++ .+..++++++++++.+.++++++||+++.+++.++|++|+++|+++++||..|++.++
T Consensus 549 y~~r~~L~~~-~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~ 616 (653)
T PTZ00009 549 YSMKNTLQDE-KVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAA 616 (653)
T ss_pred HHHHHHHhhh-hhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999753 4889999999999999999999999988889999999999999999999999987664
No 3
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.1e-83 Score=687.84 Aligned_cols=460 Identities=51% Similarity=0.822 Sum_probs=435.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++||++|||++++|++||+|||++|++.....+.++|||||||||||+||+++.++.++|+++.|+.++
T Consensus 142 a~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~L 221 (653)
T PRK13411 142 AYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHL 221 (653)
T ss_pred CCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCc
Confidence 59999999999999999999999999999999999998765557889999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccC----CceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~ 156 (487)
||.+||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|++
T Consensus 222 GG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~ 301 (653)
T PRK13411 222 GGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEE 301 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHH
Confidence 9999999999999999999999888889999999999999999999999999998887643 257889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
+|.|+++++..+|+++|+.+++.+.+|+.|+||||+||||+|++.|+++|++..+..++||++|||+|||++|+.+++.
T Consensus 302 l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~- 380 (653)
T PRK13411 302 LTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE- 380 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC-
Confidence 9999999999999999999999999999999999999999999999999976788889999999999999999999875
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
.+++.+.|++|++||+++.++.|.++||+|++||++++++|++..|+|+.+.|.+|+|++..+.+|..||+|.|.++
T Consensus 381 ---~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i 457 (653)
T PRK13411 381 ---VKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGI 457 (653)
T ss_pred ---ccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
|+.|.|.++|+|+|++|.||+|+|++.+..+|+.+.+.++.. .+||+++++++++++.++..+|+..+++.+++|+||+
T Consensus 458 ~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs 536 (653)
T PRK13411 458 PPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADS 536 (653)
T ss_pred CCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988865 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011367 397 YVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 469 (487)
Q Consensus 397 ~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~~~ 469 (487)
|+|.+|+.|.+ +..++++++++.+.+.++++++||+++ +++.++|++++++|++.+.|+..++++++|+
T Consensus 537 ~iy~~r~~l~~---~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 537 LLYSYESTLKE---NGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999964 578999999999999999999999984 4689999999999999999999999887655
No 4
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-84 Score=657.43 Aligned_cols=463 Identities=64% Similarity=1.010 Sum_probs=449.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCC-CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCC
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH 79 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 79 (487)
+||++.||+++.+|+.+||++++++|+||+|||++|++.... ...+|||+|+||||||+|++.+.+|.+.|.++.|+.+
T Consensus 152 a~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~ 231 (620)
T KOG0101|consen 152 AYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTH 231 (620)
T ss_pred CCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhccccc
Confidence 599999999999999999999999999999999999977654 5678999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHH
Q 011367 80 LGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNN 159 (487)
Q Consensus 80 lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~ 159 (487)
+||.+||+.|++|+..+|+.+++.++..+++++.||+.+||.+|+.||....+++.+++|++|.++...|+|.+|+.++.
T Consensus 232 lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~ 311 (620)
T KOG0101|consen 232 LGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 311 (620)
T ss_pred ccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCCCCC
Q 011367 160 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDE 239 (487)
Q Consensus 160 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~~~~ 239 (487)
+++.++..++..+|+++.+++.+|+.|+||||++|+|.+|..++++|+++.+..++|||++||+|||++|+.+++.....
T Consensus 312 dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~ 391 (620)
T KOG0101|consen 312 DLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLN 391 (620)
T ss_pred HHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcccc
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999887666
Q ss_pred ccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCCCC
Q 011367 240 TKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPA 319 (487)
Q Consensus 240 ~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~ 319 (487)
..++.+.|+.|.++||++.++.|.++|++++.+|+.++.+|+++.|||+.+.|.||+|++...++|..+|.|.|.|+||+
T Consensus 392 ~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippa 471 (620)
T KOG0101|consen 392 IQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPA 471 (620)
T ss_pred ccceeeeecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHH
Q 011367 320 PRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVY 399 (487)
Q Consensus 320 ~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy 399 (487)
|.|+|.|+++|.+|.||+|+|++.+..+|+...++|+++.++||.++|++|..+++.+..+|...+.+..++|.||+|+|
T Consensus 472 prgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f 551 (620)
T KOG0101|consen 472 PRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAF 551 (620)
T ss_pred ccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011367 400 NMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQR 466 (487)
Q Consensus 400 ~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~ 466 (487)
.++..+++. ...++++++.++...++++..||+.+..+.+++|++|.++|+..+.||+.++++.
T Consensus 552 ~~~~~~~~~---~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 552 NMKATVEDE---KGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hhhhhhhhh---ccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 999999874 2889999999999999999999999988889999999999999999999998885
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.9e-82 Score=673.38 Aligned_cols=457 Identities=47% Similarity=0.795 Sum_probs=428.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++||++|||++++||+||+|||++|++... .+.++||||+||||||+||+++.++.++|+++.|+.++
T Consensus 169 ayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~L 247 (657)
T PTZ00186 169 AYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHL 247 (657)
T ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCC
Confidence 59999999999999999999999999999999999998654 36899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCC----ceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~ 156 (487)
||++||.+|++|+.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|++
T Consensus 248 GG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~ 327 (657)
T PTZ00186 248 GGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEG 327 (657)
T ss_pred CchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHH
Confidence 99999999999999999999998888889999999999999999999999998988765432 45889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
+|+|+++++..+++++|+.+++.+.+|+.|+||||+||||.|+++|+++| +..+...+||++|||+|||++|+.+++.
T Consensus 328 l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~- 405 (657)
T PTZ00186 328 ITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD- 405 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc-
Confidence 99999999999999999999999999999999999999999999999999 5667788999999999999999999875
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
.+++.+.|++|++||+++.+|.+.+|||||++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++
T Consensus 406 ---~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~i 482 (657)
T PTZ00186 406 ---VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGI 482 (657)
T ss_pred ---cCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
||.|.|.++|+|+|++|.||+|+|++.+..||+..+++|... ..|++++++++.++++++...|+..++..+++|+++.
T Consensus 483 p~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 561 (657)
T PTZ00186 483 PPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAET 561 (657)
T ss_pred CCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999865 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011367 397 YVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 469 (487)
Q Consensus 397 ~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~~~ 469 (487)
+++.+++.+.+ . ..++++++..+.+.++.+++||..+ +.+.+.|++++++|++.+.++..+++.+++|
T Consensus 562 ~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 629 (657)
T PTZ00186 562 QLTTAERQLGE---W-KYVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQAAA 629 (657)
T ss_pred HHHHHHHHhhh---h-ccCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999964 1 3589999999999999999999853 4467999999999999999999988765543
No 6
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.4e-82 Score=678.00 Aligned_cols=461 Identities=51% Similarity=0.826 Sum_probs=434.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++||++||+++++|++||+|||++|++... .+.++|||||||||||+|++++.++.++|+++.|+.++
T Consensus 181 a~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~L 259 (673)
T PLN03184 181 AYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 259 (673)
T ss_pred CCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCcc
Confidence 59999999999999999999999999999999999988754 36789999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccC----CceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~ 156 (487)
||.+||++|++|+.++|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|++
T Consensus 260 GG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~ 339 (673)
T PLN03184 260 GGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEE 339 (673)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHH
Confidence 9999999999999999999999888889999999999999999999999999888876542 257889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
+|.++++++..+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++| +..+...+||++|||+|||++|+.+++.
T Consensus 340 l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~- 417 (673)
T PLN03184 340 LCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE- 417 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC-
Confidence 99999999999999999999999999999999999999999999999999 5677888999999999999999999875
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
.+++.+.|++|++||+++.++.+.++||+|++||++++++|++..|+|+.+.|.+|+|++....+|..||+|.|.++
T Consensus 418 ---~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i 494 (673)
T PLN03184 418 ---VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI 494 (673)
T ss_pred ---ccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
|+.|.|.++|+|+|++|.||+|+|++.+..+++...++|+.. .+||+++++++++++.++..+|+..+++.+++|+||+
T Consensus 495 ~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~ 573 (673)
T PLN03184 495 PPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADS 573 (673)
T ss_pred CCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999998865 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 011367 397 YVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 474 (487)
Q Consensus 397 ~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~ 474 (487)
|+|.+|+.+.+ +..++++++++++.+.++++++||+.+ +.+++++++++|.+.+.++..+++.++|++|+|+
T Consensus 574 ~iy~~r~~l~e---~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 645 (673)
T PLN03184 574 VVYQTEKQLKE---LGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGP 645 (673)
T ss_pred HHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999953 788999999999999999999999976 5789999999999999999999998887766443
No 7
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.2e-82 Score=675.97 Aligned_cols=458 Identities=45% Similarity=0.772 Sum_probs=430.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||++|++||++|||++++||+||+|||++|++... .+.++||||+||||||+||+++.++.++|+++.|+.++
T Consensus 144 a~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~l 222 (668)
T PRK13410 144 AYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQL 222 (668)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCC
Confidence 59999999999999999999999999999999999998764 37899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCC----ceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~ 156 (487)
||.+||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|++
T Consensus 223 GG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~ 302 (668)
T PRK13410 223 GGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFES 302 (668)
T ss_pred ChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHH
Confidence 99999999999999999999998888899999999999999999999999999988876543 46788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
+|.++++++..+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++| +..+..++||++|||+|||++|+.+++.
T Consensus 303 l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~- 380 (668)
T PRK13410 303 LCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE- 380 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc-
Confidence 99999999999999999999999999999999999999999999999999 5678889999999999999999999875
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
.+++.+.|++|+++|+++.+|.+.++||+|++||++++.+|++..|+|+.+.|.||+|++....+|..||+|.|.++
T Consensus 381 ---~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i 457 (668)
T PRK13410 381 ---LKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGI 457 (668)
T ss_pred ---ccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
|+.|.|.++|+|+|++|.||+|+|++.+..+|++..++|... .+|++++++++++++.++..+|+..+++.+++|++|+
T Consensus 458 ~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~ 536 (668)
T PRK13410 458 PPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALT 536 (668)
T ss_pred CCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765 7799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh-hhhhhccCChHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 011367 397 YVYNMKNQIND-KDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQ 465 (487)
Q Consensus 397 ~iy~~r~~l~~-~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~-~~a~~e~~~~kl~eL~~~~~pi~~r~~~ 465 (487)
|+|.+|+.|.+ .+.+..++++++++.+...++++++||+++ .....+.|.++++.|+.+..||..|+.+
T Consensus 537 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 537 LIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999965 235889999999999999999999999976 3566777888888888899999888888
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=4e-82 Score=676.06 Aligned_cols=454 Identities=54% Similarity=0.868 Sum_probs=429.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||++|++||++||+++++|++||+|||++|+.... .+.++|||||||||||+||+++.++.++|+++.|+.++
T Consensus 183 a~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~L 261 (663)
T PTZ00400 183 AYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSL 261 (663)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCc
Confidence 59999999999999999999999999999999999998754 47899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCC----ceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~ 156 (487)
||.+||.+|++|+.++|+++++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|++
T Consensus 262 GG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~ 341 (663)
T PTZ00400 262 GGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEE 341 (663)
T ss_pred CHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHH
Confidence 99999999999999999999998888899999999999999999999999888888766543 47889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
+|+|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|+++|+++| +.++..++||++|||+|||++|+.+++.
T Consensus 342 l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~- 419 (663)
T PTZ00400 342 LTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE- 419 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC-
Confidence 99999999999999999999999999999999999999999999999999 5677889999999999999999999875
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
.+++.+.|++|++||+++.+|.|.++||+|+++|++++++|++..|+|+.+.|.||+|++..+.+|..||+|.|.++
T Consensus 420 ---~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i 496 (663)
T PTZ00400 420 ---IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGI 496 (663)
T ss_pred ---ccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
|+.|.|.++|+|+|++|.||+|+|++.+..+|+...++|+.. .+|++++++++++++.++..+|+..+++.+++|+||+
T Consensus 497 ~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs 575 (663)
T PTZ00400 497 PPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAET 575 (663)
T ss_pred CCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998865 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011367 397 YVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRS 467 (487)
Q Consensus 397 ~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~ 467 (487)
|+|.+|+.|.+ +...+++++++.+.+.++++++||+++ +.++|++++++|++.+.++..++++++
T Consensus 576 ~iy~~r~~l~e---~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~ 640 (663)
T PTZ00400 576 LIYSVEKQLSD---LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQG 640 (663)
T ss_pred HHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999963 788999999999999999999999976 589999999999999999999987643
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.4e-81 Score=670.63 Aligned_cols=455 Identities=58% Similarity=0.917 Sum_probs=430.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||++|++||++||+++++|++||+|||++|++... .+.++|||||||||||+|++++.++.++++++.|+.++
T Consensus 142 a~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~l 220 (627)
T PRK00290 142 AYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHL 220 (627)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCc
Confidence 59999999999999999999999999999999999988764 47899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCC----ceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~ 156 (487)
||.+||.+|++|+.++|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|++
T Consensus 221 GG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~ 300 (627)
T PRK00290 221 GGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEE 300 (627)
T ss_pred ChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHH
Confidence 99999999999999999999998888899999999999999999999999999988876542 57889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
+|+|+++++..+|+++|+.+++.+.+|+.|+||||+||+|+|++.|++.| +..+..++||++|||+|||++|+.+++.
T Consensus 301 l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~- 378 (627)
T PRK00290 301 LTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD- 378 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC-
Confidence 99999999999999999999999999999999999999999999999999 6778889999999999999999999875
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
.+++.+.|++|++||+++.++.+.++||+|+++|++++++|++..|+|+.+.|.+|+|++....+|..||+|.|.++
T Consensus 379 ---~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~ 455 (627)
T PRK00290 379 ---VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGI 455 (627)
T ss_pred ---ccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
|+.|.|.++|+++|++|.||+|+|++.+..+|+..+++|... .++++++++++++++.++...|+..+++.+++|+||+
T Consensus 456 ~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~ 534 (627)
T PRK00290 456 PPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADS 534 (627)
T ss_pred CCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 999999989999999999999999999999999999998765 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011367 397 YVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSG 468 (487)
Q Consensus 397 ~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~~ 468 (487)
|+|.+|+.|.. +..++++++++++.+.++++++||+++ +.++|++++++|+++++|+..|++++++
T Consensus 535 ~i~~~~~~l~~---~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~~ 600 (627)
T PRK00290 535 LIYQTEKTLKE---LGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQAQ 600 (627)
T ss_pred HHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999963 788999999999999999999999976 6899999999999999999999887533
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=5e-80 Score=658.36 Aligned_cols=452 Identities=56% Similarity=0.871 Sum_probs=427.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++||++||+++++||+||+|||++|+.... .+.++|||||||||||+||+++.++.++|+++.|+.++
T Consensus 144 a~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~l 222 (621)
T CHL00094 144 AYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHL 222 (621)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCc
Confidence 58999999999999999999999999999999999987654 36789999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccC----CceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~ 156 (487)
||++||.+|++|+.++|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+.. +.++...|||++|++
T Consensus 223 GG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~ 302 (621)
T CHL00094 223 GGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEE 302 (621)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHH
Confidence 9999999999999999999999888889999999999999999999999988888887653 256888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
++.++++++..+|+++|+.+++.+.+|+.|+||||+||||.|++.|+++| +..+..++||++|||+|||++|+.+++.
T Consensus 303 l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~- 380 (621)
T CHL00094 303 LCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE- 380 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC-
Confidence 99999999999999999999999999999999999999999999999999 5678889999999999999999998875
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
.+++.+.|++|++||+++.++.+.++||+|+++|++++++|++..++|+.+.|.+|+|++..+.+|..||+|.|.++
T Consensus 381 ---~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~ 457 (621)
T CHL00094 381 ---VKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGI 457 (621)
T ss_pred ---ccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
|+.+.|.++|+++|++|.||+|+|++.+..+|+...+.|... .+|++++++++++++.++...|+..+++.+++|.||+
T Consensus 458 ~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~ 536 (621)
T CHL00094 458 PPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAES 536 (621)
T ss_pred CCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999888754 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 011367 397 YVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 465 (487)
Q Consensus 397 ~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~ 465 (487)
|+|.+|+.+.. +..++++++++++.+.++++++||+++ ..++|++++++|++.++|+..+++.
T Consensus 537 ~i~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 537 LCYQAEKQLKE---LKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999963 788999999999999999999999986 5689999999999999999998877
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=6.4e-80 Score=657.63 Aligned_cols=452 Identities=58% Similarity=0.894 Sum_probs=427.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||++|++||++||+++++|++||+|||++|++.....+.++|||||||||||+|++++.++.++|+++.|+.++
T Consensus 139 a~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~l 218 (595)
T TIGR02350 139 AYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHL 218 (595)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCccc
Confidence 48999999999999999999999999999999999988764457899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccC----CceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~ 156 (487)
||.+||++|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|++
T Consensus 219 GG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~ 298 (595)
T TIGR02350 219 GGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEE 298 (595)
T ss_pred CchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHH
Confidence 9999999999999999999999888889999999999999999999999999888887654 257889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
+|+|+++++..+|+++|+.+++.+.+|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++.
T Consensus 299 l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~- 376 (595)
T TIGR02350 299 LTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD- 376 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC-
Confidence 999999999999999999999999999999999999999999999999995 678889999999999999999999876
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
.+++.+.|++|++||+++.++.+.++||+|+++|++++++|++..|+|+.+.|.+|+|++..+.+|..||+|.+.++
T Consensus 377 ---~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~ 453 (595)
T TIGR02350 377 ---VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGI 453 (595)
T ss_pred ---cccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
|+.+.|.++|+++|++|.||+|+|++.+..+|+...+.++.. .+||+++++++++++.++...|+..+++.+++|.||+
T Consensus 454 ~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs 532 (595)
T TIGR02350 454 PPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADS 532 (595)
T ss_pred CCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998875 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 011367 397 YVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVY 464 (487)
Q Consensus 397 ~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~ 464 (487)
|+|.+|+.|.+ +..++++++++++.+.++++++||+++ +.++|++++++|++.++++..+++
T Consensus 533 ~iy~~r~~l~~---~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 533 LAYQAEKTLKE---AGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred HHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999964 578899999999999999999999986 678999999999999999998764
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=3.5e-78 Score=640.22 Aligned_cols=449 Identities=43% Similarity=0.696 Sum_probs=419.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++||++||+++++|++||+|||++|++... .+.++||||+||||||+|++++.++.++|+++.|+.++
T Consensus 138 a~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~l 216 (599)
T TIGR01991 138 AYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSAL 216 (599)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCC
Confidence 59999999999999999999999999999999999988765 47889999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 160 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~ 160 (487)
||++||.+|++|+.++ ++.+...+++.+.+|+.+||++|+.||.+..+.+.++. +|.++.++|||++|+++|+|
T Consensus 217 GG~d~D~~l~~~l~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ 290 (599)
T TIGR01991 217 GGDDFDHALAKWILKQ----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQP 290 (599)
T ss_pred CHHHHHHHHHHHHHHh----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHH
Confidence 9999999999998865 45555668899999999999999999999988888864 68899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCCCCCc
Q 011367 161 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 240 (487)
Q Consensus 161 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~~~~~ 240 (487)
+++++..+|+++|+.+++.+.+|+.|+||||+||||+|+++|++.| +..+..++||++|||+|||++|+.+++. +..
T Consensus 291 ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~--~~~ 367 (599)
T TIGR01991 291 LVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGN--RIG 367 (599)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccc--ccc
Confidence 9999999999999999999999999999999999999999999999 4667778999999999999999999876 345
Q ss_pred cceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCCCCC
Q 011367 241 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAP 320 (487)
Q Consensus 241 ~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~ 320 (487)
+++.+.|++|++||+++.+|.+.++||+|++||++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|
T Consensus 368 ~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~ 447 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMV 447 (599)
T ss_pred CceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHH
Q 011367 321 RGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYN 400 (487)
Q Consensus 321 ~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~ 400 (487)
.|.++|+|+|++|.||+|+|++.+..+|++..+.|... ..+++++++++.+++.++..+|+..+...+++|++|+|+|.
T Consensus 448 ~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 526 (599)
T TIGR01991 448 AGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEA 526 (599)
T ss_pred CCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765 66999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011367 401 MKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQR 466 (487)
Q Consensus 401 ~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~ 466 (487)
+++.+.+ ....+++++++.+...++++++||+++ +.+.++++.++|++.+.++..+.+.+
T Consensus 527 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 527 LQAALAA---DGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred HHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999864 456899999999999999999999976 57899999999999999999876654
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=7.9e-77 Score=631.12 Aligned_cols=445 Identities=41% Similarity=0.682 Sum_probs=412.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++||++||+++++||+||+|||++|++... .+.++||||+||||||+|++++.++.++|+++.|+.++
T Consensus 158 a~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~l 236 (616)
T PRK05183 158 AYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSAL 236 (616)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCc
Confidence 59999999999999999999999999999999999988654 36799999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 160 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~ 160 (487)
||.+||.+|++|+.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.+..+ ...|||++|+++|.|
T Consensus 237 GG~d~D~~l~~~~~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~ 306 (616)
T PRK05183 237 GGDDFDHLLADWILEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAP 306 (616)
T ss_pred CHHHHHHHHHHHHHHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHH
Confidence 99999999999988765 44444678899999999999999999999888887532 224999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCCCCCc
Q 011367 161 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 240 (487)
Q Consensus 161 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~~~~~ 240 (487)
+++++..+|+++|+++++.+.+|+.|+||||+||||+|++.|+++| +..+..++||++|||+|||++|+.+++. ...
T Consensus 307 l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~ 383 (616)
T PRK05183 307 LVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN--KPD 383 (616)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc--ccc
Confidence 9999999999999999999999999999999999999999999999 4566678999999999999999999876 335
Q ss_pred cceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCCCCC
Q 011367 241 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAP 320 (487)
Q Consensus 241 ~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~ 320 (487)
+++.+.|++|++||+++.+|.+.++||+|++||++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|
T Consensus 384 ~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~ 463 (616)
T PRK05183 384 SDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMA 463 (616)
T ss_pred CceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHH
Q 011367 321 RGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYN 400 (487)
Q Consensus 321 ~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~ 400 (487)
.|.++|+|+|++|.||+|+|++.+..+|+..++.|... ..+++++++++++++.++..+|+..+++.+++|++|.|+|.
T Consensus 464 ~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~ 542 (616)
T PRK05183 464 AGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEA 542 (616)
T ss_pred CCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999765 56999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011367 401 MKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQR 466 (487)
Q Consensus 401 ~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~ 466 (487)
+++.+.+ ....+++++++++...++++++||..+ +.+.|++++++|++.+.++..+.+++
T Consensus 543 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 543 LQAALAA---DGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred HHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999964 346789999999999999999999865 68899999999999999999876653
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-78 Score=587.34 Aligned_cols=459 Identities=53% Similarity=0.848 Sum_probs=437.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+|+++|.++||++++++++||+|||++|+++... +..++|||+||||||++++.+.+++|+|.++.||.++
T Consensus 169 AyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtfl 247 (640)
T KOG0102|consen 169 AYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHL 247 (640)
T ss_pred HHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCcccc
Confidence 499999999999999999999999999999999999999876 8899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCC----ceeEEEecHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEE 156 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~ 156 (487)
||.+||..+..|+...|+...++++..+.+++.||+.++|++|++||......+.++.+..+ .-+++.+||.+|++
T Consensus 248 ggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~ 327 (640)
T KOG0102|consen 248 GGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEE 327 (640)
T ss_pred ChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877655 56889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 236 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~ 236 (487)
++.+++++.+.++.++|+.|++...||+.|+||||++|+|.+++.+++.| +..+...+||+++||.|||+++..+++.
T Consensus 328 ~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge- 405 (640)
T KOG0102|consen 328 LVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE- 405 (640)
T ss_pred hhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc-
Confidence 99999999999999999999999999999999999999999999999999 6788899999999999999999999987
Q ss_pred CCCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCC
Q 011367 237 GDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGI 316 (487)
Q Consensus 237 ~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i 316 (487)
++++.+.|++|+++||++.+|.|..++|+++.||+.++..|.+..|+|+.+.|.+|+|++....+|..+|+|.+.|+
T Consensus 406 ---VkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gi 482 (640)
T KOG0102|consen 406 ---VKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGI 482 (640)
T ss_pred ---ccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeeccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHH
Q 011367 317 PPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLET 396 (487)
Q Consensus 317 ~~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~ 396 (487)
||.|+|.|+|+|+|.+|.||+++|+|.++.+|+.+++++... +.||+.+++.|+.+++++...|+.++++.+..|..++
T Consensus 483 pp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s 561 (640)
T KOG0102|consen 483 PPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADS 561 (640)
T ss_pred CCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhh
Confidence 999999999999999999999999999999999999999998 6699999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011367 397 YVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 469 (487)
Q Consensus 397 ~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~~~ 469 (487)
+++.....+.. +.+..+.++..+|...+..+.+.+..-...+.+++..+...|++...|+..-++..++.
T Consensus 562 ~~~~te~~~~~---~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~ 631 (640)
T KOG0102|consen 562 IIYDTEKSLKE---FEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGA 631 (640)
T ss_pred eecCchhhhhh---hhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 99999998865 77888888999999999999999965333345899999999999999999998887544
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=8.7e-75 Score=610.11 Aligned_cols=423 Identities=35% Similarity=0.557 Sum_probs=383.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||++|++||++||+++++|++||+|||++|++.... ..++||||+||||||+|++++.++.++|+++.|+.++
T Consensus 150 a~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~-~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~l 228 (595)
T PRK01433 150 AHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNML 228 (595)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCC-CCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCccc
Confidence 599999999999999999999999999999999999987543 5689999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 160 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~ 160 (487)
||++||.+|++|+..+|.. ..+.+ .+..||++|+.||.+....+ ..++|||++|+++|+|
T Consensus 229 GG~d~D~~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~ 288 (595)
T PRK01433 229 GGNDIDVVITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILP 288 (595)
T ss_pred ChHHHHHHHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHH
Confidence 9999999999999887632 12222 23459999999998765321 1688999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCCCCCc
Q 011367 161 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 240 (487)
Q Consensus 161 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~~~~~ 240 (487)
+++++..+|+++|+.++ ..+|+.|+||||+||||+|++.|+++| +.++..+.||++|||+|||++|+.+++. .
T Consensus 289 l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~ 361 (595)
T PRK01433 289 LVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----H 361 (595)
T ss_pred HHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----c
Confidence 99999999999999998 678999999999999999999999999 5677788999999999999999998865 4
Q ss_pred cceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCCCCC
Q 011367 241 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAP 320 (487)
Q Consensus 241 ~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~ 320 (487)
.++.+.|++|+++|+++.+|.+.++||||++||+++++.|++..|+|+.+.|.||||++....+|..||+|.|.|+|+.|
T Consensus 362 ~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~ 441 (595)
T PRK01433 362 TNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMK 441 (595)
T ss_pred cceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHH
Q 011367 321 RGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYN 400 (487)
Q Consensus 321 ~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~ 400 (487)
.|.++|+|+|++|.||+|+|++.+..||++.++.|..+ ..+|++++++++++++++...|...++..+++|+++++++.
