Query 011368
Match_columns 487
No_of_seqs 483 out of 2525
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 00:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.5E-53 3.2E-58 361.2 28.1 323 27-486 110-479 (480)
2 KOG1354 Serine/threonine prote 100.0 4.3E-50 9.4E-55 335.9 22.8 428 8-487 6-433 (433)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-46 8.5E-51 320.2 23.8 286 27-487 170-459 (459)
4 KOG0271 Notchless-like WD40 re 100.0 2.9E-45 6.3E-50 310.9 24.0 285 29-447 154-479 (480)
5 COG5170 CDC55 Serine/threonine 100.0 1.6E-41 3.5E-46 281.1 18.1 445 12-487 6-459 (460)
6 KOG0318 WD40 repeat stress pro 100.0 2.4E-38 5.2E-43 279.6 37.8 373 11-487 177-559 (603)
7 KOG0279 G protein beta subunit 100.0 7.7E-39 1.7E-43 261.2 31.5 297 27-486 10-311 (315)
8 KOG0286 G-protein beta subunit 100.0 2.7E-38 5.9E-43 259.6 30.8 290 27-486 50-343 (343)
9 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-40 7.2E-45 283.8 18.4 242 27-398 212-458 (459)
10 KOG0319 WD40-repeat-containing 100.0 2.7E-38 6E-43 290.0 30.0 381 30-485 103-615 (775)
11 KOG0315 G-protein beta subunit 100.0 1.8E-37 3.9E-42 249.0 28.2 289 45-468 11-309 (311)
12 KOG0279 G protein beta subunit 100.0 7.3E-37 1.6E-41 249.7 27.0 252 28-400 59-313 (315)
13 KOG0291 WD40-repeat-containing 100.0 1E-35 2.2E-40 273.6 37.6 368 28-487 141-549 (893)
14 KOG0263 Transcription initiati 100.0 4.3E-37 9.3E-42 285.0 26.7 266 32-402 378-651 (707)
15 KOG0265 U5 snRNP-specific prot 100.0 4.4E-36 9.5E-41 247.6 28.4 285 28-484 43-334 (338)
16 KOG0315 G-protein beta subunit 100.0 4.8E-36 1E-40 240.8 27.5 270 28-420 35-307 (311)
17 KOG0273 Beta-transducin family 100.0 5.1E-36 1.1E-40 261.5 29.9 332 27-484 173-519 (524)
18 KOG0284 Polyadenylation factor 100.0 7.8E-38 1.7E-42 268.0 17.6 277 33-446 97-377 (464)
19 KOG0286 G-protein beta subunit 100.0 1.6E-35 3.4E-40 243.4 27.2 244 32-398 97-343 (343)
20 KOG0284 Polyadenylation factor 100.0 5.1E-37 1.1E-41 263.1 17.8 275 113-486 96-378 (464)
21 KOG0295 WD40 repeat-containing 100.0 6.2E-36 1.3E-40 252.9 24.0 283 28-447 104-404 (406)
22 KOG0645 WD40 repeat protein [G 100.0 2.4E-34 5.1E-39 234.0 31.6 294 28-486 10-309 (312)
23 KOG0293 WD40 repeat-containing 100.0 1.3E-35 2.8E-40 254.7 24.8 287 30-449 222-513 (519)
24 KOG0316 Conserved WD40 repeat- 100.0 4.3E-35 9.3E-40 233.5 25.8 280 30-486 15-297 (307)
25 KOG0273 Beta-transducin family 100.0 8.5E-35 1.8E-39 253.9 29.8 283 28-400 231-523 (524)
26 KOG0285 Pleiotropic regulator 100.0 2.6E-35 5.7E-40 248.5 25.6 253 12-403 139-392 (460)
27 KOG0291 WD40-repeat-containing 100.0 1.4E-33 3.1E-38 259.6 38.2 373 31-487 95-507 (893)
28 KOG0296 Angio-associated migra 100.0 7.5E-34 1.6E-38 240.5 30.1 331 28-486 60-396 (399)
29 KOG0276 Vesicle coat complex C 100.0 1.8E-34 3.9E-39 260.1 27.5 267 28-423 9-279 (794)
30 KOG0266 WD40 repeat-containing 100.0 1E-33 2.3E-38 269.9 33.0 289 31-486 158-452 (456)
31 KOG0306 WD40-repeat-containing 100.0 1.5E-33 3.2E-38 259.4 32.3 387 27-486 102-662 (888)
32 KOG0319 WD40-repeat-containing 100.0 3.7E-33 8E-38 256.5 30.7 372 31-487 61-576 (775)
33 cd00200 WD40 WD40 domain, foun 100.0 4.1E-32 8.9E-37 247.1 37.2 280 30-486 7-289 (289)
34 KOG0263 Transcription initiati 100.0 2.3E-34 5E-39 267.0 22.0 266 114-448 379-648 (707)
35 KOG0281 Beta-TrCP (transducin 100.0 6.2E-35 1.3E-39 245.4 15.6 234 31-403 196-431 (499)
36 KOG0318 WD40 repeat stress pro 100.0 1E-31 2.3E-36 237.8 36.7 334 23-487 138-516 (603)
37 PLN00181 protein SPA1-RELATED; 100.0 6.5E-32 1.4E-36 277.0 41.3 304 26-486 477-791 (793)
38 KOG0295 WD40 repeat-containing 100.0 3.6E-33 7.8E-38 236.2 21.9 274 114-485 109-403 (406)
39 KOG0278 Serine/threonine kinas 100.0 1.5E-33 3.1E-38 226.8 18.2 280 29-447 11-295 (334)
40 KOG0282 mRNA splicing factor [ 100.0 9.3E-34 2E-38 248.3 17.9 286 28-446 210-502 (503)
41 KOG0283 WD40 repeat-containing 100.0 4.1E-32 8.8E-37 254.3 25.4 276 30-401 265-577 (712)
42 KOG0282 mRNA splicing factor [ 100.0 7.1E-33 1.5E-37 242.8 18.9 290 91-486 204-503 (503)
43 KOG0313 Microtubule binding pr 100.0 1.7E-31 3.8E-36 227.2 25.8 273 22-414 95-390 (423)
44 KOG0772 Uncharacterized conser 100.0 1.4E-31 3E-36 236.3 25.0 311 28-486 163-485 (641)
45 KOG0275 Conserved WD40 repeat- 100.0 3.5E-32 7.6E-37 226.9 19.9 291 32-447 213-507 (508)
46 KOG1407 WD40 repeat protein [F 100.0 4.2E-31 9E-36 214.0 25.4 277 27-480 15-293 (313)
47 KOG0645 WD40 repeat protein [G 100.0 1.3E-30 2.7E-35 212.4 26.7 244 30-400 59-311 (312)
48 KOG0306 WD40-repeat-containing 100.0 1.4E-30 3.1E-35 239.9 29.8 360 32-486 65-578 (888)
49 KOG0292 Vesicle coat complex C 100.0 4.9E-31 1.1E-35 246.9 27.0 280 31-423 8-302 (1202)
50 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-29 3.6E-34 210.9 32.7 267 32-423 14-285 (311)
51 KOG0265 U5 snRNP-specific prot 100.0 6.9E-31 1.5E-35 217.0 23.9 253 91-487 37-295 (338)
52 KOG0310 Conserved WD40 repeat- 100.0 1.9E-30 4.1E-35 228.1 25.9 301 1-484 1-304 (487)
53 KOG0285 Pleiotropic regulator 100.0 4.2E-31 9.2E-36 223.1 20.3 290 84-486 134-437 (460)
54 KOG0293 WD40 repeat-containing 100.0 5.7E-31 1.2E-35 226.3 21.0 286 94-486 217-511 (519)
55 KOG0276 Vesicle coat complex C 100.0 1.3E-30 2.7E-35 235.4 24.0 275 114-486 14-296 (794)
56 KOG0296 Angio-associated migra 100.0 5.6E-30 1.2E-34 217.1 25.0 292 24-446 98-395 (399)
57 PTZ00421 coronin; Provisional 100.0 4E-29 8.6E-34 237.2 33.5 301 15-424 5-314 (493)
58 KOG0277 Peroxisomal targeting 100.0 3.2E-30 7E-35 208.1 21.8 239 202-486 58-307 (311)
59 KOG0266 WD40 repeat-containing 100.0 7.2E-30 1.6E-34 243.6 28.1 248 28-400 199-454 (456)
60 KOG0640 mRNA cleavage stimulat 100.0 2.8E-30 6.2E-35 214.2 21.6 311 27-446 107-423 (430)
61 KOG0277 Peroxisomal targeting 100.0 1.9E-30 4.2E-35 209.3 19.0 243 32-399 60-308 (311)
62 KOG0643 Translation initiation 100.0 7.4E-30 1.6E-34 207.5 22.1 291 26-402 4-319 (327)
63 KOG0643 Translation initiation 100.0 4.8E-29 1E-33 202.8 26.5 285 96-484 5-313 (327)
64 KOG0973 Histone transcription 100.0 3.7E-29 8E-34 240.5 28.4 314 32-485 13-352 (942)
65 KOG0268 Sof1-like rRNA process 100.0 2.3E-30 4.9E-35 219.2 17.6 292 16-487 50-344 (433)
66 KOG0292 Vesicle coat complex C 100.0 3.5E-28 7.6E-33 228.0 30.2 253 28-401 47-322 (1202)
67 KOG0288 WD40 repeat protein Ti 100.0 5.4E-30 1.2E-34 220.4 16.6 283 28-446 171-458 (459)
68 KOG0299 U3 snoRNP-associated p 100.0 2.5E-28 5.4E-33 213.2 25.9 270 30-402 140-412 (479)
69 KOG0647 mRNA export protein (c 100.0 1.3E-27 2.8E-32 197.8 27.7 269 32-423 27-303 (347)
70 cd00200 WD40 WD40 domain, foun 100.0 1.6E-27 3.4E-32 216.8 30.6 241 28-398 47-289 (289)
71 KOG0316 Conserved WD40 repeat- 100.0 1.5E-28 3.3E-33 196.2 20.7 244 94-448 10-256 (307)
72 KOG0305 Anaphase promoting com 100.0 3.1E-28 6.6E-33 222.6 25.6 240 32-402 217-463 (484)
73 PLN00181 protein SPA1-RELATED; 100.0 1.9E-27 4.1E-32 244.1 34.3 257 29-399 529-792 (793)
74 KOG0283 WD40 repeat-containing 100.0 3.3E-28 7.2E-33 228.2 25.8 264 112-415 266-546 (712)
75 KOG0281 Beta-TrCP (transducin 100.0 2.6E-29 5.7E-34 211.6 16.1 240 27-404 232-481 (499)
76 KOG0313 Microtubule binding pr 100.0 4.8E-28 1E-32 206.4 22.2 273 28-400 140-418 (423)
77 KOG1408 WD40 repeat protein [F 100.0 3E-27 6.4E-32 216.9 27.3 364 35-487 327-712 (1080)
78 PTZ00420 coronin; Provisional 100.0 2E-26 4.3E-31 219.7 33.3 240 93-424 66-317 (568)
79 KOG1036 Mitotic spindle checkp 100.0 2.1E-26 4.5E-31 191.5 28.3 276 32-478 13-293 (323)
80 KOG0289 mRNA splicing factor [ 100.0 1.2E-26 2.6E-31 201.2 26.7 244 32-402 219-464 (506)
81 KOG1063 RNA polymerase II elon 100.0 3.1E-26 6.7E-31 209.7 29.9 411 26-486 185-697 (764)
82 KOG0310 Conserved WD40 repeat- 100.0 6.5E-27 1.4E-31 205.9 23.9 241 32-402 68-311 (487)
83 KOG0640 mRNA cleavage stimulat 100.0 8.3E-27 1.8E-31 193.8 23.1 296 114-486 113-424 (430)
84 KOG0305 Anaphase promoting com 100.0 1.7E-26 3.6E-31 211.2 27.0 271 35-486 180-459 (484)
85 KOG0772 Uncharacterized conser 100.0 3.3E-27 7.2E-32 208.9 21.6 224 114-406 168-400 (641)
86 KOG0641 WD40 repeat protein [G 100.0 5E-25 1.1E-29 175.2 31.7 309 29-400 29-349 (350)
87 KOG0275 Conserved WD40 repeat- 100.0 4.1E-28 8.8E-33 202.7 14.5 283 114-486 214-507 (508)
88 KOG1063 RNA polymerase II elon 100.0 3.9E-26 8.4E-31 209.0 28.5 405 28-486 50-646 (764)
89 KOG0274 Cdc4 and related F-box 100.0 1.4E-26 3.1E-31 220.0 26.6 270 31-448 207-481 (537)
90 PTZ00421 coronin; Provisional 100.0 5.1E-26 1.1E-30 216.1 30.4 220 28-352 71-299 (493)
91 KOG0294 WD40 repeat-containing 100.0 2.4E-26 5.2E-31 191.5 23.9 253 10-402 27-283 (362)
92 KOG2048 WD40 repeat protein [G 100.0 3.7E-25 8E-30 202.3 33.7 326 32-486 25-409 (691)
93 PTZ00420 coronin; Provisional 100.0 6.4E-26 1.4E-30 216.2 30.1 238 200-472 70-319 (568)
94 KOG0308 Conserved WD40 repeat- 100.0 4E-27 8.7E-32 214.0 20.1 259 30-402 19-287 (735)
95 KOG2106 Uncharacterized conser 100.0 4.3E-25 9.3E-30 195.1 31.3 383 23-485 95-517 (626)
96 KOG0264 Nucleosome remodeling 100.0 1.5E-26 3.3E-31 202.1 21.9 267 28-401 120-405 (422)
97 KOG0264 Nucleosome remodeling 100.0 9E-27 2E-31 203.5 20.4 285 100-486 111-402 (422)
98 KOG0278 Serine/threonine kinas 100.0 1.8E-27 3.8E-32 191.8 14.6 244 28-404 55-301 (334)
99 KOG0301 Phospholipase A2-activ 100.0 7.6E-26 1.6E-30 207.2 26.7 273 28-446 10-285 (745)
100 KOG0300 WD40 repeat-containing 100.0 4.4E-26 9.6E-31 190.1 22.7 282 27-402 143-430 (481)
101 KOG1332 Vesicle coat complex C 100.0 1.1E-26 2.4E-31 186.6 17.9 248 200-486 7-284 (299)
102 KOG1332 Vesicle coat complex C 99.9 2.4E-26 5.1E-31 184.8 19.0 257 29-402 8-288 (299)
103 KOG2096 WD40 repeat protein [G 99.9 5.5E-25 1.2E-29 183.7 27.8 308 28-486 82-400 (420)
104 KOG0294 WD40 repeat-containing 99.9 3.3E-25 7.2E-30 184.7 26.2 275 46-449 3-281 (362)
105 KOG1408 WD40 repeat protein [F 99.9 1.1E-25 2.5E-30 206.6 25.4 381 31-485 77-575 (1080)
106 KOG1274 WD40 repeat protein [G 99.9 4.8E-25 1E-29 208.3 29.6 270 29-424 10-281 (933)
107 KOG1539 WD repeat protein [Gen 99.9 4.1E-25 8.9E-30 206.5 28.8 373 31-486 201-646 (910)
108 KOG4283 Transcription-coupled 99.9 3.6E-25 7.9E-30 182.8 24.7 314 30-448 41-364 (397)
109 KOG0274 Cdc4 and related F-box 99.9 1.5E-25 3.2E-30 213.1 25.8 240 27-405 244-487 (537)
110 KOG2106 Uncharacterized conser 99.9 4.3E-24 9.4E-29 188.8 32.5 353 32-486 246-624 (626)
111 KOG0639 Transducin-like enhanc 99.9 9.3E-26 2E-30 199.1 21.4 286 27-486 414-702 (705)
112 KOG1273 WD40 repeat protein [G 99.9 5.3E-25 1.2E-29 183.5 24.5 254 35-413 26-292 (405)
113 KOG1407 WD40 repeat protein [F 99.9 2.7E-25 5.8E-30 180.5 21.7 230 114-442 21-253 (313)
114 KOG1446 Histone H3 (Lys4) meth 99.9 6.3E-24 1.4E-28 177.7 30.5 211 114-414 15-230 (311)
115 KOG0650 WD40 repeat nucleolar 99.9 5.4E-25 1.2E-29 198.4 25.5 331 18-485 386-732 (733)
116 KOG0288 WD40 repeat protein Ti 99.9 1.9E-26 4.1E-31 198.7 15.4 271 114-485 176-458 (459)
117 KOG0973 Histone transcription 99.9 3.5E-25 7.6E-30 213.4 25.2 270 28-402 65-357 (942)
118 KOG2919 Guanine nucleotide-bin 99.9 5.8E-25 1.3E-29 183.9 23.1 290 34-424 51-351 (406)
119 KOG0289 mRNA splicing factor [ 99.9 9.2E-25 2E-29 189.6 24.6 245 29-399 258-505 (506)
120 KOG0299 U3 snoRNP-associated p 99.9 4.9E-25 1.1E-29 192.7 22.8 250 30-399 200-455 (479)
121 KOG0269 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 208.4 16.5 245 35-402 90-342 (839)
122 KOG0300 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 180.9 20.9 277 22-402 180-478 (481)
123 KOG0641 WD40 repeat protein [G 99.9 8.7E-23 1.9E-27 162.5 29.1 308 104-486 23-347 (350)
124 KOG4328 WD40 protein [Function 99.9 6.9E-24 1.5E-28 185.5 24.0 261 31-402 185-452 (498)
125 KOG2055 WD40 repeat protein [G 99.9 1.9E-23 4.1E-28 182.9 25.7 282 32-486 213-510 (514)
126 KOG1539 WD repeat protein [Gen 99.9 1.6E-23 3.5E-28 195.9 26.5 330 28-446 239-645 (910)
127 KOG0269 WD40 repeat-containing 99.9 4.4E-24 9.5E-29 198.1 22.2 286 32-443 39-333 (839)
128 KOG0308 Conserved WD40 repeat- 99.9 1.1E-24 2.3E-29 198.4 16.9 271 118-469 29-307 (735)
129 KOG0647 mRNA export protein (c 99.9 3.4E-23 7.3E-28 171.9 23.1 211 114-414 28-243 (347)
130 KOG2445 Nuclear pore complex c 99.9 8.8E-23 1.9E-27 169.8 25.2 271 29-401 10-319 (361)
131 KOG0302 Ribosome Assembly prot 99.9 2.7E-23 5.8E-28 177.4 22.1 223 114-402 152-380 (440)
132 KOG0321 WD40 repeat-containing 99.9 2.3E-23 5.1E-28 189.3 22.5 304 36-448 53-390 (720)
133 KOG4283 Transcription-coupled 99.9 1.6E-22 3.5E-27 167.2 23.8 305 114-486 44-363 (397)
134 KOG0302 Ribosome Assembly prot 99.9 1.2E-22 2.5E-27 173.6 22.1 228 27-343 146-379 (440)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.5E-21 1.2E-25 175.4 34.7 233 44-403 1-240 (300)
136 KOG2096 WD40 repeat protein [G 99.9 4.5E-22 9.7E-27 166.4 24.0 267 94-487 79-359 (420)
137 KOG2445 Nuclear pore complex c 99.9 1.1E-21 2.3E-26 163.5 25.7 277 114-487 14-317 (361)
138 KOG1036 Mitotic spindle checkp 99.9 6.2E-22 1.3E-26 165.1 23.8 243 28-390 50-294 (323)
139 KOG0267 Microtubule severing p 99.9 2.7E-24 5.9E-29 198.0 9.7 198 114-402 29-228 (825)
140 KOG1034 Transcriptional repres 99.9 5.8E-22 1.3E-26 166.4 22.4 285 30-404 36-341 (385)
141 KOG0267 Microtubule severing p 99.9 4.3E-24 9.3E-29 196.7 10.2 235 28-392 24-260 (825)
142 KOG1009 Chromatin assembly com 99.9 1.5E-21 3.2E-26 168.6 24.8 333 32-483 13-366 (434)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-20 2.7E-25 173.0 32.3 262 32-422 30-299 (300)
144 KOG0301 Phospholipase A2-activ 99.9 1.5E-21 3.3E-26 179.3 23.4 230 31-401 56-289 (745)
145 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 172.3 20.8 236 32-358 81-322 (476)
146 KOG0639 Transducin-like enhanc 99.9 3.2E-22 7E-27 177.0 17.4 255 13-399 444-703 (705)
147 KOG2048 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 166.8 34.0 205 32-343 69-276 (691)
148 KOG0321 WD40 repeat-containing 99.9 1.2E-21 2.7E-26 178.2 20.9 292 25-403 93-394 (720)
149 KOG0646 WD40 repeat protein [G 99.9 1E-21 2.2E-26 172.5 19.5 233 114-427 82-333 (476)
150 KOG1445 Tumor-specific antigen 99.9 2.9E-21 6.4E-26 175.6 23.0 108 373-486 630-748 (1012)
151 KOG1188 WD40 repeat protein [G 99.9 2.3E-21 4.9E-26 163.8 20.4 288 45-448 41-345 (376)
152 KOG0268 Sof1-like rRNA process 99.9 5.6E-22 1.2E-26 168.6 16.4 240 28-402 105-347 (433)
153 KOG4378 Nuclear protein COP1 [ 99.9 3.2E-21 6.9E-26 170.5 21.1 264 34-425 36-305 (673)
154 KOG2055 WD40 repeat protein [G 99.9 4E-21 8.7E-26 168.4 21.2 251 32-400 257-512 (514)
155 KOG0307 Vesicle coat complex C 99.9 5.2E-22 1.1E-26 192.6 15.6 250 113-446 64-324 (1049)
156 KOG4227 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 161.6 22.8 317 24-451 48-389 (609)
157 KOG1538 Uncharacterized conser 99.9 2.3E-20 5E-25 170.9 23.5 275 34-401 14-294 (1081)
158 KOG0290 Conserved WD40 repeat- 99.9 1.4E-19 3.1E-24 149.7 25.0 301 32-485 44-362 (364)
159 KOG0270 WD40 repeat-containing 99.9 1.4E-20 3E-25 164.4 18.8 266 35-404 176-453 (463)
160 KOG0270 WD40 repeat-containing 99.9 9.4E-20 2E-24 159.3 23.4 260 114-448 174-448 (463)
161 KOG1273 WD40 repeat protein [G 99.9 9.9E-20 2.2E-24 152.3 21.4 200 116-401 26-227 (405)
162 KOG1274 WD40 repeat protein [G 99.9 1.4E-19 3.1E-24 171.6 25.1 206 31-343 55-263 (933)
163 KOG0307 Vesicle coat complex C 99.9 4.5E-21 9.8E-26 186.2 15.3 263 24-403 56-330 (1049)
164 KOG0642 Cell-cycle nuclear pro 99.9 1.6E-20 3.6E-25 168.8 16.9 282 27-412 289-572 (577)
165 KOG1034 Transcriptional repres 99.9 1.7E-20 3.6E-25 157.8 15.2 267 30-400 87-383 (385)
166 KOG1963 WD40 repeat protein [G 99.9 1.6E-18 3.5E-23 164.1 30.3 381 37-487 21-537 (792)
167 KOG4378 Nuclear protein COP1 [ 99.9 2.8E-20 6.2E-25 164.5 16.8 222 34-382 81-305 (673)
168 KOG0303 Actin-binding protein 99.9 2E-19 4.3E-24 154.9 21.3 296 13-423 8-319 (472)
169 KOG1007 WD repeat protein TSSC 99.9 7.7E-19 1.7E-23 145.3 23.7 225 202-484 121-356 (370)
170 KOG1445 Tumor-specific antigen 99.9 9E-19 1.9E-23 159.7 26.3 133 256-414 630-764 (1012)
171 KOG1524 WD40 repeat-containing 99.8 1.9E-19 4.2E-24 160.8 20.8 271 45-486 76-346 (737)
172 KOG0650 WD40 repeat nucleolar 99.8 2.7E-19 5.8E-24 162.0 19.9 249 92-443 391-673 (733)
173 KOG0644 Uncharacterized conser 99.8 1.7E-20 3.8E-25 175.7 12.4 249 28-412 186-438 (1113)
174 KOG0649 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 134.8 25.6 260 34-400 12-274 (325)
175 KOG1007 WD repeat protein TSSC 99.8 1E-18 2.3E-23 144.5 19.9 271 29-400 60-361 (370)
176 KOG0303 Actin-binding protein 99.8 1.5E-18 3.3E-23 149.5 19.8 213 28-345 77-297 (472)
177 COG2319 FOG: WD40 repeat [Gene 99.8 3.1E-16 6.7E-21 151.5 38.5 324 28-486 61-398 (466)
178 KOG1538 Uncharacterized conser 99.8 1.3E-18 2.8E-23 159.6 20.0 264 114-481 13-285 (1081)
179 KOG0322 G-protein beta subunit 99.8 1.8E-18 3.9E-23 141.3 17.6 296 30-399 12-322 (323)
180 KOG1009 Chromatin assembly com 99.8 3.1E-18 6.7E-23 148.2 19.3 281 114-486 14-327 (434)
181 KOG4227 WD40 repeat protein [G 99.8 4.5E-18 9.9E-23 146.5 18.9 301 94-486 49-385 (609)
182 KOG4328 WD40 protein [Function 99.8 2.4E-18 5.2E-23 151.1 17.5 244 201-485 183-447 (498)
183 KOG2110 Uncharacterized conser 99.8 3.3E-16 7.2E-21 134.3 29.8 240 32-402 5-250 (391)
184 PRK11028 6-phosphogluconolacto 99.8 3E-16 6.4E-21 145.4 31.6 214 114-402 35-260 (330)
185 KOG1524 WD40 repeat-containing 99.8 9E-18 1.9E-22 150.3 18.9 206 217-485 76-282 (737)
186 KOG1587 Cytoplasmic dynein int 99.8 6E-17 1.3E-21 153.3 25.6 276 26-402 236-518 (555)
187 KOG1240 Protein kinase contain 99.8 1.6E-16 3.4E-21 155.6 27.9 295 7-404 1027-1338(1431)
188 KOG1587 Cytoplasmic dynein int 99.8 2.2E-16 4.8E-21 149.5 28.2 223 114-402 243-474 (555)
189 KOG1517 Guanine nucleotide bin 99.8 8.4E-17 1.8E-21 155.1 25.3 305 34-486 1066-1379(1387)
190 KOG2919 Guanine nucleotide-bin 99.8 2.6E-17 5.7E-22 138.4 19.1 294 116-484 52-365 (406)
191 PRK01742 tolB translocation pr 99.8 5.2E-17 1.1E-21 155.0 23.2 214 114-424 204-426 (429)
192 PRK11028 6-phosphogluconolacto 99.8 1.3E-15 2.7E-20 141.2 31.3 263 28-401 30-305 (330)
193 KOG1523 Actin-related protein 99.8 9.7E-17 2.1E-21 134.9 20.0 225 32-352 10-246 (361)
194 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-14 4.2E-19 138.9 38.8 315 34-486 111-440 (466)
195 KOG0290 Conserved WD40 repeat- 99.8 2E-16 4.2E-21 131.3 19.7 210 28-339 146-362 (364)
196 KOG1310 WD40 repeat protein [G 99.8 4.3E-17 9.2E-22 146.5 16.3 243 24-343 42-304 (758)
197 KOG1334 WD40 repeat protein [G 99.7 4.7E-17 1E-21 144.2 14.9 308 25-448 135-465 (559)
198 KOG1963 WD40 repeat protein [G 99.7 3.7E-15 8.1E-20 141.7 28.3 308 28-450 201-539 (792)
199 KOG0642 Cell-cycle nuclear pro 99.7 4.4E-17 9.5E-22 147.0 14.1 318 38-449 234-561 (577)
200 KOG4497 Uncharacterized conser 99.7 3.2E-15 7E-20 126.3 23.3 317 33-483 49-426 (447)
201 KOG1517 Guanine nucleotide bin 99.7 1.1E-15 2.5E-20 147.5 22.4 269 32-402 1109-1383(1387)
202 KOG0322 G-protein beta subunit 99.7 3.6E-16 7.9E-21 128.0 16.3 264 94-448 7-322 (323)
203 KOG1523 Actin-related protein 99.7 9.6E-16 2.1E-20 129.0 19.1 243 114-423 11-259 (361)
204 KOG4497 Uncharacterized conser 99.7 4.9E-16 1.1E-20 131.2 16.9 219 37-400 13-240 (447)
205 KOG0771 Prolactin regulatory e 99.7 2.2E-15 4.8E-20 131.6 21.4 176 208-424 148-335 (398)
206 KOG2139 WD40 repeat protein [G 99.7 1.2E-14 2.5E-19 124.6 25.0 265 34-401 100-384 (445)
207 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 145.2 21.4 218 28-381 199-426 (429)
208 KOG1188 WD40 repeat protein [G 99.7 9.7E-16 2.1E-20 130.1 17.2 264 31-401 69-347 (376)
209 PRK03629 tolB translocation pr 99.7 5.3E-14 1.1E-18 134.0 29.0 212 114-423 199-427 (429)
210 KOG0649 WD40 repeat protein [G 99.7 5.3E-14 1.1E-18 114.1 23.8 277 114-469 11-295 (325)
211 KOG1272 WD40-repeat-containing 99.7 3.9E-16 8.6E-21 137.6 12.2 263 115-481 131-401 (545)
212 KOG0771 Prolactin regulatory e 99.7 1.4E-15 3.1E-20 132.8 15.5 201 36-343 148-355 (398)
213 KOG2110 Uncharacterized conser 99.7 5.3E-13 1.1E-17 114.9 28.8 157 114-343 88-249 (391)
214 KOG1240 Protein kinase contain 99.7 9.2E-14 2E-18 136.6 27.1 242 87-412 1034-1284(1431)
215 KOG2321 WD40 repeat protein [G 99.7 2.5E-14 5.4E-19 129.7 21.3 166 201-402 172-345 (703)
216 KOG1310 WD40 repeat protein [G 99.7 4E-15 8.7E-20 134.0 15.7 246 95-407 44-310 (758)
217 PRK02889 tolB translocation pr 99.6 3.2E-13 6.9E-18 128.9 27.1 214 114-423 196-424 (427)
218 PRK05137 tolB translocation pr 99.6 4.8E-13 1E-17 128.4 27.9 211 114-423 202-432 (435)
219 KOG1334 WD40 repeat protein [G 99.6 7E-15 1.5E-19 130.6 13.8 305 91-486 132-464 (559)
220 PRK03629 tolB translocation pr 99.6 2.3E-13 5E-18 129.7 24.4 215 201-470 195-428 (429)
221 PF08662 eIF2A: Eukaryotic tra 99.6 9.3E-14 2E-18 116.5 19.0 148 208-400 9-179 (194)
222 KOG2111 Uncharacterized conser 99.6 5.2E-12 1.1E-16 106.8 29.1 229 34-343 7-257 (346)
223 KOG2139 WD40 repeat protein [G 99.6 1.4E-12 3.1E-17 112.0 25.9 265 32-400 140-431 (445)
224 PRK04922 tolB translocation pr 99.6 4.7E-13 1E-17 128.2 26.0 212 114-423 204-432 (433)
225 KOG2111 Uncharacterized conser 99.6 8.6E-12 1.9E-16 105.5 28.9 249 114-402 6-258 (346)
226 PRK02889 tolB translocation pr 99.6 5.7E-13 1.2E-17 127.2 23.0 209 29-356 192-415 (427)
227 PRK04922 tolB translocation pr 99.6 5.3E-13 1.1E-17 127.9 22.6 207 28-355 199-422 (433)
228 PF02239 Cytochrom_D1: Cytochr 99.6 1.4E-11 3E-16 113.9 30.5 321 45-487 6-346 (369)
229 KOG3881 Uncharacterized conser 99.6 6.6E-13 1.4E-17 115.1 19.5 260 31-404 54-324 (412)
230 COG2706 3-carboxymuconate cycl 99.6 5.6E-11 1.2E-15 102.9 31.2 291 12-402 19-323 (346)
231 KOG0644 Uncharacterized conser 99.6 3E-15 6.6E-20 141.1 5.5 278 92-486 181-466 (1113)
232 KOG2394 WD40 protein DMR-N9 [G 99.6 3E-13 6.6E-18 121.8 17.8 190 213-423 182-384 (636)
233 KOG2315 Predicted translation 99.6 2.6E-11 5.6E-16 110.3 29.8 278 32-402 34-346 (566)
234 PF02239 Cytochrom_D1: Cytochr 99.5 2.2E-12 4.8E-17 119.2 23.2 291 36-409 40-355 (369)
235 PF10282 Lactonase: Lactonase, 99.5 4.8E-10 1E-14 104.0 37.9 221 114-400 37-275 (345)
236 KOG3881 Uncharacterized conser 99.5 2E-12 4.4E-17 112.2 19.9 256 114-486 56-318 (412)
237 KOG2394 WD40 protein DMR-N9 [G 99.5 5E-13 1.1E-17 120.5 16.8 163 114-323 220-384 (636)
238 PF08662 eIF2A: Eukaryotic tra 99.5 1.7E-12 3.7E-17 108.9 19.2 117 203-352 58-187 (194)
239 PRK05137 tolB translocation pr 99.5 3.4E-12 7.4E-17 122.5 23.5 197 28-343 197-413 (435)
240 PF10282 Lactonase: Lactonase, 99.5 5.1E-10 1.1E-14 103.8 36.5 269 32-400 36-322 (345)
241 COG2706 3-carboxymuconate cycl 99.5 4E-10 8.6E-15 97.8 32.6 221 114-402 40-276 (346)
242 KOG1272 WD40-repeat-containing 99.5 1.3E-13 2.9E-18 121.9 10.2 253 34-424 131-390 (545)
243 TIGR02800 propeller_TolB tol-p 99.5 3.9E-11 8.5E-16 115.3 27.6 190 114-399 190-396 (417)
244 PRK00178 tolB translocation pr 99.5 6.3E-11 1.4E-15 114.0 28.6 212 114-423 199-427 (430)
245 KOG2321 WD40 repeat protein [G 99.5 3.7E-11 8.1E-16 109.5 24.3 288 106-481 44-335 (703)
246 KOG2041 WD40 repeat protein [G 99.5 7.9E-12 1.7E-16 116.6 20.5 257 31-392 13-280 (1189)
247 PRK04792 tolB translocation pr 99.5 4.8E-11 1E-15 114.3 26.9 212 114-423 218-446 (448)
248 KOG1354 Serine/threonine prote 99.5 2.4E-12 5.1E-17 109.9 14.8 293 114-486 26-357 (433)
249 TIGR02800 propeller_TolB tol-p 99.4 7.1E-11 1.5E-15 113.5 23.4 187 201-442 186-386 (417)
250 PRK00178 tolB translocation pr 99.4 1E-10 2.3E-15 112.5 23.8 206 28-354 194-416 (430)
251 KOG0974 WD-repeat protein WDR6 99.4 3.4E-11 7.5E-16 117.2 19.8 149 211-402 140-290 (967)
252 PRK04792 tolB translocation pr 99.4 9.9E-11 2.1E-15 112.2 22.9 206 29-355 214-436 (448)
253 COG5354 Uncharacterized protei 99.4 1.4E-09 3E-14 98.2 27.4 339 32-479 32-419 (561)
254 KOG2314 Translation initiation 99.4 2.2E-09 4.7E-14 97.9 28.4 312 35-485 213-570 (698)
255 PRK01029 tolB translocation pr 99.4 6E-10 1.3E-14 106.0 25.9 115 206-347 282-407 (428)
256 PF04762 IKI3: IKI3 family; I 99.3 5E-09 1.1E-13 107.8 33.2 355 32-486 75-454 (928)
257 KOG0280 Uncharacterized conser 99.3 9.3E-10 2E-14 92.4 22.6 159 207-403 124-287 (339)
258 KOG4547 WD40 repeat-containing 99.3 5.3E-10 1.1E-14 102.7 22.9 194 41-343 2-221 (541)
259 PRK01029 tolB translocation pr 99.3 1.8E-09 4E-14 102.7 27.6 177 204-423 230-424 (428)
260 KOG1064 RAVE (regulator of V-A 99.3 2E-11 4.3E-16 124.8 13.3 219 9-353 2185-2408(2439)
261 KOG2315 Predicted translation 99.3 1.1E-09 2.3E-14 100.1 22.1 233 36-401 129-391 (566)
262 KOG2314 Translation initiation 99.3 6.8E-09 1.5E-13 94.7 25.8 289 28-400 246-573 (698)
263 KOG1409 Uncharacterized conser 99.3 9.1E-10 2E-14 94.4 18.4 203 32-287 68-273 (404)
264 KOG4547 WD40 repeat-containing 99.2 1.3E-09 2.8E-14 100.2 20.2 208 125-401 3-221 (541)
265 KOG0974 WD-repeat protein WDR6 99.2 5.8E-10 1.3E-14 108.9 18.8 150 38-286 139-290 (967)
266 COG5170 CDC55 Serine/threonine 99.2 2E-10 4.3E-15 97.1 12.9 251 114-414 27-323 (460)
267 KOG4532 WD40-like repeat conta 99.2 4.5E-09 9.8E-14 87.2 20.4 250 37-402 72-333 (344)
268 KOG0280 Uncharacterized conser 99.2 3E-09 6.4E-14 89.4 18.9 202 116-402 124-335 (339)
269 KOG2041 WD40 repeat protein [G 99.2 3.5E-10 7.7E-15 105.9 14.4 237 202-479 12-278 (1189)
270 TIGR02658 TTQ_MADH_Hv methylam 99.2 5.7E-08 1.2E-12 88.0 27.4 252 40-351 53-338 (352)
271 COG4946 Uncharacterized protei 99.2 3.2E-07 7E-12 82.5 29.8 172 40-330 327-505 (668)
272 KOG0309 Conserved WD40 repeat- 99.2 4.1E-10 9E-15 105.8 12.4 300 31-456 23-346 (1081)
273 PF04762 IKI3: IKI3 family; I 99.2 3.4E-07 7.4E-12 94.5 34.7 218 114-402 210-458 (928)
274 KOG1409 Uncharacterized conser 99.1 2.6E-09 5.6E-14 91.7 15.8 248 92-446 15-267 (404)
275 KOG3914 WD repeat protein WDR4 99.1 1.3E-09 2.7E-14 95.7 14.1 80 201-289 148-228 (390)
276 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.8E-12 99.5 31.7 186 208-404 686-892 (1057)
277 COG5354 Uncharacterized protei 99.1 4.5E-08 9.7E-13 88.7 23.9 282 29-402 69-397 (561)
278 COG4946 Uncharacterized protei 99.1 8.4E-08 1.8E-12 86.2 25.0 149 27-274 354-508 (668)
279 TIGR02658 TTQ_MADH_Hv methylam 99.1 7.2E-07 1.6E-11 81.0 29.9 234 212-486 53-328 (352)
280 KOG0309 Conserved WD40 repeat- 99.1 1.7E-09 3.7E-14 101.8 12.1 297 105-486 16-337 (1081)
281 PRK04043 tolB translocation pr 99.1 1E-07 2.2E-12 90.2 24.4 197 33-352 188-408 (419)
282 TIGR03300 assembly_YfgL outer 99.0 2.5E-07 5.5E-12 87.5 26.5 303 44-485 65-376 (377)
283 PLN02919 haloacid dehalogenase 99.0 1.4E-06 3E-11 91.9 33.0 189 205-402 624-835 (1057)
284 PRK04043 tolB translocation pr 99.0 5.7E-07 1.2E-11 85.2 24.9 150 203-401 231-401 (419)
285 KOG4714 Nucleoporin [Nuclear s 98.9 4.2E-08 9.1E-13 81.2 14.4 150 212-401 97-255 (319)
286 KOG1064 RAVE (regulator of V-A 98.9 1.1E-08 2.3E-13 105.6 11.8 187 114-402 2209-2400(2439)
287 PF15492 Nbas_N: Neuroblastoma 98.9 4.2E-06 9.1E-11 71.0 25.2 181 204-402 43-261 (282)
288 PF15492 Nbas_N: Neuroblastoma 98.9 2.5E-06 5.4E-11 72.4 23.1 192 116-355 46-271 (282)
289 KOG1912 WD40 repeat protein [G 98.9 5.9E-07 1.3E-11 85.7 21.2 256 34-401 17-305 (1062)
290 KOG4190 Uncharacterized conser 98.8 2.7E-08 5.9E-13 90.9 10.7 251 28-398 731-986 (1034)
291 KOG4190 Uncharacterized conser 98.8 7.9E-09 1.7E-13 94.3 7.1 220 94-402 728-950 (1034)
292 KOG0882 Cyclophilin-related pe 98.8 2.2E-07 4.7E-12 83.0 15.3 328 28-397 5-369 (558)
293 PF08450 SGL: SMP-30/Gluconola 98.8 2.8E-05 6.1E-10 68.7 29.0 226 37-388 4-243 (246)
294 KOG4532 WD40-like repeat conta 98.8 1.4E-06 3E-11 72.8 18.6 168 116-342 161-331 (344)
295 KOG3914 WD repeat protein WDR4 98.8 1.6E-07 3.5E-12 82.7 13.5 158 207-405 65-228 (390)
296 PF07433 DUF1513: Protein of u 98.8 1.3E-05 2.9E-10 70.2 24.2 239 35-391 7-277 (305)
297 PF08450 SGL: SMP-30/Gluconola 98.8 4.7E-05 1E-09 67.3 28.7 214 118-422 4-233 (246)
298 KOG4714 Nucleoporin [Nuclear s 98.7 1.8E-07 3.8E-12 77.6 11.8 74 205-285 180-255 (319)
299 KOG1832 HIV-1 Vpr-binding prot 98.7 1.2E-08 2.7E-13 98.1 5.9 215 31-387 1100-1318(1516)
300 KOG1912 WD40 repeat protein [G 98.7 2.8E-06 6.2E-11 81.2 21.0 372 31-470 54-575 (1062)
301 KOG2695 WD40 repeat protein [G 98.7 6.1E-08 1.3E-12 83.5 8.8 132 203-356 251-389 (425)
302 TIGR03300 assembly_YfgL outer 98.7 8.8E-06 1.9E-10 77.1 24.3 153 217-414 191-351 (377)
303 PF13360 PQQ_2: PQQ-like domai 98.7 8.5E-06 1.8E-10 71.7 22.4 198 126-404 35-234 (238)
304 PF00930 DPPIV_N: Dipeptidyl p 98.6 3E-05 6.5E-10 72.4 24.6 286 114-478 43-346 (353)
305 KOG1832 HIV-1 Vpr-binding prot 98.6 5.4E-08 1.2E-12 93.9 5.3 201 91-403 1091-1294(1516)
306 KOG2066 Vacuolar assembly/sort 98.6 3.1E-06 6.7E-11 81.4 16.3 193 28-342 35-233 (846)
307 PF00400 WD40: WD domain, G-be 98.5 2.2E-07 4.8E-12 55.3 5.1 32 29-60 8-39 (39)
308 KOG0882 Cyclophilin-related pe 98.5 4.6E-06 1E-10 74.8 15.1 218 112-404 8-235 (558)
309 KOG2695 WD40 repeat protein [G 98.5 7.7E-07 1.7E-11 77.0 9.5 156 216-410 225-385 (425)
310 PF00400 WD40: WD domain, G-be 98.5 6.9E-07 1.5E-11 53.1 6.2 38 92-143 2-39 (39)
311 KOG2114 Vacuolar assembly/sort 98.5 8E-05 1.7E-09 72.6 23.0 214 34-355 27-256 (933)
312 KOG2066 Vacuolar assembly/sort 98.5 7.7E-06 1.7E-10 78.8 15.6 163 204-423 39-209 (846)
313 KOG1008 Uncharacterized conser 98.4 7.8E-08 1.7E-12 89.7 2.3 208 114-401 57-276 (783)
314 KOG3617 WD40 and TPR repeat-co 98.4 1.8E-05 3.8E-10 76.8 17.6 108 36-233 19-131 (1416)
315 PF07433 DUF1513: Protein of u 98.4 8.9E-05 1.9E-09 65.1 20.4 116 201-340 159-283 (305)
316 KOG1920 IkappaB kinase complex 98.4 0.00023 5E-09 72.2 25.4 236 33-343 69-323 (1265)
317 KOG1920 IkappaB kinase complex 98.4 0.00032 6.9E-09 71.3 25.8 226 114-425 69-346 (1265)
318 PF11768 DUF3312: Protein of u 98.4 0.00016 3.5E-09 67.9 22.5 76 201-287 256-332 (545)
319 PRK11138 outer membrane biogen 98.4 0.00052 1.1E-08 65.3 26.4 151 217-404 161-316 (394)
320 KOG3621 WD40 repeat-containing 98.3 0.00031 6.7E-09 67.2 23.1 123 31-234 32-155 (726)
321 KOG3621 WD40 repeat-containing 98.3 6.9E-05 1.5E-09 71.5 18.7 120 115-285 35-155 (726)
322 KOG1645 RING-finger-containing 98.3 9E-05 2E-09 65.9 16.7 249 29-342 190-461 (463)
323 KOG1275 PAB-dependent poly(A) 98.2 4.2E-05 9.1E-10 74.9 14.4 152 115-341 179-341 (1118)
324 PF06977 SdiA-regulated: SdiA- 98.2 0.00089 1.9E-08 58.1 21.3 219 33-339 22-247 (248)
325 KOG2114 Vacuolar assembly/sort 98.2 0.00052 1.1E-08 67.2 21.4 211 124-414 32-257 (933)
326 COG0823 TolB Periplasmic compo 98.2 0.00055 1.2E-08 64.7 20.7 183 114-391 193-390 (425)
327 PF11768 DUF3312: Protein of u 98.1 5E-05 1.1E-09 71.2 13.3 77 313-407 259-336 (545)
328 PF06977 SdiA-regulated: SdiA- 98.1 0.00051 1.1E-08 59.5 18.5 222 200-486 17-248 (248)
329 KOG1645 RING-finger-containing 98.1 0.00038 8.3E-09 62.0 17.6 75 114-237 194-270 (463)
330 PRK11138 outer membrane biogen 98.1 0.0016 3.4E-08 62.1 23.6 100 267-404 257-357 (394)
331 KOG1275 PAB-dependent poly(A) 98.1 9E-05 2E-09 72.7 14.5 150 207-400 180-342 (1118)
332 PF08553 VID27: VID27 cytoplas 98.1 0.00034 7.5E-09 70.0 18.5 190 217-429 543-756 (794)
333 PF04841 Vps16_N: Vps16, N-ter 98.1 0.011 2.4E-07 56.2 29.3 40 314-354 217-257 (410)
334 COG0823 TolB Periplasmic compo 98.1 0.00044 9.5E-09 65.4 18.2 185 32-332 192-388 (425)
335 KOG1008 Uncharacterized conser 98.1 4.5E-06 9.8E-11 78.3 4.8 211 31-343 55-276 (783)
336 PF08596 Lgl_C: Lethal giant l 98.0 0.0059 1.3E-07 57.3 23.9 252 115-404 3-294 (395)
337 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.013 2.8E-07 54.9 25.2 77 310-404 304-402 (415)
338 PF08596 Lgl_C: Lethal giant l 98.0 0.018 3.8E-07 54.1 27.2 279 34-400 3-335 (395)
339 PF06433 Me-amine-dh_H: Methyl 97.9 0.008 1.7E-07 53.9 22.4 163 216-404 148-324 (342)
340 PF04053 Coatomer_WDAD: Coatom 97.9 0.0048 1E-07 58.7 22.1 218 202-485 30-259 (443)
341 PRK02888 nitrous-oxide reducta 97.9 0.012 2.5E-07 57.3 24.1 72 314-401 321-405 (635)
342 PF08553 VID27: VID27 cytoplas 97.9 0.0035 7.6E-08 63.1 21.3 143 267-486 494-645 (794)
343 PF14583 Pectate_lyase22: Olig 97.9 0.018 3.9E-07 52.7 23.6 168 203-400 186-381 (386)
344 PF13360 PQQ_2: PQQ-like domai 97.8 0.0052 1.1E-07 53.9 20.3 194 43-348 35-235 (238)
345 PRK02888 nitrous-oxide reducta 97.8 0.011 2.3E-07 57.6 22.9 30 374-403 324-354 (635)
346 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0083 1.8E-07 56.1 21.7 234 204-478 42-300 (353)
347 PF14583 Pectate_lyase22: Olig 97.7 0.012 2.7E-07 53.7 20.5 107 253-391 187-303 (386)
348 PF04053 Coatomer_WDAD: Coatom 97.7 0.016 3.5E-07 55.2 22.3 229 34-401 34-263 (443)
349 PF06433 Me-amine-dh_H: Methyl 97.7 0.042 9E-07 49.4 23.6 163 209-403 40-216 (342)
350 COG3490 Uncharacterized protei 97.6 0.021 4.5E-07 49.2 18.4 106 204-332 67-180 (366)
351 PF00780 CNH: CNH domain; Int 97.6 0.054 1.2E-06 48.7 24.5 231 215-487 6-254 (275)
352 KOG2395 Protein involved in va 97.5 0.002 4.3E-08 59.9 12.9 140 268-484 348-496 (644)
353 KOG3617 WD40 and TPR repeat-co 97.5 0.0041 8.8E-08 61.2 15.0 71 34-145 61-131 (1416)
354 COG3490 Uncharacterized protei 97.5 0.0053 1.1E-07 52.7 13.4 87 202-289 223-315 (366)
355 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.014 3E-07 42.9 13.5 103 116-280 2-110 (111)
356 KOG4640 Anaphase-promoting com 97.4 0.0011 2.3E-08 62.9 9.1 95 203-323 19-115 (665)
357 PF03178 CPSF_A: CPSF A subuni 97.4 0.08 1.7E-06 48.9 21.5 115 202-342 86-202 (321)
358 PF04841 Vps16_N: Vps16, N-ter 97.3 0.17 3.8E-06 48.2 27.7 29 205-233 81-109 (410)
359 smart00320 WD40 WD40 repeats. 97.3 0.00045 9.8E-09 40.1 4.0 31 30-60 10-40 (40)
360 PF05694 SBP56: 56kDa selenium 97.3 0.14 2.9E-06 47.7 20.8 118 224-350 221-350 (461)
361 COG3204 Uncharacterized protei 97.2 0.12 2.6E-06 45.0 20.7 176 201-400 82-263 (316)
362 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.026 5.6E-07 41.5 13.0 101 256-395 2-109 (111)
363 KOG4640 Anaphase-promoting com 97.2 0.002 4.3E-08 61.2 8.7 93 314-422 21-114 (665)
364 cd00216 PQQ_DH Dehydrogenases 97.1 0.37 7.9E-06 47.4 28.1 25 381-405 405-429 (488)
365 smart00320 WD40 WD40 repeats. 97.0 0.0021 4.6E-08 37.1 5.2 36 94-143 5-40 (40)
366 PF03178 CPSF_A: CPSF A subuni 97.0 0.14 2.9E-06 47.3 19.3 137 225-401 62-203 (321)
367 PF02897 Peptidase_S9_N: Proly 97.0 0.37 8E-06 46.4 28.9 159 207-405 229-409 (414)
368 COG3391 Uncharacterized conser 96.9 0.38 8.3E-06 45.5 23.0 156 206-402 117-285 (381)
369 KOG1897 Damage-specific DNA bi 96.9 0.68 1.5E-05 47.3 31.1 102 369-478 773-887 (1096)
370 PRK13616 lipoprotein LpqB; Pro 96.8 0.19 4.2E-06 50.0 19.5 75 204-284 447-525 (591)
371 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0061 1.3E-07 37.2 5.4 31 32-62 11-41 (47)
372 KOG2395 Protein involved in va 96.8 0.04 8.6E-07 51.7 13.0 114 207-342 378-500 (644)
373 PF00780 CNH: CNH domain; Int 96.6 0.48 1E-05 42.5 28.3 159 215-411 104-265 (275)
374 COG3204 Uncharacterized protei 96.5 0.49 1.1E-05 41.5 20.7 184 114-356 86-275 (316)
375 PRK13616 lipoprotein LpqB; Pro 96.5 0.65 1.4E-05 46.4 20.7 125 207-346 399-529 (591)
376 COG3391 Uncharacterized conser 96.5 0.8 1.7E-05 43.3 24.5 209 35-355 76-295 (381)
377 PF14870 PSII_BNR: Photosynthe 96.5 0.61 1.3E-05 42.1 18.4 119 201-339 183-301 (302)
378 PF12894 Apc4_WD40: Anaphase-p 96.4 0.014 3E-07 35.7 5.3 32 113-146 11-42 (47)
379 KOG2079 Vacuolar assembly/sort 96.3 0.029 6.4E-07 57.0 9.7 103 267-400 100-203 (1206)
380 KOG4649 PQQ (pyrrolo-quinoline 96.2 0.72 1.6E-05 39.5 25.8 106 44-239 23-129 (354)
381 COG3386 Gluconolactonase [Carb 96.1 1.1 2.3E-05 40.7 23.5 94 314-423 163-264 (307)
382 KOG1897 Damage-specific DNA bi 95.9 2.4 5.3E-05 43.6 31.0 135 255-422 776-922 (1096)
383 PF15390 DUF4613: Domain of un 95.9 1.9 4.1E-05 41.8 23.1 71 209-287 117-189 (671)
384 KOG4649 PQQ (pyrrolo-quinoline 95.8 1.1 2.3E-05 38.5 23.9 68 43-151 62-129 (354)
385 PF15390 DUF4613: Domain of un 95.7 0.36 7.8E-06 46.4 13.6 124 202-342 54-186 (671)
386 COG3386 Gluconolactonase [Carb 95.6 1.7 3.7E-05 39.5 25.4 129 205-355 111-254 (307)
387 TIGR03606 non_repeat_PQQ dehyd 95.6 1.6 3.4E-05 41.9 17.7 61 203-264 28-89 (454)
388 PF10647 Gmad1: Lipoprotein Lp 95.4 0.5 1.1E-05 41.7 13.2 139 315-479 25-185 (253)
389 PF12234 Rav1p_C: RAVE protein 95.4 0.25 5.4E-06 48.9 12.1 31 114-144 73-103 (631)
390 KOG2079 Vacuolar assembly/sort 95.3 0.17 3.6E-06 51.9 10.4 75 202-284 128-203 (1206)
391 TIGR02604 Piru_Ver_Nterm putat 95.2 1.3 2.8E-05 41.8 15.9 111 204-330 13-140 (367)
392 PF02897 Peptidase_S9_N: Proly 95.1 3.3 7.2E-05 39.8 24.3 114 207-343 126-261 (414)
393 KOG3630 Nuclear pore complex, 95.1 0.56 1.2E-05 48.7 13.5 154 204-387 100-260 (1405)
394 PF07995 GSDH: Glucose / Sorbo 95.1 2.8 6E-05 38.8 22.6 26 34-60 3-28 (331)
395 PF10168 Nup88: Nuclear pore c 95.1 4.7 0.0001 41.4 24.2 84 204-287 84-182 (717)
396 PF08728 CRT10: CRT10; InterP 95.1 3.1 6.7E-05 42.0 18.3 76 203-283 162-245 (717)
397 PF10647 Gmad1: Lipoprotein Lp 95.0 2.4 5.2E-05 37.4 21.1 70 206-276 113-187 (253)
398 PF10168 Nup88: Nuclear pore c 94.9 0.96 2.1E-05 46.2 14.8 97 314-410 85-189 (717)
399 PF07995 GSDH: Glucose / Sorbo 94.9 3.2 6.9E-05 38.4 25.6 30 115-148 3-32 (331)
400 PF10313 DUF2415: Uncharacteri 94.9 0.17 3.6E-06 30.0 5.5 29 315-343 2-34 (43)
401 PF12234 Rav1p_C: RAVE protein 94.8 1.3 2.8E-05 44.1 15.0 116 207-342 32-156 (631)
402 cd00216 PQQ_DH Dehydrogenases 94.8 4.6 9.9E-05 39.8 32.9 26 128-153 111-136 (488)
403 PF10313 DUF2415: Uncharacteri 94.8 0.13 2.8E-06 30.4 5.0 33 254-286 1-35 (43)
404 PF05096 Glu_cyclase_2: Glutam 94.7 2.8 6E-05 36.7 20.5 157 205-402 45-205 (264)
405 KOG1916 Nuclear protein, conta 94.4 0.027 5.8E-07 56.2 2.5 128 207-348 183-328 (1283)
406 KOG2444 WD40 repeat protein [G 94.1 0.25 5.5E-06 41.4 7.2 19 127-145 70-88 (238)
407 KOG2280 Vacuolar assembly/sort 94.1 7.3 0.00016 39.1 18.0 42 314-356 217-259 (829)
408 KOG3630 Nuclear pore complex, 93.9 0.96 2.1E-05 47.1 12.1 104 204-330 155-260 (1405)
409 PF13449 Phytase-like: Esteras 93.9 5.3 0.00012 36.9 23.0 119 204-330 19-163 (326)
410 PF08728 CRT10: CRT10; InterP 93.8 5 0.00011 40.6 16.7 122 205-341 101-245 (717)
411 PRK13684 Ycf48-like protein; P 93.8 5.6 0.00012 36.9 17.6 119 202-341 212-330 (334)
412 KOG4499 Ca2+-binding protein R 93.5 4.3 9.3E-05 34.5 18.7 143 204-380 108-263 (310)
413 PF05694 SBP56: 56kDa selenium 93.4 3.2 7E-05 39.0 13.6 36 204-239 311-348 (461)
414 TIGR02604 Piru_Ver_Nterm putat 93.3 6.5 0.00014 37.1 16.3 17 34-50 15-31 (367)
415 PF07569 Hira: TUP1-like enhan 93.3 0.73 1.6E-05 39.6 9.0 79 261-343 18-96 (219)
416 COG5167 VID27 Protein involved 93.3 2.7 5.7E-05 40.0 12.8 140 267-484 480-628 (776)
417 KOG1916 Nuclear protein, conta 93.2 0.22 4.8E-06 50.1 6.3 123 114-287 181-326 (1283)
418 COG5167 VID27 Protein involved 93.1 8.4 0.00018 36.8 16.4 101 220-342 531-632 (776)
419 KOG4659 Uncharacterized conser 92.9 16 0.00034 39.4 24.9 74 317-391 596-682 (1899)
420 KOG2444 WD40 repeat protein [G 92.8 0.5 1.1E-05 39.7 6.9 65 216-288 70-136 (238)
421 PHA02713 hypothetical protein; 92.7 6.1 0.00013 39.6 15.8 24 381-404 512-537 (557)
422 PF07569 Hira: TUP1-like enhan 92.6 0.97 2.1E-05 38.8 8.8 83 114-233 13-95 (219)
423 KOG2280 Vacuolar assembly/sort 92.4 13 0.00029 37.4 18.1 29 374-402 220-248 (829)
424 PF14761 HPS3_N: Hermansky-Pud 92.2 6.3 0.00014 33.2 16.5 49 267-331 29-77 (215)
425 TIGR03606 non_repeat_PQQ dehyd 92.2 11 0.00025 36.2 16.4 33 32-64 29-61 (454)
426 PF14870 PSII_BNR: Photosynthe 91.2 11 0.00025 34.1 29.6 145 210-391 109-253 (302)
427 KOG4460 Nuclear pore complex, 90.9 5 0.00011 38.3 11.8 126 334-486 61-196 (741)
428 PLN00033 photosystem II stabil 90.3 17 0.00036 34.6 18.1 114 202-339 278-396 (398)
429 PF13449 Phytase-like: Esteras 90.2 15 0.00033 33.9 17.9 114 206-330 86-231 (326)
430 PHA02713 hypothetical protein; 90.2 6 0.00013 39.7 12.8 65 215-287 463-536 (557)
431 COG4590 ABC-type uncharacteriz 90.2 3.2 6.9E-05 38.8 9.8 167 201-403 217-389 (733)
432 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.8 23 0.00049 35.3 27.7 27 263-289 310-338 (527)
433 KOG2377 Uncharacterized conser 89.3 12 0.00027 35.2 12.8 131 207-357 25-155 (657)
434 PRK13684 Ycf48-like protein; P 88.7 20 0.00044 33.2 29.4 158 204-398 172-329 (334)
435 KOG4460 Nuclear pore complex, 88.6 11 0.00024 36.2 12.1 83 255-343 105-199 (741)
436 PF14781 BBS2_N: Ciliary BBSom 88.3 10 0.00022 29.3 13.3 117 36-233 2-125 (136)
437 PF02333 Phytase: Phytase; In 88.3 22 0.00048 33.3 22.8 151 225-402 127-292 (381)
438 KOG4441 Proteins containing BT 88.2 31 0.00066 34.8 18.5 152 209-404 327-503 (571)
439 COG4257 Vgb Streptogramin lyas 88.1 18 0.00038 31.8 18.0 195 124-412 70-274 (353)
440 PF12657 TFIIIC_delta: Transcr 88.0 4.2 9.2E-05 33.4 8.5 31 255-285 87-122 (173)
441 KOG1900 Nuclear pore complex, 87.8 34 0.00074 37.1 16.2 175 208-402 82-274 (1311)
442 PF03022 MRJP: Major royal jel 87.7 21 0.00046 32.2 19.1 173 207-401 3-216 (287)
443 KOG1900 Nuclear pore complex, 87.6 6.1 0.00013 42.3 10.8 80 203-285 177-273 (1311)
444 PF12657 TFIIIC_delta: Transcr 87.3 6.1 0.00013 32.5 9.1 31 372-402 87-123 (173)
445 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.1 34 0.00074 34.1 24.1 63 335-404 272-337 (527)
446 KOG2377 Uncharacterized conser 87.1 28 0.0006 33.0 19.8 120 114-287 67-188 (657)
447 PF14781 BBS2_N: Ciliary BBSom 86.8 13 0.00027 28.8 11.5 70 259-343 4-82 (136)
448 TIGR02276 beta_rpt_yvtn 40-res 86.7 4.4 9.5E-05 23.6 6.0 34 323-357 1-36 (42)
449 KOG4441 Proteins containing BT 86.7 38 0.00082 34.2 19.9 33 116-151 325-363 (571)
450 KOG2247 WD40 repeat-containing 85.9 0.11 2.3E-06 48.5 -2.1 131 256-423 37-169 (615)
451 TIGR03074 PQQ_membr_DH membran 85.8 49 0.0011 34.6 24.6 22 384-405 461-482 (764)
452 KOG4499 Ca2+-binding protein R 85.4 22 0.00049 30.4 16.3 99 205-322 158-262 (310)
453 COG4590 ABC-type uncharacteriz 85.3 5.4 0.00012 37.4 8.2 106 215-343 279-387 (733)
454 PF11635 Med16: Mediator compl 85.3 53 0.0011 34.5 20.9 82 313-395 259-345 (753)
455 PF07676 PD40: WD40-like Beta 84.6 3.7 8.1E-05 23.6 4.8 28 32-59 8-38 (39)
456 PF14727 PHTB1_N: PTHB1 N-term 84.0 41 0.00088 32.2 27.5 59 266-342 145-204 (418)
457 PF07676 PD40: WD40-like Beta 83.5 4.3 9.3E-05 23.4 4.7 19 460-478 9-27 (39)
458 PF14655 RAB3GAP2_N: Rab3 GTPa 82.5 14 0.00031 35.1 10.1 40 254-298 308-347 (415)
459 PF14761 HPS3_N: Hermansky-Pud 82.3 30 0.00064 29.3 12.7 128 317-486 21-161 (215)
460 COG3823 Glutamine cyclotransfe 81.3 32 0.00068 29.0 11.4 94 125-233 54-158 (262)
461 COG5290 IkappaB kinase complex 80.7 73 0.0016 32.8 14.8 71 257-343 250-325 (1243)
462 PF05096 Glu_cyclase_2: Glutam 80.6 40 0.00086 29.8 21.1 198 114-389 45-249 (264)
463 KOG2247 WD40 repeat-containing 80.5 0.31 6.7E-06 45.6 -1.4 131 124-330 43-176 (615)
464 PRK10115 protease 2; Provision 79.1 85 0.0018 32.6 29.3 32 34-65 128-164 (686)
465 KOG1983 Tomosyn and related SN 75.6 69 0.0015 34.8 13.6 26 379-404 243-268 (993)
466 PF11715 Nup160: Nucleoporin N 74.8 18 0.0004 36.3 9.0 75 214-289 156-253 (547)
467 TIGR03118 PEPCTERM_chp_1 conse 74.0 68 0.0015 28.9 24.6 28 35-62 25-52 (336)
468 PF01436 NHL: NHL repeat; Int 72.7 11 0.00024 19.8 3.9 24 374-397 5-28 (28)
469 PF03088 Str_synth: Strictosid 71.6 18 0.0004 25.7 5.8 43 273-333 34-76 (89)
470 TIGR03118 PEPCTERM_chp_1 conse 71.3 79 0.0017 28.5 22.8 57 334-405 222-284 (336)
471 PF11715 Nup160: Nucleoporin N 71.2 23 0.00051 35.5 8.8 28 126-153 229-256 (547)
472 PF10214 Rrn6: RNA polymerase 71.1 1.4E+02 0.0031 31.5 22.6 132 114-285 146-277 (765)
473 PF01731 Arylesterase: Arylest 69.0 23 0.00049 25.1 5.8 28 374-401 57-85 (86)
474 PHA03098 kelch-like protein; P 68.8 1.3E+02 0.0028 30.1 16.6 22 381-402 487-513 (534)
475 PF07250 Glyoxal_oxid_N: Glyox 68.2 82 0.0018 27.6 10.2 122 259-402 72-199 (243)
476 PHA03098 kelch-like protein; P 67.7 1.4E+02 0.003 29.9 17.1 28 126-153 342-374 (534)
477 PF12341 DUF3639: Protein of u 67.2 16 0.00035 19.2 3.5 25 34-60 3-27 (27)
478 KOG1983 Tomosyn and related SN 66.0 1.3E+02 0.0029 32.7 13.2 31 33-63 36-66 (993)
479 PF10214 Rrn6: RNA polymerase 65.0 1.9E+02 0.0042 30.6 23.9 182 202-401 77-277 (765)
480 COG5290 IkappaB kinase complex 63.7 1.9E+02 0.0041 30.0 15.0 30 32-61 112-141 (1243)
481 smart00564 PQQ beta-propeller 63.5 14 0.00031 20.0 3.3 21 384-404 8-28 (33)
482 KOG4659 Uncharacterized conser 62.8 2.5E+02 0.0054 31.2 20.6 22 459-480 661-682 (1899)
483 PF14269 Arylsulfotran_2: Aryl 58.4 48 0.001 30.2 7.4 74 316-400 146-220 (299)
484 PF01731 Arylesterase: Arylest 58.1 53 0.0011 23.3 6.0 28 315-342 55-84 (86)
485 PF08801 Nucleoporin_N: Nup133 55.7 2E+02 0.0043 27.8 15.8 30 373-402 192-221 (422)
486 PHA02790 Kelch-like protein; P 54.9 2.2E+02 0.0048 28.1 14.8 146 43-287 318-473 (480)
487 KOG3522 Predicted guanine nucl 54.7 74 0.0016 32.9 8.4 74 252-343 625-698 (925)
488 PF13570 PQQ_3: PQQ-like domai 53.9 22 0.00047 20.5 3.1 21 381-401 20-40 (40)
489 PRK10115 protease 2; Provision 51.3 3.1E+02 0.0067 28.6 28.4 70 208-284 175-255 (686)
490 TIGR03032 conserved hypothetic 51.2 2E+02 0.0042 26.4 10.6 107 57-264 188-315 (335)
491 KOG1896 mRNA cleavage and poly 50.8 3.8E+02 0.0082 29.5 15.9 64 216-284 1148-1213(1366)
492 PF03022 MRJP: Major royal jel 50.6 1.9E+02 0.0042 26.1 19.6 134 203-343 59-216 (287)
493 TIGR02608 delta_60_rpt delta-6 49.1 64 0.0014 20.5 4.7 19 34-52 2-20 (55)
494 KOG3616 Selective LIM binding 48.4 56 0.0012 33.2 6.4 35 252-287 13-47 (1636)
495 PF01011 PQQ: PQQ enzyme repea 47.4 38 0.00083 19.3 3.4 21 384-404 2-22 (38)
496 PF07250 Glyoxal_oxid_N: Glyox 47.4 2E+02 0.0043 25.3 10.8 66 316-392 69-139 (243)
497 TIGR02171 Fb_sc_TIGR02171 Fibr 47.1 1.6E+02 0.0035 31.2 9.6 46 313-358 349-401 (912)
498 COG4247 Phy 3-phytase (myo-ino 46.5 2E+02 0.0044 25.2 10.3 115 262-399 64-185 (364)
499 PLN00033 photosystem II stabil 45.9 2.8E+02 0.006 26.6 29.0 145 314-485 239-396 (398)
500 KOG1898 Splicing factor 3b, su 45.4 4.3E+02 0.0094 28.7 18.4 138 224-401 911-1049(1205)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-53 Score=361.24 Aligned_cols=323 Identities=17% Similarity=0.285 Sum_probs=282.8
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
..-+|.++|.|++|+|+|..||+|+.|.++|+||+.+... ..+.++|.