T Consensus 442 ~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 520 (595)
T PRK01433 442 AGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFN 520 (595)
T ss_pred CCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999866 56999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 011367 401 MKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNP 458 (487)
Q Consensus 401 ~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~p 458 (487)
+++.+.+ +...+++++++.+...++++++||..+ +...+++++++|++.+.+
T Consensus 521 ~~~~~~~---~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 521 IERAIAE---LTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 9999964 566789999999999999999999865 455666666666665555
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=8e-74 Score=615.90 Aligned_cols=455 Identities=48% Similarity=0.817 Sum_probs=418.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++||++||+++++||+||+|||++|++.....++++|||||||||+|+|++++.++.+++++..++..+
T Consensus 144 a~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~l 223 (602)
T PF00012_consen 144 AYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNL 223 (602)
T ss_dssp TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTC
T ss_pred hhhhhhhhhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhccccccccccccccccc
Confidence 48999999999999999999999999999999999988776668899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccC--CceeEEeeecccC-CceeEEEecHHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS--QHQVRVEIESLFD-GIDFSEPLTRARFEEL 157 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~-~~~~~~~itr~~fe~~ 157 (487)
||.+||.+|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||. +....+.++.+.+ |.++.+.|||++|+++
T Consensus 224 GG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l 303 (602)
T PF00012_consen 224 GGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEEL 303 (602)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHH
T ss_pred ccceecceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccc
Confidence 999999999999999999999988888999999999999999999999 6677778887777 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCCC
Q 011367 158 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 237 (487)
Q Consensus 158 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~~ 237 (487)
++|+++++..+|.++|+.+++...+|++|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++.
T Consensus 304 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~-- 380 (602)
T PF00012_consen 304 CEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGS-- 380 (602)
T ss_dssp THHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS--
T ss_pred ccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccc--
Confidence 99999999999999999999999999999999999999999999999995 778888999999999999999999876
Q ss_pred CCccceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCC
Q 011367 238 DETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIP 317 (487)
Q Consensus 238 ~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~ 317 (487)
++.+++.+.|++|++||+...++.+.+++|+|+++|...+..|++..++|+.+.|.+|+|+.....+|..||+|.+.+++
T Consensus 381 ~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~ 460 (602)
T PF00012_consen 381 FRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIP 460 (602)
T ss_dssp CSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccc
Confidence 45678889999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHH
Q 011367 318 PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETY 397 (487)
Q Consensus 318 ~~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~ 397 (487)
+.+.|.++|+++|++|.+|+|+|++.+..++....+.+..... +++++++++.++++++...|+..++..+++|+||++
T Consensus 461 ~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~ 539 (602)
T PF00012_consen 461 PAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESY 539 (602)
T ss_dssp SSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeEEeeeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHH
Confidence 9999999999999999999999999999999988899888745 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 011367 398 VYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQ 465 (487)
Q Consensus 398 iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~-~~a~~e~~~~kl~eL~~~~~pi~~r~~~ 465 (487)
+|.+|+.+++. .++++++++ .+.+++..+||+++ .+++.++|++|+++|++..+||..|+++
T Consensus 540 i~~~r~~l~~~---~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 540 IYELRDKLEED---KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHTCC---GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhh---hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999873 667777766 78899999999987 5678999999999999999999999874
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-72 Score=591.00 Aligned_cols=450 Identities=55% Similarity=0.870 Sum_probs=432.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
+||++.||+++++||++|||++++|++||+|||++|++... .+.+|||||+||||||+|++++.++.++|+++.|+.++
T Consensus 129 ayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~L 207 (579)
T COG0443 129 AYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHL 207 (579)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCccc
Confidence 59999999999999999999999999999999999999887 58899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 160 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~ 160 (487)
||++||.+|.+|+..+|..+++.++..+++.+.||+.+||++|+.||....+.+.++++..+.++...|||++||+++.+
T Consensus 208 GGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~d 287 (579)
T COG0443 208 GGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILD 287 (579)
T ss_pred CchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888777778899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCCCCCCc
Q 011367 161 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 240 (487)
Q Consensus 161 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~~~~~~ 240 (487)
++.++..++..+|..+++...+|+.|+||||++|||.|++.++++|+ +.+...+||+++||.|||++|..+++. .
T Consensus 288 ll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~----~ 362 (579)
T COG0443 288 LLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGE----V 362 (579)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCc----c
Confidence 99999999999999999999999999999999999999999999995 888999999999999999999999877 3
Q ss_pred cceEEEeeccccCceeeeCceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCCCCC
Q 011367 241 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAP 320 (487)
Q Consensus 241 ~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~ 320 (487)
.++.+.|++|+++|+++.++.+.+++++++.+|.++...|++..|+|..+.+++++|++....+|..+|.|.+.++||.|
T Consensus 363 ~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~ 442 (579)
T COG0443 363 PDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAP 442 (579)
T ss_pred cCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEEeCCccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHH
Q 011367 321 RGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYN 400 (487)
Q Consensus 321 ~g~~~i~v~f~id~~g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~ 400 (487)
.|.++|+++|.+|.||+++|++.+..+|+...++|....+ |++++++.|.+.+..+...|+..++..+.+|..+.+++.
T Consensus 443 ~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~ 521 (579)
T COG0443 443 RGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYS 521 (579)
T ss_pred CCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999867 999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 011367 401 MKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 465 (487)
Q Consensus 401 ~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~ 465 (487)
++..|.+. . .++++++.++.+++.++++||+. . .++++.+.++|+....++..++++
T Consensus 522 ~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 522 LEKALKEI---V-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHhhh---c-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999874 3 89999999999999999999998 2 899999999999999999988765
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-67 Score=529.12 Aligned_cols=448 Identities=30% Similarity=0.527 Sum_probs=405.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCC------CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEe
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG------GEKNILVFDLGGGTFDVSILTIDNGVFEVLST 74 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~------~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~ 74 (487)
.||++.||+++.+||++|||++++|++|.+|+|++||+.+.+ ++.+|+++|+|.+++.+|++.+..|.+.++++
T Consensus 146 ~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~t 225 (727)
T KOG0103|consen 146 SYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLAT 225 (727)
T ss_pred ccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeee
Confidence 599999999999999999999999999999999999998765 46789999999999999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHH
Q 011367 75 NGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF 154 (487)
Q Consensus 75 ~~~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~f 154 (487)
.+|.++||++||+.|.+|++.+|+.+|+++...++++..||+.+||++|+.||++....++|++++++.|.+..|+|++|
T Consensus 226 a~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEf 305 (727)
T KOG0103|consen 226 AFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEF 305 (727)
T ss_pred ecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccC
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 234 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~ 234 (487)
|++|.|+++++..++.++|+++++...||+.|.+|||+||||.|.++|+++| ++.+..++|.++|||+|||++++++|+
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP 384 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSP 384 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred CCCCCccceEEEeeccccCceeee----C-ceeEEeeccccccCcceeEEEEeecCCceeEEEEEEecC-ccccccCcce
Q 011367 235 EGGDETKDILLLDVAPLTLGIETV----G-GVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGE-RSLTKDCRLL 308 (487)
Q Consensus 235 ~~~~~~~~~~~~d~~~~s~gi~~~----~-~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~l 308 (487)
. ++++.+.+.|+.|++|.+.+. + +....+||+|.++|.++..+|....+ +.+.++++. ...+.....|
T Consensus 385 ~--frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~----F~lea~yt~~~~lp~~~~kI 458 (727)
T KOG0103|consen 385 T--FRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGP----FTLEAKYTKVNKLPYPKPKI 458 (727)
T ss_pred c--ccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCc----eEEEEEeccccccCCCCCce
Confidence 8 779999999999999988754 2 45578999999999999999877654 677777765 4555455789
Q ss_pred eEEEecCCCCCCC-CCCeEEEEEEEeCCccEEEEEEec----------------------------CCCc--e--eeEEE
Q 011367 309 GKFDLSGIPPAPR-GTPQIEVTFEVDANGILNVKAEDK----------------------------GTGK--S--EKITI 355 (487)
Q Consensus 309 g~~~l~~i~~~~~-g~~~i~v~f~id~~g~l~v~~~~~----------------------------~~~~--~--~~i~i 355 (487)
++|.+.++.+... ...++.|.++++.+|++.+..... ..++ . ..+.+
T Consensus 459 ~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~ 538 (727)
T KOG0103|consen 459 EKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPI 538 (727)
T ss_pred eeEEecccccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccc
Confidence 9999999888766 446899999999999999854210 0111 1 11222
Q ss_pred ecC-CCCCCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHH
Q 011367 356 TND-KGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWL 434 (487)
Q Consensus 356 ~~~-~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL 434 (487)
... .+.|+..+++..+++..+|..+|+...++..++|.||+|||++|++|.+ .|.+|.++.+++++...|+++++||
T Consensus 539 ~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~--~y~~f~~~a~~e~~~~~l~~~E~wl 616 (727)
T KOG0103|consen 539 EAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSD--KYEDFITDAEREKLKKMLTDTEEWL 616 (727)
T ss_pred eeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhh--hhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 222 3579999999999999999999999999999999999999999999988 4999999999999999999999999
Q ss_pred hcC-CCCCHHHHHHHHHHHHHHHH
Q 011367 435 DDN-QSAEKEDYEEKLKEVEAVCN 457 (487)
Q Consensus 435 ~~~-~~a~~e~~~~kl~eL~~~~~ 457 (487)
|++ ++.++..|..|+.+|+.+.+
T Consensus 617 yedGed~~k~~Y~~kl~elk~~g~ 640 (727)
T KOG0103|consen 617 YEDGEDQTKAVYVAKLEELKKLGD 640 (727)
T ss_pred HhcCcccchHHHHHHHHHHHhhhh
Confidence 976 78999999999999999995
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-59 Score=473.07 Aligned_cols=455 Identities=29% Similarity=0.472 Sum_probs=392.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCC----CCcEEEEEEeCCCeEEEEEEEEe----------C
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG----GEKNILVFDLGGGTFDVSILTID----------N 66 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~GggT~dvsv~~~~----------~ 66 (487)
.||+++||+++.+||++||++++.||++-+|||+.|++.+.. .+++++|||||+|+|.++++.+. .
T Consensus 167 ~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~ 246 (902)
T KOG0104|consen 167 PFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQ 246 (902)
T ss_pred cccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCcc
Confidence 499999999999999999999999999999999999998643 67899999999999999999984 2
Q ss_pred CeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHhcCC--CCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCce
Q 011367 67 GVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK--DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGID 144 (487)
Q Consensus 67 ~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~ 144 (487)
..+++++.++|..|||..|.++|.+|+.+.|.++++. ++..++|++.+|.++|+++|..||++..+.+.|+++++++|
T Consensus 247 p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiD 326 (902)
T KOG0104|consen 247 PQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDID 326 (902)
T ss_pred ceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccc
Confidence 5789999999999999999999999999999998874 56789999999999999999999999999999999999999
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhh
Q 011367 145 FSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYG 224 (487)
Q Consensus 145 ~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~G 224 (487)
|..+|||++||++|+++..++..+|.++|..++++..+|+.|+|+||+||+|.||+.|.+..+..++...+|.|+|+++|
T Consensus 327 Fr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmG 406 (902)
T KOG0104|consen 327 FRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMG 406 (902)
T ss_pred cccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hhhhhhhccCCCCCCccceEEEeeccccCceeeeCc--------eeEEeeccccccCcceeEEEEeecCCceeEEEEEEe
Q 011367 225 AAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGG--------VMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFE 296 (487)
Q Consensus 225 Aa~~a~~~s~~~~~~~~~~~~~d~~~~s~gi~~~~~--------~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~ 296 (487)
|+++|+.+|.. |+++++.+.|.++|+|-+...+. ....+|+++.++|..+..+|+.+.|+ +.+.+-.
T Consensus 407 av~~aA~LSks--FKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~ 481 (902)
T KOG0104|consen 407 AVYQAAHLSKS--FKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINY 481 (902)
T ss_pred HHHHHHhhccc--ccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccch
Confidence 99999999988 78999999999988887765432 22358999999999998888777664 3333222
Q ss_pred cCccccccCcceeEEEecCCCCC----CC---CCCeEEEEEEEeCCccEEEEEEecC---------------------C-
Q 011367 297 GERSLTKDCRLLGKFDLSGIPPA----PR---GTPQIEVTFEVDANGILNVKAEDKG---------------------T- 347 (487)
Q Consensus 297 g~~~~~~~~~~lg~~~l~~i~~~----~~---g~~~i~v~f~id~~g~l~v~~~~~~---------------------~- 347 (487)
+.-. ..+-++.+.|+... +. ...-|.++|.+|..|++.|+..+.. +
T Consensus 482 ~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~ 556 (902)
T KOG0104|consen 482 GDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTS 556 (902)
T ss_pred hhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhcccccc
Confidence 2100 12347777776542 11 1235999999999999988643200 0
Q ss_pred ----------------------Cc--e------------------------------------eeEEEecC---CCCCCH
Q 011367 348 ----------------------GK--S------------------------------------EKITITND---KGRLSQ 364 (487)
Q Consensus 348 ----------------------~~--~------------------------------------~~i~i~~~---~~~ls~ 364 (487)
++ . ..+.|... ...|..
T Consensus 557 e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~ 636 (902)
T KOG0104|consen 557 EGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNE 636 (902)
T ss_pred ccccccccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCch
Confidence 00 0 01333332 235889
Q ss_pred HHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcC-CCCCHH
Q 011367 365 EEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKE 443 (487)
Q Consensus 365 e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~-~~a~~e 443 (487)
..++....+++.+..+|+...++.++.|.||+|+|++.+.+.++ .|..+.+++|+..|++.+..+.+||++. ...+++
T Consensus 637 ~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~-ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~ 715 (902)
T KOG0104|consen 637 NALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDD-EYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTE 715 (902)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCc-hHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchh
Confidence 99999999999999999999999999999999999999999984 7999999999999999999999999876 678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 011367 444 DYEEKLKEVEAVCNPIITAVYQR 466 (487)
Q Consensus 444 ~~~~kl~eL~~~~~pi~~r~~~~ 466 (487)
+|.+++.+|++++..+..|..++
T Consensus 716 ~~~ek~a~L~~l~~~~~~R~ee~ 738 (902)
T KOG0104|consen 716 MLTEKLAELKKLETSKNFREEER 738 (902)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999997765
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.2e-37 Score=317.62 Aligned_cols=223 Identities=27% Similarity=0.385 Sum_probs=187.7
Q ss_pred CCCC-----HHHHHH---HHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCC-----
Q 011367 1 MLLS-----LFLRQA---TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNG----- 67 (487)
Q Consensus 1 ~~f~-----~~qR~a---~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~----- 67 (487)
+||+ +.||++ +++||+.||+++++|++||+|||++|+.... .+..+||||+||||+|+|++++.++
T Consensus 158 a~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~ 236 (450)
T PRK11678 158 VNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKRVLVVDIGGGTTDCSMLLMGPSWRGRA 236 (450)
T ss_pred CccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCeEEEEEeCCCeEEEEEEEecCcccccC
Confidence 5888 788876 6999999999999999999999999986544 4789999999999999999999653
Q ss_pred --eEEEEEecCCCCcchhHHHHHHH-HHHHHHHHH----hcCCCCc----------------------------------
Q 011367 68 --VFEVLSTNGDTHLGGEDFDQRVM-EYFIKLIKK----KHGKDIS---------------------------------- 106 (487)
Q Consensus 68 --~~~v~~~~~~~~lGG~~id~~l~-~~~~~~~~~----~~~~~~~---------------------------------- 106 (487)
..+++++.| ..+||+|||..|+ +++...|.. +++.+++
T Consensus 237 ~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (450)
T PRK11678 237 DRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRD 315 (450)
T ss_pred CcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhc
Confidence 468899988 5799999999998 678777742 2222110
Q ss_pred -cCHHHH------------HHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHH
Q 011367 107 -KDKRAI------------GKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 173 (487)
Q Consensus 107 -~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l 173 (487)
.+++.+ .+|+.+||++|+.||....+.+.++.+. .++...|||++|+++++|+++++..+|+++|
T Consensus 316 ~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L 393 (450)
T PRK11678 316 AREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLATEISQQGLEEAISQPLARILELVQLAL 393 (450)
T ss_pred cccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123222 3788999999999999999999888654 3577899999999999999999999999999
Q ss_pred HHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 174 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 174 ~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
+++++. ++.|+||||+|+||.|++.|++.||+.++ ...+|.++||.|+|++|..
T Consensus 394 ~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 394 DQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPI-VGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred HHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcE-EeCCCcchHHHHHHHHHHh
Confidence 999865 58999999999999999999999965544 4679999999999999864
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.98 E-value=4.7e-31 Score=262.93 Aligned_cols=212 Identities=26% Similarity=0.382 Sum_probs=176.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++|++.||++++.+++||+|||++|+.... .+..++|||+||||||++++...... ..++.++
T Consensus 104 ~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~l 177 (336)
T PRK13928 104 TGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKV 177 (336)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCC
Confidence 48999999999999999999999999999999999987654 36679999999999999999975422 3467899
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc----eeEEeee--cccCCceeEEEecHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARF 154 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~~~~~~~~~~~itr~~f 154 (487)
||++||+.|++++..++. .... ...||++|+.++... ...+.+. .+..+.+..+.|+|++|
T Consensus 178 GG~did~~i~~~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~ 244 (336)
T PRK13928 178 AGDKFDEAIIRYIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEI 244 (336)
T ss_pred HHHHHHHHHHHHHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHH
Confidence 999999999999886653 2221 257999999987541 1223322 23445677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CCcCCcC-EEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAG--LEKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~--~~~~~i~-~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
++++.+.++++.+.|++.|+.++ +....++ .|+|+||+|++|.|++.|++.| +.++....||++|||+|||+++..
T Consensus 245 ~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 245 REALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999985 4456677 7999999999999999999999 577778889999999999999876
Q ss_pred c
Q 011367 232 L 232 (487)
Q Consensus 232 ~ 232 (487)
+
T Consensus 324 ~ 324 (336)
T PRK13928 324 I 324 (336)
T ss_pred h
Confidence 4
No 22
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=6.5e-29 Score=247.78 Aligned_cols=211 Identities=26% Similarity=0.390 Sum_probs=172.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||++++.|++.||++.+.+++||+|||++|+.... ....++|||+||||||+++++.++.. ..+..++
T Consensus 105 ~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~l 178 (334)
T PRK13927 105 SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRV 178 (334)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCC
Confidence 48999999999999999999999999999999999987543 35678999999999999999876533 3455689
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCce----eEEee--ecccCCceeEEEecHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEI--ESLFDGIDFSEPLTRARF 154 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i--~~~~~~~~~~~~itr~~f 154 (487)
||.+||+.|.+++.+++ +.... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|
T Consensus 179 GG~~id~~l~~~l~~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 245 (334)
T PRK13927 179 GGDKFDEAIINYVRRNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEI 245 (334)
T ss_pred hHHHHHHHHHHHHHHHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHH
Confidence 99999999999987554 33221 1578999999875432 22322 233455667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--cCCcC-EEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~~~--~~~i~-~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
++++.+.+.++.+.|.++|++++.. ...++ .|+|+||+|++|.++++|++.| +.++....+|+++||+||++++..
T Consensus 246 ~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 246 REALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999987533 22344 5999999999999999999999 577888889999999999999864
No 23
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.96 E-value=1.6e-28 Score=244.03 Aligned_cols=209 Identities=23% Similarity=0.334 Sum_probs=172.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++.+|++.||++++.+++||+|||++|+..... +..++|+|+||||||++++.+++.. ..++..+
T Consensus 107 ~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~-~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~ 180 (335)
T PRK13929 107 SGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVDE-PVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRI 180 (335)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcCC-CceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCC
Confidence 489999999999999999999999999999999999876543 6789999999999999999875432 3456789
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc----eeEEeee--cccCCceeEEEecHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARF 154 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~~~~~~~~~~~itr~~f 154 (487)
||.+||+.|.+++...+ +.... ...||++|+.++... ...+.+. .+..+.+..+.+++++|
T Consensus 181 GG~~id~~l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~ 247 (335)
T PRK13929 181 GGDQLDEDIVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEI 247 (335)
T ss_pred HHHHHHHHHHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHH
Confidence 99999999999987543 33321 167999999998632 2223222 23345667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--CcCCcC-EEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhh
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAGL--EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~~--~~~~i~-~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a 229 (487)
+++|.+.+.++.+.|.+.|+++.. ....++ .|+|+||+|++|.+++++++.| +.++....||+++|+.||+..-
T Consensus 248 ~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 248 QGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 999999999999999999999753 345677 6999999999999999999999 6777778899999999999774
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.96 E-value=1.7e-27 Score=237.13 Aligned_cols=211 Identities=26% Similarity=0.385 Sum_probs=170.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.+|+..||+++++|++.||++++.+++||+|||++|+.... .+..++|||+||||||++++++++.. ..++.++
T Consensus 107 ~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~l 180 (333)
T TIGR00904 107 SGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRV 180 (333)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccc
Confidence 47999999999999999999999999999999999987543 36678999999999999999876533 2456789
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCce-----eEEeee--cccCCceeEEEecHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ-----VRVEIE--SLFDGIDFSEPLTRAR 153 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~--~~~~~~~~~~~itr~~ 153 (487)
||++||+.|++++..++ +.... +..||++|+.++.... ..+.+. ....+.+..+.|++++
T Consensus 181 GG~did~~l~~~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 247 (333)
T TIGR00904 181 GGDEFDEAIINYIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVE 247 (333)
T ss_pred hHHHHHHHHHHHHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHH
Confidence 99999999999987554 32221 2679999999975322 122221 1122344567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCc-CCc-C-EEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhh
Q 011367 154 FEELNNDLFRKTMGPVKKAMEDAGLEK-NQI-D-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 154 fe~~~~~~~~~~~~~i~~~l~~~~~~~-~~i-~-~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
|.+++.+.+.++.+.|.+.|+.++... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++.
T Consensus 248 ~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 248 VREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHh
Confidence 999999999999999999999876432 233 3 7999999999999999999999 67788889999999999999864
Q ss_pred h
Q 011367 231 I 231 (487)
Q Consensus 231 ~ 231 (487)
.
T Consensus 327 ~ 327 (333)
T TIGR00904 327 D 327 (333)
T ss_pred C
Confidence 3
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=6.6e-27 Score=233.57 Aligned_cols=211 Identities=25% Similarity=0.359 Sum_probs=170.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.+|+..||+++.+|++.+|++.+.+++||+|||++|+..... ...++|||+||||||++++..+... ..+...+
T Consensus 109 ~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~-~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~l 182 (335)
T PRK13930 109 SGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTE-PVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRV 182 (335)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCC-CCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCc
Confidence 479999999999999999999999999999999999875443 4567999999999999999876432 2466789
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCce----eEEeee--cccCCceeEEEecHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEIE--SLFDGIDFSEPLTRARF 154 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~--~~~~~~~~~~~itr~~f 154 (487)
||.+||+.|.+++.+++ +.... ...||++|+.++.... ..+.+. ....+.+..+.|++++|
T Consensus 183 GG~~id~~l~~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 249 (335)
T PRK13930 183 AGDEMDEAIVQYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEV 249 (335)
T ss_pred hhHHHHHHHHHHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHH
Confidence 99999999999987653 33221 1578999999975432 122222 23344556788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--cCCcCE-EEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAGLE--KNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~~~--~~~i~~-V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
++++.+.++++.+.|.+.|+.+... ...++. |+|+||+|++|.++++|++.| +.++....+|+.+||+||++.+..
T Consensus 250 ~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 250 REALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986532 233454 999999999999999999999 567777889999999999999864
No 26
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.94 E-value=9.8e-26 Score=212.62 Aligned_cols=169 Identities=24% Similarity=0.321 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 1 MLLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 1 ~~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
.||++.||+++++|++.||++++.+++||.|||++|+.. ..+|+|+||||||+++++.+... . .++..+
T Consensus 70 ~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------~~~vvDiGggtt~i~i~~~G~i~----~-~~~~~~ 138 (239)
T TIGR02529 70 PGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------NGAVVDVGGGTTGISILKKGKVI----Y-SADEPT 138 (239)
T ss_pred CCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------CcEEEEeCCCcEEEEEEECCeEE----E-EEeeec
Confidence 489999999999999999999999999999999998643 25999999999999997643222 2 346779
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHH
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 160 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~ 160 (487)
||++||+.|.+.+ +++. .+||++|+.++. .+++.+++.+
T Consensus 139 GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~~~~----------------------~~~~~~~i~~ 177 (239)
T TIGR02529 139 GGTHMSLVLAGAY--------GISF-----------EEAEEYKRGHKD----------------------EEEIFPVVKP 177 (239)
T ss_pred chHHHHHHHHHHh--------CCCH-----------HHHHHHHHhcCC----------------------HHHHHHHHHH
Confidence 9999999887553 3322 789999987541 3567789999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhh
Q 011367 161 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 161 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~ 227 (487)
+++++.+.+++.|++. .++.|+|+||+|++|.+++.+++.| +.++..+.||++++|.|||+
T Consensus 178 ~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 178 VYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeehhheeec
Confidence 9999999999999863 4679999999999999999999999 67888899999999999986
No 27
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.91 E-value=1.1e-23 Score=202.07 Aligned_cols=170 Identities=28% Similarity=0.381 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcc
Q 011367 2 LLSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG 81 (487)
Q Consensus 2 ~f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 81 (487)
+|+..+|+++.+|++.||+++..+++||.|++.+|... ..+|+|+||||||++++. ++.+ . ..++..+|
T Consensus 98 ~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~~~vvDIGggtt~i~v~~--~g~~--~-~~~~~~~G 166 (267)
T PRK15080 98 GTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------NGAVVDIGGGTTGISILK--DGKV--V-YSADEPTG 166 (267)
T ss_pred CCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------CcEEEEeCCCcEEEEEEE--CCeE--E-EEecccCc
Confidence 67888999999999999999999999999999988543 258999999999999975 3332 1 23567899
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHHH
Q 011367 82 GEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDL 161 (487)
Q Consensus 82 G~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~ 161 (487)
|++||+.|++++ +++ +.+||++|+.++ +++++.++++|+
T Consensus 167 G~~it~~Ia~~l--------~i~-----------~~eAE~lK~~~~----------------------~~~~~~~ii~~~ 205 (267)
T PRK15080 167 GTHMSLVLAGAY--------GIS-----------FEEAEQYKRDPK----------------------HHKEIFPVVKPV 205 (267)
T ss_pred hHHHHHHHHHHh--------CCC-----------HHHHHHHHhccC----------------------CHHHHHHHHHHH
Confidence 999999998774 222 278899998753 357789999999
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhh
Q 011367 162 FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 162 ~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a 229 (487)
++++.+.+++.|+.. .++.|+|+||+|++|.+++.+++.| +.++..+.+|+.++|.|||++|
T Consensus 206 ~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 206 VEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 999999999999863 5789999999999999999999999 6788888999999999999875
No 28
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.91 E-value=9.3e-24 Score=205.44 Aligned_cols=206 Identities=27% Similarity=0.393 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcch
Q 011367 3 LSLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG 82 (487)
Q Consensus 3 f~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 82 (487)
-++.+|+|+.+|+..||...+.|++||.|||+..++.-.. +...||+|+||||||++++...+-. . ......||
T Consensus 104 ~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~-~~g~miVDIG~GtTdiavislggiv--~---s~si~~gG 177 (326)
T PF06723_consen 104 ITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIFE-PRGSMIVDIGGGTTDIAVISLGGIV--A---SRSIRIGG 177 (326)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTS-SS-EEEEEE-SS-EEEEEEETTEEE--E---EEEES-SH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCCC-CCceEEEEECCCeEEEEEEECCCEE--E---EEEEEecC
Confidence 3678999999999999999999999999999999887654 7789999999999999999644322 1 22256899
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc------eeEEeeecccCCceeEEEecHHHHHH
Q 011367 83 EDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------QVRVEIESLFDGIDFSEPLTRARFEE 156 (487)
Q Consensus 83 ~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~~~~~itr~~fe~ 156 (487)
++||++|.+|+.+++ ++.+.. ..||++|+.++... ...+.-.++..|.+..+.|+.+++.+
T Consensus 178 ~~~DeaI~~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ 244 (326)
T PF06723_consen 178 DDIDEAIIRYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVRE 244 (326)
T ss_dssp HHHHHHHHHHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHH
T ss_pred cchhHHHHHHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHH
Confidence 999999999977765 333332 78999999987542 23444446678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcC---Cc--CEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhh
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKN---QI--DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~---~i--~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
.+.+.+.++.+.|+++|++. +++ || +.|+|+||+|+++.+.+.|++.+ +.++....+|..|||.||.....