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---------------------------~~t~KgH~----- 157 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP---------------------------LFTCKGHK----- 157 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc---------------------------ceeecCCc-----
Confidence 3456999999999999999999999999999999998765 58899999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|.||+| +|||+.||+|+.||+|++||..+++....
T Consensus 158 -------~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~---------------------------------- 194 (480)
T KOG0271|consen 158 -------NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGR---------------------------------- 194 (480)
T ss_pred -------cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcccc----------------------------------
Confidence 99999999 68999999999999999999998875432
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCC-----CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~-----~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
.+.+|...|++++|.| ..++||++ .||.|+|||+. .+.++.. +.+|..+|+|+.
T Consensus 195 ------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~-------lsgHT~~VTCvr 254 (480)
T KOG0271|consen 195 ------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRT-------LSGHTASVTCVR 254 (480)
T ss_pred ------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEE-------eccCccceEEEE
Confidence 1489999999999965 67899999 99999999999 5556543 689999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc-----------CCC----
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-----------NDG---- 325 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s-----------~~~---- 325 (487)
|--+| +|++|+.|++|++|+...|.++ +.+.+| ..+|+.++.+ |.+
T Consensus 255 wGG~g--liySgS~DrtIkvw~a~dG~~~----r~lkGH-------------ahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 255 WGGEG--LIYSGSQDRTIKVWRALDGKLC----RELKGH-------------AHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred EcCCc--eEEecCCCceEEEEEccchhHH----Hhhccc-------------chheeeeeccchhhhhccccccccccCC
Confidence 98775 9999999999999999998877 777775 6677777766 223
Q ss_pred ---------------------CEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC
Q 011368 326 ---------------------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 383 (487)
Q Consensus 326 ---------------------~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 383 (487)
+.|++|+| .++.+|+-....+++..+.+|...+ ..+.||||++
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV---------------n~V~fSPd~r 380 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV---------------NHVSFSPDGR 380 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe---------------eeEEECCCcc
Confidence 34999976 9999999877677999999999876 6999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCC
Q 011368 384 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSS 460 (487)
Q Consensus 384 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~ 460 (487)
+||+++.|.+|++|+-.+|+ .+..+.+|-.+|++++++. |.++ |++|+.|.. ++| +..++...+.+|.+
T Consensus 381 ~IASaSFDkSVkLW~g~tGk-~lasfRGHv~~VYqvawsa--DsRL-----lVS~SkDsTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGK-FLASFRGHVAAVYQVAWSA--DSRL-----LVSGSKDSTLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred EEEEeecccceeeeeCCCcc-hhhhhhhccceeEEEEecc--CccE-----EEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence 99999999999999999995 4889999999999999998 6777 999999999 999 45566778889999
Q ss_pred CeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 461 KLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 461 ~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
.|..+.|+|||..+++|+.|. +++|.
T Consensus 453 EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999776 55664
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-50 Score=335.93 Aligned_cols=428 Identities=51% Similarity=0.822 Sum_probs=353.5
Q ss_pred cccchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccC
Q 011368 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (487)
....+.|+|.|.++.. +...+.|.++.|...|.+||+|+.+|.|.++.-+....
T Consensus 6 ~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--------------------- 59 (433)
T KOG1354|consen 6 KNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--------------------- 59 (433)
T ss_pred cchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc---------------------
Confidence 3456789999998844 55677899999999999999999999999998543321
Q ss_pred CCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (487)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
.++++...++.|+++|+|+++++++++|+.++|++..+...++..+.|++|++|.+........ ..+..
T Consensus 60 -~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~--------- 128 (433)
T KOG1354|consen 60 -GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLP--------- 128 (433)
T ss_pred -cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-ccccc---------
Confidence 2788999999999999999999999999999999777778899999999999999986544331 10100
Q ss_pred ccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCC
Q 011368 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS 247 (487)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 247 (487)
..+...................-...|++.+...|...|++|+++.|.+.+++++|-.|.+|+++...+++.+++++|.
T Consensus 129 -~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~ 207 (433)
T KOG1354|consen 129 -EEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPA 207 (433)
T ss_pred -ccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEcccc
Confidence 0000000000011111111223456788999899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368 248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 327 (487)
Q Consensus 248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 327 (487)
.++.....|++..|+|..+++++.++..|+|++.|+++..++..+.+.|+. +..|..+.+|.+....|..+.|+++|+|
T Consensus 208 nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiIsSISDvKFs~sGry 286 (433)
T KOG1354|consen 208 NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEIISSISDVKFSHSGRY 286 (433)
T ss_pred CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHhhhhhceEEccCCcE
Confidence 999999999999999999899999999999999999999999999999998 8999999999999999999999999999
Q ss_pred EEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368 328 LLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 407 (487)
Q Consensus 328 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~ 407 (487)
|++.+.-+|++||+....+++..++.|.....++|.+|++|++++.+.++|+.++.+++||+..+..+++++..|.....
T Consensus 287 ilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 287 ILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred EEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceee
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999998877777
Q ss_pred EEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368 408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 487 (487)
Q Consensus 408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~~ 487 (487)
++.+.......-... ..+. .++++.+.. .+......++...|.+.+|||..+.||++..+++|||++
T Consensus 367 tl~asr~~~~~~~~~---k~~~-----V~~~g~r~~-----~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 367 TLEASRKNMKPRKVL---KLRL-----VSSSGKRKR-----DEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQD 433 (433)
T ss_pred cccccccCCcccccc---ccee-----eecCCCccc-----cccccchhhhhhHHHhhccCCccceeeeeecCceEEecC
Confidence 777776653222111 1111 445544433 112334567888999999999999999999999999985
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-46 Score=320.21 Aligned_cols=286 Identities=21% Similarity=0.300 Sum_probs=247.1
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
-++.-+.+|..+.|++|++.||||+-+|.++||+..+... +.+|.||.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------------~~~l~gH~----- 217 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------------LQTLRGHT----- 217 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce---------------------------eEEEeccc-----
Confidence 3455678999999999999999999999999999876643 68999999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
+.|.++.|+|-.++..+++|+.||++++|++.+...+..
T Consensus 218 -------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~---------------------------------- 256 (459)
T KOG0272|consen 218 -------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD---------------------------------- 256 (459)
T ss_pred -------cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh----------------------------------
Confidence 899999998754577899999999999999988654433
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+.+|...|..++|+|+|++|+++ .|.+-++||+++..... -.++|...|.+++|+|+|
T Consensus 257 -------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL--------~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 257 -------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL--------LQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred -------------hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH--------hhcccccccceeEecCCC
Confidence 48999999999999999999999 99999999999655433 357999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~ 344 (487)
.++++|+.|..-+|||+++++.+ ..+.+ |..+|.+|.|+|+|..|++|+ |++++|||++.
T Consensus 316 -SL~~tGGlD~~~RvWDlRtgr~i----m~L~g-------------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~- 376 (459)
T KOG0272|consen 316 -SLAATGGLDSLGRVWDLRTGRCI----MFLAG-------------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM- 376 (459)
T ss_pred -ceeeccCccchhheeecccCcEE----EEecc-------------cccceeeEeECCCceEEeecCCCCcEEEeeecc-
Confidence 99999999999999999999865 66666 588999999999999999985 79999999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
...+..+.+|.+.+ +.+.|+| .|.+|+|++.|++++||.-.+... .
T Consensus 377 r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~-~----------------- 423 (459)
T KOG0272|consen 377 RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP-L----------------- 423 (459)
T ss_pred cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCccc-c-----------------
Confidence 88899999999877 5899999 789999999999999999876622 2
Q ss_pred CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecC-CeEEEEeC
Q 011368 424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHYA 487 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~~~ 487 (487)
..+.+|+.+|.+++.+||+..|++++. +.+.+|++
T Consensus 424 -----------------------------ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 424 -----------------------------KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred -----------------------------hhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 234567778888888888888888884 45778863
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-45 Score=310.94 Aligned_cols=285 Identities=16% Similarity=0.227 Sum_probs=247.6
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|..-|.|++|+|||+.||+|+.||+|++||..++++. ...|.+|.
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~--------------------------g~~l~gH~------- 200 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--------------------------GRALRGHK------- 200 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc--------------------------cccccCcc-------
Confidence 458899999999999999999999999999999988764 57799999
Q ss_pred ccccccceeEEEEEe---cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 109 SLEIEEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|++++|.| .|...+|++++.||.|+|||+..+.....
T Consensus 201 -----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--------------------------------- 242 (480)
T KOG0271|consen 201 -----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--------------------------------- 242 (480)
T ss_pred -----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE---------------------------------
Confidence 9999999987 56778999999999999999998876554
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH-- 262 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-- 262 (487)
+.+|+.+|+|++|--+| +|++| .|++|++|+... +.+.+ .+.+|...|+.++.+
T Consensus 243 --------------lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d-G~~~r-------~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 243 --------------LSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD-GKLCR-------ELKGHAHWVNHLALSTD 299 (480)
T ss_pred --------------eccCccceEEEEEcCCc-eEEecCCCceEEEEEccc-hhHHH-------hhcccchheeeeeccch
Confidence 48999999999998655 88999 999999999984 44443 578999999988876
Q ss_pred ---------cCC------------------------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccc
Q 011368 263 ---------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 309 (487)
Q Consensus 263 ---------p~~------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 309 (487)
|.+ +..|++|++|.++.+|+....+.. ...+
T Consensus 300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp----------------i~rm 363 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP----------------ITRM 363 (480)
T ss_pred hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc----------------hhhh
Confidence 223 135999999999999987654311 2224
Q ss_pred cccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE
Q 011368 310 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 388 (487)
Q Consensus 310 ~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg 388 (487)
.+|..-|+.+.||||++++|+++ |..|++||.++ ++.+..|++|-..+ ..++||.|.++|++|
T Consensus 364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------YqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQVAWSADSRLLVSG 427 (480)
T ss_pred hchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEEEeccCccEEEEc
Confidence 56789999999999999999998 69999999998 99999999999865 599999999999999
Q ss_pred cCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCC
Q 011368 389 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 447 (487)
Q Consensus 389 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~ 447 (487)
+.|.++++|++++. .....|.+|.+.|..+.++| +|.. .++|+.|.. ++|.
T Consensus 428 SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwsp--DG~r-----V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSP--DGQR-----VASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEeeee-eecccCCCCCceEEEEEecC--CCce-----eecCCCceEEEeec
Confidence 99999999999987 56889999999999999999 7777 899999998 8884
No 5
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-41 Score=281.15 Aligned_cols=445 Identities=43% Similarity=0.660 Sum_probs=337.8
Q ss_pred hhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcc
Q 011368 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (487)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (487)
..|+++|+||++.........+.|+++.|...|.||++|...|.|.+|.-+... +.++
T Consensus 6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----------------------~cey 63 (460)
T COG5170 6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----------------------GCEY 63 (460)
T ss_pred hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc----------------------ccch
Confidence 469999999999888888889999999999999999999999999999855332 3388
Q ss_pred eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (487)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (487)
++.+.|++|+.+|+|++++++++.|..+.|+-......++..+.|++|++|.+....++.+...+... .++++-+
T Consensus 64 kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~-----~~~~~~~ 138 (460)
T COG5170 64 KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD-----SFHSPMG 138 (460)
T ss_pred hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc-----ccccccC
Confidence 99999999999999999999999999999985444567888899999999999887665554443322 2233332
Q ss_pred ccccccC-CCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368 172 NFMNEHN-PPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 250 (487)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 250 (487)
..+.+.. ...........+-...+.+.+...|...|++++++.|.+.+++++|-.|.+|+++....++.+++++|..++
T Consensus 139 g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nme 218 (460)
T COG5170 139 GPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNME 218 (460)
T ss_pred CCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHH
Confidence 2221111 000111111112234566667789999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
.....|++..|+|..+..+..++..|.|++-|+++..++....+.+.. ...+.....+.+....|..+.|+++|+|+++
T Consensus 219 eLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 219 ELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred HHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence 888999999999998889999999999999999999888877777777 5666667778888899999999999999999
Q ss_pred EeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc----ee
Q 011368 331 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----GG 406 (487)
Q Consensus 331 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~----~~ 406 (487)
.+..+|++||.+....++.++..|......+++.|++|++++...+.||.|.+.+++|+..+..-+|-..+.+. .+
T Consensus 298 RdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~v 377 (460)
T COG5170 298 RDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHV 377 (460)
T ss_pred eccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEE
Confidence 99999999999998999999999999999999999999999999999999999999999999888888554321 12
Q ss_pred EEEeccCCcccc---ceEeeCCccccc-cccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeE
Q 011368 407 ITVEAGKNENRK---PILQAAPRARRS-SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL 482 (487)
Q Consensus 407 ~~~~~~~~~v~~---~~~~~~~~~~~~-~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~ 482 (487)
..+..+..+-.. ..-+-.+..... +.-.+.+...++...- ..-.....+.+.|.+..|||-..-+|++..+++
T Consensus 378 v~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~---~eD~d~ld~~k~ilh~sWhp~e~svaiaatnnl 454 (460)
T COG5170 378 VNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA---CEDPDNLDLLKKILHRSWHPFEDSVAIAATNNL 454 (460)
T ss_pred EecccCCcccccCcccccccccccccccccccccccccCcceee---ccCcchhHHHHHHHhhccCCcccceeeeecCce
Confidence 222222211111 100000000000 0000111111111000 000123345668889999999999999999999
Q ss_pred EEEeC
Q 011368 483 FFHYA 487 (487)
Q Consensus 483 ~i~~~ 487 (487)
|||++
T Consensus 455 fvfs~ 459 (460)
T COG5170 455 FVFSK 459 (460)
T ss_pred EEEec
Confidence 99985
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-38 Score=279.55 Aligned_cols=373 Identities=15% Similarity=0.217 Sum_probs=279.3
Q ss_pred chhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCc
Q 011368 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (487)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (487)
.++|+|+..++ .|..-|+|+.|+|||.++|+.+.||+|.|||-.+++.
T Consensus 177 GPPFKFk~s~r--------~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~------------------------ 224 (603)
T KOG0318|consen 177 GPPFKFKSSFR--------EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK------------------------ 224 (603)
T ss_pred CCCeeeeeccc--------ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE------------------------
Confidence 45677776666 3688999999999999999999999999999888865
Q ss_pred ceeEeeec---CCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368 91 YRYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (487)
Q Consensus 91 ~~~~~~~~---~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
+..+. +|+ +.|.+++| +||+..|++++.|.+++|||+.+.++..........+-..+...
T Consensus 225 ---vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 225 ---VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ---EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 35555 787 99999999 68999999999999999999999988776655544444444444
Q ss_pred ccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCC
Q 011368 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 246 (487)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 246 (487)
.....++.........++.... ..+.++ +.+|...|+++..+|++++|++| .||.|.-|+..++... ++
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d---~~~~~~-i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~-~~----- 357 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSD---PSVLKV-ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD-RL----- 357 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccC---CChhhe-ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc-cc-----
Confidence 4455555554444333333222 223333 38999999999999999999999 9999999999855432 11
Q ss_pred CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368 247 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 326 (487)
Q Consensus 247 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~ 326 (487)
.-+.|...|.+++.+..+ .+.+.+.|.++++.++..+..-.. ..++. ..+..+++..+++.
T Consensus 358 -~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~--~~~~l--------------g~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 358 -AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKS--EVVKL--------------GSQPKGLAVLSDGG 418 (603)
T ss_pred -ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCccccc--ceeec--------------CCCceeEEEcCCCC
Confidence 126799999999988754 688889999999999876542211 11111 12345888888887
Q ss_pred EEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC-ce
Q 011368 327 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AG 405 (487)
Q Consensus 327 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~-~~ 405 (487)
+++...+..|.+..-.+ .-....+..+. .+++++|+++.++.|+.||.|+||.+..+. ..
T Consensus 419 ~avv~~~~~iv~l~~~~-~~~~~~~~y~~------------------s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQT-KVSSIPIGYES------------------SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred EEEEEecCcEEEEecCC-cceeecccccc------------------ceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence 77776665566655222 11111122222 489999999999999999999999999765 33
Q ss_pred eEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC--Ccccccc-ccCCCeEEEEEcCCCCEEEEec-CC
Q 011368 406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSY-NLSSKLLHLAWHPTTNLIACAN-GN 480 (487)
Q Consensus 406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~--~~~~~~~-~~~~~v~~~~~spd~~~la~~s-~~ 480 (487)
...+..|..+++.++++| ++.+ |++|...+. .+|+.. +...... -|+.+|++++|+|+..++|+|| +.
T Consensus 480 e~~~~~h~a~iT~vaySp--d~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSP--DGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT 552 (603)
T ss_pred eeeeecccCCceEEEECC--CCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc
Confidence 557889999999999999 8888 999999999 899443 2222333 3889999999999999999999 55
Q ss_pred eEEEEeC
Q 011368 481 SLFFHYA 487 (487)
Q Consensus 481 ~~~i~~~ 487 (487)
+++||+.
T Consensus 553 ~Viiysv 559 (603)
T KOG0318|consen 553 NVIIYSV 559 (603)
T ss_pred eEEEEEc
Confidence 6999974
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-39 Score=261.19 Aligned_cols=297 Identities=15% Similarity=0.202 Sum_probs=231.9
Q ss_pred ccccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 27 EELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
....|++.|+.++..+.+ +.|++++.|.++.+|++...+.. -...++.+.||+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs---- 63 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS---- 63 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc----
Confidence 455799999999999974 78899999999999998755332 345678899999
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|..+.. +++|++.++++.|+++++||+.+++..+.
T Consensus 64 --------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~--------------------------------- 100 (315)
T KOG0279|consen 64 --------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRR--------------------------------- 100 (315)
T ss_pred --------eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEE---------------------------------
Confidence 78999999 68999999999999999999999865443
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
+.+|...|.+++|++|.+.|++| .|.+|++|++. +...+.+. -..+.+.|.|+.|+|+
T Consensus 101 --------------f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~------~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 101 --------------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH------EDSHREWVSCVRFSPN 159 (315)
T ss_pred --------------EEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe------cCCCcCcEEEEEEcCC
Confidence 48999999999999999999999 99999999998 55555432 1223789999999998
Q ss_pred C-CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368 265 Y-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR 342 (487)
Q Consensus 265 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~ 342 (487)
. ..+|++++.|+++++||+++-+.. ..+- +|.+.++.+++||||..+++|+ ||.+.+||++
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~----~~~~-------------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLR----TTFI-------------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchh----hccc-------------cccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 3 289999999999999999986543 3444 4689999999999999999986 6999999998
Q ss_pred CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
. ++.+..+.+.... .+++|+|+.-.|+.+. +..|+|||+.++.. +.+++...... +
T Consensus 223 ~-~k~lysl~a~~~v----------------~sl~fspnrywL~~at-~~sIkIwdl~~~~~-v~~l~~d~~g~-----s 278 (315)
T KOG0279|consen 223 E-GKNLYSLEAFDIV----------------NSLCFSPNRYWLCAAT-ATSIKIWDLESKAV-VEELKLDGIGP-----S 278 (315)
T ss_pred C-CceeEeccCCCeE----------------eeEEecCCceeEeecc-CCceEEEeccchhh-hhhcccccccc-----c
Confidence 6 7777777654432 5999999977666555 45699999998733 22221110000 0
Q ss_pred eCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEe
Q 011368 423 AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 486 (487)
Q Consensus 423 ~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~ 486 (487)
. ..-.-...+++|++||..|+.|-.+ .+.+|.
T Consensus 279 ------------~--------------------~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 279 ------------S--------------------KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ------------c--------------------ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 0 0001134689999999999988855 477886
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=259.61 Aligned_cols=290 Identities=12% Similarity=0.193 Sum_probs=234.3
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.+-+|.+.|+++.|++|+++|++++.||.+.|||.-+..+. ..+.-..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------------haipl~s----- 97 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------------HAIPLPS----- 97 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---------------------------eEEecCc-----
Confidence 34568999999999999999999999999999998766542 2233333
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|...+| +|.|+++++|+-|+...||++...+....
T Consensus 98 -------~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~---------------------------------- 134 (343)
T KOG0286|consen 98 -------SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGN---------------------------------- 134 (343)
T ss_pred -------eeEEEEEE--CCCCCeEEecCcCceeEEEeccccccccc----------------------------------
Confidence 77999999 67899999999999999999985421110
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-C
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-I 264 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~ 264 (487)
....+. +.+|.+.+.|+.|-+| ..|+++ .|.+..+||++++.+.. .+.+|.+.|.+++++| +
T Consensus 135 ------~~v~r~-l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~--------~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 135 ------VRVSRE-LAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQ--------VFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred ------ceeeee-ecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEE--------EecCCcccEEEEecCCCC
Confidence 011122 4899999999999975 466777 99999999999655433 3679999999999999 6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 343 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~ 343 (487)
+ +.+++|+-|+..+|||+|.+... +.|.+ |+..|+++.|.|+|.-+++|+| ++.++||++.
T Consensus 199 ~-ntFvSg~cD~~aklWD~R~~~c~----qtF~g-------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 199 G-NTFVSGGCDKSAKLWDVRSGQCV----QTFEG-------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred C-CeEEecccccceeeeeccCccee----Eeecc-------------cccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 6 99999999999999999998765 77777 4889999999999999999976 9999999997
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
...+..+.... .+.+|++++||..|++|.+|..|..+.+||.-.+ +...
T Consensus 261 -D~~~a~ys~~~-------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg---------------- 309 (343)
T KOG0286|consen 261 -DQELAVYSHDS-------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVG---------------- 309 (343)
T ss_pred -CcEEeeeccCc-------------ccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEE----------------
Confidence 77777777332 2335579999999999999999999999998765 2222
Q ss_pred CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEe
Q 011368 424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 486 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~ 486 (487)
.+.+|+++|.++..+|||.-+++||-| .+.||+
T Consensus 310 ------------------------------~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 310 ------------------------------VLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------------------------------EeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 344667788888899999999999944 588884
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-40 Score=283.82 Aligned_cols=242 Identities=20% Similarity=0.297 Sum_probs=215.5
Q ss_pred ccccccCcEEEEEEcCC--CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 27 EELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~--~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
...+|+..|.++.|+|. +.-||+|+.||++++|++++... +..+.+|.
T Consensus 212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~---------------------------l~~l~gH~--- 261 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP---------------------------LQDLEGHL--- 261 (459)
T ss_pred EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc---------------------------hhhhhcch---
Confidence 35579999999999997 56899999999999999987654 47789999
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..|..++|+ |+|++|+|++.|.+-++||+.++.....
T Consensus 262 ---------~RVs~VafH--PsG~~L~TasfD~tWRlWD~~tk~ElL~-------------------------------- 298 (459)
T KOG0272|consen 262 ---------ARVSRVAFH--PSGKFLGTASFDSTWRLWDLETKSELLL-------------------------------- 298 (459)
T ss_pred ---------hhheeeeec--CCCceeeecccccchhhcccccchhhHh--------------------------------
Confidence 889999995 7899999999999999999998864432
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
..+|...|.+++|.|||.++++| .|..-++||++++...+. +.+|...|.+|+|+|
T Consensus 299 ---------------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--------L~gH~k~I~~V~fsP 355 (459)
T KOG0272|consen 299 ---------------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--------LAGHIKEILSVAFSP 355 (459)
T ss_pred ---------------hcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--------ecccccceeeEeECC
Confidence 37999999999999999999999 999999999996655442 589999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-CCeEEEEeC
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDI 341 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d~~i~iwd~ 341 (487)
+| ..||+|+.|++++|||++....+ .++.. |.+-|+.|.|+| .|.+|++++ |++++||..
T Consensus 356 NG-y~lATgs~Dnt~kVWDLR~r~~l----y~ipA-------------H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 356 NG-YHLATGSSDNTCKVWDLRMRSEL----YTIPA-------------HSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred Cc-eEEeecCCCCcEEEeeecccccc----eeccc-------------ccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 99 99999999999999999987654 55555 588999999999 688899986 599999999
Q ss_pred CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368 342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd 398 (487)
++ ..+++.+.+|+..+ .++.+++|+++|++++.|+++++|.
T Consensus 418 ~~-~~~~ksLaGHe~kV---------------~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RT-WSPLKSLAGHEGKV---------------ISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CC-cccchhhcCCccce---------------EEEEeccCCceEEEeccCceeeecc
Confidence 87 99999999999865 6999999999999999999999995
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-38 Score=290.03 Aligned_cols=381 Identities=14% Similarity=0.148 Sum_probs=285.4
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|..||.-++|+|.|.+|++|+.||.++|||+..+.. ...|+||.
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~---------------------------th~fkG~g-------- 147 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC---------------------------THSFKGHG-------- 147 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE---------------------------EEEecCCC--------
Confidence 4899999999999999999999999999999987765 58899999
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccce-eE--------eeec-------------------------
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KK--------IKEM------------------------- 155 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~--------~~~~------------------------- 155 (487)
+.|.++.|+|......|++|..|+++++||+.+... .. +...
T Consensus 148 ----GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 148 ----GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ 223 (775)
T ss_pred ----ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence 999999999877777899999999999999985432 00 0000
Q ss_pred -------CCCCceeeeecccc-----ccccccccCCCCcceeeeee----------------------------------
Q 011368 156 -------DHFPFVSSENTLLA-----EKNFMNEHNPPSFAHGYHLE---------------------------------- 189 (487)
Q Consensus 156 -------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------------------------------- 189 (487)
+....+-.+++... ...++..+..+.........
T Consensus 224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ 303 (775)
T KOG0319|consen 224 YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ 303 (775)
T ss_pred hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence 00000001111111 01111111110000000000
Q ss_pred ----e-------------------------------------------eccceeeeecccCCCceeEEEeCCCCCEEEEe
Q 011368 190 ----W-------------------------------------------TENMATKVYPHAHDFNINSISNNSDCETFVSA 222 (487)
Q Consensus 190 ----~-------------------------------------------~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~ 222 (487)
+ +.....-..+.+|...|.++....+|-+|++|
T Consensus 304 nl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~ 383 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATG 383 (775)
T ss_pred eEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEe
Confidence 0 00111111357899999999966678899999
Q ss_pred -cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc
Q 011368 223 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 301 (487)
Q Consensus 223 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 301 (487)
.|.++++|.++.+...... .....+|.+.|.+++++..+..+|+++|.|+++++|++...+.-.. ...+.
T Consensus 384 sKD~svilWr~~~~~~~~~~----~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~---- 454 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLC----VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLT---- 454 (775)
T ss_pred cCCceEEEEEecCCcchhhh----hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-cceeh----
Confidence 9999999999533221111 1245789999999999988889999999999999999987332110 01111
Q ss_pred ccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC
Q 011368 302 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 380 (487)
Q Consensus 302 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 380 (487)
.+.....|...|++++++|+.+++++|+ |.+.+||++.. ...+.++.+|...+ +++.|+|
T Consensus 455 ---~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGv---------------w~V~Fs~ 515 (775)
T KOG0319|consen 455 ---CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGV---------------WCVSFSK 515 (775)
T ss_pred ---hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccce---------------EEEEecc
Confidence 1112345789999999999999999997 69999999994 89999999999865 7999999
Q ss_pred CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCccccccc
Q 011368 381 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN 457 (487)
Q Consensus 381 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~ 457 (487)
..+.++|+|.|++|+||.+.+. .+.+++.+|...|-...|.. +++. |+|++.||. ++| +..+-...+-.
T Consensus 516 ~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~--~~~q-----liS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 516 NDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIR--NGKQ-----LISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred ccceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeee--CCcE-----EEeccCCCcEEEEeccchhhhhhhhh
Confidence 9999999999999999999998 77999999999999999987 6666 999999999 999 55555666779
Q ss_pred cCCCeEEEEEcCCCCEEEEecCCeEEEE
Q 011368 458 LSSKLLHLAWHPTTNLIACANGNSLFFH 485 (487)
Q Consensus 458 ~~~~v~~~~~spd~~~la~~s~~~~~i~ 485 (487)
|.++|.+++-+|.+..+++|+.|+.+++
T Consensus 588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred ccceeEEEeecCccceeEecCCCeEEEE
Confidence 9999999999999999999998885554
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=249.03 Aligned_cols=289 Identities=16% Similarity=0.218 Sum_probs=235.8
Q ss_pred CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (487)
Q Consensus 45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~ 124 (487)
-+|+++++|.+||+|...+|.+ ..+++-.. ..|+.+.. .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C---------------------------~rTiqh~d------------sqVNrLei--T 49 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC---------------------------SRTIQHPD------------SQVNRLEI--T 49 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE---------------------------EEEEecCc------------cceeeEEE--c
Confidence 5899999999999999998875 46666444 88999999 6
Q ss_pred CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD 204 (487)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
|+++.|++++. ..||+||++++... ++.++ .+|.
T Consensus 50 pdk~~LAaa~~-qhvRlyD~~S~np~--------------------------------------------Pv~t~-e~h~ 83 (311)
T KOG0315|consen 50 PDKKDLAAAGN-QHVRLYDLNSNNPN--------------------------------------------PVATF-EGHT 83 (311)
T ss_pred CCcchhhhccC-CeeEEEEccCCCCC--------------------------------------------ceeEE-eccC
Confidence 88888888765 57999999988632 33333 8999
Q ss_pred CceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011368 205 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 283 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 283 (487)
..|..+.|..+|+.+++| .||+++|||++. -.+. +...|.++|+++..+|+. ..|++|..+|.|++||+
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~q--------R~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQ--------RNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDL 153 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccC-cccc--------hhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEc
Confidence 999999999999999999 999999999995 2232 234577999999999998 99999999999999999
Q ss_pred cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCC-----Cceeeeeeccccc
Q 011368 284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-----STPVATFKIHEHL 357 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~-----~~~~~~~~~~~~~ 357 (487)
...... ..+- ++....|.++...|||.+|+++.+ |+.++|++-.. -.++..++.|+.-
T Consensus 154 ~~~~c~----~~li------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 154 GENSCT----HELI------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred cCCccc----cccC------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence 986432 1111 112468999999999999999976 99999998641 2456677888765
Q ss_pred ccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceee
Q 011368 358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 437 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 437 (487)
+ +.+-+|||+++||++|.|.+++||+.++.-.....+++|..++...+|+. ++.+ |++
T Consensus 218 i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~--dg~Y-----lvT 275 (311)
T KOG0315|consen 218 I---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA--DGEY-----LVT 275 (311)
T ss_pred E---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc--CccE-----EEe
Confidence 4 58999999999999999999999999987445778899999999999998 8888 999
Q ss_pred ecccce-ecC--CCCCccccccccCCCeEEEEEc
Q 011368 438 GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH 468 (487)
Q Consensus 438 g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~s 468 (487)
|+.|.. ++| ..++.....-+|.+.-.+++.+
T Consensus 276 assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 276 ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999 999 4445556666777777676654
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-37 Score=249.66 Aligned_cols=252 Identities=18% Similarity=0.282 Sum_probs=207.9
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+|+..|..++.++||++.++++.|+++++||+.+++. ...|.||.
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~---------------------------t~~f~GH~------ 105 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES---------------------------TRRFVGHT------ 105 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcE---------------------------EEEEEecC------
Confidence 445888999999999999999999999999999998864 47799999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| ++|+..+++|+.|++|++|++.++.......
T Consensus 106 ------~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~~--------------------------------- 144 (315)
T KOG0279|consen 106 ------KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIHE--------------------------------- 144 (315)
T ss_pred ------CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEec---------------------------------
Confidence 88999999 6889999999999999999998765443310
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
..+.+.|.|+.|+|+ ..+|+++ .|++|++||+++.+ .. ..+.+|++.++.++++||
T Consensus 145 -------------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~-------~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 145 -------------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LR-------TTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred -------------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hh-------hccccccccEEEEEECCC
Confidence 234788999999997 6788888 99999999999433 22 356799999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 344 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~ 344 (487)
| .++++|+.||.+.+||++.++.+ ..+.. ...|.+++|+|+...|+.+.+..|+|||+.+
T Consensus 204 G-slcasGgkdg~~~LwdL~~~k~l----ysl~a--------------~~~v~sl~fspnrywL~~at~~sIkIwdl~~- 263 (315)
T KOG0279|consen 204 G-SLCASGGKDGEAMLWDLNEGKNL----YSLEA--------------FDIVNSLCFSPNRYWLCAATATSIKIWDLES- 263 (315)
T ss_pred C-CEEecCCCCceEEEEEccCCcee----EeccC--------------CCeEeeEEecCCceeEeeccCCceEEEeccc-
Confidence 9 99999999999999999998754 44444 6789999999999888888778899999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+..+..++...... ........| .+++||+||+.|++|-.|+.|++|.+.
T Consensus 264 ~~~v~~l~~d~~g~--s~~~~~~~c----lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 KAVVEELKLDGIGP--SSKAGDPIC----LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhhhcccccccc--ccccCCcEE----EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 77777665432211 000001112 589999999999999999999999875
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=273.62 Aligned_cols=368 Identities=15% Similarity=0.190 Sum_probs=283.8
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|+++.|+.|.++|++|++|-+++||.++..+.. ....+.+|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-------------------------~~~~l~gHk------ 189 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-------------------------FTYALNGHK------ 189 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-------------------------ceEeccCCC------
Confidence 4568899999999999999999999999999999876532 346789999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccc------------------------cc------eeEeeec--
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD------------------------QK------VKKIKEM-- 155 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------------~~------~~~~~~~-- 155 (487)
+.|-+.-| ..+...+.+.+.||.+.+|.... .+ .....++
T Consensus 190 ------d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 190 ------DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred ------cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 88888888 57788899999999999998761 11 0001111
Q ss_pred -CCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEc
Q 011368 156 -DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNL 232 (487)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~ 232 (487)
.....+.+..|+.....++..-..+....-.... -..+.. +.-...+|..++|+..|..||.| .-|.+.+|+.
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---f~lih~-LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---FNLIHS-LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCC---ceEEEE-eecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 1124455555555444333322222111111111 111111 23345779999999999999997 5689999999
Q ss_pred cCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc
Q 011368 233 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 312 (487)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 312 (487)
......+ +.++|...+.+++++||| ++||+|++||.|+|||..++-+. .+|.. |
T Consensus 338 qsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~----vTFte-------------H 391 (893)
T KOG0291|consen 338 QSESYVL--------KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCF----VTFTE-------------H 391 (893)
T ss_pred eccceee--------eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEE----EEecc-------------C
Confidence 9655443 357899999999999999 99999999999999999998755 56666 5
Q ss_pred ccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 313 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 313 ~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
++.|+.+.|+..|+.|++.+ ||+|+.||+.. .+..+++..+.... ..+++..|.|..+++|+.|
T Consensus 392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Q--------------fscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQ--------------FSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred CCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCcee--------------eeEEEEcCCCCEEEeeccc
Confidence 89999999999999999876 79999999986 88888888766532 1478899999999999988
Q ss_pred C-cEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCc--cccccccCCCeEEEEE
Q 011368 392 N-LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--HELSYNLSSKLLHLAW 467 (487)
Q Consensus 392 g-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~--~~~~~~~~~~v~~~~~ 467 (487)
. .|++|++++| ..+-.+.+|.+||.+++|+| .+.. |++|+-|.. ++|+.-.. ......+...++.++|
T Consensus 457 ~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~--~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsf 528 (893)
T KOG0291|consen 457 SFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSP--DGSL-----LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSF 528 (893)
T ss_pred eEEEEEEEeecC-eeeehhcCCCCcceeeEEcc--ccCe-----EEeccccceEEEEEeeccCceeeeEeeccceeEEEE
Confidence 5 6999999999 55889999999999999999 4555 999999999 99955433 4445677788999999
Q ss_pred cCCCCEEEEecCC-eEEEEeC
Q 011368 468 HPTTNLIACANGN-SLFFHYA 487 (487)
Q Consensus 468 spd~~~la~~s~~-~~~i~~~ 487 (487)
+|||+-||+++-| .+-+|.+
T Consensus 529 rPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cCCCCeEEEEEecceEEEEEh
Confidence 9999999999966 5888863
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-37 Score=285.03 Aligned_cols=266 Identities=21% Similarity=0.287 Sum_probs=219.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhcccc------ccccCCCcceeEeeecCCCcccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD------FTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
...++|..|++|+.+||.|-.|-.|++|.+...+..+ ......+....- .......+.....++-||+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~--lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~---- 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK--LKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS---- 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhcc--ccchhhhccccccccchhhhhccccCCceeEEeecCC----
Confidence 4579999999999999999999999999988543210 011111111100 0111112223445688999
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
++|...+| +|+.++|++++.|+++|+|.+.+....-.
T Consensus 452 --------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~V~--------------------------------- 488 (707)
T KOG0263|consen 452 --------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCLVI--------------------------------- 488 (707)
T ss_pred --------Cceeeeee--cccccceeeccCCcceeeeecccceeEEE---------------------------------
Confidence 99999999 68899999999999999999998765443
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
+ .+|..+|+++.|+|-|-++|++ .|++-++|.... ....+ .+.+|.+.|.|+.|+|+
T Consensus 489 -------------y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlR-------ifaghlsDV~cv~FHPN 546 (707)
T KOG0263|consen 489 -------------Y-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLR-------IFAGHLSDVDCVSFHPN 546 (707)
T ss_pred -------------e-cCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchh-------hhcccccccceEEECCc
Confidence 2 7999999999999999999999 999999999984 33333 46899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
. .++++||.|.++|+||..+|..+ +.|.+| .++|.+++|||+|++|++|+ |+.|.+||+..
T Consensus 547 s-~Y~aTGSsD~tVRlWDv~~G~~V----RiF~GH-------------~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 547 S-NYVATGSSDRTVRLWDVSTGNSV----RIFTGH-------------KGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred c-cccccCCCCceEEEEEcCCCcEE----EEecCC-------------CCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9 99999999999999999999865 787774 89999999999999999996 59999999997
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
++++..+.+|.+.+ .++.||.||..||+|+.|++|++||+..-
T Consensus 609 -~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 -GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 89999999997654 69999999999999999999999999754
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.4e-36 Score=247.59 Aligned_cols=285 Identities=18% Similarity=0.283 Sum_probs=228.0
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|+++.|+|+|.+||+|+.|..|.+|++..... -...+++|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------------------------N~~~lkgHs------ 90 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------------------------NFWVLKGHS------ 90 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------------------------ceeeecccc------
Confidence 455899999999999999999999999999999765443 257788999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
++|..+.| ..++..+++++.|++|+.||+++|+....
T Consensus 91 ------gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk----------------------------------- 127 (338)
T KOG0265|consen 91 ------GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK----------------------------------- 127 (338)
T ss_pred ------ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh-----------------------------------
Confidence 99999999 68999999999999999999999986544
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
..+|...|+.+.-+.-|..+ .++ .|+++++||+++ +.++++ ......++++.|..++
T Consensus 128 ------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t--------~~~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 128 ------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKT--------FENKYQLTAVGFKDTS 186 (338)
T ss_pred ------------hccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhc--------cccceeEEEEEecccc
Confidence 37899999998865545555 456 999999999994 434332 2234568999999998
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~ 344 (487)
..+.+|+-|+.|++||++.+... .++.+ |...|+.+..+|+|.++.+- .|+++++||++-.
T Consensus 187 -~qv~sggIdn~ikvWd~r~~d~~----~~lsG-------------h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 187 -DQVISGGIDNDIKVWDLRKNDGL----YTLSG-------------HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred -cceeeccccCceeeeccccCcce----EEeec-------------ccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 99999999999999999987755 66666 48899999999999999986 4799999999741
Q ss_pred ---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368 345 ---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 421 (487)
Q Consensus 345 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 421 (487)
.+++..+.+|.....+. ...++|||+++.+.+|+.|..+++||.... ..+..+
T Consensus 249 ~p~~R~v~if~g~~hnfekn-----------lL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lykl------------ 304 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKN-----------LLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYKL------------ 304 (338)
T ss_pred CCCCceEEEeecchhhhhhh-----------cceeeccCCCCccccccccceEEEeecccc-cEEEEc------------
Confidence 34577777765432110 147899999999999999999999998754 223333
Q ss_pred eeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEE
Q 011368 422 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF 484 (487)
Q Consensus 422 ~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i 484 (487)
.+|...|+.++|+|..++|.+++.| .+|+
T Consensus 305 ----------------------------------pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 305 ----------------------------------PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ----------------------------------CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 3455578888888988888877744 4654
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.8e-36 Score=240.85 Aligned_cols=270 Identities=16% Similarity=0.245 Sum_probs=220.0
Q ss_pred ccccc-CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDV-DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~-~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.++|. ..|+.+.+.|++++||+++. -.||+||+.++... ++.++.+|.
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-------------------------Pv~t~e~h~----- 83 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-------------------------PVATFEGHT----- 83 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-------------------------ceeEEeccC-----
Confidence 45564 47999999999999999986 47999999988642 578999999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|++|.| ..+|+++++|+.||+++|||++.-...+.
T Consensus 84 -------kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~---------------------------------- 120 (311)
T KOG0315|consen 84 -------KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRN---------------------------------- 120 (311)
T ss_pred -------CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchh----------------------------------
Confidence 88999999 57999999999999999999998544332
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
..|..+|+++..+|+...|++| .+|.|++||+... .+... -+++....|.++...|+|
T Consensus 121 --------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~~------liPe~~~~i~sl~v~~dg 179 (311)
T KOG0315|consen 121 --------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTHE------LIPEDDTSIQSLTVMPDG 179 (311)
T ss_pred --------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC-ccccc------cCCCCCcceeeEEEcCCC
Confidence 4678999999999999999999 9999999999944 33322 134455789999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~ 344 (487)
.+++.+...|...+|++-..... . ...+...+..|++.+..+.+|||+++|++++ |.+++||+....
T Consensus 180 -sml~a~nnkG~cyvW~l~~~~~~----s-------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 180 -SMLAAANNKGNCYVWRLLNHQTA----S-------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred -cEEEEecCCccEEEEEccCCCcc----c-------cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 99999999999999999874321 1 1122334667899999999999999999985 799999999874
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccce
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI 420 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 420 (487)
-+....+.+|+.++ ++++||.||+||++|+.|+.+++|++..+++ .....+|..+..+++
T Consensus 248 ~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 248 FKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQYQGHHKAAVCVA 307 (311)
T ss_pred eeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccCce-eeecCCcccccEEEE
Confidence 36667788888754 8999999999999999999999999999854 566666665544433
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.1e-36 Score=261.50 Aligned_cols=332 Identities=16% Similarity=0.255 Sum_probs=262.2
Q ss_pred ccccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 27 EELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
+.+.|..+|.+.+|+|-.. .|++|+.|-+.++|++...... ..-...|++... +-
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~---~~~q~~lrh~~~--------------~~------- 228 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI---GSTQLVLRHCIR--------------EG------- 228 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc---cchhhhhhhhhh--------------hh-------
Confidence 4455899999999999766 8999999999999998741110 011112221111 11
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
.++..-...|++++| +.+|..||+|+.||.+++|+..++....
T Consensus 229 -~~s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t---------------------------------- 271 (524)
T KOG0273|consen 229 -GKSVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST---------------------------------- 271 (524)
T ss_pred -cccCCccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh----------------------------------
Confidence 112222367999999 6899999999999999999998765433
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
+..|.++|.++.|+..|++|+++ .|+++.+||..++.. .+ .++-|..+-..|.|-.+
T Consensus 272 --------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q-------~f~~~s~~~lDVdW~~~ 329 (524)
T KOG0273|consen 272 --------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQ-------QFEFHSAPALDVDWQSN 329 (524)
T ss_pred --------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EE-------eeeeccCCccceEEecC
Confidence 37899999999999999999999 999999999985443 32 24556666677889876
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 343 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~ 343 (487)
..+++++.|+.|+++.+...... .++.+ |.+.|.++.|+|.|.+|++++| ++++||....
T Consensus 330 --~~F~ts~td~~i~V~kv~~~~P~----~t~~G-------------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 330 --DEFATSSTDGCIHVCKVGEDRPV----KTFIG-------------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred --ceEeecCCCceEEEEEecCCCcc----eeeec-------------ccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 58999999999999988876544 66666 5899999999999999999975 9999999875
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCC---------CEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---------LHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
......+.+|...+ ..+.|+|+| ..|++++.|++|++||+..+ .....|-.|..
T Consensus 391 -~~~~~~l~~Hskei---------------~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~ 453 (524)
T KOG0273|consen 391 -SNSVHDLQAHSKEI---------------YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQE 453 (524)
T ss_pred -Ccchhhhhhhccce---------------eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCC
Confidence 78888999998754 488898854 47899999999999999988 56888999999
Q ss_pred ccccceEeeCCccccccccceeeecccce-ecCCCC-CccccccccCCCeEEEEEcCCCCEEEEec-CCeEEE
Q 011368 415 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 484 (487)
Q Consensus 415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i 484 (487)
+|.+++|+| ++++ +++|+.|+. .+|+.. ..+...+.-...|..++|+-+|++|..+- ++.+++
T Consensus 454 pVysvafS~--~g~y-----lAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 454 PVYSVAFSP--NGRY-----LASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred ceEEEEecC--CCcE-----EEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 999999999 7888 999999999 999543 23445556677799999999998877555 444544
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.8e-38 Score=268.04 Aligned_cols=277 Identities=20% Similarity=0.329 Sum_probs=239.5
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
-+|..+.|.|+|+.|++|+..|.+.+|+.. .+.+-..+++|.
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~---------------------------~fnFEtilQaHD----------- 138 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGT---------------------------SFNFETILQAHD----------- 138 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCc---------------------------eeeHHHHhhhhc-----------
Confidence 479999999999999999999999999964 233346678888
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
.+|.++.| ++++.++++|..+|.|++|+..-...+.+
T Consensus 139 -s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~---------------------------------------- 175 (464)
T KOG0284|consen 139 -SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKII---------------------------------------- 175 (464)
T ss_pred -ccceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHh----------------------------------------
Confidence 99999999 58899999999999999999876543332
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
...|...|++++|+|+...|++| +||+|+|||....... ..+.+|.-.|.+++|+|.. .++++
T Consensus 176 -------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee--------~vL~GHgwdVksvdWHP~k-gLias 239 (464)
T KOG0284|consen 176 -------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE--------RVLRGHGWDVKSVDWHPTK-GLIAS 239 (464)
T ss_pred -------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh--------heeccCCCCcceeccCCcc-ceeEE
Confidence 13455899999999999999999 9999999999855442 2468999999999999998 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
++.|..|++||.+++.++ ..+.. |...|..+.|+|++.+|++++ |..++++|+++ .+.+..
T Consensus 240 gskDnlVKlWDprSg~cl----~tlh~-------------HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~ 301 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCL----ATLHG-------------HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFT 301 (464)
T ss_pred ccCCceeEeecCCCcchh----hhhhh-------------ccceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHH
Confidence 999999999999999865 44555 578999999999999999986 69999999996 788999
Q ss_pred eecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccc
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 429 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 429 (487)
+++|...+ +++.|+| ...++.+|+.||.|..|.+...+.......+|...|+++++.| -|.+
T Consensus 302 ~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP--lGhi 364 (464)
T KOG0284|consen 302 YRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP--LGHI 364 (464)
T ss_pred hhcchhhh---------------eeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc--ccee
Confidence 99999855 6999999 5678899999999999999866566667789999999999999 5666
Q ss_pred ccccceeeecccce-ecC
Q 011368 430 SSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 430 ~~~~~l~~g~~~~~-~~w 446 (487)
|++|+.|.. +.|
T Consensus 365 -----l~tgsnd~t~rfw 377 (464)
T KOG0284|consen 365 -----LATGSNDRTVRFW 377 (464)
T ss_pred -----EeecCCCcceeee
Confidence 999999999 999
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=243.38 Aligned_cols=244 Identities=24% Similarity=0.409 Sum_probs=212.6
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..-|..+||+|.|+++|+|+.|+...||++.+.+. ....+..+++.+|+
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~---------------------~g~~~v~r~l~gHt---------- 145 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA---------------------EGNVRVSRELAGHT---------- 145 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccc---------------------cccceeeeeecCcc----------
Confidence 44688999999999999999999999999986532 11345567899999
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+-+.+.+| .++..|+|++.|.+..+||+++++....
T Consensus 146 --gylScC~f---~dD~~ilT~SGD~TCalWDie~g~~~~~--------------------------------------- 181 (343)
T KOG0286|consen 146 --GYLSCCRF---LDDNHILTGSGDMTCALWDIETGQQTQV--------------------------------------- 181 (343)
T ss_pred --ceeEEEEE---cCCCceEecCCCceEEEEEcccceEEEE---------------------------------------
Confidence 88999999 4577899999999999999999987655
Q ss_pred ccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
+.+|.+.|.+++++| +++.+++| -|+..++||++. +.+.+ .+++|...|.+|.|.|+| .-|
T Consensus 182 --------f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~q-------tF~ghesDINsv~ffP~G-~af 244 (343)
T KOG0286|consen 182 --------FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQ-------TFEGHESDINSVRFFPSG-DAF 244 (343)
T ss_pred --------ecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeE-------eecccccccceEEEccCC-Cee
Confidence 489999999999999 99999999 999999999994 46665 478999999999999999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
++|++|++.|+||+|..+.+ ..++. .....+|++++||..|++|++|. |.++.+||.-. ++.+
T Consensus 245 atGSDD~tcRlyDlRaD~~~----a~ys~-----------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~v 308 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQEL----AVYSH-----------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERV 308 (343)
T ss_pred eecCCCceeEEEeecCCcEE----eeecc-----------CcccCCceeEEEcccccEEEeeecCCceeEeeccc-cceE
Confidence 99999999999999997654 45543 12246899999999999999984 69999999976 8889
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd 398 (487)
..+.+|++.+ .++..+|||.-+++|+.|..++||.
T Consensus 309 g~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 GVLAGHENRV---------------SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEeeccCCee---------------EEEEECCCCcEEEecchhHheeecC
Confidence 9999999866 6999999999999999999999994
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.1e-37 Score=263.06 Aligned_cols=275 Identities=19% Similarity=0.274 Sum_probs=232.0
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..+|..|+| .|+|+.|++|+..|.+.+|+...-....+
T Consensus 96 kc~V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFEti---------------------------------------- 133 (464)
T KOG0284|consen 96 KCPVNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFETI---------------------------------------- 133 (464)
T ss_pred ccceeeEEE--cCCCceeEeecccccEEEecCceeeHHHH----------------------------------------
Confidence 378999999 68999999999999999999854332222
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~ 270 (487)
+..|.+.|+++.|++++.++++| .+|.|++|+...+. ++ .+.+ |...|++++|+|+. ..|+
T Consensus 134 -------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk-------~~~ahh~eaIRdlafSpnD-skF~ 196 (464)
T KOG0284|consen 134 -------LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK-------IIQAHHAEAIRDLAFSPND-SKFL 196 (464)
T ss_pred -------hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH-------HhhHhhhhhhheeccCCCC-ceeE
Confidence 48999999999999999999999 99999999988332 21 1234 44899999999998 9999
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~ 349 (487)
++++||+|+|||....+.. +.+.+ |...|.+++|+|...+|++++ |+.|++||.++ +.++.
T Consensus 197 t~SdDg~ikiWdf~~~kee----~vL~G-------------HgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~ 258 (464)
T KOG0284|consen 197 TCSDDGTIKIWDFRMPKEE----RVLRG-------------HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLA 258 (464)
T ss_pred EecCCCeEEEEeccCCchh----heecc-------------CCCCcceeccCCccceeEEccCCceeEeecCCC-cchhh
Confidence 9999999999999876533 44555 578899999999999999986 59999999998 99999
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccc
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 429 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 429 (487)
++..|+..+ ..+.|+|++.+|+++|.|..++++|+++. ..+..+++|+..++++.+.|-. ..+
T Consensus 259 tlh~HKntV---------------l~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~-~~l 321 (464)
T KOG0284|consen 259 TLHGHKNTV---------------LAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLN-ESL 321 (464)
T ss_pred hhhhccceE---------------EEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeecccccc-ccc
Confidence 999999865 69999999999999999999999999966 4588999999999999999963 333
Q ss_pred ccccceeeecccce-ecCCCC---CccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 430 SSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 430 ~~~~~l~~g~~~~~-~~w~~~---~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
|.+|+.|+. ..|..+ .....-..|+..|.+++|||=|-+||+|+.|. +.+|.
T Consensus 322 -----ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 322 -----FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred -----eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 899999999 777443 23334458999999999999999999999665 66664
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-36 Score=252.86 Aligned_cols=283 Identities=16% Similarity=0.199 Sum_probs=244.7
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+|..+|+.+-|+|+-..+++++.|++|++||..+++. ...++||.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------------e~~LrGHt------ 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------------ERSLRGHT------ 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------------hhhhhccc------
Confidence 456888999999999999999999999999999998875 48899999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+++..|+| ...|+++++++.|-.+++||..+..
T Consensus 151 ------~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~--------------------------------------- 183 (406)
T KOG0295|consen 151 ------DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF--------------------------------------- 183 (406)
T ss_pred ------cceeEEEE--ecCccEEEecCCccchhheeHHHHH---------------------------------------
Confidence 88999999 5779999999999999999998741
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
++.+. +.+|...|.++.|-|.|.+|+++ .|.+|+.|++. .+.++. ++.+|...|..+..+.||
T Consensus 184 ------~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~-------t~~~h~ewvr~v~v~~DG- 247 (406)
T KOG0295|consen 184 ------RCIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVK-------TFPGHSEWVRMVRVNQDG- 247 (406)
T ss_pred ------HHHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEE-------eccCchHhEEEEEecCCe-
Confidence 12222 37999999999999999999999 99999999999 455665 368999999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---------------CCEEEEE
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------------GQHLLSR 331 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---------------~~~l~s~ 331 (487)
.++++++.|.+|++|-+.+++.. ..+.. |+-+|.+++|-|. +++++++
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k----~~lR~-------------hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCK----AELRE-------------HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred eEEEecCCCceEEEEEeccchhh----hhhhc-------------cccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 99999999999999999987533 34444 5778899988653 3588888
Q ss_pred e-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368 332 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 410 (487)
Q Consensus 332 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 410 (487)
+ |++|++||+.+ +.++.++.+|.+++ .+++|+|.|+||+++.+|+++++||++++ .+.+++.
T Consensus 311 SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ 373 (406)
T KOG0295|consen 311 SRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE 373 (406)
T ss_pred cccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence 6 69999999998 99999999999976 69999999999999999999999999988 6688999
Q ss_pred ccCCccccceEeeCCccccccccceeeecccce-ecCC
Q 011368 411 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 447 (487)
Q Consensus 411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~ 447 (487)
+|..-++.+.|....+ + +++|+-|.. ++|.
T Consensus 374 ah~hfvt~lDfh~~~p--~-----VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAP--Y-----VVTGSVDQTVKVWE 404 (406)
T ss_pred CCcceeEEEecCCCCc--e-----EEeccccceeeeee
Confidence 9999999999987533 4 789998888 8883
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=234.05 Aligned_cols=294 Identities=16% Similarity=0.312 Sum_probs=222.9
Q ss_pred cccccCcEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-cCCCcccc
Q 011368 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD 105 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~ 105 (487)
...|.+.|..++|+|- |..||+|+.|..|+||+...+. ++.+...+ .+|+
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk---- 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK---- 61 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch----
Confidence 3458889999999998 8999999999999999987532 33344444 3577
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|.+++| +|.|++|++|+.|.++.||.-..++....
T Consensus 62 --------rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv--------------------------------- 98 (312)
T KOG0645|consen 62 --------RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECV--------------------------------- 98 (312)
T ss_pred --------heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEE---------------------------------
Confidence 88999999 67899999999999999998877765543
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
.+ +.+|...|.|++|+++|++||+| +|+.|-||.+. .+..+... ..+++|...|..+.|+|.
T Consensus 99 -----------~~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~----aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 99 -----------AT-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECI----AVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred -----------ee-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEE----eeeccccccccEEEEcCC
Confidence 11 48999999999999999999999 99999999998 44444432 357899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 343 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~ 343 (487)
. .+|++++.|++|++|+-..+.-. .....+.+ |.+.|.+++|+|.|..|++++| ++++||...+
T Consensus 162 ~-dlL~S~SYDnTIk~~~~~~dddW-~c~~tl~g-------------~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 162 E-DLLFSCSYDNTIKVYRDEDDDDW-ECVQTLDG-------------HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred c-ceeEEeccCCeEEEEeecCCCCe-eEEEEecC-------------ccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 8 99999999999999987732211 11244455 5789999999999999999975 9999999753
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
.- -..|...+ ..++|. ...|++++.|+.|++|.-...-. ++...+
T Consensus 227 -~~----~~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d---------~p~~~l---- 271 (312)
T KOG0645|consen 227 -DL----SGMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSPD---------EPSWNL---- 271 (312)
T ss_pred -Cc----chhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCCC---------CchHHH----
Confidence 11 01222222 478887 45799999999999998763311 111111
Q ss_pred CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCC-CCEEEEecCCe-EEEEe
Q 011368 424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANGNS-LFFHY 486 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd-~~~la~~s~~~-~~i~~ 486 (487)
....-..|+..|++++|+|. .+.|+++++|+ +.+|.
T Consensus 272 ---------------------------~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 272 ---------------------------LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred ---------------------------HHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 11122356678999999995 57888888777 55664
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=254.73 Aligned_cols=287 Identities=17% Similarity=0.295 Sum_probs=240.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|++.|+-+.||++|+|||+++.|.+..||++.... .++...++.+|.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------~~kl~~tlvgh~-------- 269 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------HFKLKKTLVGHS-------- 269 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------ceeeeeeeeccc--------
Confidence 489999999999999999999999999999986543 356788999999
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.+|..+.| +||+++|++|+.|..+.+||+.+|.....
T Consensus 270 ----~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~------------------------------------- 306 (519)
T KOG0293|consen 270 ----QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHL------------------------------------- 306 (519)
T ss_pred ----CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhh-------------------------------------
Confidence 99999999 68999999999999999999999975543
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC-CcEEEEEEecCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCN 267 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~ 267 (487)
+-.++...+.+++|.|||..+++| .|++|..||++. . ... ..++.. ..|.+++..++| +
T Consensus 307 ---------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n-~~~-------~W~gvr~~~v~dlait~Dg-k 367 (519)
T KOG0293|consen 307 ---------YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-N-ILG-------NWEGVRDPKVHDLAITYDG-K 367 (519)
T ss_pred ---------cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-c-hhh-------cccccccceeEEEEEcCCC-c
Confidence 224566889999999999999999 999999999983 2 211 122222 458999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~ 346 (487)
++++.+.|..|++++.++.... ..... ..+|++...|.||+++++. .+..+++||++ +.+
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~ 428 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENK 428 (519)
T ss_pred EEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhh
Confidence 9999999999999999875432 23333 4689999999999998887 56999999999 588
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 425 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 425 (487)
.+..+.+|...... ..-||.. +..++++||+|+.|+||+..++ ..+.++.+|...|++++++|.
T Consensus 429 lv~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~- 493 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPA- 493 (519)
T ss_pred HHHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCC-
Confidence 89999998864321 2456654 5689999999999999999988 568999999999999999997
Q ss_pred ccccccccceeeecccce-ecCCCC
Q 011368 426 RARRSSLSNLTRGLYRQA-HENSSS 449 (487)
Q Consensus 426 ~~~~~~~~~l~~g~~~~~-~~w~~~ 449 (487)
+..+ +|+++.|+. ++|...
T Consensus 494 ~p~m-----~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 494 DPEM-----FASASDDGTIRIWGPS 513 (519)
T ss_pred CHHH-----hhccCCCCeEEEecCC
Confidence 5566 899999999 999654
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-35 Score=233.52 Aligned_cols=280 Identities=20% Similarity=0.323 Sum_probs=231.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|.++|.++.|+-||+|.++++.|.+|++|+...+.+ ++++.+|.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l---------------------------iktYsghG-------- 59 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL---------------------------IKTYSGHG-------- 59 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccce---------------------------eeeecCCC--------
Confidence 3688999999999999999999999999999876654 68999999
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|..++. +.|+..|++|+.|+.+.+||+.+|+..+.
T Consensus 60 ----~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr------------------------------------- 96 (307)
T KOG0316|consen 60 ----HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR------------------------------------- 96 (307)
T ss_pred ----ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee-------------------------------------
Confidence 77999998 57888999999999999999999986654
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+.+|.+.|+.++|+.+...+++| .|.++++||.+.... +++ .+......|.++..+. .