T Consensus 245 ai~~~~~~I~~~i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 245 AIEPPVDQIVEAIKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999999999999999974 222 22 57999999999999999999999 78899999999999999997653
No 29
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.88 E-value=5.7e-22 Score=200.38 Aligned_cols=193 Identities=23% Similarity=0.332 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHH
Q 011367 7 LRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 86 (487)
Q Consensus 7 qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 86 (487)
.-+.+.+|++.||+++..++.||.|+|++|.... .....++|+|+||||||++++.. +.... .....+||++||
T Consensus 159 ~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-~~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~GG~~it 232 (371)
T TIGR01174 159 ILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-EKELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIGGNHIT 232 (371)
T ss_pred HHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-hhcCCEEEEEeCCCcEEEEEEEC--CEEEE---EeeecchHHHHH
Confidence 4567888999999999999999999999985432 24667999999999999999863 33211 234679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCC------ceeEEeeecccCCceeEEEecHHHHHHHHHH
Q 011367 87 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNND 160 (487)
Q Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~ 160 (487)
+.|.+.+ +. .+.+||++|+.++.. ....+.++... .+....|+|++|++++.+
T Consensus 233 ~~i~~~l--------~~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~ 291 (371)
T TIGR01174 233 KDIAKAL--------RT-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIEA 291 (371)
T ss_pred HHHHHHh--------CC-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHHH
Confidence 9987653 21 137899999999863 23455555443 356679999999999999
Q ss_pred HHHHHHHHHH-HHHHHcCCCcCCcCE-EEEEcCCCCcHHHHHHHHhhcCCCCCCC------------CCCchhHHhhhhh
Q 011367 161 LFRKTMGPVK-KAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVAYGAA 226 (487)
Q Consensus 161 ~~~~~~~~i~-~~l~~~~~~~~~i~~-V~LvGG~s~ip~v~~~l~~~f~~~~~~~------------~~~p~~aVa~GAa 226 (487)
.++++...|+ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+ .++.. .-+|..++|.|.+
T Consensus 292 ~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~ 369 (371)
T TIGR01174 292 RAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTAVGLL 369 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHHHHHH
Confidence 9999999998 999998776 66776 9999999999999999999994 32211 1278899999988
Q ss_pred hh
Q 011367 227 VQ 228 (487)
Q Consensus 227 ~~ 228 (487)
+|
T Consensus 370 ~~ 371 (371)
T TIGR01174 370 LY 371 (371)
T ss_pred hC
Confidence 64
No 30
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.87 E-value=4.8e-21 Score=179.46 Aligned_cols=209 Identities=25% Similarity=0.365 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchh
Q 011367 4 SLFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 83 (487)
Q Consensus 4 ~~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 83 (487)
++.+|+|+++|++.||...+.++.||.|||+..++.-.. +..-+|||+||||||++++.+.+-.. .....+||+
T Consensus 113 T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~e-p~G~mvvDIGgGTTevaVISlggiv~-----~~Sirv~GD 186 (342)
T COG1077 113 TDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIME-PTGSMVVDIGGGTTEVAVISLGGIVS-----SSSVRVGGD 186 (342)
T ss_pred cHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccC-CCCCEEEEeCCCceeEEEEEecCEEE-----EeeEEEecc
Confidence 578999999999999999999999999999987665443 55679999999999999999876542 223569999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCC--------ceeEEeeecccCCceeEEEecHHHHH
Q 011367 84 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ--------HQVRVEIESLFDGIDFSEPLTRARFE 155 (487)
Q Consensus 84 ~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~--------~~~~i~i~~~~~~~~~~~~itr~~fe 155 (487)
.||+++.+|+.+++ ++-+.. ..+|++|+..... .+..+.-.++..|.+-.++++..+..
T Consensus 187 ~~De~Ii~yvr~~~----nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~ 253 (342)
T COG1077 187 KMDEAIIVYVRKKY----NLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIA 253 (342)
T ss_pred hhhHHHHHHHHHHh----CeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHH
Confidence 99999999976654 444433 5688999887533 22455556677888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCcCCcCE-EEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhc
Q 011367 156 ELNNDLFRKTMGPVKKAMEDA--GLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 232 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~--~~~~~~i~~-V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~ 232 (487)
+.+++.+++|.+.++..|++. .+..+-++. ++|+||+|.+..+.+.|.+.. +..+....+|..|||+|+.+....+
T Consensus 254 eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 254 EALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhh
Confidence 999999999999999999985 333344555 999999999999999999988 6778888999999999999877654
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.86 E-value=1.2e-20 Score=193.01 Aligned_cols=197 Identities=21% Similarity=0.292 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhH
Q 011367 5 LFLRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 84 (487)
Q Consensus 5 ~~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 84 (487)
+.+|.. ..|++.||+++..++.||.|+|.++... ..++..++|+|+||||||++++. ++.+. ......+||++
T Consensus 166 ~~~~~~-~~a~~~aGl~v~~iv~ep~Aaa~a~l~~-~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~ 238 (420)
T PRK09472 166 DMAKNI-VKAVERCGLKVDQLIFAGLASSYAVLTE-DERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNV 238 (420)
T ss_pred HHHHHH-HHHHHHcCCeEeeEEehhhHHHHHhcCh-hhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHH
Confidence 445555 4699999999999999999999998544 33467899999999999999997 44322 23346799999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCC------ceeEEeeecccCCceeEEEecHHHHHHHH
Q 011367 85 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELN 158 (487)
Q Consensus 85 id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~~fe~~~ 158 (487)
|++.|+..+ ++. ...||++|+.+... ....+.++...... ...++|.+|.+++
T Consensus 239 it~dIa~~l--------~i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAF--------GTP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHh--------CcC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHH
Confidence 999987653 221 27899999775432 23455555433222 2478999999999
Q ss_pred HHHHHHHHHHHHH-------HHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCC------------CCCchh
Q 011367 159 NDLFRKTMGPVKK-------AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDE 219 (487)
Q Consensus 159 ~~~~~~~~~~i~~-------~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~------------~~~p~~ 219 (487)
.+.++++++.|++ .|..+++....++.|+|+||+|++|.|++++++.|+ .++.. ..+|..
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ 376 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYY 376 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHH
Confidence 9977777777765 445667777789999999999999999999999994 33221 248999
Q ss_pred HHhhhhhhhhh
Q 011367 220 AVAYGAAVQGG 230 (487)
Q Consensus 220 aVa~GAa~~a~ 230 (487)
|+|.|.++++.
T Consensus 377 ata~Gl~~~~~ 387 (420)
T PRK09472 377 STAVGLLHYGK 387 (420)
T ss_pred HHHHHHHHHhh
Confidence 99999999976
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.72 E-value=1.2e-16 Score=159.62 Aligned_cols=196 Identities=26% Similarity=0.394 Sum_probs=157.5
Q ss_pred HHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHH
Q 011367 9 QATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 88 (487)
Q Consensus 9 ~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 88 (487)
+-+.+|.+.||+++..++.+|.|+|.+. +..+.+...++++|+||||||+++++-+... ..+..++||++++..
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~-L~~dEkelGv~lIDiG~GTTdIai~~~G~l~-----~~~~ipvgG~~vT~D 241 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAV-LTEDEKELGVALIDIGGGTTDIAIYKNGALR-----YTGVIPVGGDHVTKD 241 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhc-cCcccHhcCeEEEEeCCCcEEEEEEECCEEE-----EEeeEeeCccHHHHH
Confidence 5678899999999999999999999886 4555568899999999999999999733322 244478999999999
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc------eeEEeeecccCCceeEEEecHHHHHHHHHHHH
Q 011367 89 VMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------QVRVEIESLFDGIDFSEPLTRARFEELNNDLF 162 (487)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~~ 162 (487)
|+.-|. .+. ..||++|+...... ...+.++...+.. ...+||..+.+++++.+
T Consensus 242 Ia~~l~--------t~~-----------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~ 300 (418)
T COG0849 242 IAKGLK--------TPF-----------EEAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEIIEARV 300 (418)
T ss_pred HHHHhC--------CCH-----------HHHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHHHHhhH
Confidence 987642 222 78999999875432 3345555443333 66899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCC--CC----------CCCchhHHhhhhhhhhh
Q 011367 163 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP--NK----------GVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 163 ~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~--~~----------~~~p~~aVa~GAa~~a~ 230 (487)
.+++.+++..|++.++...-...|+|+||++++|.+.+..++.|+ .++ .. ..+|..+.|.|..++++
T Consensus 301 ~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~ 379 (418)
T COG0849 301 EEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGA 379 (418)
T ss_pred HHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHHHHHh
Confidence 999999999999999887778999999999999999999999994 322 11 24689999999999987
Q ss_pred hc
Q 011367 231 IL 232 (487)
Q Consensus 231 ~~ 232 (487)
..
T Consensus 380 ~~ 381 (418)
T COG0849 380 LM 381 (418)
T ss_pred hc
Confidence 53
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.37 E-value=9.1e-13 Score=115.06 Aligned_cols=159 Identities=28% Similarity=0.402 Sum_probs=122.3
Q ss_pred HHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHH
Q 011367 13 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 92 (487)
Q Consensus 13 ~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 92 (487)
+..+.||++++.+++||+|||.-..++. -.|+|+|||||-+|+++-.+-.| ..|...||..++..|+-+
T Consensus 114 NViESAGlevl~vlDEPTAaa~vL~l~d------g~VVDiGGGTTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~ 182 (277)
T COG4820 114 NVIESAGLEVLHVLDEPTAAADVLQLDD------GGVVDIGGGTTGISIVKKGKVIY-----SADEPTGGTHMTLVLAGN 182 (277)
T ss_pred EeecccCceeeeecCCchhHHHHhccCC------CcEEEeCCCcceeEEEEcCcEEE-----eccCCCCceeEEEEEecc
Confidence 4457899999999999999996554443 26999999999999998655443 456789999888776544
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 011367 93 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKA 172 (487)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~ 172 (487)
|++++ .+||..|+.--.. ++.--.+.|+++++...+.+.
T Consensus 183 --------ygi~~-----------EeAE~~Kr~~k~~----------------------~Eif~~v~PV~eKMAeIv~~h 221 (277)
T COG4820 183 --------YGISL-----------EEAEQYKRGHKKG----------------------EEIFPVVKPVYEKMAEIVARH 221 (277)
T ss_pred --------cCcCH-----------hHHHHhhhccccc----------------------hhcccchhHHHHHHHHHHHHH
Confidence 55554 6777777652111 111234679999999999999
Q ss_pred HHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhh
Q 011367 173 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 173 l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a 229 (487)
|+..+ +..+.|+||+|.-|.+.+..++.| +.++..+..|....-.|-|+.+
T Consensus 222 ie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 222 IEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred hccCC-----CcceEEecccccCccHHHHHHHHh-ccccccCCCcceechhhhhhcc
Confidence 88644 677999999999999999999999 7888888888887777777544
No 34
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.33 E-value=2.9e-11 Score=120.48 Aligned_cols=178 Identities=19% Similarity=0.257 Sum_probs=121.8
Q ss_pred eeeeechhHHHHHHhccccC-------CCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHHHH
Q 011367 22 VARIINEPTAAAIAYGLDKK-------GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 94 (487)
Q Consensus 22 ~~~li~Ep~Aaa~~y~~~~~-------~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~ 94 (487)
.+.+++||.+|.+.+..+.. .....++|+|+|+||||++++. ++.+ +....+....|..++.+.|.+++.
T Consensus 155 ~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~ 231 (344)
T PRK13917 155 GVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHIS 231 (344)
T ss_pred EEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHH
Confidence 36788999999887765432 1345789999999999999986 4433 223344467899999888887764
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 011367 95 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAME 174 (487)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~ 174 (487)
.+ .++..+. . ..++++ |... .+.+ ..+.. +.+ ++++.++++.+++++...|...+.
T Consensus 232 ~~---~~~~~~~--~-------~~ie~~---l~~g---~i~~---~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~ 287 (344)
T PRK13917 232 KK---EEGASIT--P-------YMLEKG---LEYG---ACKL---NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVG 287 (344)
T ss_pred hh---CCCCCCC--H-------HHHHHH---HHcC---cEEe---CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 2343332 1 112222 2111 1111 11112 223 456778899999999988888875
Q ss_pred HcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccC
Q 011367 175 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 234 (487)
Q Consensus 175 ~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~ 234 (487)
. ..+++.|+|+||++++ +++.|++.||. +....||+.|.|+|...+|..+.+
T Consensus 288 ~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 288 N----INSFDRVIVTGGGANI--FFDSLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred c----cCCCCEEEEECCcHHH--HHHHHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 3 3578999999999987 88999999964 356679999999999999976553
No 35
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.24 E-value=3.3e-10 Score=113.86 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHcCCceeeeechhHHHHHHhc-----cccCCCCc-EEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCC
Q 011367 6 FLRQATKDAGIIAGLNVARIINEPTAAAIAYG-----LDKKGGEK-NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH 79 (487)
Q Consensus 6 ~qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~-----~~~~~~~~-~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 79 (487)
..-+.+.++++.||+++..+..+|.|.+-.+. ........ .++++|+|+++|+++++.-+...+ .....
T Consensus 143 ~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~i~ 217 (348)
T TIGR01175 143 EVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TREVP 217 (348)
T ss_pred HHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEEee
Confidence 34567889999999999999999999987663 22222233 499999999999999996443332 34467
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHH
Q 011367 80 LGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNN 159 (487)
Q Consensus 80 lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~ 159 (487)
+||.++++.|.+. ++++. ..||+.|...+.... .-.++++
T Consensus 218 ~G~~~i~~~i~~~--------~~~~~-----------~~Ae~~k~~~~~~~~---------------------~~~~~~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRA--------YGLNP-----------EEAGEAKQQGGLPLL---------------------YDPEVLR 257 (348)
T ss_pred chHHHHHHHHHHH--------cCCCH-----------HHHHHHHhcCCCCCc---------------------hhHHHHH
Confidence 9999999988643 33332 678888775322110 0124567
Q ss_pred HHHHHHHHHHHHHHHHc--CCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCC-------------------CCCch
Q 011367 160 DLFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK-------------------GVNPD 218 (487)
Q Consensus 160 ~~~~~~~~~i~~~l~~~--~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~-------------------~~~p~ 218 (487)
+.++++...|.+.|... ......++.|+|+||++++|.+.+.+.+.|+ ..+.. ...|.
T Consensus 258 ~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~-~~v~~~~P~~~~~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01175 258 RFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG-LPTEVANPFALMALDAKVDAGRLAVDAPA 336 (348)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC-CCeEecChHHhcccCccCCHHHHHhhhHH
Confidence 77777777788877643 2233468999999999999999999999983 32211 13456
Q ss_pred hHHhhhhhhhh
Q 011367 219 EAVAYGAAVQG 229 (487)
Q Consensus 219 ~aVa~GAa~~a 229 (487)
.++|.|+|+++
T Consensus 337 ~~~a~Glalr~ 347 (348)
T TIGR01175 337 LMTALGLALRG 347 (348)
T ss_pred HHHHhhHhhcC
Confidence 77778877654
No 36
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.20 E-value=6e-11 Score=120.25 Aligned_cols=209 Identities=20% Similarity=0.144 Sum_probs=135.6
Q ss_pred CCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 2 LLSLFLRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 2 ~f~~~qR~a~~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
+++..+|+.+.+. .+..|+..+.++++|.+|+++++. .+.+|+|+|+++|+++.+.- +.. +.......++
T Consensus 105 ~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~ 175 (371)
T cd00012 105 LNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDL 175 (371)
T ss_pred CCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccc
Confidence 4566777777664 666899999999999999998864 57899999999999988863 321 1222334679
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCce---eE----------Ee-eecccCCceeE
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ---VR----------VE-IESLFDGIDFS 146 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~----------i~-i~~~~~~~~~~ 146 (487)
||.++|+.|.+++..... ..+.. .-...++.+|+.+..... .. .. .-.+-++. .
T Consensus 176 GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~ 243 (371)
T cd00012 176 AGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGR--T 243 (371)
T ss_pred cHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCe--E
Confidence 999999999988754321 01111 112346666666532110 00 00 00111222 3
Q ss_pred EEecHHHH---HHHHHH-----HHHHHHHHHHHHHHHcCC--CcCCcCEEEEEcCCCCcHHHHHHHHhhcC----C----
Q 011367 147 EPLTRARF---EELNND-----LFRKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFD----G---- 208 (487)
Q Consensus 147 ~~itr~~f---e~~~~~-----~~~~~~~~i~~~l~~~~~--~~~~i~~V~LvGG~s~ip~v~~~l~~~f~----~---- 208 (487)
+.++.+.| |-++.| ....+.+.|.++|..+.. ...-.+.|+|+||+|++|.+.++|.+.+. .
T Consensus 244 i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~ 323 (371)
T cd00012 244 IKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDT 323 (371)
T ss_pred EEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccce
Confidence 45555544 223333 223678888888887532 23346889999999999999999988773 1
Q ss_pred -CCCCCCCCchhHHhhhhhhhhhh
Q 011367 209 -KEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 209 -~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
..+....+|..++-.||+++|..
T Consensus 324 ~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 324 KVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EEEEccCCCccccEEeCchhhcCc
Confidence 12345568999999999999864
No 37
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.11 E-value=5.6e-10 Score=111.59 Aligned_cols=175 Identities=22% Similarity=0.315 Sum_probs=112.6
Q ss_pred HHHHHHHHHcCCceeeeechhHHHHHHhcccc----C-CCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchh
Q 011367 9 QATKDAGIIAGLNVARIINEPTAAAIAYGLDK----K-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 83 (487)
Q Consensus 9 ~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~----~-~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 83 (487)
+...++++.|||++..+--+|.|.+-.|.... . .....++++|+|+.++.++++. ++.+.. .+...+||.
T Consensus 139 ~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~~G~~ 213 (340)
T PF11104_consen 139 ESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIPIGGN 213 (340)
T ss_dssp HHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES-SHH
T ss_pred HHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEeeCHH
Confidence 45678899999999989888888766554421 1 1346899999999999999987 443221 334679999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHHHHH
Q 011367 84 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFR 163 (487)
Q Consensus 84 ~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~~~ 163 (487)
++++.|++.+ +++. .+||..|..-+... +...+.+.+.++
T Consensus 214 ~l~~~i~~~~--------~i~~-----------~~Ae~~k~~~~l~~---------------------~~~~~~l~~~~~ 253 (340)
T PF11104_consen 214 DLTEAIAREL--------GIDF-----------EEAEELKRSGGLPE---------------------EYDQDALRPFLE 253 (340)
T ss_dssp HHHHHHHHHT--------T--H-----------HHHHHHHHHT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHhc--------CCCH-----------HHHHHHHhcCCCCc---------------------chHHHHHHHHHH
Confidence 9999988663 3222 56677776521101 233566777777
Q ss_pred HHHHHHHHHHHH--cCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCC---------CCCC----------CchhHHh
Q 011367 164 KTMGPVKKAMED--AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP---------NKGV----------NPDEAVA 222 (487)
Q Consensus 164 ~~~~~i~~~l~~--~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~---------~~~~----------~p~~aVa 222 (487)
++..-|.+.++. .......|+.|+|+||++++|.+.+.|.+.+ +.++ ..+. .|..++|
T Consensus 254 ~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA 332 (340)
T PF11104_consen 254 ELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVA 332 (340)
T ss_dssp HHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhHHHHH
Confidence 888888887773 2234568999999999999999999999998 3321 1112 3778999
Q ss_pred hhhhhhh
Q 011367 223 YGAAVQG 229 (487)
Q Consensus 223 ~GAa~~a 229 (487)
.|.|+..
T Consensus 333 ~GLAlR~ 339 (340)
T PF11104_consen 333 LGLALRG 339 (340)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 9999864
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.09 E-value=3e-09 Score=105.35 Aligned_cols=192 Identities=19% Similarity=0.203 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHc---------CCceeeeechhHHHHHHhccccC---CCCcEEEEEEeCCCeEEEEEEEEeCCeEEEE
Q 011367 5 LFLRQATKDAGIIA---------GLNVARIINEPTAAAIAYGLDKK---GGEKNILVFDLGGGTFDVSILTIDNGVFEVL 72 (487)
Q Consensus 5 ~~qR~a~~~Aa~~A---------Gl~~~~li~Ep~Aaa~~y~~~~~---~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 72 (487)
..||+.+++...-. -++.+.+++||.+|.+.+..+.. .....++|+|+|++|||+.++. +..+ +.
T Consensus 115 ~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~--~~~~-~~ 191 (320)
T TIGR03739 115 TTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVAR--GMRL-VQ 191 (320)
T ss_pred HHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehcc--CCEE-cc
Confidence 34677777765421 22447789999999888755321 1456789999999999997773 4443 34
Q ss_pred EecCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHH
Q 011367 73 STNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRA 152 (487)
Q Consensus 73 ~~~~~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~ 152 (487)
...+....|-.++-+.|.+.+. ++++.....+... .+.+ |.......+ .+.. +.|+ +
T Consensus 192 ~~s~s~~~G~~~~~~~I~~~i~----~~~g~~~~~~~~~-------i~~~---l~~g~~~~~------~gk~--~di~-~ 248 (320)
T TIGR03739 192 KRSGSVNGGMSDIYRLLAAEIS----KDIGTPAYRDIDR-------IDLA---LRTGKQPRI------YQKP--VDIK-R 248 (320)
T ss_pred cccCCchhHHHHHHHHHHHHHH----hhcCCCCccCHHH-------HHHH---HHhCCceee------ccee--cCch-H
Confidence 4455567888777777666554 4455441111111 1111 111110000 1111 1222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhh
Q 011367 153 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 153 ~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a 229 (487)
.++ .....+.++...+.+.+. ...+++.|+|+||++. .+++.|++.||...+....||..|.|+|-..++
T Consensus 249 ~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 249 CLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 122 333344444444444332 1346899999999998 478999999977665567899999999988765
No 39
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.06 E-value=4e-10 Score=114.33 Aligned_cols=205 Identities=19% Similarity=0.173 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcc
Q 011367 3 LSLFLRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG 81 (487)
Q Consensus 3 f~~~qR~a~~~Aa-~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 81 (487)
.+..+|+.+.+.+ +..|+.-+.++++|.+|+++++ ..+.+|+|+|+++|+++.+. ++.. +........+|
T Consensus 106 ~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~G 176 (373)
T smart00268 106 NPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIA 176 (373)
T ss_pred CCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCc
Confidence 4578888888886 4679999999999999999886 45789999999999999987 3321 22222335799
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc-------------------eeEEeeecccCC
Q 011367 82 GEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-------------------QVRVEIESLFDG 142 (487)
Q Consensus 82 G~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-------------------~~~i~i~~~~~~ 142 (487)
|.++|+.|.+++...-. ++. .. .-...++.+|+.+.... ...+. +.+|
T Consensus 177 G~~l~~~l~~~l~~~~~-~~~--~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg 243 (373)
T smart00268 177 GRDLTDYLKELLSERGY-QFN--SS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDG 243 (373)
T ss_pred HHHHHHHHHHHHHhcCC-CCC--cH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCC
Confidence 99999999988755100 111 10 11233555555542210 01111 1233
Q ss_pred ceeEEEecHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--cCCcCEEEEEcCCCCcHHHHHHHHhhc----CC
Q 011367 143 IDFSEPLTRARF---EELNNDL-----FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYF----DG 208 (487)
Q Consensus 143 ~~~~~~itr~~f---e~~~~~~-----~~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~ip~v~~~l~~~f----~~ 208 (487)
..+ .+..+.| |-++.|. ...+.+.|.++|..+..+ ..-.+.|+|+||+|++|.+.++|.+.+ |.
T Consensus 244 ~~~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~ 321 (373)
T smart00268 244 NTI--KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPK 321 (373)
T ss_pred CEE--EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCC
Confidence 333 3333332 2233331 236677788887765322 222467999999999999999998776 21
Q ss_pred ---CCCCCCCCchhHHhhhhhhhhhh
Q 011367 209 ---KEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 209 ---~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
..+..+.+|..++=.||+++|..
T Consensus 322 ~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 322 KLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred CceeEEecCCCCccceEeCcccccCc
Confidence 12334456778888898888754
No 40
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.92 E-value=4.5e-09 Score=103.79 Aligned_cols=174 Identities=20% Similarity=0.330 Sum_probs=98.2
Q ss_pred ceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHh
Q 011367 21 NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKK 100 (487)
Q Consensus 21 ~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~ 100 (487)
..+.+++||.||.+.+..... +...+||+|+||+|+|++++. ++.-.+....+...+|-..+-.++.+.+..
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~----- 212 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRS----- 212 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT------
T ss_pred eeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHH-----
Confidence 457889999999998865533 356799999999999999885 222222334455678988887777666543
Q ss_pred cCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 011367 101 HGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK 180 (487)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~ 180 (487)
.+... +......+..... -+..++. .....+ ..+.+.++++..+.++.+.|.+.+.. .
T Consensus 213 ~~~~~--s~~~~~~ii~~~~-~~~~~~~----------~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~----~ 270 (318)
T PF06406_consen 213 AGIDT--SELQIDDIIRNRK-DKGYLRQ----------VINDED-----VIDDVSEVIEEAVEELINRILRELGD----F 270 (318)
T ss_dssp -SBHH--HHHHHHHHHHTTT--HHHHHH----------HSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred hcCCC--cHHHHHHHHHhhh-ccceecc----------cccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh----h
Confidence 11111 0001111111000 0000000 000000 12344455555555555555555432 3
Q ss_pred CCcCEEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCCCchhHHhhhhh
Q 011367 181 NQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAA 226 (487)
Q Consensus 181 ~~i~~V~LvGG~s~ip~v~~~l~~~f~--~~~~~~~~~p~~aVa~GAa 226 (487)
.+++.|+||||++.+ +.+.|++.|+ ...+...-||+.|-|+|-+
T Consensus 271 ~~~~~I~~vGGGA~l--l~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 271 SDIDRIFFVGGGAIL--LKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-SEEEEESTTHHH--HHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ccCCeEEEECCcHHH--HHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 568899999999875 8899999985 3467778899999999964
No 41
>PTZ00280 Actin-related protein 3; Provisional
Probab=98.81 E-value=8.4e-08 Score=98.54 Aligned_cols=192 Identities=18% Similarity=0.143 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHHc-CCceeeeechhHHHHHHhccccCC----CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecC
Q 011367 2 LLSLFLRQATKDAGIIA-GLNVARIINEPTAAAIAYGLDKKG----GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNG 76 (487)
Q Consensus 2 ~f~~~qR~a~~~Aa~~A-Gl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~ 76 (487)
++...+|+.+.+.+-.. |..-+.+...|.+|++++...... ...+-||+|+|.|+|+++.+.- |.. +.....
T Consensus 112 ~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~--G~~-l~~~~~ 188 (414)
T PTZ00280 112 MNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD--GYV-IGSSIK 188 (414)
T ss_pred CCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC--CEE-cccceE
Confidence 35667888887776544 888889999999999876332211 1235699999999999987763 321 111122
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc-----------------eeEEeeecc
Q 011367 77 DTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-----------------QVRVEIESL 139 (487)
Q Consensus 77 ~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~i~i~~~ 139 (487)
...+||.++|+.|.++|.++ +..+... .....++.+|+.++... ...+..+..
T Consensus 189 ~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~ 258 (414)
T PTZ00280 189 HIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNS 258 (414)
T ss_pred EecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCC
Confidence 35799999999999887542 1112111 11234666666654311 011222222
Q ss_pred cCCceeEEEecHHHHH---HHHHHHH------HHHHHHHHHHHHHcCCC--cCCcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 140 FDGIDFSEPLTRARFE---ELNNDLF------RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 140 ~~~~~~~~~itr~~fe---~~~~~~~------~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
..+....+.|..+.|. -++.|-+ ..+.+.|.+.|.++..+ ..-.+.|+|+||+|.+|.+.++|.+.+
T Consensus 259 ~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 259 VTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred CCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 2244456777777764 2444532 14567777777765432 233577999999999999999998877
No 42
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.64 E-value=1e-06 Score=83.77 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=119.4
Q ss_pred HHHHHHHHcCCceeeeechhHHHHHHhccccC-----CCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhH
Q 011367 10 ATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-----GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 84 (487)
Q Consensus 10 a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~-----~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 84 (487)
.-.+|.++|||++.-+--|..|.--+|..-.. ....+++|+|+|+..+.+.++.-+...| ..+..+||+.
T Consensus 153 ~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~~Q 227 (354)
T COG4972 153 SRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGTDQ 227 (354)
T ss_pred HHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCcHHH
Confidence 34679999999999888999998777752111 1233479999999999999998665554 4557899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHHHHHH
Q 011367 85 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRK 164 (487)
Q Consensus 85 id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~~~~ 164 (487)
++..+.+. |+++. ..++.+|+...... +.-.++..+++..
T Consensus 228 lt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~f~~~ 267 (354)
T COG4972 228 LTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRPFLGE 267 (354)
T ss_pred HHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHHHHHH
Confidence 99887654 45443 45666676543222 2334677888888
Q ss_pred HHHHHHHHHHHc--CCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhh
Q 011367 165 TMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGA 225 (487)
Q Consensus 165 ~~~~i~~~l~~~--~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GA 225 (487)
+.+.|.+.|+.. .-...+|+.|+|.||++.+-.+.+.+.+.++ .. ....||-...+.++
T Consensus 268 l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~-~~-t~vanPf~~~~~~~ 328 (354)
T COG4972 268 LTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS-IP-TEVANPFAYMALNV 328 (354)
T ss_pred HHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC-CC-eEeeCHHHHHhhhh
Confidence 888888888753 2345679999999999999999999999883 22 22345544443333
No 43
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=98.62 E-value=7.6e-08 Score=98.42 Aligned_cols=216 Identities=18% Similarity=0.203 Sum_probs=125.1
Q ss_pred CCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 2 LLSLFLRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 2 ~f~~~qR~a~~~Aa-~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
+++..+|+.+.+.+ +.-|+.-+.++++|.+|+++++.. +-||+|+|.+.|.|+.+. +|.. +........+
T Consensus 104 ~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~------tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~ 174 (393)
T PF00022_consen 104 FNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT------TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPI 174 (393)
T ss_dssp T--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS------SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-
T ss_pred cCCchhhhhhhhhhhcccccceeeeeecccccccccccc------cccccccceeeeeeeeee--eccc-cccccccccc
Confidence 45667777666654 456889999999999999888644 459999999999988774 3321 1112223579
Q ss_pred chhHHHHHHHHHHHHH-HHH--hcCCCCc----cCHHHHHHHHHHHHHHHHHcc---------------CCceeEEeeec
Q 011367 81 GGEDFDQRVMEYFIKL-IKK--KHGKDIS----KDKRAIGKLRREAERAKRALS---------------SQHQVRVEIES 138 (487)
Q Consensus 81 GG~~id~~l~~~~~~~-~~~--~~~~~~~----~~~~~~~~L~~~~e~~K~~Ls---------------~~~~~~i~i~~ 138 (487)
||.++++.|.+.+..+ +.. .+..... ...-....-...++.+|+.+. ......+.++
T Consensus 175 GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP- 253 (393)
T PF00022_consen 175 GGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP- 253 (393)
T ss_dssp SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T-
T ss_pred cHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc-
Confidence 9999999998887763 110 0000000 000000111222334444431 1122223222
Q ss_pred ccCCceeEEEecHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCc--CCcCEEEEEcCCCCcHHHHH
Q 011367 139 LFDGIDFSEPLTRARFEELNNDLFR----------------KTMGPVKKAMEDAGLEK--NQIDEIVLVGGSTRIPKVQQ 200 (487)
Q Consensus 139 ~~~~~~~~~~itr~~fe~~~~~~~~----------------~~~~~i~~~l~~~~~~~--~~i~~V~LvGG~s~ip~v~~ 200 (487)
++. .+.+..+.| .+.+.++. .+.+.|.+++..+..+. .-.+.|+|+||+|++|.+.+
T Consensus 254 --dg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~e 328 (393)
T PF00022_consen 254 --DGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKE 328 (393)
T ss_dssp --TSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHH
T ss_pred --ccc--ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHH
Confidence 333 445555544 22333322 57778888887764332 22478999999999999999
Q ss_pred HHHhhcCC-------CCCCCCC-CchhHHhhhhhhhhhhc
Q 011367 201 LLKDYFDG-------KEPNKGV-NPDEAVAYGAAVQGGIL 232 (487)
Q Consensus 201 ~l~~~f~~-------~~~~~~~-~p~~aVa~GAa~~a~~~ 232 (487)
+|...+.. .++..+. +|..++=.||+++|..-
T Consensus 329 RL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 329 RLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred HHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 99877622 1233444 89999999999999753
No 44
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.61 E-value=1e-06 Score=84.07 Aligned_cols=189 Identities=19% Similarity=0.199 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHcCCc---------------e----eeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEe
Q 011367 5 LFLRQATKDAGIIAGLN---------------V----ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID 65 (487)
Q Consensus 5 ~~qR~a~~~Aa~~AGl~---------------~----~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 65 (487)
..-+++++++...+|++ . -..++|.+|-+....+-.. ..=.|+|+||..+-+..+.
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~~~v~~~~~~~~ei~~~~~g~~~~~~---~~~~vidiGgqd~k~i~~~-- 109 (248)
T TIGR00241 35 EETARAILEALKEAGIGLEPIDKIVATGYGRHKVGFADKIVTEISCHGKGANYLAP---EARGVIDIGGQDSKVIKID-- 109 (248)
T ss_pred HHHHHHHHHHHHHcCCChhheeEEEEECCCcccccccCCceEEhhHHHHHHHHHCC---CCCEEEEecCCeeEEEEEC--
Confidence 33456777777666652 1 1356777776554322222 2225999999988888887
Q ss_pred CCeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHc----cCCceeEEeeec-cc
Q 011367 66 NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRAL----SSQHQVRVEIES-LF 140 (487)
Q Consensus 66 ~~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L----s~~~~~~i~i~~-~~ 140 (487)
++...-.........|+..|.+.+++. +++++ .+++.++..- .-+..+.+..+. ..
T Consensus 110 ~g~~~~~~~n~~ca~Gtg~f~e~~a~~--------l~~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi 170 (248)
T TIGR00241 110 DGKVDDFTMNDKCAAGTGRFLEVTARR--------LGVSV-----------EELGSLAEKADRKAKISSMCTVFAESELI 170 (248)
T ss_pred CCcEeeeeecCcccccccHHHHHHHHH--------cCCCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHH
Confidence 555444445555667888887776655 34432 3333333331 111223332210 00
Q ss_pred CCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcC-EEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchh
Q 011367 141 DGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDE 219 (487)
Q Consensus 141 ~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~-~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~ 219 (487)
... ....+ .++++..+++.+...+.+.+...+ ++ .|+|+||.+++|++.+.+.+.+ +.++..+.+|..
T Consensus 171 ~~l--~~g~~---~~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~ 239 (248)
T TIGR00241 171 SLL--AAGVK---KEDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQI 239 (248)
T ss_pred HHH--HCCCC---HHHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccH
Confidence 000 00122 246667777777777777665432 44 7999999999999999999999 678888889999
Q ss_pred HHhhhhhhh
Q 011367 220 AVAYGAAVQ 228 (487)
Q Consensus 220 aVa~GAa~~ 228 (487)
+.|+|||+.
T Consensus 240 ~~AlGaAl~ 248 (248)
T TIGR00241 240 VGAVGAALL 248 (248)
T ss_pred HHHHHHHhC
Confidence 999999973
No 45
>PTZ00281 actin; Provisional
Probab=98.47 E-value=9.2e-07 Score=89.61 Aligned_cols=206 Identities=17% Similarity=0.168 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 2 LLSLFLRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 2 ~f~~~qR~a~~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
++...+|+.+.+. .+..+..-+.+...|.+++++++. .+-+|+|+|.+.|.++-+.-+-. +........+
T Consensus 111 ~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~PV~dG~~---~~~~~~~~~~ 181 (376)
T PTZ00281 111 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVMDSGDGVSHTVPIYEGYA---LPHAILRLDL 181 (376)
T ss_pred CCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------ceEEEEECCCceEEEEEEEeccc---chhheeeccC
Confidence 3456777777664 455688888899999999987653 36699999999999886653322 1122223579
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc----------------eeEEeeecccCCce
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------------QVRVEIESLFDGID 144 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~i~i~~~~~~~~ 144 (487)
||.++++.|.+.|..+ +..+.. ... ...++.+|+.++... ...+. +-+|..
T Consensus 182 GG~~lt~~L~~lL~~~-----~~~~~~-~~~----~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~---LPdg~~ 248 (376)
T PTZ00281 182 AGRDLTDYMMKILTER-----GYSFTT-TAE----REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE---LPDGQV 248 (376)
T ss_pred cHHHHHHHHHHHHHhc-----CCCCCc-HHH----HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE---CCCCCE
Confidence 9999999988876432 111111 100 123556666643211 01111 223332
Q ss_pred eEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCcCEEEEEcCCCCcHHHHHHHHhhc----CC--
Q 011367 145 FSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYF----DG-- 208 (487)
Q Consensus 145 ~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~ip~v~~~l~~~f----~~-- 208 (487)
+.|..+.| |-++.|.+ ..+.+.|.+.+..+..+ ..-.+.|+|+||+|.+|.+.++|...+ |.
T Consensus 249 --i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~ 326 (376)
T PTZ00281 249 --ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTM 326 (376)
T ss_pred --EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCc
Confidence 44555444 33444432 24566777777765322 222478999999999999999988766 21
Q ss_pred -CCCCCCCCchhHHhhhhhhhhhh
Q 011367 209 -KEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 209 -~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
.++..+.++..++=+|++++|..
T Consensus 327 ~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 327 KIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred ceEEecCCCCceeEEECcccccCc
Confidence 12344456778888899988863
No 46
>PTZ00004 actin-2; Provisional
Probab=98.43 E-value=1.8e-06 Score=87.54 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 2 LLSLFLRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 2 ~f~~~qR~a~~~Aa-~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
++...+|+.+.+.+ +.-|+..+.+.++|.+|+++++. .+-+|+|+|.+.|+++.+. +|.. +.......++
T Consensus 111 ~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~ 181 (378)
T PTZ00004 111 LNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDV 181 (378)
T ss_pred CCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ceEEEEECCCCcEEEEEEE--CCEE-eecceeeecc
Confidence 35567777666654 55788989999999999987753 3569999999999998775 2321 1222233579
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc-----------------eeEEeeecccCCc
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-----------------QVRVEIESLFDGI 143 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~i~i~~~~~~~ 143 (487)
||.++++.|.+.+..+ +..+... . -...++.+|+.++... ...+. +-+|.
T Consensus 182 GG~~lt~~L~~lL~~~-----~~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~ 248 (378)
T PTZ00004 182 AGRDLTEYMMKILHER-----GTTFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE---LPDGT 248 (378)
T ss_pred cHHHHHHHHHHHHHhc-----CCCCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE---CCCCC
Confidence 9999999998886432 1111111 0 0122445555542110 11122 22333
Q ss_pred eeEEEecHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC--cCCcCEEEEEcCCCCcHHHHHHHHhhcC----C
Q 011367 144 DFSEPLTRARF---EELNNDL------FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD----G 208 (487)
Q Consensus 144 ~~~~~itr~~f---e~~~~~~------~~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~ip~v~~~l~~~f~----~ 208 (487)
. +.|..+.| |-++.|- ...+.+.|.+++.++..+ ..-...|+|+||+|.+|.+.++|...+. .
T Consensus 249 ~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~ 326 (378)
T PTZ00004 249 I--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPS 326 (378)
T ss_pred E--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCC
Confidence 3 34455554 2355553 234567777777765432 2234789999999999999999987662 1
Q ss_pred ---CCCCCCCCchhHHhhhhhhhhhh
Q 011367 209 ---KEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 209 ---~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
.++..+.++..++=.||+++|..
T Consensus 327 ~~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 327 TMKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred CccEEEecCCCCceeEEECcccccCc
Confidence 12334456778888888888753
No 47
>PTZ00452 actin; Provisional
Probab=98.42 E-value=3.8e-06 Score=84.99 Aligned_cols=205 Identities=18% Similarity=0.173 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 2 LLSLFLRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 2 ~f~~~qR~a~~~Aa-~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
+.+..+|+.+.+.+ +.-+...+.+.+.|.+++++++. .+-||+|+|.|.+.++-+. +|.. +........+
T Consensus 110 ~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------~tglVVDiG~~~t~v~PV~--dG~~-l~~~~~r~~~ 180 (375)
T PTZ00452 110 MNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------TIGLVVDSGEGVTHCVPVF--EGHQ-IPQAITKINL 180 (375)
T ss_pred CCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC------ceeeeecCCCCcceEEEEE--CCEE-eccceEEeec
Confidence 34567787776664 44577788889999999987653 3569999999999998776 3321 1122223569
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc----------------eeEEeeecccCCce
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------------QVRVEIESLFDGID 144 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~i~i~~~~~~~~ 144 (487)
||.++++.|.+.|..+ +..+.... . ...++.+|+.++... ...+. +-+|.
T Consensus 181 gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~- 246 (375)
T PTZ00452 181 AGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPDGN- 246 (375)
T ss_pred cchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCCCC-
Confidence 9999999888876432 21221110 0 112444555543211 01122 22333
Q ss_pred eEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCcCEEEEEcCCCCcHHHHHHHHhhc----CC-C
Q 011367 145 FSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYF----DG-K 209 (487)
Q Consensus 145 ~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~ip~v~~~l~~~f----~~-~ 209 (487)
.+.+..+.| |-++.|.+ ..+.++|.+.+..+..+ ..-...|+|+||+|.+|.+.++|.+.+ |. .
T Consensus 247 -~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~ 325 (375)
T PTZ00452 247 -ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQL 325 (375)
T ss_pred -EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCc
Confidence 345566655 22444432 23566677777765322 233578999999999999999998766 21 1
Q ss_pred --CCCCCCCchhHHhhhhhhhhh
Q 011367 210 --EPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 210 --~~~~~~~p~~aVa~GAa~~a~ 230 (487)
++..+.++..++=.|++++|.
T Consensus 326 ~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 326 KIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred eeEEecCCCcceeEEECchhhcC
Confidence 233344666777788888875
No 48
>PTZ00466 actin-like protein; Provisional
Probab=98.32 E-value=6.6e-06 Score=83.39 Aligned_cols=205 Identities=16% Similarity=0.110 Sum_probs=125.5
Q ss_pred CCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCc
Q 011367 2 LLSLFLRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 80 (487)
Q Consensus 2 ~f~~~qR~a~~~Aa-~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 80 (487)
++...+|+.+.+.+ +.-|+.-+.+.+.|.+|+++++. .+-+|+|+|.+.|.++-+. +|.. +........+
T Consensus 116 ~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~tglVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~ 186 (380)
T PTZ00466 116 LNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------TNGTVLDCGDGVCHCVSIY--EGYS-ITNTITRTDV 186 (380)
T ss_pred cccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------ceEEEEeCCCCceEEEEEE--CCEE-eecceeEecC
Confidence 45667888776654 44678888889999999987753 3679999999999998765 3321 2222223579
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCc---------------eeEEeeecccCCcee
Q 011367 81 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH---------------QVRVEIESLFDGIDF 145 (487)
Q Consensus 81 GG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---------------~~~i~i~~~~~~~~~ 145 (487)
||.++++.|.+.+.+. +..... . .-+..++.+|+.++... ...+. +-+|.
T Consensus 187 GG~~lt~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~---LPdg~-- 251 (380)
T PTZ00466 187 AGRDITTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYI---LPDGS-- 251 (380)
T ss_pred chhHHHHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEE---CCCCc--
Confidence 9999999988876431 211111 0 11123455565543110 01111 22333
Q ss_pred EEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCcCEEEEEcCCCCcHHHHHHHHhhcCC-------
Q 011367 146 SEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG------- 208 (487)
Q Consensus 146 ~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~ip~v~~~l~~~f~~------- 208 (487)
.+.|..+.| |-++.|-+ ..+.+.|.+.+.++..+ ..-...|+|+||+|.+|.+.++|...+..
T Consensus 252 ~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~ 331 (380)
T PTZ00466 252 QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDIT 331 (380)
T ss_pred EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCce
Confidence 344565555 33444422 24556677777665432 23357899999999999999999877621
Q ss_pred CCCCCCCCchhHHhhhhhhhhh
Q 011367 209 KEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 209 ~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
.++..+.++..++=+|++++|.
T Consensus 332 v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 332 IRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred EEEecCCCCceeEEECchhhcC
Confidence 1233445667777788888875
No 49
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.28 E-value=6.7e-06 Score=76.42 Aligned_cols=189 Identities=21% Similarity=0.211 Sum_probs=100.9
Q ss_pred HHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHHHHH
Q 011367 16 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 95 (487)
Q Consensus 16 ~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~~ 95 (487)
+..|.++..-=.|+.+|.+.....+. .+..+.++|+||||||.+++.-++... -+.-. -.|+.++..|...
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~v~-~iHlA----GAG~mVTmlI~sE--- 176 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGEVT-AIHLA----GAGNMVTMLINSE--- 176 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS-EE-EEEEE-----SHHHHHHHHHHH---
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCcEE-EEEec----CCchhhHHHHHHh---
Confidence 45678877777999999987644433 467899999999999999997555432 22112 2456666554322
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCC-----------ceeEEeee----c-------ccCC--ceeEEEecH
Q 011367 96 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----------HQVRVEIE----S-------LFDG--IDFSEPLTR 151 (487)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~i~----~-------~~~~--~~~~~~itr 151 (487)
.|++. +.-||.+|+---.. -...+.-+ . +.++ .++...++-
T Consensus 177 -----LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~l 241 (332)
T PF08841_consen 177 -----LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSL 241 (332)
T ss_dssp -----CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-H
T ss_pred -----hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccH
Confidence 34322 14577777651100 00011000 0 0011 122222333
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHc--CCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCC-------CCCCCCCchhHH
Q 011367 152 ARFEELNNDLFRKT-MGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK-------EPNKGVNPDEAV 221 (487)
Q Consensus 152 ~~fe~~~~~~~~~~-~~~i~~~l~~~--~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~-------~~~~~~~p~~aV 221 (487)
+.+..+-...-+++ ..-..++|++. .-...+|+.|+|||||+.=.=|-+++.+.+..- .+.-..-|..||
T Consensus 242 Ekir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAV 321 (332)
T PF08841_consen 242 EKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAV 321 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHH
Confidence 33333332222222 23344555543 223568999999999998777777887776322 345556899999
Q ss_pred hhhhhhh
Q 011367 222 AYGAAVQ 228 (487)
Q Consensus 222 a~GAa~~ 228 (487)
|.|.++.
T Consensus 322 ATGLvls 328 (332)
T PF08841_consen 322 ATGLVLS 328 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
No 50
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.87 E-value=0.00014 Score=70.75 Aligned_cols=196 Identities=21% Similarity=0.257 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCCce----------------------eeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEE
Q 011367 6 FLRQATKDAGIIAGLNV----------------------ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 63 (487)
Q Consensus 6 ~qR~a~~~Aa~~AGl~~----------------------~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~ 63 (487)
..+++++++.+.+|.+. -..++|-+|-+.......+ ..=.|+|+||- |.-++.
T Consensus 171 ~~~~~l~~~le~l~~~~~~I~~~~~TGYGR~~v~~~~~aD~~~~Ei~ah~kgA~~f~p---~~dtIiDIGGQ--D~K~i~ 245 (396)
T COG1924 171 IAEKALKEALEELGEKLEEILGLGVTGYGRNLVGAALGADKVVVEISAHAKGARYFAP---DVDTVIDIGGQ--DSKVIK 245 (396)
T ss_pred hHHHHHHHHHHHcccChheeeeeeeecccHHHhhhhhcCCcceeeeehhHHHHHHhCC---CCcEEEEecCc--ceeEEE
Confidence 35677888888877652 1234455543332211111 11289999995 555666
Q ss_pred EeCCeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeec-ccCC
Q 011367 64 IDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIES-LFDG 142 (487)
Q Consensus 64 ~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~~~~ 142 (487)
+.+|.+.-...+.-..-|.-.|=+.++ +..+.++. .+-+-+++++..-.-++.+.+..++ +..-
T Consensus 246 i~dG~v~df~mN~~CAAGtGrFLE~~A--------~~Lgv~v~-------E~~~~A~~~~~~v~i~S~CaVF~eSevi~~ 310 (396)
T COG1924 246 LEDGKVDDFTMNDKCAAGTGRFLEVIA--------RRLGVDVE-------ELGKLALKATPPVKINSRCAVFAESEVISA 310 (396)
T ss_pred EeCCeeeeeEeccccccccchHHHHHH--------HHhCCCHH-------HHHHHHhcCCCCcccCCeeEEEehHHHHHH
Confidence 667765544443333333333322222 23344432 2223334444322233333332221 0000
Q ss_pred ceeEEEecHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHH
Q 011367 143 IDFSEPLTRARFEELNNDLFRKTMGPVKK-AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAV 221 (487)
Q Consensus 143 ~~~~~~itr~~fe~~~~~~~~~~~~~i~~-~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aV 221 (487)
..- -...|+++..+...+...+.. +++.... .++ |+|+||.+....+.+++...+ +.++..|.+|+..-
T Consensus 311 --~~~---G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i--~~~--iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~G 380 (396)
T COG1924 311 --LAE---GASPEDILAGLAYSVAENVAEKVIKRVDI--EEP--IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMG 380 (396)
T ss_pred --HHc---CCCHHHHHHHHHHHHHHHHHHHHhhccCC--CCC--EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhh
Confidence 000 012466777777776666555 5554332 222 999999999999999999999 78999999999999
Q ss_pred hhhhhhhhhh
Q 011367 222 AYGAAVQGGI 231 (487)
Q Consensus 222 a~GAa~~a~~ 231 (487)
|.|||++|..
T Consensus 381 AiGAAL~a~~ 390 (396)
T COG1924 381 AIGAALIAKE 390 (396)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 51
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=97.87 E-value=0.00031 Score=76.83 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=64.2
Q ss_pred ceeEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCC--C-------
Q 011367 143 IDFSEPLTRARFEELNN---DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK--E------- 210 (487)
Q Consensus 143 ~~~~~~itr~~fe~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~--~------- 210 (487)
.++.+.|+...+...+- -.+..++..+.+++.. .+.|.++|+|=-||+|.||..++...|=. .
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 35567888888888774 5666666666666665 45789999999999999999999987311 1
Q ss_pred ----------CCCCCCchhHHhhhhhhhhhhcc
Q 011367 211 ----------PNKGVNPDEAVAYGAAVQGGILS 233 (487)
Q Consensus 211 ----------~~~~~~p~~aVa~GAa~~a~~~s 233 (487)
..+--||-..||.||.+++....