T Consensus 97 ----------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ-------ildea~D~V~Si~v~~---h 156 (307)
T KOG0316|consen 97 ----------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ-------ILDEAKDGVSSIDVAE---H 156 (307)
T ss_pred ----------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc-------hhhhhcCceeEEEecc---c
Confidence 48999999999999999999999 999999999985432 232 3456667899998875 5
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
.|++|+.||++|.||++.|++. .-+-+ .+|+++.|++|++..++++ ++++++.|-.+ ++
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~----sDy~g---------------~pit~vs~s~d~nc~La~~l~stlrLlDk~t-Gk 216 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLS----SDYFG---------------HPITSVSFSKDGNCSLASSLDSTLRLLDKET-GK 216 (307)
T ss_pred EEEeeccCCcEEEEEeecceee----hhhcC---------------CcceeEEecCCCCEEEEeeccceeeecccch-hH
Confidence 6999999999999999998754 22233 4899999999999988875 69999999988 99
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
.+..+++|.+...+ ...+++.....+++|++||.+++||+..... ...+..+...
T Consensus 217 lL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~-~sk~~~~~~v----------- 271 (307)
T KOG0316|consen 217 LLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ-ISKLSVVSTV----------- 271 (307)
T ss_pred HHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEecccee-eeeeccCCce-----------
Confidence 99999999875433 3778888888999999999999999987632 2222222111
Q ss_pred cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
.|.+++++|....+.++...+.+.|.
T Consensus 272 ----------------------------------~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 272 ----------------------------------IVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred ----------------------------------eEEeeecccCccceeEecCCceecee
Confidence 36788888888888888877777775
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-35 Score=253.89 Aligned_cols=283 Identities=16% Similarity=0.269 Sum_probs=225.8
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
....+..|++++|+.+|.+||+|..||.++||+..... +.+|..|+
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------------------------~~tl~~Hk------ 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------------------------ISTLGQHK------ 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------------------------hhhhhccC------
Confidence 33446789999999999999999999999999986654 47788899
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
++|.++.| +..|.+|++++.|+++.+||..++...........+ ..++.+-. +. -++.+ .....+..
T Consensus 277 ------gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-~lDVdW~~-~~-~F~ts--~td~~i~V 343 (524)
T KOG0273|consen 277 ------GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-ALDVDWQS-ND-EFATS--STDGCIHV 343 (524)
T ss_pred ------CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-ccceEEec-Cc-eEeec--CCCceEEE
Confidence 99999999 688999999999999999999988776654332222 00111111 11 11111 11222333
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
...+...+..++ .+|.+.|.++.|+|.+.+|++| +|++++||... ...+. +.+.+|...|+.+.|+|.|+
T Consensus 344 ~kv~~~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~-------~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 344 CKVGEDRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSV-------HDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred EEecCCCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcch-------hhhhhhccceeeEeecCCCC
Confidence 344556777777 7799999999999999999999 99999999987 44443 35789999999999999753
Q ss_pred --------CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEE
Q 011368 267 --------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 337 (487)
Q Consensus 267 --------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~ 337 (487)
..+++++.|++|++||+..+..+ ..|.. |..+|.+++|+|+|+|+++|+ ||.|.
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~k-------------H~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMK-------------HQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCcee----Eeecc-------------CCCceEEEEecCCCcEEEecCCCCeeE
Confidence 58999999999999999998765 56655 488999999999999999997 69999
Q ss_pred EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+|+.++ ++.++.+.+.... +.++|+.+|.+|..+-.|+.+.+-|++
T Consensus 478 iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 478 IWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999998 8888888876642 599999999999999999999999875
No 26
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=248.46 Aligned_cols=253 Identities=18% Similarity=0.306 Sum_probs=219.2
Q ss_pred hhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcc
Q 011368 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (487)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (487)
.+|++...+. .|.+-|.|+++.|.++++++|+.|++|+|||+.+++.
T Consensus 139 apwKl~rVi~--------gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L------------------------- 185 (460)
T KOG0285|consen 139 APWKLYRVIS--------GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL------------------------- 185 (460)
T ss_pred Ccceehhhhh--------hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-------------------------
Confidence 4466665544 5899999999999999999999999999999999876
Q ss_pred eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (487)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (487)
..++.||- ..|..++++ +--.|+++++.|+.|+.||+...+.++.
T Consensus 186 --kltltGhi------------~~vr~vavS--~rHpYlFs~gedk~VKCwDLe~nkvIR~------------------- 230 (460)
T KOG0285|consen 186 --KLTLTGHI------------ETVRGVAVS--KRHPYLFSAGEDKQVKCWDLEYNKVIRH------------------- 230 (460)
T ss_pred --EEeecchh------------heeeeeeec--ccCceEEEecCCCeeEEEechhhhhHHH-------------------
Confidence 58899998 889999994 5667999999999999999998875543
Q ss_pred ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368 172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 250 (487)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 250 (487)
| .+|-+.|+|++..|.-..|++| .|.++++||+++..... .+.
T Consensus 231 ---------------------------Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~--------~l~ 274 (460)
T KOG0285|consen 231 ---------------------------Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH--------VLS 274 (460)
T ss_pred ---------------------------h-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEE--------Eec
Confidence 2 7999999999999999999999 99999999999654432 468
Q ss_pred CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
+|...|.++.+.|.. ..+++|+.|++|++||++.++.. .++.. |...|.+++.+|....+++
T Consensus 275 GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tlt~-------------hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITLTH-------------HKKSVRALCLHPKENLFAS 336 (460)
T ss_pred CCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eeeec-------------ccceeeEEecCCchhhhhc
Confidence 999999999999988 78999999999999999998744 34444 5789999999999988888
Q ss_pred EeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 331 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 331 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
++-..|+-|++.. +..+..+.+|...+ .+++...|| ++++|+++|.+.+||.+++.
T Consensus 337 as~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 337 ASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEEEEEecCcCc
Confidence 8878999999986 88888899998765 588888776 78899999999999999874
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=259.60 Aligned_cols=373 Identities=13% Similarity=0.161 Sum_probs=274.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
-..+|.|+.|||+|+++|.|.. +.+.||....... ...+++...+++.+|-
T Consensus 95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~-------------------~~~~pFvl~r~~~g~f--------- 145 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIK-------------------NEFNPFVLHRTYLGHF--------- 145 (893)
T ss_pred ecCccceEEECCCCcEEEEEec-ceeEEEecCcchh-------------------cccCcceEeeeecCCc---------
Confidence 4678999999999999998864 6899999765432 0245777888999998
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCC-Cceeeeecccc---------ccccccccCCC
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF-PFVSSENTLLA---------EKNFMNEHNPP 180 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~ 180 (487)
..|.++.| +.|.++|++|+.|.++++|.++..+-......+.. ..+...-|... +|.++.-....
T Consensus 146 ---ddi~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~ 220 (893)
T KOG0291|consen 146 ---DDITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDL 220 (893)
T ss_pred ---cceeEEEe--ccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecC
Confidence 88999999 68899999999999999999987654333322222 22222222222 22222211110
Q ss_pred Ccceeee----------eeee--c---------cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCce
Q 011368 181 SFAHGYH----------LEWT--E---------NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 238 (487)
Q Consensus 181 ~~~~~~~----------~~~~--~---------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~ 238 (487)
.+..... ...+ . ....+.++......|++.+|++..+.|++| ..|...+|.+. .-.+
T Consensus 221 ~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP-~f~l 299 (893)
T KOG0291|consen 221 RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP-DFNL 299 (893)
T ss_pred CCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC-CceE
Confidence 0000000 0000 0 111233445556889999999999999999 99999999998 4444
Q ss_pred eEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-CeEEEEEccCCccccccceeecccccccCcccccccccccee
Q 011368 239 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 317 (487)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 317 (487)
+..+ .-....|..++|+..| .+||.|+.. |.+.+|+.++.. .+++. .+|...++
T Consensus 300 ih~L-------Sis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs------YVlKQ-----------QgH~~~i~ 354 (893)
T KOG0291|consen 300 IHSL-------SISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES------YVLKQ-----------QGHSDRIT 354 (893)
T ss_pred EEEe-------ecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc------eeeec-----------ccccccee
Confidence 4332 2234568999999999 999999875 899999998865 34443 45688999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEE
Q 011368 318 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 396 (487)
Q Consensus 318 ~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~i 396 (487)
+++++|||+++++|. ||.|+|||..+ +-++.++..|...+ +.++|+..|+.|++.+-||+|+.
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~V---------------t~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGV---------------TAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCce---------------EEEEEEecCCEEEEeecCCeEEe
Confidence 999999999999985 69999999987 88999999999865 69999999999999999999999
Q ss_pred EEeCCCCceeEEEeccCCc-cccceEeeCCccccccccceeeecccce--ecC--CCCCccccccccCCCeEEEEEcCCC
Q 011368 397 FSHGVGSAGGITVEAGKNE-NRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYNLSSKLLHLAWHPTT 471 (487)
Q Consensus 397 wd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~w--~~~~~~~~~~~~~~~v~~~~~spd~ 471 (487)
||+... ....++...... -.+++.-| .|-+ ++.|+.|.. .+| ++++++..+.+|+++|.+++|+|++
T Consensus 419 wDlkRY-rNfRTft~P~p~QfscvavD~--sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 419 WDLKRY-RNFRTFTSPEPIQFSCVAVDP--SGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred eeeccc-ceeeeecCCCceeeeEEEEcC--CCCE-----EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence 999876 334455443221 22333333 4555 888888888 889 7888999999999999999999999
Q ss_pred CEEEEec-CCeEEEEeC
Q 011368 472 NLIACAN-GNSLFFHYA 487 (487)
Q Consensus 472 ~~la~~s-~~~~~i~~~ 487 (487)
..||++| +..+.+|+.
T Consensus 491 ~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDI 507 (893)
T ss_pred CeEEeccccceEEEEEe
Confidence 9999999 556999973
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.5e-34 Score=240.45 Aligned_cols=331 Identities=12% Similarity=0.083 Sum_probs=264.7
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|++.|.+++.+|+.+++|||+.|..-.||+..+++. ...+.+|+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~---------------------------~~eltgHK------ 106 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF---------------------------AGELTGHK------ 106 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc---------------------------eeEecCCC------
Confidence 456999999999999999999999999999999998864 58899999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|+++.| +.+|.+||||..+|.|+||+..++.....
T Consensus 107 ------DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~----------------------------------- 143 (399)
T KOG0296|consen 107 ------DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWK----------------------------------- 143 (399)
T ss_pred ------CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEE-----------------------------------
Confidence 99999999 68999999999999999999998875543
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+...-..+.-+.|+|-+..|++| .||.+.+|.+.+++. .+ .+.+|+.++++=.|.|+|
T Consensus 144 ------------~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~k-------v~~Gh~~~ct~G~f~pdG- 202 (399)
T KOG0296|consen 144 ------------LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CK-------VMSGHNSPCTCGEFIPDG- 202 (399)
T ss_pred ------------eecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-ee-------EecCCCCCcccccccCCC-
Confidence 13455678889999999999999 999999999995433 33 257999999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
+.++++..||+|++|++.++..+ ..+... + .....++.++.++..++.|+ ++.+++-...+ +
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~~-e-----------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s-g 265 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQPL----HKITQA-E-----------GLELPCISLNLAGSTLTKGNSEGVACGVNNGS-G 265 (399)
T ss_pred ceEEEEecCceEEEEecCCCcee----EEeccc-c-----------cCcCCccccccccceeEeccCCccEEEEcccc-c
Confidence 99999999999999999998754 333320 0 13567788888888888885 48888887766 6
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 425 (487)
+.+....+.. +...........++ -.+.++..=.+.|+|+-||+|.|||+... .....-.|...|.++.|.+
T Consensus 266 KVv~~~n~~~-~~l~~~~e~~~esv---e~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-- 337 (399)
T KOG0296|consen 266 KVVNCNNGTV-PELKPSQEELDESV---ESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-- 337 (399)
T ss_pred eEEEecCCCC-ccccccchhhhhhh---hhcccccccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC--
Confidence 6665555311 00000000111122 25666667778899999999999999865 4556667888899999987
Q ss_pred ccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 426 RARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 426 ~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
..+ |.++..++. +.| ++++++..+.+|...|.+++.+|++++++++|+|+ ..||.
T Consensus 338 -t~~-----l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 338 -TDY-----LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred -cch-----heeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 233 899999999 999 78899999999999999999999999999999766 66664
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=260.09 Aligned_cols=267 Identities=17% Similarity=0.211 Sum_probs=224.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|++.|.++.|+|...+++++-.+|.|.||+.++... ++++.-..
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm---------------------------VksfeV~~------ 55 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM---------------------------VKSFEVSE------ 55 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------eeeeeecc------
Confidence 344788999999999999999999999999999987754 45565555
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.+|.+..|. ...+++++|+.|..|++|+..+++....
T Consensus 56 ------~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV~~----------------------------------- 92 (794)
T KOG0276|consen 56 ------VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKVKT----------------------------------- 92 (794)
T ss_pred ------cchhhheee--eccceEEEecCCceEEEEecccceeeEE-----------------------------------
Confidence 789999996 4567999999999999999999876554
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+..|.+-|++++.+|...++.++ +|-+|++||.+..-.+.+ ++++|...|++++|+|..+
T Consensus 93 ------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q-------tfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 93 ------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ-------TFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred ------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee-------EEcCcceEEEEEEecCCCc
Confidence 48999999999999999999999 999999999996555544 4799999999999999888
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEEEeC-CeEEEEeCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDY-MNLKLWDIRM 343 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~~d-~~i~iwd~~~ 343 (487)
+.+++++-|++|++|.+.+.... .++++ |+..|+++.+-+-| .||++|+| ..|+|||.++
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~n----fTl~g-------------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPN----FTLEG-------------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCc----eeeec-------------cccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 99999999999999999886543 45555 58999999998754 59999865 9999999998
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
..++.++.+|...+ ..++|+|.=..|++|+.||+++||+..+-+ ...++....+.+++++..+
T Consensus 217 -k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty~-lE~tLn~gleRvW~I~~~k 279 (794)
T KOG0276|consen 217 -KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTYK-LEKTLNYGLERVWCIAAHK 279 (794)
T ss_pred -HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCccee-hhhhhhcCCceEEEEeecC
Confidence 99999999999866 589999999999999999999999988753 2444444555555555443
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-33 Score=269.89 Aligned_cols=289 Identities=25% Similarity=0.455 Sum_probs=231.3
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|...|.|+.|+++|+++++++.|+.+++|+..+.+. .....+.+|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~--------- 203 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT--------- 203 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence 367899999999999999999999999999865540 1235567888
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcc-ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|.+++| +++++++++++.|++|++||+. .+...+.
T Consensus 204 ---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~~------------------------------------- 241 (456)
T KOG0266|consen 204 ---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLKT------------------------------------- 241 (456)
T ss_pred ---cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEEE-------------------------------------
Confidence 88999999 6889999999999999999994 3344333
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.+|...|++++|+|+++++++| .|++|++||+++ +.+.. .+.+|...|.+++|++++ .+
T Consensus 242 ----------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~-------~l~~hs~~is~~~f~~d~-~~ 302 (456)
T KOG0266|consen 242 ----------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVR-------KLKGHSDGISGLAFSPDG-NL 302 (456)
T ss_pred ----------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEE-------eeeccCCceEEEEECCCC-CE
Confidence 37999999999999999999999 999999999995 55554 368999999999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
|++++.|+.|++||+.++... ..+.+..+. ... .++.+.|+|++++++++. |+.+++||+.. ...
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~----------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~-~~~ 368 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKL--CLKLLSGAE----------NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRS-GKS 368 (456)
T ss_pred EEEcCCCccEEEEECCCCcee--eeecccCCC----------CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccC-Ccc
Confidence 999999999999999998731 113444420 012 589999999999999986 58999999987 888
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 427 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 427 (487)
...+.+|.... -++ .+...+++++++++|+.|+.|++|++.++ .....+.+|.
T Consensus 369 ~~~~~~~~~~~---------~~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~-------------- 421 (456)
T KOG0266|consen 369 VGTYTGHSNLV---------RCI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHS-------------- 421 (456)
T ss_pred eeeecccCCcc---------eeE---ecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCC--------------
Confidence 88888887642 022 36667889999999999999999999986 3233333331
Q ss_pred ccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec---CCeEEEEe
Q 011368 428 RRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFHY 486 (487)
Q Consensus 428 ~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s---~~~~~i~~ 486 (487)
...|..++|+|..+++++++ +..+.+|.
T Consensus 422 -------------------------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 422 -------------------------------KAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred -------------------------------CCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 34667788888888888887 33366664
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=259.38 Aligned_cols=387 Identities=16% Similarity=0.185 Sum_probs=282.3
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
..-+|..+|+++.|+..|..||+|+.|+.|.+||+-...- ...++||.
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G---------------------------l~rL~GHk----- 149 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG---------------------------LFRLRGHK----- 149 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCCccEEEEEecccee---------------------------eEEeecch-----
Confidence 3456999999999999999999999999999999865532 46789999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC--------------------CCCceeeeec
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD--------------------HFPFVSSENT 166 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------------~~~~~~~~~~ 166 (487)
+.|+..-|. .+.+++++.+.|+.|++||+.+..+....... ....+..+++
T Consensus 150 -------d~iT~~~F~--~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 150 -------DSITQALFL--NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAF 220 (888)
T ss_pred -------HHHhHHhcc--CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeec
Confidence 889999884 55789999999999999999876554332100 0011111111
Q ss_pred cc-------------------------------cccccccccCCCCcceeeee---------------------------
Q 011368 167 LL-------------------------------AEKNFMNEHNPPSFAHGYHL--------------------------- 188 (487)
Q Consensus 167 ~~-------------------------------~~~~~~~~~~~~~~~~~~~~--------------------------- 188 (487)
.. .+..+++..+.+........
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 10 11111111110000000000
Q ss_pred ----------------------------------------------eeec--------cceee---eecccCCCceeEEE
Q 011368 189 ----------------------------------------------EWTE--------NMATK---VYPHAHDFNINSIS 211 (487)
Q Consensus 189 ----------------------------------------------~~~~--------~~~~~---~~~~~~~~~v~~i~ 211 (487)
.|.. .++.+ .-+.+|...|++++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 0100 01111 12478999999999
Q ss_pred eCCCCCEEEEecCCeEEEEEccCCCceeEEe-----------------------------ecC----CCCCCCCCCcEEE
Q 011368 212 NNSDCETFVSADDLRINLWNLEISDQCFNIV-----------------------------DMK----PSNMDDLTEVITS 258 (487)
Q Consensus 212 ~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~----~~~~~~~~~~v~~ 258 (487)
++.+...+++|..+.|++|+..+ .++++++ ++. ..+.++|.+.|++
T Consensus 381 vS~d~~~~~Sga~~SikiWn~~t-~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWs 459 (888)
T KOG0306|consen 381 VSSDSILLASGAGESIKIWNRDT-LKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWS 459 (888)
T ss_pred eecCceeeeecCCCcEEEEEccC-cceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceee
Confidence 99998888888889999999984 3444433 110 1234679999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEccCCcccc-ccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeE
Q 011368 259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL 336 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i 336 (487)
++.+|++ ..+++|+.|.+|++||+.--.... ...+.+..|. ...-..+..|.++.+||||++|+.+ -|+++
T Consensus 460 i~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTV 532 (888)
T KOG0306|consen 460 ISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTV 532 (888)
T ss_pred eeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeecc------ceEEeccccEEEEEEcCCCcEEEEEeccCeE
Confidence 9999999 999999999999999986421100 0001111100 0001125689999999999999998 47999
Q ss_pred EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
+||-+.+ -+..-.+-+|.-++ .++.+|||++.++|||.|..|+||-+.-| .+...+-+|.+.|
T Consensus 533 kVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSv 595 (888)
T KOG0306|consen 533 KVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSV 595 (888)
T ss_pred EEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCce
Confidence 9999987 78888888999876 69999999999999999999999999887 6788999999999
Q ss_pred ccceEeeCCccccccccceeeecccce-ecCCC--CCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEe
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 486 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~ 486 (487)
..+.|.| +... +.+++.|+. +-|+. -+.+..+.+|...|.+++.+|+|.+++++|.| .+.+|.
T Consensus 596 m~V~F~P--~~~~-----FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 596 MSVQFLP--KTHL-----FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred eEEEEcc--ccee-----EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999 5555 899999999 99943 45667788999999999999999999999964 588885
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=256.50 Aligned_cols=372 Identities=16% Similarity=0.148 Sum_probs=280.6
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC-CCcccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKS 109 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~ 109 (487)
..+.+++++.+||+++|++++..+.+++|++.+++. ++++++ |+
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~---------------------------irswKa~He-------- 105 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL---------------------------IRSWKAIHE-------- 105 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEcccchH---------------------------hHhHhhccC--------
Confidence 356799999999999999999999999999998865 467777 87
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc-cccccCCCCcceeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPPSFAHGYHL 188 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 188 (487)
++|..++| .|.+.++++|+.|+.+++||+..+.+....+. +...++.+.|++.... ++.++..+....
T Consensus 106 ----~Pvi~ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~gGvVssl~F~~~~~~~lL~sg~~D~~v~---- 174 (775)
T KOG0319|consen 106 ----APVITMAF--DPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-HGGVVSSLLFHPHWNRWLLASGATDGTVR---- 174 (775)
T ss_pred ----CCeEEEEE--cCCCceEEeccccceEEEEEeeCCEEEEEecC-CCceEEEEEeCCccchhheeecCCCceEE----
Confidence 99999999 56788999999999999999998877665433 2334666666654443 344444333322
Q ss_pred eeecc---ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEe----------------------
Q 011368 189 EWTEN---MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV---------------------- 242 (487)
Q Consensus 189 ~~~~~---~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~---------------------- 242 (487)
.|+.. .+..+ +..|.+.|+++++++|+..++++ +|..|.+||+...+ ...++
T Consensus 175 vwnl~~~~tcl~~-~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~-~l~~lp~ye~~E~vv~l~~~~~~~~~~ 252 (775)
T KOG0319|consen 175 VWNLNDKRTCLHT-MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK-KLKTLPLYESLESVVRLREELGGKGEY 252 (775)
T ss_pred EEEcccCchHHHH-HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhh-hhheechhhheeeEEEechhcCCcceE
Confidence 24332 12333 48899999999999999988887 99999999986311 11000
Q ss_pred --------------------------------------------------------------------------------
Q 011368 243 -------------------------------------------------------------------------------- 242 (487)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (487)
T Consensus 253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l 332 (775)
T KOG0319|consen 253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL 332 (775)
T ss_pred EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence
Q ss_pred ----------------------ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccc
Q 011368 243 ----------------------DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 300 (487)
Q Consensus 243 ----------------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 300 (487)
.....-+.+|...|.+++...+| .+|++|+.|.++++|.++++......+...
T Consensus 333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~---- 407 (775)
T KOG0319|consen 333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQA---- 407 (775)
T ss_pred CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhh----
Confidence 00001235788888888866677 899999999999999885543221112222
Q ss_pred cccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEEEeCCCCC--ceee------eeecccccccccccccCCCCc
Q 011368 301 ESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMDS--TPVA------TFKIHEHLRPKLCDLYNNDSI 370 (487)
Q Consensus 301 ~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~iwd~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~ 370 (487)
.+|.+.|.+++++..+. ++++++ |+++++|++.... .... ....|..
T Consensus 408 ---------~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-------------- 464 (775)
T KOG0319|consen 408 ---------NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK-------------- 464 (775)
T ss_pred ---------cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc--------------
Confidence 45789999999987654 666764 7999999997511 1111 2233443
Q ss_pred ceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC
Q 011368 371 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 449 (487)
Q Consensus 371 ~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~ 449 (487)
+|++++++|+.++|||||.|.+.+||+++.. ....++.+|+.-+.++.|++ ..+. +++++.|.. ++|+..
T Consensus 465 -dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~--~dq~-----laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 465 -DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSK--NDQL-----LATCSGDKTVKIWSIS 535 (775)
T ss_pred -cccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEecc--ccce-----eEeccCCceEEEEEec
Confidence 2369999999999999999999999999955 67899999999999999998 4555 999999999 999544
Q ss_pred --CccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 450 --GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 450 --~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
.-+.++.+|+..|..+.|-.+|+.|++++.|| +.+|+.
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 44566779999999999999999999999887 788973
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.1e-32 Score=247.08 Aligned_cols=280 Identities=23% Similarity=0.425 Sum_probs=226.3
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|.++|++++|+|++++|++++.||.|++|++.+++. ...+.+|.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------------~~~~~~~~-------- 51 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------------LRTLKGHT-------- 51 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------------EEEEecCC--------
Confidence 5889999999999999999999999999999987643 35677787
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..+..+.| .++++++++++.|+.|++|++.+++....
T Consensus 52 ----~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~------------------------------------- 88 (289)
T cd00200 52 ----GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVRT------------------------------------- 88 (289)
T ss_pred ----cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEE-------------------------------------
Confidence 77889999 46778999999999999999987643322
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+..|...+.++.|++++++++++ .++.|.+||+.+.. .... +..|...+.++.|+|++ .+
T Consensus 89 ----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~-------~~~~~~~i~~~~~~~~~-~~ 149 (289)
T cd00200 89 ----------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTT-------LRGHTDWVNSVAFSPDG-TF 149 (289)
T ss_pred ----------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEE-------eccCCCcEEEEEEcCcC-CE
Confidence 25778899999999999999998 69999999998433 3322 34688889999999997 88
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
+++++.++.|++||+++++.. ..+.. |...+.++.|+|+++.+++++ ++.|++||++. +..
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~ 211 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCV----ATLTG-------------HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKC 211 (289)
T ss_pred EEEEcCCCcEEEEEccccccc----eeEec-------------CccccceEEECCCcCEEEEecCCCcEEEEECCC-Cce
Confidence 888888999999999876544 44444 356899999999998888775 69999999986 777
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 427 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 427 (487)
+..+..+...+ .+++|+|++.++++++.||.|++|++.+++. ...+.
T Consensus 212 ~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~----------------- 258 (289)
T cd00200 212 LGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-VQTLS----------------- 258 (289)
T ss_pred ecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-EEEcc-----------------
Confidence 77776666533 5899999999999888899999999986522 22121
Q ss_pred ccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 428 RRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 428 ~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
.|...|.+++|+|+++.|++++.|+ +.+|.
T Consensus 259 -----------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 259 -----------------------------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -----------------------------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 3334788999999999999888664 77774
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-34 Score=266.98 Aligned_cols=266 Identities=16% Similarity=0.228 Sum_probs=215.1
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc-eeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 192 (487)
..++|..| ++++.+||.|-.|..|++|.+...+++.++....-... ...... ......-+.
T Consensus 379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~----------------d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI----------------DTESADVDVDMLDDDS 440 (707)
T ss_pred CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhccc----------------cccccchhhhhccccC
Confidence 67899999 68888999999999999999987655444321110000 000000 000011111
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
....+. +.+|.++|+..+|+|+.++|++| .|+++++|.+.+... ... ..+|..+|+.+.|+|.| .++|+
T Consensus 441 ~~~~~~-L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-~V~-------y~GH~~PVwdV~F~P~G-yYFat 510 (707)
T KOG0263|consen 441 SGTSRT-LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-LVI-------YKGHLAPVWDVQFAPRG-YYFAT 510 (707)
T ss_pred CceeEE-eecCCCceeeeeecccccceeeccCCcceeeeeccccee-EEE-------ecCCCcceeeEEecCCc-eEEEe
Confidence 222333 48999999999999999999999 999999999995543 332 47999999999999999 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
++.|++-++|........ ++|.+| -+.|.|+.|+|++.|+++|+ |.++|+||+.+ +..++.
T Consensus 511 as~D~tArLWs~d~~~Pl----Rifagh-------------lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRi 572 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPL----RIFAGH-------------LSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRI 572 (707)
T ss_pred cCCCceeeeeecccCCch----hhhccc-------------ccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEE
Confidence 999999999998875544 677764 78999999999999999996 69999999997 999999
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccc
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 430 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 430 (487)
|.+|..++ ++++|||+|++|++|+.||.|.+||+.++ ..+..+.+|.+.+.++.|+. ++.+
T Consensus 573 F~GH~~~V---------------~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~--dg~v- 633 (707)
T KOG0263|consen 573 FTGHKGPV---------------TALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSR--DGNV- 633 (707)
T ss_pred ecCCCCce---------------EEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEec--CCCE-
Confidence 99999876 69999999999999999999999999988 55888999999999999987 7888
Q ss_pred cccceeeecccce-ecCCC
Q 011368 431 SLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 431 ~~~~l~~g~~~~~-~~w~~ 448 (487)
|++|+.|.. ++|+.
T Consensus 634 ----Lasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 634 ----LASGGADNSVRLWDL 648 (707)
T ss_pred ----EEecCCCCeEEEEEc
Confidence 999999999 99943
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.2e-35 Score=245.37 Aligned_cols=234 Identities=13% Similarity=0.277 Sum_probs=199.1
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
..+.|+|+++. ...+++|..|++|+|||.++.++ ...+.||+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c---------------------------~~~L~GHt--------- 237 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLEC---------------------------LKILTGHT--------- 237 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHH---------------------------HHhhhcCC---------
Confidence 46789999985 45789999999999999876554 57899999
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+.|.|+.| +.+.+++|+.|.+|++||++++++...
T Consensus 238 ---GSVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t-------------------------------------- 272 (499)
T KOG0281|consen 238 ---GSVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT-------------------------------------- 272 (499)
T ss_pred ---CcEEeeec----cceEEEecCCCceEEEEeccCCchhhH--------------------------------------
Confidence 99999999 356999999999999999999986654
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
+..|...|..+.|+ ..+++++ .|.+|.+||+..+... .+ .+.+.+|...|..+.|+. ++|
T Consensus 273 ---------lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i-t~----rrVLvGHrAaVNvVdfd~---kyI 333 (499)
T KOG0281|consen 273 ---------LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI-TL----RRVLVGHRAAVNVVDFDD---KYI 333 (499)
T ss_pred ---------HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH-HH----HHHHhhhhhheeeecccc---ceE
Confidence 37899999999998 4688888 9999999999865421 11 135679999999999974 699
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
++++.|++|++|++.+.+.+ +++.+| ...|.|+.+. |+++++|+ |.+|++||+.. +.++
T Consensus 334 VsASgDRTikvW~~st~efv----Rtl~gH-------------kRGIAClQYr--~rlvVSGSSDntIRlwdi~~-G~cL 393 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFV----RTLNGH-------------KRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GACL 393 (499)
T ss_pred EEecCCceEEEEeccceeee----hhhhcc-------------cccceehhcc--CeEEEecCCCceEEEEeccc-cHHH
Confidence 99999999999999998766 777774 7788888875 88999985 69999999997 9999
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
+.+.+|+..+ .++.| |.+.|++|+.||+|+|||+.++.
T Consensus 394 RvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 394 RVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred HHHhchHHhh---------------hheee--cCceeeeccccceEEEEeccccc
Confidence 9999999876 57888 57789999999999999998873
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-31 Score=237.75 Aligned_cols=334 Identities=16% Similarity=0.225 Sum_probs=257.0
Q ss_pred CCCCccccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC
Q 011368 23 RNPDEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (487)
Q Consensus 23 ~~~~~~~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (487)
...++..+|...|++++|-|... ++++|+.|++|.+|+ .|++++..+++.|.
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe---------------------------GPPFKFk~s~r~Hs 190 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE---------------------------GPPFKFKSSFREHS 190 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee---------------------------CCCeeeeecccccc
Confidence 44677888999999999999875 589999999999998 56999999999999
Q ss_pred cccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 102 ~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
.-|++++| +|||.+|++++.||.+.+||-.+++.......
T Consensus 191 ------------kFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~-------------------------- 230 (603)
T KOG0318|consen 191 ------------KFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELED-------------------------- 230 (603)
T ss_pred ------------cceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecC--------------------------
Confidence 88999999 68999999999999999999999887655321
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEe------------------
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV------------------ 242 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~------------------ 242 (487)
-.+|.+.|.+++|+||++.++++ .|.+++|||+.+.. +.+.+
T Consensus 231 ------------------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 231 ------------------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred ------------------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc-eEEEeecCCchhceEEEEEEeCC
Confidence 15899999999999999999999 99999999998542 22222
Q ss_pred ------------------ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccC
Q 011368 243 ------------------DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 304 (487)
Q Consensus 243 ------------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~ 304 (487)
...+..+.+|+..|+++..+|++ ++|++|+.||.|.-||..++... +.. +
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~----~~~-g------ 359 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSD----RLA-G------ 359 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCcccc----ccc-c------
Confidence 11234567899999999999999 99999999999999999987632 221 1
Q ss_pred ccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCce-eeeeecccccccccccccCCCCcceeeEEEEcCCCC
Q 011368 305 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 383 (487)
Q Consensus 305 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 383 (487)
..|...|.+++-+..+.++.+|-|.++++.++...+-. ...++....+ ..++..+++.
T Consensus 360 -----~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP----------------~~lav~~d~~ 418 (603)
T KOG0318|consen 360 -----KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP----------------KGLAVLSDGG 418 (603)
T ss_pred -----ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCc----------------eeEEEcCCCC
Confidence 34688999999998888888888899999998642111 1112222222 2788888887
Q ss_pred EEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCC----cccccccc
Q 011368 384 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHELSYNL 458 (487)
Q Consensus 384 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~----~~~~~~~~ 458 (487)
.++..+.++.+.+=+.. + ..++. -.-...+++++| ++.. .+.|+.|+. ++++..+ .......|
T Consensus 419 ~avv~~~~~iv~l~~~~-~---~~~~~-~~y~~s~vAv~~--~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h 486 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQT-K---VSSIP-IGYESSAVAVSP--DGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEH 486 (603)
T ss_pred EEEEEecCcEEEEecCC-c---ceeec-cccccceEEEcC--CCCE-----EEEecccceEEEEEecCCcccceeeeecc
Confidence 77777766554443333 2 11111 122334777777 5555 899999999 9984332 23356789
Q ss_pred CCCeEEEEEcCCCCEEEEecCC-eEEEEeC
Q 011368 459 SSKLLHLAWHPTTNLIACANGN-SLFFHYA 487 (487)
Q Consensus 459 ~~~v~~~~~spd~~~la~~s~~-~~~i~~~ 487 (487)
..+|+.+++|||+.+||++... .+.+|++
T Consensus 487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~ 516 (603)
T KOG0318|consen 487 RAAITDVAYSPDGAYLAAGDASRKVVLYDV 516 (603)
T ss_pred cCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence 9999999999999999999855 4777863
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.5e-32 Score=276.98 Aligned_cols=304 Identities=20% Similarity=0.291 Sum_probs=223.0
Q ss_pred CccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
+....|.+.|.+++|+|+|++||+|+.|+.|+||+....... .. . .......+.+ .
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~------~~------------~-~~~~~~~~~~-~---- 532 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD------GR------------D-IHYPVVELAS-R---- 532 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc------cc------------c-cccceEEecc-c----
Confidence 345668999999999999999999999999999997542110 00 0 0001122222 2
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|.+++|++ +++.+|++++.|++|++||+.+++....
T Consensus 533 --------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~--------------------------------- 570 (793)
T PLN00181 533 --------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTE--------------------------------- 570 (793)
T ss_pred --------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------
Confidence 6689999974 4578999999999999999987764433
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
+.+|...|++++|+| ++.+|++| .|+.|++||+++. .....+ . +...+.++.|++
T Consensus 571 --------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~-------~-~~~~v~~v~~~~ 627 (793)
T PLN00181 571 --------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTI-------K-TKANICCVQFPS 627 (793)
T ss_pred --------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEE-------e-cCCCeEEEEEeC
Confidence 378999999999997 78899999 9999999999844 444332 2 235689999965
Q ss_pred -CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368 264 -IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 341 (487)
Q Consensus 264 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~ 341 (487)
++ .+|++|+.||.|++||+++.... ...+.+ |...|.++.|. ++.+|++++ |+.|++||+
T Consensus 628 ~~g-~~latgs~dg~I~iwD~~~~~~~---~~~~~~-------------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 628 ESG-RSLAFGSADHKVYYYDLRNPKLP---LCTMIG-------------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred CCC-CEEEEEeCCCeEEEEECCCCCcc---ceEecC-------------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 56 99999999999999999875421 133344 57899999997 677888775 699999999
Q ss_pred CCC-----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe-ccCCc
Q 011368 342 RMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNE 415 (487)
Q Consensus 342 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~~ 415 (487)
+.. ..++..+.+|...+ ..++|+|++.+|++|+.|+.|++|+....... ..+. .+...
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~-~s~~~~~~~~ 753 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVFVYHKAFPMPV-LSYKFKTIDP 753 (793)
T ss_pred CCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEEEEECCCCCce-EEEecccCCc
Confidence 742 25677788877644 58999999999999999999999998755221 1110 00000
Q ss_pred cccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 416 NRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
+.. .....+...|.+++|+|++..|++|+.++ +.||.
T Consensus 754 ~~~----------------------------------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 754 VSG----------------------------------LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred ccc----------------------------------cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 000 01123455799999999999999988655 88886
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-33 Score=236.21 Aligned_cols=274 Identities=14% Similarity=0.215 Sum_probs=237.8
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.+|+.+-|+ |+-..+++++.|++|++||..++++...
T Consensus 109 ~~vt~v~~h--p~~~~v~~as~d~tikv~D~~tg~~e~~----------------------------------------- 145 (406)
T KOG0295|consen 109 SSVTRVIFH--PSEALVVSASEDATIKVFDTETGELERS----------------------------------------- 145 (406)
T ss_pred cceeeeeec--cCceEEEEecCCceEEEEEccchhhhhh-----------------------------------------
Confidence 889999996 5667888899999999999999986443
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+.+|.+.+.+++|+..|++++++ .|-.+++||......+.+ .+.+|...|.++.|-|.| .+|+++
T Consensus 146 ------LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-------s~~gh~h~vS~V~f~P~g-d~ilS~ 211 (406)
T KOG0295|consen 146 ------LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-------SLIGHEHGVSSVFFLPLG-DHILSC 211 (406)
T ss_pred ------hhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH-------HhcCcccceeeEEEEecC-Ceeeec
Confidence 58999999999999999999999 998899999986544443 357899999999999999 999999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~ 351 (487)
+.|.+|+.|++.++-.+ ++|.+| ..+|..+..+.||.++++++ |.+|++|-+.+ +.+...+
T Consensus 212 srD~tik~We~~tg~cv----~t~~~h-------------~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~l 273 (406)
T KOG0295|consen 212 SRDNTIKAWECDTGYCV----KTFPGH-------------SEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAEL 273 (406)
T ss_pred ccccceeEEecccceeE----EeccCc-------------hHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhh
Confidence 99999999999999766 777774 77999999999999999986 59999999987 8788888
Q ss_pred ecccccccccccccCCCCcceeeEEEEcC---------------CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 352 KIHEHLRPKLCDLYNNDSIFDKFECSVSG---------------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------------d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
+.|+.++. +++|.| .++++.+++.|++|++||+.++ .++.++.+|.++|
T Consensus 274 R~hEh~vE---------------ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 274 REHEHPVE---------------CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWV 337 (406)
T ss_pred hccccceE---------------EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEeccccee
Confidence 88888763 444433 2369999999999999999999 7799999999999
Q ss_pred ccceEeeCCccccccccceeeecccce-ecCC--CCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEE
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFH 485 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~ 485 (487)
+.++|+| .|++ |++...|+. ++|+ ..+.......|+.-|+.++|+.+..++++|+-| ...+|
T Consensus 338 r~~af~p--~Gky-----i~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 338 RGVAFSP--GGKY-----ILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred eeeEEcC--CCeE-----EEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence 9999999 7888 999999999 9994 445555667899999999999999999999955 47776
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=226.76 Aligned_cols=280 Identities=15% Similarity=0.179 Sum_probs=232.7
Q ss_pred ccccCcEEEEEEcC---CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 29 LQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 29 ~~h~~~V~~~~~s~---~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
.+|+.+|-.++||| +|-+|++++.|+.-.+-+-+++.- +.+|.||.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw---------------------------igtfeghk---- 59 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW---------------------------IGTFEGHK---- 59 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc---------------------------EEeeeccC----
Confidence 45899999999986 889999999999888777666653 68999999
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
++|..... +.+-.+-++++.|-+-++||.-+|..+..
T Consensus 60 --------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs--------------------------------- 96 (334)
T KOG0278|consen 60 --------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS--------------------------------- 96 (334)
T ss_pred --------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh---------------------------------
Confidence 99999988 45666778899999999999988875543
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
..|...|..++|+.|.+.|++| .+..++++|++..... +..+.+|.+.|..+.|...
T Consensus 97 ---------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-------p~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 97 ---------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-------PKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred ---------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-------chhhcCCCCcceeEEEecc
Confidence 4788899999999999999999 9999999999965543 3467899999999999988
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 344 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~ 344 (487)
. +.|++++.|++||+||.+++... +.+.. ...|+++.++++|++|..+..+.|.+||..+
T Consensus 155 D-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaks- 214 (334)
T KOG0278|consen 155 D-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKS- 214 (334)
T ss_pred C-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCCEEEEecCceeEEecccc-
Confidence 7 89999999999999999999866 55554 4689999999999999888779999999987
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
..+++.++.+... .+..++|+...+++|+.|+.++.||..++.++....++|.++|-++.|+|
T Consensus 215 f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP- 277 (334)
T KOG0278|consen 215 FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP- 277 (334)
T ss_pred ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-
Confidence 7778777766543 48999999999999999999999999999775544467777666666666
Q ss_pred Cccccccccceeeecccce-ecCC
Q 011368 425 PRARRSSLSNLTRGLYRQA-HENS 447 (487)
Q Consensus 425 ~~~~~~~~~~l~~g~~~~~-~~w~ 447 (487)
+|.. -++|+.||. ++|.
T Consensus 278 -dGE~-----yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 278 -DGEL-----YASGSEDGTIRLWQ 295 (334)
T ss_pred -CCce-----eeccCCCceEEEEE
Confidence 4544 566666666 6663
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.3e-34 Score=248.35 Aligned_cols=286 Identities=15% Similarity=0.168 Sum_probs=233.9
Q ss_pred cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
..+|+..|+++.|.| .+.+|++|+.|+.|+||++.+. .++++++.+|.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--------------------------~~~lrtf~gH~----- 258 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--------------------------RRCLRTFKGHR----- 258 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--------------------------cceehhhhcch-----
Confidence 446899999999999 8899999999999999998763 23579999999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
.+|..++| +.+|..|++++.|+.|++||+++|+.....
T Consensus 259 -------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f--------------------------------- 296 (503)
T KOG0282|consen 259 -------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRF--------------------------------- 296 (503)
T ss_pred -------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEE---------------------------------
Confidence 99999999 689999999999999999999999876541
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
.....++|+.|.|++ +.+++| .|+.|+.||+++++ .+ +.+..|-+.|..+.|-++
T Consensus 297 ---------------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vv-------qeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 297 ---------------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VV-------QEYDRHLGAILDITFVDE 353 (503)
T ss_pred ---------------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HH-------HHHHhhhhheeeeEEccC
Confidence 234557899999988 778888 99999999999554 33 245678899999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
| ..++++++|+.++||+.+..-.+.. +.... .-...++..+|++.++++-+ |+.|.++.+..
T Consensus 354 g-~rFissSDdks~riWe~~~~v~ik~-i~~~~---------------~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 354 G-RRFISSSDDKSVRIWENRIPVPIKN-IADPE---------------MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred C-ceEeeeccCccEEEEEcCCCccchh-hcchh---------------hccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 9 9999999999999999988654311 11111 23678899999999999865 69999998753
Q ss_pred C--CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368 344 D--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 421 (487)
Q Consensus 344 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 421 (487)
. ......+.+|...-. - ..+.|||||++|++|+.||.+.+||.++- .+...+++|..++..+.+
T Consensus 417 ~~r~nkkK~feGh~vaGy----------s---~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVAGY----------S---CQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred ccccCHhhhhcceeccCc----------e---eeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEe
Confidence 2 233455666654321 1 47999999999999999999999999987 558899999999999999
Q ss_pred eeCCccccccccceeeecccce-ecC
Q 011368 422 QAAPRARRSSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 422 ~~~~~~~~~~~~~l~~g~~~~~-~~w 446 (487)
.|....+ +++++-+|. ++|
T Consensus 483 HP~e~Sk------vat~~w~G~Ikiw 502 (503)
T KOG0282|consen 483 HPVEPSK------VATCGWDGLIKIW 502 (503)
T ss_pred cCCCcce------eEecccCceeEec
Confidence 9975444 688888888 887
No 41
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=254.26 Aligned_cols=276 Identities=20% Similarity=0.339 Sum_probs=206.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCC--------------------CCcccchhhhhccccc------
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT--------------------PNQHISRSELEKQMDF------ 83 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~--------------------~~~~~~~~~~~~~~~~------ 83 (487)
.|.+.|+++.||+||+|||+|+.|+.|+||.+...+.. .+.......+.+....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 69999999999999999999999999999998762110 0000000000000000
Q ss_pred --c-----ccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC
Q 011368 84 --T-----STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (487)
Q Consensus 84 --~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 156 (487)
. -.+.=..+++..|+||. +.|..|.|+ ...+|++++.|++||||++...++++.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheecccc---cCCeeEeccccccEEeecCCCcceeeE----
Confidence 0 01111235677889998 889999993 467999999999999999998876654
Q ss_pred CCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccC
Q 011368 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEI 234 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~ 234 (487)
-.|.+-|+|++|+| |.++|++| -|+.|+||++.
T Consensus 406 --------------------------------------------F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~- 440 (712)
T KOG0283|consen 406 --------------------------------------------FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS- 440 (712)
T ss_pred --------------------------------------------EecCCeeEEEEecccCCCcEeecccccceEEeecC-
Confidence 48999999999999 88999999 99999999998
Q ss_pred CCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc
Q 011368 235 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 314 (487)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 314 (487)
..+.+. ......-|++++|.|+| +..+.|+.+|.+++|+.+..++. ..+.-+. ...+ . ..|.
T Consensus 441 d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~----~~~~I~~--~~~K-k-~~~~- 502 (712)
T KOG0283|consen 441 DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLV----SDFHIRL--HNKK-K-KQGK- 502 (712)
T ss_pred cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEE----EeeeEee--ccCc-c-ccCc-
Confidence 333332 23344779999999999 99999999999999999886643 2222210 0000 0 1122
Q ss_pred ceeEEEEcCCC--CEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 315 SISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 315 ~v~~v~~s~~~--~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
.|+.+.|.|.. +.|++..|..|||||.+. ..++..|++....... ....|+.||++|+++++|.
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeEccCCCEEEEeecCc
Confidence 79999998754 378888899999999986 8889999987664321 3789999999999999999
Q ss_pred cEEEEEeCC
Q 011368 393 LLRIFSHGV 401 (487)
Q Consensus 393 ~i~iwd~~~ 401 (487)
.|+||+...
T Consensus 569 ~VYiW~~~~ 577 (712)
T KOG0283|consen 569 WVYIWKNDS 577 (712)
T ss_pred eEEEEeCCC
Confidence 999999843
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.1e-33 Score=242.84 Aligned_cols=290 Identities=20% Similarity=0.331 Sum_probs=233.1
Q ss_pred ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (487)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
-+.+.++.||. ..|+++.|.| ..+.+|++++.|+.|+||++....
T Consensus 204 kk~~~~~~gH~------------kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~~---------------------- 248 (503)
T KOG0282|consen 204 KKLSHNLSGHT------------KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDDR---------------------- 248 (503)
T ss_pred HhheeeccCCc------------cccchhhhcc-ceeeEEEecCCCceEEEEEEecCc----------------------
Confidence 34568899999 9999999975 368999999999999999998732
Q ss_pred cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368 171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 249 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 249 (487)
.++++| .+|..+|.+++|+++|..+.++ .|+.|++||++++. +...+
T Consensus 249 -----------------------~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~-~~~~f------- 296 (503)
T KOG0282|consen 249 -----------------------RCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ-VLSRF------- 296 (503)
T ss_pred -----------------------ceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccccce-EEEEE-------
Confidence 244444 8999999999999999999999 99999999999654 44332
Q ss_pred CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368 250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329 (487)
Q Consensus 250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 329 (487)
.....++|+.|+|++++.+++|+.|+.|+.||+++++.+ +.+.. |-+.|..+.|-++|+.++
T Consensus 297 -~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~-------------hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 297 -HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDR-------------HLGAILDITFVDEGRRFI 358 (503)
T ss_pred -ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHh-------------hhhheeeeEEccCCceEe
Confidence 234567999999999899999999999999999999866 55554 367899999999999999
Q ss_pred EEeC-CeEEEEeCCCCCceeeeeeccc-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC--ce
Q 011368 330 SRDY-MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--AG 405 (487)
Q Consensus 330 s~~d-~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~--~~ 405 (487)
+.+| ++++||+.+. ..++..+..+. ... .++..+|+++++++-+.|+.|.++.+...- ..
T Consensus 359 ssSDdks~riWe~~~-~v~ik~i~~~~~hsm---------------P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRI-PVPIKNIADPEMHTM---------------PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred eeccCccEEEEEcCC-CccchhhcchhhccC---------------cceecCCCCCeehhhccCceEEEEecccccccCH
Confidence 8865 9999999986 44444332221 111 389999999999999999999999976532 23
Q ss_pred eEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCC-CEEEEecCCe
Q 011368 406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTT-NLIACANGNS 481 (487)
Q Consensus 406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~-~~la~~s~~~ 481 (487)
...+++|..+-.++....+.||.+ |++|..+|. .+| ++..+......|++.+..+.|||-. ..+|+++-+|
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCe-----EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc
Confidence 567888887766555544458998 999999999 888 6666777778899999999999986 5688888555
Q ss_pred -EEEEe
Q 011368 482 -LFFHY 486 (487)
Q Consensus 482 -~~i~~ 486 (487)
+++|.
T Consensus 498 ~Ikiwd 503 (503)
T KOG0282|consen 498 LIKIWD 503 (503)
T ss_pred eeEecC
Confidence 88884
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.7e-31 Score=227.25 Aligned_cols=273 Identities=19% Similarity=0.296 Sum_probs=212.8
Q ss_pred CCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC
Q 011368 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (487)
Q Consensus 22 ~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (487)
.+.+.+.+.|.+-|.++... +++|++|++||.++|||..+. ...++.||.
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----------------------------~~~~~~Ght 144 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----------------------------SIKTIVGHT 144 (423)
T ss_pred CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc----------------------------eEEEEecCC
Confidence 44556677799999999988 789999999999999997654 358899999
Q ss_pred cccccccccccccceeEEEEEe-cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCC
Q 011368 102 PEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (487)
Q Consensus 102 ~~~~~~~~~~~~~~I~~v~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (487)
++|.+++|.- ++....|++++.|.++++|.++.+......
T Consensus 145 ------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~--------------------------- 185 (423)
T KOG0313|consen 145 ------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA--------------------------- 185 (423)
T ss_pred ------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH---------------------------
Confidence 9999999863 222346999999999999999877543210
Q ss_pred CcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC-CceeEE----------------e
Q 011368 181 SFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNI----------------V 242 (487)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~-~~~~~~----------------~ 242 (487)
... ..||...|.+++..++|..+++| .|..|+||+..+. ...++- .
T Consensus 186 ---------------~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 186 ---------------LKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred ---------------HhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 000 25999999999999999999999 9999999993321 000100 0
Q ss_pred ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
+.+...+.+|...|.++.|++. ..+++++.|.+|+.||+.++... ..+.. ...+.++.++
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~----~~~~~--------------~ksl~~i~~~ 309 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLK----STLTT--------------NKSLNCISYS 309 (423)
T ss_pred cCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccce----eeeec--------------CcceeEeecc
Confidence 1122357899999999999984 69999999999999999998765 34444 4689999999
Q ss_pred CCCCEEEEEe-CCeEEEEeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEE
Q 011368 323 NDGQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFS 398 (487)
Q Consensus 323 ~~~~~l~s~~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd 398 (487)
|..++|++|+ |..|++||.++.. .....+.+|.+.+ .++.|+|.. .+|++|+.|+++++||
T Consensus 310 ~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 310 PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheecCCCCceEEEEEecCCeEEEEE
Confidence 9999999985 7999999998743 3456788999876 589999954 5688999999999999
Q ss_pred eCCCCceeEEEeccCC
Q 011368 399 HGVGSAGGITVEAGKN 414 (487)
Q Consensus 399 ~~~~~~~~~~~~~~~~ 414 (487)
+++.+..+..+.+|.+
T Consensus 375 vRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 375 VRSTKAPLYDIAGHND 390 (423)
T ss_pred eccCCCcceeeccCCc
Confidence 9987555555555544
No 44
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=236.34 Aligned_cols=311 Identities=19% Similarity=0.295 Sum_probs=223.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|+..|+++++.|.|..|++|+.|.+|++||+...... -+.++.+.-...|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--------------------~~~fr~l~P~E~h------- 215 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--------------------MRSFRQLQPCETH------- 215 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc--------------------chhhhccCccccc-------
Confidence 4456889999999999999999999999999999877531 1112222223344
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.|.+++| ++.|..|++.+.....+|+|-.+.+.....+..... .
T Consensus 216 -------~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI--------------------------~- 259 (641)
T KOG0772|consen 216 -------QINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI--------------------------R- 259 (641)
T ss_pred -------ccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeeccchhh--------------------------h-
Confidence 4999999 567888988888899999998877665553322111 0
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
.... ..+|...++|.+|+|. .+.++++ .||+++|||++......+++..+ ...+..-.++.++|+|+|
T Consensus 260 -------Dm~n-TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--~~~g~Rv~~tsC~~nrdg 329 (641)
T KOG0772|consen 260 -------DMYN-TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--PAGGKRVPVTSCAWNRDG 329 (641)
T ss_pred -------hhhc-cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec--cCCCcccCceeeecCCCc
Confidence 0000 2799999999999995 4456677 99999999999776666554322 233445578999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc--ceeEEEEcCCCCEEEEE-eCCeEEEEeCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR-DYMNLKLWDIR 342 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~s~-~d~~i~iwd~~ 342 (487)
+.||+|..||.|.+|+.++.... -..+.-.. |.. .|++|.||+||++|++. .|+++++||++
T Consensus 330 -~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~A-------------H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 330 -KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDA-------------HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred -chhhhcccCCceeeeecCCcccc-cceEeeec-------------cCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 99999999999999998653311 11122223 344 89999999999999996 57999999999
Q ss_pred CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC------CCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
...+++....+-...- .-+.++|||+.++|++|+. .|.+.+||..+-.. ++.+...
T Consensus 395 q~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~-v~ki~i~---- 456 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT-VYKIDIS---- 456 (641)
T ss_pred ccccchhhhcCCCccC-------------CCCccccCCCceEEEecccccCCCCCceEEEEeccceee-EEEecCC----
Confidence 8778877766544321 1258999999999999864 36788888776522 2222211
Q ss_pred ccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
...|..+.|||.-+.|.+++.|+ ++||+
T Consensus 457 ------------------------------------------~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 457 ------------------------------------------TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ------------------------------------------CceEEEEeecchhhheeeecCCCceEEEE
Confidence 22667788888888777777554 67664
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=226.92 Aligned_cols=291 Identities=15% Similarity=0.225 Sum_probs=235.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...+-|..|||||+||++|+.||-|.+|+..+++. ++.| .|+....|.-+.
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl-------rKDL------------kYQAqd~fMMmd---------- 263 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL-------RKDL------------KYQAQDNFMMMD---------- 263 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchh-------hhhh------------hhhhhcceeecc----------
Confidence 45688999999999999999999999999999875 3333 122223333344
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.+|.|+.| +.|...+++|+.||.|++|.+.+|.+.+.
T Consensus 264 --~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRr--------------------------------------- 300 (508)
T KOG0275|consen 264 --DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRR--------------------------------------- 300 (508)
T ss_pred --cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHH---------------------------------------
Confidence 89999999 67889999999999999999999975443
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
+-..|...|+|+.|+.|+..+.++ .|.++++.-++. +++++ .+.+|.+.|+...|.++| ..++
T Consensus 301 -------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LK-------EfrGHsSyvn~a~ft~dG-~~ii 364 (508)
T KOG0275|consen 301 -------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLK-------EFRGHSSYVNEATFTDDG-HHII 364 (508)
T ss_pred -------hhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHH-------HhcCccccccceEEcCCC-CeEE
Confidence 336899999999999999999999 999999999994 44443 578999999999999999 9999
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEe-CCeEEEEeCCCCCcee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
+++.||+|++|+..+.++. .+|.. .+...+|+++..-|.+ ..++.|. .++|+|.++. +..+
T Consensus 365 saSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQvV 427 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQVV 427 (508)
T ss_pred EecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ceEE
Confidence 9999999999999998765 55554 1225678888877754 4566665 4999999985 7888
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 428 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 428 (487)
+.+......-. +..+.+.||.|.++.+.+.|+.++.+.+.+| ....++..|...+..++-.|.++
T Consensus 428 rsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HHPHqN-- 492 (508)
T KOG0275|consen 428 RSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHHPHQN-- 492 (508)
T ss_pred eeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccCcccc--
Confidence 88875543211 1248999999999999999999999999998 45788899999888888888532
Q ss_pred cccccceeeecccce-ecCC
Q 011368 429 RSSLSNLTRGLYRQA-HENS 447 (487)
Q Consensus 429 ~~~~~~l~~g~~~~~-~~w~ 447 (487)
. +++-+.|+. ++|.
T Consensus 493 l-----lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 L-----LASYSEDGLLKLWK 507 (508)
T ss_pred h-----hhhhcccchhhhcC
Confidence 2 889999999 9994
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-31 Score=214.04 Aligned_cols=277 Identities=18% Similarity=0.272 Sum_probs=218.9
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
+...|...|.+++|+.+|..|++|+.|+++.+|+++..+. ..-....+|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-------------------------~~~~~~~gh~----- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-------------------------RKELVYRGHT----- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-------------------------hhhhcccCCC-----
Confidence 4456888999999999999999999999999999986632 1224467888
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
+.|..++|.| +...+|++++.|.+|++||+..++.....
T Consensus 65 -------~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i--------------------------------- 103 (313)
T KOG1407|consen 65 -------DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARI--------------------------------- 103 (313)
T ss_pred -------cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEe---------------------------------
Confidence 8899999987 55678999999999999999998865542
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
.....=.-+.|+|+|++++.+ .|..|.+.|.++. +... -+.....+..+.|+-++
T Consensus 104 ---------------~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~--------~~~~~~e~ne~~w~~~n 159 (313)
T KOG1407|consen 104 ---------------ETKGENINITWSPDGEYIAVGNKDDRITFIDARTY-KIVN--------EEQFKFEVNEISWNNSN 159 (313)
T ss_pred ---------------eccCcceEEEEcCCCCEEEEecCcccEEEEEeccc-ceee--------hhcccceeeeeeecCCC
Confidence 122223467899999999999 9999999999843 3322 12334457788898766
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~ 344 (487)
.+++.....|.|.|.....-+.+ ..++. |.....+|.|+|+|+|+|+|+ |-.+.+||+..
T Consensus 160 -d~Fflt~GlG~v~ILsypsLkpv----~si~A-------------H~snCicI~f~p~GryfA~GsADAlvSLWD~~E- 220 (313)
T KOG1407|consen 160 -DLFFLTNGLGCVEILSYPSLKPV----QSIKA-------------HPSNCICIEFDPDGRYFATGSADALVSLWDVDE- 220 (313)
T ss_pred -CEEEEecCCceEEEEeccccccc----ccccc-------------CCcceEEEEECCCCceEeeccccceeeccChhH-
Confidence 77777777899999887764433 55666 478899999999999999985 69999999974
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
-.+++.+..+.-++ +.+.||.||++||+||+|..|-|=++++|.. +.+
T Consensus 221 LiC~R~isRldwpV---------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~-~~e---------------- 268 (313)
T KOG1407|consen 221 LICERCISRLDWPV---------------RTLSFSHDGRMLASASEDHFIDIAEVETGDR-VWE---------------- 268 (313)
T ss_pred hhhheeeccccCce---------------EEEEeccCcceeeccCccceEEeEecccCCe-EEE----------------
Confidence 77788888777655 6999999999999999999999999999843 111
Q ss_pred CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC
Q 011368 425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN 480 (487)
Q Consensus 425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~ 480 (487)
..++++-..|||||...+||.+++|
T Consensus 269 -------------------------------I~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 269 -------------------------------IPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred -------------------------------eeccCCceeEEecCCCceeeEEecC
Confidence 1233456789999999999988843
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=212.43 Aligned_cols=244 Identities=17% Similarity=0.296 Sum_probs=195.4
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|+..|..++|+|.|++||+|+.|.++.||.-..+ +++++.++.||+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------------------------efecv~~lEGHE-------- 105 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------------------------EFECVATLEGHE-------- 105 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------------------------ceeEEeeeeccc--------
Confidence 48999999999999999999999999999986654 778899999999
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|.+++| +++|.+||++++|+.|-||.+..+....
T Consensus 106 ----nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfe-------------------------------------- 141 (312)
T KOG0645|consen 106 ----NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFE-------------------------------------- 141 (312)
T ss_pred ----cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEE--------------------------------------
Confidence 88999999 6889999999999999999998553221
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+... +.+|...|..+.|+|...+|+++ .|++|++|+-.. +...... .++.+|...|.+++|++.| ..
T Consensus 142 -----c~aV-L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~----~tl~g~~~TVW~~~F~~~G-~r 209 (312)
T KOG0645|consen 142 -----CIAV-LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECV----QTLDGHENTVWSLAFDNIG-SR 209 (312)
T ss_pred -----EEee-eccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEE----EEecCccceEEEEEecCCC-ce
Confidence 1122 48999999999999999999999 999999998773 3222221 3578999999999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCC-Cc
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD-ST 346 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~-~~ 346 (487)
|++++.|++++||-....- . ..|...+..+.|. +| .|+++ .|+.|++|.-... ..
T Consensus 210 l~s~sdD~tv~Iw~~~~~~---------~------------~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~ 266 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRLYTDL---------S------------GMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDE 266 (312)
T ss_pred EEEecCCcceEeeeeccCc---------c------------hhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCC
Confidence 9999999999999866421 1 1235789999998 44 67765 6899999976531 11
Q ss_pred eee-----eeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeC
Q 011368 347 PVA-----TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 347 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~ 400 (487)
+.. .-..|.. +|+++.|.|. ...|++|+.||.|++|.+.
T Consensus 267 p~~~l~~~~~~aHe~---------------dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 267 PSWNLLAKKEGAHEV---------------DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred chHHHHHhhhccccc---------------ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 211 1223333 3469999994 7789999999999999875
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=239.85 Aligned_cols=360 Identities=15% Similarity=0.194 Sum_probs=264.2
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...|+|+.-+|+.-+||.|..||.|+||+...... ..++.||.
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~---------------------------~~tfngHK---------- 107 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI---------------------------LITFNGHK---------- 107 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCce---------------------------eeeecccc----------
Confidence 45899999999999999999999999999876543 57899999
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.+|+.+.| ...|.+|++|+.|+.|.+||+-...-.... ..+...+..+-| ..+..++.+.+.+..... |+
T Consensus 108 --~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F-~~~~~~lvS~sKDs~iK~----Wd 177 (888)
T KOG0306|consen 108 --AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALF-LNGDSFLVSVSKDSMIKF----WD 177 (888)
T ss_pred --cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhc-cCCCeEEEEeccCceEEE----Ee
Confidence 99999999 688999999999999999999765432221 111122222222 223444444444443332 33
Q ss_pred ccceeeeeccc---CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC-----------------------CceeEEe--
Q 011368 192 ENMATKVYPHA---HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----------------------DQCFNIV-- 242 (487)
Q Consensus 192 ~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~-----------------------~~~~~~~-- 242 (487)
....- . +.. |.+.|+.+++.+ +.++++ .|+.+++|++... ++.+++.