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 12345899999999998876544
No 52
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.85 E-value=0.00036 Score=66.00 Aligned_cols=197 Identities=18% Similarity=0.157 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCc---ee---------------eeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEe-C
Q 011367 6 FLRQATKDAGIIAGLN---VA---------------RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID-N 66 (487)
Q Consensus 6 ~qR~a~~~Aa~~AGl~---~~---------------~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~-~ 66 (487)
..++++.++.+.+|+. +. ..++|-+|-|....+.. +..=-|+|+||--+-+ +.++ +
T Consensus 43 ~~~~~l~~~~~~~g~~~~~i~~i~~TGYGR~~~~a~~~vtEIt~ha~GA~~~~---p~~~tIiDIGGQD~K~--I~~~~~ 117 (262)
T TIGR02261 43 LAEDAYDDLLEEAGLAAADVAYCATTGEGESLAFHTGHFYSMTTHARGAIYLN---PEARAVLDIGALHGRA--IRMDER 117 (262)
T ss_pred HHHHHHHHHHHHcCCChhheEEEEEECCchhhhhhcCCeeEEeHHHHHHHHHC---CCCCEEEEeCCCceEE--EEEcCC
Confidence 3577888888888872 11 34566666655432221 2233799999976654 5553 4
Q ss_pred CeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeE
Q 011367 67 GVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFS 146 (487)
Q Consensus 67 ~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~ 146 (487)
+.+.-...+.-..-|.-.|=+.+++. .++++. .|-..+.+++....-+..+.+.-++-.-. -..
T Consensus 118 G~v~~f~MNdkCAAGTG~FLe~~A~~--------L~i~le-------el~~~a~~~~~~~~iss~CtVFaeSevi~-~~~ 181 (262)
T TIGR02261 118 GKVEAYKMTSQCASGSGQFLENIARY--------LGIAQD-------EIGSLSQQADNPEKVSGICAVLAETDVIN-MVS 181 (262)
T ss_pred CcEeeEEecCcccccccHHHHHHHHH--------hCCCHH-------HHHHHHhcCCCCCCcCCCceEEchhhHHH-HHH
Confidence 44332222222222322322222222 344331 12122333333332333333322210000 000
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCC----CCCCCCchhHHh
Q 011367 147 EPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE----PNKGVNPDEAVA 222 (487)
Q Consensus 147 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~----~~~~~~p~~aVa 222 (487)
--.+| ++++..+...+...+...+++.+. .-+.|+|.||.++.+.+++.+++.+++.. +..+.+|+.+-|
T Consensus 182 ~G~~~---edI~aGl~~sia~r~~~~~~~~~~---~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gA 255 (262)
T TIGR02261 182 RGISA---PNILKGIHESMADRLAKLLKSLGA---LDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGA 255 (262)
T ss_pred CCCCH---HHHHHHHHHHHHHHHHHHHhccCC---CCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHH
Confidence 11233 344445555555555444444321 11359999999999999999999884333 555678999999
Q ss_pred hhhhhhh
Q 011367 223 YGAAVQG 229 (487)
Q Consensus 223 ~GAa~~a 229 (487)
.|||++|
T Consensus 256 lGAAl~~ 262 (262)
T TIGR02261 256 IGAALWG 262 (262)
T ss_pred HHHHHcC
Confidence 9999875
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.83 E-value=0.00036 Score=69.67 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhh
Q 011367 155 EELNNDLFRKTMGPVKK-AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~-~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
++++..+...+...+.. +++..++ -+.|+++||.++.|.+.+.+++.+ +.++..+.+|+.+.|.|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i----~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDV----REPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC----CCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 34444444444444443 2333221 235999999999999999999999 67888899999999999999984
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.82 E-value=0.0006 Score=65.44 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCC-CCCCchhHHhhhhhhhhhh
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN-KGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~-~~~~p~~aVa~GAa~~a~~ 231 (487)
+++..+...+...+...+++.++ -+.|+|+||.++.|.+++.+++.+ +.++. .+.+|+.+-|.|||++|..
T Consensus 217 dI~aGl~~sia~rv~~~~~~~~i----~~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 217 MVIAAYCQAMAERVVSLLERIGV----EEGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccCC----CCCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 34444444444444444443222 235899999999999999999999 56665 5778999999999999853
No 55
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.77 E-value=2.7e-05 Score=78.65 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=54.6
Q ss_pred HHHHHHHHHHH------------cCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEe
Q 011367 7 LRQATKDAGII------------AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLST 74 (487)
Q Consensus 7 qR~a~~~Aa~~------------AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~ 74 (487)
.++-++++.+. ||+++..++. |.|++.+... . ++...++++|+|||||+++++.-+... .
T Consensus 99 ~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e-Eke~gVa~IDIGgGTT~iaVf~~G~l~-----~ 170 (475)
T PRK10719 99 RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E-ERNTRVLNIDIGGGTANYALFDAGKVI-----D 170 (475)
T ss_pred HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-h-hccCceEEEEeCCCceEEEEEECCEEE-----E
Confidence 34556677776 7777777766 9999987753 3 567899999999999999999744332 2
Q ss_pred cCCCCcchhHHHHH
Q 011367 75 NGDTHLGGEDFDQR 88 (487)
Q Consensus 75 ~~~~~lGG~~id~~ 88 (487)
.+..++||+.++..
T Consensus 171 T~~l~vGG~~IT~D 184 (475)
T PRK10719 171 TACLNVGGRLIETD 184 (475)
T ss_pred EEEEecccceEEEC
Confidence 34467899887654
No 56
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.74 E-value=0.00084 Score=66.39 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=95.9
Q ss_pred eeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEe-CCeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHhcC
Q 011367 24 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID-NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 102 (487)
Q Consensus 24 ~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~ 102 (487)
.+++|-+|-|....+-. +..=-|+|+||-.+-+ +.++ ++.+.-...+.-..-|.-.|=+.+++ ..+
T Consensus 249 ~vitEItcHA~GA~~l~---P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~--------~Lg 315 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY---PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIAD--------EMN 315 (432)
T ss_pred ceeeeHHHHHHHHHHHC---CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHH--------HcC
Confidence 35688888776543222 2334799999976664 5554 35433222332222343333222222 234
Q ss_pred CCCccCHHHHHHHHHHHHHHHHHccCCceeEEeeecccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 011367 103 KDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQ 182 (487)
Q Consensus 103 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~ 182 (487)
+++. .|-..+.+++....-+..+.+.-++-.-. -+.--+++ ++++..+...+...+...+.+.. .-
T Consensus 316 i~le-------El~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~---~i 381 (432)
T TIGR02259 316 MGLH-------ELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSG---GI 381 (432)
T ss_pred CCHH-------HHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 4331 12222333443333334444432210000 00011233 33444455555554444444431 11
Q ss_pred cCEEEEEcCCCCcHHHHHHHHhhcC----CCCCCCCCCchhHHhhhhhhhh
Q 011367 183 IDEIVLVGGSTRIPKVQQLLKDYFD----GKEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 183 i~~V~LvGG~s~ip~v~~~l~~~f~----~~~~~~~~~p~~aVa~GAa~~a 229 (487)
-+.|+|+||.++.+.+.+.|++.++ +.++..+.+|+.+-|.|||++|
T Consensus 382 ~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 382 TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 2469999999999999999999984 4567788999999999999875
No 57
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=97.54 E-value=0.0014 Score=63.84 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=59.9
Q ss_pred HHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchh
Q 011367 5 LFLRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 83 (487)
Q Consensus 5 ~~qR~a~~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 83 (487)
.++|+.+.+. .+...+....|..+|+++|++.| ..+-||+|+|++++.++-+. +|.+-..+... ..+||+
T Consensus 119 ~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G------rstalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGd 189 (426)
T KOG0679|consen 119 RANREKLTELMFEKLNVPAFYLAKTAVCTAFANG------RSTALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGD 189 (426)
T ss_pred HHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC------CCceEEEEecCCCceeeeee--cceEeeeeeEe-cccchH
Confidence 3456555544 45566777888999999998875 34679999999999998775 33222222333 679999
Q ss_pred HHHHHHHHHHHHH
Q 011367 84 DFDQRVMEYFIKL 96 (487)
Q Consensus 84 ~id~~l~~~~~~~ 96 (487)
.++..+.+.|..+
T Consensus 190 Fl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 190 FLNDQCRQLLEPK 202 (426)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988765
No 58
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=97.43 E-value=0.0012 Score=67.87 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=56.7
Q ss_pred CHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcch
Q 011367 4 SLFLRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG 82 (487)
Q Consensus 4 ~~~qR~a~~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 82 (487)
...+|+.+.+. .+...+.-+.+...+.+++.+.+... .+.+|+|+|.+.|+|+-+.-+-.. .....-..+||
T Consensus 118 ~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g~ViD~G~~~t~v~PV~DG~~l---~~a~~ri~~gG 190 (444)
T COG5277 118 PPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD----ETGLVIDSGDSVTHVIPVVDGIVL---PKAVKRIDIGG 190 (444)
T ss_pred cHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC----CceEEEEcCCCceeeEeeeccccc---cccceeeecCc
Confidence 34455444433 44456666677777777776654332 478999999999999977643222 11223356999
Q ss_pred hHHHHHHHHHHHHH
Q 011367 83 EDFDQRVMEYFIKL 96 (487)
Q Consensus 83 ~~id~~l~~~~~~~ 96 (487)
++++..|...+...
T Consensus 191 ~~it~~l~~lL~~~ 204 (444)
T COG5277 191 RDITDYLKKLLREK 204 (444)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999988887763
No 59
>PRK13317 pantothenate kinase; Provisional
Probab=97.40 E-value=0.0024 Score=61.58 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=42.5
Q ss_pred CcCEEEEEc-CCCCcHHHHHHHHhhcC--CCCCCCCCCchhHHhhhhhhhhh
Q 011367 182 QIDEIVLVG-GSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 182 ~i~~V~LvG-G~s~ip~v~~~l~~~f~--~~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|+.+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 457899999 79999999999998873 45677788999999999999875
No 60
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.84 E-value=0.0013 Score=60.30 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-cCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 154 FEELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 154 fe~~~~~~~~~~~~~i~~~l~~~~~~-~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
..+++..+++.+.-.++..++...-. ...++.|+++||.++.|.+.+++...| +.++....+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 34555555666655555555443111 245899999999999999999999999 566655434 88999999999863
No 61
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=96.50 E-value=0.019 Score=59.77 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=40.6
Q ss_pred CCcCEEEEEcCCCCcHHHHHHHHhhcCCC--C-----------------CCCCCCchhHHhhhhhhhhhhcc
Q 011367 181 NQIDEIVLVGGSTRIPKVQQLLKDYFDGK--E-----------------PNKGVNPDEAVAYGAAVQGGILS 233 (487)
Q Consensus 181 ~~i~~V~LvGG~s~ip~v~~~l~~~f~~~--~-----------------~~~~~~p~~aVa~GAa~~a~~~s 233 (487)
.+.|.++|+|--||+|.||..++...|-. . ..+--||-..+|.||-+++..+.
T Consensus 777 y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 777 YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 45788999999999999999998876311 1 12334899999999998886544
No 62
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=96.39 E-value=0.0079 Score=58.62 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhh
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 228 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~ 228 (487)
+++-..+++.+.|++.....+..+.+. .++.+||.+ |++...|.+.++-..+..+..|.-+-|.||++-
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 444445555555555544445444332 345556665 667778888874445666667788999999853
No 63
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.25 E-value=0.011 Score=62.92 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=63.6
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhh
Q 011367 148 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 148 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~ 227 (487)
.-+|..+..++..+++.+.-.++..++...-....++.|.++||++++|...+++...+ +.++....++ ++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHH
Confidence 33566677788888888776666666543212235789999999999999999999999 6777666554 578999999
Q ss_pred hhhhccC
Q 011367 228 QGGILSG 234 (487)
Q Consensus 228 ~a~~~s~ 234 (487)
.|+.-.+
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9975443
No 64
>PRK15027 xylulokinase; Provisional
Probab=96.23 E-value=0.009 Score=62.86 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhh
Q 011367 150 TRARFEELNNDLFRKTMGPVKK---AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 226 (487)
Q Consensus 150 tr~~fe~~~~~~~~~~~~~i~~---~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa 226 (487)
+|.+|- ..+++.+.-.++. .+++.+ ..++.|+++||+++++...+++...+ +.++....+++++.++|||
T Consensus 357 ~~~~l~---rAvlEgia~~~~~~~~~l~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA 429 (484)
T PRK15027 357 GPNELA---RAVLEGVGYALADGMDVVHACG---IKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAA 429 (484)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHcC---CCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHH
Confidence 455544 3444444433333 334333 34789999999999999999999999 6777555567778899999
Q ss_pred hhhhhccC
Q 011367 227 VQGGILSG 234 (487)
Q Consensus 227 ~~a~~~s~ 234 (487)
+.|+.-.+
T Consensus 430 ~lA~~~~G 437 (484)
T PRK15027 430 RLAQIAAN 437 (484)
T ss_pred HHHHHhcC
Confidence 99975443
No 65
>PLN02669 xylulokinase
Probab=96.15 E-value=0.015 Score=62.11 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
++..+++.+.-.++..++..+.. ..++.|+++||+|++|.+.+++...| +..+.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555555555555544332 45789999999999999999999999 5666555454 6889999999975
No 66
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.12 E-value=0.073 Score=54.78 Aligned_cols=184 Identities=17% Similarity=0.165 Sum_probs=99.2
Q ss_pred EEEEEEeCCCeEEEEEEEEeC-------CeEEEEEecCCCCcchhHHHHHHHHHHHHHHH---------HhcCCCCccCH
Q 011367 46 NILVFDLGGGTFDVSILTIDN-------GVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIK---------KKHGKDISKDK 109 (487)
Q Consensus 46 ~vlv~D~GggT~dvsv~~~~~-------~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~---------~~~~~~~~~~~ 109 (487)
+-|++=+|-+|+++.+-+... .....+....-..-||..=.=+|.+||.+... .+++..+ ..
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~ 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YE 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HH
Confidence 345555677777777665331 11111111111224777777778888766531 1111111 11
Q ss_pred HHHHHHHHHHHHHHHHccCCceeEEeeecccCC-------------ceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011367 110 RAIGKLRREAERAKRALSSQHQVRVEIESLFDG-------------IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDA 176 (487)
Q Consensus 110 ~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~-------------~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~ 176 (487)
....++..-+++++...+....-.+ ++.+..+ ..+++.=+.+.+-.+....+.-+.--.+..++..
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~~l~~-l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLASGLHV-LDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccCCcEe-cccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2333444445666655543322111 2211110 1122223344444555555555543333333322
Q ss_pred CCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccC
Q 011367 177 GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 234 (487)
Q Consensus 177 ~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~ 234 (487)
.-..-.|+.|+.+||..+.|.+.+.+.... +..+..+ ..+++++.|+|+.|+.-.+
T Consensus 426 ~~~g~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 426 EDQGIAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHcCCeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 223467899999999999999999999998 5555554 6678999999999976443
No 67
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=96.02 E-value=0.013 Score=49.07 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=27.1
Q ss_pred EEEEEeCCCeEEEEEEEEe-CCeEEEEEecCCCC--cchhHHH--HHHHHHH
Q 011367 47 ILVFDLGGGTFDVSILTID-NGVFEVLSTNGDTH--LGGEDFD--QRVMEYF 93 (487)
Q Consensus 47 vlv~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~--lGG~~id--~~l~~~~ 93 (487)
|+++|+|++++.+.+++.+ .+.++++....... +=+..|. +.+..-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 6899999999999999973 34455553332111 1166666 5555443
No 68
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=95.76 E-value=0.025 Score=56.25 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=81.9
Q ss_pred EEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Q 011367 46 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRA 125 (487)
Q Consensus 46 ~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 125 (487)
+=+|+|+|.|-+.+.=+.- | +.+........+||++++.-+...|.+ .|........ . .-++.+|+.
T Consensus 146 tG~VvD~G~gvt~~vPI~e--G-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~--~---eIv~diKek 212 (372)
T KOG0676|consen 146 TGLVVDSGDGVTHVVPIYE--G-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAE--F---EIVRDIKEK 212 (372)
T ss_pred eEEEEEcCCCceeeeeccc--c-cccchhhheecccchhhHHHHHHHHHh-----cccccccccH--H---HHHHHhHhh
Confidence 4589999999776544331 2 122222344679999999876666554 2222211100 0 123444444
Q ss_pred ccCCc------------eeEEeee-cccCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHc--CCCcCC
Q 011367 126 LSSQH------------QVRVEIE-SLFDGIDFSEPLTRARFE---ELNNDLF-----RKTMGPVKKAMEDA--GLEKNQ 182 (487)
Q Consensus 126 Ls~~~------------~~~i~i~-~~~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~--~~~~~~ 182 (487)
++... ...+... .+-++.. +.+.-+.|. -+++|.+ ..+-+.+-+.+-++ ++.+.-
T Consensus 213 lCyvald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L 290 (372)
T KOG0676|consen 213 LCYVALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDL 290 (372)
T ss_pred hcccccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHH
Confidence 43211 0111110 0222322 333333321 2222211 12223333333332 233334
Q ss_pred cCEEEEEcCCCCcHHHHHHHHhhcC----C-CC--CCCCCCchhHHhhhhhhhhh
Q 011367 183 IDEIVLVGGSTRIPKVQQLLKDYFD----G-KE--PNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 183 i~~V~LvGG~s~ip~v~~~l~~~f~----~-~~--~~~~~~p~~aVa~GAa~~a~ 230 (487)
...|+|+||+|.+|.+.+++.+... + .+ +..+.+...+|=.|+.+.|.
T Consensus 291 ~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 291 YENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred HhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 5789999999999999998887662 1 11 22222333455566666654
No 69
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.63 E-value=0.028 Score=59.43 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccC
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 234 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~ 234 (487)
.++..+++.+.-.++..++... .....++.|.++||++++|.+.+++...| +.++.... ..++.++|||+.|+.-.+
T Consensus 376 ~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 376 HIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEecC-cccchHHHHHHHHhhhcC
Confidence 3444555555544444443321 11234789999999999999999999999 67775544 456889999999975443
No 70
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.56 E-value=0.029 Score=59.32 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccC
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 234 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~-~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~ 234 (487)
.++..+++.+.-.++..++...- ....++.|.++||+++++.+.+++...| +.++.... ..++.++|||+.|+.-.+
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 34445555555444444433211 1124789999999999999999999999 67775554 455889999999976544
No 71
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.52 E-value=0.13 Score=49.43 Aligned_cols=47 Identities=21% Similarity=0.118 Sum_probs=39.0
Q ss_pred CCcCEEEEEcC-CCCcHHHHHHHHhhc--CCCCCCCCCCchhHHhhhhhh
Q 011367 181 NQIDEIVLVGG-STRIPKVQQLLKDYF--DGKEPNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 181 ~~i~~V~LvGG-~s~ip~v~~~l~~~f--~~~~~~~~~~p~~aVa~GAa~ 227 (487)
..+..|+++|| .+..|.+++.+...+ .+.++..+.|+...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45789999999 678999999998766 235667788999999999986
No 72
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.50 E-value=0.034 Score=58.48 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccC
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 234 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~ 234 (487)
.++..+++.+.-.++..++... .....++.|.++||+++++.+.+++...| +.++... ...++.++|||+.|+.-.+
T Consensus 363 ~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcC
Confidence 3444445444444444443221 11235789999999999999999999999 6766654 4566889999999976554
No 73
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.41 E-value=0.032 Score=58.42 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 155 EELNNDLFRKTMGPVKKAM---EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l---~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
..++..+++.+.-.++..+ ++.+ ...++.|.++||++++|...+++...| +.++....+ .++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHH
Confidence 3345555555544444433 3332 224788999999999999999999999 677765555 46789999999976
Q ss_pred ccC
Q 011367 232 LSG 234 (487)
Q Consensus 232 ~s~ 234 (487)
-.+
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 544
No 74
>PRK04123 ribulokinase; Provisional
Probab=95.41 E-value=0.033 Score=59.59 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCC-CCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhcc
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 233 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s 233 (487)
.++..+++.+.-.++..++...-....++.|.++||+ ++++.+.+++...| +.++... .+.++.++|||+.|+.-.
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAA 488 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHh
Confidence 3455555555544444333221112357899999999 99999999999999 6666444 456788999999997543
No 75
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.40 E-value=0.03 Score=59.10 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccC
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 234 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~ 234 (487)
.++..+++.+.-.++..++... .....++.|.++||+++++...+++...| +.++... +..++.|+|||+.|+.-.+
T Consensus 372 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 372 HIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhcC
Confidence 3344444444444444443321 11234789999999999999999999999 6777554 4456889999999975443
No 76
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.39 E-value=0.035 Score=59.18 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCC-CCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhh
Q 011367 150 TRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 228 (487)
Q Consensus 150 tr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~ 228 (487)
+|.+ ++..+++.+.-.++..++........++.|.++||+ ++++.+.+++...| +.++....++ ++.|.|||+.
T Consensus 406 ~~~~---~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~l 480 (536)
T TIGR01234 406 DAPL---LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIF 480 (536)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHH
Confidence 4544 444444444433333333221112357899999999 99999999999999 6777655554 6889999999
Q ss_pred hhhccC
Q 011367 229 GGILSG 234 (487)
Q Consensus 229 a~~~s~ 234 (487)
|+.-.+
T Consensus 481 A~~~~G 486 (536)
T TIGR01234 481 AAVAAG 486 (536)
T ss_pred HHHHcC
Confidence 976544
No 77
>PRK10331 L-fuculokinase; Provisional
Probab=95.32 E-value=0.036 Score=58.09 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhh
Q 011367 150 TRARFEELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 228 (487)
Q Consensus 150 tr~~fe~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~ 228 (487)
+|.+ ++..+++.+.-.++..++... .....++.|.++||++++|...+++...| +.++.... ..++.++|||+.
T Consensus 359 ~~~~---l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~l 433 (470)
T PRK10331 359 TRGH---FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMF 433 (470)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHH
Confidence 4544 444555555444444443321 11235789999999999999999999999 67675544 456889999999
Q ss_pred hhhccC
Q 011367 229 GGILSG 234 (487)
Q Consensus 229 a~~~s~ 234 (487)
|+.-.+
T Consensus 434 a~~~~G 439 (470)
T PRK10331 434 GWYGVG 439 (470)
T ss_pred HHHhcC
Confidence 976544
No 78
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.08 E-value=0.044 Score=57.96 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHH----HHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 156 ELNNDLFRKTMGPVKK----AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~----~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
.++..+++.+.-.+.. ..+..+ ..++.|.++||+++++...+++...| +.++....++ ++.++|||+.|+.
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~ 448 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLK 448 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHH
Confidence 3444455554444433 323233 35889999999999999999999999 6777655444 5889999999975
Q ss_pred cc
Q 011367 232 LS 233 (487)
Q Consensus 232 ~s 233 (487)
-.
T Consensus 449 ~~ 450 (505)
T TIGR01314 449 AL 450 (505)
T ss_pred hc
Confidence 43
No 79
>PLN02295 glycerol kinase
Probab=95.00 E-value=0.055 Score=57.37 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc----CC--CcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhh
Q 011367 155 EELNNDLFRKTMGPVKKAMEDA----GL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 228 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~----~~--~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~ 228 (487)
..++..+++.+.-.++..++.. +. ....++.|.++||++++|.+.+++...| +.++... +..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHH
Confidence 3344455555554444444432 21 1235788999999999999999999999 6777544 4457889999999
Q ss_pred hhhccC
Q 011367 229 GGILSG 234 (487)
Q Consensus 229 a~~~s~ 234 (487)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 875444
No 80
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.98 E-value=0.051 Score=56.70 Aligned_cols=51 Identities=27% Similarity=0.314 Sum_probs=42.3
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCC
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 235 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~ 235 (487)
.++.|.++||+++.+...+++...+ +.++... +.++.|+|||+.|+.-.+.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999 6777533 3678999999998765543
No 81
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.93 E-value=0.083 Score=54.62 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCc-CCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhcc
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAGLEK-NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 233 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~~~~-~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s 233 (487)
+.+....++.+..-++..|+....+. ..|+.+.+.||.|+.|.+-+.+...+ +.++..+.+++. |+.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 33444555555555555554433333 57888999999999999999999999 688888888887 9999999998776
Q ss_pred CC
Q 011367 234 GE 235 (487)
Q Consensus 234 ~~ 235 (487)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 55
No 82
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.79 E-value=0.056 Score=57.43 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhcc
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 233 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s 233 (487)
.++..+++.+.-.++..++... .....++.|.++||+++++...+++...+ +.++....++ ++.++|||+.|+.-.
T Consensus 382 ~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~ 458 (520)
T PRK10939 382 TLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGA 458 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHh
Confidence 3444445555443333333211 11234789999999999999999999999 6777655544 578999999987544
No 83
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.59 E-value=0.073 Score=55.77 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCC
Q 011367 157 LNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 235 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~ 235 (487)
++..+++.+.-.++..++... .....++.|.++||+++++...+++...+ +.++... +.++.+.|||+.|..-.+.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG--PVEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh-CCCeeeC--ChhHHHHHHHHHHHHHcCC
Confidence 444455555444444433221 11234788999999999999999999999 6777543 2378899999998765443
No 84
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.04 E-value=0.046 Score=55.82 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCC--cCCcCEEEEEcCCCCcHHHHHHHHhhcCC-------CCCCCCCCchhHHhhhhhhhhhh
Q 011367 166 MGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 166 ~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~ip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
..++...|...-.+ ..-+..|+|+||+|.+|.+.+.|...+-+ ..|....||-..+=+||+.+|+.
T Consensus 540 ~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 540 AEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 44455555543222 12288999999999999999999887622 24566789999999999999975
No 85
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=93.95 E-value=0.52 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.0
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
-+..|+++||++..|.++++|...+
T Consensus 317 l~~NIv~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680|consen 317 LLENIVCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred HHhcEEEecCccCCcchHHHHHHHH
Confidence 3568999999999999999998776
No 86
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.42 E-value=0.22 Score=52.59 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=36.8
Q ss_pred cCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhh
Q 011367 180 KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 180 ~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
...++.|.++||+++.++..+++...+ +.++..+...+.+.+-||++.+.
T Consensus 399 g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~~ 448 (502)
T COG1070 399 GKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAAA 448 (502)
T ss_pred CCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHHH
Confidence 355779999999999999999999999 67776554444444445544443
No 87
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.21 E-value=0.24 Score=49.80 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=45.3
Q ss_pred HcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhh
Q 011367 175 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 175 ~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 231 (487)
..+........|+.+||.|+...|-+.|.+.| +..+... +...+.+.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 34666678899999999999999999999999 5555433 7778999999998764
No 88
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=92.59 E-value=0.48 Score=48.35 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHH
Q 011367 8 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 87 (487)
Q Consensus 8 R~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 87 (487)
++.+.--....||.-..++-|..||.+..|+. .-.|||+|+-+|.|+.++-+-.. ..+.-....||.||++
T Consensus 244 eefl~ilL~eL~F~~~~v~QESlaatfGaGls------s~CVVdiGAQkTsIaCVEdGvs~---~ntri~L~YGGdDitr 314 (618)
T KOG0797|consen 244 EEFLTILLGELGFNSAVVHQESLAATFGAGLS------SACVVDIGAQKTSIACVEDGVSL---PNTRIILPYGGDDITR 314 (618)
T ss_pred HHHHHHHHHHhccceEEEEhhhhHHHhcCCcc------ceeEEEccCcceeEEEeecCccc---cCceEEeccCCchHHH
Confidence 44555556678999999999999999877665 34799999999999988743211 1111224589999999
Q ss_pred HHHHHHHH
Q 011367 88 RVMEYFIK 95 (487)
Q Consensus 88 ~l~~~~~~ 95 (487)
.|+-.+..