T Consensus 178 L~tqh-C-f~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 178 LETQH-C-FETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred cccce-e-eeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 22221 1 233 357788888886 677777 9999999998210 0011111
Q ss_pred --------------------------------------------------------------------------------
Q 011368 243 -------------------------------------------------------------------------------- 242 (487)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (487)
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence
Q ss_pred ------------------e--cCC---------CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccc
Q 011368 243 ------------------D--MKP---------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 293 (487)
Q Consensus 243 ------------------~--~~~---------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 293 (487)
. .+. .++.+|...|.+++++.+. .++..+..+.+++|+..+.+.+
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~t~kci---- 407 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRDTLKCI---- 407 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecCCCcEEEEEccCccee----
Confidence 0 001 2345788889999999885 4444455678999999988766
Q ss_pred eeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcce
Q 011368 294 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 372 (487)
Q Consensus 294 ~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (487)
+++.. +.+.+..|-|.+++++.|.+ |.+.+||+.+ ...+..+++|.+.+
T Consensus 408 RTi~~---------------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaI-------------- 457 (888)
T KOG0306|consen 408 RTITC---------------GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAI-------------- 457 (888)
T ss_pred EEecc---------------ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhccccce--------------
Confidence 77776 58899999999999999976 9999999987 88889999999865
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEEeCCC----CceeEEEec-------cCCccccceEeeCCccccccccceeeeccc
Q 011368 373 KFECSVSGDGLHFATGSYSNLLRIFSHGVG----SAGGITVEA-------GKNENRKPILQAAPRARRSSLSNLTRGLYR 441 (487)
Q Consensus 373 ~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~ 441 (487)
++++.+||++.+++||.|.+|++||..-- +.....+.- -.+.+-++.++| |+++ |+.+--|
T Consensus 458 -Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp--dgk~-----LaVsLLd 529 (888)
T KOG0306|consen 458 -WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP--DGKL-----LAVSLLD 529 (888)
T ss_pred -eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC--CCcE-----EEEEecc
Confidence 79999999999999999999999998631 111111222 134566777777 8998 9999999
Q ss_pred ce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecC-CeEEEEe
Q 011368 442 QA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY 486 (487)
Q Consensus 442 ~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~~ 486 (487)
.. +++ ++-.....+++|.=||.+|..|||++.|++||. .++.||-
T Consensus 530 nTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 530 NTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred CeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 88 888 444556678899999999999999999999994 4699994
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-31 Score=246.95 Aligned_cols=280 Identities=16% Similarity=0.233 Sum_probs=227.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
.+..|..++|+|...++.++-.+|.|++||..-+.+ +..|..|.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---------------------------i~rFdeHd--------- 51 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---------------------------IDRFDEHD--------- 51 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhH---------------------------HhhhhccC---------
Confidence 366899999999999999999999999999876654 46688888
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
++|..|+|+ |.+.+|++|+.|..|++|+..+.++...
T Consensus 52 ---GpVRgv~FH--~~qplFVSGGDDykIkVWnYk~rrclft-------------------------------------- 88 (1202)
T KOG0292|consen 52 ---GPVRGVDFH--PTQPLFVSGGDDYKIKVWNYKTRRCLFT-------------------------------------- 88 (1202)
T ss_pred ---Cccceeeec--CCCCeEEecCCccEEEEEecccceehhh--------------------------------------
Confidence 999999996 5678999999999999999998876544
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
+.+|-+.|+.+.|++.-..|+++ +|.+|+||+.. .++++.+ +.+|+..|+|..|+|.. ..+
T Consensus 89 ---------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iav-------ltGHnHYVMcAqFhptE-DlI 150 (1202)
T KOG0292|consen 89 ---------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAV-------LTGHNHYVMCAQFHPTE-DLI 150 (1202)
T ss_pred ---------hccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEE-------EecCceEEEeeccCCcc-ceE
Confidence 48999999999999999999999 99999999999 5666654 58999999999999988 999
Q ss_pred EEEeCCCeEEEEEccCCccccccce----eecccc--------cccCccccccccccceeEEEEcCCCCEEEEEeC-CeE
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSAR----ILRDAA--------ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 336 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~h~--------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i 336 (487)
+++|-|.+||+||+..-+......- .+.++. .....+..+.||...|+-++|+|.-.++++|+| ..|
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 9999999999999975331100000 011100 011223456899999999999999999999965 999
Q ss_pred EEEeCCC-CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368 337 KLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 415 (487)
Q Consensus 337 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 415 (487)
++|.+.. ..-.+.+..+|.+.+ .++-|+|...+|++.|.|++|+|||+... ..+++++...+.
T Consensus 231 KlWrmnetKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendR 294 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDR 294 (1202)
T ss_pred eEEEeccccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCe
Confidence 9999863 123466778888866 59999999999999999999999999865 446777666666
Q ss_pred cccceEee
Q 011368 416 NRKPILQA 423 (487)
Q Consensus 416 v~~~~~~~ 423 (487)
-+.++..|
T Consensus 295 FW~laahP 302 (1202)
T KOG0292|consen 295 FWILAAHP 302 (1202)
T ss_pred EEEEEecC
Confidence 66677666
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-29 Score=210.90 Aligned_cols=267 Identities=18% Similarity=0.274 Sum_probs=203.3
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...|+++.|+++|.+|++++.|.+++|||..+++. +.++..++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------------~~ti~skk---------- 56 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------------VKTINSKK---------- 56 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------------eeEeeccc----------
Confidence 66899999999999999999999999999988865 46666666
Q ss_pred cccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
-.|..++|. .....++.++ .|.+||..++.+.+.++.
T Consensus 57 --yG~~~~~Ft--h~~~~~i~sStk~d~tIryLsl~dNkylRY------------------------------------- 95 (311)
T KOG1446|consen 57 --YGVDLACFT--HHSNTVIHSSTKEDDTIRYLSLHDNKYLRY------------------------------------- 95 (311)
T ss_pred --ccccEEEEe--cCCceEEEccCCCCCceEEEEeecCceEEE-------------------------------------
Confidence 678999995 3444555555 489999999999886654
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.||...|+.++.+|-+..++++ .|++|++||++. .++..++. ...-..++|+|+| .+
T Consensus 96 ----------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l~---------~~~~pi~AfDp~G-Li 154 (311)
T KOG1446|consen 96 ----------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-KKCQGLLN---------LSGRPIAAFDPEG-LI 154 (311)
T ss_pred ----------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-CCCceEEe---------cCCCcceeECCCC-cE
Confidence 59999999999999988999998 999999999994 44444431 1223457899999 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~ 347 (487)
+|++...+.|+|||+|.-.. .....|.. ..+.....+.+.|||||++|+.+.. +.+++.|.-. +..
T Consensus 155 fA~~~~~~~IkLyD~Rs~dk--gPF~tf~i----------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~ 221 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDK--GPFTTFSI----------TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTV 221 (311)
T ss_pred EEEecCCCeEEEEEecccCC--CCceeEcc----------CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcE
Confidence 99998888999999997421 11122222 0122467899999999999998765 8999999876 788
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec-cCCccccceEee
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQA 423 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~ 423 (487)
...+..+...... . .+.+|+||++++++|+.||+|.+|+++++.. +..+.+ +..++..+.|.|
T Consensus 222 ~~tfs~~~~~~~~--------~----~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 222 KSTFSGYPNAGNL--------P----LSATFTPDSKFVLSGSDDGTIHVWNLETGKK-VAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred eeeEeeccCCCCc--------c----eeEEECCCCcEEEEecCCCcEEEEEcCCCcE-eeEecCCCCCCccccccCC
Confidence 8888776653210 1 3899999999999999999999999999854 333333 344444444433
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.9e-31 Score=216.98 Aligned_cols=253 Identities=18% Similarity=0.279 Sum_probs=207.4
Q ss_pred ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (487)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
..+...+.+|+ +.|+.+.| .|+|.+|++|+.|..|.+|++.......-
T Consensus 37 ~ap~m~l~gh~------------geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------------------ 84 (338)
T KOG0265|consen 37 QAPIMLLPGHK------------GEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDCENFW------------------ 84 (338)
T ss_pred cchhhhcCCCc------------ceEEEEEE--CCCCCeEeecCCcceEEEEecccccccee------------------
Confidence 34567788998 88999999 57999999999999999999865431111
Q ss_pred cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368 171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 249 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 249 (487)
.+.+|.+.|..+.|.+|++.|+++ .|.+++.||.++++... ++
T Consensus 85 ----------------------------~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r--------k~ 128 (338)
T KOG0265|consen 85 ----------------------------VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR--------KH 128 (338)
T ss_pred ----------------------------eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee--------hh
Confidence 137999999999999999999999 99999999999665433 46
Q ss_pred CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368 250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329 (487)
Q Consensus 250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 329 (487)
.+|..-|..+.-+.-|+.++.+++.||++++||+|+...+ ++++. ..+++++.|..++..+.
T Consensus 129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~~--------------kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFEN--------------KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred ccccceeeecCccccCCeEEEecCCCceEEEEeecccchh----hcccc--------------ceeEEEEEeccccccee
Confidence 8899999999866677788889999999999999987765 66655 56899999999999999
Q ss_pred EEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc---e
Q 011368 330 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---G 405 (487)
Q Consensus 330 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~---~ 405 (487)
+|. |+.|++||++. ......+.+|..++ +.+..+|+|.++.+-+.|.++++||++.-.. .
T Consensus 191 sggIdn~ikvWd~r~-~d~~~~lsGh~DtI---------------t~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRK-NDGLYTLSGHADTI---------------TGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred eccccCceeeecccc-CcceEEeecccCce---------------eeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 886 79999999997 88999999999876 6999999999999999999999999985311 1
Q ss_pred eEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEE
Q 011368 406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF 484 (487)
Q Consensus 406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i 484 (487)
+..+.+ ....++.....++|+|++..+..|+.| .+|+
T Consensus 255 v~if~g------------------------------------------~~hnfeknlL~cswsp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 255 VKIFQG------------------------------------------HIHNFEKNLLKCSWSPNGTKITAGSADRFVYV 292 (338)
T ss_pred EEEeec------------------------------------------chhhhhhhcceeeccCCCCccccccccceEEE
Confidence 111111 223455567788999999999888844 5999
Q ss_pred EeC
Q 011368 485 HYA 487 (487)
Q Consensus 485 ~~~ 487 (487)
|.+
T Consensus 293 wd~ 295 (338)
T KOG0265|consen 293 WDT 295 (338)
T ss_pred eec
Confidence 974
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-30 Score=228.09 Aligned_cols=301 Identities=17% Similarity=0.275 Sum_probs=226.7
Q ss_pred CcccccccccchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCE-EEEEecCCcEEEEEeeCCcCCCCcccchhhhhc
Q 011368 1 MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEK 79 (487)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 79 (487)
|.+.+..+++...|+-.. . .......+.|.+++|||...+ +|+.+ .-.+.||+..+....
T Consensus 1 ~~~~~~~t~e~~~w~~~~--~----~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~------------ 61 (487)
T KOG0310|consen 1 MALPQSETPEIRYWRQET--F----PPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR------------ 61 (487)
T ss_pred CCCCcCCCccchhhhhhc--c----cccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh------------
Confidence 445566666777774221 1 112223568999999996643 33332 347999997765431
Q ss_pred cccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCC
Q 011368 80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 159 (487)
+++.-.. ..|.++.| -.||++|++|...|.|+++|+.+......
T Consensus 62 ---------------k~~srFk------------~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~------- 105 (487)
T KOG0310|consen 62 ---------------KTFSRFK------------DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQ------- 105 (487)
T ss_pred ---------------hhHHhhc------------cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHH-------
Confidence 2222223 77999999 48999999999999999999665433222
Q ss_pred ceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCc
Q 011368 160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ 237 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~ 237 (487)
+.+|+.++..+.|+|.+ ..+++| +|+.+++||+.+..
T Consensus 106 ----------------------------------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~- 144 (487)
T KOG0310|consen 106 ----------------------------------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY- 144 (487)
T ss_pred ----------------------------------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-
Confidence 48999999999999964 556667 89999999999443
Q ss_pred eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccccee
Q 011368 238 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 317 (487)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 317 (487)
. . ..+.+|.+.|.|.+|+|..+.++++|+.||.|++||++..... +..++ |..+|.
T Consensus 145 v-~------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~---v~eln--------------hg~pVe 200 (487)
T KOG0310|consen 145 V-Q------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR---VVELN--------------HGCPVE 200 (487)
T ss_pred E-E------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce---eEEec--------------CCCcee
Confidence 2 2 2468999999999999987679999999999999999986311 12332 468999
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEE
Q 011368 318 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 397 (487)
Q Consensus 318 ~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iw 397 (487)
.+.+-|.|..+++++.+.|++||+.++++.+..+..|...+ +++.+..++..|++|+-|+.+++|
T Consensus 201 ~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~VKVf 265 (487)
T KOG0310|consen 201 SVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHVKVF 265 (487)
T ss_pred eEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccceEEE
Confidence 99999999999999889999999987677777777677755 799999999999999999999999
Q ss_pred EeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEe
Q 011368 398 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 477 (487)
Q Consensus 398 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~ 477 (487)
|+.+-+ +.. ...+.++|.+++.+||+..++.|
T Consensus 266 d~t~~K---------------vv~---------------------------------s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 266 DTTNYK---------------VVH---------------------------------SWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EccceE---------------EEE---------------------------------eeecccceeeEEecCCCceEEEe
Confidence 976541 111 12445588899999999999988
Q ss_pred cCCeEEE
Q 011368 478 NGNSLFF 484 (487)
Q Consensus 478 s~~~~~i 484 (487)
-.|++..
T Consensus 298 msnGlv~ 304 (487)
T KOG0310|consen 298 MSNGLVS 304 (487)
T ss_pred cccceee
Confidence 8887654
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=4.2e-31 Score=223.15 Aligned_cols=290 Identities=14% Similarity=0.220 Sum_probs=245.2
Q ss_pred cccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceee
Q 011368 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 163 (487)
+..++.+++..+.+++|. +.|.+|++ .|.+.+|++|+.|++++|||+.+++++..
T Consensus 134 rPeWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt----------- 188 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT----------- 188 (460)
T ss_pred CccccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe-----------
Confidence 456788899999999999 99999999 56789999999999999999999987765
Q ss_pred eeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEe
Q 011368 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV 242 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 242 (487)
+.+|...|..+++|+-..+++++ .|+.|+.||++.++ .+
T Consensus 189 ------------------------------------ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-vI--- 228 (460)
T KOG0285|consen 189 ------------------------------------LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-VI--- 228 (460)
T ss_pred ------------------------------------ecchhheeeeeeecccCceEEEecCCCeeEEEechhhh-hH---
Confidence 48999999999999999999999 99999999999544 33
Q ss_pred ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
+.+.+|-+.|+|++.+|.- ..|++|+.|..+|+||+++...+ .++.+ |...|.++.+.
T Consensus 229 ----R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V----~~l~G-------------H~~~V~~V~~~ 286 (460)
T KOG0285|consen 229 ----RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV----HVLSG-------------HTNPVASVMCQ 286 (460)
T ss_pred ----HHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE----EEecC-------------CCCcceeEEee
Confidence 3567999999999999998 99999999999999999997644 56666 58999999999
Q ss_pred CCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 323 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 323 ~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
|-...+++|+ |++|++||++. ++....+..|...+ .+++.+|....+|+++.| .|+-|++..
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv---------------ral~lhP~e~~fASas~d-nik~w~~p~ 349 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV---------------RALCLHPKENLFASASPD-NIKQWKLPE 349 (460)
T ss_pred cCCCceEEecCCceEEEeeecc-CceeEeeeccccee---------------eEEecCCchhhhhccCCc-cceeccCCc
Confidence 8877888886 79999999997 88899998888754 699999999999999988 699999998
Q ss_pred CCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCccc--------cccccCCCeEEEEEcCC
Q 011368 402 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHE--------LSYNLSSKLLHLAWHPT 470 (487)
Q Consensus 402 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~--------~~~~~~~~v~~~~~spd 470 (487)
|.. ...+.+|...++.++... |+. +++|+.++. ..| ..+.... ....-+..|...+|...
T Consensus 350 g~f-~~nlsgh~~iintl~~ns--D~v------~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt 420 (460)
T KOG0285|consen 350 GEF-LQNLSGHNAIINTLSVNS--DGV------LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT 420 (460)
T ss_pred cch-hhccccccceeeeeeecc--Cce------EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence 855 555999999999998876 444 799999998 777 3331111 12244568999999999
Q ss_pred CCEEEEecCC-eEEEEe
Q 011368 471 TNLIACANGN-SLFFHY 486 (487)
Q Consensus 471 ~~~la~~s~~-~~~i~~ 486 (487)
|..|++|..| .+.+|.
T Consensus 421 g~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYK 437 (460)
T ss_pred CceEEeccCCcceEEEe
Confidence 9999988854 588874
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.7e-31 Score=226.33 Aligned_cols=286 Identities=14% Similarity=0.140 Sum_probs=224.1
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
...+..|. +.|.-+.| +++|++||+++.|.+..+|.+.......+.
T Consensus 217 ~qil~~ht------------dEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-------------------- 262 (519)
T KOG0293|consen 217 WQILQDHT------------DEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHFKLK-------------------- 262 (519)
T ss_pred hhhHhhCC------------CcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcceeee--------------------
Confidence 45677777 88999999 689999999999999999998765432221
Q ss_pred ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 252 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 252 (487)
. .+.+|..+|..+.||||.+++++| .|..+.+||+.++. +...+ -.++
T Consensus 263 -----------------------~-tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd-~~~~y------~~~~ 311 (519)
T KOG0293|consen 263 -----------------------K-TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD-LRHLY------PSGL 311 (519)
T ss_pred -----------------------e-eeecccCceEEEEECCCCCeEEecCchHheeeccCCcch-hhhhc------ccCc
Confidence 1 147999999999999999999999 88889999999654 33321 1235
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-
Q 011368 253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 331 (487)
Q Consensus 253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~- 331 (487)
...+.+++|.|+| ..+++|+.|+.+..||+..... ..+++- ....|.+++.++||+++++.
T Consensus 312 ~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~-----~~W~gv------------r~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 312 GFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNIL-----GNWEGV------------RDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCCcceeEEccCC-ceeEecCCCCcEEEecCCcchh-----hccccc------------ccceeEEEEEcCCCcEEEEEe
Confidence 6789999999999 9999999999999999987542 455551 02469999999999998864
Q ss_pred eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368 332 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 411 (487)
Q Consensus 332 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 411 (487)
.|..|++++..+ ...+..+..+.. ++++++|.|++++++.-.+..+++||++.. ..+..+.+
T Consensus 374 ~d~~i~l~~~e~-~~dr~lise~~~----------------its~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~G 435 (519)
T KOG0293|consen 374 VDKKIRLYNREA-RVDRGLISEEQP----------------ITSFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFG 435 (519)
T ss_pred cccceeeechhh-hhhhccccccCc----------------eeEEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhc
Confidence 689999999875 443434443332 269999999999999999999999999955 44666667
Q ss_pred cCCc--cccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCC-EEEEecCCe-EEE
Q 011368 412 GKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN-LIACANGNS-LFF 484 (487)
Q Consensus 412 ~~~~--v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~s~~~-~~i 484 (487)
|+.. +..-+|.. .+..+ +++|+.|+. .+| ..+..+..+.+|.+.|+.|+|+|..+ .+|+|++|+ +.|
T Consensus 436 hkq~~fiIrSCFgg-~~~~f-----iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGG-GNDKF-----IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred ccccceEEEeccCC-CCcce-----EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 7543 22333433 24455 899999999 999 66778888999999999999999875 578999776 889
Q ss_pred Ee
Q 011368 485 HY 486 (487)
Q Consensus 485 ~~ 486 (487)
|.
T Consensus 510 Wg 511 (519)
T KOG0293|consen 510 WG 511 (519)
T ss_pred ec
Confidence 95
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-30 Score=235.44 Aligned_cols=275 Identities=14% Similarity=0.177 Sum_probs=231.6
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.+|.+|.|+ |...+++++-.+|.|.|||.++..+.+..
T Consensus 14 dRVKsVd~H--PtePw~la~LynG~V~IWnyetqtmVksf---------------------------------------- 51 (794)
T KOG0276|consen 14 DRVKSVDFH--PTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------------------- 51 (794)
T ss_pred CceeeeecC--CCCceEEEeeecCeeEEEecccceeeeee----------------------------------------
Confidence 889999997 55679999999999999999988766542
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.-..-+|++..|-+--+.+++| +|..|++|+.++..+.. .+++|.+.|++++.+|.. .+++++
T Consensus 52 -------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--------~FeAH~DyIR~iavHPt~-P~vLts 115 (794)
T KOG0276|consen 52 -------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--------TFEAHSDYIRSIAVHPTL-PYVLTS 115 (794)
T ss_pred -------eecccchhhheeeeccceEEEecCCceEEEEecccceeeE--------EeeccccceeeeeecCCC-CeEEec
Confidence 4456778899998888999999 99999999999665433 478999999999999998 999999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
|+|-.|++||.+.+=.+ .++|++ |+..|.+++|+|. .+.+++++ |++|++|.+.. ..+..+
T Consensus 116 SDDm~iKlW~we~~wa~---~qtfeG-------------H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfT 178 (794)
T KOG0276|consen 116 SDDMTIKLWDWENEWAC---EQTFEG-------------HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFT 178 (794)
T ss_pred CCccEEEEeeccCceee---eeEEcC-------------cceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCcee
Confidence 99999999999876433 256666 5889999999985 55777776 79999999987 888999
Q ss_pred eecccccccccccccCCCCcceeeEEEEcC--CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 428 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 428 (487)
+.+|...+ .++++-+ |..+|++|++|.+|+|||.++. .+++++++|...|..+.|.|.
T Consensus 179 l~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~---- 238 (794)
T KOG0276|consen 179 LEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPE---- 238 (794)
T ss_pred eeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCC----
Confidence 99999865 6899887 4579999999999999999987 779999999999999999985
Q ss_pred cccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 429 RSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 429 ~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
++.+++|+.||. ++| .+..+...+.---.+|.+++-.+.+..+|+|.+++..+.+
T Consensus 239 ---lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 239 ---LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 445999999999 999 3333444444445689999999999999999998866554
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=5.6e-30 Score=217.08 Aligned_cols=292 Identities=15% Similarity=0.156 Sum_probs=224.8
Q ss_pred CCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (487)
Q Consensus 24 ~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (487)
...+..+|.+.|+|+.||.+|.+||||+.+|.|+||+..++... ..+...-
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~---------------------------~~~~~e~-- 148 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ---------------------------WKLDQEV-- 148 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE---------------------------EEeeccc--
Confidence 56677889999999999999999999999999999999988642 2232222
Q ss_pred cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
+.|.-+.|+ |.+..|++|+.||.+-+|.+.++...++
T Consensus 149 ----------~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~kv------------------------------- 185 (399)
T KOG0296|consen 149 ----------EDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCKV------------------------------- 185 (399)
T ss_pred ----------CceEEEEec--ccccEEEeecCCCcEEEEECCCcceeeE-------------------------------
Confidence 568889997 4688999999999999999998643333
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
+.+|..++++=.|.|+|+.++++ .||+|++|+..++.....+- ..-.....++.++
T Consensus 186 ----------------~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~-------~~e~~~~~~~~~~ 242 (399)
T KOG0296|consen 186 ----------------MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT-------QAEGLELPCISLN 242 (399)
T ss_pred ----------------ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec-------ccccCcCCccccc
Confidence 48999999999999999999999 99999999999665444331 1113456788899
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEE---EcCCCCEEEEEe-CCeEEE
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRD-YMNLKL 338 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~---~s~~~~~l~s~~-d~~i~i 338 (487)
..+ ..++.|+.++.+.+-+..+++.+ ..+.+ ..+.....++..+.++. ++..-.+.|+|+ ||+|.|
T Consensus 243 ~~~-~~~~~g~~e~~~~~~~~~sgKVv----~~~n~-----~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 243 LAG-STLTKGNSEGVACGVNNGSGKVV----NCNNG-----TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred ccc-ceeEeccCCccEEEEccccceEE----EecCC-----CCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence 888 89999999999999988888754 23221 01111122334444444 454555667775 799999
Q ss_pred EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 418 (487)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 418 (487)
||+.. .++.... .|+..+ +.+.|-+ ..+|++++.||.|+.||.++| ..+.++.+|...|..
T Consensus 313 yD~a~-~~~R~~c-~he~~V---------------~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 313 YDLAA-STLRHIC-EHEDGV---------------TKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILD 373 (399)
T ss_pred Eeccc-chhheec-cCCCce---------------EEEEEcC-cchheeeccCceEEeeecccc-ceEEEEecCchheeE
Confidence 99975 4444444 454433 6999998 789999999999999999999 669999999999999
Q ss_pred ceEeeCCccccccccceeeecccce-ecC
Q 011368 419 PILQAAPRARRSSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~g~~~~~-~~w 446 (487)
.+.+| +.++ +++++.|+. +++
T Consensus 374 f~ls~--~~~~-----vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 374 FALSP--QKRL-----VVTVSDDNTALVF 395 (399)
T ss_pred EEEcC--CCcE-----EEEecCCCeEEEE
Confidence 99998 5666 888888887 655
No 57
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4e-29 Score=237.23 Aligned_cols=301 Identities=13% Similarity=0.133 Sum_probs=210.5
Q ss_pred hhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE
Q 011368 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (487)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (487)
+|.+.||.. .+...|-..|+....++++..+++++.+.....|+..++... -.+...+. .+ ...
T Consensus 5 k~rh~~g~~--~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-------~~~~~~G~-----~~--~~~ 68 (493)
T PTZ00421 5 RFRHTQGVP--ARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-------LKHTDYGK-----LA--SNP 68 (493)
T ss_pred ccccccccc--CCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEE-------eecccccc-----CC--CCC
Confidence 566777733 344445567888888888777788888888888886554221 00000000 00 011
Q ss_pred eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (487)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
..+.+|. +.|.+++|+| .++.+|++|+.|++|++||+.++......
T Consensus 69 ~~l~GH~------------~~V~~v~fsP-~d~~~LaSgS~DgtIkIWdi~~~~~~~~~--------------------- 114 (493)
T PTZ00421 69 PILLGQE------------GPIIDVAFNP-FDPQKLFTASEDGTIMGWGIPEEGLTQNI--------------------- 114 (493)
T ss_pred ceEeCCC------------CCEEEEEEcC-CCCCEEEEEeCCCEEEEEecCCCcccccc---------------------
Confidence 3467888 9999999954 26789999999999999999765321100
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 252 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 252 (487)
..+... +.+|...|.+++|+|++ ++|++| .|++|++||++++. ... .+.+|
T Consensus 115 ------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~-------~l~~h 167 (493)
T PTZ00421 115 ------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVE-------VIKCH 167 (493)
T ss_pred ------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEE-------EEcCC
Confidence 011122 37899999999999975 689998 99999999999543 332 34678
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc-ceeEEEEcCCCCEEEEE
Q 011368 253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR 331 (487)
Q Consensus 253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~s~ 331 (487)
...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+..| .+ .+..+.|.+++..++++
T Consensus 168 ~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~~H-------------~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 168 SDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVEAH-------------ASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEecC-------------CCCcceEEEEcCCCCeEEEE
Confidence 8999999999999 99999999999999999987654 455553 32 34567899988877763
Q ss_pred e-----CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCCCce
Q 011368 332 D-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAG 405 (487)
Q Consensus 332 ~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~~~ 405 (487)
+ |+.|++||++....++.....+.... +....|++++++|++|+ .|+.|++||+.++...
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 2 58999999986455554443332211 13567899999999887 5999999999987543
Q ss_pred eEEEeccCCccccceEeeC
Q 011368 406 GITVEAGKNENRKPILQAA 424 (487)
Q Consensus 406 ~~~~~~~~~~v~~~~~~~~ 424 (487)
...-..+..+...+++.|.
T Consensus 296 ~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 296 FCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEeeccCCCCCcceEeccc
Confidence 3322335566777777774
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-30 Score=208.07 Aligned_cols=239 Identities=15% Similarity=0.195 Sum_probs=195.4
Q ss_pred cCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368 202 AHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 279 (487)
Q Consensus 202 ~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 279 (487)
.-.+.+.+++|+++ .+.++++ .||+++|||+.....++ +.+++|...|.++.|++.....+++++.|++|+
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi-------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI-------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch-------hHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence 34677899999985 4556666 99999999977555543 457899999999999987668889999999999
Q ss_pred EEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEE-eCCeEEEEeCCCCCceeeeeeccccc
Q 011368 280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHL 357 (487)
Q Consensus 280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 357 (487)
+|+...+..+ ++|.+ |..-|...+|+|. ..+++++ +|+.+++||++..++.+. +..|...
T Consensus 131 LW~~~r~~Sv----~Tf~g-------------h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~E 192 (311)
T KOG0277|consen 131 LWDPNRPNSV----QTFNG-------------HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSE 192 (311)
T ss_pred eecCCCCcce----EeecC-------------CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccce
Confidence 9999876655 66666 4889999999996 4566666 479999999998777666 8888754
Q ss_pred ccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccccccee
Q 011368 358 RPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT 436 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 436 (487)
+ .++.|+. +...|+||+.|+.|++||+++-+..+.++.+|.-.|+.+.++|.. ..+ |+
T Consensus 193 i---------------l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-~~l-----La 251 (311)
T KOG0277|consen 193 I---------------LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-ASL-----LA 251 (311)
T ss_pred e---------------EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcch-hhH-----hh
Confidence 3 5899997 677899999999999999999888899999999999999999963 333 89
Q ss_pred eecccce-ecCCCC---CccccccccCCCeEEEEEcC-CCCEEEEec-CCeEEEEe
Q 011368 437 RGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHP-TTNLIACAN-GNSLFFHY 486 (487)
Q Consensus 437 ~g~~~~~-~~w~~~---~~~~~~~~~~~~v~~~~~sp-d~~~la~~s-~~~~~i~~ 486 (487)
+++.|.. ++|+.. ..+.....|+.-|..+.||+ +..++|..+ +..+|||+
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 9999999 999443 23344457888899999998 456788888 55699997
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.2e-30 Score=243.60 Aligned_cols=248 Identities=20% Similarity=0.340 Sum_probs=206.8
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+|...|++++|+|+++++++|+.|++|+|||+... .+.++++++|.
T Consensus 199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--------------------------~~~~~~l~gH~------ 246 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--------------------------GRNLKTLKGHS------ 246 (456)
T ss_pred ccccccceeeeEECCCCcEEEEecCCceEEEeeccCC--------------------------CeEEEEecCCC------
Confidence 3579999999999999999999999999999998322 23478999999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|++++| +++++++++|+.|++|++||+.+++....
T Consensus 247 ------~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~~~----------------------------------- 283 (456)
T KOG0266|consen 247 ------TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECVRK----------------------------------- 283 (456)
T ss_pred ------CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEEEe-----------------------------------
Confidence 89999999 57789999999999999999999876654
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCCCCCC--cEEEEEEec
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTE--VITSAEFHP 263 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~--~v~~v~~~p 263 (487)
+.+|.+.|++++|+++++.|+++ .|+.|++||+.++.. +.+. +.++.. .++++.|+|
T Consensus 284 ------------l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 284 ------------LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL-------LSGAENSAPVTSVQFSP 344 (456)
T ss_pred ------------eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec-------ccCCCCCCceeEEEECC
Confidence 48999999999999999999999 999999999995542 2222 233333 599999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR 342 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~ 342 (487)
++ .++++++.|+.+++||++.+... ..+.+|... ...+.+...++.++++++|+ |+.|++||+.
T Consensus 345 ~~-~~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 345 NG-KYLLSASLDRTLKLWDLRSGKSV----GTYTGHSNL----------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CC-cEEEEecCCCeEEEEEccCCcce----eeecccCCc----------ceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 99 99999999999999999988765 666665221 01344555688999999986 5999999999
Q ss_pred CCCceeeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeC
Q 011368 343 MDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG 400 (487)
Q Consensus 343 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~ 400 (487)
+ +..+..+.+| ...+ ..+.++|...++++++ .|+.+++|...
T Consensus 410 s-~~~~~~l~~h~~~~~---------------~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 410 S-GGILQRLEGHSKAAV---------------SDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred c-cchhhhhcCCCCCce---------------eccccCCCcCeeeecCcCCCceEEEecCC
Confidence 7 8888888888 4432 4899999999999998 78999999764
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=214.24 Aligned_cols=311 Identities=15% Similarity=0.181 Sum_probs=235.6
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhh-hccccccccCCCcceeEeeecCCCcccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSEL-EKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
....|..++.+.+|||||.++|+|+.|-+|+|.|++..-.. ...+++ .+. ....-..+++|-.|.
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak----s~~~em~~~~------~qa~hPvIRTlYDH~---- 172 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK----SKPKEMISGD------TQARHPVIRTLYDHV---- 172 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh----cchhhhccCC------cccCCceEeehhhcc----
Confidence 34569999999999999999999999999999998732110 000000 000 011123678889998
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
+.|+++.|+ |....|++++.|++|+++|+..-..++-.
T Consensus 173 --------devn~l~FH--Pre~ILiS~srD~tvKlFDfsK~saKrA~-------------------------------- 210 (430)
T KOG0640|consen 173 --------DEVNDLDFH--PRETILISGSRDNTVKLFDFSKTSAKRAF-------------------------------- 210 (430)
T ss_pred --------Ccccceeec--chhheEEeccCCCeEEEEecccHHHHHHH--------------------------------
Confidence 889999996 56789999999999999999764332210
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
+ ......+|.+++|+|.|.+|+.| +-.++++||+++ -+++..- ..-.+|.+.|+++.+++.
T Consensus 211 -----------K--~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T-~Qcfvsa----nPd~qht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 211 -----------K--VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT-YQCFVSA----NPDDQHTGAITQVRYSST 272 (430)
T ss_pred -----------H--HhhccceeeeEeecCCCceEEEecCCCceeEEeccc-eeEeeec----CcccccccceeEEEecCC
Confidence 1 13456789999999999999999 889999999994 4555331 234679999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecc-cccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIR 342 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~ 342 (487)
+ ++.++++.||.|+|||--+++++ +++.. |. ...|.+..|..+|+|+++. .|..+++|.+.
T Consensus 273 ~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~AH~------------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 273 G-SLYVTASKDGAIKLWDGVSNRCV----RTIGNAHG------------GSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred c-cEEEEeccCCcEEeeccccHHHH----HHHHhhcC------------CceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 9 99999999999999999888765 44432 21 3579999999999999975 57999999999
Q ss_pred CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKNENRKPIL 421 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 421 (487)
+ ++++..+.+....-. ... .+...|+....|++.-.+ .+.+.-||.++.......--+|.++++.+.-
T Consensus 336 t-~R~l~~YtGAg~tgr--------q~~--rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 336 T-GRMLKEYTGAGTTGR--------QKH--RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVH 404 (430)
T ss_pred C-CceEEEEecCCcccc--------hhh--hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence 8 899988876532110 000 035667777777765543 4789999999987777777799999999999
Q ss_pred eeCCccccccccceeeecccce-ecC
Q 011368 422 QAAPRARRSSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 422 ~~~~~~~~~~~~~l~~g~~~~~-~~w 446 (487)
+|..+ ++++++.|.. +.|
T Consensus 405 SP~~p-------~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 405 SPVEP-------AFMTCSDDFRARFW 423 (430)
T ss_pred CCCCC-------ceeeecccceeeee
Confidence 98532 3899999998 999
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-30 Score=209.35 Aligned_cols=243 Identities=19% Similarity=0.291 Sum_probs=200.4
Q ss_pred cCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
.+.+..++|+++. +.+++++.||+++|||... ...++..++.|+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------~s~Pi~~~kEH~--------- 104 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------PSKPIHKFKEHK--------- 104 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------CCcchhHHHhhh---------
Confidence 6789999999965 6788888999999999432 223578889998
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..|.++.|.+ ..+..+++++.|++|++|+....+....
T Consensus 105 ---~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-------------------------------------- 142 (311)
T KOG0277|consen 105 ---REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQT-------------------------------------- 142 (311)
T ss_pred ---hheEEecccc-ccceeEEeeccCCceEeecCCCCcceEe--------------------------------------
Confidence 8899999975 5677888899999999999987664433
Q ss_pred eccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.+|...|+...|+| ..++++++ .|+.+++||++..++.+. ++.|...|.|+.|+.-...+
T Consensus 143 ---------f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 143 ---------FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred ---------ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEeccceeEeecccccCCcE
Confidence 389999999999999 57788888 999999999998776554 46888999999999876689
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEEEeCCCCCc
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~iwd~~~~~~ 346 (487)
+++|+.|+.|+.||+++-+.. +..+.+ |.-.|+.+.|||... .|++++ |-+++|||...+..
T Consensus 206 l~Tg~vd~~vr~wDir~~r~p---l~eL~g-------------h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRTP---LFELNG-------------HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred EEecCCCceEEEEehhhcccc---ceeecC-------------CceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 999999999999999985422 234444 588999999999754 667777 59999999987677
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEe
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~ 399 (487)
.+.+...|...+ ..+.||+ ++.++|+.+.|..++||+.
T Consensus 270 ~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 AIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhccceEE---------------eccccccccCceeeecccccceeeecc
Confidence 778888887765 5788887 6789999999999999984
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=7.4e-30 Score=207.48 Aligned_cols=291 Identities=13% Similarity=0.158 Sum_probs=227.9
Q ss_pred CccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
....+|..+++.+.++.+|.+|.+++.|.++.||-..+++. +.++.||.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---------------------------lGty~GHt---- 52 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---------------------------LGTYDGHT---- 52 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce---------------------------eeeecCCC----
Confidence 44567999999999999999999999999999999877765 58999999
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
++|.++.. +.+.+++++|+.|.++++||+.+|+.+...+ ....+..+.|...+...+++.........
T Consensus 53 --------GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~ 120 (327)
T KOG0643|consen 53 --------GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTC 120 (327)
T ss_pred --------ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcce
Confidence 99999998 5788899999999999999999998776544 33455566666555555555443322222
Q ss_pred eeeeee---------ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc
Q 011368 186 YHLEWT---------ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 255 (487)
Q Consensus 186 ~~~~~~---------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 255 (487)
....++ ...+.... ..+.+.++.+-|.|-+++|++| .||.|.+||++++.+.+. .-+.|...
T Consensus 121 ~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~-------s~~~h~~~ 192 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD-------SDEEHSSK 192 (327)
T ss_pred EEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee-------chhhhccc
Confidence 222222 23334333 6677999999999999999999 999999999996655554 34678889
Q ss_pred EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C
Q 011368 256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y 333 (487)
Q Consensus 256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d 333 (487)
|+.+.++|+. .++++++.|.+-++||.++-+.+ +++.. ..+|++.+++|...+++.|+ +
T Consensus 193 Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~t--------------e~PvN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 193 INDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTT--------------ERPVNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred cccccccCCc-ceEEecccCccceeeeccceeeE----EEeee--------------cccccceecccccceEEecCCce
Confidence 9999999999 99999999999999999997765 77777 67999999999887777653 1
Q ss_pred -CeEE------------EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 334 -MNLK------------LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 334 -~~i~------------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
..|. +|++-. .+.+..+++|-+++ ++++|+|+|+..++|+.||.|++....
T Consensus 254 A~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPI---------------NsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 254 AMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPI---------------NSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeeeeeecccccchhhhHHHHHH-HHHhccccccccCc---------------ceeEECCCCcccccCCCCceEEEEEec
Confidence 2222 233322 34566778888866 699999999999999999999998776
Q ss_pred CC
Q 011368 401 VG 402 (487)
Q Consensus 401 ~~ 402 (487)
..
T Consensus 318 ~~ 319 (327)
T KOG0643|consen 318 SN 319 (327)
T ss_pred cc
Confidence 43
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.8e-29 Score=202.80 Aligned_cols=285 Identities=14% Similarity=0.160 Sum_probs=220.5
Q ss_pred eecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccc
Q 011368 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (487)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (487)
.++||+ .+++.|.| +.+|.+|.+++.|.+..+|--.+|+.+..
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlGt----------------------- 47 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLGT----------------------- 47 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence 478888 99999999 68999999999999999999877775554
Q ss_pred ccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368 176 EHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 254 (487)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 254 (487)
..+|.+.|+|+..+.+.+.+++| .|.++++||++++++.. .+ ....
T Consensus 48 ------------------------y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la-~~--------k~~~ 94 (327)
T KOG0643|consen 48 ------------------------YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA-TW--------KTNS 94 (327)
T ss_pred ------------------------ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE-Ee--------ecCC
Confidence 28999999999999999999999 99999999999665443 32 2456
Q ss_pred cEEEEEEecCCCCEEEEEeC-----CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368 255 VITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 329 (487)
+|..+.|+++| ++++.+.+ .+.|.++|++....-. ....+...+.-+...++.+.|.|-+++|+
T Consensus 95 ~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~----------~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 95 PVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI----------DSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred eeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh----------cccCceEEecCCccceeeeeecccCCEEE
Confidence 79999999999 88877765 4689999998543100 00000111222357899999999999999
Q ss_pred EEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEE
Q 011368 330 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 408 (487)
Q Consensus 330 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~ 408 (487)
+|. +|.|.+||+++....+...+.|...+ +++++++|..++++++.|.+-++||+.+- ..+++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kt 227 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKT 227 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccceeeeccce-eeEEE
Confidence 995 59999999998556677777777654 69999999999999999999999999876 32333
Q ss_pred EeccCCccccceEeeCCccccccccceeeecccceecC----CCC------------CccccccccCCCeEEEEEcCCCC
Q 011368 409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN----SSS------------GHHELSYNLSSKLLHLAWHPTTN 472 (487)
Q Consensus 409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w----~~~------------~~~~~~~~~~~~v~~~~~spd~~ 472 (487)
+ ....|++..+++|..+-. ++.|+.+-+.+- +.+ +.+....+|-++|+++||||||+
T Consensus 228 y-~te~PvN~aaisP~~d~V------ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk 300 (327)
T KOG0643|consen 228 Y-TTERPVNTAAISPLLDHV------ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK 300 (327)
T ss_pred e-eecccccceecccccceE------EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence 3 456789999999974443 456665544332 111 33345568889999999999999
Q ss_pred EEEEecCCe-EEE
Q 011368 473 LIACANGNS-LFF 484 (487)
Q Consensus 473 ~la~~s~~~-~~i 484 (487)
..++|+.|+ +.+
T Consensus 301 sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 301 SYSSGGEDGYVRL 313 (327)
T ss_pred ccccCCCCceEEE
Confidence 999999887 443
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.7e-29 Score=240.54 Aligned_cols=314 Identities=13% Similarity=0.230 Sum_probs=223.5
Q ss_pred cCcEEEEEEcCCCCEEEEEe--cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
...|.+++.+|||..+|||+ .|+.++||+.+.-- .+.+.... . -.+.+.+...|.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl---------~~~~~~~~----~--l~k~l~~m~~h~-------- 69 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL---------DEKEEKNE----N--LPKHLCTMDDHD-------- 69 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeecccccc---------chhhhhhc----c--cchhheeecccc--------
Confidence 45699999999999999999 99999999965221 00000000 0 122355666777
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+.|+|++| ++||++||+|+.|+.|.||........... .+ .......+.
T Consensus 70 ----~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f---------------------gs----~g~~~~vE~ 118 (942)
T KOG0973|consen 70 ----GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVF---------------------GS----TGGAKNVES 118 (942)
T ss_pred ----CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccc---------------------cc----cccccccce
Confidence 99999999 689999999999999999998741100000 00 000011111
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
| ++... +.+|...|.+++|+|++.+++++ .|++|.+|+..+. ...+ .+.+|.+.|-.+.|+|-| ++
T Consensus 119 w---k~~~~-l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~-------vl~~H~s~VKGvs~DP~G-ky 185 (942)
T KOG0973|consen 119 W---KVVSI-LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLK-------VLRGHQSLVKGVSWDPIG-KY 185 (942)
T ss_pred e---eEEEE-EecCCCccceeccCCCccEEEEecccceEEEEccccc-eeee-------eeecccccccceEECCcc-Ce
Confidence 2 22233 37899999999999999999999 9999999999966 4444 368999999999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-----CCeEEEEeCCC
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----YMNLKLWDIRM 343 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-----d~~i~iwd~~~ 343 (487)
||+-+.|++|++|++.+-... +.+..+.+ . ..-...+..+.|||||++|++.. ...+.|.+-.+
T Consensus 186 ~ASqsdDrtikvwrt~dw~i~----k~It~pf~-~------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSDWGIE----KSITKPFE-E------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred eeeecCCceEEEEEcccceee----Eeeccchh-h------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 999999999999997664333 33333110 0 11135688999999999999852 26788888765
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcC-----CCC------------EEEEEcCCCcEEEEEeCCCCcee
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-----DGL------------HFATGSYSNLLRIFSHGVGSAGG 406 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----d~~------------~l~sg~~dg~i~iwd~~~~~~~~ 406 (487)
.+.-..+-+|..++ ..+.|+| +.+ .+|+|+.|++|-||.....+.
T Consensus 255 -Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-- 316 (942)
T KOG0973|consen 255 -WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-- 316 (942)
T ss_pred -ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc--
Confidence 67777888998865 5788887 111 567888888888888754422
Q ss_pred EEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEE
Q 011368 407 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFH 485 (487)
Q Consensus 407 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~ 485 (487)
+.....-+...|.+++|+|||-.|.++|.|+ ++++
T Consensus 317 --------------------------------------------l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 317 --------------------------------------------LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred --------------------------------------------hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 1112223556899999999999988888655 6655
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.3e-30 Score=219.16 Aligned_cols=292 Identities=19% Similarity=0.274 Sum_probs=223.4
Q ss_pred hhhhcCCCCCCccccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE
Q 011368 16 CSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (487)
Q Consensus 16 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (487)
+...|..+-.+.+-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...++ .
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~---------------------------~ 102 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC---------------------------I 102 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh---------------------------h
Confidence 33445555556678899999999999987 7899999999999999986655 4
Q ss_pred eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (487)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
.++++|. +.|..|++. . ..+++++.|++|+.|.++... ...
T Consensus 103 ~~f~AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p-~~t---------------------- 143 (433)
T KOG0268|consen 103 RTFKAHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP-LHT---------------------- 143 (433)
T ss_pred heeeccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc-cee----------------------
Confidence 8899999 999999994 2 678999999999999987631 111
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 254 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 254 (487)
.-....+..+.-+..+..+++|. ..|.|||..... ++. .+.-..+
T Consensus 144 --------------------------ilg~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~R~~-Pv~-------smswG~D 188 (433)
T KOG0268|consen 144 --------------------------ILGKSVYLGIDHHRKNSVFATCG-EQIDIWDEQRDN-PVS-------SMSWGAD 188 (433)
T ss_pred --------------------------eeccccccccccccccccccccC-ceeeecccccCC-ccc-------eeecCCC
Confidence 12244566676666677777772 268899998433 332 2344456
Q ss_pred cEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368 255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 333 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d 333 (487)
.|.++.|+|....+|+++..|+.|.|||++++..+...+..+ .-+.|+|+|.+-.+++++ |
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m------------------RTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM------------------RTNTICWNPEAFNFVAANED 250 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec------------------cccceecCccccceeecccc
Confidence 799999999886788888899999999999988764333333 348899999766666664 6
Q ss_pred CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 413 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 413 (487)
..++.||++....++....+|...+ .++.|||.|+-+++||.|.+|+||.++.+...
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR-------- 307 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR-------- 307 (433)
T ss_pred ccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEeecCCCcch--------
Confidence 9999999998788888888888754 69999999999999999999999999876321
Q ss_pred CccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 414 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 414 ~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
+-. ...--..|.+|.||.|.+++++||+|+ +.+|.|
T Consensus 308 ------------diY--------------------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 308 ------------DIY--------------------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ------------hhh--------------------------hHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 000 011123678999999999999999664 888865
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-28 Score=227.95 Aligned_cols=253 Identities=16% Similarity=0.247 Sum_probs=207.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
-..|.++|..++|+|++.++++|+.|-.|+||+..+.++ +.++.||-
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc---------------------------lftL~GHl------ 93 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC---------------------------LFTLLGHL------ 93 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEeccccee---------------------------hhhhcccc------
Confidence 346899999999999999999999999999999886655 58899998
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+-|..+.|+ +.-.+++++|.|.+|+||+..+++++..
T Consensus 94 ------DYVRt~~FH--heyPWIlSASDDQTIrIWNwqsr~~iav----------------------------------- 130 (1202)
T KOG0292|consen 94 ------DYVRTVFFH--HEYPWILSASDDQTIRIWNWQSRKCIAV----------------------------------- 130 (1202)
T ss_pred ------ceeEEeecc--CCCceEEEccCCCeEEEEeccCCceEEE-----------------------------------
Confidence 889999996 5677999999999999999999987766
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCce----e-------------EEe---e-cC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC----F-------------NIV---D-MK 245 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~----~-------------~~~---~-~~ 245 (487)
+.+|...|.|.+|+|....++++ -|.+|++||+..-.+. . .++ + .-
T Consensus 131 ------------ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 131 ------------LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred ------------EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 48999999999999999999999 9999999998731100 0 000 0 00
Q ss_pred CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC
Q 011368 246 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 325 (487)
Q Consensus 246 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~ 325 (487)
.+.+++|...|+.++|+|.- .+|++|++|+.|++|.+...+ .|+. ..+.+|.+.|.++.|+|..
T Consensus 199 K~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetK-------aWEv--------DtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETK-------AWEV--------DTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred eeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccc-------ceee--------hhhhcccCCcceEEecCcc
Confidence 13578999999999999998 999999999999999987653 3333 2356789999999999999
Q ss_pred CEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 326 QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 326 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+++++. .|++|+|||+.. ...+..++..... .+.++-+|..+++++| .|+-+.||.++.
T Consensus 263 ~lIlSnsEDksirVwDm~k-Rt~v~tfrrendR---------------FW~laahP~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 263 DLILSNSEDKSIRVWDMTK-RTSVQTFRRENDR---------------FWILAAHPELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred ceeEecCCCccEEEEeccc-ccceeeeeccCCe---------------EEEEEecCCcceeeee-cCCceEEEEEcc
Confidence 999986 579999999986 8888888755442 1689999999877755 455567888874
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.4e-30 Score=220.43 Aligned_cols=283 Identities=20% Similarity=0.233 Sum_probs=223.9
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...|..+.|-++...|++|+.|..|++|++..++. ..+.++.|-.
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------------~~~~tLaGs~------ 219 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------------ELISTLAGSL------ 219 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------------hhhhhhhccC------
Confidence 445888999999999989999999999999999877642 2356677776
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
++|+++.| .+++.++++++.|+.+++|++...+....
T Consensus 220 ------g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T----------------------------------- 256 (459)
T KOG0288|consen 220 ------GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT----------------------------------- 256 (459)
T ss_pred ------CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh-----------------------------------
Confidence 88999999 68899999999999999999998876544
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.+|.+.|+++.|......+++| .|.+|++||+.. ..|.+.+ + ..+.+..+..+ .
T Consensus 257 ------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~------l--~~S~cnDI~~~--~- 312 (459)
T KOG0288|consen 257 ------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKTV------L--PGSQCNDIVCS--I- 312 (459)
T ss_pred ------------hcccccceeeehhhccccceeeccccchhhhhhhhh-hheeccc------c--ccccccceEec--c-
Confidence 48999999999998776668899 999999999994 5555432 1 22334555555 3
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
..+++|..|+.||+||.++.... ..... .+.|+++..+++|..|.+++ |.++.+.|+++ .
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~ 373 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT-K 373 (459)
T ss_pred eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCCCceeeeeccc-c
Confidence 67899999999999999987754 55555 36899999999999888875 69999999997 6
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC--ccccceEee
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN--ENRKPILQA 423 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~ 423 (487)
.....+.+.... +--+.+.+.|||++.|+++||.||.|+||++.+++. ...++.... .|.+++|.|
T Consensus 374 eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl-E~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 374 EIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL-EKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred cEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCceE-EEEeccCCCCcceEEEEEcC
Confidence 666666654432 111236899999999999999999999999999854 444544444 499999998
Q ss_pred CCccccccccceeeecccce-ecC
Q 011368 424 APRARRSSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g~~~~~-~~w 446 (487)
. |.. |++++.+.. .+|
T Consensus 442 s--G~~-----Llsadk~~~v~lW 458 (459)
T KOG0288|consen 442 S--GSG-----LLSADKQKAVTLW 458 (459)
T ss_pred C--Cch-----hhcccCCcceEec
Confidence 4 444 778887777 777
No 68
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.5e-28 Score=213.17 Aligned_cols=270 Identities=17% Similarity=0.271 Sum_probs=207.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-cCCCccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLK 108 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~ 108 (487)
.|.-+|.|++++|++++.++++.+++|.-|++.+++.. +..++.+.- ....+.....- ++|.
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~------~~i~~~~ev----~k~~~~~~k~~r~~h~------- 202 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD------RYIIERDEV----LKSHGNPLKESRKGHV------- 202 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCccc------ccccccchh----hhhccCCCCccccccc-------
Confidence 47889999999999999999999999999999988743 111111000 00000011111 2555
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++. ++|+++|++|+.|..|.||+.++.+..+.
T Consensus 203 -----keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~------------------------------------ 239 (479)
T KOG0299|consen 203 -----KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV------------------------------------ 239 (479)
T ss_pred -----ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc------------------------------------
Confidence 77999999 68999999999999999999999875543
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+.+|.+.|.+++|-.....++++ .|++|++|+++... .+ .++.+|.+.|..+.-..-+ .
T Consensus 240 -----------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~v-------etlyGHqd~v~~IdaL~re-R 299 (479)
T KOG0299|consen 240 -----------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YV-------ETLYGHQDGVLGIDALSRE-R 299 (479)
T ss_pred -----------ccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HH-------HHHhCCccceeeechhccc-c
Confidence 48999999999998877788887 99999999998333 22 2568999999999988877 7
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~ 346 (487)
.+.+|+.|+++++|++..... .+|.+ |.+.+.|++|-.+ ..+++|+| |.|.+|++.. .+
T Consensus 300 ~vtVGgrDrT~rlwKi~eesq-----lifrg-------------~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~K-Kk 359 (479)
T KOG0299|consen 300 CVTVGGRDRTVRLWKIPEESQ-----LIFRG-------------GEGSIDCVAFIND-EHFVSGSDNGSIALWSLLK-KK 359 (479)
T ss_pred eEEeccccceeEEEeccccce-----eeeeC-------------CCCCeeeEEEecc-cceeeccCCceEEEeeecc-cC
Confidence 777888999999999954321 34555 4678999999865 46777765 9999999987 88
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
++.+.+...+..+.......+ +++++++..|...++|+|+.+|.|++|.+..+
T Consensus 360 plf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 888887665554433222222 46689999999999999999999999999987
No 69
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-27 Score=197.84 Aligned_cols=269 Identities=17% Similarity=0.233 Sum_probs=203.4
Q ss_pred cCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCC-cCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGG-KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 32 ~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.+.|.+|+||| ...++++|+-||+||+|+++.. ... -+....|.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--------------------------~ka~~~~~-------- 72 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--------------------------PKAQQSHD-------- 72 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCccc--------------------------chhhhccC--------
Confidence 56799999999 5567778999999999999863 221 13344566
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
++|.+++| +.+|..+++|+.|+.+++||+.+++...+
T Consensus 73 ----~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v------------------------------------- 109 (347)
T KOG0647|consen 73 ----GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV------------------------------------- 109 (347)
T ss_pred ----CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee-------------------------------------
Confidence 99999999 68999999999999999999999987665
Q ss_pred eeccceeeeecccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
..|..+|.++.|-+.. ..|++| .|++|+.||.+. ...+..++ ..+.++++..- .
T Consensus 110 -----------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~--------LPeRvYa~Dv~--~- 166 (347)
T KOG0647|consen 110 -----------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQ--------LPERVYAADVL--Y- 166 (347)
T ss_pred -----------eecccceeEEEEecCCCcceeEecccccceeecccCC-CCeeeeee--------ccceeeehhcc--C-
Confidence 7899999999996644 489999 999999999994 44444432 23556766653 3
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.+++++..++.|.+|+++++. ..++.+ .+| -.-.+++++..+|.+..+.|+ .|.+-|..+.. .
T Consensus 167 pm~vVata~r~i~vynL~n~~------te~k~~-~Sp--------Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~-~ 230 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPP------TEFKRI-ESP--------LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD-P 230 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCc------chhhhh-cCc--------ccceeeEEEEEecCCceEeeeecceEEEEecCC-C
Confidence 678999999999999998865 233331 111 134789999988887777776 59999998875 4
Q ss_pred --ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 346 --TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 346 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
+.-..|+.|..... ..+.++.|.+++|+|.-..|+|+|.||++.+||-... ..+.+.+.|..+|++..|..
T Consensus 231 ~~~~nFtFkCHR~~~~------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 231 NPKDNFTFKCHRSTNS------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFNR 303 (347)
T ss_pred CccCceeEEEeccCCC------CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEecC
Confidence 44566777875321 2235778899999999999999999999999997654 33555555666666655554
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.6e-27 Score=216.85 Aligned_cols=241 Identities=27% Similarity=0.402 Sum_probs=199.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...+.++.|+|++++|++++.||.|++|++.+++. ...+..|.
T Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---------------------------~~~~~~~~------ 93 (289)
T cd00200 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC---------------------------VRTLTGHT------ 93 (289)
T ss_pred EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc---------------------------eEEEeccC------
Confidence 345778899999999999999999999999999987543 35667777
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.++.|+ +++.++++++.|+.|++||+.+++....
T Consensus 94 ------~~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------------------- 130 (289)
T cd00200 94 ------SYVSSVAFS--PDGRILSSSSRDKTIKVWDVETGKCLTT----------------------------------- 130 (289)
T ss_pred ------CcEEEEEEc--CCCCEEEEecCCCeEEEEECCCcEEEEE-----------------------------------
Confidence 789999995 5677888888899999999986654432
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+..|...+.+++|+|++++++++ .|+.|++||++... ... .+..|...+.++.|+|++
T Consensus 131 ------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~-------~~~~~~~~i~~~~~~~~~- 189 (289)
T cd00200 131 ------------LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVA-------TLTGHTGEVNSVAFSPDG- 189 (289)
T ss_pred ------------eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cce-------eEecCccccceEEECCCc-
Confidence 25788899999999999999998 69999999998433 332 234677789999999998
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
..+++++.++.|++||++.++.. ..+.. |...+.++.|+|++.++++++ ++.|++||+.+ +
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~ 251 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCL----GTLRG-------------HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-G 251 (289)
T ss_pred CEEEEecCCCcEEEEECCCCcee----cchhh-------------cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC-c
Confidence 89999999999999999886543 33433 356899999999998999887 79999999986 7
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd 398 (487)
.....+..|...+ .+++|+|++++|++++.||.|++|+
T Consensus 252 ~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ECVQTLSGHTNSV---------------TSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eeEEEccccCCcE---------------EEEEECCCCCEEEEecCCCeEEecC
Confidence 7777787666543 5999999999999999999999996
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=196.22 Aligned_cols=244 Identities=19% Similarity=0.234 Sum_probs=202.8
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
...+..|+ ++|..++| +-+|++.++++.|++|++|+...+.+++.
T Consensus 10 ~~~l~~~q------------gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt--------------------- 54 (307)
T KOG0316|consen 10 LSILDCAQ------------GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT--------------------- 54 (307)
T ss_pred ceeecccc------------cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee---------------------
Confidence 46677888 99999999 68999999999999999999999886655
Q ss_pred ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 252 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 252 (487)
| .+|...|..++.+.|...|++| .|..+.+||+++++. . +++.+|
T Consensus 55 -------------------------Y-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv-~-------Rr~rgH 100 (307)
T KOG0316|consen 55 -------------------------Y-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV-D-------RRFRGH 100 (307)
T ss_pred -------------------------e-cCCCceeeeccccccccccccCCCCceEEEEEcccCee-e-------eecccc
Confidence 3 8999999999999999999999 999999999996554 3 357899
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
.+.|+.+.|+.+. ..+++|+.|..+++||.++.. ..+++++.. -...|.++..+ +..|++|+
T Consensus 101 ~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s--~ePiQilde-------------a~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 101 LAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS--FEPIQILDE-------------AKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred cceeeEEEecCcc-eEEEeccccceeEEEEcccCC--CCccchhhh-------------hcCceeEEEec--ccEEEeec
Confidence 9999999999998 999999999999999999864 223344443 24678888886 45777775
Q ss_pred -CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368 333 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 411 (487)
Q Consensus 333 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 411 (487)
||+++.||++. +....-+-+|.- ++++|++|++..++++-|+++++.|-.+| +.+...++
T Consensus 163 ~DGtvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkG 223 (307)
T KOG0316|consen 163 VDGTVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKG 223 (307)
T ss_pred cCCcEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcc
Confidence 79999999997 665544444432 69999999999999999999999999998 56889999
Q ss_pred cCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368 412 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 412 ~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
|.+.-..+.......... .++|++||. .+|+.
T Consensus 224 hkn~eykldc~l~qsdth-----V~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQSDTH-----VFSGSEDGKVYFWDL 256 (307)
T ss_pred cccceeeeeeeeccccee-----EEeccCCceEEEEEe
Confidence 998777666655444445 899999999 99954
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-28 Score=222.57 Aligned_cols=240 Identities=18% Similarity=0.284 Sum_probs=205.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC-CCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 110 (487)
.+.|+++.|+++|.+||+|..+|.|.|||....+. ...+.+ |.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~---------------------------~~~~~~~h~--------- 260 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK---------------------------TRTLRGSHA--------- 260 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc---------------------------cccccCCcC---------
Confidence 57899999999999999999999999999887765 356666 77
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..|.+++|. +..+.+|+.|+.|..+|++..+....
T Consensus 261 ---~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-------------------------------------- 295 (484)
T KOG0305|consen 261 ---SRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-------------------------------------- 295 (484)
T ss_pred ---ceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh--------------------------------------
Confidence 899999993 56888999999999999987653211
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
.+.+|...|..+.|++|++++|+| .|+.+.|||........ .+.+|...|..++|+|-...+|
T Consensus 296 --------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--------~~~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 296 --------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--------TFTEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred --------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE--------EEeccceeeeEeeeCCCccCce
Confidence 137899999999999999999999 99999999996444433 3578999999999999877899
Q ss_pred EEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e--CCeEEEEeCCCC
Q 011368 270 AYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D--YMNLKLWDIRMD 344 (487)
Q Consensus 270 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~--d~~i~iwd~~~~ 344 (487)
|+|+ .|+.|++||..++..+ ..... ...|..+.|++..+.|+++ + ++.|.||+..+
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps- 420 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS- 420 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-
Confidence 9976 4999999999998765 33333 4789999999999878775 2 48999999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+.+..+.+|...+ ..+++||||..+++|+.|.++++|++-..
T Consensus 421 ~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 88899999999865 58999999999999999999999999864
No 73
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.9e-27 Score=244.12 Aligned_cols=257 Identities=13% Similarity=0.184 Sum_probs=193.5
Q ss_pred ccccCcEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
+.+...|.+++|++. +.+||+++.||+|+|||+.+++. +..+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---------------------------~~~~~~H~------ 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---------------------------VTEMKEHE------ 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---------------------------EEEecCCC------
Confidence 334567999999874 78999999999999999886653 57788998
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+.|.+++|+| +++.+|++|+.|++|++||+.++.....
T Consensus 576 ------~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~----------------------------------- 613 (793)
T PLN00181 576 ------KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGT----------------------------------- 613 (793)
T ss_pred ------CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEE-----------------------------------
Confidence 8999999964 4678999999999999999987764432
Q ss_pred eeeeccceeeeecccCCCceeEEEeC-CCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+. +...|.++.|+ +++.+|++| .|+.|++||++....... .+.+|...|.++.|. ++
T Consensus 614 ------------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~-------~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 614 ------------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC-------TMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred ------------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce-------EecCCCCCEEEEEEe-CC
Confidence 12 23578899995 579999999 999999999985443332 346899999999997 55
Q ss_pred CCEEEEEeCCCeEEEEEccCCccc--cccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR 342 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~ 342 (487)
.+|++++.|+.|++||++.+... ...+..+ .+|...+..+.|+|++.+|++|+ |+.|++|+..
T Consensus 673 -~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-------------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 673 -STLVSSSTDNTLKLWDLSMSISGINETPLHSF-------------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred -CEEEEEECCCEEEEEeCCCCccccCCcceEEE-------------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 79999999999999999854210 0112333 44678899999999999999986 5999999987
Q ss_pred CCCceeeeeeccc-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 343 MDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 343 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
. ..++..+.... ..+..+. . .+....|.+++|+|++..|++|+.||.|+||++
T Consensus 739 ~-~~~~~s~~~~~~~~~~~~~-~--~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 739 F-PMPVLSYKFKTIDPVSGLE-V--DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred C-CCceEEEecccCCcccccc-c--CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5 44443332111 0100000 0 011112469999999999999999999999996
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-28 Score=228.18 Aligned_cols=264 Identities=15% Similarity=0.171 Sum_probs=173.0
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccc--------c---cccc--ccccC
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL--------A---EKNF--MNEHN 178 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~--~~~~~ 178 (487)
++++|.++.| ++||+|||+||.|+.|+||.+...+...........-...+.-.+ . .+.. .....
T Consensus 266 h~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 266 HKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 3499999999 689999999999999999999874432221110000000000000 0 0000 00000
Q ss_pred CCCcceeeeee-eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368 179 PPSFAHGYHLE-WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 256 (487)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 256 (487)
......++... -=..+++..+ .+|.+.|.+++|+.++ +|+++ .|.+|++|++. ...|+.+ ..|.+.|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~--------F~HndfV 412 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKV--------FSHNDFV 412 (712)
T ss_pred CCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeE--------EecCCee
Confidence 00000011000 0123455555 8999999999999765 66676 99999999999 6667765 3799999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-Ce
Q 011368 257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 335 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~ 335 (487)
+||+|+|...++|++|+-||.||||++...+.. .+.. -..-|++++|.|||++.+.|+. |.
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~D-------------l~~lITAvcy~PdGk~avIGt~~G~ 474 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWND-------------LRDLITAVCYSPDGKGAVIGTFNGY 474 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeE-----eehh-------------hhhhheeEEeccCCceEEEEEeccE
Confidence 999999977699999999999999999887643 2222 1367999999999999999985 99
Q ss_pred EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
+++|+... .+....+..+.....+ ..-..|+++.|.|. ...|++.+.|..|+|||.++. ..+..+++..+
T Consensus 475 C~fY~t~~-lk~~~~~~I~~~~~Kk-------~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n 545 (712)
T KOG0283|consen 475 CRFYDTEG-LKLVSDFHIRLHNKKK-------KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRN 545 (712)
T ss_pred EEEEEccC-CeEEEeeeEeeccCcc-------ccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhccccc
Confidence 99999874 5544443322211000 00002479999873 345778899999999999765 34555555544
Q ss_pred c
Q 011368 415 E 415 (487)
Q Consensus 415 ~ 415 (487)
.
T Consensus 546 ~ 546 (712)
T KOG0283|consen 546 T 546 (712)
T ss_pred C
Confidence 3
No 75
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=211.63 Aligned_cols=240 Identities=18% Similarity=0.297 Sum_probs=194.9
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...+|++.|.|++|. .+.|++|+.|.+|+|||+++++. +.++-+|.
T Consensus 232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~---------------------------l~tlihHc----- 277 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP---------------------------LNTLIHHC----- 277 (499)
T ss_pred hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch---------------------------hhHHhhhc-----
Confidence 356799999999986 45999999999999999999976 47888898
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
+.|..+.|+ ..++++++.|.++.+||+....-+
T Consensus 278 -------eaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~i------------------------------------ 310 (499)
T KOG0281|consen 278 -------EAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDI------------------------------------ 310 (499)
T ss_pred -------ceeEEEEEe----CCEEEEecCCceeEEEeccCchHH------------------------------------
Confidence 999999993 459999999999999999865421
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
.+.+ .+.+|...|+.+.|+ .++|+++ .|.+|++|++.+ ...++ ++.+|...|.|+.+. +
T Consensus 311 -------t~rr-VLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-~efvR-------tl~gHkRGIAClQYr--~ 370 (499)
T KOG0281|consen 311 -------TLRR-VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-CEFVR-------TLNGHKRGIACLQYR--D 370 (499)
T ss_pred -------HHHH-HHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-eeeeh-------hhhcccccceehhcc--C
Confidence 1222 248999999999996 5699999 999999999994 44554 468999999999885 5
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~ 344 (487)
.++++|+.|.+|++||+..|.++ +.+++| +.-|.++.|. .+.+++|. ||+|++||+...
T Consensus 371 -rlvVSGSSDntIRlwdi~~G~cL----RvLeGH-------------EeLvRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 371 -RLVVSGSSDNTIRLWDIECGACL----RVLEGH-------------EELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -eEEEecCCCceEEEEeccccHHH----HHHhch-------------HHhhhheeec--CceeeeccccceEEEEecccc
Confidence 89999999999999999999876 777775 7889999996 56888886 599999999763
Q ss_pred Cc--------eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 345 ST--------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 345 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
.. ++..+..|.+. |+.+.| |...|++++.|.+|.|||..++..
T Consensus 431 ldpra~~~~~Cl~~lv~hsgR---------------VFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 431 LDPRAPASTLCLRTLVEHSGR---------------VFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cCCcccccchHHHhhhhccce---------------eEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 22 23333344432 257888 567899999999999999988743
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.8e-28 Score=206.39 Aligned_cols=273 Identities=18% Similarity=0.252 Sum_probs=200.8
Q ss_pred cccccCcEEEEEEcCCC---CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 28 ELQDVDIVSAIEFDKTG---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~---~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
..+|.++|.+++|--.. ..|++++.|.++++|..+.++.. .+.....+||+
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------------~~~~~~~~GHk--- 193 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------------VKALKVCRGHK--- 193 (423)
T ss_pred EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------------hhHHhHhcccc---
Confidence 45699999988875433 35999999999999999877642 22233445898
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..|.+|+. .++|..+++|+.|.+|+||+............... .....
T Consensus 194 ---------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~---------------------rrk~~ 241 (423)
T KOG0313|consen 194 ---------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNR---------------------RRKKQ 241 (423)
T ss_pred ---------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchh---------------------hhhhh
Confidence 99999998 58899999999999999999433221111000000 00000
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
.....-....++.+ +.+|..+|.++.|++ ...++++ .|.+|+.||+.+++....+ ..+..+.|++.+|
T Consensus 242 ~~~~~~~~r~P~vt-l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~---------~~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 242 KREKEGGTRTPLVT-LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL---------TTNKSLNCISYSP 310 (423)
T ss_pred hhhhcccccCceEE-ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee---------ecCcceeEeeccc
Confidence 00000011223333 489999999999998 6677787 9999999999977655443 2345689999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-EEe-CCeEEEEeC
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDI 341 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~-d~~i~iwd~ 341 (487)
.. .+|++|+.|..|++||.+++.-. -.... +.+|.+.|.++.|+|...+++ +++ |+++++||+
T Consensus 311 ~~-~Ll~~gssdr~irl~DPR~~~gs-~v~~s-------------~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 311 LS-KLLASGSSDRHIRLWDPRTGDGS-VVSQS-------------LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred cc-ceeeecCCCCceeecCCCCCCCc-eeEEe-------------eecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 88 99999999999999999986421 01122 456799999999999877655 565 699999999
Q ss_pred CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
++...++..+.+|...+ .++.|. ++.+|++||.|.+|+|+.-.
T Consensus 376 RS~k~plydI~~h~DKv---------------l~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 376 RSTKAPLYDIAGHNDKV---------------LSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ccCCCcceeeccCCceE---------------EEEecc-CCceEEeccCcceEEEeccc
Confidence 98666999999998754 589998 57799999999999998754
No 77
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=216.91 Aligned_cols=364 Identities=15% Similarity=0.169 Sum_probs=244.9
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (487)
Q Consensus 35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (487)
-.++.|++....|.+...|..++|||+++-... .+. ..+--|. .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv-----------------------gk~-~s~lyHS------------~ 370 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV-----------------------GKC-SSMLYHS------------A 370 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccc-----------------------cce-eeeeecc------------c
Confidence 347889999999999999999999999876542 111 2233455 3
Q ss_pred ceeEEEEEe----------cCCCcEEEEEeCCCcEEEEEccccceeEeeecC-CCCceeeeeccccccccccccCCCCcc
Q 011368 115 KINRVRWCA----------APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 115 ~I~~v~~~~----------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
.|+.|.-.| -| ...|.+++.|++|++|++..+....+...+ ...+...+.+...+..++-....+...
T Consensus 371 ciW~Ve~~p~nv~~~~~aclp-~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fd 449 (1080)
T KOG1408|consen 371 CIWDVENLPCNVHSPTAACLP-RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFD 449 (1080)
T ss_pred eeeeeccccccccCcccccCC-ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCccc
Confidence 344443322 12 235899999999999999874333332211 122222233333322222221111111
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
.-... .-.....+++++.+|+|++||+| .-|++++|++..-... ..+++|...|.|+.|+
T Consensus 450 ka~~s-----------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--------~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 450 KALVS-----------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--------CFMEAHESEILCLEYS 510 (1080)
T ss_pred ccchh-----------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh--------hheecccceeEEEeec
Confidence 10000 13445679999999999999999 9999999999844332 2468999999999998
Q ss_pred cC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEE-EeCCeEE
Q 011368 263 PI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLS-RDYMNLK 337 (487)
Q Consensus 263 p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s-~~d~~i~ 337 (487)
.- +.++||+++.|+.|++||....-.+ ..++. +|...|+++.|..+| ..+++ |.|..|.
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l---~qtld-------------~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYDL---VQTLD-------------GHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccch---hhhhc-------------ccccceeEEEEeecCCceEEEeccCchhhh
Confidence 42 2278999999999999999875322 24444 468999999998776 44554 5676665
Q ss_pred EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc-c
Q 011368 338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE-N 416 (487)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-v 416 (487)
+--.+. ......+..|..... ...+ .+|+..|..+++++++.|..|+||++++++ ..+.+++..+. -
T Consensus 575 Fr~~qk-~~~g~~f~r~t~t~~-------ktTl---YDm~Vdp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 575 FRVNQK-ASSGRLFPRHTQTLS-------KTTL---YDMAVDPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEG 642 (1080)
T ss_pred eehhcc-ccCceeccccccccc-------cceE---EEeeeCCCcceEEEEecccceEEEeccccc-eeeeecccccCCC
Confidence 543332 222333333333221 1122 599999999999999999999999999984 46777765443 2
Q ss_pred ccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
.-+.....+.+.+ +++...|.. .+. ..++.....++|..-|+.+.|.+|-++|+++++|+ ||||..
T Consensus 643 ~lIKv~lDPSgiY-----~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 643 DLIKVILDPSGIY-----LATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred ceEEEEECCCccE-----EEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 3333333346667 888888877 555 67788889999999999999999999999888665 999974
No 78
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2e-26 Score=219.73 Aligned_cols=240 Identities=16% Similarity=0.246 Sum_probs=170.9
Q ss_pred eEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (487)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
.+..+.+|. +.|.+++|+| .++.+|++|+.|++|++||+.++...... .
T Consensus 66 ~v~~L~gH~------------~~V~~lafsP-~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i----------------- 114 (568)
T PTZ00420 66 PVIKLKGHT------------SSILDLQFNP-CFSEILASGSEDLTIRVWEIPHNDESVKE-I----------------- 114 (568)
T ss_pred eEEEEcCCC------------CCEEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCCccccc-c-----------------
Confidence 357789999 8999999964 23689999999999999999764311000 0
Q ss_pred cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368 173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 250 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 250 (487)
..+... +.+|...|.+++|+|++..+ +++ .|++|++||++++..... +.
T Consensus 115 --------------------~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~ 165 (568)
T PTZ00420 115 --------------------KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN 165 (568)
T ss_pred --------------------ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee
Confidence 001111 37899999999999988765 677 999999999995543322 12
Q ss_pred CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccce-----eEEEEcCCC
Q 011368 251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-----SDIKFANDG 325 (487)
Q Consensus 251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-----~~v~~s~~~ 325 (487)
|...|.+++|+|+| .+|++++.|+.|+|||+++++.+ ..+.+| .+.+ ....|++++
T Consensus 166 -~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl~gH-------------~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 166 -MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSFHIH-------------DGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred -cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE----EEEecc-------------cCCceeEEEEeeeEcCCC
Confidence 45679999999999 99999999999999999998754 556664 3332 334466898
Q ss_pred CEEEEEe-C----CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 326 QHLLSRD-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 326 ~~l~s~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
.+|++++ + +.|+|||++....++..+..+.... .+ ...-..++|.++++|+.|+.|++|++.
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~----------~L---~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA----------PL---IPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc----------ce---EEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 8888753 3 3799999986566776654443221 00 122234568899999999999999998
Q ss_pred CCCceeEEEeccCCccccceEeeC
Q 011368 401 VGSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
.+......-..+..+...++|.|.
T Consensus 294 ~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 294 LGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCcEEeecccccCCCccceEEccc
Confidence 764322222235677788888885
No 79
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.1e-26 Score=191.54 Aligned_cols=276 Identities=15% Similarity=0.156 Sum_probs=208.7
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
.+.|+.+.|+|.++.|++++-||++++|++...+. ...-.|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----------------------------~~~~~~~---------- 54 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----------------------------KLKFKHG---------- 54 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----------------------------hhheecC----------
Confidence 45799999999999999999999999999876643 1122355
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.++.+.+| .+...+++|+.||.|+++|+.++....+
T Consensus 55 --~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~i--------------------------------------- 90 (323)
T KOG1036|consen 55 --APLLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQI--------------------------------------- 90 (323)
T ss_pred --Cceeeeec---cCCceEEEeccCceEEEEEecCCcceee---------------------------------------
Confidence 88999999 3467899999999999999999875543
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
..|...|.||..++....+++| .|++|++||.+. ...... ......|.++... + +.|+
T Consensus 91 ---------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~~~--------~d~~kkVy~~~v~--g-~~Lv 149 (323)
T KOG1036|consen 91 ---------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVVGT--------FDQGKKVYCMDVS--G-NRLV 149 (323)
T ss_pred ---------ccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-cccccc--------cccCceEEEEecc--C-CEEE
Confidence 7899999999999988888888 999999999994 322221 1223478888765 4 6799
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC---Cc
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD---ST 346 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~---~~ 346 (487)
+|+.+..+.+||+++.....+ .+. ..-...++++++-|++.-.++++ +|.|.+=.+... ..
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q-~re--------------S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQ-RRE--------------SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS 214 (323)
T ss_pred EeecCceEEEEEcccccchhh-hcc--------------ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh
Confidence 999999999999998653310 011 11145789999999877666654 799888666541 13
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
....|+.|.... ...+-++.|.+++|+|-.+.+|||+.||.|.+||+.+.+..
T Consensus 215 kkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl--------------------- 267 (323)
T KOG1036|consen 215 KKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL--------------------- 267 (323)
T ss_pred hceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh---------------------
Confidence 456677776532 12334567789999999999999999999999999876331
Q ss_pred cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec
Q 011368 427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 478 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s 478 (487)
..+..+...|..++|+.||..||+|+
T Consensus 268 --------------------------~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 268 --------------------------KQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred --------------------------hhccCCCCceEEEEeccCCCeEEEEe
Confidence 12233445788999999999999887
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=201.20 Aligned_cols=244 Identities=18% Similarity=0.275 Sum_probs=197.1
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...+.++...|....+.+|+.|..+.++|...++. +.+++||.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------------l~~~~Gh~---------- 261 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------------LATLKGHT---------- 261 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh---------------------------hhhccCcc----------
Confidence 34688999988888999999999999999776654 58899999
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
..|+.+.|+ ++...+++++.|..|++|..........
T Consensus 262 --kki~~v~~~--~~~~~v~~aSad~~i~vws~~~~s~~~~--------------------------------------- 298 (506)
T KOG0289|consen 262 --KKITSVKFH--KDLDTVITASADEIIRVWSVPLSSEPTS--------------------------------------- 298 (506)
T ss_pred --eEEEEEEec--cchhheeecCCcceEEeeccccccCccc---------------------------------------
Confidence 889999995 6777899999999999999876653322
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
...|..+|+.+..+|.|.+|+++ .|+...+.|++.+....... -+...-.+++.+|+||| .+|.
T Consensus 299 --------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ts~~fHpDg-Lifg 363 (506)
T KOG0289|consen 299 --------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS------DETSDVEYTSAAFHPDG-LIFG 363 (506)
T ss_pred --------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe------eccccceeEEeeEcCCc-eEEe
Confidence 37899999999999999999999 99999999999655443321 11223458999999999 9999
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~ 349 (487)
+|..|+.|+|||+.++... .. |++|+++|..++|+.||.||+++. |+.|++||++. .+...
T Consensus 364 tgt~d~~vkiwdlks~~~~----a~-------------Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-l~n~k 425 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNV----AK-------------FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-LKNFK 425 (506)
T ss_pred ccCCCceEEEEEcCCcccc----cc-------------CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh-hcccc
Confidence 9999999999999986533 33 455799999999999999999986 48899999997 55666
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
++...... .+.+++|.+.|++|+.++.|=.|++++-.+.
T Consensus 426 t~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 426 TIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred eeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 66554431 1258999999999999988766666664433
No 81
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=3.1e-26 Score=209.68 Aligned_cols=411 Identities=13% Similarity=0.115 Sum_probs=269.9
Q ss_pred CccccccCcEEEEEEcCCCC---EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE--------
Q 011368 26 DEELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-------- 94 (487)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~~---~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 94 (487)
.+.-+|.+-|.+++|...+. +||+++.|..||||.+.-+.... ...++ .........|.+...
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~---~~~~e---~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED---SNERE---DSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc---ccccc---cccccccCCceeeeeeeEEEEEe
Confidence 35667999999999997554 88999999999999986443110 00000 000011112222222
Q ss_pred --eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc--eeEeeecCC---CC-ceeeeec
Q 011368 95 --TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDH---FP-FVSSENT 166 (487)
Q Consensus 95 --~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~---~~-~~~~~~~ 166 (487)
..+.||+ +.|+++.|+ |++..|++++.|.++.+|...+.. ......... .. ......+
T Consensus 259 ~eall~GHe------------DWV~sv~W~--p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw 324 (764)
T KOG1063|consen 259 FEALLMGHE------------DWVYSVWWH--PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW 324 (764)
T ss_pred hhhhhcCcc------------cceEEEEEc--cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence 2344777 999999994 678889999999999999876542 222211111 00 1111222
Q ss_pred cccccccccccCCCCcceeeeeeeeccc-eeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeec
Q 011368 167 LLAEKNFMNEHNPPSFAHGYHLEWTENM-ATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM 244 (487)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 244 (487)
.+++..+.+.+....-+..... +... .....+.+|.+.|.+++|.|.|.+|.+. .|.+-+++-.-..+....-+
T Consensus 325 -~~n~~~ii~~g~~Gg~hlWkt~-d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi-- 400 (764)
T KOG1063|consen 325 -SPNSNVIIAHGRTGGFHLWKTK-DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI-- 400 (764)
T ss_pred -cCCCCEEEEecccCcEEEEecc-CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee--
Confidence 2233333333222222222100 0011 1122358999999999999999999998 99999998665222222221
Q ss_pred CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcc-----------------c---------cccceeec-
Q 011368 245 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL-----------------C---------DHSARILR- 297 (487)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~-----------------~---------~~~~~~~~- 297 (487)
.+-+-|...++|++|-+.. ..+++|.++..+|+|+....-. . ......+.
T Consensus 401 --aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~ 477 (764)
T KOG1063|consen 401 --ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG 477 (764)
T ss_pred --cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence 2334577788999998854 7899999999999998764110 0 00000010
Q ss_pred ----c-c----c------------cccCc-----------cccccccccceeEEEEcCCCCEEEEEe-----C-CeEEEE
Q 011368 298 ----D-A----A------------ESHGS-----------KSFFTEIIASISDIKFANDGQHLLSRD-----Y-MNLKLW 339 (487)
Q Consensus 298 ----~-h----~------------~~~~~-----------~~~~~~~~~~v~~v~~s~~~~~l~s~~-----d-~~i~iw 339 (487)
+ + . .+|.. ...+.||-..|.+++.+|+|+++|++. . ..|++|
T Consensus 478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEE
Confidence 0 0 0 00000 022467999999999999999999853 1 679999
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc---eeEEEeccCCcc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---GGITVEAGKNEN 416 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~~v 416 (487)
+..+ ...+..+..|.-.+ +.++|||||++|++.+.|.++.+|....... ....++.|...|
T Consensus 558 ~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRII 621 (764)
T KOG1063|consen 558 NTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRII 621 (764)
T ss_pred eccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEE
Confidence 9987 77777899999865 7999999999999999999999999975432 233478999999
Q ss_pred ccceEeeCCccccccccceeeecccce-ecCCCCCc----cc--cccccCCCeEEEEEcCCC-C----EEEEecCCe-EE
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----HE--LSYNLSSKLLHLAWHPTT-N----LIACANGNS-LF 483 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~----~~--~~~~~~~~v~~~~~spd~-~----~la~~s~~~-~~ 483 (487)
.+..++| +... ++++++|.. ++|...+. +. ....+...|+.++|.|-. + .+|+|-..| ++
T Consensus 622 WdcsW~p--de~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~ 694 (764)
T KOG1063|consen 622 WDCSWSP--DEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIV 694 (764)
T ss_pred EEcccCc--ccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEE
Confidence 9999999 6666 999999999 99944333 21 456889999999998742 2 566777555 88
Q ss_pred EEe
Q 011368 484 FHY 486 (487)
Q Consensus 484 i~~ 486 (487)
+|+
T Consensus 695 l~~ 697 (764)
T KOG1063|consen 695 LWR 697 (764)
T ss_pred EEe
Confidence 885
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.5e-27 Score=205.92 Aligned_cols=241 Identities=19% Similarity=0.274 Sum_probs=195.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
.+.|+++.|-.||++||+|+..|.|+|+|..+... +..+++|+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i---------------------------LR~~~ah~---------- 110 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI---------------------------LRQLYAHQ---------- 110 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHH---------------------------HHHHhhcc----------
Confidence 56799999999999999999999999999544221 46688999
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.+|..+.|+| .++..|++|+.|+.+++||+.+......
T Consensus 111 --apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~~--------------------------------------- 148 (487)
T KOG0310|consen 111 --APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQAE--------------------------------------- 148 (487)
T ss_pred --CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEEE---------------------------------------
Confidence 9999999986 5678889999999999999998764211
Q ss_pred ccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
+.+|++.|+|.+|+|- +.++++| .||.|++||++.....+.. -.|..+|..+.+-|.| ..|
T Consensus 149 --------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--------lnhg~pVe~vl~lpsg-s~i 211 (487)
T KOG0310|consen 149 --------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--------LNHGCPVESVLALPSG-SLI 211 (487)
T ss_pred --------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--------ecCCCceeeEEEcCCC-CEE
Confidence 4899999999999995 5577888 9999999999966433222 2588999999999998 888
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
++++.. .+++||+-+|... +..+. .|...|+|+.+..++..|++++ |+.+++||+.+ .+.+
T Consensus 212 asAgGn-~vkVWDl~~G~ql---l~~~~-------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~-~Kvv 273 (487)
T KOG0310|consen 212 ASAGGN-SVKVWDLTTGGQL---LTSMF-------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN-YKVV 273 (487)
T ss_pred EEcCCC-eEEEEEecCCcee---hhhhh-------------cccceEEEEEeecCCceEeecccccceEEEEccc-eEEE
Confidence 888754 7999999966422 12222 2578999999999999999986 79999999765 7778
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
..+...... .+++.+||++.++.|..||.+.+=+...+
T Consensus 274 ~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 274 HSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred Eeeecccce----------------eeEEecCCCceEEEecccceeeeehhhcc
Confidence 777766543 49999999999999999998877655444
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=8.3e-27 Score=193.76 Aligned_cols=296 Identities=14% Similarity=0.169 Sum_probs=209.4
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeE----eeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK----IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+++.+-+| ++||.++++|+.|..|+|.|++.-..+. ......
T Consensus 113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~-------------------------------- 158 (430)
T KOG0640|consen 113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT-------------------------------- 158 (430)
T ss_pred cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc--------------------------------
Confidence 88999999 6899999999999999999997421111 000000
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+...++...+..|.+.|+++.|+|....|++| .|++|+++|+.+...... .+...-...|.++.|+|.| .+
T Consensus 159 -qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA------~K~~qd~~~vrsiSfHPsG-ef 230 (430)
T KOG0640|consen 159 -QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA------FKVFQDTEPVRSISFHPSG-EF 230 (430)
T ss_pred -ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH------HHHhhccceeeeEeecCCC-ce
Confidence 00112222248999999999999999999999 999999999985432110 1122234679999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
|++|..-..+++||+.+-+. |-. ...-.+|.+.|+++.+++.|++.++++ ||.|++||--+ +++
T Consensus 231 llvgTdHp~~rlYdv~T~Qc-------fvs-------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS-~rC 295 (430)
T KOG0640|consen 231 LLVGTDHPTLRLYDVNTYQC-------FVS-------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS-NRC 295 (430)
T ss_pred EEEecCCCceeEEeccceeE-------eee-------cCcccccccceeEEEecCCccEEEEeccCCcEEeecccc-HHH
Confidence 99999999999999998643 222 011256789999999999999999997 69999999876 888
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc-----CCccccceEe
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQ 422 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~ 422 (487)
+.++....+.. .|.+..|..+|+||++.+.|..+++|++.++... ++..+- ...-++..|.
T Consensus 296 v~t~~~AH~gs-------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l-~~YtGAg~tgrq~~rtqAvFN 361 (430)
T KOG0640|consen 296 VRTIGNAHGGS-------------EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML-KEYTGAGTTGRQKHRTQAVFN 361 (430)
T ss_pred HHHHHhhcCCc-------------eeeeEEEccCCeEEeecCCcceeeeeeecCCceE-EEEecCCcccchhhhhhhhhc
Confidence 88886433321 2368999999999999999999999999998553 333322 1111223333
Q ss_pred eCCccccccccceeeecccce-ecCCC--CC-ccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 423 AAPRARRSSLSNLTRGLYRQA-HENSS--SG-HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 423 ~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~-~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
-. ...+ |.--...+. .-|+. .. ......+|.+.+..+.-||.++.+.++++|. ..+|+
T Consensus 362 ht-EdyV-----l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 362 HT-EDYV-----LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred Cc-cceE-----EccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 22 1111 222222233 55622 21 2223458999999999999999999999875 66665
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-26 Score=211.23 Aligned_cols=271 Identities=18% Similarity=0.268 Sum_probs=205.4
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (487)
Q Consensus 35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (487)
.+-++|+ ..+.||+|. ...|.+|+..+++.. ....-++ +
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------------~l~~~~~------------~ 218 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------------ELCSFGE------------E 218 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------------EeEecCC------------C
Confidence 4456788 455677775 357999998877531 1122224 7
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
.|+++.| +++|.+|++|..+|.|.|||..+.+....
T Consensus 219 ~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~------------------------------------------ 254 (484)
T KOG0305|consen 219 LVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRT------------------------------------------ 254 (484)
T ss_pred ceEEEEE--CCCCCEEEEeecCCeEEEEehhhcccccc------------------------------------------
Confidence 8999999 68999999999999999999987764433
Q ss_pred eeeeeccc-CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 195 ATKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 195 ~~~~~~~~-~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+.+ |...|-+++|+ +..+.+| .|+.|..+|++....... .+.+|...|..++|++++ .++|+|
T Consensus 255 -----~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~qeVCgLkws~d~-~~lASG 319 (484)
T KOG0305|consen 255 -----LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHRQEVCGLKWSPDG-NQLASG 319 (484)
T ss_pred -----ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------hhhcccceeeeeEECCCC-CeeccC
Confidence 245 99999999998 6788888 999999999996655443 367899999999999999 999999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe---CCeEEEEeCCCCCcee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD---YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~---d~~i~iwd~~~~~~~~ 348 (487)
+.|+.+.|||....... ..+.. |.+.|.+++|+|- ..+||+|+ |+.|++||..+ +..+
T Consensus 320 gnDN~~~Iwd~~~~~p~----~~~~~-------------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i 381 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPK----FTFTE-------------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARI 381 (484)
T ss_pred CCccceEeccCCCcccc----EEEec-------------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEe
Confidence 99999999999554432 44444 5899999999995 55777763 69999999987 7777
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
..+..... |.++.|++..+.|+++. .++.|.||+..+. .....+
T Consensus 382 ~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l----------------- 427 (484)
T KOG0305|consen 382 DSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL----------------- 427 (484)
T ss_pred cccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-----------------
Confidence 66655443 25999999987777653 4678999999874 223333
Q ss_pred cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368 427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 486 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~ 486 (487)
.+|...|..++++|||..+++|+ +..+.+|+
T Consensus 428 -----------------------------~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 428 -----------------------------LGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred -----------------------------cCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 45555677777777777777666 44466665
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=208.87 Aligned_cols=224 Identities=14% Similarity=0.205 Sum_probs=168.6
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.++++ .|.|..|++|+.|.+|++||+..-....
T Consensus 168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------------------------------ 203 (641)
T KOG0772|consen 168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASM------------------------------------------ 203 (641)
T ss_pred eEEEEeee--cCCCceeeeccccceEEEEecccccccc------------------------------------------
Confidence 88999999 6889999999999999999998643211
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC-----CCCCCCCCCcEEEEEEecCCCC
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK-----PSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
...+.+.......|++++|++.|..|++. .....+++|.. +....+..... ....++|...++|.+|+|....
T Consensus 204 ~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~ 282 (641)
T KOG0772|consen 204 RSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE 282 (641)
T ss_pred hhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCccc
Confidence 11122235667789999999999988887 88899999988 55554443211 1245789999999999999888
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC-
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS- 345 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~- 345 (487)
.+++++.||++||||+...+.. .+++..... .+-.-.++.++|+|||++||+| .||.|.+|+.....
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~~--------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v 351 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKPA--------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV 351 (641)
T ss_pred ceEEecCCCcEEEEecCCchhh---eeEEeeccC--------CCcccCceeeecCCCcchhhhcccCCceeeeecCCccc
Confidence 9999999999999999876532 234433111 1224578999999999999987 46999999975421
Q ss_pred ce-eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368 346 TP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 406 (487)
Q Consensus 346 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~ 406 (487)
++ ...-.+|.... +++++.||+||++|++-+.|+++++||+++.++.+
T Consensus 352 ~p~~~vk~AH~~g~-------------~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQ-------------DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred ccceEeeeccCCCC-------------ceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 22 23334555421 33799999999999999999999999999875543
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5e-25 Score=175.20 Aligned_cols=309 Identities=19% Similarity=0.281 Sum_probs=216.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
+..++.|.+++|+|.|.+.|.|+...+.+|-....-..+ |. .. .....|+....+.-+.|.
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~------r~-----~h-ea~~~pp~v~~kr~khhk------- 89 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL------RH-----AH-EAAKQPPSVLCKRNKHHK------- 89 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc------cc-----cc-ccccCCCeEEeeeccccC-------
Confidence 445788999999999999999999999998765432110 00 00 112233333444455666
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe----eecCCCCceeeeecc--cccc-ccccccCCCC
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----KEMDHFPFVSSENTL--LAEK-NFMNEHNPPS 181 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~ 181 (487)
+.|.|.+| +|+|+++++|+.|++|++..++....... .-......+..+.|. +..+ .++++.. ..
T Consensus 90 -----gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-ag 161 (350)
T KOG0641|consen 90 -----GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AG 161 (350)
T ss_pred -----ccEEEEEe--cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CC
Confidence 99999999 68999999999999999987765432211 111122233444444 2333 3333333 33
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
.-.++......++....+ .+|.+.|.++ ++-++-++++| .|.+|++||++ -..++++++.....-.-..+.|.+++
T Consensus 162 dc~iy~tdc~~g~~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred cceEEEeecCCCCcceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCcccceeEEEE
Confidence 334444445556666665 8999999876 34468899999 99999999999 45566665432111111236799999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEE
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 339 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iw 339 (487)
..|.| .+|++|-.|....+||++.++++ +.|.. |...|.++.|+|...||++|++ ..|++-
T Consensus 239 vdpsg-rll~sg~~dssc~lydirg~r~i----q~f~p-------------hsadir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 239 VDPSG-RLLASGHADSSCMLYDIRGGRMI----QRFHP-------------HSADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred ECCCc-ceeeeccCCCceEEEEeeCCcee----eeeCC-------------CccceeEEEeCCCceEEEEecccceEEEe
Confidence 99999 99999999999999999999876 66666 4789999999999999999974 999999
Q ss_pred eCCCC---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 340 DIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 340 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
|++-+ .-++.....|.... ..+.|+|..--+++.+.|.++.+|-+.
T Consensus 301 dlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence 98632 12233344455432 378999998889999999999999764
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.1e-28 Score=202.72 Aligned_cols=283 Identities=19% Similarity=0.240 Sum_probs=222.9
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+.|..| +|||++|++|+.||.|.+||..+|++.+..+++....
T Consensus 214 Sh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~--------------------------------- 258 (508)
T KOG0275|consen 214 SHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN--------------------------------- 258 (508)
T ss_pred cchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhhhcc---------------------------------
Confidence 66788999 6899999999999999999999998776654443221
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~ 271 (487)
+--+...|.|++|+.|..++++| .||.|++|.+.+ +.|++ .+. +|...|+|+.|+.++ ..+++
T Consensus 259 ------fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~ClR-------rFdrAHtkGvt~l~FSrD~-SqiLS 323 (508)
T KOG0275|consen 259 ------FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCLR-------RFDRAHTKGVTCLSFSRDN-SQILS 323 (508)
T ss_pred ------eeecccceEEEeecccHHHhhccCcCCcEEEEEEec-chHHH-------HhhhhhccCeeEEEEccCc-chhhc
Confidence 24678999999999999999999 999999999995 55553 233 799999999999999 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
++.|.++|+.-+.+|+.+ +.|.+ |.+.|+...|++||.++++++ ||+|++|+.++ ..++.+
T Consensus 324 ~sfD~tvRiHGlKSGK~L----KEfrG-------------HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~T 385 (508)
T KOG0275|consen 324 ASFDQTVRIHGLKSGKCL----KEFRG-------------HSSYVNEATFTDDGHHIISASSDGTVKVWHGKT-TECLST 385 (508)
T ss_pred ccccceEEEeccccchhH----HHhcC-------------ccccccceEEcCCCCeEEEecCCccEEEecCcc-hhhhhh
Confidence 999999999999999876 66666 588999999999999999985 79999999998 888888
Q ss_pred eecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC---ccccceEeeCCc
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---ENRKPILQAAPR 426 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~ 426 (487)
++...... .|.++..-| +...++++...++|+|-++.. ..+..+...+. .-...+.+| .
T Consensus 386 fk~~~~d~-------------~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSp--k 448 (508)
T KOG0275|consen 386 FKPLGTDY-------------PVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSP--K 448 (508)
T ss_pred ccCCCCcc-------------cceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecC--C
Confidence 87654322 124665555 567888899999999999863 34454443322 222334444 5
Q ss_pred cccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 427 ARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
|.+ +-..+.|+. ..+ ..+.+...+.-|++.|..++-||-.+.||+=+.|+ +.+|.
T Consensus 449 Gew-----iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEW-----IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcE-----EEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 555 555566666 555 55667777888999999999999999999999887 56664
No 88
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=3.9e-26 Score=209.05 Aligned_cols=405 Identities=15% Similarity=0.167 Sum_probs=261.8
Q ss_pred cccccCcEEEEEEcCCCC---EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 28 ELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~---~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
.-+|..+|+|+.|-|+.+ ++++|+.|+.|.+|.++.. ....+.++++|.
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~-------------------------~~~~i~~~~g~~--- 101 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE-------------------------YLIKIYTIQGHC--- 101 (764)
T ss_pred ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh-------------------------heEEEEeecCcc---
Confidence 446999999999999887 8999999999999999833 234567788887
Q ss_pred ccccccccccceeEEEEEecCCCcEEEE-EeCCCcEEEEEccccceeEeeecCC---CCceeeeeccccccccccccCCC
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDH---FPFVSSENTLLAEKNFMNEHNPP 180 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 180 (487)
+.++++. +...+.+ .+.|+++.+||.+..+........+ ..-..|++..+..+.++.+.+..
T Consensus 102 -----------~~~~cv~---a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs 167 (764)
T KOG1063|consen 102 -----------KECVCVV---ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS 167 (764)
T ss_pred -----------eeEEEEE---eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc
Confidence 4455552 2223333 3799999999996555222111111 11122555555444554444444
Q ss_pred Ccceeeeeeeeccceee-eecccCCCceeEEEeCCC---CCEEEEe-cCCeEEEEEccCCCc------------------
Q 011368 181 SFAHGYHLEWTENMATK-VYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQ------------------ 237 (487)
Q Consensus 181 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~s~~---~~~l~s~-~d~~i~iwd~~~~~~------------------ 237 (487)
.........- .....+ .-+.+|.+.|.+++|... .-+++++ .|..|+||.+.-.+.
T Consensus 168 ~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~ 246 (764)
T KOG1063|consen 168 KFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPV 246 (764)
T ss_pred ceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCce
Confidence 3333222221 222222 225899999999999764 3477788 999999998864331
Q ss_pred --eeEEee--cCC-CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcc-----------ccc----------
Q 011368 238 --CFNIVD--MKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL-----------CDH---------- 291 (487)
Q Consensus 238 --~~~~~~--~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~---------- 291 (487)
+...++ +.. .-+.+|.+.|+++.|+|.+ ..|++++.|.++.+|......- -..
T Consensus 247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~ 325 (764)
T KOG1063|consen 247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS 325 (764)
T ss_pred eeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence 110000 100 2345999999999999999 8999999999999997765310 000
Q ss_pred -------------cceeecc-cccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC--------------
Q 011368 292 -------------SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR-------------- 342 (487)
Q Consensus 292 -------------~~~~~~~-h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~-------------- 342 (487)
-.+.+.. ....-.......||...|.+++|+|.|+||++.+ |.+-|+|---
T Consensus 326 ~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi 405 (764)
T KOG1063|consen 326 PNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI 405 (764)
T ss_pred CCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccc
Confidence 0001110 0000011233578999999999999999999864 6666665321
Q ss_pred ------C--------------CCceeeeeeccccc-----------------------cc--------------------
Q 011368 343 ------M--------------DSTPVATFKIHEHL-----------------------RP-------------------- 359 (487)
Q Consensus 343 ------~--------------~~~~~~~~~~~~~~-----------------------~~-------------------- 359 (487)
. +.+.++.+..+... ++
T Consensus 406 HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 406 HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred ccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 0 00111111111000 00
Q ss_pred ----------ccc---------------------cccCCCCcceeeEEEEcCCCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368 360 ----------KLC---------------------DLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS 403 (487)
Q Consensus 360 ----------~~~---------------------~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-----g~i~iwd~~~~~ 403 (487)
..+ .+|+.+ +.|++++.+|+|+++|+++.. ..|++|+..+-.
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG--yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~ 563 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG--YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL 563 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc--eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh
Confidence 000 022211 236899999999999998865 359999998874
Q ss_pred ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccc------cccccCCCeEEEEEcCCCCEEEE
Q 011368 404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE------LSYNLSSKLLHLAWHPTTNLIAC 476 (487)
Q Consensus 404 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~------~~~~~~~~v~~~~~spd~~~la~ 476 (487)
..+.+.+|.-.|+.++|+| ++++ |++.++|.. .+|...+... ....|..-|.+..|+||+.++|+
T Consensus 564 -~~~~L~~HsLTVT~l~FSp--dg~~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 564 -QVQELEGHSLTVTRLAFSP--DGRY-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred -hhheecccceEEEEEEECC--CCcE-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence 4668999999999999999 8888 999999999 9994432221 24468888999999999999999
Q ss_pred ecCC-eEEEEe
Q 011368 477 ANGN-SLFFHY 486 (487)
Q Consensus 477 ~s~~-~~~i~~ 486 (487)
+|-| .+.+|.
T Consensus 636 aSRDK~VkVW~ 646 (764)
T KOG1063|consen 636 ASRDKKVKVWE 646 (764)
T ss_pred ecCCceEEEEe
Confidence 9955 588885
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=219.98 Aligned_cols=270 Identities=16% Similarity=0.263 Sum_probs=221.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|...+.|..|. +.++++++.|++|++|+..++... ...+.||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i--------------------------~~~l~GH~--------- 249 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI--------------------------LTRLVGHF--------- 249 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEE--------------------------EeeccCCC---------
Confidence 46678899998 568999999999999998877642 34499999
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+.|.++++. ..+.++++|+.|.++++||..++++...
T Consensus 250 ---g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~-------------------------------------- 286 (537)
T KOG0274|consen 250 ---GGVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHS-------------------------------------- 286 (537)
T ss_pred ---CCceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEE--------------------------------------
Confidence 999999993 3578999999999999999999987765
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
+.+|...|.++... ...+++| .|.+|++|++. .+.++.+ +.+|.+.|.++..+ + .++
T Consensus 287 ---------l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l-------~~~h~~~V~~v~~~--~-~~l 344 (537)
T KOG0274|consen 287 ---------LQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNL-------LRGHTGPVNCVQLD--E-PLL 344 (537)
T ss_pred ---------ecCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEE-------eccccccEEEEEec--C-CEE
Confidence 47999999999875 4577778 99999999999 5666655 45699999999998 5 799
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC-ce
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS-TP 347 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~-~~ 347 (487)
++|+.|+.|++||..+++.+ +.+.+ |...|.++.+.+. ..+++|+ |+.|++||+++ . ++
T Consensus 345 vsgs~d~~v~VW~~~~~~cl----~sl~g-------------H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~-~~~c 405 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGKCL----KSLSG-------------HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT-KRKC 405 (537)
T ss_pred EEEecCceEEEEEhhhceee----eeecC-------------CcceEEEEEecCc-ceEEeeeeccceEeecCCc-hhhh
Confidence 99999999999999988765 66666 5899999988765 7888885 79999999997 6 89
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec-cCCccccceEeeCCc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPR 426 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 426 (487)
+..+.+|...+ -.+...+++|++++.|++|++||.+++ ....++++ |...+..+... +
T Consensus 406 ~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~~v~~l~~~---~ 464 (537)
T KOG0274|consen 406 IHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVGGVSALALG---K 464 (537)
T ss_pred hhhhcCCcccc-----------------cccccccceeEeccccccEEEeecccC-ceeeeeccCCcccEEEeecC---c
Confidence 99999998753 223346789999999999999999988 55777777 66777776665 1
Q ss_pred cccccccceeeecccce-ecCCC
Q 011368 427 ARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
.. ++.++.++. ++|+.
T Consensus 465 ~~------il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 465 EE------ILCSSDDGSVKLWDL 481 (537)
T ss_pred ce------EEEEecCCeeEEEec
Confidence 11 677888888 99933
No 90
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=5.1e-26 Score=216.06 Aligned_cols=220 Identities=13% Similarity=0.132 Sum_probs=166.2
Q ss_pred cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
..+|.+.|++++|+| ++++||+|+.|++|+|||+.++... ....+.+..+.+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~----- 125 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHT----- 125 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCC-----
Confidence 567999999999999 8899999999999999998765321 00123456788998
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|.+++|+|. .+.+|++++.|++|+|||+.+++....
T Consensus 126 -------~~V~~l~f~P~-~~~iLaSgs~DgtVrIWDl~tg~~~~~---------------------------------- 163 (493)
T PTZ00421 126 -------KKVGIVSFHPS-AMNVLASAGADMVVNVWDVERGKAVEV---------------------------------- 163 (493)
T ss_pred -------CcEEEEEeCcC-CCCEEEEEeCCCEEEEEECCCCeEEEE----------------------------------
Confidence 89999999642 246899999999999999998764432
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc-EEEEEEecC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPI 264 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~ 264 (487)
+.+|...|.+++|+|++++|+++ .|+.|++||++++. .+. .+.+|... +..+.|.++
T Consensus 164 -------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~v~-------tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 164 -------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVS-------SVEAHASAKSQRCLWAKR 222 (493)
T ss_pred -------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-EEE-------EEecCCCCcceEEEEcCC
Confidence 36899999999999999999999 99999999999544 332 23566553 456788988
Q ss_pred CCCEEEEEe----CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368 265 YCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL 338 (487)
Q Consensus 265 ~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i 338 (487)
+ ..+++++ .|+.|++||+++.... ......+ +...+....|++++.+|++++ |+.|++
T Consensus 223 ~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~d------------~~~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 223 K-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDLD------------QSSALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred C-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEeccC------------CCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 7 6666654 4789999999875422 1222211 124566678999999888763 799999
Q ss_pred EeCCCCCceeeeee
Q 011368 339 WDIRMDSTPVATFK 352 (487)
Q Consensus 339 wd~~~~~~~~~~~~ 352 (487)
||+.. +.++....
T Consensus 287 wdl~~-~~~~~~~~ 299 (493)
T PTZ00421 287 FELMN-ERLTFCSS 299 (493)
T ss_pred EEeeC-CceEEEee
Confidence 99986 66665543
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=191.49 Aligned_cols=253 Identities=17% Similarity=0.276 Sum_probs=195.2
Q ss_pred cchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCC
Q 011368 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (487)
....|.+.+.|- ...|..+|+|+|.+ +.|+|+|+.|-+|+|||+....+
T Consensus 27 ~s~~~~l~~lF~------~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q----------------------- 75 (362)
T KOG0294|consen 27 DSVKPTLKPLFA------FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ----------------------- 75 (362)
T ss_pred cccceeeecccc------ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------------
Confidence 445566666665 34689999999986 78999999999999999987665
Q ss_pred cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (487)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (487)
+..+-.|. +.|+++.|.+......|++|+.||.|.+|+...-.+...
T Consensus 76 ----lg~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s----------------- 122 (362)
T KOG0294|consen 76 ----LGILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS----------------- 122 (362)
T ss_pred ----hcceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee-----------------
Confidence 36677788 999999996533334899999999999999987654443
Q ss_pred ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC
Q 011368 170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 248 (487)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 248 (487)
+.+|.+.|+.++.+|.+++.++- .|+.+++||+-.+..... .+
T Consensus 123 ------------------------------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-~~----- 166 (362)
T KOG0294|consen 123 ------------------------------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-LN----- 166 (362)
T ss_pred ------------------------------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee-ec-----
Confidence 48999999999999999988876 999999999985554332 11
Q ss_pred CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368 249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 328 (487)
Q Consensus 249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 328 (487)
+ ....+.+.|+|.| .+++.++.+ .|-+|.+.+..+. ..... ...+.++.|-..+ +|
T Consensus 167 L---~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~--------------~~r~l~~~~l~~~-~L 222 (362)
T KOG0294|consen 167 L---KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIEN--------------PKRILCATFLDGS-EL 222 (362)
T ss_pred c---CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhc--------------cccceeeeecCCc-eE
Confidence 1 1223449999999 888888776 4889998876533 22222 2356777776544 55
Q ss_pred EEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEE--EcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 329 LSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 329 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
++| +++.|.+||... ..+...+.+|...+. ++. -.|++.+|+++|.||.|+|||+...
T Consensus 223 ~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 555 569999999986 889999999998663 444 3567899999999999999999875
No 92
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.7e-25 Score=202.34 Aligned_cols=326 Identities=14% Similarity=0.146 Sum_probs=241.0
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+|.|+||+.+.+.||.+-.||.|.||++...= -....+.+++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w--------------------------~~~~vi~g~~---------- 68 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW--------------------------FLEPVIHGPE---------- 68 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc--------------------------eeeEEEecCC----------
Confidence 4579999999999999999999999999986542 2346677766
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+..|.+++|+ ++..|++.+.+|.|.-||+.+.+.+..
T Consensus 69 -drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~--------------------------------------- 105 (691)
T KOG2048|consen 69 -DRSIESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYN--------------------------------------- 105 (691)
T ss_pred -CCceeeEEEc---cCCeEEeecCCceEEEEecccCceeEE---------------------------------------
Confidence 4899999994 567899999999999999999876654
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
.....+.|++++.+|.+..++.| +||.++..+...+.-.... .+....+.|.+++|+|++ ..++
T Consensus 106 --------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRvLslsw~~~~-~~i~ 170 (691)
T KOG2048|consen 106 --------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRVLSLSWNPTG-TKIA 170 (691)
T ss_pred --------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccccceEEEEEecCCc-cEEE
Confidence 25667889999999999999998 9997777777733322222 344556889999999999 8899
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~ 349 (487)
.|+.||.|++||...+.........+.. ... +...-|+++.|-.++ .|++|+. |+|.+||... +..+.
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~----l~k-----~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~-gTLiq 239 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLDR----LSK-----REPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIF-GTLIQ 239 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecccc----ccc-----CCceEEEEEEEeecC-cEEEecCCceEEEEcccC-cchhh
Confidence 9999999999999988654210011111 000 013467888888665 6788865 9999999987 88899
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc---eeEEEeccCCccccceEeeCCc
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---GGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
.+..|..-+ .+++.++++.++++++.|+.|.-|...+.+. .......|...+++++..+.
T Consensus 240 S~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 240 SHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred hhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence 998888743 6999999999999999999999999987754 23344567777777766652
Q ss_pred cccccccceeeecccce-------------------------------------------ecCCCCCccc----------
Q 011368 427 ARRSSLSNLTRGLYRQA-------------------------------------------HENSSSGHHE---------- 453 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~-------------------------------------------~~w~~~~~~~---------- 453 (487)
. +.+|++|.. .+|..+....
T Consensus 303 --~-----l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 303 --A-----LISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred --e-----EEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence 1 444444332 2232221100
Q ss_pred -cccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 454 -LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 454 -~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
....-...|.+.+.||||++||.++-..++||.
T Consensus 376 kl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISPDGNLIAISTVSRTKIYR 409 (691)
T ss_pred eeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence 111233468899999999999999977777775
No 93
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.4e-26 Score=216.21 Aligned_cols=238 Identities=15% Similarity=0.196 Sum_probs=168.8
Q ss_pred cccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368 200 PHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277 (487)
Q Consensus 200 ~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 277 (487)
+.+|.+.|.+++|+|+ +++|++| .|++|++||+.........+......+.+|...|.+++|+|++..+|++++.|+.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3799999999999996 7899999 9999999999854321111100112357899999999999998345678999999
Q ss_pred EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccc
Q 011368 278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 356 (487)
Q Consensus 278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~ 356 (487)
|+|||+++++.. ..+.. ...|.+++|+|+|.+|++++ |+.|+|||+++ +..+..+.+|.+
T Consensus 150 IrIWDl~tg~~~----~~i~~--------------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g 210 (568)
T PTZ00420 150 VNIWDIENEKRA----FQINM--------------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDG 210 (568)
T ss_pred EEEEECCCCcEE----EEEec--------------CCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccC
Confidence 999999987643 22222 35799999999999999875 69999999997 788888988876
Q ss_pred cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC----cEEEEEeCCCCceeEEEeccCCccccceEee-CCcccccc
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAGKNENRKPILQA-APRARRSS 431 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~ 431 (487)
.+.. ..++...|++++.+|++++.|+ .|+|||+++....+.....+ .....+.... ..++.+
T Consensus 211 ~~~s----------~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l-- 277 (568)
T PTZ00420 211 GKNT----------KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLI-- 277 (568)
T ss_pred Ccee----------EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCE--
Confidence 4310 0112345678999999988774 79999999654444443322 2222332222 224666
Q ss_pred ccceeeecccce-ecCCCCCc-cc--cccccCCCeEEEEEcCCCC
Q 011368 432 LSNLTRGLYRQA-HENSSSGH-HE--LSYNLSSKLLHLAWHPTTN 472 (487)
Q Consensus 432 ~~~l~~g~~~~~-~~w~~~~~-~~--~~~~~~~~v~~~~~spd~~ 472 (487)
+++|..|+. ++|..... .. ..+.+..++..++|.|+-.
T Consensus 278 ---~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 278 ---YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ---EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 889999999 99944222 11 2234567888999999754
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4e-27 Score=213.98 Aligned_cols=259 Identities=20% Similarity=0.330 Sum_probs=208.7
Q ss_pred cccCcEE---EEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 30 QDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 30 ~h~~~V~---~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
+|...|. .+..+. .++||++|++||.|++|++..... .|+..+...++.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---------------------~~s~~~~asme~Hs---- 73 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---------------------EPSTPYIASMEHHS---- 73 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccC---------------------CcccchhhhhhhhH----
Confidence 5666676 566664 567899999999999999865432 12333567788898
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
+.|+.+..+ .+++-|++++.|-+|++|+...+...
T Consensus 74 --------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~----------------------------------- 108 (735)
T KOG0308|consen 74 --------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTF----------------------------------- 108 (735)
T ss_pred --------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcch-----------------------------------
Confidence 889999985 67889999999999999999876411
Q ss_pred eeeeeeccceeeeecccCCCceeEEEe-CCCCCEEEEe-cCCeEEEEEccCCCc-eeEEe-ecCCCCCC-CCCCcEEEEE
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIV-DMKPSNMD-DLTEVITSAE 260 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~-s~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~-~~~~~v~~v~ 260 (487)
|..+ +..|.+.|.|++. .++..++|+| -|+.|.+||++++.. .+... ......+. ++...|++++
T Consensus 109 ---------c~st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 109 ---------CMST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred ---------hHhh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 2222 3789999999999 7888899998 999999999995422 11111 01112334 7889999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEE
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLW 339 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iw 339 (487)
.++.| ..|++|+.++-|++||.++.+.+ ..+. +|...|..+..++||..++++ +||+|++|
T Consensus 179 ~N~t~-t~ivsGgtek~lr~wDprt~~ki----mkLr-------------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 179 MNQTG-TIIVSGGTEKDLRLWDPRTCKKI----MKLR-------------GHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred cCCcc-eEEEecCcccceEEeccccccce----eeee-------------ccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 99999 99999999999999999997643 3333 468999999999999999987 57999999
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
|+.. .+++.++..|...+ +++..+|+=.++++|+.||.|+.=|+.+.
T Consensus 241 dLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 241 DLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9986 89999999999854 79999999999999999999999999986
No 95
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.3e-25 Score=195.08 Aligned_cols=383 Identities=11% Similarity=0.094 Sum_probs=259.7
Q ss_pred CCCCccccccCcEEEEEEcCCCCEEEEEecCC--------cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE
Q 011368 23 RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (487)
Q Consensus 23 ~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (487)
........|++.|.|++.+||.-.+++|...| .++|||..+... +
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------------------------L 147 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------------------------L 147 (626)
T ss_pred hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------------------------e
Confidence 34445678999999999999998899886555 489999654432 2
Q ss_pred eeecCCCcccccccccccccceeEEEEEecCCCcEEEEE--eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (487)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
..+..-. ..|.+++|++...|.+++.. +.+..+.+||...+......+ .....+....|++.+..
T Consensus 148 ~V~g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-~sne~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 148 HVIGFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-TSNEVVFLATFHPTDPN 214 (626)
T ss_pred eeecccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-eccceEEEEEeccCCCc
Confidence 3333222 78999999987777777664 567789999998764332211 11233556778888888
Q ss_pred cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368 173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 251 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 251 (487)
++..++..-..+.....-...+...++-......|.|++|.++|.. ++| .+|.|.||+... .+..+. ...
T Consensus 215 liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~-~~~~k~-------~~a 285 (626)
T KOG2106|consen 215 LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGT-NRISKQ-------VHA 285 (626)
T ss_pred EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCC-ceEEeE-------eee
Confidence 7777766544333111111111111222233477999999999854 577 999999999873 333322 238
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc-------cce-eecccccc---------------cCcccc
Q 011368 252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SAR-ILRDAAES---------------HGSKSF 308 (487)
Q Consensus 252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~-~~~~h~~~---------------~~~~~~ 308 (487)
|.+.|.++....+| .|++|+.|+.|..||-.-.+.... .++ +.+++.+- ......
T Consensus 286 H~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 286 HDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred cCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 99999999999998 566699999999998332211000 001 11111110 000011
Q ss_pred ccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368 309 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 387 (487)
Q Consensus 309 ~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 387 (487)
..+|......++.+|+...+++++ |+.+++|+ +.+++......... .++.|+|.| .+|.
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~----------------~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN---DHKLEWTKIIEDPA----------------ECADFHPSG-VVAV 423 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEcc---CCceeEEEEecCce----------------eEeeccCcc-eEEE
Confidence 246788899999999988888765 79999999 25666555444332 389999999 9999
Q ss_pred EcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC--CCccccc--cccCCCe
Q 011368 388 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS--YNLSSKL 462 (487)
Q Consensus 388 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~--~~~~~~v 462 (487)
|+..|...+.|.++. ....++....+++.+.++| +|.+ |+.|+.|+. .++.. .+..... .-+-++|
T Consensus 424 Gt~~G~w~V~d~e~~--~lv~~~~d~~~ls~v~ysp--~G~~-----lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~i 494 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQ--DLVTIHTDNEQLSVVRYSP--DGAF-----LAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPI 494 (626)
T ss_pred eeccceEEEEecccc--eeEEEEecCCceEEEEEcC--CCCE-----EEEecCCCeEEEEEECCCCcEEEEeeeecCcee
Confidence 999999999999874 3445555588999999999 7777 999999999 88822 2222211 1223899
Q ss_pred EEEEEcCCCCEEEEecCCeEEEE
Q 011368 463 LHLAWHPTTNLIACANGNSLFFH 485 (487)
Q Consensus 463 ~~~~~spd~~~la~~s~~~~~i~ 485 (487)
+++.||+|+++|.+.+.|.-.+|
T Consensus 495 thLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 495 THLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred EEeeecCCCceEEeccCceEEEE
Confidence 99999999999999998875554
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.5e-26 Score=202.07 Aligned_cols=267 Identities=15% Similarity=0.234 Sum_probs=197.6
Q ss_pred cccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.+.|.+.|+.+..-|.. ..+|+++..+.|.|||.....-. .....+.++-..+.||+
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-----------------~~~~~~~~Pdl~L~gH~----- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-----------------PKASGECRPDLRLKGHE----- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-----------------ccccccCCCceEEEeec-----
Confidence 36688999999999976 56677788999999998765431 00111445567889998
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
+.=.+++|++. ....|++++.|++|.+||+........
T Consensus 178 -------~eg~glsWn~~-~~g~Lls~~~d~~i~lwdi~~~~~~~~---------------------------------- 215 (422)
T KOG0264|consen 178 -------KEGYGLSWNRQ-QEGTLLSGSDDHTICLWDINAESKEDK---------------------------------- 215 (422)
T ss_pred -------ccccccccccc-cceeEeeccCCCcEEEEeccccccCCc----------------------------------
Confidence 44577999763 445789999999999999986543200
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
....+..+.+|...|..++|++- ..+|+++ +|+.+.|||+++..... .....+|.+.|.|++|+|.
T Consensus 216 ------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------~~~~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 216 ------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------SHSVKAHSAEVNCVAFNPF 283 (422)
T ss_pred ------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC------cccccccCCceeEEEeCCC
Confidence 00122335899999999999984 5566666 99999999999521111 2356789999999999998
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE-EE-EeCCeEEEEeCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LS-RDYMNLKLWDIR 342 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~s-~~d~~i~iwd~~ 342 (487)
+..+||+|+.|++|.+||+|+-.. .+..+.+ |...|.+|.|+|...-+ ++ |.|+.+.+||+.
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~-------------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNK---PLHTFEG-------------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CCceEEeccCCCcEEEeechhccc---CceeccC-------------CCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 878999999999999999998543 3355555 58999999999987654 44 457999999996
Q ss_pred CCCce-------------eeeeecccccccccccccCCCCcceeeEEEEcCCCCE-EEEEcCCCcEEEEEeCC
Q 011368 343 MDSTP-------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGV 401 (487)
Q Consensus 343 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~sg~~dg~i~iwd~~~ 401 (487)
.-+.. +..-.+|...+ ..+.|+|+..+ |++.+.|+.+.||++..
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 53322 23334454433 58999997664 67889999999999873
No 97
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=9e-27 Score=203.49 Aligned_cols=285 Identities=16% Similarity=0.251 Sum_probs=202.9
Q ss_pred CCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCC
Q 011368 100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (487)
Q Consensus 100 h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
+.+.++....+.+++.|+.+++.| .+...+++.+..+.|.|||.....-.........+
T Consensus 111 ~~~~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~P-------------------- 169 (422)
T KOG0264|consen 111 VSGKVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRP-------------------- 169 (422)
T ss_pred cccceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCC--------------------
Confidence 333444445556669999999987 56678888899999999998764322211001111
Q ss_pred CCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368 180 PSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 257 (487)
- ..+.+|...-++++|++. .-.++++ .|++|++||+......-..+ .+...+.+|...|.
T Consensus 170 ----------------d-l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-~p~~~~~~h~~~Ve 231 (422)
T KOG0264|consen 170 ----------------D-LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-DPKTIFSGHEDVVE 231 (422)
T ss_pred ----------------c-eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-cceEEeecCCccee
Confidence 0 114788888889999984 3356666 99999999998654421111 11134678999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEEe-CCe
Q 011368 258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD-YMN 335 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~-d~~ 335 (487)
.++|++....+|++++.|+.+.|||+|++. ....+... +|.+.|.+++|+|-+.+ ||+|+ |++
T Consensus 232 DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~-------------ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 232 DVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVK-------------AHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred hhhccccchhhheeecCCCeEEEEEcCCCC--CCCccccc-------------ccCCceeEEEeCCCCCceEEeccCCCc
Confidence 999999887899999999999999999631 11113333 46899999999997655 55665 799
Q ss_pred EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
|++||+|....++..+.+|...+ +.+.|||. ...||+++.|+.+.|||+..-+.......+.
T Consensus 297 V~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~-- 359 (422)
T KOG0264|consen 297 VALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE-- 359 (422)
T ss_pred EEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc--
Confidence 99999998888999999999865 69999995 5678999999999999998643321111111
Q ss_pred ccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEE-EEecCCe-EEEEe
Q 011368 415 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI-ACANGNS-LFFHY 486 (487)
Q Consensus 415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~l-a~~s~~~-~~i~~ 486 (487)
++.. +++....+|...|.++.|+|..+++ +++++|+ +-||+
T Consensus 360 -----------dgpp--------------------EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 360 -----------DGPP--------------------ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred -----------cCCc--------------------ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 1111 2344455888899999999999874 5666554 77886
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.8e-27 Score=191.85 Aligned_cols=244 Identities=15% Similarity=0.216 Sum_probs=199.2
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
-.+|.++|+...++.+-...|+++.|-+-+|||.-++..+
T Consensus 55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel---------------------------------------- 94 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL---------------------------------------- 94 (334)
T ss_pred eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh----------------------------------------
Confidence 4569999999999999999999999999999998888652
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.++++..-|.+++| +.|.++|++|+.++.+||+|++..+...
T Consensus 95 hsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App------------------------------------ 136 (334)
T KOG0278|consen 95 HSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPP------------------------------------ 136 (334)
T ss_pred hhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCc------------------------------------
Confidence 22223367999999 6889999999999999999998654221
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
.. +.+|.+.|..+.|....+.|+++ +|++|++||.+++ ..++.+ ..+..|+++..+++|
T Consensus 137 ---------~E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg-t~v~sL--------~~~s~VtSlEvs~dG- 196 (334)
T KOG0278|consen 137 ---------KE-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG-TEVQSL--------EFNSPVTSLEVSQDG- 196 (334)
T ss_pred ---------hh-hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccC-cEEEEE--------ecCCCCcceeeccCC-
Confidence 11 38999999999999988999998 9999999999954 445443 234678999999998
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.+| +....+.|.+||..+-.++ +.++. ...|.+..++|+...+++|. |..++.||..+ +
T Consensus 197 ~il-Tia~gssV~Fwdaksf~~l----Ks~k~--------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~T-g 256 (334)
T KOG0278|consen 197 RIL-TIAYGSSVKFWDAKSFGLL----KSYKM--------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNT-G 256 (334)
T ss_pred CEE-EEecCceeEEeccccccce----eeccC--------------ccccccccccCCCceEEecCcceEEEEEeccC-C
Confidence 554 5556678999999987655 55555 46789999999998888875 69999999998 6
Q ss_pred ceeeee-ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 346 TPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 346 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
..+..+ ++|.+++ .++.|+|||...++||.||+|+||....++.
T Consensus 257 eEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 257 EEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 666665 7888765 6999999999999999999999999987643
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.6e-26 Score=207.25 Aligned_cols=273 Identities=14% Similarity=0.164 Sum_probs=215.4
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|..+++.+.. .++++++||++++|+-...+. .....+.+|.
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~-------------------------l~~~~~~~~~------ 57 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY-------------------------LETHAFEGPK------ 57 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCccc-------------------------ccceecccCc------
Confidence 45688899999887654 789999999999999765543 2234566676
Q ss_pred cccccccceeE-EEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 108 KSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 108 ~~~~~~~~I~~-v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
+-|.. +++.+ .++..+++|+.|.+|.+|...+.....+
T Consensus 58 ------g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~---------------------------------- 96 (745)
T KOG0301|consen 58 ------GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYT---------------------------------- 96 (745)
T ss_pred ------ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhh----------------------------------
Confidence 66766 88865 5666799999999999999988765544
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+.+|...|.+++...++. +++| .|.++++|...... ..+++|+..|++++.-|.+
T Consensus 97 -------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~----------~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 97 -------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV----------YSLQGHTASVWAVASLPEN 152 (745)
T ss_pred -------------hhccccceeeeecCCcCc-eEecccccceEEecchhhh----------cccCCcchheeeeeecCCC
Confidence 589999999999888887 8888 99999999876222 2468999999999999985
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 345 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~ 345 (487)
.+++|+.|.+|++|.- ++.. ++|.+ |..-|+.+++-+++.++-++.||.|++|++. +
T Consensus 153 --~~vTgsaDKtIklWk~--~~~l----~tf~g-------------HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~--g 209 (745)
T KOG0301|consen 153 --TYVTGSADKTIKLWKG--GTLL----KTFSG-------------HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD--G 209 (745)
T ss_pred --cEEeccCcceeeeccC--Cchh----hhhcc-------------chhheeeeEEecCCCeEeecCCceEEEEecc--C
Confidence 8999999999999975 3333 66776 4889999999999888877788999999993 8
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 425 (487)
..+.++.+|...+ .++...++++.++++++|++++||+.. ++.+.+.-....++++.+-+.