T Consensus 315 ~f~~ll~r 322 (618)
T KOG0797|consen 315 CFLWLLRR 322 (618)
T ss_pred HHHHHHHh
Confidence 98766543
No 89
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.36 E-value=0.34 Score=46.67 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhc----CCCCCCCCCCchhHHhhhhhhhh
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF----DGKEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f----~~~~~~~~~~p~~aVa~GAa~~a 229 (487)
+++....+.+...+..++.+...... .|+|+||..+.+.+++.+.+.+ +..++..+..|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34444555555666666665433221 2999999999977777764444 33445567789999999999876
No 90
>PRK03011 butyrate kinase; Provisional
Probab=91.85 E-value=4.9 Score=40.41 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=37.1
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhcC---CCCCCCCCCchhHHhhhhhhh
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAVQ 228 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f~---~~~~~~~~~p~~aVa~GAa~~ 228 (487)
++|.|+|.||.+..+.+++.|.+.+. ...+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999999999988763 233445556678999998854
No 91
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=91.60 E-value=0.41 Score=50.47 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCceeeeechhHHHHHHh-ccccCC-CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhH
Q 011367 7 LRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 84 (487)
Q Consensus 7 qR~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y-~~~~~~-~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 84 (487)
.+..+.++-+..|+++ ++|+-.+=|.+.| +..... .....+|+|+|||+|.++++.-..... ....++|.-.
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~-----~~Sl~lG~vr 166 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATS-----LFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceee-----eeEEeccchH
Confidence 3455666667789997 6666665555554 333222 234689999999999999886332211 1225677777
Q ss_pred HHHHH
Q 011367 85 FDQRV 89 (487)
Q Consensus 85 id~~l 89 (487)
+.+.+
T Consensus 167 l~e~f 171 (496)
T PRK11031 167 WLERY 171 (496)
T ss_pred HHHHh
Confidence 65543
No 92
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.60 E-value=0.91 Score=47.41 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCceeeeechhHHHHHHhccccCCC-CcEEEEEEeCCCeEEEEEEEE
Q 011367 9 QATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGG-EKNILVFDLGGGTFDVSILTI 64 (487)
Q Consensus 9 ~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~-~~~vlv~D~GggT~dvsv~~~ 64 (487)
+.+..+-+..|+++--|=-|-+|--.++|.-.... ....+|+|+|||+|.+++..-
T Consensus 92 eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 92 EFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecC
Confidence 45667777889887444445555444444433332 678999999999999999873
No 93
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.33 E-value=0.84 Score=44.35 Aligned_cols=73 Identities=23% Similarity=0.417 Sum_probs=41.2
Q ss_pred HHHHHHHcCCceeeeechhHHHHHHh-ccccC-CCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHH
Q 011367 11 TKDAGIIAGLNVARIINEPTAAAIAY-GLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 88 (487)
Q Consensus 11 ~~~Aa~~AGl~~~~li~Ep~Aaa~~y-~~~~~-~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 88 (487)
+.+.-+..|+++ .+|+..+=|.+.| +.... ......+|+|+|||+|.++++.- +.+.- ....++|.-.+.+.
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~~~---~~Sl~lG~vrl~e~ 150 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN--GKVVF---SQSLPLGAVRLTER 150 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET--TEEEE---EEEES--HHHHHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC--CeeeE---eeeeehHHHHHHHH
Confidence 444445679887 5565554444443 22222 14567899999999999998863 33211 11256888777665
Q ss_pred H
Q 011367 89 V 89 (487)
Q Consensus 89 l 89 (487)
+
T Consensus 151 ~ 151 (285)
T PF02541_consen 151 F 151 (285)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=90.78 E-value=0.58 Score=43.65 Aligned_cols=172 Identities=21% Similarity=0.243 Sum_probs=92.2
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHc
Q 011367 47 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRAL 126 (487)
Q Consensus 47 vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 126 (487)
=+|+|-|-|-|-+.-+.-.- .+ -.-.+-..+.|+++++-|.+.+..+ .|...-+.+- ......|+.|
T Consensus 151 GvVvDSGDGVTHi~PVye~~-~l--~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tADF-------ETVR~iKEKL 217 (389)
T KOG0677|consen 151 GVVVDSGDGVTHIVPVYEGF-VL--PHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADF-------ETVREIKEKL 217 (389)
T ss_pred eEEEecCCCeeEEeeeecce-eh--hhhhhhccccchhHHHHHHHHHHhh---ccccccccch-------HHHHHHHhhh
Confidence 37999999998887554211 00 0112335689999999998887644 2221111111 3344455555
Q ss_pred cCC-----------ceeEEeeec--ccCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCc--CCc
Q 011367 127 SSQ-----------HQVRVEIES--LFDGIDFSEPLTRARFE---ELNNDLF-----RKTMGPVKKAMEDAGLEK--NQI 183 (487)
Q Consensus 127 s~~-----------~~~~i~i~~--~~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~~~~~--~~i 183 (487)
+.- .++++-+++ +-+|.- +.+--+.|+ .++.|-+ ..+.+++-++++.+.++. .--
T Consensus 218 CYisYd~e~e~kLalETTvLv~~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lY 295 (389)
T KOG0677|consen 218 CYISYDLELEQKLALETTVLVESYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELY 295 (389)
T ss_pred eeEeechhhhhHhhhhheeeeeeeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHH
Confidence 421 112222221 223322 344445554 3555432 234455556666655442 224
Q ss_pred CEEEEEcCCCCcHHHHHHHHhhcCC---------C---------CCCCCCCchhHHhhhhhhhhhhcc
Q 011367 184 DEIVLVGGSTRIPKVQQLLKDYFDG---------K---------EPNKGVNPDEAVAYGAAVQGGILS 233 (487)
Q Consensus 184 ~~V~LvGG~s~ip~v~~~l~~~f~~---------~---------~~~~~~~p~~aVa~GAa~~a~~~s 233 (487)
.+|+|.||++.-|.+-..|++.+.. . ++..+..-.+.|-.|.|..|..+.
T Consensus 296 khIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imk 363 (389)
T KOG0677|consen 296 KHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMK 363 (389)
T ss_pred hHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhc
Confidence 7899999999999998888765421 0 122233334566677776665544
No 95
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.11 E-value=3.6 Score=40.54 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCC-C-CCCCCCc----hhHHhhhhhhhhhhc
Q 011367 159 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK-E-PNKGVNP----DEAVAYGAAVQGGIL 232 (487)
Q Consensus 159 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~-~-~~~~~~p----~~aVa~GAa~~a~~~ 232 (487)
+.+++.+...|...+.. ..+++.|+|.|-.+++|-+++.+++.|... + ....+.+ -...|.|||+.|.-+
T Consensus 241 ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~gl 316 (343)
T PF07318_consen 241 EAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGL 316 (343)
T ss_pred HHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhh
Confidence 34444445555544332 346789999999999999998888877321 1 1112222 245899999999776
Q ss_pred cCC
Q 011367 233 SGE 235 (487)
Q Consensus 233 s~~ 235 (487)
.+.
T Consensus 317 aGG 319 (343)
T PF07318_consen 317 AGG 319 (343)
T ss_pred hcc
Confidence 654
No 96
>PLN02666 5-oxoprolinase
Probab=90.03 E-value=3.3 Score=48.42 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=46.9
Q ss_pred ecHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhh
Q 011367 149 LTRARFEELNNDL-FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 149 itr~~fe~~~~~~-~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~ 227 (487)
++-++...-+..+ -....+.|+......|.++.+. .++..||.+ |...-.|.+.++-..+..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 3444444333333 3344555666666666655432 244445554 66778888888444577888999999999986
Q ss_pred h
Q 011367 228 Q 228 (487)
Q Consensus 228 ~ 228 (487)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 97
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=89.90 E-value=2.5 Score=42.41 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCC----CCCchhHHhhhhhhhhhh
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGGI 231 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~----~~~p~~aVa~GAa~~a~~ 231 (487)
+++..+..=+...|.+.+.... ..++.|+++||+++.|++.++|++.+| .++.. ..+|+.-=|..-|++|..
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3334444444555566665432 235689999999999999999999996 33322 245555445555666643
No 98
>PRK10854 exopolyphosphatase; Provisional
Probab=89.53 E-value=1.1 Score=47.42 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHh-ccccCC-CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHH
Q 011367 8 RQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 85 (487)
Q Consensus 8 R~a~~~Aa~~AGl~~~~li~Ep~Aaa~~y-~~~~~~-~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 85 (487)
...+.++-+..|+++ ++|+..+=|.+.| +..... ..+..+|+|+|||+|.++++.-.... ...+ ..+|.-.+
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~S---~~lG~vrl 172 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVES---RRMGCVSF 172 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--EeEE---EecceeeH
Confidence 344555666679987 6676666555555 333222 23568999999999999998743222 1111 25676666
Q ss_pred HHHH
Q 011367 86 DQRV 89 (487)
Q Consensus 86 d~~l 89 (487)
.+.+
T Consensus 173 ~e~f 176 (513)
T PRK10854 173 AQLY 176 (513)
T ss_pred Hhhh
Confidence 5543
No 99
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=88.15 E-value=15 Score=37.07 Aligned_cols=81 Identities=20% Similarity=0.168 Sum_probs=54.2
Q ss_pred EecHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCcCCcCE-EEEEcCCCCcHHHHHHHHhhcCCCCCC-CCCCchhHHhhh
Q 011367 148 PLTRARFEELNNDLFRKTM-GPVKKAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPN-KGVNPDEAVAYG 224 (487)
Q Consensus 148 ~itr~~fe~~~~~~~~~~~-~~i~~~l~~~~~~~~~i~~-V~LvGG~s~ip~v~~~l~~~f~~~~~~-~~~~p~~aVa~G 224 (487)
.-.+.++-..++..+++++ ..++.++++.+ ++. |.|.||.+..-..-..|.+..+-.++. .+.-.|.-+|.|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4566777777777776664 55666666655 455 999999999888888888774223333 344558999999
Q ss_pred hhhhhhhcc
Q 011367 225 AAVQGGILS 233 (487)
Q Consensus 225 Aa~~a~~~s 233 (487)
||+++....
T Consensus 207 aA~~~~~~~ 215 (360)
T PF02543_consen 207 AALYAWHEL 215 (360)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999997543
No 100
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=87.50 E-value=1.5 Score=44.04 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCC----CCCchhHHhhhhhhhhh
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~----~~~p~~aVa~GAa~~a~ 230 (487)
++++..+.+=+...|.+.++... ..++.|+++||+++.|++-+.|++.+++..+.. .++|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 44555555555666666666543 337899999999999999999999997644321 23444333344455664
Q ss_pred h
Q 011367 231 I 231 (487)
Q Consensus 231 ~ 231 (487)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.55 E-value=0.79 Score=49.75 Aligned_cols=42 Identities=29% Similarity=0.501 Sum_probs=29.9
Q ss_pred ceeeeechhHHHHHHhccc-cCCCCcEEEEEEeCCCeEEEEEEE
Q 011367 21 NVARIINEPTAAAIAYGLD-KKGGEKNILVFDLGGGTFDVSILT 63 (487)
Q Consensus 21 ~~~~li~Ep~Aaa~~y~~~-~~~~~~~vlv~D~GggT~dvsv~~ 63 (487)
.+..|.+=|.|-.+...+- ....+ +++++||||.|||++++.
T Consensus 254 pv~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 254 PVETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred CeeeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeee
Confidence 4455778888766654433 22223 699999999999999987
No 102
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=86.22 E-value=27 Score=33.46 Aligned_cols=50 Identities=28% Similarity=0.267 Sum_probs=38.0
Q ss_pred CCcCCcCEEEEEcCCCCcHHHHHHHHhhcC---CCCCCCCCCchhHHhhhhhh
Q 011367 178 LEKNQIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 178 ~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~---~~~~~~~~~p~~aVa~GAa~ 227 (487)
.-+..+|.|+|+||.++...+-++|.++.. ...+...-+-.+|.|.|+..
T Consensus 292 vL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 292 VLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred hcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 345779999999999999999999987652 22234445667899999874
No 103
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=85.95 E-value=10 Score=37.75 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 162 FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 162 ~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
++-+.+.+.++++.. .+..|+++||-+...++|++|++..
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 333444445555442 4678999999999999999999987
No 104
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=84.72 E-value=1.7 Score=42.60 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=41.9
Q ss_pred HHHHHcCCceeeeechhHHHHHHh-ccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHH
Q 011367 13 DAGIIAGLNVARIINEPTAAAIAY-GLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 88 (487)
Q Consensus 13 ~Aa~~AGl~~~~li~Ep~Aaa~~y-~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 88 (487)
..-+..|+++ ++++..+=|.+.| +..........+++|+|||+|.++.+.-.+.. .....++|...+.+.
T Consensus 93 ~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~-----~~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 93 EAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG-----EGVSLPLGCVRLTEQ 163 (300)
T ss_pred HHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe-----EEEEEccceEEhHHh
Confidence 3335579886 6787777666655 22222122235999999999999987532211 112245666665554
No 105
>PLN02920 pantothenate kinase 1
Probab=83.68 E-value=4.4 Score=40.71 Aligned_cols=51 Identities=12% Similarity=-0.012 Sum_probs=37.1
Q ss_pred cCCcCEEEEEcCCCCcH-HHHHHHH---hhc--CCCCCCCCCCchhHHhhhhhhhhh
Q 011367 180 KNQIDEIVLVGGSTRIP-KVQQLLK---DYF--DGKEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 180 ~~~i~~V~LvGG~s~ip-~v~~~l~---~~f--~~~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
...++.|+++|.+.+.| ...+.|. .++ ++.+.....+.-..-|.||.+...
T Consensus 295 ~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 295 RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 35689999999999998 6666443 333 233556667888999999987653
No 106
>PRK00976 hypothetical protein; Provisional
Probab=83.10 E-value=7.7 Score=38.15 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=39.0
Q ss_pred CcCEEEEEcCCCCcH--HHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCC
Q 011367 182 QIDEIVLVGGSTRIP--KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 235 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip--~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~ 235 (487)
+++.|+|-||.++.+ .+.+.+++.+. .. ...-...+.++|||+.|....+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-cc--ccccCCchHHHHHHHHHHHHhCC
Confidence 578999999999998 78889988873 22 22234589999999999776544
No 107
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=83.10 E-value=6.1 Score=38.20 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=39.3
Q ss_pred cCEEEEEcC--CCCcH-HHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhhhccCC
Q 011367 183 IDEIVLVGG--STRIP-KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 235 (487)
Q Consensus 183 i~~V~LvGG--~s~ip-~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~~s~~ 235 (487)
...|+|.|- ++++| .|++.|++.|. .++. .+.. ++.|.|+|+.|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V~-~L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLS-CKVL-VLDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhC-CCeE-Eecc-hhhhhhHHHHHHHHhCC
Confidence 348999987 99999 99999999994 3332 2333 78999999999877655
No 108
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=81.92 E-value=12 Score=37.18 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=42.2
Q ss_pred CCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCC----CCCCchhHHhhhhhhhhhhc
Q 011367 178 LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN----KGVNPDEAVAYGAAVQGGIL 232 (487)
Q Consensus 178 ~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~----~~~~p~~aVa~GAa~~a~~~ 232 (487)
......+.++++||+.+.|++...|...+++..+. ..++++..=|.+-|+.|...
T Consensus 286 ~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 286 TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34577899999999999999999999999765443 24577766667767777543
No 109
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=81.82 E-value=4.2 Score=41.68 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=59.1
Q ss_pred EEecHHH-HHHHHHHHHHHHHHHHHHHHHHcCCC-cCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhh
Q 011367 147 EPLTRAR-FEELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYG 224 (487)
Q Consensus 147 ~~itr~~-fe~~~~~~~~~~~~~i~~~l~~~~~~-~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~G 224 (487)
+-|||.. -+.+++..++.+.=.+.++++..... +..++.+-+=||.++..++-+.....+ +.++.++.+ .|..|.|
T Consensus 365 ~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlG 442 (499)
T COG0554 365 FGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALG 442 (499)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHH
Confidence 3444432 24455666666665555555532111 125788888899999999999999999 677776655 5689999
Q ss_pred hhhhhhhccC
Q 011367 225 AAVQGGILSG 234 (487)
Q Consensus 225 Aa~~a~~~s~ 234 (487)
||+.|..-.+
T Consensus 443 aA~lAGla~G 452 (499)
T COG0554 443 AAYLAGLAVG 452 (499)
T ss_pred HHHHHhhhhC
Confidence 9999976554
No 110
>PRK14878 UGMP family protein; Provisional
Probab=81.14 E-value=49 Score=32.71 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.6
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
.+..|+|+||.+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999876
No 111
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=80.80 E-value=11 Score=34.67 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCC-CCCCCCCchhHHhhhhhh
Q 011367 160 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK-EPNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 160 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~-~~~~~~~p~~aVa~GAa~ 227 (487)
.++.-+.+..++++... .-+.|++|||-.+.-.+|+++....... ......|-..|+-.|+-+
T Consensus 237 tvFamLVEiTERAMAh~-----~s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHC-----GSKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHHhhc-----CCCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHH
Confidence 34444444555555543 3468999999999999999998776321 112223445566666543
No 112
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=78.88 E-value=2.4 Score=43.57 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=28.1
Q ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHH
Q 011367 43 GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 85 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 85 (487)
....|+=+|+||||+.+++++-. . ++++. ..++||+-|
T Consensus 141 ~~~~V~NiDIGGGTtN~avf~~G--~--v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 141 HHTVVANIDIGGGTTNIAVFDNG--E--VIDTA-CLDIGGRLI 178 (473)
T ss_pred hCCeEEEEEeCCCceeEEEEECC--E--EEEEE-EEeeccEEE
Confidence 46789999999999999999743 2 33333 367888865
No 113
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=76.33 E-value=1.9 Score=42.43 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=17.7
Q ss_pred cEEEEEEeCCCeEEEEEEEE
Q 011367 45 KNILVFDLGGGTFDVSILTI 64 (487)
Q Consensus 45 ~~vlv~D~GggT~dvsv~~~ 64 (487)
.+++++||||.|||++++.-
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCEEEEEcCccceeeEEecC
Confidence 45999999999999999863
No 114
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=75.14 E-value=5.6 Score=43.78 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=37.2
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhcCC--CCCCCC---CCchhHHhhhhhhhhh
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYFDG--KEPNKG---VNPDEAVAYGAAVQGG 230 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f~~--~~~~~~---~~p~~aVa~GAa~~a~ 230 (487)
.++.|+|+||.++..++++.|.+.+.. .++..+ .--|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999999887732 233222 2348899999988763
No 115
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=70.67 E-value=17 Score=33.41 Aligned_cols=54 Identities=17% Similarity=0.426 Sum_probs=33.5
Q ss_pred CCcEEEEEEeCCCeEEEEEEEEeCC-eEEEEEecCCCC---cchhHHHHHHHHHHHHHHH
Q 011367 43 GEKNILVFDLGGGTFDVSILTIDNG-VFEVLSTNGDTH---LGGEDFDQRVMEYFIKLIK 98 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~~~~-~~~v~~~~~~~~---lGG~~id~~l~~~~~~~~~ 98 (487)
....+|++|+||.++-++++++.+. .+++.......+ .-|.. ..|.+|+.+.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i~ 118 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCIA 118 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHHH
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHHH
Confidence 4568999999999999999999876 343332221111 11111 556677666553
No 116
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=68.72 E-value=23 Score=36.23 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 154 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 154 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
++++-.-+++.+-.++.+.+.++++.+.+|..+.++|-.+....+...=-+.+
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L 107 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGL 107 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHh
Confidence 44555667788888899999999999999999999998876666554433444
No 117
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=65.20 E-value=1.5e+02 Score=29.53 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=34.8
Q ss_pred CCcCEEEEEcCCCCc-HHHHHHHH---hhcC--CCCCCCCCCchhHHhhhhhhhh
Q 011367 181 NQIDEIVLVGGSTRI-PKVQQLLK---DYFD--GKEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 181 ~~i~~V~LvGG~s~i-p~v~~~l~---~~f~--~~~~~~~~~p~~aVa~GAa~~a 229 (487)
..++.|+++|.+-+. |...+.|. .++. ..+.....|...+.|.||.+..
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 568899999999875 67778887 5553 2344556688999999998753
No 118
>PRK07058 acetate kinase; Provisional
Probab=64.83 E-value=71 Score=32.44 Aligned_cols=46 Identities=11% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCC-CcHHHHHHHHhhc
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYF 206 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~ip~v~~~l~~~f 206 (487)
.++-++.++.+.|-...... ..+|.|+++||.+ ..+.||+.|.+.+
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 44445555555555544432 4699999999999 9999999999877
No 119
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=64.42 E-value=14 Score=36.51 Aligned_cols=51 Identities=18% Similarity=0.445 Sum_probs=36.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 151 RARFEELNND----LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 151 r~~fe~~~~~----~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
.++.++++.. .++-+.+..+++|+..+ ++.++++||-+....+|+++.+..
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 3444445543 45555666677777644 567999999999999999998866
No 120
>PRK09604 UGMP family protein; Validated
Probab=63.99 E-value=17 Score=36.23 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=35.9
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhcCC--CCCCCCC---CchhHHhhhhhhhhh
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYFDG--KEPNKGV---NPDEAVAYGAAVQGG 230 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f~~--~~~~~~~---~p~~aVa~GAa~~a~ 230 (487)
.++.|+|+||.++..++++.|.+.+.. .++..+. --|.++++|++-+-.
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 477899999999999999999988732 2232222 348899999884443
No 121
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=61.79 E-value=21 Score=35.23 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=33.0
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhcCC--CCCCCC---CCchhHHhhhhh
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYFDG--KEPNKG---VNPDEAVAYGAA 226 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f~~--~~~~~~---~~p~~aVa~GAa 226 (487)
.++.|+|+||.++..++++.|.+.+.. .++..+ +--|.++++|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 467899999999999999999887622 122222 134788888877
No 122
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=61.24 E-value=62 Score=31.00 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=34.1
Q ss_pred CCcCEEEEEcCCCCcHHHH----HHHHhhcCC----CCC--CCCCCchhHHhhhhhhhhhhccCC
Q 011367 181 NQIDEIVLVGGSTRIPKVQ----QLLKDYFDG----KEP--NKGVNPDEAVAYGAAVQGGILSGE 235 (487)
Q Consensus 181 ~~i~~V~LvGG~s~ip~v~----~~l~~~f~~----~~~--~~~~~p~~aVa~GAa~~a~~~s~~ 235 (487)
...+.|+|.|=++++|.+- +.|++.|.. ..+ ....---.-.|.|||+.|..+++.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 4578899999999987764 455555521 111 111122234788999988766654
No 123
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=59.28 E-value=26 Score=35.89 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=41.4
Q ss_pred ceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHH
Q 011367 143 IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLK 203 (487)
Q Consensus 143 ~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~ 203 (487)
..-.+.||..+..++. ---.-+..-++-+|++++++..+|+.|+|.||++.-=-+.+.+.
T Consensus 289 ~~~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSS-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 3445788999998763 22334566678888999999999999999999998777777765
No 124
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=59.11 E-value=20 Score=38.18 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=36.4
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCC---CchhHHhhhhhhhhhhc
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGIL 232 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f~--~~~~~~~~---~p~~aVa~GAa~~a~~~ 232 (487)
.++.|+|+||.+...++++.|.+.+. +.++..+. ..|.+++.|++.+....
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~ 300 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYK 300 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHH
Confidence 36789999999999999999996652 22333222 44788999888655443
No 125
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=57.91 E-value=3.4 Score=42.39 Aligned_cols=69 Identities=22% Similarity=0.378 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCC-----CC---------CCCCCCchhHHhhhhhhhh
Q 011367 164 KTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG-----KE---------PNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 164 ~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~-----~~---------~~~~~~p~~aVa~GAa~~a 229 (487)
.|+..|..++.. .....-.+.|.+|||+...|.+...|++..-+ .. ..+..||...+=+|||++|
T Consensus 509 sii~sid~~~sd-d~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla 587 (618)
T KOG0797|consen 509 SIISSIDSALSD-DTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILA 587 (618)
T ss_pred hHHHhhhhhccc-hhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhh
Confidence 344455544443 22234457899999999999999999987632 21 1233689998999999998
Q ss_pred hhcc
Q 011367 230 GILS 233 (487)
Q Consensus 230 ~~~s 233 (487)
..-.
T Consensus 588 ~l~~ 591 (618)
T KOG0797|consen 588 ILDF 591 (618)
T ss_pred HHHH
Confidence 6543
No 126
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=56.95 E-value=31 Score=33.60 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=31.9
Q ss_pred CCcCEEEEEcCCCCcHHHHHHHHhhcCC--------CCCCCCCCchhHHhhhhhhhh
Q 011367 181 NQIDEIVLVGGSTRIPKVQQLLKDYFDG--------KEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 181 ~~i~~V~LvGG~s~ip~v~~~l~~~f~~--------~~~~~~~~p~~aVa~GAa~~a 229 (487)
-+++.|+|-||.+..|.+.+.|++.+.. ..+..+...+.+.++|||..+
T Consensus 244 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 244 VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred cCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 4578888888777766666666665521 112233455678999999776
No 127
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=56.61 E-value=36 Score=32.91 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCC------CCCCCCCchhHHhhhhhhhhh
Q 011367 160 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK------EPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 160 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~------~~~~~~~p~~aVa~GAa~~a~ 230 (487)
.++++....+-..+...- ..-+++.|+|-|+.+..+.+.+.+++.+... ++..+...+.+.+.|||..+.
T Consensus 212 ~~~~~~~~~la~~l~~l~-~~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLK-ATLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 344444444444443211 1235788999888887777767777666321 122233456788999998764
No 128
>PF13941 MutL: MutL protein
Probab=54.65 E-value=7.9 Score=40.06 Aligned_cols=40 Identities=38% Similarity=0.532 Sum_probs=27.1
Q ss_pred eeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEE
Q 011367 24 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 63 (487)
Q Consensus 24 ~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~ 63 (487)
.+++-|.|......+-.......+|++|+||-||||-.+.