T Consensus 210 e~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~N- 270 (745)
T KOG0301|consen 210 EVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLN- 270 (745)
T ss_pred ceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeC-
Confidence 8999999999865 588877888999999999999999976 556666555555555555542
Q ss_pred ccccccccceeeecccce-ecC
Q 011368 426 RARRSSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 426 ~~~~~~~~~l~~g~~~~~-~~w 446 (487)
+. +++|+.||. ++|
T Consensus 271 -gD------Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 271 -GD------IVVGGSDGRVRVF 285 (745)
T ss_pred -CC------EEEeccCceEEEE
Confidence 22 566666666 555
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-26 Score=190.07 Aligned_cols=282 Identities=17% Similarity=0.222 Sum_probs=208.6
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
+..+|.+.|+.++-......+.+++.|.+.+||.++++.+ +.++.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C---------------------------L~~Y~GH~----- 190 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC---------------------------LATYTGHT----- 190 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccc---------------------------eeeecccc-----
Confidence 5667999999999988888999999999999999998876 58899999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe----eecCCCCceeeeeccccccccccccCCCCc
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
+.|++|.|+ +.+.++++++.|++..||...-.-.... ..+..+.+. ..+........+....+.
T Consensus 191 -------GSVNsikfh--~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~---e~sDe~~~d~d~~~~sD~ 258 (481)
T KOG0300|consen 191 -------GSVNSIKFH--NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE---EHSDEHNRDTDSSEKSDG 258 (481)
T ss_pred -------cceeeEEec--cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh---hcccccccccccccccCC
Confidence 999999996 5788999999999999997421100000 000000000 000000000000000000
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
- ....++.. +.+|...|.+..|-..|+.++++ .|.+..+||+++ +..+. .+.+|....+.++-
T Consensus 259 ~-------tiRvPl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt-ge~v~-------~LtGHd~ELtHcst 322 (481)
T KOG0300|consen 259 H-------TIRVPLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET-GEVVN-------ILTGHDSELTHCST 322 (481)
T ss_pred c-------eeeeeeee-eeccccceEehhhhcCcceeeeeeccccceeeeecc-Cceec-------cccCcchhcccccc
Confidence 0 00112222 48999999999999999999999 999999999995 44544 46899999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEe
Q 011368 262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWD 340 (487)
Q Consensus 262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd 340 (487)
+|.. .++++++.|.+.++||++.. ...+..|++ |...|+++.|.-+. .+++|+ |.+|++||
T Consensus 323 HptQ-rLVvTsSrDtTFRLWDFRea---I~sV~VFQG-------------HtdtVTS~vF~~dd-~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 323 HPTQ-RLVVTSSRDTTFRLWDFREA---IQSVAVFQG-------------HTDTVTSVVFNTDD-RVVSGSDDRTVKVWD 384 (481)
T ss_pred CCcc-eEEEEeccCceeEeccchhh---cceeeeecc-------------cccceeEEEEecCC-ceeecCCCceEEEee
Confidence 9998 99999999999999999842 222345555 68999999999765 566775 59999999
Q ss_pred CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
++....++.+++..... ..++.+..+..|+.--++..|++||++..
T Consensus 385 LrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 385 LRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred eccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecCCC
Confidence 99878888888766543 48899988889999999999999999754
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=186.65 Aligned_cols=248 Identities=14% Similarity=0.113 Sum_probs=192.4
Q ss_pred cccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--CCCCEEEEEeCCC
Q 011368 200 PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRG 276 (487)
Q Consensus 200 ~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg 276 (487)
-..|.+.|.++...--|+.|++| .|++|+|+.++.+++...+ .++.+|.++|+.++|.. .| .+||+++.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg 80 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDG 80 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence 36899999999888889999999 9999999999977653322 46889999999999974 67 9999999999
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEEE-eCCeEEEEeCCCCC--ceeeee
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSR-DYMNLKLWDIRMDS--TPVATF 351 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~-~d~~i~iwd~~~~~--~~~~~~ 351 (487)
.|.||.-.+++-. +...+ ..|...|++++|.|.+ -.|+++ +||.|.|.+.+..+ ..-...
T Consensus 81 kVIiWke~~g~w~--k~~e~-------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 81 KVIIWKEENGRWT--KAYEH-------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred eEEEEecCCCchh--hhhhh-------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 9999998887422 11223 3468999999999874 466666 57999999988642 123344
Q ss_pred ecccccccccccccCCCCcceeeEEEEcCC---C-----------CEEEEEcCCCcEEEEEeCCCCce-eEEEeccCCcc
Q 011368 352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGD---G-----------LHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNEN 416 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~-----------~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~v 416 (487)
..|...+ ++++|.|. | +.|++|+.|+.|+||+..++.-. ..+|.+|.+.|
T Consensus 146 ~aH~~Gv---------------nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 146 FAHEIGV---------------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV 210 (299)
T ss_pred hcccccc---------------ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence 5565543 68999885 4 57999999999999999986543 44599999999
Q ss_pred ccceEeeCCccccccccceeeecccce-ecCCCCCc-----cccccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 486 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~-----~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~ 486 (487)
+.+++.|.. +.. ...|+++++|+. .+|..+.. ...+..|...+.++.||+.|+.||+++ +|.+++|.
T Consensus 211 RDVAwaP~~-gl~--~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 211 RDVAWAPSV-GLP--KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhhcccc-CCC--ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 999999963 211 234999999999 99933322 223446888999999999999999777 55688884
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.4e-26 Score=184.82 Aligned_cols=257 Identities=17% Similarity=0.231 Sum_probs=199.2
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
.+|.+.|..+...-.|++|||++.|++|+|+.+.... ..+.+.+|.||+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~------------------------~s~ll~~L~Gh~------- 56 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG------------------------QSKLLAELTGHS------- 56 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC------------------------CceeeeEecCCC-------
Confidence 4588899999888899999999999999999988664 234678999999
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
++|..++|..-.-|.+|++++.||.|.||+-.+++..+...
T Consensus 57 -----GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e---------------------------------- 97 (299)
T KOG1332|consen 57 -----GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE---------------------------------- 97 (299)
T ss_pred -----CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh----------------------------------
Confidence 99999999632368999999999999999998886543311
Q ss_pred eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
...|...|++++|.|. |-.|+++ .||.|.+.+.+..+ .... .....|.-.|++++|.|.
T Consensus 98 -----------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~------ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 98 -----------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS------KIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred -----------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch------hhhhccccccceeeecCc
Confidence 2689999999999885 6678888 99999999998652 2221 124679999999999986
Q ss_pred ---C----------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC----CE
Q 011368 265 ---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG----QH 327 (487)
Q Consensus 265 ---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~----~~ 327 (487)
| .+.|++|+.|..|+||+..+++-.. .+. +.+|...|+.++|.|.- .+
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--e~~-------------l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--ERT-------------LEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhh--hhh-------------hhhcchhhhhhhhccccCCCcee
Confidence 2 1469999999999999998864211 122 34568999999999974 47
Q ss_pred EEEEe-CCeEEEEeCCCCCcee--eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 328 LLSRD-YMNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 328 l~s~~-d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
|++++ ||++.||..+.+..+- ..+...... ++.+.||..|..|+.++.|+.+.+|.-+..
T Consensus 226 iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~---------------~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 226 IASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDV---------------VWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred eEEecCCCcEEEEEecCccCcccccccccCCcc---------------eEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 88886 6999999876422221 111111111 269999999999999999999999987643
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.5e-25 Score=183.67 Aligned_cols=308 Identities=16% Similarity=0.181 Sum_probs=204.0
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
+-+|.+.|++++|+.||++||+++.|++|+||++++-+.. +-++++ .
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----------------------eHr~~R---~-------- 128 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----------------------EHRCIR---Q-------- 128 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----------------------hhhHhh---c--------
Confidence 4569999999999999999999999999999998875432 001110 0
Q ss_pred cccccccceeEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
.++. +..+.++|. ||-+-++ ++-...++++|.+...+--.. . ..
T Consensus 129 -nve~-dhpT~V~Fa--pDc~s~vv~~~~g~~l~vyk~~K~~dG~~---~----------------------------~~ 173 (420)
T KOG2096|consen 129 -NVEY-DHPTRVVFA--PDCKSVVVSVKRGNKLCVYKLVKKTDGSG---S----------------------------HH 173 (420)
T ss_pred -cccC-CCceEEEEC--CCcceEEEEEccCCEEEEEEeeecccCCC---C----------------------------cc
Confidence 0111 235889994 5655444 455667899998754321000 0 00
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
...|+ ...+-..|.-.+..+-...++.+|+++ .|..|.+|+++ ++.+..++. ....-+..+.+|+|
T Consensus 174 ~v~~D----~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idt-------nq~~n~~aavSP~G 240 (420)
T KOG2096|consen 174 FVHID----NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDT-------NQSSNYDAAVSPDG 240 (420)
T ss_pred ccccc----ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecc-------ccccccceeeCCCC
Confidence 00000 001125677778888888889999999 99999999999 455554432 23334567899999
Q ss_pred CCEEEEEeCCCeEEEEEccCCcc--ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR 342 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~ 342 (487)
.++++++..--|++|.+--++- .....+.|+ +.||...|..++|+|++..+++.+ ||++++||+.
T Consensus 241 -RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-----------LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 241 -RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-----------LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred -cEEEEecCCCCceEEEEEeccCcchhhhhhhhe-----------eccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9999999988899998743221 111112222 467899999999999999999986 6999999985
Q ss_pred CC------CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 343 MD------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 343 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
-. .+.+++...... +.......+.++|+|+.||... ...++++..++++...
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~-----------aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~---------- 366 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLH-----------AAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYP---------- 366 (420)
T ss_pred ceEecCCCchHhhcCCcchh-----------hcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccch----------
Confidence 31 112222211000 0000113799999999888654 4579999988774311
Q ss_pred ccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
..-.-|...|.+++|++||+++|++++..+.++.
T Consensus 367 ------------------------------------~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 367 ------------------------------------ELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred ------------------------------------hHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 0112355688999999999999999988877753
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.3e-25 Score=184.74 Aligned_cols=275 Identities=13% Similarity=0.180 Sum_probs=213.3
Q ss_pred EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecC
Q 011368 46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125 (487)
Q Consensus 46 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~ 125 (487)
.|++|++...|.=+++.-... .+ .....|...+.-.+.+|. ++|++++.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~--------------~~-~~s~~~~l~~lF~~~aH~------------~sitavAV---- 51 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK--------------GC-TDSVKPTLKPLFAFSAHA------------GSITALAV---- 51 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc--------------cc-ccccceeeeccccccccc------------cceeEEEe----
Confidence 367788877766666543320 00 112244555677788888 99999998
Q ss_pred CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC
Q 011368 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF 205 (487)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (487)
++.++++|+.|.+|+|||+........ +..|.+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~-----------------------------------------------ll~Hag 84 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGI-----------------------------------------------LLSHAG 84 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcc-----------------------------------------------eecccc
Confidence 478999999999999999988765443 368999
Q ss_pred ceeEEEeCCCCC--EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368 206 NINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 282 (487)
Q Consensus 206 ~v~~i~~s~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 282 (487)
.|+++.|.++-. .|++| .||.|.+|+... -.++. ++.+|.+.|+.++.+|.+ ++-++.+.|+.+++||
T Consensus 85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~-------slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLK-------SLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWN 155 (362)
T ss_pred ceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEee-------eecccccccceeEecCCC-ceEEEEcCCceeeeeh
Confidence 999999988764 88888 999999999983 33433 568999999999999999 9999999999999999
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 362 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 362 (487)
+-.++.- ..... ...-+.+.|+|.|.+++.+....|-+|.+.. ......+......
T Consensus 156 LV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~~~i~~~~r~----- 211 (362)
T KOG0294|consen 156 LVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVFREIENPKRI----- 211 (362)
T ss_pred hhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHhhhhhccccc-----
Confidence 9988743 22222 2344559999999988888778999999986 5555444433221
Q ss_pred cccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccc
Q 011368 363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~ 442 (487)
.++.|- ++..|++|++|+.|.+||.... .....+.+|...|..+.+.-...+.+ |++.+.||
T Consensus 212 -----------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~-----lvTaSSDG 273 (362)
T KOG0294|consen 212 -----------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEY-----LVTASSDG 273 (362)
T ss_pred -----------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCceE-----EEEeccCc
Confidence 245554 6778999999999999999875 66889999999999999877667777 99999999
Q ss_pred e-ecCCCC
Q 011368 443 A-HENSSS 449 (487)
Q Consensus 443 ~-~~w~~~ 449 (487)
. ++|+..
T Consensus 274 ~I~vWd~~ 281 (362)
T KOG0294|consen 274 FIKVWDID 281 (362)
T ss_pred eEEEEEcc
Confidence 9 999554
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=206.62 Aligned_cols=381 Identities=15% Similarity=0.129 Sum_probs=234.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEe--cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
|..+++|++||++|+|+|+|- ....++||++..... +.+|..|+
T Consensus 77 sRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~v---------------------------VAEfvdHK------- 122 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGV---------------------------VAEFVDHK------- 122 (1080)
T ss_pred cCcceeEEEEcCCCcEEEecccCCCccceeeeeccccc---------------------------hhhhhhcc-------
Confidence 567999999999999999985 666899999987654 57788898
Q ss_pred ccccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
-.|+|++| +|.++++++.+ .|-.|.+||.+.+.... .......+..+.|......+..++...
T Consensus 123 -----Y~vtcvaF--sp~~kyvvSVGsQHDMIVnv~dWr~N~~~a--snkiss~Vsav~fsEdgSYfvT~gnrH------ 187 (1080)
T KOG1408|consen 123 -----YNVTCVAF--SPGNKYVVSVGSQHDMIVNVNDWRVNSSGA--SNKISSVVSAVAFSEDGSYFVTSGNRH------ 187 (1080)
T ss_pred -----ccceeeee--cCCCcEEEeeccccceEEEhhhhhhccccc--ccccceeEEEEEEccCCceeeeeeeee------
Confidence 89999999 57889999876 46678888776442211 112223344444433333333222111
Q ss_pred eeeeeccceeeeecccCC--------C--------------ce---eEEEeCC---------------------------
Q 011368 187 HLEWTENMATKVYPHAHD--------F--------------NI---NSISNNS--------------------------- 214 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~--------~--------------~v---~~i~~s~--------------------------- 214 (487)
...|......+ +...-. + .+ .+.+.+.
T Consensus 188 vk~wyl~~~~K-ykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCI 266 (1080)
T KOG1408|consen 188 VKLWYLQIQSK-YKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCI 266 (1080)
T ss_pred EEEEEeecccc-ccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhcccccee
Confidence 11232222221 101100 0 00 0111111
Q ss_pred --CCCEEEEe-cCCeEEEEEccCCCceeEEe--------------ecCCCCCCCCC----CcEEEEEEecCCCCEEEEEe
Q 011368 215 --DCETFVSA-DDLRINLWNLEISDQCFNIV--------------DMKPSNMDDLT----EVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 215 --~~~~l~s~-~d~~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~----~~v~~v~~~p~~~~~l~~~~ 273 (487)
+.++|++| .+|.|++++..+-... .++ ... +.+.+.. ...-.+.|+|.. ..+.+..
T Consensus 267 cVs~r~I~cgCa~g~vrlFnp~tL~y~-~Tlpr~halg~d~a~~~q~~-~~~s~~~~a~fPD~IA~~Fdet~-~klscVY 343 (1080)
T KOG1408|consen 267 CVSSRLIACGCAKGMVRLFNPETLDYA-GTLPRSHALGSDTANLSQPE-PKNSESSPAIFPDAIACQFDETT-DKLSCVY 343 (1080)
T ss_pred eeecceEEEeeccceeeecCcchhhhc-cccccccccccchhhccccc-ccccccCcccCCceeEEEecCCC-ceEEEEE
Confidence 35677887 8899999877642211 111 000 0000000 113467799988 8999999
Q ss_pred CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc------------CCCCEEEEEeCCeEEEEeC
Q 011368 274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA------------NDGQHLLSRDYMNLKLWDI 341 (487)
Q Consensus 274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s------------~~~~~l~s~~d~~i~iwd~ 341 (487)
.|..|.+||++.-..+.+ ...+-- |..-|+.+.-- |.+-++.+.+|++||+|++
T Consensus 344 ndhSlYvWDvrD~~kvgk-~~s~ly-------------HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l 409 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGK-CSSMLY-------------HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL 409 (1080)
T ss_pred cCceEEEEeccccccccc-eeeeee-------------ccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence 999999999998543211 111222 34445554432 3344444446899999998
Q ss_pred CCCCceeee-----ee-----------------cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 342 RMDSTPVAT-----FK-----------------IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 342 ~~~~~~~~~-----~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
.. ...-.. +. .....+..-.....-|.-+++++++.||+|++||+|...|.++||++
T Consensus 410 ~~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 410 AF-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL 488 (1080)
T ss_pred cc-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEe
Confidence 74 111000 00 00000000011122344556789999999999999999999999999
Q ss_pred CCCCceeEEEeccCCccccceEeeCC-ccccccccceeeecccce-ecCCC---CCccccccccCCCeEEEEEcCCC--C
Q 011368 400 GVGSAGGITVEAGKNENRKPILQAAP-RARRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLAWHPTT--N 472 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~l~~g~~~~~-~~w~~---~~~~~~~~~~~~~v~~~~~spd~--~ 472 (487)
.+- ......++|...|.++.++... ..++ |+++++|.. ++++. ..+...+-+|...|++|.|--.| .
T Consensus 489 q~l-~~~~~~eAHesEilcLeyS~p~~~~kL-----LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 489 QEL-EYTCFMEAHESEILCLEYSFPVLTNKL-----LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred hhh-hhhhheecccceeEEEeecCchhhhHh-----hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 877 4477889999999999998532 2234 999999999 88844 34556677999999999999877 5
Q ss_pred EEEEecCCeEEEE
Q 011368 473 LIACANGNSLFFH 485 (487)
Q Consensus 473 ~la~~s~~~~~i~ 485 (487)
.+.+++.|...+|
T Consensus 563 ~MiscGADksimF 575 (1080)
T KOG1408|consen 563 KMISCGADKSIMF 575 (1080)
T ss_pred EEEeccCchhhhe
Confidence 6777776665544
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.8e-25 Score=208.29 Aligned_cols=270 Identities=13% Similarity=0.162 Sum_probs=205.0
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|+..-+.|+|.|+|++|++++.||.|++|+....... | .++..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---------------------P-----~ti~~~g------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---------------------P-----ETIDISG------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---------------------C-----chhhccC-------
Confidence 468889999999999999999999999999997655211 0 1122244
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++- .+.+|++++.+++|.+|.+..++...+
T Consensus 57 -----~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i------------------------------------ 91 (933)
T KOG1274|consen 57 -----ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI------------------------------------ 91 (933)
T ss_pred -----ceeEEEee----cccceEEeeccceEEEeeCCCCCccce------------------------------------
Confidence 67888875 355899999999999999998865433
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+....-++++++++-+|+++|.| +|-.|++-+........ .+.+|.++|.++.|+|++ +
T Consensus 92 -----------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~--------~lrgh~apVl~l~~~p~~-~ 151 (933)
T KOG1274|consen 92 -----------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK--------VLRGHDAPVLQLSYDPKG-N 151 (933)
T ss_pred -----------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--------eecccCCceeeeeEcCCC-C
Confidence 24567789999999999999999 99999999998665543 467999999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEeCCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDYMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~d~~i~iwd~~~~~~ 346 (487)
+||+.+-||.|++||+.++.+. +.+.+- .+. +-......+..++|+|+ |.+++.+.|+.|++|+... ..
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~----~tl~~v--~k~---n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we 221 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILS----KTLTGV--DKD---NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WE 221 (933)
T ss_pred EEEEEecCceEEEEEcccchhh----hhcccC--Ccc---ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-ce
Confidence 9999999999999999998755 333330 000 00011456788999999 5566667889999999986 77
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
....+....... . +..+.|||+|+|||+++.||.|.|||+++-+. ......|.+++|.|.
T Consensus 222 ~~f~Lr~~~~ss-----------~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 222 LQFKLRDKLSSS-----------K--FSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPN 281 (933)
T ss_pred eheeeccccccc-----------c--eEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCC
Confidence 777766543321 1 25899999999999999999999999987211 222344555555554
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=4.1e-25 Score=206.46 Aligned_cols=373 Identities=14% Similarity=0.143 Sum_probs=273.6
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
+...|+++.=+|-=..+|.|..+|+|.|+++..++. +.+|+-..
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---------------------------l~sFk~d~--------- 244 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---------------------------LMSFKQDW--------- 244 (910)
T ss_pred cccceeEeccCCcceEEEEeccCceEEEEEcccCcE---------------------------EEEEEccc---------
Confidence 457899999999888999999999999999998875 46676555
Q ss_pred ccccceeEEEEEecCCCcE-EEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
++|+.++| ..||.. +++|+..|.+.+||++..+........+...+....+.+...-++..+.+ .....+.-.
T Consensus 245 ---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D-nSlk~~vfD 318 (910)
T KOG1539|consen 245 ---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD-NSLKVWVFD 318 (910)
T ss_pred ---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC-CceeEEEee
Confidence 88999999 567765 55566779999999999887776654444445555555444444444433 222222221
Q ss_pred -eec-cceeeeecccCCCceeEEEeC-CCCCEEEEe-cCCeEEEEEccCCC------c--------eeE-----------
Q 011368 190 -WTE-NMATKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISD------Q--------CFN----------- 240 (487)
Q Consensus 190 -~~~-~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~-~d~~i~iwd~~~~~------~--------~~~----------- 240 (487)
-+. .+.++. -.||..+..|+.|. .+|.++.++ .|++.+.+++.... + ...
T Consensus 319 ~~dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 319 SGDGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred CCCCcchheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 111 122222 36888888888886 577777777 78776666543110 0 000
Q ss_pred ----------------------------Ee----------ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368 241 ----------------------------IV----------DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 282 (487)
Q Consensus 241 ----------------------------~~----------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 282 (487)
++ ..++..++.-...+++++.++.| ++.+.|+..|.|-+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEE
Confidence 00 01111222233568899999999 9999999999999999
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL 361 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 361 (487)
+++|-.. ..|.. -+.|..+|+.++...-++.+++++ +|.+++||... ..++..+......
T Consensus 477 mQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~~---- 537 (910)
T KOG1539|consen 477 MQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSSI---- 537 (910)
T ss_pred cccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeeccCCCc----
Confidence 9998643 33321 134688999999998888888874 69999999986 6666666654432
Q ss_pred ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeeccc
Q 011368 362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~ 441 (487)
..+..+.....++.+.+|-.|+++|..+. .....+.+|.+.++++.|+| ++++ |++++.|
T Consensus 538 ------------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~--DgrW-----lisasmD 597 (910)
T KOG1539|consen 538 ------------TGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSP--DGRW-----LISASMD 597 (910)
T ss_pred ------------ceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCC--CCcE-----EEEeecC
Confidence 36777778889999999999999999987 56889999999999999999 8999 9999999
Q ss_pred ce-ecCCCC-CccccccccCCCeEEEEEcCCCCEEEEec--CCeEEEEe
Q 011368 442 QA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY 486 (487)
Q Consensus 442 ~~-~~w~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~s--~~~~~i~~ 486 (487)
+. ++|+.. .........+.+.+.+.|||.|.+||++. .+++|+|.
T Consensus 598 ~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99 999542 34455667888999999999999999988 46799995
No 108
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.6e-25 Score=182.78 Aligned_cols=314 Identities=16% Similarity=0.209 Sum_probs=220.4
Q ss_pred cccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 30 ~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
.|.+.|+++...+ .|+|+++|+.||.|.+||++.....+.. ..+-+..| ..-...-.+|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s----~li~k~~c--------~v~~~h~~~Hk------- 101 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS----GLIAKHKC--------IVAKQHENGHK------- 101 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc----cceeheee--------eccccCCccce-------
Confidence 4889999999998 6899999999999999999765421000 00000000 00011123455
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
-.|..+.|.| -|...|.+++.|.++++||..+-+....
T Consensus 102 -----y~iss~~WyP-~DtGmFtssSFDhtlKVWDtnTlQ~a~~------------------------------------ 139 (397)
T KOG4283|consen 102 -----YAISSAIWYP-IDTGMFTSSSFDHTLKVWDTNTLQEAVD------------------------------------ 139 (397)
T ss_pred -----eeeeeeEEee-ecCceeecccccceEEEeecccceeeEE------------------------------------
Confidence 7899999998 4566889999999999999998765433
Q ss_pred eeeccceeeeecccCCCceeEEEeCC---CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
...++.|+.-+++| ...+||+| +|-.|++-|+..+. +. +.+.+|...|.++.|+|.
T Consensus 140 ------------F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~s-------H~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 140 ------------FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FS-------HTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ------------eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ce-------eeeccccCceEEEEeccC
Confidence 23456678888887 35577888 99999999999543 33 357899999999999998
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccc-cCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIR 342 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~ 342 (487)
..-.|++|+.||.|++||++...-+ ..++..|... +.....-..|.+.|..++|+.++.+++++ .|..+++|+..
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 8677889999999999999976333 2666666421 11112356789999999999999999986 57999999998
Q ss_pred CCCceeeeeec--ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccce
Q 011368 343 MDSTPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI 420 (487)
Q Consensus 343 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 420 (487)
.+...+..+.. |+.... +. ..+. +-+...++---.++.+.++++-.+ ..+..+..|-..+.+.+
T Consensus 277 ~G~ntl~~~g~~~~n~~~~-----------~~-~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k~i~c~~ 342 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTS-----------FA-VHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLKRINCAA 342 (397)
T ss_pred cCccccccccccccccccc-----------ce-EEEe-ecccceEEEEecCCeEEEEEccCc-eEEEeeecccceeeEEe
Confidence 74444433321 111110 00 0112 234444444445688899998887 45788888877788877
Q ss_pred EeeCCccccccccceeeecccce-ecCCC
Q 011368 421 LQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 421 ~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
+.| +.+. ..+|..|+. ..|..
T Consensus 343 ~~~--~fq~-----~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 343 YRP--DFEQ-----CFTGDMNGNIYMWSP 364 (397)
T ss_pred ecC--chhh-----hhccccCCccccccc
Confidence 777 4444 788999998 88844
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=213.09 Aligned_cols=240 Identities=16% Similarity=0.248 Sum_probs=199.3
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...+|.+.|.+++|..-+.+|++|+.|.+++|||..++++ ..++.+|.
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C---------------------------~~~l~gh~----- 291 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC---------------------------THSLQGHT----- 291 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE---------------------------EEEecCCC-----
Confidence 4677999999999998789999999999999999998876 58999999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
+.|.++.. .+.++++|+.|.+|++|++.++....+
T Consensus 292 -------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l---------------------------------- 326 (537)
T KOG0274|consen 292 -------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNL---------------------------------- 326 (537)
T ss_pred -------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEE----------------------------------
Confidence 88999987 345788899999999999998877665
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+.+|..+|+++..+ +.++++| .|++|++||+. ..+++. ++.+|...|+++.+.+.
T Consensus 327 -------------~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~-------sl~gH~~~V~sl~~~~~- 382 (537)
T KOG0274|consen 327 -------------LRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLK-------SLSGHTGRVYSLIVDSE- 382 (537)
T ss_pred -------------eccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeee-------eecCCcceEEEEEecCc-
Confidence 36699999999998 7899998 99999999999 556664 46899999999988874
Q ss_pred CCEEEEEeCCCeEEEEEccCC-ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
..+++|+.|+.|++||+++. +.. .++.+| ..-+..+.+ .+++|++++ |+.|++||...
T Consensus 383 -~~~~Sgs~D~~IkvWdl~~~~~c~----~tl~~h-------------~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 383 -NRLLSGSLDTTIKVWDLRTKRKCI----HTLQGH-------------TSLVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred -ceEEeeeeccceEeecCCchhhhh----hhhcCC-------------ccccccccc--ccceeEeccccccEEEeeccc
Confidence 58999999999999999998 443 666664 555655544 467888875 79999999987
Q ss_pred CCceeeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368 344 DSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 405 (487)
Q Consensus 344 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~ 405 (487)
+.+++.+.++ ...+ +.+++. ...+++++.||++++||++++...
T Consensus 443 -~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 443 -GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred -CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 8999999884 3422 355554 467889999999999999998654
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.3e-24 Score=188.80 Aligned_cols=353 Identities=13% Similarity=0.187 Sum_probs=240.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...|.|++|.++|+ +++|+.+|.|.||+..+.+. .+...+|.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~---------------------------~k~~~aH~---------- 287 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI---------------------------SKQVHAHD---------- 287 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE---------------------------EeEeeecC----------
Confidence 36799999999997 78999999999999765432 34444888
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+.|.+++.. .+|. |++|+.|+.|..||-.-.+...++-......+..+.---++ ++..... ..+..+..+
T Consensus 288 --ggv~~L~~l--r~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtr---N~iL~Gt~~ 357 (626)
T KOG2106|consen 288 --GGVFSLCML--RDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTR---NFILQGTLE 357 (626)
T ss_pred --CceEEEEEe--cCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEEeecc---ceEEEeeec
Confidence 999999984 5565 66699999999999332322222211111112222111111 1111111 111111111
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
. .......+|......++.+|+.+.+++| .|+.+++|+ + .+..+..+ ...++.|+.|+|.| .+|
T Consensus 358 ~--~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~~---------~~d~~~~~~fhpsg--~va 422 (626)
T KOG2106|consen 358 N--GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTKI---------IEDPAECADFHPSG--VVA 422 (626)
T ss_pred C--CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEEE---------ecCceeEeeccCcc--eEE
Confidence 1 1222236899999999999999999999 999999999 3 34333321 34678999999997 899
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~ 349 (487)
.|+..|...+.|.++..++ ..-.. ..+++.+.|+|+|.+||.|+ |+.|+||.+...+..+.
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv----~~~~d--------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLV----TIHTD--------------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred EeeccceEEEEecccceeE----EEEec--------------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 9999999999999986543 22111 46899999999999999997 69999999987666666
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE----------------E-Eecc
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI----------------T-VEAG 412 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~----------------~-~~~~ 412 (487)
....+.. . .++.+.||+|+++|.+-+.|-.|..|....-++... . ...+
T Consensus 485 r~~k~~g-s-------------~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 485 RVGKCSG-S-------------PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EeeeecC-c-------------eeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 6554443 1 126999999999999999999999994433211100 0 0123
Q ss_pred CCccccceEeeCCccccccccceeeecccce-ecC-----CCCCccccccccCCCeEEEEEcCCCCEEEEec-CCeEEEE
Q 011368 413 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-----SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH 485 (487)
Q Consensus 413 ~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w-----~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~ 485 (487)
...++.++-+. ...+ +++|...+. +++ +.......+.+|..-|+.++|.-+..++.+.+ +..++.|
T Consensus 551 ~t~i~a~~rs~--~~~~-----lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 551 GTDINAVARSH--CEKL-----LASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQW 623 (626)
T ss_pred CchHHHhhhhh--hhhh-----hhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEE
Confidence 33344444443 4555 888888888 888 33344556778999999999998887776555 5568888
Q ss_pred e
Q 011368 486 Y 486 (487)
Q Consensus 486 ~ 486 (487)
.
T Consensus 624 ~ 624 (626)
T KOG2106|consen 624 R 624 (626)
T ss_pred E
Confidence 6
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=9.3e-26 Score=199.12 Aligned_cols=286 Identities=15% Similarity=0.217 Sum_probs=219.5
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
..+.|...|.++++|...++++||++ |.|+|||+...... .++..+..-+
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLdcl~----- 463 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLDCLN----- 463 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------CccccccccC-----
Confidence 45778999999999999999999986 78999998754321 0112222221
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
-++-|.++.. .+||+.|++|+.-.++.|||+.........
T Consensus 464 -----rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprika--------------------------------- 503 (705)
T KOG0639|consen 464 -----RDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKA--------------------------------- 503 (705)
T ss_pred -----cccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhh---------------------------------
Confidence 1266778887 589999999999999999999865422110
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
-+....-.+++++.+||.++.++| .||.|.|||+. +...+ +.+++|.+.+.|+..+++|
T Consensus 504 ------------eltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~V-------rqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 504 ------------ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLV-------RQFQGHTDGASCIDISKDG 563 (705)
T ss_pred ------------hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceee-------ecccCCCCCceeEEecCCC
Confidence 023444567889999999999999 99999999999 44343 3589999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~ 344 (487)
..|-+|+-|++||.||++.++.+.+ ..| ...|.++.++|++.+|+.|.. +.+.|-...
T Consensus 564 -tklWTGGlDntvRcWDlregrqlqq--hdF----------------~SQIfSLg~cP~~dWlavGMens~vevlh~s-- 622 (705)
T KOG0639|consen 564 -TKLWTGGLDNTVRCWDLREGRQLQQ--HDF----------------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-- 622 (705)
T ss_pred -ceeecCCCccceeehhhhhhhhhhh--hhh----------------hhhheecccCCCccceeeecccCcEEEEecC--
Confidence 9999999999999999999864421 112 458999999999999999964 888887764
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
+.....+..|+..+ .++.|++-|+++++.+.|+.+..|...-|.. .|..
T Consensus 623 kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyGas---------------iFqs- 671 (705)
T KOG0639|consen 623 KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------IFQS- 671 (705)
T ss_pred CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccccc---------------eeec-
Confidence 45556666676633 5999999999999999999999999876622 1111
Q ss_pred CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEe
Q 011368 425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 486 (487)
Q Consensus 425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~ 486 (487)
.-..+|+++..|.|.++|++||++ .-.||.
T Consensus 672 --------------------------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 672 --------------------------------KESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred --------------------------------cccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 122378899999999999999977 455553
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.3e-25 Score=183.48 Aligned_cols=254 Identities=20% Similarity=0.298 Sum_probs=181.3
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (487)
Q Consensus 35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (487)
-.|+.|++.|.+||+|+.||.|.|||+.|... .+.+.+|. .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i---------------------------ar~lsaH~------------~ 66 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI---------------------------ARMLSAHV------------R 66 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch---------------------------hhhhhccc------------c
Confidence 78999999999999999999999999987654 36788998 8
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
+|.+++| +++|..|++++.|..|.+||+..|.+.+.
T Consensus 67 pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~r------------------------------------------ 102 (405)
T KOG1273|consen 67 PITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKR------------------------------------------ 102 (405)
T ss_pred ceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeE------------------------------------------
Confidence 9999999 68999999999999999999999875543
Q ss_pred eeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEE
Q 011368 195 ATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~ 271 (487)
....++|+...|+|. .+..+++ .+..-.+-++..+... .+ +..-. ..+....+..|++.| ++|++
T Consensus 103 ------irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~L---p~d~d~dln~sas~~~fdr~g-~yIit 170 (405)
T KOG1273|consen 103 ------IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VL---PKDDDGDLNSSASHGVFDRRG-KYIIT 170 (405)
T ss_pred ------EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--ec---cCCCccccccccccccccCCC-CEEEE
Confidence 345778999999984 3444444 5555566666632221 11 00111 112223445789999 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCC---C--
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD---S-- 345 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~---~-- 345 (487)
|...|.+.++|..+.+++ ..++.- -...|..+.++..|++|+.- +|..||.|+++.- +
T Consensus 171 GtsKGkllv~~a~t~e~v----as~rit------------s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECV----ASFRIT------------SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred ecCcceEEEEecchheee----eeeeec------------hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 999999999999987654 222220 02578999999999999885 6899999998621 1
Q ss_pred -cee--eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCceeEEEeccC
Q 011368 346 -TPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGK 413 (487)
Q Consensus 346 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~ 413 (487)
.+. ..++ ..+.+. . -..++||.+|.|+++|+. -..++||.-..| ..++.+.+.+
T Consensus 235 ~e~e~~~K~q---DvVNk~--------~--Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 235 GEVEPEHKLQ---DVVNKL--------Q--WKKCCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred CCcChhHHHH---HHHhhh--------h--hhheeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 111 1111 111000 0 037999999999998874 467999998887 4455555554
No 113
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.7e-25 Score=180.51 Aligned_cols=230 Identities=16% Similarity=0.242 Sum_probs=179.2
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
+.|.+|+| +.+|..|++++.|+++++|+++..+.....
T Consensus 21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~---------------------------------------- 58 (313)
T KOG1407|consen 21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKEL---------------------------------------- 58 (313)
T ss_pred hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhh----------------------------------------
Confidence 88999999 689999999999999999999877433211
Q ss_pred ceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
-..+|.+.|-.++|+| +...++++ .|.+|++||++.++.+..+ . ....-..+.|+|+| .++++
T Consensus 59 -----~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i--------~-~~~eni~i~wsp~g-~~~~~ 123 (313)
T KOG1407|consen 59 -----VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI--------E-TKGENINITWSPDG-EYIAV 123 (313)
T ss_pred -----cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe--------e-ccCcceEEEEcCCC-CEEEE
Confidence 1378999999999987 56778888 9999999999965544433 1 12223457899999 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 350 (487)
++.|..|.+.|.++.+.. ...+. ...+..++|+.++.+++.. +.|.|.|..... -+++..
T Consensus 124 ~~kdD~it~id~r~~~~~----~~~~~--------------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~s 184 (313)
T KOG1407|consen 124 GNKDDRITFIDARTYKIV----NEEQF--------------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQS 184 (313)
T ss_pred ecCcccEEEEEeccccee----ehhcc--------------cceeeeeeecCCCCEEEEecCCceEEEEeccc-cccccc
Confidence 999999999999987644 22222 3467888998777766654 459999999985 889999
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccc
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 430 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 430 (487)
+++|...- .++.|+|+|+++|+|+.|-.+.+||++.. .+...+..+.-||+.+.|+. ++++
T Consensus 185 i~AH~snC---------------icI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~--dg~~- 245 (313)
T KOG1407|consen 185 IKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSH--DGRM- 245 (313)
T ss_pred cccCCcce---------------EEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCceEEEEecc--Ccce-
Confidence 99998642 38999999999999999999999999865 44666666666777777765 6666
Q ss_pred cccceeeecccc
Q 011368 431 SLSNLTRGLYRQ 442 (487)
Q Consensus 431 ~~~~l~~g~~~~ 442 (487)
|++|+.|.
T Consensus 246 ----lASaSEDh 253 (313)
T KOG1407|consen 246 ----LASASEDH 253 (313)
T ss_pred ----eeccCccc
Confidence 66666664
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.3e-24 Score=177.73 Aligned_cols=211 Identities=19% Similarity=0.240 Sum_probs=164.5
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|+++.| +.+|.++++++.|.+++|||..+++..+.
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~t----------------------------------------- 51 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKT----------------------------------------- 51 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeE-----------------------------------------
Confidence 78999999 68999999999999999999999987665
Q ss_pred ceeeeecccCCCceeEEEeCCCCC-EEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCE-TFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
+..+...+..++|....+ .+.+. .|.+|+..++.+ .+.++ .+.||...|.+++.+|-+ ..++
T Consensus 52 ------i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-NkylR-------YF~GH~~~V~sL~~sP~~-d~Fl 116 (311)
T KOG1446|consen 52 ------INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-NKYLR-------YFPGHKKRVNSLSVSPKD-DTFL 116 (311)
T ss_pred ------eecccccccEEEEecCCceEEEccCCCCCceEEEEeec-CceEE-------EcCCCCceEEEEEecCCC-CeEE
Confidence 256667788888865444 44444 699999999994 44554 479999999999999999 9999
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCC-Ccee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-STPV 348 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~-~~~~ 348 (487)
+++.|++|++||++..+.. -.+.. ..-..++|.|.|-++|++.. +.|++||++.- ..+.
T Consensus 117 S~S~D~tvrLWDlR~~~cq----g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 117 SSSLDKTVRLWDLRVKKCQ----GLLNL---------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred ecccCCeEEeeEecCCCCc----eEEec---------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence 9999999999999976532 22222 23456789999999999876 69999999874 4556
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
..+....... + ..+.+.|||||++|+.++..+.+++.|.-+|. .+.++..+..
T Consensus 178 ~tf~i~~~~~----------~--ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~ 230 (311)
T KOG1446|consen 178 TTFSITDNDE----------A--EWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPN 230 (311)
T ss_pred eeEccCCCCc----------c--ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccC
Confidence 6655442211 1 12589999999999999999999999999884 5566655543
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.4e-25 Score=198.35 Aligned_cols=331 Identities=16% Similarity=0.281 Sum_probs=227.3
Q ss_pred hhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee
Q 011368 18 QAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (487)
Q Consensus 18 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (487)
+.|-..+.....+|++.|.||...|.|.+||+|+.||+|+||.+.++.+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc------------------------------- 434 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC------------------------------- 434 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-------------------------------
Confidence 3333334445567999999999999999999999999999999999865
Q ss_pred cCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccccc
Q 011368 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (487)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (487)
++++.+++.|.+|+|+|.++-..||++-.+. +.|-+..-|..+... +....+...
T Consensus 435 ---------vr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~---------------~t~ell~~~ 489 (733)
T KOG0650|consen 435 ---------VRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG---------------PTKELLASA 489 (733)
T ss_pred ---------EEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc---------------chhhhhhcC
Confidence 2333344779999998877766666665555 666655444211110 001111111
Q ss_pred CCCCcceeeeeeeecc------ceeeeecccCCCceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCceeEEeecCCC
Q 011368 178 NPPSFAHGYHLEWTEN------MATKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPS 247 (487)
Q Consensus 178 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~ 247 (487)
-...........|... ..+.+ ...|...|+.+.|+..|.+|++. ....|.|.++...... .
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--------~ 560 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCI-VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--------S 560 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEE-EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--------C
Confidence 1111111133344432 11122 25789999999999999999995 3467889998843321 1
Q ss_pred CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368 248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 327 (487)
Q Consensus 248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 327 (487)
.+....+.|.++.|+|.. .+|++++. ..|+|||+..+.+.. +.+.+ ...|..++.+|.|..
T Consensus 561 PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvK---kL~tg--------------~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 561 PFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVK---KLLTG--------------SKWISSMSIHPNGDN 621 (733)
T ss_pred chhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHH---HHhcC--------------CeeeeeeeecCCCCe
Confidence 344456779999999998 67776664 479999999866542 22333 458999999999999
Q ss_pred EEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368 328 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 406 (487)
Q Consensus 328 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~ 406 (487)
|+.|+ |+.+..||+....++.+.+..|...+ ++++|++.-.++++|+.||++.|+.-.--...
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl- 685 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL- 685 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCCcEEEEeeeeehhh-
Confidence 99887 59999999988778999999998755 69999999999999999999999874321110
Q ss_pred EEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCC----CeEEEEEcCCCCEEEEecCC-e
Q 011368 407 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS----KLLHLAWHPTTNLIACANGN-S 481 (487)
Q Consensus 407 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~----~v~~~~~spd~~~la~~s~~-~ 481 (487)
.......| +..+.+|.. .|.++.|||...+|++++.| .
T Consensus 686 ---------~qnpliVP----------------------------lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t 728 (733)
T KOG0650|consen 686 ---------LQNPLIVP----------------------------LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT 728 (733)
T ss_pred ---------hcCCceEe----------------------------eeeccCceeecccceEeecccCCCceEEecCCCce
Confidence 00111111 112223333 58899999999999998877 4
Q ss_pred EEEE
Q 011368 482 LFFH 485 (487)
Q Consensus 482 ~~i~ 485 (487)
+.+|
T Consensus 729 irlf 732 (733)
T KOG0650|consen 729 IRLF 732 (733)
T ss_pred EEee
Confidence 7777
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.9e-26 Score=198.75 Aligned_cols=271 Identities=18% Similarity=0.267 Sum_probs=211.9
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
+.+..+.|. ++...|++++.|..|++|++..++.....
T Consensus 176 gev~~v~~l--~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~---------------------------------------- 213 (459)
T KOG0288|consen 176 GEVHDVEFL--RNSDTLATGGSDRIIKLWNVLGEKSELIS---------------------------------------- 213 (459)
T ss_pred cccceeEEc--cCcchhhhcchhhhhhhhhcccchhhhhh----------------------------------------
Confidence 889999995 56679999999999999999877622110
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.+.+..++|+.+.|.+++++++++ .|+.+++|++.. .+.. .++.+|.+.|+++.|.... ..+++|
T Consensus 214 -----tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~-------~TLsGHtdkVt~ak~~~~~-~~vVsg 279 (459)
T KOG0288|consen 214 -----TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLR-------HTLSGHTDKVTAAKFKLSH-SRVVSG 279 (459)
T ss_pred -----hhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhh-------hhhcccccceeeehhhccc-cceeec
Confidence 146778899999999999998888 999999999994 3333 4678999999999999876 569999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~ 351 (487)
+.|.+|++||+....+. +..-. ...+..|+.+ ...+++|. |++|++||.++ ..+....
T Consensus 280 s~DRtiK~WDl~k~~C~----kt~l~--------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs-~~~~~sv 338 (459)
T KOG0288|consen 280 SADRTIKLWDLQKAYCS----KTVLP--------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRS-ADKTRSV 338 (459)
T ss_pred cccchhhhhhhhhhhee----ccccc--------------cccccceEec--ceeeeecccccceEEEeccC-CceeeEe
Confidence 99999999999986543 22222 2567777776 45666774 69999999997 7888888
Q ss_pred ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc----CCccccceEeeCCcc
Q 011368 352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG----KNENRKPILQAAPRA 427 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~ 427 (487)
..+... +++..+++|..|.+.+.|.++.+.|+.+. ...+.+.+. ....+.+.|+| ++
T Consensus 339 ~~gg~v----------------tSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSp--d~ 399 (459)
T KOG0288|consen 339 PLGGRV----------------TSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSP--DG 399 (459)
T ss_pred ecCcce----------------eeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECC--CC
Confidence 777632 69999999999999999999999999987 445555432 23378899998 67
Q ss_pred ccccccceeeecccce-ecCCC--CCccccccc-cCC-CeEEEEEcCCCCEEEEecCCe-EEEE
Q 011368 428 RRSSLSNLTRGLYRQA-HENSS--SGHHELSYN-LSS-KLLHLAWHPTTNLIACANGNS-LFFH 485 (487)
Q Consensus 428 ~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~-~~~-~v~~~~~spd~~~la~~s~~~-~~i~ 485 (487)
.+ +++|+.|+. ++|+. ++....... +.. .|++++|+|.|..|++++.+. ..+|
T Consensus 400 ~Y-----vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 400 SY-----VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ce-----eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 77 999999999 99944 333333222 222 699999999999999988654 6666
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.5e-25 Score=213.37 Aligned_cols=270 Identities=15% Similarity=0.241 Sum_probs=198.0
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|+|+.|+|||++||+|+.|+.|.||+....-. ...+.. .+ .......++.+..+.+|.
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~---~~~fgs----~g--~~~~vE~wk~~~~l~~H~------ 129 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS---GTVFGS----TG--GAKNVESWKVVSILRGHD------ 129 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC---cccccc----cc--cccccceeeEEEEEecCC------
Confidence 456899999999999999999999999999999873100 000000 00 011233567889999999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|..++| +|++.+|++++.|++|.+||..+.+....
T Consensus 130 ------~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~~v----------------------------------- 166 (942)
T KOG0973|consen 130 ------SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELLKV----------------------------------- 166 (942)
T ss_pred ------Cccceecc--CCCccEEEEecccceEEEEccccceeeee-----------------------------------
Confidence 88999999 67999999999999999999998865544
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.+|.+.|-.+.|.|-|++||+- +|++|++|++.. -.+.+.+..+ ..-..-......+.|+|||
T Consensus 167 ------------l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~p-f~~~~~~T~f~RlSWSPDG- 231 (942)
T KOG0973|consen 167 ------------LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKP-FEESPLTTFFLRLSWSPDG- 231 (942)
T ss_pred ------------eecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccc-hhhCCCcceeeecccCCCc-
Confidence 48999999999999999999998 999999999774 2333333211 1111223457889999999
Q ss_pred CEEEEEeC----CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC------C---------C-
Q 011368 267 NLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND------G---------Q- 326 (487)
Q Consensus 267 ~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~------~---------~- 326 (487)
.+|++... -..+.|.+-.+-+.- .. +-||..++.++.|+|. . .
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk~~----~~-------------LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWKVD----KD-------------LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred CeecchhhccCCcceeEEEecCCceee----ee-------------eecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 99998754 235666665443211 22 3457899999999872 1 1
Q ss_pred -EEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 327 -HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 327 -~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+|+|+ |++|.||.... .+++.....-... + |.+++|+|||..|.++|.||+|.+..++..
T Consensus 295 ~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~-----------S---I~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK-----------S---IVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEEEecCCccEEEEecCC-CCchhhhhhhhcC-----------c---eeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 344565 79999999876 5665554322111 1 259999999999999999999999999864
No 118
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=5.8e-25 Score=183.90 Aligned_cols=290 Identities=16% Similarity=0.223 Sum_probs=208.9
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCc-ceeEeeecCCCccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE-YRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
-...+.|||||.-|.+-+.|..+++|++...... +... .+. .+...+++-..
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys-----------~~~~-----~~~~~~~~~~~r~~e----------- 103 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYS-----------KKAD-----GPLNFSKHLSYRYQE----------- 103 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcc-----------cCCC-----CccccccceeEEecc-----------
Confidence 3567899999999999999999999997532210 0000 000 00001111011
Q ss_pred ccceeEEEEEe-----cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 113 EEKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 113 ~~~I~~v~~~~-----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.+.|..-+|-+ .|+..++++.+.+.-|++||.-+|+......
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~--------------------------------- 150 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------------------------------- 150 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh---------------------------------
Confidence 15577777754 4677899999999999999999998765421
Q ss_pred eeeeccceeeeecccCCC---ceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 188 LEWTENMATKVYPHAHDF---NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~---~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
...|.. ...+++|+|||..|++|....|+++|+..++.....+......-.+..+.+.|++|+|.
T Consensus 151 ------------~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~ 218 (406)
T KOG2919|consen 151 ------------AYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPM 218 (406)
T ss_pred ------------hhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCC
Confidence 022332 34689999999999999999999999965665443321111112344678899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR 342 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~ 342 (487)
.+..+++++....+-||.-..+..+ ..+.+ |.+.|+.+.|.++|+.|++|. +..|-.||++
T Consensus 219 ~~~~~a~gsY~q~~giy~~~~~~pl----~llgg-------------h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 219 DSKTLAVGSYGQRVGIYNDDGRRPL----QLLGG-------------HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred CCcceeeecccceeeeEecCCCCce----eeecc-------------cCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 8679999999999999887776654 44444 589999999999999999986 5899999999
Q ss_pred CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
....++..+..|.... ++-| -....|++++|++|+.||.|++||++........+..+...++.+++.
T Consensus 282 ~~~~pv~~L~rhv~~T--------NQRI----~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsln 349 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDT--------NQRI----LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLN 349 (406)
T ss_pred hccchhhhhhhhccCc--------cceE----EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecC
Confidence 8778888887776511 1111 356678999999999999999999998556566777777777777777
Q ss_pred eC
Q 011368 423 AA 424 (487)
Q Consensus 423 ~~ 424 (487)
|.
T Consensus 350 P~ 351 (406)
T KOG2919|consen 350 PI 351 (406)
T ss_pred cc
Confidence 64
No 119
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=9.2e-25 Score=189.56 Aligned_cols=245 Identities=16% Similarity=0.225 Sum_probs=197.3
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
.+|...|+.+.|+|+...+++++.|-.|+||....... ......|+
T Consensus 258 ~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------------------------~~~~~~h~------- 303 (506)
T KOG0289|consen 258 KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------------------------PTSSRPHE------- 303 (506)
T ss_pred cCcceEEEEEEeccchhheeecCCcceEEeeccccccC---------------------------cccccccc-------
Confidence 45888999999999999999999999999999876544 25677787
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
++|+.+..+ +.|+||++++.|++..+.|+.++........
T Consensus 304 -----~~V~~ls~h--~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~--------------------------------- 343 (506)
T KOG0289|consen 304 -----EPVTGLSLH--PTGEYLLSASNDGTWAFSDISSGSQLTVVSD--------------------------------- 343 (506)
T ss_pred -----ccceeeeec--cCCcEEEEecCCceEEEEEccCCcEEEEEee---------------------------------
Confidence 999999995 6799999999999999999999886654210
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
....-.+++.+|+|||..|.+| .|+.|+|||+..+... ..+.+|.++|..++|+.+| .
T Consensus 344 ------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~--------a~Fpght~~vk~i~FsENG-Y 402 (506)
T KOG0289|consen 344 ------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV--------AKFPGHTGPVKAISFSENG-Y 402 (506)
T ss_pred ------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc--------ccCCCCCCceeEEEeccCc-e
Confidence 1223458999999999999999 9999999999965532 4688999999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC-CC
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM-DS 345 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~-~~ 345 (487)
+|+++.+|+.|++||+|..+.. +.+... ....+.++.|.+.|.+|+.++ +=.|++++-.+ ..
T Consensus 403 ~Lat~add~~V~lwDLRKl~n~----kt~~l~------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 403 WLATAADDGSVKLWDLRKLKNF----KTIQLD------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEEEEecCCeEEEEEehhhccc----ceeecc------------ccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 9999999999999999986543 444430 023699999999999999874 34555555322 24
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
..+..+..|.+.. +.+.|....++++++|.|..++++.+
T Consensus 467 ~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence 5666666666543 58999999999999999999888764
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.9e-25 Score=192.74 Aligned_cols=250 Identities=14% Similarity=0.181 Sum_probs=193.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|...|.+++.|+||+|||+|+.|..|.||+.++.+. +..+++|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh---------------------------v~~~~ghr-------- 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH---------------------------VKVFKGHR-------- 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccch---------------------------hhcccccc--------
Confidence 7899999999999999999999999999999998875 46689999
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+.|.+++|- .....+++++.|++|++|+++.......
T Consensus 245 ----~~V~~L~fr--~gt~~lys~s~Drsvkvw~~~~~s~vet------------------------------------- 281 (479)
T KOG0299|consen 245 ----GAVSSLAFR--KGTSELYSASADRSVKVWSIDQLSYVET------------------------------------- 281 (479)
T ss_pred ----cceeeeeee--cCccceeeeecCCceEEEehhHhHHHHH-------------------------------------
Confidence 999999994 4556799999999999999987664433
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.+|.+.|..|....-++.+.+| .|+++++|++....+.+ +.++.+.+.|++|-.+ ..
T Consensus 282 ----------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~sidcv~~In~--~H 340 (479)
T KOG0299|consen 282 ----------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEGSIDCVAFIND--EH 340 (479)
T ss_pred ----------HhCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCCCeeeEEEecc--cc
Confidence 47999999999998888888888 99999999996443332 4678889999999876 68
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
|++|+.+|.|.+|++...+.+. ..-..|...+.... .++..+|++++..|...++++|+ +|.|++|-+....+.
T Consensus 341 fvsGSdnG~IaLWs~~KKkplf---~~~~AHgv~~~~~~--~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 341 FVSGSDNGSIALWSLLKKKPLF---TSRLAHGVIPELDP--VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred eeeccCCceEEEeeecccCcee---EeeccccccCCccc--cccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 9999999999999999877542 12223333333211 12235999999999999999997 599999999864333
Q ss_pred ---eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEe
Q 011368 348 ---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSH 399 (487)
Q Consensus 348 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~ 399 (487)
+..+.. .+. |++++|+++|+.|++| +....+--|-.
T Consensus 416 i~~l~~ls~-~Gf---------------VNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 416 INLLYSLSL-VGF---------------VNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred cceeeeccc-ccE---------------EEEEEEccCCCEEEEecccccccceeeE
Confidence 333331 121 2699999999976665 34444433433
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=208.42 Aligned_cols=245 Identities=19% Similarity=0.319 Sum_probs=195.6
Q ss_pred EEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 35 VSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 35 V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
+..+.|+. +.++||+++..|.|.+||+...- ..+.+..|..|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------------rnk~l~~f~EH~------------ 133 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------------RNKLLTVFNEHE------------ 133 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc------------------------cchhhhHhhhhc------------
Confidence 44566764 45899999999999999987521 122356788898
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..++++.|++ ....+|++|+.||+|++||++..+-...
T Consensus 134 Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S~~t----------------------------------------- 171 (839)
T KOG0269|consen 134 RSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKKSKST----------------------------------------- 171 (839)
T ss_pred cceeeeeecc-CCccEEEecCCCceEEEEeeeccccccc-----------------------------------------
Confidence 8999999985 5567999999999999999998764433
Q ss_pred ceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
+.+....|+++.|+| .+..|+++ +.|.+++||++...++.. .+.+|.++|.|+.|+|++ .+||+
T Consensus 172 ------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~-------k~~AH~GpV~c~nwhPnr-~~lAT 237 (839)
T KOG0269|consen 172 ------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK-------KLTAHNGPVLCLNWHPNR-EWLAT 237 (839)
T ss_pred ------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-------HhhcccCceEEEeecCCC-ceeee
Confidence 256778899999999 57788888 999999999997776653 478999999999999988 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEEe---CCeEEEEeCCCCCce
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD---YMNLKLWDIRMDSTP 347 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~---d~~i~iwd~~~~~~~ 347 (487)
|+.|+.|+|||+.+.+.. ...++.. ..+|.++.|-|+..+ |++++ |-.|+|||++.+.-+
T Consensus 238 GGRDK~vkiWd~t~~~~~--~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSRAK--PKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred cCCCccEEEEeccCCCcc--ceeEEee--------------cceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 999999999999875422 2233333 478999999998765 44543 589999999988888
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCC
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
..++..|...+ +.++|.. |...+.+++.||.|..-.+++.
T Consensus 302 ~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99999998765 5888865 5667889999998876655554
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=180.94 Aligned_cols=277 Identities=16% Similarity=0.250 Sum_probs=212.4
Q ss_pred CCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCC-----Ccccchhhhhccccc--------cccCC
Q 011368 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP-----NQHISRSELEKQMDF--------TSTSH 88 (487)
Q Consensus 22 ~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~--------~~~~~ 88 (487)
..+.....+|.+.|+||+|++.+.++++++.|++-.||...-.-..| .....-.+++..+.. .+..+
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 45566778899999999999999999999999999999833211111 111112223222221 11122
Q ss_pred CcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccc
Q 011368 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (487)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (487)
.-..++..|.+|. +.|.+..|. ..|+.+++++.|.+..+||+++++....
T Consensus 260 tiRvPl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~---------------- 309 (481)
T KOG0300|consen 260 TIRVPLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNI---------------- 309 (481)
T ss_pred eeeeeeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceecc----------------
Confidence 2234678899998 889999995 6789999999999999999999987765
Q ss_pred cccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC
Q 011368 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 247 (487)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 247 (487)
+.+|....+.++-+|..++++++ .|.+.++||++..-+.+.
T Consensus 310 -------------------------------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~------- 351 (481)
T KOG0300|consen 310 -------------------------------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVA------- 351 (481)
T ss_pred -------------------------------ccCcchhccccccCCcceEEEEeccCceeEeccchhhcceee-------
Confidence 58999999999999999999999 999999999994444443
Q ss_pred CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368 248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 327 (487)
Q Consensus 248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 327 (487)
.+++|...|+++.|..+ ..+++|+.|.+|++||+++.+.. +.++.. ..+++.++.+..+..
T Consensus 352 VFQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsp---lATIRt--------------dS~~NRvavs~g~~i 412 (481)
T KOG0300|consen 352 VFQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSP---LATIRT--------------DSPANRVAVSKGHPI 412 (481)
T ss_pred eecccccceeEEEEecC--CceeecCCCceEEEeeeccccCc---ceeeec--------------CCccceeEeecCCce
Confidence 47899999999999987 57999999999999999986543 244444 468999999988888
Q ss_pred EEEEeC-CeEEEEeCCCCCceeeee-----ecccccccccccccCCCCcceeeEEEEcCCC--CEEEEEcCCCcEEEEEe
Q 011368 328 LLSRDY-MNLKLWDIRMDSTPVATF-----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LHFATGSYSNLLRIFSH 399 (487)
Q Consensus 328 l~s~~d-~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~--~~l~sg~~dg~i~iwd~ 399 (487)
|+.-.| ..|++||+. +..+..+ ++|...+ ++++|..+. .-|++++.|..+.-|++
T Consensus 413 IAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRMV---------------~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRMV---------------TCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred EEeccCCceEEEEecC--CCccccCCcccccccceee---------------eeeeccccCcccccccccccceeeeeEe
Confidence 888766 999999996 3434333 3555433 688998653 45889999999999998
Q ss_pred CCC
Q 011368 400 GVG 402 (487)
Q Consensus 400 ~~~ 402 (487)
...
T Consensus 476 n~p 478 (481)
T KOG0300|consen 476 NTP 478 (481)
T ss_pred ccc
Confidence 764
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.7e-23 Score=162.52 Aligned_cols=308 Identities=15% Similarity=0.189 Sum_probs=216.7
Q ss_pred cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
|+.+..++-...|.+++|+ |.|.+.+.|+..++++|-....-. +..-.+....+++
T Consensus 23 f~~i~~l~dsqairav~fh--p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~--------------------- 79 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFH--PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS--------------------- 79 (350)
T ss_pred eEEEEEecchhheeeEEec--CCCceEEeccCCceEEEEccccccCcccccccccCCCe---------------------
Confidence 4455555555889999995 679999999999999987543211 0000111111100
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
..+.+ ...|.+.|+|.+|+|+|++|++| .|++|++..++... +..+ .....+.-|.+.|..++|
T Consensus 80 ----------v~~kr--~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt-~~~~--g~dle~nmhdgtirdl~f 144 (350)
T KOG0641|consen 80 ----------VLCKR--NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADT-CNAT--GHDLEFNMHDGTIRDLAF 144 (350)
T ss_pred ----------EEeee--ccccCccEEEEEecCccCeEEecCCCceEEEEeccccc-cccc--CcceeeeecCCceeeeEE
Confidence 01222 25789999999999999999999 99999998776322 1110 111245678999999999
Q ss_pred ecC---CCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeE
Q 011368 262 HPI---YCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 336 (487)
Q Consensus 262 ~p~---~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i 336 (487)
-.+ +..+|++++. |..|.+-|...++.. +.+.+ |.+-|.++ ++-+|-++++|+ |.+|
T Consensus 145 ld~~~s~~~il~s~gagdc~iy~tdc~~g~~~----~a~sg-------------htghilal-yswn~~m~~sgsqdkti 206 (350)
T KOG0641|consen 145 LDDPESGGAILASAGAGDCKIYITDCGRGQGF----HALSG-------------HTGHILAL-YSWNGAMFASGSQDKTI 206 (350)
T ss_pred ecCCCcCceEEEecCCCcceEEEeecCCCCcc----eeecC-------------CcccEEEE-EEecCcEEEccCCCceE
Confidence 743 2267777664 778888888887654 55555 46667665 344578889987 5999
Q ss_pred EEEeCCCCCceeeeeecc--cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 337 KLWDIRMDSTPVATFKIH--EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
++||++. ..++.++... .... .-..|.+++..|.|++|++|-.|....+||++.+ ..++.+..|..
T Consensus 207 rfwdlrv-~~~v~~l~~~~~~~gl----------essavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~f~phsa 274 (350)
T KOG0641|consen 207 RFWDLRV-NSCVNTLDNDFHDGGL----------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSA 274 (350)
T ss_pred EEEeeec-cceeeeccCcccCCCc----------ccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeeeeCCCcc
Confidence 9999997 7777766432 2111 1113468999999999999999999999999877 56889999999
Q ss_pred ccccceEeeCCccccccccceeeecccce-ecCCCCCcc-c-----cccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368 415 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-E-----LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 486 (487)
Q Consensus 415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~-~-----~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~ 486 (487)
.|+++-|+| ...+ +.+++.|.+ ++-+....+ . ....|..++..+.|+|..--+.+.+ +....+|.
T Consensus 275 dir~vrfsp--~a~y-----llt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 275 DIRCVRFSP--GAHY-----LLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ceeEEEeCC--CceE-----EEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 999999999 4566 899999988 776332222 1 1236888888999999886666666 55577774
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=6.9e-24 Score=185.45 Aligned_cols=261 Identities=18% Similarity=0.260 Sum_probs=194.1
Q ss_pred ccCcEEEEEEcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 31 h~~~V~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
|..+|++++|+|.. +++|+|+..|+|-+||+.+.+. ...-+..+..|.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------------d~d~v~~f~~hs------- 234 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------------DKDGVYLFTPHS------- 234 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------ccCceEEeccCC-------
Confidence 57899999999965 5889999999999999975443 444567788898
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
.+|.++.|+| .+...+++.+.||+|++-|++++....+..
T Consensus 235 -----~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s---------------------------------- 274 (498)
T KOG4328|consen 235 -----GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLS---------------------------------- 274 (498)
T ss_pred -----ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhh----------------------------------
Confidence 9999999987 455678999999999999998875443311
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+......+..+.|+.+...++.+ .=|...+||+++.+..... +.-|...|.+|+++|..+.