T Consensus 227 ~i~PTP~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 227 PIMPTPAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred cccCCHHHHHHHHHHHHhcccCCEEEEEccCcccchhhhc
Confidence 4667777665443222221467899999999999997665
No 129
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=51.12 E-value=53 Score=32.93 Aligned_cols=46 Identities=26% Similarity=0.182 Sum_probs=33.9
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhcCCC---CCCCCCCchhHHhhhhhh
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYFDGK---EPNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f~~~---~~~~~~~p~~aVa~GAa~ 227 (487)
++|.|++.||.+..+.+++.|.+.+... .+....+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 6899999999999999999998877322 122233456788888863
No 130
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.38 E-value=85 Score=29.86 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=42.6
Q ss_pred cCCceeeeechhHHHHHHhccccCCCCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHHHHHH
Q 011367 18 AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 96 (487)
Q Consensus 18 AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~~~ 96 (487)
+|-. .-+++.-.||+..+.++.. ....||+|+|-|.+..+++.-+ .+.-+.......+.-..+-..|.+++.-+
T Consensus 203 ~~t~-av~mDskfaav~gal~dpa--a~palvVd~GngHttaalvded--RI~gv~EHHT~~Lspekled~I~rf~~Ge 276 (342)
T COG4012 203 AGTD-AVAMDSKFAAVMGALVDPA--ADPALVVDYGNGHTTAALVDED--RIVGVYEHHTIRLSPEKLEDQIIRFVEGE 276 (342)
T ss_pred cCce-EEEEcchhHhhhhcccCcc--cCceEEEEccCCceEEEEecCC--eEEEEeecccccCCHHHHHHHHHHHHhcc
Confidence 4544 3455555566555555554 3489999999999988887533 33333233334455555555555444433
No 131
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=50.26 E-value=23 Score=34.79 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=28.7
Q ss_pred cCCceeeeechhHHHHHHhccccC-CCCcEEEEEEeCCCeEEEEEE
Q 011367 18 AGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 62 (487)
Q Consensus 18 AGl~~~~li~Ep~Aaa~~y~~~~~-~~~~~vlv~D~GggT~dvsv~ 62 (487)
.|++ +.+.|+..|+|++-..... ...++++++-+|.|- -.+++
T Consensus 97 ~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 97 VGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 4665 5789999999986533222 235678889999775 44444
No 132
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=49.05 E-value=25 Score=34.54 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 165 TMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 165 ~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
+.+.++++++. ..++.|+|+||.++..++++.|.+.+
T Consensus 246 l~~~~~~~~~~-----~g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 246 LIEKTKRALKD-----TGPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33444444444 24678999999999999999998876
No 133
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=48.65 E-value=59 Score=29.01 Aligned_cols=57 Identities=16% Similarity=0.403 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 011367 396 TYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN--QSAEKEDYEEKLKEVEAVCNPIITA 462 (487)
Q Consensus 396 ~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~--~~a~~e~~~~kl~eL~~~~~pi~~r 462 (487)
.|+.+++..|.+ ++++|++++ ++.+++++++. +-.+-++.-+.+-.-++++..+...
T Consensus 5 efL~~L~~~L~~-------lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 5 EFLNELEKYLKK-------LPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHc-------CCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 355666655532 566555554 78888888765 2246677777777777777777654
No 134
>PRK09557 fructokinase; Reviewed
Probab=48.58 E-value=48 Score=32.23 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=30.7
Q ss_pred CCcCEEEEEcCCCCcHHHHHHHHhhcCC--------CCCCCCCCchhHHhhhhhhhh
Q 011367 181 NQIDEIVLVGGSTRIPKVQQLLKDYFDG--------KEPNKGVNPDEAVAYGAAVQG 229 (487)
Q Consensus 181 ~~i~~V~LvGG~s~ip~v~~~l~~~f~~--------~~~~~~~~p~~aVa~GAa~~a 229 (487)
-+++.|+|-||.++.+.+...|++.+.. .++..+.-.+.+.++||++..
T Consensus 243 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 243 LDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred hCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 4578888888888777666666554411 112223334668899998754
No 135
>PLN02377 3-ketoacyl-CoA synthase
Probab=44.60 E-value=55 Score=34.53 Aligned_cols=55 Identities=7% Similarity=0.231 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEE-EcCCCCcHHHHHHHHhhcC
Q 011367 153 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 207 (487)
Q Consensus 153 ~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~s~ip~v~~~l~~~f~ 207 (487)
.++...+....-+...++++|+++++++.+||.|+. +.+....|.+-.+|.+.++
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 345555555566678889999999999999999977 4555568999999999994
No 136
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=42.26 E-value=39 Score=27.80 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCc--HHHHHHHHhhcCC
Q 011367 163 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI--PKVQQLLKDYFDG 208 (487)
Q Consensus 163 ~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~i--p~v~~~l~~~f~~ 208 (487)
......++++|+++++.+.+|+.|..-|-++.. +.=.+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 344677999999999999999999999977775 4445567788843
No 137
>PRK09698 D-allose kinase; Provisional
Probab=42.15 E-value=64 Score=31.30 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCcCEEEEEcCCCCc-----HHHHHHHHhhcC----C--CCCCCCCCchhHHhhhhhhhhh
Q 011367 181 NQIDEIVLVGGSTRI-----PKVQQLLKDYFD----G--KEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 181 ~~i~~V~LvGG~s~i-----p~v~~~l~~~f~----~--~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
-+++.|+|-||.++. +.+++.+++... . .++..+...+.+.++|||..+.
T Consensus 235 ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 235 FDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred hCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 357889888887764 345566665431 1 1233444557788999998764
No 138
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=41.99 E-value=21 Score=36.11 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=17.5
Q ss_pred CcEEEEEEeCCCeEEEEEEE
Q 011367 44 EKNILVFDLGGGTFDVSILT 63 (487)
Q Consensus 44 ~~~vlv~D~GggT~dvsv~~ 63 (487)
...+.|+|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 46899999999999998765
No 139
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.87 E-value=1e+02 Score=29.34 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=13.7
Q ss_pred hhHhHHHHhhhHHHHHHHHHH-Hhh
Q 011367 383 KVKEKIDARNSLETYVYNMKN-QIN 406 (487)
Q Consensus 383 ~~~~~~~a~N~LE~~iy~~r~-~l~ 406 (487)
....+....-+|.+-+++||. +|+
T Consensus 83 ~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444445566667778874 444
No 140
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=41.29 E-value=30 Score=35.27 Aligned_cols=29 Identities=28% Similarity=0.724 Sum_probs=23.7
Q ss_pred CCcEEEEEEeCCCeEEEEEEEEe-CCeEEE
Q 011367 43 GEKNILVFDLGGGTFDVSILTID-NGVFEV 71 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~~-~~~~~v 71 (487)
....+|++|+||..+-++++++. ++.+.+
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 45789999999999999999998 444433
No 141
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=40.42 E-value=2.6e+02 Score=26.61 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCceeeeechhHHHHHHhccccCC-CCcEEEEEEeCCCeEEEEEE
Q 011367 10 ATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSIL 62 (487)
Q Consensus 10 a~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~GggT~dvsv~ 62 (487)
++++++.-+|.+. -+++--.||.+....+... ....++++|+|-|.|=..++
T Consensus 132 av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 132 AVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred HHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEE
Confidence 3444444444444 3344444444433333221 46789999999999888877
No 142
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=39.88 E-value=82 Score=30.55 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEE-EcCCCCcHHHHHHHHhhcC
Q 011367 164 KTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 207 (487)
Q Consensus 164 ~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~s~ip~v~~~l~~~f~ 207 (487)
-+...|+++|+++++.+.+||.++. +..+.-.|.+-.+|.+.|+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 4577889999999999999998665 4778999999999999994
No 143
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=39.39 E-value=4.1e+02 Score=26.61 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 160 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 160 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
.++.-+.+...++++.+.+.+..+...++.||-++..+|+.+|+...
T Consensus 283 tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 283 TVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHH
Confidence 34455556666677766667788889999999999999999998765
No 144
>PF13941 MutL: MutL protein
Probab=39.07 E-value=75 Score=33.03 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=35.7
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchh-HHHHHHHHHHHHHHHHhc
Q 011367 47 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE-DFDQRVMEYFIKLIKKKH 101 (487)
Q Consensus 47 vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~-~id~~l~~~~~~~~~~~~ 101 (487)
+|++|||+.+|-++++....+..++++.+....-=.. |+..-+.+-+ +++.++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~-~~l~~~~ 56 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL-EQLEEQT 56 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH-HHHHHhc
Confidence 7999999999999999977777777766543332233 6655554433 3344333
No 145
>PLN03173 chalcone synthase; Provisional
Probab=38.71 E-value=1.1e+02 Score=31.33 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCC-CcHHHHHHHHhhcC
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 207 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~ip~v~~~l~~~f~ 207 (487)
-..+...+=..+.++++|+++++++.+|+.|+.+.-+. ..|.+--.|.+.++
T Consensus 97 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 33344455556778999999999999999998876444 58999999999984
No 146
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=38.56 E-value=1.3e+02 Score=22.38 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=33.9
Q ss_pred EEEEEEEeCCccEEEEEEecCCCcee-eEEEecCCCCCCHHHHHHHHHHHH
Q 011367 326 IEVTFEVDANGILNVKAEDKGTGKSE-KITITNDKGRLSQEEIDRMVREAE 375 (487)
Q Consensus 326 i~v~f~id~~g~l~v~~~~~~~~~~~-~i~i~~~~~~ls~e~i~~~~~~~~ 375 (487)
....++++.+|.++|...+..+|... .++=-.-....|..+|.+++.+++
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVELTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEEEEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 56788999999999999999888763 221111113456677777776554
No 147
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.44 E-value=90 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.717 Sum_probs=16.9
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHH
Q 011367 429 EALEWLDDN-QSAEKEDYEEKLK 450 (487)
Q Consensus 429 e~~~WL~~~-~~a~~e~~~~kl~ 450 (487)
..++||+++ ...|+++|+++..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 347899876 5689999988754
No 148
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.38 E-value=2.3e+02 Score=23.48 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=38.9
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCC
Q 011367 414 KLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRS-GGAPGAG 474 (487)
Q Consensus 414 ~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~-~~~~~~~ 474 (487)
.+-..++..+...+++-.+.++. ....++.+...|+..+......+.+.. ++.+++|
T Consensus 63 vlv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 63 LLVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred HHhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 33445677777777777777775 467778888888888887777776663 4455555
No 149
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=38.36 E-value=3.3e+02 Score=30.12 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=44.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcC------------CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011367 414 KLESDEKDKIETAVKEALEWLDDN------------QSAEKEDYEEKLKEVEAVCNPIITAVYQR 466 (487)
Q Consensus 414 ~~~~~e~~~i~~~l~e~~~WL~~~------------~~a~~e~~~~kl~eL~~~~~pi~~r~~~~ 466 (487)
.++..+++.|.+.+.+.-.|+.+. +..+.+++.+|.+.|...+.-.++|+...
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~ 838 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIR 838 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 577888999999999999999764 23588999999999999998888886654
No 150
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=37.48 E-value=14 Score=36.13 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=26.1
Q ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHH
Q 011367 43 GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 85 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 85 (487)
+...++=+|+||||+..+++.-.+ +..+. ...+||+-+
T Consensus 143 r~t~v~NlDIGGGTtN~slFD~Gk----v~dTa-CLdiGGRLi 180 (473)
T COG4819 143 RLTRVLNLDIGGGTTNYSLFDAGK----VSDTA-CLDIGGRLI 180 (473)
T ss_pred hceEEEEEeccCCccceeeecccc----cccce-eeecCcEEE
Confidence 456789999999999999886332 22222 255787754
No 151
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=37.11 E-value=87 Score=31.99 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCC-CcHHHHHHHHhhc
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYF 206 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~ip~v~~~l~~~f 206 (487)
+++-++.++.+.|-...... ...+|.|+++||.+ ..+.|++.|.+.+
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l 348 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGL 348 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 44445555555555554432 14699999999999 9999999999877
No 152
>PLN03170 chalcone synthase; Provisional
Probab=36.76 E-value=97 Score=31.71 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCC-CcHHHHHHHHhhcC
Q 011367 153 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 207 (487)
Q Consensus 153 ~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~ip~v~~~l~~~f~ 207 (487)
..+...+...+=..+..+++|+++++.+.+|++|+.+-.+. .+|.+.-.|.+.++
T Consensus 98 r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 98 RQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 33444444555567778999999999999999988776443 69999999999984
No 153
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=36.74 E-value=83 Score=25.43 Aligned_cols=50 Identities=20% Similarity=0.344 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcCE--EEEEcCCCCcHHHHHHHHhhcC
Q 011367 158 NNDLFRKTMGPVKKAMEDAGLEKNQIDE--IVLVGGSTRIPKVQQLLKDYFD 207 (487)
Q Consensus 158 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~--V~LvGG~s~ip~v~~~l~~~f~ 207 (487)
+......+++-|+.+|+.+|.+..+|-. |+|+.-....+.+.+...++|+
T Consensus 31 ~~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 31 FEAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 3456667778888899999988887744 5777655788999999999996
No 154
>PLN03172 chalcone synthase family protein; Provisional
Probab=36.58 E-value=1e+02 Score=31.46 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCC-CcHHHHHHHHhhcC
Q 011367 152 ARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 207 (487)
Q Consensus 152 ~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~ip~v~~~l~~~f~ 207 (487)
+..+...+...+=..+.++++|+++++.+.+|+.|+++..+. .+|.+--.|.+.++
T Consensus 93 ~r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 93 ARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 334444445555566778999999999999999998776554 69999999999984
No 155
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.81 E-value=1.9e+02 Score=27.41 Aligned_cols=58 Identities=21% Similarity=0.411 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHHHHHHH
Q 011367 392 NSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQ-SA---EKEDYEEKLKEVEAVCN 457 (487)
Q Consensus 392 N~LE~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~-~a---~~e~~~~kl~eL~~~~~ 457 (487)
+.||.++..+=..|...+-+ ...++++...+=.||.+|. +. +.+.|+.+.+-++.++.
T Consensus 142 g~le~~m~~iMqqllSKEIL--------yeplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~ 203 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSKEIL--------YEPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIES 203 (267)
T ss_pred ccHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 66777777766555442222 2468888999999999883 32 34444444444444333
No 156
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=35.55 E-value=24 Score=36.46 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred HcCCCcCCcCEEEEEcCC-CCcH--HHHHHHHh
Q 011367 175 DAGLEKNQIDEIVLVGGS-TRIP--KVQQLLKD 204 (487)
Q Consensus 175 ~~~~~~~~i~~V~LvGG~-s~ip--~v~~~l~~ 204 (487)
+.|.+...++.|+-+||. ++.| .....++.
T Consensus 382 q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~ 414 (463)
T TIGR01319 382 QIGKDLLNVKCVIGSGGVLSHASQFDMGEILKA 414 (463)
T ss_pred ccCCCchhCcEEEEeCcceeCCCCcCHHHHHhh
Confidence 445556678899999986 6776 66666644
No 157
>PTZ00297 pantothenate kinase; Provisional
Probab=35.53 E-value=1.2e+02 Score=36.64 Aligned_cols=151 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred EEEEEeCCCeEEEEEEEEe--CCeEEEEEecCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Q 011367 47 ILVFDLGGGTFDVSILTID--NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKR 124 (487)
Q Consensus 47 vlv~D~GggT~dvsv~~~~--~~~~~v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 124 (487)
+|++.+|.| +|+++++ ++.++-++-.+ +||-.| .-+.+|+..|..-.+
T Consensus 1216 ~llvNIGSG---vSi~kv~~~~~~~~RvgGt~---iGGGT~------------------------~GL~~llt~~~~f~e 1265 (1452)
T PTZ00297 1216 CLLVNIGSG---ISIIKCLGPDGSHVRVGGSP---IGGATF------------------------WGLVRTMTNVTSWEE 1265 (1452)
T ss_pred eEEEEccCc---eEEEEEecCCCcEEEecCcc---cccHhH------------------------HHHHHHhcCCCCHHH
Q ss_pred Hc--------cCCceeEEeeecccC------CceeEEEecHHHHHHHH--------------------------------
Q 011367 125 AL--------SSQHQVRVEIESLFD------GIDFSEPLTRARFEELN-------------------------------- 158 (487)
Q Consensus 125 ~L--------s~~~~~~i~i~~~~~------~~~~~~~itr~~fe~~~-------------------------------- 158 (487)
.| ..+...+..+.+++. ...+....+.+-|-++.
T Consensus 1266 ~l~~~~la~~Gd~~~vDllVgDIyg~~~~~~~~~L~~~~iASsfGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1345 (1452)
T PTZ00297 1266 VMEIMRLDGPGDNKNVDLLVGDIYGYNAKDLPAMLSVDTVASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALK 1345 (1452)
T ss_pred HHHHHHHhhCCCccccceEEeeccCCCcccccCCCCcceeeeccCccccccccccccccccccccccccccccccccccc
Q ss_pred -------------------HHHHHHHHHHHHHHHHHc---CCCcCCcCEEEEEcC-CCCcHHHHHHHHhhc-----CCCC
Q 011367 159 -------------------NDLFRKTMGPVKKAMEDA---GLEKNQIDEIVLVGG-STRIPKVQQLLKDYF-----DGKE 210 (487)
Q Consensus 159 -------------------~~~~~~~~~~i~~~l~~~---~~~~~~i~~V~LvGG-~s~ip~v~~~l~~~f-----~~~~ 210 (487)
+++...++.+|-..+-+. .-...+++.|+++|+ ...-|...+.|...+ +..+
T Consensus 1346 ~~~~~~~~~~~~~~~~~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~ 1425 (1452)
T PTZ00297 1346 SPTVISELPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECH 1425 (1452)
T ss_pred ccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCee
Q ss_pred CCCCCCchhHHhhhhhh
Q 011367 211 PNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 211 ~~~~~~p~~aVa~GAa~ 227 (487)
....-+.-..-|.||++
T Consensus 1426 a~fl~hegy~ga~Ga~~ 1442 (1452)
T PTZ00297 1426 AHFLEHDGYLGALGCAT 1442 (1452)
T ss_pred EEEecCccccHHhhhhh
No 158
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.42 E-value=52 Score=32.68 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011367 427 VKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRS 467 (487)
Q Consensus 427 l~e~~~WL~~~~~a~~e~~~~kl~eL~~~~~pi~~r~~~~~ 467 (487)
|+++++||.+++. +++.+.+++.+.++.+.||--++.|.-
T Consensus 10 LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi 49 (379)
T PF11593_consen 10 LEELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQFNEFI 49 (379)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 7788888876555 788888888888888888877766653
No 159
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=35.06 E-value=57 Score=32.22 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=30.5
Q ss_pred CcCEEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCC---CchhHHhhh
Q 011367 182 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYG 224 (487)
Q Consensus 182 ~i~~V~LvGG~s~ip~v~~~l~~~f~--~~~~~~~~---~p~~aVa~G 224 (487)
.+..|+|+||.+...++++.|.+.+. +.++..+. --|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 36789999999999999999998652 22232221 236777777
No 160
>PLN02902 pantothenate kinase
Probab=34.74 E-value=1.5e+02 Score=33.41 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=31.3
Q ss_pred cCCcCEEEEEcCCCCc-----HHHHHHHHhhcCC--CCCCCCCCchhHHhhhhhhhhh
Q 011367 180 KNQIDEIVLVGGSTRI-----PKVQQLLKDYFDG--KEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 180 ~~~i~~V~LvGG~s~i-----p~v~~~l~~~f~~--~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
...++.|+++|.+-|- ..+...+. +|+. .+....-+--..-|.||.+...
T Consensus 344 ~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 344 RFGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred HcCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 3568899999988553 33444444 4422 2344445666788899987664
No 161
>PLN02854 3-ketoacyl-CoA synthase
Probab=34.65 E-value=76 Score=33.63 Aligned_cols=53 Identities=11% Similarity=0.277 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEE-EcCCCCcHHHHHHHHhhcC
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 207 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~s~ip~v~~~l~~~f~ 207 (487)
++..+..-.-+...++++|+++++++.+||.|++ +.+....|.+-.+|.+.++
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 3333333444577788899999999999999987 3455568999999999994
No 162
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=34.61 E-value=83 Score=29.84 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=31.9
Q ss_pred CCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhh
Q 011367 181 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 226 (487)
Q Consensus 181 ~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa 226 (487)
..++.|+| |+|..|++.+.+++.+| ..+ .-+||.+++|+=+.
T Consensus 171 ~~~d~lIL--GCTh~P~l~~~i~~~~~-~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 171 TLPDTVVL--GCTHFPLLKEEIEQYLP-EHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCCEEEE--CcCChHHHHHHHHHHcC-CCc-EEECCHHHHHHHHH
Confidence 35677655 99999999999999984 222 45799888888655
No 163
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.19 E-value=77 Score=34.28 Aligned_cols=44 Identities=30% Similarity=0.617 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhcC--------CCCC---HHHHHHHHHHHHHHHHHHHHH
Q 011367 419 EKDKIETAVKEALEWLDDN--------QSAE---KEDYEEKLKEVEAVCNPIITA 462 (487)
Q Consensus 419 e~~~i~~~l~e~~~WL~~~--------~~a~---~e~~~~kl~eL~~~~~pi~~r 462 (487)
+..+....+++.+.|++.. .+++ .+++..+.++|.+.+.||..+
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~~ 725 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIISK 725 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccccc
Confidence 6677888899999999864 1233 389999999999999999764
No 164
>PLN03168 chalcone synthase; Provisional
Probab=33.13 E-value=1.2e+02 Score=30.87 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCC-CCcHHHHHHHHhhcC
Q 011367 152 ARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFD 207 (487)
Q Consensus 152 ~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-s~ip~v~~~l~~~f~ 207 (487)
+..+-..+...+=..+..+++|+++++.+.+|++|+.+-.+ -.+|.+--.|.+.++
T Consensus 92 ~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 92 VRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 44444455555666788899999999999999999876332 358999999999984
No 165
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.92 E-value=39 Score=32.05 Aligned_cols=73 Identities=27% Similarity=0.345 Sum_probs=44.4
Q ss_pred EEEEEEeCCCeEEEEEEEEe--CCeEE---------------------EEEecCCCCcchhHHHHHHHHHHHHHHHHhcC
Q 011367 46 NILVFDLGGGTFDVSILTID--NGVFE---------------------VLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 102 (487)
Q Consensus 46 ~vlv~D~GggT~dvsv~~~~--~~~~~---------------------v~~~~~~~~lGG~~id~~l~~~~~~~~~~~~~ 102 (487)
++|++|+|.||.|+-.+.-+ ++..- -++-.| ...||--.++++..|+.. |
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhc------C
Confidence 58999999999999877532 11000 112222 457999999999888643 2
Q ss_pred CCCccCHHHHHHHHHHHHHHHHH
Q 011367 103 KDISKDKRAIGKLRREAERAKRA 125 (487)
Q Consensus 103 ~~~~~~~~~~~~L~~~~e~~K~~ 125 (487)
..+.....+..-+.+..|+++..
T Consensus 75 ~rVyatedAAlT~hddleRv~em 97 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEEM 97 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHhh
Confidence 23333444555555556665543
No 166
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=30.99 E-value=59 Score=33.60 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHH-----cCCc----eeeeechhHHHHH-----HhccccCC-------CCcEEEEEEeCCCeEEEEEEE
Q 011367 5 LFLRQATKDAGII-----AGLN----VARIINEPTAAAI-----AYGLDKKG-------GEKNILVFDLGGGTFDVSILT 63 (487)
Q Consensus 5 ~~qR~a~~~Aa~~-----AGl~----~~~li~Ep~Aaa~-----~y~~~~~~-------~~~~vlv~D~GggT~dvsv~~ 63 (487)
..+++++.++++. -++. -+++|+-.+=+.+ .|.+..-. ...++-++||||+++.|+..-
T Consensus 103 ~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~ 182 (434)
T PF01150_consen 103 EEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEP 182 (434)
T ss_dssp HHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEE
T ss_pred hhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeecc
Confidence 3466666666553 2442 3577755544433 34333222 247899999999999999554
Q ss_pred E
Q 011367 64 I 64 (487)
Q Consensus 64 ~ 64 (487)
-
T Consensus 183 ~ 183 (434)
T PF01150_consen 183 S 183 (434)
T ss_dssp T
T ss_pred C
Confidence 3
No 167
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=30.83 E-value=2.1e+02 Score=27.88 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=33.0
Q ss_pred CcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHHHHH
Q 011367 44 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 95 (487)
Q Consensus 44 ~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~~ 95 (487)
...++-+|+||.++.++++......+..........-....+-+.|.+.+.+
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~ 56 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAE 56 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHH
Confidence 4678999999999999999887765444333332223334555555554433
No 168
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=30.57 E-value=2.7e+02 Score=29.23 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=32.6
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeE-EEEEecCCCCcchhHHHHHHH
Q 011367 47 ILVFDLGGGTFDVSILTIDNGVF-EVLSTNGDTHLGGEDFDQRVM 90 (487)
Q Consensus 47 vlv~D~GggT~dvsv~~~~~~~~-~v~~~~~~~~lGG~~id~~l~ 90 (487)
=+-+|+|.+|+-..++.+..+.+ ....+..+.--||+++|.+..
T Consensus 166 GvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 166 GVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 36799999999999999887743 333444445579999988753
No 169
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=30.30 E-value=1.9e+02 Score=27.56 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=33.0
Q ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHH
Q 011367 43 GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 90 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 90 (487)
+...++++|+|..++-+.+.+.....+.+.......--.|.-+|..-.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di~~a 69 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDFIGA 69 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeHHHH
Confidence 467889999999999888877655556565555545556666664433
No 170
>PLN02914 hexokinase
Probab=30.07 E-value=1.6e+02 Score=30.95 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred CCcEEEEEEeCCCeEEEEEEEEeC
Q 011367 43 GEKNILVFDLGGGTFDVSILTIDN 66 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~~~ 66 (487)
....+|.+|+||.++-|..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 345799999999999999999976
No 171
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.97 E-value=2.2e+02 Score=20.66 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHH
Q 011367 389 DARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALE 432 (487)
Q Consensus 389 ~a~N~LE~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~ 432 (487)
.....++..+-.+...|.++ .|....+++-.+.-...+.++..
T Consensus 11 Kel~kl~~~i~~~~~kL~n~-~F~~kAP~eVve~er~kl~~~~~ 53 (66)
T PF10458_consen 11 KELEKLEKEIERLEKKLSNE-NFVEKAPEEVVEKEREKLEELEE 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHCST-THHHHS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCc-cccccCCHHHHHHHHHHHHHHHH
Confidence 34445666777778888764 57777777666655555554444
No 172
>PLN02939 transferase, transferring glycosyl groups
Probab=29.30 E-value=3.7e+02 Score=30.87 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHh
Q 011367 362 LSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLD 435 (487)
Q Consensus 362 ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~ 435 (487)
+=++.+..++.++....+.|+........+.-|++++-++..++.....-...+++-+.+.+.+.++.++..|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 33567777888888888888877777888888888888877776321111224445555555555555555554
No 173
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=29.12 E-value=1.4e+02 Score=29.68 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHH
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQL 201 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~ 201 (487)
...+...+.+..+|+++|++++++..+||.|-.+=|-+-++.++--
T Consensus 45 ~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG 90 (342)
T COG0533 45 LASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVG 90 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHH
Confidence 4556778888999999999999999999999999999999887543
No 174
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=29.07 E-value=99 Score=30.52 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHH
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ 199 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~ 199 (487)
......+.+...|+++|+++++++.+||.|.+.-|-...+.++
T Consensus 41 ~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 41 AAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 3345566778889999999999999999999999887777776
No 175
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=28.97 E-value=27 Score=32.99 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=18.5
Q ss_pred CCcEEEEEEeCCCeEEEEEEEE
Q 011367 43 GEKNILVFDLGGGTFDVSILTI 64 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~ 64 (487)
.....+++|+|+.|+|+--+.-
T Consensus 128 ~~dsci~VD~GSTTtDIIPi~~ 149 (330)
T COG1548 128 IKDSCILVDMGSTTTDIIPIKD 149 (330)
T ss_pred cCCceEEEecCCcccceEeecc
Confidence 4667999999999999987754
No 176
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=28.94 E-value=1.5e+02 Score=30.32 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCC-CcHHHHHHHHhhc
Q 011367 158 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYF 206 (487)
Q Consensus 158 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~ip~v~~~l~~~f 206 (487)
++-++.++.+.|-......+ ..+|.|+++||.+ ..+.||+.|.+.+
T Consensus 306 ~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 306 IKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 33444555555554444321 2599999999999 9999999999877
No 177
>PRK14878 UGMP family protein; Provisional
Probab=28.53 E-value=89 Score=30.92 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHH
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQ 200 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~ 200 (487)
......+.+...++++|+++++++.+||.|.+.-|-...+.++-
T Consensus 40 ~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrv 83 (323)
T PRK14878 40 AAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRV 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHH
Confidence 33455677788899999999999999999999988777777663
No 178
>PLN02192 3-ketoacyl-CoA synthase
Probab=28.40 E-value=1.5e+02 Score=31.48 Aligned_cols=54 Identities=7% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEc-CCCCcHHHHHHHHhhcC
Q 011367 154 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVG-GSTRIPKVQQLLKDYFD 207 (487)
Q Consensus 154 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvG-G~s~ip~v~~~l~~~f~ 207 (487)
+++..+....-+...++++|+++++++.+||.|+... +....|.+-.+|.+.++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 4444444445567888999999999999999987653 23458999999999994
No 179
>PRK00865 glutamate racemase; Provisional
Probab=28.02 E-value=1.3e+02 Score=28.72 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhh
Q 011367 166 MGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 228 (487)
Q Consensus 166 ~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~ 228 (487)
...+.+.++.. ....+|.|+| |+|.+|++.+.+++.++. .+ .-+||..++|.-+.-+
T Consensus 163 ~~~l~~~l~~l--~~~g~d~iIL--GCTh~p~l~~~i~~~~~~-~v-~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 163 LEVLREYLAPL--LAAGIDTLVL--GCTHYPLLKPEIQQVLGE-GV-TLIDSGEAIARRVARL 219 (261)
T ss_pred HHHHHHHHHHH--hcCCCCEEEE--CCcCHHHHHHHHHHHcCC-CC-EEECCHHHHHHHHHHH
Confidence 34445555443 1245777665 999999999999998842 22 3468888888766543
No 180
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=27.92 E-value=64 Score=28.23 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhh
Q 011367 161 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 161 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
+.+++.+-..+.|...|....++ .|+-|=|+-.+|++-+.+.+. -+.|-.|+.||.+.+.
T Consensus 24 It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~---------~~yDaiIaLG~VIrGe 83 (158)
T PRK12419 24 IVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKT---------GRYAAIVAAALVVDGG 83 (158)
T ss_pred HHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEEEEEEcCC
Confidence 34444555556667777766667 678899999999998877542 2457778888888774
No 181
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=27.60 E-value=1e+02 Score=30.14 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHH
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL 202 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l 202 (487)
.......+.+...|+++|+++++++.+|+.|.+.-|-...+.+|--+
T Consensus 43 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~ 89 (305)
T TIGR00329 43 EASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGA 89 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHH
Confidence 34455677888999999999999999999999999999999887544
No 182
>PRK13321 pantothenate kinase; Reviewed
Probab=27.48 E-value=2.3e+02 Score=26.80 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=15.7
Q ss_pred EEEEEeCCCeEEEEEEE
Q 011367 47 ILVFDLGGGTFDVSILT 63 (487)
Q Consensus 47 vlv~D~GggT~dvsv~~ 63 (487)
+|.+|+|++++-+.++.
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 58999999999999987
No 183
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.42 E-value=68 Score=32.33 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCc
Q 011367 158 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI 195 (487)
Q Consensus 158 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~i 195 (487)
++..+..+...|+++|+++++++.+|+++++-+++.++
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~ 303 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM 303 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH
Confidence 44556677788999999999999999999999999775
No 184
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=27.27 E-value=3.4e+02 Score=25.73 Aligned_cols=37 Identities=24% Similarity=0.599 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHHHHHHH
Q 011367 421 DKIETAVKEALEWLDDNQ-SA---EKEDYEEKLKEVEAVCN 457 (487)
Q Consensus 421 ~~i~~~l~e~~~WL~~~~-~a---~~e~~~~kl~eL~~~~~ 457 (487)
..++++.+++-.||..|. .. +.+.|+.++.-+++++.
T Consensus 143 ePmKel~~kyP~wL~~n~~~l~~ed~~rY~~Q~~~v~~I~~ 183 (248)
T PF04614_consen 143 EPMKELRDKYPEWLEENKSKLSAEDYERYEKQYELVKEICA 183 (248)
T ss_dssp HHHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 567788888888887763 33 33344444444444443
No 185
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=27.04 E-value=3.8e+02 Score=28.05 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=22.9
Q ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCe
Q 011367 43 GEKNILVFDLGGGTFDVSILTIDNGV 68 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~~~~~ 68 (487)
....++.+|+||..+-|..+.+.++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 45689999999999999999998763
No 186
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=26.82 E-value=1.6e+02 Score=23.63 Aligned_cols=43 Identities=30% Similarity=0.471 Sum_probs=29.2
Q ss_pred EEEEEEEeCC-ccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHHHH
Q 011367 326 IEVTFEVDAN-GILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEE 376 (487)
Q Consensus 326 i~v~f~id~~-g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~~~ 376 (487)
..+.|.+|.+ |.+.|++.+..||+... .+..+++-++.+.+..
T Consensus 55 ~~l~F~vde~~~~~vVkViD~~T~eVIR--------qIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 55 TSLRFSVDEESGRVVVKVIDKETGEVIR--------QIPPEELLDLAKRLRE 98 (107)
T ss_dssp --EEEEEEEETTEEEEEEEETTT-SEEE--------EE-HHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcEEEEEEECCCCcEEE--------eCCcHHHHHHHHHHHH
Confidence 6788999886 78999999999887633 2457777766655554
No 187
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=26.76 E-value=6.4e+02 Score=25.42 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 011367 83 EDFDQRVMEYFIKLIK 98 (487)
Q Consensus 83 ~~id~~l~~~~~~~~~ 98 (487)
+.+|+.|...+.+++.
T Consensus 13 D~iD~~iv~Ll~~R~~ 28 (374)
T PRK11199 13 DEVDKQLLELLAKRLE 28 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999998887763
No 188
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=25.67 E-value=3.7e+02 Score=21.95 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 011367 364 QEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKE 443 (487)
Q Consensus 364 ~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~a~~e 443 (487)
.+.+.......++....+ .-.+|++.++.+.-.....-.. +.-++.-++.+.+...+..+...+... ++.
T Consensus 25 ~~~i~~~l~~i~~~i~~~----dW~~A~~~~~~l~~~W~k~~~~---~~~~~~h~eid~i~~sl~rl~~~i~~~---dk~ 94 (121)
T PF14276_consen 25 TDSIEEQLEQIEEAIENE----DWEKAYKETEELEKEWDKNKKR---WSILIEHQEIDNIDISLARLKGYIEAK---DKS 94 (121)
T ss_pred HHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhhchh---eeeeecHHHHHHHHHHHHHHHHHHHCC---CHH
Confidence 344555555554443332 2455666666665555444322 455788899999999999999999875 577
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011367 444 DYEEKLKEVEAVCNPIITA 462 (487)
Q Consensus 444 ~~~~kl~eL~~~~~pi~~r 462 (487)
+.-..+..|+..+..|.++
T Consensus 95 ~~l~el~~lk~~i~~i~~~ 113 (121)
T PF14276_consen 95 ESLAELAELKELIEHIPEM 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888899999888888764
No 189
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=25.59 E-value=1.3e+02 Score=30.02 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHH
Q 011367 156 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL 202 (487)
Q Consensus 156 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l 202 (487)
.......+.+...|+++|+++++...+|+.|-.+-|-...+.++=-+
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~ 90 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGA 90 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHH
Confidence 34556778889999999999999999999999999998878776444
No 190
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=25.38 E-value=1.6e+02 Score=27.53 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHh
Q 011367 155 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKD 204 (487)
Q Consensus 155 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~ 204 (487)
+++...+.+.+...+.+.+++.+ .-.|.|.||+|-.+..+.+...
T Consensus 6 ~~l~~~~a~~i~~~i~~~i~~~~-----~~~lalsGGstp~~~y~~L~~~ 50 (233)
T TIGR01198 6 AELAEALAERIATKLQTALAERG-----QFSLALSGGRSPIALLEALAAQ 50 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----cEEEEECCCccHHHHHHHHhhC
Confidence 44555666667777777776532 4579999999999999888864
No 191
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=25.36 E-value=1.3e+02 Score=30.20 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=21.9
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeEEEE
Q 011367 47 ILVFDLGGGTFDVSILTIDNGVFEVL 72 (487)
Q Consensus 47 vlv~D~GggT~dvsv~~~~~~~~~v~ 72 (487)
+||++.|++++.++++..+...++..
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~ 27 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEET 27 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeee
Confidence 79999999999999998877655443
No 192
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=25.35 E-value=1.7e+02 Score=22.64 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=17.2
Q ss_pred EEEEEEeCCCeEEEEEEEEeCC
Q 011367 46 NILVFDLGGGTFDVSILTIDNG 67 (487)
Q Consensus 46 ~vlv~D~GggT~dvsv~~~~~~ 67 (487)
.+|.+|+||..+-++++.-.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC
Confidence 4789999998888888864443
No 193
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=25.14 E-value=3.6e+02 Score=21.65 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=35.4
Q ss_pred EEEEeecCCceeEEEEEEecCccccccCcceeEEEecCCCCCCCCCCeEEEEEEEeC--CccEEEEE
Q 011367 278 QVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDA--NGILNVKA 342 (487)
Q Consensus 278 ~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~--~g~l~v~~ 342 (487)
..|....+....+.|.+|.-+.. .+..||+..+. +.....|. .+...|.+.. .|.|++..
T Consensus 54 f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~-~~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 54 FEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGE-KVRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred EEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCC-cEEEEEECCCCCCceEEEEE
Confidence 34444333344578888875543 56789998876 44333443 3666677665 36666643
No 194
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=25.02 E-value=2.5e+02 Score=27.23 Aligned_cols=46 Identities=28% Similarity=0.434 Sum_probs=37.3
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCC
Q 011367 147 EPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTR 194 (487)
Q Consensus 147 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ 194 (487)
-.+|.++|++.+.|.+.+|++.+++-|.+.++ ..|-.|+..-|+..
T Consensus 218 geLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~--~~vPmi~fakG~g~ 263 (359)
T KOG2872|consen 218 GELSPEDFEEFSLPYLRQIAEAVKKRLPELGL--APVPMILFAKGSGG 263 (359)
T ss_pred ccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcC--CCCceEEEEcCcch
Confidence 35799999999999999999999999998765 34667777766543
No 195
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=24.95 E-value=2.9e+02 Score=29.29 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=41.5
Q ss_pred HHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011367 398 VYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN----QSAEKEDYEEKLKEVEAVCNPIITAV 463 (487)
Q Consensus 398 iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~----~~a~~e~~~~kl~eL~~~~~pi~~r~ 463 (487)
+....+.+-.+ +=...+|++++++|++.|.++..-++.. .+.-..++-+|.++|......+-+|+
T Consensus 582 i~~f~qF~WRP-RPps~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElvekrRqlm~~f~~yR~~~ 650 (698)
T KOG2314|consen 582 IDRFKQFLWRP-RPPSLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVEKRRQLMEQFTEYREKI 650 (698)
T ss_pred HHHHHhhccCC-CCCcccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555443 3345889999999999999999888754 22233455556666665555555443
No 196
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=24.67 E-value=1.3e+02 Score=29.72 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHH------hhcCCCCCCCCCCchhHHhhh
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLK------DYFDGKEPNKGVNPDEAVAYG 224 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~------~~f~~~~~~~~~~p~~aVa~G 224 (487)
......+.+...|+++|+++++...+|+.|.++-|-...+.+|--+. ..+ + .+...++-.++.|..
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~-~-~p~~~v~h~~aha~~ 116 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALAL-N-KPLIGVNHLEGHLLA 116 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHh-C-CCEEecccHHHHHHh
Confidence 44566778888999999999999999999999999999998875553 222 2 233445555666543
No 197
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=24.50 E-value=2.3e+02 Score=26.23 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcCCCC--cHHHHHHHHhhcCC
Q 011367 165 TMGPVKKAMEDAGLEKNQIDEIVLVGGSTR--IPKVQQLLKDYFDG 208 (487)
Q Consensus 165 ~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~--ip~v~~~l~~~f~~ 208 (487)
....++++|+++++++.+|+.|++...... .|.....|...++-
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 356778899999999999999987765444 58888888888843
No 198
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=24.32 E-value=67 Score=27.54 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHhhhhhhhhh
Q 011367 160 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 230 (487)
Q Consensus 160 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~ 230 (487)
.+.+++.+-..+.|...+....+++ |+-|=|+-.+|+.-+.+.+. -+.|-.|+.||.+.+.
T Consensus 20 ~I~~~Ll~ga~~~l~~~gv~~~~i~-v~~VPGa~EiP~a~~~l~~s---------~~~DavIaLG~VIrGe 80 (141)
T PLN02404 20 IITKNLLEGALETFKRYSVKEENID-VVWVPGSFEIPVVAQRLAKS---------GKYDAILCIGAVIRGD 80 (141)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceE-EEEcCcHHHHHHHHHHHHhc---------CCCCEEEEEEEEEeCC
Confidence 4556666666777777776655454 66888999999998877542 1346677778777664
No 199
>PTZ00107 hexokinase; Provisional
Probab=23.95 E-value=87 Score=32.70 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCcEEEEEEeCCCeEEEEEEEEeCC
Q 011367 43 GEKNILVFDLGGGTFDVSILTIDNG 67 (487)
Q Consensus 43 ~~~~vlv~D~GggT~dvsv~~~~~~ 67 (487)
....+|.+|+||.++-|.++++.+.
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 4567999999999999999999764
No 200
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=23.79 E-value=1.4e+02 Score=28.58 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhh--c--CCCCCCCCCCchhHHhhhhhh
Q 011367 159 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY--F--DGKEPNKGVNPDEAVAYGAAV 227 (487)
Q Consensus 159 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~--f--~~~~~~~~~~p~~aVa~GAa~ 227 (487)
+...+.+...|+++|++++++..+||.|.+.-|-+....||--+.-. + .-..+...++-.++.+..+.+
T Consensus 27 r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~~~Pli~v~~l~a~a~~~~~ 99 (268)
T PF00814_consen 27 RQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALALNIPLIGVSHLEAHALSARL 99 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHhCCCeEeeccHHHHHHhHhh
Confidence 45667778999999999999999999999999988888886554321 1 012233445666666555543
No 201
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.58 E-value=1.8e+02 Score=22.94 Aligned_cols=50 Identities=12% Similarity=0.310 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcCE-EEEEcCCCCcHHHHHHHHhhcC
Q 011367 158 NNDLFRKTMGPVKKAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFD 207 (487)
Q Consensus 158 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~-V~LvGG~s~ip~v~~~l~~~f~ 207 (487)
++....++++-|+..|+.+|.+..+|-. -+.+-..+..+.+.+...++|+
T Consensus 24 ~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 24 VEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 3456677788889999999998887633 2333457888999999999995
No 202
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=23.02 E-value=71 Score=30.78 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=34.3
Q ss_pred HHHHHHHcCCceeeeechhHHHHHHhccccCC-----------CCcEEEEEEeCCCeEEE
Q 011367 11 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-----------GEKNILVFDLGGGTFDV 59 (487)
Q Consensus 11 ~~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~-----------~~~~vlv~D~GggT~dv 59 (487)
+-+-.-..|+..-+++-+||-+|+.||++..- +++.-|-+=+-+|||..
T Consensus 268 LNrkllk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNA 327 (403)
T COG2069 268 LNRKLLKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNA 327 (403)
T ss_pred HHHHHHHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcch
Confidence 33344457899999999999999999987542 34455555566666554
No 203
>PLN02932 3-ketoacyl-CoA synthase
Probab=22.83 E-value=2.2e+02 Score=29.96 Aligned_cols=56 Identities=14% Similarity=0.291 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEE-cCCCCcHHHHHHHHhhcC
Q 011367 152 ARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLV-GGSTRIPKVQQLLKDYFD 207 (487)
Q Consensus 152 ~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~Lv-GG~s~ip~v~~~l~~~f~ 207 (487)
..++...+..-.-+...++++|+++++++.+|+.|+++ ..+...|.+-.+|.+.++
T Consensus 139 ~~~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lG 195 (478)
T PLN02932 139 QNLAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFK 195 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhC
Confidence 34555555556666788999999999999999998765 333579999999999994
No 204
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=22.37 E-value=3.8e+02 Score=20.84 Aligned_cols=66 Identities=15% Similarity=0.349 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHh--chhhHhHHHHhhhHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcC
Q 011367 365 EEIDRMVREAEEFAEE--DKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN 437 (487)
Q Consensus 365 e~i~~~~~~~~~~~~~--D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~ 437 (487)
+++..++..++.+... +.-.....+++..++..+..++..+.+ . ...-++...+....+++|+.++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~---~----~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED---A----ADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHC
Confidence 3445555544444221 222334455666666666666666654 1 1223445566666666666655
No 205
>PRK13318 pantothenate kinase; Reviewed
Probab=21.74 E-value=3.4e+02 Score=25.66 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.8
Q ss_pred EEEEEeCCCeEEEEEEE
Q 011367 47 ILVFDLGGGTFDVSILT 63 (487)
Q Consensus 47 vlv~D~GggT~dvsv~~ 63 (487)
+|.+|+|+..+-++++.
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 68899999999999998
No 206
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.35 E-value=2.4e+02 Score=23.32 Aligned_cols=50 Identities=10% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcCE--EEEEcCCC-----CcHHHHHHHHhhcCC
Q 011367 159 NDLFRKTMGPVKKAMEDAGLEKNQIDE--IVLVGGST-----RIPKVQQLLKDYFDG 208 (487)
Q Consensus 159 ~~~~~~~~~~i~~~l~~~~~~~~~i~~--V~LvGG~s-----~ip~v~~~l~~~f~~ 208 (487)
+....++++-|+.+|+.+|....+|=. +++++... .++.+.+...++|+.
T Consensus 40 ~~Q~~~~l~ni~~~L~~aG~~~~dVvk~~vyl~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (126)
T cd06151 40 ETQTISVLKRIETILQSQGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGT 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecCccccchhhHHHHHHHHHHHhcc
Confidence 345667778888999999988777633 67776444 688888888999953
No 207
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=21.31 E-value=96 Score=28.12 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCC----------------------------ceeeeechhHHH
Q 011367 3 LSLFLRQATKDAGIIAGL----------------------------NVARIINEPTAA 32 (487)
Q Consensus 3 f~~~qR~a~~~Aa~~AGl----------------------------~~~~li~Ep~Aa 32 (487)
.+..||+.+..|+...|+ +++-|++||.||
T Consensus 102 L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 102 LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 466788888888887776 467788999887
No 208
>PRK09604 UGMP family protein; Validated
Probab=21.13 E-value=2e+02 Score=28.52 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHH
Q 011367 159 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL 202 (487)
Q Consensus 159 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l 202 (487)
....+.+...|+++|+++++++.+|+.|....|-...+.+|--+
T Consensus 49 ~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~ 92 (332)
T PRK09604 49 RAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGV 92 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHH
Confidence 45566778889999999999999999999999999999986554
No 209
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.10 E-value=2.3e+02 Score=27.71 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhhc
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 206 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~f 206 (487)
++...+..+...++++|+++++.+.+|+.+++-.++ +.+.+.+.+.+
T Consensus 219 ~~~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~l 265 (325)
T PRK12879 219 VFKWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKL 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHc
Confidence 444445667788999999999999999999998776 44456677766
No 210
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=21.07 E-value=2.4e+02 Score=25.60 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhh
Q 011367 159 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY 205 (487)
Q Consensus 159 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~ 205 (487)
+.+-+.+...+.+.+++. ..-.|.|.||+|-.+..+.+....
T Consensus 3 ~~~a~~i~~~i~~~i~~~-----~~~~i~LsgGstp~~~y~~L~~~~ 44 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAER-----GRAVIALSGGSTPKPLYQELAKLH 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHC-----SSEEEEE--SCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-----CCEEEEEcCCHHHHHHHHHHhhhc
Confidence 445566677777777663 345789999999998888888765
No 211
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.71 E-value=2.7e+02 Score=22.66 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CCcCCcC--EEEEEcCC--CCcHHHHHHHHhhcCC
Q 011367 158 NNDLFRKTMGPVKKAMEDAG-LEKNQID--EIVLVGGS--TRIPKVQQLLKDYFDG 208 (487)
Q Consensus 158 ~~~~~~~~~~~i~~~l~~~~-~~~~~i~--~V~LvGG~--s~ip~v~~~l~~~f~~ 208 (487)
++.....+++-|+.+|+.+| ....+|= .|+|+.-. ...+.+.+...++|++
T Consensus 32 ~~~Q~~~~~~Nl~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~~~~~~~~~f~~ 87 (114)
T cd06152 32 LEEEIDQAFDNVELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGLMVENFKKWMPN 87 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHHHHHHHHHHcCC
Confidence 45566777888899999999 9888873 36777642 6788888888888853
No 212
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=20.59 E-value=6.1e+02 Score=22.55 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=26.8
Q ss_pred CCCCCCeEEEEEEEeCCccEEEEEEecCCCc--eeeEEEec
Q 011367 319 APRGTPQIEVTFEVDANGILNVKAEDKGTGK--SEKITITN 357 (487)
Q Consensus 319 ~~~g~~~i~v~f~id~~g~l~v~~~~~~~~~--~~~i~i~~ 357 (487)
.|+|..--.|+-.|+.+|+|+|+|.-..... ...|.|..
T Consensus 123 LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 123 LPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred CCCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 3566555678899999999999997654332 44455544
No 213
>PHA02105 hypothetical protein
Probab=20.55 E-value=2.4e+02 Score=19.90 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=24.6
Q ss_pred EEEecHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 011367 146 SEPLTRARFEELNN-------DLFRKTMGPVKKAMEDAGLEKNQIDEIVLV 189 (487)
Q Consensus 146 ~~~itr~~fe~~~~-------~~~~~~~~~i~~~l~~~~~~~~~i~~V~Lv 189 (487)
.+.+||++|++... |+-.++++.++.+. +..+|.+|.|.
T Consensus 2 qiklt~~~~~~a~~~ndq~eyp~~~e~~~ql~svf-----sipqi~yvyls 47 (68)
T PHA02105 2 QIKLTKEDWESAKYQNDQNEYPVELELFDQLKTVF-----SIPQIKYVYLS 47 (68)
T ss_pred ceeecHHHHHHHHHcCccccccccHHHHHHHHHhc-----cccceEEEEEe
Confidence 35778888887665 44455555555443 34667888875
No 214
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=20.49 E-value=3.3e+02 Score=22.65 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=29.0
Q ss_pred EEEEEEEeCC-ccEEEEEEecCCCceeeEEEecCCCCCCHHHHHHHHHHH
Q 011367 326 IEVTFEVDAN-GILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREA 374 (487)
Q Consensus 326 i~v~f~id~~-g~l~v~~~~~~~~~~~~i~i~~~~~~ls~e~i~~~~~~~ 374 (487)
-.+.|++|.. |.+-|+..+.+||+... ...++++-++.+.+
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVIR--------qIPpee~L~l~~r~ 108 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVIR--------QIPPEEALELAARM 108 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcchh--------hCChHHHHHHHHHH
Confidence 4678999775 89999999999987643 35566655554443
No 215
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=20.45 E-value=1.4e+02 Score=29.52 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=0.0
Q ss_pred EEEEeCCCeEEEEEEEEeCCeEEEEEecCCCCcchhHHHHHHHHHHHH
Q 011367 48 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 95 (487)
Q Consensus 48 lv~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~~~~ 95 (487)
||.|+||..+-+.++.......+......-..-.=..|+..|.+|+.+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~l~~ 48 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPSADFPSFEDALADYLAE 48 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEGCCCCHHHHHHHHHHHH
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEecCCcCCHHHHHHHHHHh
No 216
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.43 E-value=7.6e+02 Score=24.28 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHhchhhHhHHHHhhhHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHHHHHhcCCC--
Q 011367 362 LSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQS-- 439 (487)
Q Consensus 362 ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~-- 439 (487)
.+++++.++++++.. .+...........+++.-+-..+..|.. ...++..+...+.+++.-+.....
T Consensus 201 ~d~~eL~~lk~~l~~---~~~ei~~~~~~l~e~~~~l~~l~~~I~~--------~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 201 CDPTELDRAKEKLKK---LLQEIMIKVKKLEELEEELQELESKIED--------LTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred CCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456667766654443 2333333333334444444455555543 335677888888888888776532
Q ss_pred -CCHHHHHHHHHHHHHH
Q 011367 440 -AEKEDYEEKLKEVEAV 455 (487)
Q Consensus 440 -a~~e~~~~kl~eL~~~ 455 (487)
.....++++++.|+++
T Consensus 270 ~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 270 FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3455555555555544
No 217
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=20.31 E-value=95 Score=23.34 Aligned_cols=15 Identities=13% Similarity=-0.150 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHH
Q 011367 2 LLSLFLRQATKDAGI 16 (487)
Q Consensus 2 ~f~~~qR~a~~~Aa~ 16 (487)
||++.||..++++..
T Consensus 44 FWs~sQ~~FL~E~~~ 58 (74)
T PF10982_consen 44 FWSPSQAAFLREALE 58 (74)
T ss_dssp TS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 799999999999865
No 218
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=20.06 E-value=1.5e+02 Score=27.44 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcCCCCcHHHHHHHHhh
Q 011367 157 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY 205 (487)
Q Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ip~v~~~l~~~ 205 (487)
+...+.+.+...+.+.+++. ..-.|.|.||++-.+..+.+....
T Consensus 3 l~~~~a~~i~~~i~~~i~~~-----~~~~l~lsGGstp~~~y~~L~~~~ 46 (219)
T cd01400 3 LAEALADRIAEALAAAIAKR-----GRFSLALSGGSTPKPLYELLAAAP 46 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CeEEEEECCCccHHHHHHHhcccc
Confidence 44555666777777777653 234799999999999988887654
Done!