T Consensus 275 -----------~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 275 -----------LDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHKKKITSVALNPVCPW 336 (498)
T ss_pred -----------cCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhhcccceeecCCCCch
Confidence 11234456778888877777777 6669999999987765543 4557779999999999989
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-EeCCeEEEEeCC---C
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKLWDIR---M 343 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~d~~i~iwd~~---~ 343 (487)
+||+++.|++.+|||+++-...... .+. ...|...|.+..|||.+-.|++ +.|+.|+|||.. .
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp--~ls-----------t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASP--FLS-----------TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCc--cee-----------cccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 9999999999999999974322110 111 2457889999999998776776 457999999983 1
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
...+...+. |...-. --.......|.|+..+|++|-.-..|-|+|-+.+
T Consensus 404 ~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 404 KDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred cCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 133344433 221100 0001137899999999999999999999997766
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=182.88 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=209.8
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+|+++.|+|....|.+++.||+++||.++..... .+.++.-..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~---------- 257 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK---------- 257 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence 568999999999999999999999999999876542 223333333
Q ss_pred cccceeEEEEEecCCCc-EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
.+|.+.+|. |+|. .+++++....++.||+.+.+..++...
T Consensus 258 --fPi~~a~f~--p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~----------------------------------- 298 (514)
T KOG2055|consen 258 --FPIQKAEFA--PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP----------------------------------- 298 (514)
T ss_pred --Cccceeeec--CCCceEEEecccceEEEEeeccccccccccCC-----------------------------------
Confidence 679999995 6787 889999999999999998887665321
Q ss_pred eccceeeeecccC-CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAH-DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
.++ ...+.....+|++++|+.. ..|.|.+....++.. +..+ ...+.|..+.|+.++ +.
T Consensus 299 ----------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~--------KieG~v~~~~fsSds-k~ 358 (514)
T KOG2055|consen 299 ----------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSF--------KIEGVVSDFTFSSDS-KE 358 (514)
T ss_pred ----------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hhee--------eeccEEeeEEEecCC-cE
Confidence 233 3457778889999999998 999999998885443 2221 234678999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccce--eEEEEcCCCCEEEEEeC-CeEEEEeCCCC-
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI--SDIKFANDGQHLLSRDY-MNLKLWDIRMD- 344 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v--~~v~~s~~~~~l~s~~d-~~i~iwd~~~~- 344 (487)
|++++.+|.|.+||+++..++ +.|.. .+.| +.++.++++.|||+|++ |.|.|||..+-
T Consensus 359 l~~~~~~GeV~v~nl~~~~~~----~rf~D--------------~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSCL----HRFVD--------------DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EEEEcCCceEEEEecCCcceE----EEEee--------------cCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 999999999999999998654 66665 2333 56777899999999998 99999996531
Q ss_pred ----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC--CCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368 345 ----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGVGSAGGITVEAGKNENRK 418 (487)
Q Consensus 345 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 418 (487)
.+++..+..-.. .|+++.|+||++.||.+|. +..+++-.+.+.
T Consensus 421 ~s~~PkPik~~dNLtt---------------~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---------------- 469 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTT---------------AITSLQFNHDAQILAIASRVKKNALRLVHVPSC---------------- 469 (514)
T ss_pred ccCCCCchhhhhhhhe---------------eeeeeeeCcchhhhhhhhhccccceEEEeccce----------------
Confidence 233333322222 3469999999999988875 467888777643
Q ss_pred ceEe--eCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 419 PILQ--AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 419 ~~~~--~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
-.|+ |..+ ..-..|++|+|||.+-+||+|...+ +.+|.
T Consensus 470 TVFsNfP~~n------------------------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 470 TVFSNFPTSN------------------------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred eeeccCCCCC------------------------------CcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 1122 1111 1223789999999999999999665 77774
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=195.88 Aligned_cols=330 Identities=14% Similarity=0.162 Sum_probs=238.6
Q ss_pred ccccc-CcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 28 ELQDV-DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 28 ~~~h~-~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
.+.|. +.|+.++|..||+ .+|+|+..|.+.+||++..+.+ ......|.
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~--------------------------~v~~nah~---- 288 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI--------------------------NVTRNAHY---- 288 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee--------------------------eeeecccc----
Confidence 34454 7999999999995 5677888899999999877653 34445777
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc--eeEe-eecCCCCceeeeeccccccccccccCCCCc
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
+.|....|+ +....+++++.|+.+++|=.+++. ...+ ...++..+..++.|+...+.++.+...+..
T Consensus 289 --------~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 289 --------GSVTGATFL--PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred --------CCcccceec--CCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 889999996 566789999999999999665332 2211 233444555666666555544444432210
Q ss_pred cee-----------------------------------eee--------------------------eeeccceee-eec
Q 011368 183 AHG-----------------------------------YHL--------------------------EWTENMATK-VYP 200 (487)
Q Consensus 183 ~~~-----------------------------------~~~--------------------------~~~~~~~~~-~~~ 200 (487)
... +.. .|+-..... .+.
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 000 000 022111110 111
Q ss_pred ------ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 201 ------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 201 ------~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
......+++++.++.|++.+.| ..|.|-+|+++++ .....+ ..-+.|..+|+.++.+..+ +.+++++
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-i~r~sf----~~~~ah~~~V~gla~D~~n-~~~vsa~ 512 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-IHRKSF----GDSPAHKGEVTGLAVDGTN-RLLVSAG 512 (910)
T ss_pred ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-eeeccc----ccCccccCceeEEEecCCC-ceEEEcc
Confidence 1234678899999999999999 9999999999944 332221 1225899999999999988 9999999
Q ss_pred CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeee
Q 011368 274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 352 (487)
.+|.+.+||...+.+. ..+.. ...+..+.++.....++.+ +|-.|+++|..+ .+.++.+.
T Consensus 513 ~~Gilkfw~f~~k~l~----~~l~l--------------~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~ 573 (910)
T KOG1539|consen 513 ADGILKFWDFKKKVLK----KSLRL--------------GSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-RKVVREFW 573 (910)
T ss_pred CcceEEEEecCCccee----eeecc--------------CCCcceeeeeehhhhhhhhcCceeEEEEEchh-hhhhHHhh
Confidence 9999999999987644 44444 3578888888888788776 559999999998 88999999
Q ss_pred cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccc
Q 011368 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 432 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 432 (487)
+|.+.+ ++++|||||++|++++.|++|++||+.++... -.+ .-..+...+.++| ++.+
T Consensus 574 gh~nri---------------td~~FS~DgrWlisasmD~tIr~wDlpt~~lI-D~~-~vd~~~~sls~SP--ngD~--- 631 (910)
T KOG1539|consen 574 GHGNRI---------------TDMTFSPDGRWLISASMDSTIRTWDLPTGTLI-DGL-LVDSPCTSLSFSP--NGDF--- 631 (910)
T ss_pred ccccce---------------eeeEeCCCCcEEEEeecCCcEEEEeccCccee-eeE-ecCCcceeeEECC--CCCE---
Confidence 999866 69999999999999999999999999998442 222 2345667888888 6666
Q ss_pred cceeeecccce--ecC
Q 011368 433 SNLTRGLYRQA--HEN 446 (487)
Q Consensus 433 ~~l~~g~~~~~--~~w 446 (487)
|++...|.. .+|
T Consensus 632 --LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 632 --LATVHVDQNGIYLW 645 (910)
T ss_pred --EEEEEecCceEEEE
Confidence 899888754 899
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.4e-24 Score=198.13 Aligned_cols=286 Identities=15% Similarity=0.200 Sum_probs=211.7
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
....++|+.+++-..|+.+++. .+.||.+...... .++...++.-..
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------------~~~~~~~k~kqn--------- 85 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------------EKCNHRFKTKQN--------- 85 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------------cceeeecccccc---------
Confidence 3457788889998888888764 6888887654321 111111122110
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---ceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
.--.+..|.|. +-..++|++++..|.|.+||+... +...
T Consensus 86 ~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~------------------------------------- 127 (839)
T KOG0269|consen 86 KFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLT------------------------------------- 127 (839)
T ss_pred eeeehhhcccc-cchhhhheeecCCCcEEEEecCccccchhhh-------------------------------------
Confidence 01456778897 567889999999999999999862 2111
Q ss_pred eeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
.+..|...++++.|++ ...+|++| .||.|++||++...... ++.+....|+.|+|+|..+
T Consensus 128 ----------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~--------t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 128 ----------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS--------TFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred ----------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc--------cccccchhhhceeeccCCC
Confidence 1489999999999987 56788888 99999999999544322 3456778899999999877
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
..|+++.+.|.+++||+|....+. ..+.. |.++|.++.|+|++.+||+|+ |+.|+|||+.. .
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~---~k~~A-------------H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~-~ 252 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCE---KKLTA-------------HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD-S 252 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHH---HHhhc-------------ccCceEEEeecCCCceeeecCCCccEEEEeccC-C
Confidence 999999999999999999876442 34444 689999999999999999986 79999999974 3
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE-EEEEc--CCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
+.......+.. ..+..+.|-|+.++ |++++ .|..|+|||++..-....++..|...++.+++.
T Consensus 253 ~~~~~~tInTi--------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 253 RAKPKHTINTI--------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred CccceeEEeec--------------ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence 32222222221 12258999997665 55554 578999999998877788999999999999997
Q ss_pred eCCccccccccceeeecccce
Q 011368 423 AAPRARRSSLSNLTRGLYRQA 443 (487)
Q Consensus 423 ~~~~~~~~~~~~l~~g~~~~~ 443 (487)
.. +... |.+++.|+.
T Consensus 319 ~~-d~~~-----l~s~sKD~t 333 (839)
T KOG0269|consen 319 SG-DRIN-----LWSCSKDGT 333 (839)
T ss_pred CC-Ccee-----eEeecCccH
Confidence 63 4444 788888876
No 128
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=198.36 Aligned_cols=271 Identities=17% Similarity=0.211 Sum_probs=202.6
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (487)
Q Consensus 118 ~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (487)
.+... .|++++|++|++||.|++|++....-.... .+..
T Consensus 29 ~Lq~d-a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~----------------------------------------~~~a 67 (735)
T KOG0308|consen 29 ALQLD-APNGRYLFTGGRDGIIRLWSVTQDSNEPST----------------------------------------PYIA 67 (735)
T ss_pred hcccc-CCCCceEEecCCCceEEEeccccccCCccc----------------------------------------chhh
Confidence 34444 367888999999999999998754321110 0011
Q ss_pred eecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEEE-ecCCCCEEEEEeC
Q 011368 198 VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF-HPIYCNLLAYSSS 274 (487)
Q Consensus 198 ~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~-~p~~~~~l~~~~~ 274 (487)
.+..|.+.|+++....+++.|+++ .|-+|++|+..... -+. .++..|.+.|.|+++ .++. .++|+|+-
T Consensus 68 -sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~-------stir~H~DYVkcla~~ak~~-~lvaSgGL 138 (735)
T KOG0308|consen 68 -SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM-------STIRTHKDYVKCLAYIAKNN-ELVASGGL 138 (735)
T ss_pred -hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-------hhhhcccchheeeeecccCc-eeEEecCC
Confidence 137899999999999999999999 99999999998554 233 246789999999999 6776 89999999
Q ss_pred CCeEEEEEccCCccccccceeecccccccCcccccc-ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeee
Q 011368 275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~ 352 (487)
|+.|.+||+.++.. ..+..++. .....+. ++..+|.+++.++.|..+++|+ .+.+++||.++ .+.+..++
T Consensus 139 D~~IflWDin~~~~--~l~~s~n~-----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~kimkLr 210 (735)
T KOG0308|consen 139 DRKIFLWDINTGTA--TLVASFNN-----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKKIMKLR 210 (735)
T ss_pred CccEEEEEccCcch--hhhhhccc-----cccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccceeeee
Confidence 99999999998732 00122221 1111122 6788999999999998888876 49999999998 88888889
Q ss_pred cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccc
Q 011368 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 432 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 432 (487)
+|...+ ..+-.++||..++++|.||+|++||+..+ .++.++..|.+.|+++..+| +...
T Consensus 211 GHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~--sf~~--- 269 (735)
T KOG0308|consen 211 GHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSP--SFTH--- 269 (735)
T ss_pred ccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCC--Ccce---
Confidence 999865 68999999999999999999999999876 66889999999999999887 3444
Q ss_pred cceeeecccce-ecCCCC--CccccccccCCCeEEEEEcC
Q 011368 433 SNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHP 469 (487)
Q Consensus 433 ~~l~~g~~~~~-~~w~~~--~~~~~~~~~~~~v~~~~~sp 469 (487)
+-+|++|+. ..=... ........-+.+|.++..+-
T Consensus 270 --vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~ 307 (735)
T KOG0308|consen 270 --VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE 307 (735)
T ss_pred --EEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc
Confidence 788888887 333222 11122224445555555553
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.4e-23 Score=171.85 Aligned_cols=211 Identities=14% Similarity=0.174 Sum_probs=157.7
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-ceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
+.|.+|+|+| ....++++++.|++||+|+++.. .....
T Consensus 28 DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~k---------------------------------------- 66 (347)
T KOG0647|consen 28 DSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPK---------------------------------------- 66 (347)
T ss_pred cchheeEecc-ccCceEEecccCCceEEEEEecCCcccch----------------------------------------
Confidence 8899999976 35567778999999999999873 32211
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC-CCEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLA 270 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~ 270 (487)
....|.++|.+++|+.||..+++| .|+.+++||+.++ +.. .+..|..+|.++.|-+.. ...|+
T Consensus 67 ------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~--------~v~~Hd~pvkt~~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 67 ------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVS--------QVAAHDAPVKTCHWVPGMNYQCLV 131 (347)
T ss_pred ------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Cee--------eeeecccceeEEEEecCCCcceeE
Confidence 136899999999999999999999 9999999999965 433 346899999999998765 14899
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 349 (487)
+||.|.+|+.||.++...+ ..+.. ...+.++..-. .+++.+ .+..|.+|+++.+....+
T Consensus 132 TGSWDKTlKfWD~R~~~pv----~t~~L--------------PeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k 191 (347)
T KOG0647|consen 132 TGSWDKTLKFWDTRSSNPV----ATLQL--------------PERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFK 191 (347)
T ss_pred ecccccceeecccCCCCee----eeeec--------------cceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhh
Confidence 9999999999999987644 44444 34566665542 355554 569999999975333333
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC-CceeEEEeccCC
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-SAGGITVEAGKN 414 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~ 414 (487)
.+...-.. .+++++..+|....+.|+-.|.+.|..+..+ .....++++|+.
T Consensus 192 ~~~SpLk~--------------Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 192 RIESPLKW--------------QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred hhcCcccc--------------eeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 33222211 2268888888888899999999999999874 234668888875
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.8e-23 Score=169.83 Aligned_cols=271 Identities=12% Similarity=0.200 Sum_probs=191.1
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+-|.|+.|.+.|+++|+|+.|++|+|||.+... .....-...+.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-----------------------~~W~~Ts~Wrah~------- 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-----------------------GTWSCTSSWRAHD------- 59 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-----------------------CceEEeeeEEecC-------
Confidence 3578899999999999999999999999999975443 2667778899999
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
+.|..|.|.+..=|+.+|+++.|+++.||.-.......- ..
T Consensus 60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~----------------------------------~~ 100 (361)
T KOG2445|consen 60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH----------------------------------GR 100 (361)
T ss_pred -----CcEEEEEecCccccceEEEEecCCceeeeeecccccccc----------------------------------cc
Confidence 999999998655689999999999999997542211100 00
Q ss_pred eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCcee--EEe---ecCCCCCCCCCCcEEEEE
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCF--NIV---DMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~--~~~---~~~~~~~~~~~~~v~~v~ 260 (487)
.| ..+..+....+.|+++.|.|. |-.+|++ .||.++||+.-...... .+. ..-+.....+.....|+.
T Consensus 101 ~W----v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 101 RW----VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred ee----EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 01 122224667888999999984 7788998 99999999876433211 000 000012224556678999
Q ss_pred EecCC--CCEEEEEeCC-----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC----CEEE
Q 011368 261 FHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG----QHLL 329 (487)
Q Consensus 261 ~~p~~--~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~ 329 (487)
|+|.. +.+||+|+.+ +.+.||........... ...+.+|..+|++++|.|+- ..||
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k-------------va~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK-------------VAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeee-------------ehhcCCCCCcceeeeeccccCCceeeEE
Confidence 99742 3688888876 57888876654311111 11234678999999999972 3566
Q ss_pred EEe-CCeEEEEeCCCCC-------------------ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368 330 SRD-YMNLKLWDIRMDS-------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 389 (487)
Q Consensus 330 s~~-d~~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~ 389 (487)
+++ || |+||.++... +.+..+..|+.. |+.+.|+-.|..|++.|
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~---------------VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE---------------VWRVRWNMTGTILSSTG 307 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc---------------eEEEEEeeeeeEEeecC
Confidence 665 57 9999987311 112233444443 37999999999999999
Q ss_pred CCCcEEEEEeCC
Q 011368 390 YSNLLRIFSHGV 401 (487)
Q Consensus 390 ~dg~i~iwd~~~ 401 (487)
.||.|++|...-
T Consensus 308 dDG~VRLWkany 319 (361)
T KOG2445|consen 308 DDGCVRLWKANY 319 (361)
T ss_pred CCceeeehhhhh
Confidence 999999998764
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=177.44 Aligned_cols=223 Identities=18% Similarity=0.221 Sum_probs=166.3
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
+.++.++-.+..+..+.++-+..|.|+||++..... .+..... . ......
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~-~l~~~~~----------------~-------------~~~s~~ 201 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN-ALSEPGL----------------E-------------VKDSEF 201 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhh-hhcCccc----------------c-------------cccccc
Confidence 777777776545666777778999999999864311 0000000 0 000112
Q ss_pred ceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
+++.++ .+|...=+.++|||- ...+++| .-+.|++|...++.-.+. +..+.+|...|..++|+|.....|++
T Consensus 202 ~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-----~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 202 RPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-----QRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred CceEEe-cccCccceeeecccccccccccCccccceEeeeeccCceeec-----CccccccccchhhhccCCccCceEEe
Confidence 233333 789999999999993 3357888 888999999986443322 34677899999999999988789999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC--CCcee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTPV 348 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~--~~~~~ 348 (487)
|+-||+|+|||+|.+.... ....+. |.+.|+.|.|+.+-.+|++|+| |+++|||++. .+.++
T Consensus 276 cS~DgsIrIWDiRs~~~~~--~~~~kA-------------h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKA--AVSTKA-------------HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred eecCceEEEEEecCCCccc--eeEeec-------------cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc
Confidence 9999999999999974211 012233 5789999999998889999976 9999999985 35788
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCC
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
..++.|..++ +++.|+| +...|++++.|..|.|||+...
T Consensus 341 A~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 341 ATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999876 6999999 4667889999999999999854
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=189.29 Aligned_cols=304 Identities=18% Similarity=0.208 Sum_probs=216.1
Q ss_pred EEEEEcC---CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 36 SAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 36 ~~~~~s~---~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
.+..|++ ....||.+..||.|.++|.....- .++.+.+..+.+|.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------r~ee~~lk~~~aH~----------- 100 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------RLEERQLKKPLAHK----------- 100 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc---------------------chhhhhhccccccc-----------
Confidence 3466765 336789999999999999764421 11223345677788
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
+.|..+.|. |....|++++.|.++++||+.++++....
T Consensus 101 -nAifDl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~~--------------------------------------- 138 (720)
T KOG0321|consen 101 -NAIFDLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGGR--------------------------------------- 138 (720)
T ss_pred -ceeEeeccC--CCceeEEEccCCceeeeeeeccceeecce---------------------------------------
Confidence 999999995 56678999999999999999988765431
Q ss_pred cceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCce------eEEe---ec-----C-----CCCCCC
Q 011368 193 NMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC------FNIV---DM-----K-----PSNMDD 251 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~------~~~~---~~-----~-----~~~~~~ 251 (487)
.+.+|...|.+++|.|. ...|++| .||.|.|||++..... ..+. .. + .+....
T Consensus 139 ------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 139 ------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 13799999999999995 4567778 9999999999854310 0000 00 0 012234
Q ss_pred CCCcEEE---EEEecCCCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCcccccccc---ccceeEEEEcCC
Q 011368 252 LTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI---IASISDIKFAND 324 (487)
Q Consensus 252 ~~~~v~~---v~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~---~~~v~~v~~s~~ 324 (487)
+...|.+ +.+..|. ..||+++. |+.|++||++...... .. .+.....+.-| .-.+.++.....
T Consensus 213 ~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~------r~---ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAY------RQ---EPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred ccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccccc------cc---CCCcccCccCcccceeeeEEEEecCC
Confidence 4555555 5566676 88999888 9999999999865321 11 01111111112 345677777777
Q ss_pred CCEEEE-EeCCeEEEEeCCCCC-ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 325 GQHLLS-RDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 325 ~~~l~s-~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
|.+|++ |.|+.|++|++.... .++..+.++... .++ ..-..+||+.+|++|+.|...++|.+.+.
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~-----------sf~--vks~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS-----------SFY--VKSELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhccCcccc-----------eee--eeeecCCCCceEeccCCCcceeeeeecCc
Confidence 777764 689999999997632 345555554432 111 35567899999999999999999999999
Q ss_pred CceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368 403 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 403 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
+.....+.+|.-.|..+.+.|..... +++++.|-. ++|.+
T Consensus 350 e~~~~~l~Ght~eVt~V~w~pS~~t~------v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 350 EAPPALLLGHTREVTTVRWLPSATTP------VATCSDDFRVKIWRL 390 (720)
T ss_pred cCChhhhhCcceEEEEEeeccccCCC------ceeeccCcceEEEec
Confidence 88889999999999999999986666 577788888 99944
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.6e-22 Score=167.22 Aligned_cols=305 Identities=13% Similarity=0.165 Sum_probs=202.4
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
+.|+++..-+ ..|+++++|+.||.|.+||++.........+-... ++
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~-~c------------------------------- 90 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH-KC------------------------------- 90 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceehe-ee-------------------------------
Confidence 8899999975 67899999999999999999864321110000000 00
Q ss_pred ceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC--CEE
Q 011368 194 MATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLL 269 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l 269 (487)
...+....+|...|..+.|-| |.-++.++ .|.++++||.++.+.... + ...+.|++-+++|-.. -++
T Consensus 91 ~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~-F--------~me~~VYshamSp~a~sHcLi 161 (397)
T KOG4283|consen 91 IVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD-F--------KMEGKVYSHAMSPMAMSHCLI 161 (397)
T ss_pred eccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE-e--------ecCceeehhhcChhhhcceEE
Confidence 001111268999999999988 55566677 999999999996544332 1 2335577777777431 478
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEEEeCCCCCce
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~iwd~~~~~~~ 347 (487)
|+|..+-.|++.|+.+|... +++.+ |...|.++.|+|..+++++ |+ ||.|++||++....+
T Consensus 162 A~gtr~~~VrLCDi~SGs~s----H~LsG-------------Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc 224 (397)
T KOG4283|consen 162 AAGTRDVQVRLCDIASGSFS----HTLSG-------------HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC 224 (397)
T ss_pred EEecCCCcEEEEeccCCcce----eeecc-------------ccCceEEEEeccCceeEEEecCCCceEEEEEeecccce
Confidence 88888999999999998755 66666 5899999999999998764 54 799999999976678
Q ss_pred eeeeeccccccccccc--ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe--ccCCccccceEee
Q 011368 348 VATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQA 423 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~ 423 (487)
...+..|+...+.... .-+.+. +.+++|+.|+.++++.+.|..+++|+..+|+.....+. .|... ...++.-
T Consensus 225 f~~lD~hn~k~~p~~~~n~ah~gk---vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~ 300 (397)
T KOG4283|consen 225 FRVLDQHNTKRPPILKTNTAHYGK---VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHI 300 (397)
T ss_pred eEEeecccCccCccccccccccce---eeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-ccceEEE
Confidence 8888888754333222 112222 36999999999999999999999999998865433221 11111 1111110
Q ss_pred CCccccccccceeee-cccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecC-CeEEEEe
Q 011368 424 APRARRSSLSNLTRG-LYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY 486 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g-~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~~ 486 (487)
. .+ ....+++ -.++. .+. -.+..+.....|-+.|.+.++.|+-+.+.++.- .+++.|.
T Consensus 301 ~-~~----~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 301 Q-SM----DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred e-ec----ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 0 00 0001111 11122 333 222334445567889999999999999999884 4588875
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=173.59 Aligned_cols=228 Identities=16% Similarity=0.236 Sum_probs=169.0
Q ss_pred ccccccCcEEEEEEcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 27 EELQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
+.+.|.+.++-+.-++-+ .+.|+=+..|.|.||++...- +-++.++. .......+++.++.+|.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l---------~~l~~~~~--~~~~s~~~Pl~t~~ghk--- 211 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL---------NALSEPGL--EVKDSEFRPLFTFNGHK--- 211 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhh---------hhhcCccc--cccccccCceEEecccC---
Confidence 456677888888877765 455566689999999976431 11221111 11224667788999998
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..=..++|+|...| .|++|..-+.|++|...++....-.
T Consensus 212 ---------~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~------------------------------- 250 (440)
T KOG0302|consen 212 ---------GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQ------------------------------- 250 (440)
T ss_pred ---------ccceeeeccccccc-ccccCccccceEeeeeccCceeecC-------------------------------
Confidence 66799999875444 5788888889999999987754321
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
..+.+|...|..++|||. ...|++| .|++|+|||++...+...+ ..+.|.+.|+-+.|+
T Consensus 251 -------------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~------~~kAh~sDVNVISWn 311 (440)
T KOG0302|consen 251 -------------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV------STKAHNSDVNVISWN 311 (440)
T ss_pred -------------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee------EeeccCCceeeEEcc
Confidence 013679999999999995 5678888 9999999999965433322 237899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC--EEEEEeCCeEEEEe
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWD 340 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~d~~i~iwd 340 (487)
..- .+||+|+.||+++|||+|+-+.- +.+..|+- |..+|+++.|+|... ++++|+|.+|.+||
T Consensus 312 r~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~-------------Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 312 RRE-PLLASGGDDGTLSIWDLRQFKSG-QPVATFKY-------------HKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred CCc-ceeeecCCCceEEEEEhhhccCC-CcceeEEe-------------ccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 998 69999999999999999985422 33344444 689999999998644 44456789999999
Q ss_pred CCC
Q 011368 341 IRM 343 (487)
Q Consensus 341 ~~~ 343 (487)
+..
T Consensus 377 lsv 379 (440)
T KOG0302|consen 377 LSV 379 (440)
T ss_pred eec
Confidence 975
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=5.5e-21 Score=175.37 Aligned_cols=233 Identities=9% Similarity=0.116 Sum_probs=158.2
Q ss_pred CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (487)
Q Consensus 44 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~ 123 (487)
++.+++++.|+.|++||..+++. ...+..+. .+..++|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------------~~~~~~~~-------------~~~~l~~-- 38 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV---------------------------TRTFPVGQ-------------RPRGITL-- 38 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce---------------------------EEEEECCC-------------CCCceEE--
Confidence 35788999999999999877653 34555443 3677999
Q ss_pred cCCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeeccc
Q 011368 124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHA 202 (487)
Q Consensus 124 ~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (487)
+++++.+ ++++.++.|++||..+++.... +..
T Consensus 39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-----------------------------------------------~~~ 71 (300)
T TIGR03866 39 SKDGKLLYVCASDSDTIQVIDLATGEVIGT-----------------------------------------------LPS 71 (300)
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCcEEEe-----------------------------------------------ccC
Confidence 5788766 5667889999999988765432 122
Q ss_pred CCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-eEE
Q 011368 203 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVR 279 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-~i~ 279 (487)
+ ..+..++|+|+++.++++ .++.|++||+.+. ..+..+ . +...+.+++|+|++ .++++++.++ .+.
T Consensus 72 ~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~-------~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 72 G-PDPELFALHPNGKILYIANEDDNLVTVIDIETR-KVLAEI-------P-VGVEPEGMAVSPDG-KIVVNTSETTNMAH 140 (300)
T ss_pred C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEe-------e-CCCCcceEEECCCC-CEEEEEecCCCeEE
Confidence 2 224678899999977654 6899999999853 333322 1 22346789999999 8888888765 567
Q ss_pred EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e-CCeEEEEeCCCCCceeeeeeccccc
Q 011368 280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRMDSTPVATFKIHEHL 357 (487)
Q Consensus 280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~ 357 (487)
+||.++++.. ..... ......++|+|+|++|+++ . ++.|++||+++ ++.+..+..+...
T Consensus 141 ~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~ 201 (300)
T TIGR03866 141 FIDTKTYEIV----DNVLV--------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPG 201 (300)
T ss_pred EEeCCCCeEE----EEEEc--------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccc
Confidence 7898876532 11111 1245678999999988654 3 59999999987 6665555432111
Q ss_pred ccccccccCCCCcceeeEEEEcCCCCEEEE-EcCCCcEEEEEeCCCC
Q 011368 358 RPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGS 403 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-g~~dg~i~iwd~~~~~ 403 (487)
... ... ....++|+|+++++++ .+.++.+.+||+++++
T Consensus 202 ~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 202 VHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred ccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 000 000 1136889999998654 4556789999998763
No 136
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.5e-22 Score=166.41 Aligned_cols=267 Identities=18% Similarity=0.259 Sum_probs=178.4
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
+..+++|. +.|++++| +.||++|++++.|++|++|++++-....-
T Consensus 79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------------------- 123 (420)
T KOG2096|consen 79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEH--------------------- 123 (420)
T ss_pred hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhh---------------------
Confidence 46789999 88999999 68999999999999999999987432110
Q ss_pred ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCC---ceeEEeecCCCC
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD---QCFNIVDMKPSN 248 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~---~~~~~~~~~~~~ 248 (487)
++.+. .-.-+.-+.+.|.||-+-++.+ ...++++|.+.... .....+......
T Consensus 124 --------------------r~~R~--nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~ 181 (420)
T KOG2096|consen 124 --------------------RCIRQ--NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLE 181 (420)
T ss_pred --------------------hHhhc--cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccc
Confidence 11111 1111245778999997766664 78899999876322 111111111011
Q ss_pred C-CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368 249 M-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 327 (487)
Q Consensus 249 ~-~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 327 (487)
+ +.|.-.+-.+-..-.+ .+|++++.|..|.||+++ |+.+ ..+.. ....-...+.||+|++
T Consensus 182 f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idt-------------nq~~n~~aavSP~GRF 242 (420)
T KOG2096|consen 182 FERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDT-------------NQSSNYDAAVSPDGRF 242 (420)
T ss_pred cchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeecc-------------ccccccceeeCCCCcE
Confidence 1 2345556666666666 999999999999999999 5443 33322 1234567889999999
Q ss_pred EEEEeC-CeEEEEeCCCC--C-----ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 328 LLSRDY-MNLKLWDIRMD--S-----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 328 l~s~~d-~~i~iwd~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
++++.- -.|++|.+-.. + ..+..+++|...+ +.++||++.+.+++.+.||+++|||.
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------------~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------------LAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---------------eeeeeCCCcceeEEEecCCcEEEeec
Confidence 999875 88999987431 1 2456778888755 69999999999999999999999998
Q ss_pred CCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368 400 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 479 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~ 479 (487)
+-..+ .. .|.++ |-.|+.- ..-.-..++ .++.+|.|+.||.+..
T Consensus 308 dVrY~------~~------------qDpk~-----Lk~g~~p------------l~aag~~p~-RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 308 DVRYE------AG------------QDPKI-----LKEGSAP------------LHAAGSEPV-RLELSPSGDSLAVSFG 351 (420)
T ss_pred cceEe------cC------------CCchH-----hhcCCcc------------hhhcCCCce-EEEeCCCCcEEEeecC
Confidence 63211 11 11111 1111000 000011234 7899999999999988
Q ss_pred CeEEEEeC
Q 011368 480 NSLFFHYA 487 (487)
Q Consensus 480 ~~~~i~~~ 487 (487)
..+.+|.+
T Consensus 352 s~l~~~~s 359 (420)
T KOG2096|consen 352 SDLKVFAS 359 (420)
T ss_pred CceEEEEc
Confidence 88888763
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-21 Score=163.46 Aligned_cols=277 Identities=14% Similarity=0.127 Sum_probs=181.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
+-|+++.| ..-|+++++|+.|++++|||.....-...
T Consensus 14 DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W~----------------------------------------- 50 (361)
T KOG2445|consen 14 DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTWS----------------------------------------- 50 (361)
T ss_pred ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCceE-----------------------------------------
Confidence 77999999 57799999999999999999754332111
Q ss_pred ceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCC-----CceeEEeecCCCCCCCCCCcEEEEEEecC-
Q 011368 194 MATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPI- 264 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~v~~~p~- 264 (487)
+... ...|.+.|..+.|.+ -|+.+|+| .|+++.||.-... +..... ..++......|+.+.|.|.
T Consensus 51 -~Ts~-Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~----~ttl~DsrssV~DV~FaP~h 124 (361)
T KOG2445|consen 51 -CTSS-WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR----RTTLVDSRSSVTDVKFAPKH 124 (361)
T ss_pred -Eeee-EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE----EEEeecCCcceeEEEecchh
Confidence 1111 278999999999954 39999999 9999999976311 111111 1235566778999999985
Q ss_pred -CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---CCEEEEEeC------C
Q 011368 265 -YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSRDY------M 334 (487)
Q Consensus 265 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~s~~d------~ 334 (487)
| -.||+++.||.+|||+.-....+ ..+....+-.........+.....|+.|+|. ..+|+.|++ +
T Consensus 125 lG-LklA~~~aDG~lRIYEA~dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~ 199 (361)
T KOG2445|consen 125 LG-LKLAAASADGILRIYEAPDPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLN 199 (361)
T ss_pred cc-eEEEEeccCcEEEEEecCCcccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcccc
Confidence 5 78999999999999987664322 2222211111111222345678899999974 457888865 4
Q ss_pred eEEEEeCCCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCC----CCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368 335 NLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGSYSNLLRIFSHGVGSAGGI 407 (487)
Q Consensus 335 ~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----~~~l~sg~~dg~i~iwd~~~~~~~~~ 407 (487)
.++||.....+ ..+..+..|..++ ++++|.|+ -..||+++.|| |+||++......+
T Consensus 200 ~~~Iye~~e~~rKw~kva~L~d~~dpI---------------~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i- 262 (361)
T KOG2445|consen 200 KVKIYEYNENGRKWLKVAELPDHTDPI---------------RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI- 262 (361)
T ss_pred ceEEEEecCCcceeeeehhcCCCCCcc---------------eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh-
Confidence 89999876533 2344556666655 69999995 35799999999 9999998532111
Q ss_pred EEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
.-+.-.. |..-+.+ .-+.+..+-+|...|..+.|+-.|..|+++++|| +.+|.
T Consensus 263 ~~ee~~~--------~~~~~~l------------------~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 263 EEEEVLA--------PDLMTDL------------------PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred hhhcccC--------CCCcccc------------------ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 0000000 0000000 0012233446777888888888888888777665 77775
Q ss_pred C
Q 011368 487 A 487 (487)
Q Consensus 487 ~ 487 (487)
+
T Consensus 317 a 317 (361)
T KOG2445|consen 317 A 317 (361)
T ss_pred h
Confidence 3
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.2e-22 Score=165.05 Aligned_cols=243 Identities=18% Similarity=0.204 Sum_probs=186.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
.+.|..++.+++|.++ ..+++|+.||.|+.+|+.+++. ..+..|.
T Consensus 50 ~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~----------------------------~~igth~------ 94 (323)
T KOG1036|consen 50 KFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE----------------------------DQIGTHD------ 94 (323)
T ss_pred heecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc----------------------------eeeccCC------
Confidence 5668999999999974 5689999999999999998864 4567787
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
++|.+|.++ +....+++|+.|++|++||.+.......
T Consensus 95 ------~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~----------------------------------- 131 (323)
T KOG1036|consen 95 ------EGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGT----------------------------------- 131 (323)
T ss_pred ------CceEEEEee--ccCCeEEEcccCccEEEEeccccccccc-----------------------------------
Confidence 999999996 4566899999999999999986332211
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
......|.++..+ ++.|+.| .|..|.+||+++.....+. .-....-.++|+++.|++
T Consensus 132 -------------~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~------reS~lkyqtR~v~~~pn~- 189 (323)
T KOG1036|consen 132 -------------FDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR------RESSLKYQTRCVALVPNG- 189 (323)
T ss_pred -------------cccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh------ccccceeEEEEEEEecCC-
Confidence 2334478888876 6788887 9999999999976654421 112334568999999977
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~ 345 (487)
.-+++++-||.|.+=.++...........|+.|........ .-.+|++|+|+|-...+++| +||.|.+||+.. .
T Consensus 190 eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~----~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~-r 264 (323)
T KOG1036|consen 190 EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE----IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN-R 264 (323)
T ss_pred CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce----EEEEeceeEeccccceEEecCCCceEEEccCcc-h
Confidence 77999999999998777776444444567888743332221 23589999999998899997 579999999986 7
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 390 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~ 390 (487)
+.+..+..-+..+ -+++|+.||..||+++.
T Consensus 265 Krl~q~~~~~~SI---------------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 265 KRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence 7777776554422 48999999999998875
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.7e-24 Score=197.99 Aligned_cols=198 Identities=17% Similarity=0.300 Sum_probs=168.7
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+.++.. -..++.+++|+.|..+-+|.+..-.....
T Consensus 29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S----------------------------------------- 65 (825)
T KOG0267|consen 29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPNAITS----------------------------------------- 65 (825)
T ss_pred hhhceeee--eccceeeccCCCceeeccccccCCchhhe-----------------------------------------
Confidence 67777776 35678899999999999998865432211
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+.+|..+|.++.|+++..+|++| .+|+|++||++ ..+.+ +++.+|...+.+|.|+|-+ .+.+.+
T Consensus 66 ------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~v-------rtLtgh~~~~~sv~f~P~~-~~~a~g 130 (825)
T KOG0267|consen 66 ------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIV-------RTLTGHLLNITSVDFHPYG-EFFASG 130 (825)
T ss_pred ------eeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhh-------hhhhccccCcceeeeccce-EEeccc
Confidence 38999999999999999999999 99999999999 44444 3578999999999999999 899999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~ 351 (487)
+.|+.+.+||.+...+. ..+.+ |...+..+.|+|+|+++++|.+ ..++|||+.. ++....|
T Consensus 131 Stdtd~~iwD~Rk~Gc~----~~~~s-------------~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef 192 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCS----HTYKS-------------HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEF 192 (825)
T ss_pred cccccceehhhhccCce----eeecC-------------CcceeEEEeecCCCceeeccCCcceeeeecccc-ccccccc
Confidence 99999999999965543 55555 4778999999999999999865 9999999986 8999999
Q ss_pred ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+.|...+ ..+.|+|..-++++|+.|+++++||+++-
T Consensus 193 ~~~e~~v---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 193 KSHEGKV---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ccccccc---------------cccccCchhhhhccCCCCceeeeecccee
Confidence 9998765 47889999999999999999999999865
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=5.8e-22 Score=166.42 Aligned_cols=285 Identities=14% Similarity=0.180 Sum_probs=194.7
Q ss_pred cccCcEEEEEEcC-----CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 30 QDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 30 ~h~~~V~~~~~s~-----~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
.|..+|..++|++ +-+.+|+.+. +.+.||+....-- .+.+..+....
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------------ir~lq~y~D~d--- 87 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------------IRLLQSYADED--- 87 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------------eeeeeeccCCC---
Confidence 3778999999995 2256777765 4789998764321 11122222211
Q ss_pred ccccccccccceeEEEEEecCC--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 105 DYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
.++....++|+.... ..++|.++.-|.|+|.|+..++...-
T Consensus 88 -------~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~------------------------------ 130 (385)
T KOG1034|consen 88 -------HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN------------------------------ 130 (385)
T ss_pred -------CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc------------------------------
Confidence 127788889975333 45788889999999999998875543
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
+.+|...|+.+.+.|+ .++++++ .|.+|++|+++ ...++.++ .-+++|.+.|.++.
T Consensus 131 -----------------~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf----GG~egHrdeVLSvD 188 (385)
T KOG1034|consen 131 -----------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF----GGVEGHRDEVLSVD 188 (385)
T ss_pred -----------------eeccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe----cccccccCcEEEEE
Confidence 3799999999999996 4677888 99999999999 56677665 34689999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCcccccccee--eccc-ccccC--ccc------cccccccceeEEEEcCCCCEEE
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI--LRDA-AESHG--SKS------FFTEIIASISDIKFANDGQHLL 329 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~h-~~~~~--~~~------~~~~~~~~v~~v~~s~~~~~l~ 329 (487)
|+++| ..|++++.|..|++|++...+........ +... ...|. +.. .-..|...|.|+.|- |++++
T Consensus 189 ~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~il 265 (385)
T KOG1034|consen 189 FSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFIL 265 (385)
T ss_pred EcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhee
Confidence 99999 99999999999999999965432111111 1110 00000 001 123578888888887 57888
Q ss_pred EEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 330 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 330 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
+-+ ++.|..|......+.+...+..+...+.+..+.-..+-.+....+|.|-+++||.|...|.|++||+++.+.
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 854 589999987222333333333333333333333333333345677788899999999999999999997744
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.3e-24 Score=196.69 Aligned_cols=235 Identities=17% Similarity=0.295 Sum_probs=196.0
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...|.|+..-..++.+++|+.|..+-+|.+..... +..|.+|+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~---------------------------i~S~~~he------ 70 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA---------------------------ITSLTGHE------ 70 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch---------------------------hheeeccC------
Confidence 346889999999977889999999999999999765433 46689999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.+|.+|.| .++..+|++|+.+|+|++||++..+....
T Consensus 71 ------spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vrt----------------------------------- 107 (825)
T KOG0267|consen 71 ------SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVRT----------------------------------- 107 (825)
T ss_pred ------Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhhh-----------------------------------
Confidence 99999999 46778899999999999999998764433
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.+|...+..+.|+|-+.++++| .|..+++||++..+ |.. .+.+|...+.++.|+|+|
T Consensus 108 ------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~-------~~~s~~~vv~~l~lsP~G- 166 (825)
T KOG0267|consen 108 ------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSH-------TYKSHTRVVDVLRLSPDG- 166 (825)
T ss_pred ------------hhccccCcceeeeccceEEeccccccccceehhhhccC-cee-------eecCCcceeEEEeecCCC-
Confidence 48999999999999999999999 99999999999554 433 356799999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.+++.+++|..++|||+..|++. ..|+. |++.+..+.|+|..-++++|+ |+++++||+++ .
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~----~ef~~-------------~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet-f 228 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLS----KEFKS-------------HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET-F 228 (825)
T ss_pred ceeeccCCcceeeeecccccccc----ccccc-------------ccccccccccCchhhhhccCCCCceeeeeccce-e
Confidence 99999999999999999998876 66776 478999999999888888875 69999999986 5
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
..+........ +|.+..|+|+++.+++|....
T Consensus 229 e~I~s~~~~~~---------------~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 229 EVISSGKPETD---------------GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EEeeccCCccC---------------CceeeeecCCceeeecCchhh
Confidence 54544443322 236999999999888887653
No 142
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=1.5e-21 Score=168.58 Aligned_cols=333 Identities=15% Similarity=0.232 Sum_probs=209.5
Q ss_pred cCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
..+|..+.|.++.. .||||+.|..|+||.+...+.. ...+..+++..+..|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------------------~~~~~V~y~s~Ls~H~--------- 65 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------------------GGDMKVEYLSSLSRHT--------- 65 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC------------------CCceeEEEeecccCCc---------
Confidence 45799999999876 9999999999999999876542 1113667888999999
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
.+|++++| +|+|++|++|+.+|.|.+|....-... .... ........|
T Consensus 66 ---~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~-~~d~--------------------------e~~~~ke~w 113 (434)
T KOG1009|consen 66 ---RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF-DADT--------------------------EADLNKEKW 113 (434)
T ss_pred ---ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc-cccc--------------------------hhhhCccce
Confidence 99999999 689999999999999999987641110 0000 000000011
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
.++..+.+|...|+.++|+|++++++++ .|..+++||+.. ++...+ +.+|...+..++|.|.+ +++
T Consensus 114 ----~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~-------~~dh~~yvqgvawDpl~-qyv 180 (434)
T KOG1009|consen 114 ----VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAI-------LDDHEHYVQGVAWDPLN-QYV 180 (434)
T ss_pred ----EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEee-------ccccccccceeecchhh-hhh
Confidence 1222347899999999999999999999 999999999994 444443 57899999999999999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccce-eecccccccC--cccccc---ccccceeEEEEcCCCCEEEEEe-----C-----
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHG--SKSFFT---EIIASISDIKFANDGQHLLSRD-----Y----- 333 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~h~~~~~--~~~~~~---~~~~~v~~v~~s~~~~~l~s~~-----d----- 333 (487)
++-+.|...+.+.+...+....... .+........ ....+. ....-...++|+|||.+|++.+ .
T Consensus 181 ~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~ 260 (434)
T KOG1009|consen 181 ASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFR 260 (434)
T ss_pred hhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceee
Confidence 9999999888887776544322110 1111000000 000000 0123456789999999998632 1
Q ss_pred CeEEEEeCCCCCceeeeeeccccccc--ccccccCCCCcceeeEEEEc-CCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRP--KLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAGGITVE 410 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s-~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 410 (487)
+..++|+-....++...+........ ..++.+-.-.-......-|+ |-+-.+|.++.+ .++|||.++-......
T Consensus 261 n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v-- 337 (434)
T KOG1009|consen 261 NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVV-- 337 (434)
T ss_pred ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEE--
Confidence 23456655444555655554443221 00000000000000000111 223345555554 7899997765321111
Q ss_pred ccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEE
Q 011368 411 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483 (487)
Q Consensus 411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~ 483 (487)
..-|-..|++++|++||..|++.|.|+..
T Consensus 338 --------------------------------------------~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 338 --------------------------------------------DNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred --------------------------------------------eeeeeeeecceeecCCCcEEEEeccCCce
Confidence 11234478899999999999988877743
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.3e-20 Score=173.00 Aligned_cols=262 Identities=13% Similarity=0.137 Sum_probs=174.0
Q ss_pred cCcEEEEEEcCCCCEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
...+.+++|+|+++.+ ++++.++.|++||..+++. ...+..+.
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~--------- 73 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---------------------------IGTLPSGP--------- 73 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---------------------------EEeccCCC---------
Confidence 3457789999999876 5667889999999887653 23333332
Q ss_pred ccccceeEEEEEecCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.+..++| +++++.++++ +.|+.+++||+.+++....
T Consensus 74 ----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~------------------------------------- 110 (300)
T TIGR03866 74 ----DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAE------------------------------------- 110 (300)
T ss_pred ----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeE-------------------------------------
Confidence 2456788 5778776554 5689999999987654332
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCC-eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
..+...+.+++|+|++++++++ .++ .+.+||.++. .....+ .....+.+++|+|++ .
T Consensus 111 -----------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-~~~~~~--------~~~~~~~~~~~s~dg-~ 169 (300)
T TIGR03866 111 -----------IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-EIVDNV--------LVDQRPRFAEFTADG-K 169 (300)
T ss_pred -----------eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-eEEEEE--------EcCCCccEEEECCCC-C
Confidence 1122346789999999999998 554 5777898743 332221 112235678999999 7
Q ss_pred EEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE--eCCeEEEEeCCCC
Q 011368 268 LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKLWDIRMD 344 (487)
Q Consensus 268 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~--~d~~i~iwd~~~~ 344 (487)
.++++ ..++.|++||+++++.. ..+..+.... . . .......++|+|++++++.+ .++.+.+||+++
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~-~----~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~- 238 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV-H----P-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT- 238 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceee----eeeeeccccc-c----c-ccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-
Confidence 77544 46899999999987643 2222110000 0 0 01124568899999986553 357899999986
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
++.+..+..... + ++++|+|+|++|+++ +.+|.|++||+.++ ..+..++....+ +.++++
T Consensus 239 ~~~~~~~~~~~~-~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~-~~~~~~ 299 (300)
T TIGR03866 239 YEVLDYLLVGQR-V---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKSIKVGRLP-WGVVVR 299 (300)
T ss_pred CcEEEEEEeCCC-c---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEEccccc-ceeEeC
Confidence 665554432221 1 589999999999886 46899999999987 445555554443 555554
No 144
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.5e-21 Score=179.30 Aligned_cols=230 Identities=16% Similarity=0.282 Sum_probs=181.7
Q ss_pred ccCcEEE-EEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 31 DVDIVSA-IEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 31 h~~~V~~-~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
|.+-|.+ +++-+ ++-.|++|+.|+.|.+|...+... +.+|++|+
T Consensus 56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P---------------------------~~~LkgH~------- 101 (745)
T KOG0301|consen 56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP---------------------------LYTLKGHK------- 101 (745)
T ss_pred CcceeeccceeccccCcceEeecccceEEEEecCCCCc---------------------------hhhhhccc-------
Confidence 5566666 77775 455699999999999999887654 58899999
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++. ..++. +++|+.|.++++|....-...
T Consensus 102 -----snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~~~-------------------------------------- 135 (745)
T KOG0301|consen 102 -----SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELVYS-------------------------------------- 135 (745)
T ss_pred -----cceeeeec--CCcCc-eEecccccceEEecchhhhcc--------------------------------------
Confidence 88999996 34444 899999999999987543211
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+.+|+..|++++.-|++ .+++| .|.+|++|.-. ... .++.+|.+.|+.+++-+++
T Consensus 136 -----------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l-------~tf~gHtD~VRgL~vl~~~-- 191 (745)
T KOG0301|consen 136 -----------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLL-------KTFSGHTDCVRGLAVLDDS-- 191 (745)
T ss_pred -----------cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chh-------hhhccchhheeeeEEecCC--
Confidence 38999999999999988 77788 99999999754 333 3578999999999999984
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~ 346 (487)
.|++++.||.|++|++. ++.+ ..+.+ |++-|.++...+++..++++ .|++++||+.. .
T Consensus 192 ~flScsNDg~Ir~w~~~-ge~l----~~~~g-------------htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e 250 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDLD-GEVL----LEMHG-------------HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---E 250 (745)
T ss_pred CeEeecCCceEEEEecc-Ccee----eeeec-------------cceEEEEEEecCCCCeEEEecCCceEEEeecC---c
Confidence 69999999999999994 4433 44445 58899999977777777765 67999999974 6
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+...+..+...+ +++.+=++|. |++|+.||.||||-...
T Consensus 251 ~~q~I~lPttsi---------------Wsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 251 CVQVITLPTTSI---------------WSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEEecCccce---------------EEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 666666554322 6888877886 67899999999999874
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=172.33 Aligned_cols=236 Identities=18% Similarity=0.264 Sum_probs=177.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
.++|.|++-+|+|.+|+.|...|.|++|.+.+|.. +..+.+|=
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---------------------------L~v~~aHY---------- 123 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---------------------------LNVLSAHY---------- 123 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccH---------------------------HHHHHhhc----------
Confidence 56799999999999999998999999999999976 36677887
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.+|+++.| +.||.+|++|+.||.|.+|.+..---. ....
T Consensus 124 --Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a-~~~~------------------------------------ 162 (476)
T KOG0646|consen 124 --QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSA-DNDH------------------------------------ 162 (476)
T ss_pred --cceeEEEE--eCCCcEEEecCCCccEEEEEEEeeccc-ccCC------------------------------------
Confidence 89999999 689999999999999999988542100 0000
Q ss_pred ccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
...+... +..|.-+|+++...+. ...++++ .|.++++||+..+.....+ .....+.+++.+|.+ ..
T Consensus 163 ~~~p~~~-f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti---------~fp~si~av~lDpae-~~ 231 (476)
T KOG0646|consen 163 SVKPLHI-FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI---------TFPSSIKAVALDPAE-RV 231 (476)
T ss_pred Cccceee-eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE---------ecCCcceeEEEcccc-cE
Confidence 0123333 3899999999988653 4577777 9999999999955444333 234678999999998 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc--ceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
++.|+.+|.|.+.++.+-......+..-.. .........+.+|.+ .|+|++++-||..|++|+ ||.|+|||+.+ .
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~-~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S-~ 309 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGR-HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS-K 309 (476)
T ss_pred EEecCCcceEEeeehhcCCccccccccccc-ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch-H
Confidence 999999999999888764311110111111 112233445677887 999999999999999996 69999999987 7
Q ss_pred ceeeeeecccccc
Q 011368 346 TPVATFKIHEHLR 358 (487)
Q Consensus 346 ~~~~~~~~~~~~~ 358 (487)
++++++....+++
T Consensus 310 Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 310 QCIRTLQTSKGPV 322 (476)
T ss_pred HHHHHHhhhcccc
Confidence 8888777545544
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=3.2e-22 Score=176.95 Aligned_cols=255 Identities=19% Similarity=0.291 Sum_probs=196.9
Q ss_pred hhhhhhhcCCCCCCccc---cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCC
Q 011368 13 EWKCSQAFGERNPDEEL---QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~~---~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (487)
.|.++|. +.+.++..+ .-.+.|.++.+.|||+-|++|+.-.++.|||+.....
T Consensus 444 VWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp----------------------- 499 (705)
T KOG0639|consen 444 VWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP----------------------- 499 (705)
T ss_pred EeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc-----------------------
Confidence 3767666 444444332 2356899999999999999999999999999876543
Q ss_pred cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (487)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (487)
+...++..-. -...+++. +||.+..++++.||.|.|||+.+..+.+.
T Consensus 500 --rikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vrq----------------- 546 (705)
T KOG0639|consen 500 --RIKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVRQ----------------- 546 (705)
T ss_pred --chhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeeec-----------------
Confidence 1122222222 33456666 68999999999999999999998765544
Q ss_pred ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC
Q 011368 170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 248 (487)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 248 (487)
+.+|.+.+.||..++||..|-+| -|++|+-||++.+.+..+
T Consensus 547 ------------------------------fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-------- 588 (705)
T KOG0639|consen 547 ------------------------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-------- 588 (705)
T ss_pred ------------------------------ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh--------
Confidence 48999999999999999999999 999999999996554321
Q ss_pred CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368 249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 328 (487)
Q Consensus 249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 328 (487)
....+.|.++...|++ .++++|-+++.+.+......+. ..+.. |+.-|.++.|.+.|+++
T Consensus 589 -hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yqlhl-------------heScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 589 -HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQLHL-------------HESCVLSLKFAYCGKWF 648 (705)
T ss_pred -hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eeecc-------------cccEEEEEEecccCcee
Confidence 1234679999999999 9999999999988877665431 23333 47889999999999999
Q ss_pred EEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 329 LSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 329 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
++. .|+-+..|.... +..+...+.... |+++.+|.|.++|+||+.|....||.+
T Consensus 649 vStGkDnlLnawrtPy-GasiFqskE~Ss----------------VlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPY-GASIFQSKESSS----------------VLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCcc-ccceeeccccCc----------------ceeeeeccCceEEEecCCCcceEEEEE
Confidence 975 579999999876 655555543332 258999999999999999999988876
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-19 Score=166.83 Aligned_cols=205 Identities=14% Similarity=0.186 Sum_probs=159.3
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...|-+++|++ +..|.+.+.+|.|.-||+.+++. ...+....
T Consensus 69 drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~---------------------------~~~~d~~g---------- 110 (691)
T KOG2048|consen 69 DRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ---------------------------KYNIDSNG---------- 110 (691)
T ss_pred CCceeeEEEcc-CCeEEeecCCceEEEEecccCce---------------------------eEEecCCC----------
Confidence 56799999995 45677778899999999998875 24455555
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+.|.+++.+ |.+..++.|+.||.+..+++..+.+....
T Consensus 111 --g~IWsiai~--p~~~~l~IgcddGvl~~~s~~p~~I~~~r-------------------------------------- 148 (691)
T KOG2048|consen 111 --GAIWSIAIN--PENTILAIGCDDGVLYDFSIGPDKITYKR-------------------------------------- 148 (691)
T ss_pred --cceeEEEeC--CccceEEeecCCceEEEEecCCceEEEEe--------------------------------------
Confidence 889999995 56788999999997777777766654321
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l 269 (487)
.+...+++|.+++|+|++..|++| .||.|++||..++. ...+++++...+.. ..--|++|.|-.+ ..|
T Consensus 149 -------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI 218 (691)
T KOG2048|consen 149 -------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRD--STI 218 (691)
T ss_pred -------ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeec--CcE
Confidence 135668999999999999999999 99999999999554 44454444333333 3345788888877 489
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCC
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM 343 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~ 343 (487)
++|...|+|.+||...+.+. +.+.. |...|.+++..+++.+++++ -|+.|..|...+
T Consensus 219 ~sgDS~G~V~FWd~~~gTLi----qS~~~-------------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLI----QSHSC-------------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred EEecCCceEEEEcccCcchh----hhhhh-------------hhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence 99999999999999998766 55555 47789999999998888875 578888887765
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=178.20 Aligned_cols=292 Identities=15% Similarity=0.134 Sum_probs=194.0
Q ss_pred CCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
..+.+.|.++|..+.|-|....|++++.|.++++||+.+.+.. -...+.||.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------------------------G~~~~~GH~--- 144 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------------------------GGRLNLGHT--- 144 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------------------------cceeecccc---
Confidence 3457789999999999996678999999999999999988652 123588998
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..|.+++|.| .+...|++|+.||.|.|||+............ ..+...........
T Consensus 145 ---------~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~--------------~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 145 ---------GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFD--------------NRIYGRHNTAPTPS 200 (720)
T ss_pred ---------cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHh--------------hhhhccccCCCCCC
Confidence 9999999986 46678999999999999999765422111000 00000000000000
Q ss_pred eeeeeeeccceeeeecccCCCceeE---EEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCC---CCcE
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINS---ISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVI 256 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~---i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v 256 (487)
.+ ..+..+. -..+...|.. +.+..|...||++ .|+.|++||+++.....+.-......+..| .-.+
T Consensus 201 kp-----~~kr~~k-~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 201 KP-----LKKRIRK-WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred ch-----hhccccc-cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 00 0000000 1334444444 4455678888887 599999999996654433211111233334 3467
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCe
Q 011368 257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 335 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~ 335 (487)
.++..+..| .+|++.+.|+.|.+|++.+-.. .....+.+|.. ...-..-..+|++.+|++|+ |..
T Consensus 275 ~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~-----------~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 275 VNLILDSSG-TYLFASCTDNSIYFYNMRSLSI--SPVAEFSGKLN-----------SSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred EEEEecCCC-CeEEEEecCCcEEEEeccccCc--CchhhccCccc-----------ceeeeeeecCCCCceEeccCCCcc
Confidence 888888989 7777777799999999987432 12233333210 11122334689999999995 699
Q ss_pred EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCC
Q 011368 336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
.++|.+.....+...+.+|...+ +.++|.|. -.-++++++|..++||++.++.
T Consensus 341 ayiw~vs~~e~~~~~l~Ght~eV---------------t~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 341 AYIWVVSSPEAPPALLLGHTREV---------------TTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eeeeeecCccCChhhhhCcceEE---------------EEEeeccccCCCceeeccCcceEEEeccCch
Confidence 99999988777788888888754 68999873 2346777999999999998763
No 149
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-21 Score=172.53 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=181.4
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
++|.+++- +++|.+|+.|+-.|.|++|.+.+|.++.+
T Consensus 82 g~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v----------------------------------------- 118 (476)
T KOG0646|consen 82 GPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNV----------------------------------------- 118 (476)
T ss_pred cceeeeec--CCCceEEEeecccCcEEEEEeccccHHHH-----------------------------------------
Confidence 78999998 67888888888999999999999987765
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEE-eecCCCCCCCCCCcEEEEEEecCC-CCEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI-VDMKPSNMDDLTEVITSAEFHPIY-CNLLA 270 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~ 270 (487)
+.+|-..|+|+.|+-||.+|++| .||.|.+|.+..--..... ...+.+.+..|.-+|+.+...+.| ...++
T Consensus 119 ------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 119 ------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred ------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence 47999999999999999999999 9999999987532111111 011124578899999999887653 26899
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC----
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS---- 345 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~---- 345 (487)
++|.|.++++||+..+.++ ..+.. ...+.+++.+|.+..+..|. +|.|.+.++....
T Consensus 193 TaS~D~t~k~wdlS~g~LL----lti~f--------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLL----LTITF--------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred EecCCceEEEEEeccceee----EEEec--------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 9999999999999999766 44333 36899999999999999985 5999988875311
Q ss_pred -----------ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 346 -----------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 346 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
..+..+.+|.+.. .|++++++-||..|++|+.||.+.|||+.+. ..+.++....+
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~-------------~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~kg 320 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENES-------------AITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQTSKG 320 (476)
T ss_pred cccccccccccceeeeeccccCCc-------------ceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhhhcc
Confidence 1233444554411 2379999999999999999999999999876 45666666888
Q ss_pred ccccceEeeCCcc
Q 011368 415 ENRKPILQAAPRA 427 (487)
Q Consensus 415 ~v~~~~~~~~~~~ 427 (487)
+|+.+.+.|-.++
T Consensus 321 pVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 321 PVTNLQINPLERG 333 (476)
T ss_pred ccceeEeeccccc
Confidence 9999988765333
No 150
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=2.9e-21 Score=175.64 Aligned_cols=108 Identities=10% Similarity=0.060 Sum_probs=91.0
Q ss_pred eeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCc------eeEEEeccCCccccceEeeCCccccccccceeeecccce-e
Q 011368 373 KFECSVSG-DGLHFATGSYSNLLRIFSHGVGSA------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H 444 (487)
Q Consensus 373 ~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~ 444 (487)
|+++.|.| |...||++++||.|++|.+..++. ....+.+|.+.|..+-|.|.. ..+ |++++.|.. +
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-adv-----La~asyd~Ti~ 703 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-ADV-----LAVASYDSTIE 703 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-hhH-----hhhhhccceee
Confidence 57899999 788999999999999999987542 356888999999999999952 333 889999999 9
Q ss_pred cCCC--CCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 445 ENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 445 ~w~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
+|+. ......+.+|.+.|.++||||||+.+|+.+.|+ +++|.
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9944 455667789999999999999999999999655 88885
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=163.81 Aligned_cols=288 Identities=18% Similarity=0.200 Sum_probs=195.6
Q ss_pred CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (487)
Q Consensus 45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~ 124 (487)
..+|++...|.|++||..+++. +..++++. ..++.++|...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~---------------------------l~~fk~~~------------~~~N~vrf~~~ 81 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL---------------------------LEEFKGPP------------ATTNGVRFISC 81 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh---------------------------hheecCCC------------CcccceEEecC
Confidence 5688898999999999988765 47789998 88899999742
Q ss_pred CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD 204 (487)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
.....+.+|+.||+|++||++........ . ...+.
T Consensus 82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--------------------------------------------~-~~~~~ 116 (376)
T KOG1188|consen 82 DSPHGVISCSSDGTVRLWDIRSQAESARI--------------------------------------------S-WTQQS 116 (376)
T ss_pred CCCCeeEEeccCCeEEEEEeecchhhhhe--------------------------------------------e-ccCCC
Confidence 24567889999999999999876533221 1 13343
Q ss_pred -CceeEEEeCCCCCEEEEe-----cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeE
Q 011368 205 -FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 278 (487)
Q Consensus 205 -~~v~~i~~s~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 278 (487)
.+..|++.+-+++.+++| .+-.|.+||++...+.+.. -.+.|.+.|+++.|+|..+++|++||.||.|
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 566777777778888886 3678999999976664443 2567999999999999999999999999999
Q ss_pred EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEEEeCCeEEEEeCCCCCceeeeeecccc
Q 011368 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 356 (487)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 356 (487)
.|||+.....-.....++.. ...|..+.|..++ +.+......+..+|+++. +.+...+....-
T Consensus 191 nlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~-~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELED-GSEETWLENPDV 255 (376)
T ss_pred EeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEccC-CChhhcccCccc
Confidence 99999876433333334433 5779999999887 433334459999999986 554444433321
Q ss_pred cccccccccCCCCcceeeEEEEcC-CCCEEEEEcC-CCcEEEEEeCC---C--CceeEEEec-cCCccccceEeeCCccc
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSY-SNLLRIFSHGV---G--SAGGITVEA-GKNENRKPILQAAPRAR 428 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~-dg~i~iwd~~~---~--~~~~~~~~~-~~~~v~~~~~~~~~~~~ 428 (487)
...........+.+ .. +.+| +....+.++. -|...++-+.. + ......+++ |...|+++.|.. .+.
T Consensus 256 ~~~d~r~~~~~dY~---I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~--~~~ 329 (376)
T KOG1188|consen 256 SADDLRKEDNCDYV---IN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV--KND 329 (376)
T ss_pred hhhhHHhhhhhhhe---ee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc--ccc
Confidence 11111111111111 11 1223 4455555554 56666665542 2 223455665 677778877764 344
Q ss_pred cccccceeeecccce-ecCCC
Q 011368 429 RSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 429 ~~~~~~l~~g~~~~~-~~w~~ 448 (487)
+ +-+|+.||. .+|..
T Consensus 330 ~-----l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 330 V-----LYTGGEDGLLQAWKV 345 (376)
T ss_pred e-----eeccCCCceEEEEec
Confidence 4 899999999 99963
No 152
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=5.6e-22 Score=168.58 Aligned_cols=240 Identities=14% Similarity=0.177 Sum_probs=176.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|..|++.. ..+++++.|.+|+.|.++... ..++.+.
T Consensus 105 f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p----------------------------~~tilg~------- 147 (433)
T KOG0268|consen 105 FKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP----------------------------LHTILGK------- 147 (433)
T ss_pred eecccCceeeEEecc--cceEEecCCcceeeeeccCCc----------------------------ceeeecc-------
Confidence 345888999999987 567888899999999986531 2334333
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..+..|.-+ ..+..++|++. .|.|||......+..
T Consensus 148 ------s~~~gIdh~--~~~~~FaTcGe--~i~IWD~~R~~Pv~s----------------------------------- 182 (433)
T KOG0268|consen 148 ------SVYLGIDHH--RKNSVFATCGE--QIDIWDEQRDNPVSS----------------------------------- 182 (433)
T ss_pred ------ccccccccc--cccccccccCc--eeeecccccCCccce-----------------------------------
Confidence 334555542 34567888876 499999976654433
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+.-..+.|.++.|+|. ...|++| .|+.|.+||++......+++ ....-..++|+|.+
T Consensus 183 ------------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi---------~~mRTN~IswnPea 241 (433)
T KOG0268|consen 183 ------------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI---------LTMRTNTICWNPEA 241 (433)
T ss_pred ------------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee---------eeccccceecCccc
Confidence 1334567999999995 5567777 99999999999544333321 11234678999987
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~ 344 (487)
..++++++|..+..||++.-. ..+..+. +|.+.|.++.|||.|+-+++|+ |.+|+||..+.
T Consensus 242 -fnF~~a~ED~nlY~~DmR~l~---~p~~v~~-------------dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~- 303 (433)
T KOG0268|consen 242 -FNFVAANEDHNLYTYDMRNLS---RPLNVHK-------------DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH- 303 (433)
T ss_pred -cceeeccccccceehhhhhhc---ccchhhc-------------ccceeEEEeccCCCcchhccccccceEEEeecCC-
Confidence 889999999999999999743 2234444 4689999999999999999998 59999999874
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+.....+ +.--+..|+++.||.|.+++++||+|+.|++|.....
T Consensus 304 ~~SRdiY--------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 304 GHSRDIY--------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred Ccchhhh--------------hHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 4332222 1222334579999999999999999999999998754
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.2e-21 Score=170.49 Aligned_cols=264 Identities=16% Similarity=0.153 Sum_probs=199.5
Q ss_pred cEEEEEEcCCCCEEEEE--ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
.+.++.|+.... |+++ +.|..|++|.-... . |+...+....+..
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~----------------------~~Vp~~~k~~gd~---------- 81 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-T----------------------PEVPRVRKLTGDN---------- 81 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCC-C----------------------Cccceeeccccch----------
Confidence 488999988664 4444 46778999975433 1 1333334444433
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+..|.+..+ ..++++|+..+.|+|||++...+.+.
T Consensus 82 -~~Cv~~~s~-----S~y~~sgG~~~~Vkiwdl~~kl~hr~--------------------------------------- 116 (673)
T KOG4378|consen 82 -AFCVACASQ-----SLYEISGGQSGCVKIWDLRAKLIHRF--------------------------------------- 116 (673)
T ss_pred -HHHHhhhhc-----ceeeeccCcCceeeehhhHHHHHhhh---------------------------------------
Confidence 123444444 47899999999999999996554433
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC-CCcEEEEEEecCCCCEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLL 269 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l 269 (487)
+.+|.+.|+++.++....+||++ ..|.|.|..+.++.+.. ++... ...|+-+.|+|....+|
T Consensus 117 --------lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt--------~f~~~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 117 --------LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT--------TFTIDSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred --------ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc--------ceecCCCCeEEEeecccccceee
Confidence 48999999999999999999999 89999999998654422 12222 34567899999886678
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE--EeCCeEEEEeCCCCCce
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--RDYMNLKLWDIRMDSTP 347 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s--~~d~~i~iwd~~~~~~~ 347 (487)
.+++.+|.|.+||+...... ..+ ...|..+...|+|+|....|++ |-|..|.+||.+. .+.
T Consensus 181 ~~asd~G~VtlwDv~g~sp~----~~~------------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s 243 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPI----FHA------------SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QAS 243 (673)
T ss_pred EeeccCCeEEEEeccCCCcc----cch------------hhhccCCcCcceecCCccceEEEecccceEEEeeccc-ccc
Confidence 88899999999999876533 222 2346889999999998775554 4679999999986 565
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 425 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 425 (487)
...+...... ..++|+++|.+|++|+..|.|..||++..+..+..+.+|...|++++|.+.+
T Consensus 244 ~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 244 TDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 5555544332 4899999999999999999999999999888899999999999999999863
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4e-21 Score=168.45 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=190.2
Q ss_pred cCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
.-+|.+.+|.|+|. .+++++....++.||+.+.+.. .+..+.+++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-------------------------k~~~~~g~e--------- 302 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-------------------------KLKPPYGVE--------- 302 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccc-------------------------cccCCCCcc---------
Confidence 45899999999998 8999999999999999887653 123334443
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+..+..... ++++++|+..+..|.|.+....+++++..
T Consensus 303 --~~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT~eli~s-------------------------------------- 340 (514)
T KOG2055|consen 303 --EKSMERFEV--SHDSNFIAIAGNNGHIHLLHAKTKELITS-------------------------------------- 340 (514)
T ss_pred --cchhheeEe--cCCCCeEEEcccCceEEeehhhhhhhhhe--------------------------------------
Confidence 144556666 68899999999999999999988886654
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
-.-.+.|..++|+.+++.|+++ .+|.|.+||++.. .++..+. -++. -.-++++.++++ .+|
T Consensus 341 ----------~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~-----D~G~-v~gts~~~S~ng-~yl 402 (514)
T KOG2055|consen 341 ----------FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFV-----DDGS-VHGTSLCISLNG-SYL 402 (514)
T ss_pred ----------eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEe-----ecCc-cceeeeeecCCC-ceE
Confidence 2346779999999999999888 9999999999954 5554321 1111 123567788999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---CCeEEEEeCCCCCc
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDST 346 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---d~~i~iwd~~~~~~ 346 (487)
|+|+..|.|.|||..+-. . ...|.+...+......|++++|++|++.|+.++ ...+++-.+.+ ..
T Consensus 403 A~GS~~GiVNIYd~~s~~---------~--s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS-~T 470 (514)
T KOG2055|consen 403 ATGSDSGIVNIYDGNSCF---------A--STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS-CT 470 (514)
T ss_pred EeccCcceEEEeccchhh---------c--cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc-ee
Confidence 999999999999976521 1 123344444555578999999999999999775 38899998875 44
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
....+..... .+..|++++|||.|.+||.|..+|.+.+|.+.
T Consensus 471 VFsNfP~~n~------------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 VFSNFPTSNT------------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeccCCCCCC------------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 4445544433 23345899999999999999999999999875
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.2e-22 Score=192.60 Aligned_cols=250 Identities=16% Similarity=0.167 Sum_probs=187.3
Q ss_pred ccceeEEEEEecCCCc--EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 113 EEKINRVRWCAAPNGS--MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+.+.++|.+..++. +|+.|..||.|.+||...-..-..
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~-------------------------------------- 105 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANAS-------------------------------------- 105 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcc--------------------------------------
Confidence 3778999996533322 588889999999999875300000
Q ss_pred eccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
...+.. ...|.+.|..+.|++. +++||+| +||.|.|||+......... .-....+.|.+++|+..-..+
T Consensus 106 --~~~la~-~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhI 176 (1049)
T KOG0307|consen 106 --EEVLAT-KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHI 176 (1049)
T ss_pred --hHHHhh-hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHH
Confidence 001111 3789999999999996 4599999 9999999999965543321 012245679999999876578
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE--eC--CeEEEEeCCC
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--DY--MNLKLWDIRM 343 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~--~d--~~i~iwd~~~ 343 (487)
|++++.+|.+.|||++..+.+ -.+..|. -...+..++|+|+.. .|+++ +| -.|.+||+|.
T Consensus 177 LAS~s~sg~~~iWDlr~~~pi----i~ls~~~-----------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPI----IKLSDTP-----------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred hhccCCCCCceeccccCCCcc----cccccCC-----------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 999999999999999987644 2333310 023578999999864 33333 34 7899999998
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
...+++++.+|...+ .++.|++.+ ++|++++.|+.|.+|+.+++ +.+.++....+++..+.|.
T Consensus 242 assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred cCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeec
Confidence 888999999998755 699999955 89999999999999999998 6688888889999999999
Q ss_pred eCCccccccccceeeecccce-ecC
Q 011368 423 AAPRARRSSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 423 ~~~~~~~~~~~~l~~g~~~~~-~~w 446 (487)
|..++. ++..+-+|. .+.
T Consensus 306 pr~P~~------~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 306 PRNPSV------MAAASFDGKISIY 324 (1049)
T ss_pred CCCcch------hhhheeccceeee
Confidence 974433 577777777 666
No 156
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.5e-20 Score=161.57 Aligned_cols=317 Identities=11% Similarity=0.063 Sum_probs=215.5
Q ss_pred CCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (487)
Q Consensus 24 ~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (487)
.......|.+.|++|.||.++++||+|+.|..+++|+++..-. +. ..+++ .+++|..
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--------~k-------------~~KPI-~~~~~~H- 104 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--------RK-------------TPKPI-GVMEHPH- 104 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh--------hc-------------CCCCc-eeccCcc-
Confidence 3445678999999999999999999999999999999863211 00 01111 1333321
Q ss_pred cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
...|.|++| ......+.+|..+++|.+-|+++.+.+.+...
T Consensus 105 ---------~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~---------------------------- 145 (609)
T KOG4227|consen 105 ---------RSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE---------------------------- 145 (609)
T ss_pred ---------ccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc----------------------------
Confidence 178999999 56778899999999999999998876654110
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
....+.|+.+..+|-.+.|++. .++.|.+||.+........+ -+.........+.|+
T Consensus 146 -----------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 146 -----------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----LPANSGKNFYTAEFH 203 (609)
T ss_pred -----------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----eecCCCccceeeeec
Confidence 2234589999999988888888 99999999998544333322 122344567889999
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeC
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI 341 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~ 341 (487)
|..+.+|++.+..+.+.+||.+...........+.+ ++.....-..+.|+|+|..+++-.. ..-.+||+
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----------L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----------LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhcccc----------CcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 999899999999999999999875432111111111 0111223467889999998887543 44567787
Q ss_pred CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC----C--------------
Q 011368 342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----S-------------- 403 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~----~-------------- 403 (487)
.+..-++..+. |... -|-+.+. +-+++|-.|.. +++|+.+=.|++|.+... +
T Consensus 274 ~S~R~~V~k~D-~N~~------GY~N~~T--~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 274 ISQRCFVLKSD-HNPN------GYCNIKT--IKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred ecccceeEecc-CCCC------cceeeee--eeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 65233333332 1110 0001111 14788876654 899999999999998641 1
Q ss_pred ----ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCc
Q 011368 404 ----AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH 451 (487)
Q Consensus 404 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~ 451 (487)
.....+++|...++++-|+|. ..+ |++.+-... ++|+...+
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H--~~~-----l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQH--NNL-----LVSSGVENSFKLWSDHRL 389 (609)
T ss_pred heecceeEEEecccccccceeecCC--cce-----EeccchhhheeccccccC
Confidence 135578999999999999984 333 777776666 99955433
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=2.3e-20 Score=170.87 Aligned_cols=275 Identities=15% Similarity=0.210 Sum_probs=202.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.|+.++|-|||..|+.+. +..+.|||.++|.. +.++++|.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l---------------------------lqtLKgHK------------ 53 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL---------------------------LQPLKGHK------------ 53 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccc---------------------------cccccccc------------
Confidence 699999999998887765 45799999998875 48899999
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
+.|++|+| +.||+++++|+.|+.|.+|+-.- ..+.++.+...+.|+.|.+-+..+.....++ ...|...
T Consensus 54 DtVycVAy--s~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd------FglWS~~ 122 (1081)
T KOG1538|consen 54 DTVYCVAY--AKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD------FGLWSPE 122 (1081)
T ss_pred ceEEEEEE--ccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh------ccccChh
Confidence 99999999 68999999999999999997543 3344455556667777766655544443332 2234333
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC----CCE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY----CNL 268 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~----~~~ 268 (487)
+..... .....+|.+++|+.||++++.| .+|+|.|-+-. +.....+ ..-.+.+++|++++|+|.. ...
T Consensus 123 qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I-----~Rpgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 123 QKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI-----ERPGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred hhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----eCCCCCCCCceEEEecCCCCCCccce
Confidence 222211 3445678899999999999999 99999998665 4444433 1234677899999999863 157
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~ 347 (487)
+++.....++.+|.+.....-.. +.+. -...|+.+.++|+|++.| +|+.+.+|--+ +..
T Consensus 196 ~aV~DW~qTLSFy~LsG~~Igk~--r~L~----------------FdP~CisYf~NGEy~LiGGsdk~L~~fTR~--Gvr 255 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLSGKQIGKD--RALN----------------FDPCCISYFTNGEYILLGGSDKQLSLFTRD--GVR 255 (1081)
T ss_pred EEEEeccceeEEEEecceeeccc--ccCC----------------CCchhheeccCCcEEEEccCCCceEEEeec--CeE
Confidence 88888888888888765332111 1111 134788999999999986 57999999753 666
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+.++.....++ ++++..|++++++.|+.||+|..|++..
T Consensus 256 LGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 256 LGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhhHH
Confidence 66665555543 7999999999999999999999999853
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=1.4e-19 Score=149.65 Aligned_cols=301 Identities=16% Similarity=0.224 Sum_probs=205.1
Q ss_pred cCcEEEEEEcC--C-CCEEEEEe----cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 32 VDIVSAIEFDK--T-GDYLAVGD----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 32 ~~~V~~~~~s~--~-~~~l~~g~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
.-+++++.|+. + +.+||.|+ ..+.|.|-.++...- +...... ..|.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-----------------------e~~~~a~-fd~~--- 96 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-----------------------ELVEDAN-FDHP--- 96 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-----------------------ceeccCC-CCCC---
Confidence 44688999983 2 35788887 456777776652211 1111111 2343
Q ss_pred ccccccccccceeEEEEEecCCCc---EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGS---MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
-+++.+.|.|++.|. +||+++ ..+|+|.+...+...........
T Consensus 97 ---------YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~---------------------- 143 (364)
T KOG0290|consen 97 ---------YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNN---------------------- 143 (364)
T ss_pred ---------CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhcc----------------------
Confidence 889999998765443 344443 47999999743211111000000
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCCCCCCcEEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITS 258 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~ 258 (487)
. ....+..++++..|+. +-++|.++ -|-+..|||++++.. .+++ .+-+|...|..
T Consensus 144 -------------~---kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~D 201 (364)
T KOG0290|consen 144 -------------N---KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYD 201 (364)
T ss_pred -------------C---cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeE
Confidence 0 0145678999999986 67888888 999999999996511 1222 35689999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEE-EeC-Ce
Q 011368 259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS-RDY-MN 335 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s-~~d-~~ 335 (487)
++|...+...||+.+.||.+|+||+|..+-. .++.. ++ ....+...++|+++. ++||+ +.| ..
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHS----TIIYE---~p-------~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHS----TIIYE---DP-------SPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccc----eEEec---CC-------CCCCcceeeccCcCCchHHhhhhcCCce
Confidence 9999987789999999999999999985422 33222 01 113578899999754 56666 345 89
Q ss_pred EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
|.|-|++.+..++..++.|...+ ..++|.|. ...|+++++|..+.|||+.+... +.-.+
T Consensus 268 V~iLDiR~P~tpva~L~~H~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~-----~~~~d 327 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-----ENGED 327 (364)
T ss_pred EEEEEecCCCcceehhhcCcccc---------------cceEecCCCCceeeecCCcceEEEEecccccc-----cCCCC
Confidence 99999999999999999999865 69999995 56899999999999999986411 00000
Q ss_pred ccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCC-CCEEEEecCCeEEEE
Q 011368 415 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANGNSLFFH 485 (487)
Q Consensus 415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd-~~~la~~s~~~~~i~ 485 (487)
| ...+.....|+.++|+|. ..+|+++.++.+-+-
T Consensus 328 --------P-----------------------------ilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 328 --------P-----------------------------ILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred --------c-----------------------------hhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 0 011123458899999965 589999998876554
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=164.44 Aligned_cols=266 Identities=18% Similarity=0.221 Sum_probs=183.0
Q ss_pred EEEEEEcC-------CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 35 VSAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 35 V~~~~~s~-------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..|++|.. -|+|+|.|..|..|.|||++-.....+...+-+...+... ...+.-..-.+|+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~------k~~k~~~~~~gHT------ 243 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKK------KKGKRSNSASGHT------ 243 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhh------hhcccccccccch------
Confidence 35777643 3589999999999999998754443222222222111100 0000011233576
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++|+. .-...|++|+.|.+|++||+.+++....
T Consensus 244 ------davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s----------------------------------- 281 (463)
T KOG0270|consen 244 ------DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSS----------------------------------- 281 (463)
T ss_pred ------HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCccee-----------------------------------
Confidence 8899999963 4457899999999999999999987665
Q ss_pred eeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+..|.+.|.++.|+| ....|++| .|++|.+.|.+.....-.. -...+.|-.++|+|..
T Consensus 282 ------------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--------wk~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 282 ------------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--------WKFDGEVEKVAWDPHS 341 (463)
T ss_pred ------------hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--------EEeccceEEEEecCCC
Confidence 367899999999998 57788899 9999999999943221111 1234678999999998
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE-EEE-eCCeEEEEeCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSR-DYMNLKLWDIRM 343 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~s~-~d~~i~iwd~~~ 343 (487)
+..+++++.||.|+-+|+|+... .+.++.. |...|.++++++.-..+ +++ .++.|++|++..
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~---~vwt~~A-------------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGK---PVWTLKA-------------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCC---ceeEEEe-------------ccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 78899999999999999998642 2355555 58899999999876554 455 469999999974
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCCCc
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
..+ .....|.-....+ .++++.|+- -.++.|+..+.++|||+.+...
T Consensus 406 -~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 406 -DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred -CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEeecccChh
Confidence 222 1122222211111 256666653 4677888888999999988744
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=9.4e-20 Score=159.26 Aligned_cols=260 Identities=17% Similarity=0.195 Sum_probs=177.4
Q ss_pred cceeEEEEEec-----CCCcEEEEEeCCCcEEEEEcccccee-EeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 114 EKINRVRWCAA-----PNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 114 ~~I~~v~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
....|++|.-. ..|+++|.|+.|..|.|||+.-.... ....+.. ..+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs---------------------~~sk----- 227 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGS---------------------KASK----- 227 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeech---------------------hhhh-----
Confidence 44467777521 23679999999999999998632211 0000000 0000
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
.......+.....+|++.|.+++|+.+ .+.||+| .|.+|++||+.++ ++..+ +..|...|.+++|+|..
T Consensus 228 -~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s-------~~~~~k~Vq~l~wh~~~ 298 (463)
T KOG0270|consen 228 -KKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSS-------ITHHGKKVQTLEWHPYE 298 (463)
T ss_pred -hhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-Cccee-------hhhcCCceeEEEecCCC
Confidence 000000001112589999999999875 5577888 9999999999954 44433 46789999999999998
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-EE-eCCeEEEEeCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SR-DYMNLKLWDIRM 343 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~-~d~~i~iwd~~~ 343 (487)
+.+|++|+.|+++.+.|+|.... ....|+. .+.|..++|.|.....+ ++ .||+|+-+|+|.
T Consensus 299 p~~LLsGs~D~~V~l~D~R~~~~---s~~~wk~--------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 299 PSVLLSGSYDGTVALKDCRDPSN---SGKEWKF--------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred ceEEEeccccceEEeeeccCccc---cCceEEe--------------ccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence 89999999999999999995221 1244554 56899999999876544 44 459999999999
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccC---Cccccc
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---NENRKP 419 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~ 419 (487)
.++++.++++|...+ .++++++. ..++++++.|+.+++|++...... ....|. +...+.
T Consensus 362 ~~~~vwt~~AHd~~I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 362 PGKPVWTLKAHDDEI---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCF 424 (463)
T ss_pred CCCceeEEEeccCCc---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeec
Confidence 889999999999876 48888874 457889999999999999854321 111111 112233
Q ss_pred eEeeCCccccccccceeeecccce-ecCCC
Q 011368 420 ILQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
++.|. ...+ ++.|+.... ++|+.
T Consensus 425 ~~~~~-~a~~-----la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 425 ALDPD-VAFT-----LAFGGEKAVLRVWDI 448 (463)
T ss_pred ccCCC-cceE-----EEecCccceEEEeec
Confidence 33443 2222 788888887 99954
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.9e-20 Score=152.27 Aligned_cols=200 Identities=16% Similarity=0.247 Sum_probs=149.1
Q ss_pred eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
-.++.| ++.|.+||+|+.||.|.|||+.+....+.
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~------------------------------------------- 60 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM------------------------------------------- 60 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence 588899 67899999999999999999998764433
Q ss_pred eeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368 196 TKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 274 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 274 (487)
+.+|..+|.+++||++|+.|+++ .|..|.+||+..+. ++..+ ...++|+.+.|+|...+..++.-.
T Consensus 61 ----lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~ri--------rf~spv~~~q~hp~k~n~~va~~~ 127 (405)
T KOG1273|consen 61 ----LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRI--------RFDSPVWGAQWHPRKRNKCVATIM 127 (405)
T ss_pred ----hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEE--------EccCccceeeeccccCCeEEEEEe
Confidence 48999999999999999999999 99999999999665 44332 245789999999976455555555
Q ss_pred CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeec
Q 011368 275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI 353 (487)
Q Consensus 275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~ 353 (487)
+..-.+-++..+.- ..+.. ..+... ...-.+..|.+.|+++++|.. |.+.++|..+ .+++..++.
T Consensus 128 ~~sp~vi~~s~~~h-----~~Lp~--d~d~dl------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~ri 193 (405)
T KOG1273|consen 128 EESPVVIDFSDPKH-----SVLPK--DDDGDL------NSSASHGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRI 193 (405)
T ss_pred cCCcEEEEecCCce-----eeccC--CCcccc------ccccccccccCCCCEEEEecCcceEEEEecch-heeeeeeee
Confidence 55455555554321 11211 000000 112233468899999999965 9999999997 677777765
Q ss_pred ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
.... .|..+.++..|+.|+.-+.|..||.|+++.
T Consensus 194 ts~~--------------~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 194 TSVQ--------------AIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred chhe--------------eeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 5411 124899999999999999999999999873
No 162
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=171.64 Aligned_cols=206 Identities=17% Similarity=0.282 Sum_probs=159.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
+...|.+++.. +.+|++|+.+++|.+|....++.. ..+.-.+
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~---------------------------~iL~Rft--------- 96 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED---------------------------TILARFT--------- 96 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc---------------------------ceeeeee---------
Confidence 77788888865 458999999999999998877542 1222222
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
-++.+++| +.+|++++.|+.|-.|++-++.+......
T Consensus 97 ---lp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~-------------------------------------- 133 (933)
T KOG1274|consen 97 ---LPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKV-------------------------------------- 133 (933)
T ss_pred ---ccceEEEE--ecCCcEEEeecCceeEEEEeccccchhee--------------------------------------
Confidence 67899999 57899999999999999999988765543
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC-CCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~ 268 (487)
+.+|..+|.++.|+|++++||++ .||.|++||+.. +.+..++..-......- ...+..++|+|+| ..
T Consensus 134 ---------lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~ 202 (933)
T KOG1274|consen 134 ---------LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKG-GT 202 (933)
T ss_pred ---------ecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCC-Ce
Confidence 48999999999999999999999 999999999994 44433332111112222 4556789999998 78
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
+++...|+.|++|+..+.... ..+.. ..+...+..++|+|+|+|||++. +|.|.|||.++
T Consensus 203 la~~~~d~~Vkvy~r~~we~~----f~Lr~-----------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWELQ----FKLRD-----------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeeccCCeEEEEccCCceeh----eeecc-----------cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 888889999999999887644 22222 12234599999999999999986 69999999975
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.5e-21 Score=186.16 Aligned_cols=263 Identities=15% Similarity=0.230 Sum_probs=198.3
Q ss_pred CCCccccccCcEEEEEEcCCCCE----EEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC
Q 011368 24 NPDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS 99 (487)
Q Consensus 24 ~~~~~~~h~~~V~~~~~s~~~~~----l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
.+.-.+.-....+.++|.+.|.. ||.|..||.|.+||...... ......+.++..
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------NASEEVLATKSK 114 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------CcchHHHhhhcc
Confidence 45555666778999999998865 88899999999999765311 114455677888
Q ss_pred CCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCC
Q 011368 100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (487)
Q Consensus 100 h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
|. +.|..+.|++ ..+++|++|+.||.|.|||+..-+.-....
T Consensus 115 h~------------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~------------------------- 156 (1049)
T KOG0307|consen 115 HT------------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG------------------------- 156 (1049)
T ss_pred cC------------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC-------------------------
Confidence 88 9999999975 345699999999999999998743211100
Q ss_pred CCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368 180 PSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 257 (487)
-..-.+.|.+++|+.. ...|+++ .+|.+.|||++..+..+++- .......+.
T Consensus 157 --------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls------~~~~~~~~S 210 (1049)
T KOG0307|consen 157 --------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS------DTPGRMHCS 210 (1049)
T ss_pred --------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc------cCCCcccee
Confidence 0234678999999875 4556677 88999999999665544321 111223477
Q ss_pred EEEEecCCCCEEEEEeCCC---eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEE-e
Q 011368 258 SAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-D 332 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~-~ 332 (487)
.++|+|++...|++++.|. .|.+||+|.-... .+++++ |...|.++.|++.+ ++|+++ .
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP---~k~~~~-------------H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP---LKILEG-------------HQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCc---hhhhcc-------------cccceeeeccCCCCchhhhcccC
Confidence 8999999877888888754 6999999975432 355555 58899999999877 677765 5
Q ss_pred CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCCC
Q 011368 333 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 333 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~~ 403 (487)
|+.|.+|+.++ ++.+..+.....+. +.+.|.|... .+++++-||.|-||.+....
T Consensus 275 D~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 79999999998 88888888766643 6999999554 88899999999999998764
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.6e-20 Score=168.80 Aligned_cols=282 Identities=15% Similarity=0.179 Sum_probs=198.2
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
....|.+.|+.++|.|....|++++.||++.+|++.... .......+++.+|.+|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-------------------~s~~~~~epi~tfraH~----- 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-------------------KSAEKDVEPILTFRAHE----- 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-------------------CccccceeeeEEEeccc-----
Confidence 355689999999999999999999999999999994321 12233677899999999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
++|.|++. .++++.+++|+-||+|+.|++.... -..-.
T Consensus 345 -------gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds-------------------------------- 382 (577)
T KOG0642|consen 345 -------GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPDDS-------------------------------- 382 (577)
T ss_pred -------CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Ccccc--------------------------------
Confidence 99999999 5789999999999999999886321 10000
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
++ .......+.||.+.|+.+++++....|++| .||++++|+......+. +. .-+.| +...++.+-...
T Consensus 383 ---~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~--f~----~~~e~-g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 383 ---YD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCT--FG----EPKEH-GYPLSVDRTSSR 451 (577)
T ss_pred ---cC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccc--cC----Ccccc-CCcceEeeccch
Confidence 00 011112248999999999999998899999 99999999988444311 10 01112 223555554433
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~ 344 (487)
+.++++...-+.-.++++...... +.+.. ...+.... ...+..+.++|.+.+.+++ .++.|+++|..+
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~----~~~~s-~~~~~~~~-----~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~- 520 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDL----LIFES-SASPGPRR-----YPQINKVVSHPTADITFTAHEDRSIRFFDNKT- 520 (577)
T ss_pred hHhhhhhcccccccchhhhhhhhe----eeccc-cCCCcccc-----cCccceEEecCCCCeeEecccCCceecccccc-
Confidence 233333333344444444443322 44443 22222222 2467889999999888887 469999999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 412 (487)
+.++.....|...+ +++++.|+|.+|++|+.|+.+++|.+... ........|
T Consensus 521 ~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld~k-~~~~es~~~ 572 (577)
T KOG0642|consen 521 GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLDVK-TCVLESTAH 572 (577)
T ss_pred cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhccch-heeeccccc
Confidence 88998888888754 69999999999999999999999999765 334444444
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.7e-20 Score=157.78 Aligned_cols=267 Identities=14% Similarity=0.213 Sum_probs=184.8
Q ss_pred cccCcEEEEEEcCC----CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 30 ~h~~~V~~~~~s~~----~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
.|....+.++|+-+ ..+||.|+.-|.|+|.|+..++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~---------------------------~~~~~ghG---- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC---------------------------SKNYRGHG---- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh---------------------------ccceeccC----
Confidence 35667888888753 46899999999999999987765 47789999
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|+.+.|+| .+.+++++++.|.+|++|++++..+..+...
T Consensus 136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG------------------------------ 176 (385)
T KOG1034|consen 136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGG------------------------------ 176 (385)
T ss_pred --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEecc------------------------------
Confidence 8999999987 4557999999999999999999987765321
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc--eeEEe-----------------ecC
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIV-----------------DMK 245 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~-----------------~~~ 245 (487)
..+|.+.|.++.|+++|.+|++| .|.+|++|++....- .++.. ..+
T Consensus 177 --------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 177 --------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred --------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 37999999999999999999999 999999999983210 00000 000
Q ss_pred C-CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEE--E
Q 011368 246 P-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIK--F 321 (487)
Q Consensus 246 ~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~--~ 321 (487)
. .+..-|...|.|+.|- | .++++=+-++.|..|.... ++.+ .....-.........+.-....|+-+. |
T Consensus 243 ~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~----~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESI----HNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred cccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhh----hccCCCccceeeeeEeccCccceEEEEEee
Confidence 0 0123366667777775 4 6889988899999998732 1111 000000000000011222234555554 4
Q ss_pred cCCCCEEEEEeC-CeEEEEeCCCCCcee-eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 322 ANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 322 s~~~~~l~s~~d-~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
.|-+++||.|.. |.|++||++....+. .++..+. +...|...+||.||..|+..++|++|.-||.
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-------------~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-------------SGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-------------ccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 577889999875 999999998633221 1222111 1113368999999999999999999999986
Q ss_pred C
Q 011368 400 G 400 (487)
Q Consensus 400 ~ 400 (487)
-
T Consensus 383 v 383 (385)
T KOG1034|consen 383 V 383 (385)
T ss_pred e
Confidence 4
No 166
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.6e-18 Score=164.14 Aligned_cols=381 Identities=15% Similarity=0.135 Sum_probs=230.3
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I 116 (487)
...||+|+++++... +..|.||...++++. +.+.+|. .++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i---------------------------~~l~~~~------------a~l 60 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECI---------------------------TSLEDHT------------APL 60 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhh---------------------------hhccccc------------Ccc
Confidence 346999999888775 458999999999874 6889998 899
Q ss_pred eEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeee----------ecccccc-ccccccC------
Q 011368 117 NRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE----------NTLLAEK-NFMNEHN------ 178 (487)
Q Consensus 117 ~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~------ 178 (487)
..+.+.|++.. .++.+++.||.|++||...+.+++....+...-+... .+.+.+. ..+....
T Consensus 61 ~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q 140 (792)
T KOG1963|consen 61 TSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQ 140 (792)
T ss_pred ceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccc
Confidence 99999876554 5677899999999999999888776655443322211 1111110 0000000
Q ss_pred ----------------------------CCCcceeeee------eeeccceeee-----ecccCCCceeEEEeCCCCCEE
Q 011368 179 ----------------------------PPSFAHGYHL------EWTENMATKV-----YPHAHDFNINSISNNSDCETF 219 (487)
Q Consensus 179 ----------------------------~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~v~~i~~s~~~~~l 219 (487)
.....+.... .|......+. .-..|...+++.+++|+++++
T Consensus 141 ~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~ 220 (792)
T KOG1963|consen 141 SSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYL 220 (792)
T ss_pred eeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceE
Confidence 0000000000 0221111111 113466678999999999999
Q ss_pred EEe-cCCeEEEEEccC-CCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeec
Q 011368 220 VSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 297 (487)
Q Consensus 220 ~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 297 (487)
|+| .||.|.+|.--. ...... ...+.=|...|.+++|+++| .+|++|+.+|.+.+|.+.+++. +.+.
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~~t-----~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qfLP 289 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDSET-----CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QFLP 289 (792)
T ss_pred EEeccCCcEEEEecccccccccc-----ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----cccc
Confidence 999 999999996442 121111 12345688899999999999 9999999999999999998762 1111
Q ss_pred ccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccc----------------
Q 011368 298 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPK---------------- 360 (487)
Q Consensus 298 ~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---------------- 360 (487)
...+.|..+.+|||+.+.+.. .|+.|.+-...+ ......+.+.....+.
T Consensus 290 -------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 290 -------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred -------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcC
Confidence 125689999999999977764 688988887643 2222222221111000
Q ss_pred ---------------cccccCCCCcce------------------eeEEEEcCCCCEEEEEc--------CC--CcEEEE
Q 011368 361 ---------------LCDLYNNDSIFD------------------KFECSVSGDGLHFATGS--------YS--NLLRIF 397 (487)
Q Consensus 361 ---------------~~~~~~~~~~~~------------------~~~~~~s~d~~~l~sg~--------~d--g~i~iw 397 (487)
..+++....++. +++++.+-.|.+++|+- .| ..+++|
T Consensus 356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW 435 (792)
T KOG1963|consen 356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW 435 (792)
T ss_pred CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence 001111111110 12222333344444431 11 234555
Q ss_pred EeCCCCce----eEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC--CCcc------c--c--ccccCC
Q 011368 398 SHGVGSAG----GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHH------E--L--SYNLSS 460 (487)
Q Consensus 398 d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~------~--~--~~~~~~ 460 (487)
........ ......|.......++.+...... .++.+.++. ++|.. .+.. . . ..-|..
T Consensus 436 ~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~-----~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~ 510 (792)
T KOG1963|consen 436 QYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVR-----CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKT 510 (792)
T ss_pred EEcCCcceeEEEEEEecCCCceeEEEEEecCcccce-----eEEeccCCeEEEEEEecccccCcCccceEEeeeeccccC
Confidence 55433211 112234655555555554322223 788889998 99922 1010 0 0 112567
Q ss_pred CeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368 461 KLLHLAWHPTTNLIACANGNSLFFHYA 487 (487)
Q Consensus 461 ~v~~~~~spd~~~la~~s~~~~~i~~~ 487 (487)
+++..+|+.||..||++.+|.+.+|..
T Consensus 511 ~i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 511 PITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred cccchhhcCCCcEEEEecCCEEEEecC
Confidence 899999999999999999999999963
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-20 Score=164.54 Aligned_cols=222 Identities=14% Similarity=0.184 Sum_probs=177.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.-.|++......|+++|+..+.|+|||+..... .+.+++|+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~---------------------------hr~lkdh~------------ 121 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI---------------------------HRFLKDHQ------------ 121 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHH---------------------------hhhccCCc------------
Confidence 445666666668999999999999999874332 46789999
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|++|.+ +..+.+||+++..|.|.|..+.++......
T Consensus 122 stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f---------------------------------------- 159 (673)
T KOG4378|consen 122 STVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTF---------------------------------------- 159 (673)
T ss_pred ceeEEEEe--cCCcceeEEeccCCcEEEEecccCccccce----------------------------------------
Confidence 89999999 577899999999999999999887643321
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
-.+....|+-+.++|..+++.+ + ++|.|.+||+....... .-.+.|..+...++|+|..+.+|++
T Consensus 160 ------~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-------~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 160 ------TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-------HASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ------ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-------chhhhccCCcCcceecCCccceEEE
Confidence 1233455678999998777665 5 99999999999444333 2357899999999999998889999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~ 350 (487)
.+.|..|.+||.+..+.. ..+.. ..+...++|+++|.+|++|.. |.|..||++....++..
T Consensus 227 VG~Dkki~~yD~~s~~s~----~~l~y--------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQAST----DRLTY--------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred ecccceEEEeeccccccc----ceeee--------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 999999999999986644 33333 358899999999999999965 99999999988889999
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCC
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 382 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 382 (487)
+..|...+ ++++|-|..
T Consensus 289 ~sah~~sV---------------t~vafq~s~ 305 (673)
T KOG4378|consen 289 RSAHDASV---------------TRVAFQPSP 305 (673)
T ss_pred eeecccce---------------eEEEeeecc
Confidence 99999865 578876543
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=2e-19 Score=154.92 Aligned_cols=296 Identities=17% Similarity=0.219 Sum_probs=195.7
Q ss_pred hhhhhhhcCCCCCCccccccCcEEEEEEcC-----CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccC
Q 011368 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS 87 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (487)
+-+|.+.||.....+.--..=.|+-.+|.. +.++||. +|+...+..- ....+.+.+.
T Consensus 8 ~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGgaf-----~ViPl~k~Gr----- 69 (472)
T KOG0303|consen 8 SSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGAF-----LVIPLVKTGR----- 69 (472)
T ss_pred hhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcce-----eecccccccc-----
Confidence 346778888665555555555677777754 2344443 3333333110 0000000000
Q ss_pred CCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (487)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
-....-.+.||+ ++|..++|+| .++..||+|+.|.+|.||.+..+.+....
T Consensus 70 --~d~~~P~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~l-------------- 120 (472)
T KOG0303|consen 70 --MDASYPLVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDL-------------- 120 (472)
T ss_pred --cCCCCCCccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCc--------------
Confidence 111234567888 9999999998 56788999999999999999876543221
Q ss_pred ccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecC
Q 011368 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK 245 (487)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 245 (487)
.+++.. +.+|...|--++|+|. .+.|+++ .|.+|.+|++.++...+.
T Consensus 121 -------------------------tepvv~-L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~----- 169 (472)
T KOG0303|consen 121 -------------------------TEPVVE-LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT----- 169 (472)
T ss_pred -------------------------ccceEE-EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee-----
Confidence 112222 4899999999999995 5677777 999999999997765554
Q ss_pred CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC
Q 011368 246 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 325 (487)
Q Consensus 246 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~ 325 (487)
+. |...|+++.|+.+| .+|++.+.|..|||||.++++.+ ..-..|.. ..-..+.|-.+|
T Consensus 170 ---l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v----~e~~~heG------------~k~~Raifl~~g 228 (472)
T KOG0303|consen 170 ---LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVV----SEGVAHEG------------AKPARAIFLASG 228 (472)
T ss_pred ---cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEe----eecccccC------------CCcceeEEeccC
Confidence 23 99999999999999 99999999999999999999865 22233311 234566788889
Q ss_pred CEEEEE----eCCeEEEEeCCCCCceeee--eecccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcCCCcEEEEE
Q 011368 326 QHLLSR----DYMNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFS 398 (487)
Q Consensus 326 ~~l~s~----~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~dg~i~iwd 398 (487)
.++.+| ++..+-+||...-..++.. +...++ |.---|.+|.+.|. +|-.|+.|+.|.
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG----------------vl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG----------------VLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCc----------------eEEeeecCCCCEEEEEecCCcceEEEE
Confidence 866666 2489999998764444322 222222 12344567777665 556799999999
Q ss_pred eCCCCceeEEEec--cCCccccceEee
Q 011368 399 HGVGSAGGITVEA--GKNENRKPILQA 423 (487)
Q Consensus 399 ~~~~~~~~~~~~~--~~~~v~~~~~~~ 423 (487)
+.+...-++.+.. ...+-+.+.+-|
T Consensus 293 it~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred ecCCCceeEEecccccCCccccccccc
Confidence 9887544444443 344555566655
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=7.7e-19 Score=145.25 Aligned_cols=225 Identities=17% Similarity=0.235 Sum_probs=157.7
Q ss_pred cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--CCCCEEEEEeCCCeEE
Q 011368 202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGFVR 279 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg~i~ 279 (487)
.+-+.|.|+.|.|++..+++-.|..|.+|++.........+..+ .-.++....++-+|+| ++ +.+++ ..|++++
T Consensus 121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss--~s~e~~~~ftsg~WspHHdg-nqv~t-t~d~tl~ 196 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSS--ESAEMRHSFTSGAWSPHHDG-NQVAT-TSDSTLQ 196 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeeccc--ccccccceecccccCCCCcc-ceEEE-eCCCcEE
Confidence 55678999999999999988889999999999665533332111 1123556678889999 34 55544 5688999
Q ss_pred EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE-EEEeC-CeEEEEeCCCCCceeeeeeccccc
Q 011368 280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPVATFKIHEHL 357 (487)
Q Consensus 280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~ 357 (487)
.||+++.... ..++. .|...|..+.|+|+-+++ ++|+| |.|+|||.+....++..+.+|..+
T Consensus 197 ~~D~RT~~~~----~sI~d------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 197 FWDLRTMKKN----NSIED------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred EEEccchhhh----cchhh------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 9999986533 22222 246789999999998754 55654 999999999888999999999996
Q ss_pred ccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccc-----eEeeCCcccccc
Q 011368 358 RPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-----ILQAAPRARRSS 431 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~~~ 431 (487)
+ +++.|+|. .++|++|+.|..|.+|....-....+....+...-... ...|..++
T Consensus 261 v---------------W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg---- 321 (370)
T KOG1007|consen 261 V---------------WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG---- 321 (370)
T ss_pred E---------------EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc----
Confidence 5 89999994 56788999999999999875432222111111110000 00011122
Q ss_pred ccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEE-EEecCCeEEE
Q 011368 432 LSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI-ACANGNSLFF 484 (487)
Q Consensus 432 ~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~l-a~~s~~~~~i 484 (487)
.+..+..|++.|.+++||.-.+++ |+-|.||-.|
T Consensus 322 -------------------~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 322 -------------------QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred -------------------ccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 445667899999999999998875 5777777544
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=9e-19 Score=159.68 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=106.8
Q ss_pred EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe-C
Q 011368 256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-Y 333 (487)
Q Consensus 256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~-d 333 (487)
|+.+.|+|-....|+++++||.|++|.+..+.+.. ....+...++.|...|+++.|+|- ...|++++ |
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e----------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE----------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCc----------ccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 67888888776899999999999999998765431 111233446678899999999985 44666665 5
Q ss_pred CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 413 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 413 (487)
-+|++||+++ ......+.+|...+ ++++|||||+.+|+.+.||+|++|+-+.++..+++-++..
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdqI---------------f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQI---------------FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCce---------------eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 9999999997 88888999999854 6999999999999999999999999998877666555544
Q ss_pred C
Q 011368 414 N 414 (487)
Q Consensus 414 ~ 414 (487)
+
T Consensus 764 g 764 (1012)
T KOG1445|consen 764 G 764 (1012)
T ss_pred c
Confidence 3
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=160.84 Aligned_cols=271 Identities=14% Similarity=0.219 Sum_probs=191.3
Q ss_pred CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (487)
Q Consensus 45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~ 124 (487)
..|+.++.||.+.|.+-... .-....+|. ++|.+-+| +
T Consensus 76 d~~~i~s~DGkf~il~k~~r----------------------------VE~sv~AH~------------~A~~~gRW--~ 113 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR----------------------------VERSISAHA------------AAISSGRW--S 113 (737)
T ss_pred ceEEEEcCCceEEEecccch----------------------------hhhhhhhhh------------hhhhhccc--C
Confidence 46777888999998874322 235678888 99999999 6
Q ss_pred CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD 204 (487)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
++|.-|++++.||.|++|.-.+.- .. .+....
T Consensus 114 ~dGtgLlt~GEDG~iKiWSrsGML-RS-----------------------------------------------tl~Q~~ 145 (737)
T KOG1524|consen 114 PDGAGLLTAGEDGVIKIWSRSGML-RS-----------------------------------------------TVVQNE 145 (737)
T ss_pred CCCceeeeecCCceEEEEeccchH-HH-----------------------------------------------HHhhcC
Confidence 899999999999999999865431 11 124567
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368 205 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 284 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 284 (487)
.+|+|++|.|+.+.++.|..+.+.|=-+..+.+.+ ...+|.+-|.++.|+|.. +++++|++|-..++||-.
T Consensus 146 ~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred ceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEEEEeecCccc-cceeecCCceeEEeeccc
Confidence 88999999999999999977788877777544443 467999999999999998 999999999999999977
Q ss_pred CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccc
Q 011368 285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
... .|.. ..|+.+|++++|+|+ +.++.++.+++|+=..+. +
T Consensus 217 G~~-------Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~------------G-------- 257 (737)
T KOG1524|consen 217 GAN-------LFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV------------G-------- 257 (737)
T ss_pred Ccc-------cccC-----------Chhccceeeeeeccc-cceeeeeeeeeeecCCCc------------c--------
Confidence 542 2222 235789999999999 677778777777322211 1
Q ss_pred cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeeccccee
Q 011368 365 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAH 444 (487)
Q Consensus 365 ~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 444 (487)
++ +.++||+||..+++|+..|.+.+=.+-........++....+-..+...
T Consensus 258 ----Si---fnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vr---------------------- 308 (737)
T KOG1524|consen 258 ----SI---FNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVR---------------------- 308 (737)
T ss_pred ----ce---EEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEee----------------------
Confidence 22 5899999999999999999877655543322222222211111111111
Q ss_pred cCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 445 ENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 445 ~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
...........+...|...+ -...+|++++...+|+|+
T Consensus 309 --dV~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys 346 (737)
T KOG1524|consen 309 --DVATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYS 346 (737)
T ss_pred --hhhhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEe
Confidence 11112234455666666555 446788888888899986
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.7e-19 Score=161.97 Aligned_cols=249 Identities=14% Similarity=0.181 Sum_probs=174.3
Q ss_pred eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (487)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (487)
++...++||+ +.|.+|.. .+.|.+|++|+.||+|+||.+.++.++...
T Consensus 391 ~~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~------------------ 438 (733)
T KOG0650|consen 391 RCALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTV------------------ 438 (733)
T ss_pred eeeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEE------------------
Confidence 4567789999 99999999 568999999999999999999999876652
Q ss_pred ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCC--EEEEecCCeEEEEEccCCCceeE-----Eee-
Q 011368 172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFN-----IVD- 243 (487)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~d~~i~iwd~~~~~~~~~-----~~~- 243 (487)
...+.|.|++|+|.+. .||++.+..+.|-+..-+.+... .+.
T Consensus 439 ------------------------------~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 439 ------------------------------QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLAS 488 (733)
T ss_pred ------------------------------eecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhc
Confidence 2344677888877543 44445333354444332211000 000
Q ss_pred c----C-------------------CCCCCCCCCcEEEEEEecCCCCEEEEEeCC---CeEEEEEccCCccccccceeec
Q 011368 244 M----K-------------------PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILR 297 (487)
Q Consensus 244 ~----~-------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~ 297 (487)
. . ....-.|...|..+.|+..| .+|++...+ ..|.|+++...... .-|.
T Consensus 489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~PF~ 563 (733)
T KOG0650|consen 489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SPFR 563 (733)
T ss_pred CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cchh
Confidence 0 0 00112467789999999999 999998764 47888888765432 2222
Q ss_pred ccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEE
Q 011368 298 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 377 (487)
Q Consensus 298 ~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (487)
. -.+.|.++.|+|...+|+.++...|+|||+.. ...+..+.....++ ..++
T Consensus 564 k-------------skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi---------------S~ms 614 (733)
T KOG0650|consen 564 K-------------SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI---------------SSMS 614 (733)
T ss_pred h-------------cCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee---------------eeee
Confidence 1 24689999999999999999989999999976 66666655444433 4899
Q ss_pred EcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce
Q 011368 378 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 443 (487)
Q Consensus 378 ~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~ 443 (487)
++|.|..|+.|+.|+.+..+|+.-.....+++..|...++.++|.+. +.++++|+.|+.
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-------yPLfas~sdDgt 673 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-------YPLFASGSDDGT 673 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-------cceeeeecCCCc
Confidence 99999999999999999999998776666666666666666665542 333555555554
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=175.72 Aligned_cols=249 Identities=17% Similarity=0.230 Sum_probs=187.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.++|+|+.|...|.++++|+.|..|+||..++..+ +.++.||+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~---------------------------lAs~rGhs------ 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC---------------------------LASCRGHS------ 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhh---------------------------hccCCCCc------
Confidence 567999999999999999999999999999999888765 58899999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+.|+.++. +.+..++++++.|..|++|.+..+....+
T Consensus 233 ------~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv----------------------------------- 269 (1113)
T KOG0644|consen 233 ------GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV----------------------------------- 269 (1113)
T ss_pred ------cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH-----------------------------------
Confidence 88999998 46677889999999999999999876544
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~ 266 (487)
+.+|++.|++++|+|-. .++.||++++||.+-.- .++ .|..+.. ...-+.++.|...+
T Consensus 270 ------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~---~~y--~prp~~~~~~~~~~s~~~~~~~- 328 (1113)
T KOG0644|consen 270 ------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEP---RIY--VPRPLKFTEKDLVDSILFENNG- 328 (1113)
T ss_pred ------------HhccccceeeeccCccc---cCCCCCceEeccccccc---ccc--CCCCCCcccccceeeeeccccc-
Confidence 58999999999999865 33499999999998111 111 1222221 22456677787887
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEE-eCCeEEEEeCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DYMNLKLWDIRMD 344 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~-~d~~i~iwd~~~~ 344 (487)
.-+++++.|+.-..|.+..-. +. ...+.-+..+.+- .+.+++ .+..+.+|++.+
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~--------~~---------------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~- 384 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLA--------WR---------------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT- 384 (1113)
T ss_pred cccccccCCcccccchhhHhh--------hh---------------ccceEEEeccccccccceeeeeeeEeeeeeccc-
Confidence 889999999998888765421 11 1222223333232 344444 568899999986
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 412 (487)
+..+..+.+|...+ ..+.++| |.+...+++.||...|||+..|........+|
T Consensus 385 g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh 438 (1113)
T KOG0644|consen 385 GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH 438 (1113)
T ss_pred chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc
Confidence 88888888888754 4789999 55566799999999999999886655544443
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-17 Score=134.84 Aligned_cols=260 Identities=15% Similarity=0.166 Sum_probs=176.8
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.|.+-+++|.+++|++|+.+|.|.+..+...... ....|.-..+..+++|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----------------sa~~~gk~~iv~eqahd------------ 62 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----------------SAEPPGKLKIVPEQAHD------------ 62 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----------------ccCCCCCcceeeccccC------------
Confidence 4667789999999999999999999997654321 11222333456668898
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccce-eEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
++|+.++|+ +.+|++|+ ||.|+-|..+.... ...+ ..|..
T Consensus 63 gpiy~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~~K----------------------------------~lwe~ 103 (325)
T KOG0649|consen 63 GPIYYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLATK----------------------------------RLWEV 103 (325)
T ss_pred CCeeeeeee----hhheeecc-CceEEEeeehhhhhhccch----------------------------------hhhhh
Confidence 999999994 34566654 59999998875432 1110 00111
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
..+.+.- ...-..|+++...|..+-++.+ .|+.++-||+++ ++..+ ++.+|++.|.++.--... ..+++
T Consensus 104 ~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~r-------~~rGHtDYvH~vv~R~~~-~qils 173 (325)
T KOG0649|consen 104 KIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQR-------EYRGHTDYVHSVVGRNAN-GQILS 173 (325)
T ss_pred cCccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEEEE-------EEcCCcceeeeeeecccC-cceee
Confidence 1111110 1223568999999876666666 999999999994 44443 468999999999985444 68999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCcccccccc-ccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 350 (487)
|++||++|+||+++++.. +.++. ...++.+..| ..+|.+++.+ ..+|++|....+.+|.++. .++...
T Consensus 174 G~EDGtvRvWd~kt~k~v----~~ie~----yk~~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhLrs-se~t~v 242 (325)
T KOG0649|consen 174 GAEDGTVRVWDTKTQKHV----SMIEP----YKNPNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHLRS-SESTCV 242 (325)
T ss_pred cCCCccEEEEecccccee----EEecc----ccChhhcCcccCceeEEEecc--CceEEecCCCceeEEeccC-CCceEE
Confidence 999999999999998754 44333 1111222222 2456666655 5699999888999999997 666666
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+...... ..+.|. ...+++++..+.+.-|.+.
T Consensus 243 fpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 243 FPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred Eecccce----------------eEeeee--cceEEEeccccceeeeeec
Confidence 6543321 256675 3467778888899999886
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=1e-18 Score=144.49 Aligned_cols=271 Identities=17% Similarity=0.192 Sum_probs=177.6
Q ss_pred ccccCcEEEEEEcCCC-CEEEEEecC-------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec-C
Q 011368 29 LQDVDIVSAIEFDKTG-DYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-S 99 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~-~~l~~g~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 99 (487)
..|.+.|+.++-+|-. +.|+++..+ ..+.||.+...... ......+.+..+. .
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------------S~~~tlE~v~~Ldte 121 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------------SNSSTLECVASLDTE 121 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------------------cccchhhHhhcCCHH
Confidence 3467889999999955 566666432 24679998654321 1111222222232 1
Q ss_pred CCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccccee-EeeecCCCCceeeeeccccccccccccC
Q 011368 100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (487)
Q Consensus 100 h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (487)
+- +.|.||.|. |++..+++-. |..|.+|++..+..+ .......
T Consensus 122 av------------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------- 165 (370)
T KOG1007|consen 122 AV------------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------- 165 (370)
T ss_pred Hh------------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchheeecccc---------------------
Confidence 22 689999996 4677777765 889999999887542 1110000
Q ss_pred CCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368 179 PPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 256 (487)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 256 (487)
-.++....++-+|+| +++.+++..|+++..||+++..+...+ -.+|...|
T Consensus 166 ---------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI-------~dAHgq~v 217 (370)
T KOG1007|consen 166 ---------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI-------EDAHGQRV 217 (370)
T ss_pred ---------------------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch-------hhhhccee
Confidence 134667788889998 789999999999999999966654433 25788889
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE-eCC
Q 011368 257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-DYM 334 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~-~d~ 334 (487)
..+.|+|+...+|++++.||.|+|||.+..+.. ++.+ .+|..+|+++.|+|.-. +|++| +|.
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el-------------~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQEL-------------PGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCcc---cccc-------------CCCceEEEEEEecCccceEEEecCCCc
Confidence 999999998678999999999999999986532 2333 34688999999999654 55565 579
Q ss_pred eEEEEeCCCCCc-eeee-------eecccc--cccccc-----cc-cCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEE
Q 011368 335 NLKLWDIRMDST-PVAT-------FKIHEH--LRPKLC-----DL-YNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIF 397 (487)
Q Consensus 335 ~i~iwd~~~~~~-~~~~-------~~~~~~--~~~~~~-----~~-~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iw 397 (487)
.|.+|....-.. +... ...+.. ....+. .+ -++|++ .+++||.- .-.+|+-++||.+.|=
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV---Y~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV---YALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce---EEEeeccCCCeeEEEeccCceEEee
Confidence 999997643110 0000 000000 000000 11 124455 49999974 4457788999999887
Q ss_pred EeC
Q 011368 398 SHG 400 (487)
Q Consensus 398 d~~ 400 (487)
.+.
T Consensus 359 ~V~ 361 (370)
T KOG1007|consen 359 SVP 361 (370)
T ss_pred cCC
Confidence 665
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.5e-18 Score=149.49 Aligned_cols=213 Identities=13% Similarity=0.133 Sum_probs=162.5
Q ss_pred cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.-+|+.+|..++|+| +...||+|+.|-+|.||++..+-.. .+..+++..|.||.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~----- 131 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ----- 131 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc-----
Confidence 456999999999999 5578999999999999998766442 33446788999999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|.-|+|+|.. .+.|++++.|.+|.+||+.+++....
T Consensus 132 -------rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~---------------------------------- 169 (472)
T KOG0303|consen 132 -------RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALIT---------------------------------- 169 (472)
T ss_pred -------eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeee----------------------------------
Confidence 899999999854 56899999999999999999875433
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC-cEEEEEEecC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-VITSAEFHPI 264 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~ 264 (487)
..|.+.|++++|+.||.+|+++ .|+.|++||.+++. .+.. -.+|.+ ....+.|-.+
T Consensus 170 --------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e-------~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 170 --------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSE-------GVAHEGAKPARAIFLAS 227 (472)
T ss_pred --------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-Eeee-------cccccCCCcceeEEecc
Confidence 3499999999999999999998 99999999999544 3321 234543 3456778888
Q ss_pred CCCEEEEEe---CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE--eCCeEEEE
Q 011368 265 YCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKLW 339 (487)
Q Consensus 265 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~--~d~~i~iw 339 (487)
| .++.+|- .++.+-+||..+-+... -...+.. .+.|.---|.+|...+..+ +|+.||.|
T Consensus 228 g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDt--------------SnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 228 G-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDT--------------SNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred C-ceeeeccccccccceeccCcccccCcc-eeEEecc--------------CCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 8 7555543 37889999987744321 1122333 4567777788998877654 57999999
Q ss_pred eCCCCC
Q 011368 340 DIRMDS 345 (487)
Q Consensus 340 d~~~~~ 345 (487)
.+..+.
T Consensus 292 Eit~d~ 297 (472)
T KOG0303|consen 292 EITNEP 297 (472)
T ss_pred EecCCC
Confidence 997633
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3.1e-16 Score=151.47 Aligned_cols=324 Identities=21% Similarity=0.346 Sum_probs=224.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...+.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~----- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD----- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence 456889999999999999999999999999999876631 2344555330
Q ss_pred cccccccceeEEEEEecCCCc-EEEEEeC-CCcEEEEEccc-cceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~-~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..+..+.+. .+++. .++..+. |+.+.+|+... ......
T Consensus 110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------------------------- 150 (466)
T COG2319 110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT-------------------------------- 150 (466)
T ss_pred ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEE--------------------------------
Confidence 257777775 56666 4555444 99999999987 332222
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
+..|...|..++|+|+++.++++ . |+.+++|++.. ..... .+.+|...|.+++|+
T Consensus 151 ---------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~v~~~~~~ 207 (466)
T COG2319 151 ---------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLS-------TLAGHTDPVSSLAFS 207 (466)
T ss_pred ---------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEE-------eeccCCCceEEEEEc
Confidence 37899999999999999988888 5 99999999995 33333 245688999999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEEccCCccccccce-eecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEE
Q 011368 263 PIYCN-LLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 339 (487)
Q Consensus 263 p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iw 339 (487)
|++ . .+++++.|+.|++||...+... . .+.. |.... ...|+|++.++++++ ++.+++|
T Consensus 208 ~~~-~~~~~~~~~d~~i~~wd~~~~~~~----~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~ 268 (466)
T COG2319 208 PDG-GLLIASGSSDGTIRLWDLSTGKLL----RSTLSG-------------HSDSV-VSSFSPDGSLLASGSSDGTIRLW 268 (466)
T ss_pred CCc-ceEEEEecCCCcEEEEECCCCcEE----eeecCC-------------CCcce-eEeECCCCCEEEEecCCCcEEEe
Confidence 998 6 5555589999999988855433 2 3444 23443 228999998887664 6999999
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEE-eccCCcccc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV-EAGKNENRK 418 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~ 418 (487)
+++.....+..+..|...+ .++.|+|++..+++++.|+.+.+|+..+........ ..|...+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
T COG2319 269 DLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333 (466)
T ss_pred eecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEE
Confidence 9986443244444443322 588999988898889999999999888774433332 477777888
Q ss_pred ceEeeCCccccccccceeee-cccce-ecCCCCCcc-ccccccCCCeEEEEEcCCCCEEEE-ec-CCeEEEEe
Q 011368 419 PILQAAPRARRSSLSNLTRG-LYRQA-HENSSSGHH-ELSYNLSSKLLHLAWHPTTNLIAC-AN-GNSLFFHY 486 (487)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~g-~~~~~-~~w~~~~~~-~~~~~~~~~v~~~~~spd~~~la~-~s-~~~~~i~~ 486 (487)
+.+ . .++.. +..+ ..++. .+|...... .........+..+.+++ ...++. +. ...+.+|.
T Consensus 334 ~~~-~-~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 334 LSF-S-PDGSL-----LVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred EEE-C-CCCCE-----EEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 888 5 33222 3444 56655 668554333 11122222388999999 633333 33 44577775
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=159.56 Aligned_cols=264 Identities=13% Similarity=0.139 Sum_probs=193.7
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|+.++| .|||..|+.+..+ .+.+||..+|.....
T Consensus 13 hci~d~af--kPDGsqL~lAAg~-rlliyD~ndG~llqt----------------------------------------- 48 (1081)
T KOG1538|consen 13 HCINDIAF--KPDGTQLILAAGS-RLLVYDTSDGTLLQP----------------------------------------- 48 (1081)
T ss_pred cchheeEE--CCCCceEEEecCC-EEEEEeCCCcccccc-----------------------------------------
Confidence 35899999 6899888877654 689999999876654
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+.+|.+.|+|++|+.||+.+++| .|..|.+|.-+-.+. ++ ..|.+.|.|+.|+|-. ..|+++
T Consensus 49 ------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-Lk---------YSH~D~IQCMsFNP~~-h~LasC 111 (1081)
T KOG1538|consen 49 ------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LK---------YSHNDAIQCMSFNPIT-HQLASC 111 (1081)
T ss_pred ------cccccceEEEEEEccCCceeccCCCceeEEEecccccce-ee---------eccCCeeeEeecCchH-HHhhhc
Confidence 48999999999999999999999 999999998774432 22 3699999999999998 888888
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~ 351 (487)
+-. ..-+|...+.... .... ...+.+++|..||++++.|. +|+|.+-+-. +++...+
T Consensus 112 sLs-dFglWS~~qK~V~-----K~ks--------------s~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I 169 (1081)
T KOG1538|consen 112 SLS-DFGLWSPEQKSVS-----KHKS--------------SSRIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKI 169 (1081)
T ss_pred chh-hccccChhhhhHH-----hhhh--------------heeEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEE
Confidence 754 3578987765432 1111 35789999999999999994 6999998654 3333333
Q ss_pred ecccccccccccccCCCCcceeeEEEEcCCC-----CEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-----LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
..+.+.. .. |++++|+|.. ..+++.....++.+|.+... .....-.-..+| -++.+.+ +
T Consensus 170 ~Rpgg~N---------sp---iwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP-~CisYf~--N 233 (1081)
T KOG1538|consen 170 ERPGGSN---------SP---IWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDP-CCISYFT--N 233 (1081)
T ss_pred eCCCCCC---------CC---ceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCc-hhheecc--C
Confidence 3322211 12 2699999953 36788888888888887632 211110001111 1333333 7
Q ss_pred cccccccceeeecccce-ecC-CCCCccccccccCCCeEEEEEcCCCCEEEEecCCe
Q 011368 427 ARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 481 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~-~~w-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~ 481 (487)
|.+ +..|+.|+. +++ ..+-.+.+...++..|..++.+|.+..+++|+.|+
T Consensus 234 GEy-----~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 234 GEY-----ILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred CcE-----EEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 777 888888888 888 66666777778999999999999999999999776
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=141.30 Aligned_cols=296 Identities=12% Similarity=0.122 Sum_probs=193.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC-CCccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLK 108 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~ 108 (487)
.|...|+|+.|-.+++ |.+|..-|.|.+|.+.+.... ..+++ |.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------~~~r~~g~------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------PLIRLFGR------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc---------------------------hhhhhhcc-------
Confidence 4788999999998876 889999999999999887642 44553 33
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCC-ceeeeeccccccc---cccccCCCCcce
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP-FVSSENTLLAEKN---FMNEHNPPSFAH 184 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~ 184 (487)
..|+.+.-. |+ ..+.+-+.|..+.+|++..+....+.....+. ..|-+++...... .+.........
T Consensus 57 -----~~it~lq~~--p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde- 127 (323)
T KOG0322|consen 57 -----LFITNLQSI--PN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE- 127 (323)
T ss_pred -----ceeeceeec--CC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-
Confidence 667878764 33 57889999999999999987666554322221 1112222221111 11111111111
Q ss_pred eeeeeeeccceeee---ecccCCCceeEEEeCC-CCC--EEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCc
Q 011368 185 GYHLEWTENMATKV---YPHAHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEV 255 (487)
Q Consensus 185 ~~~~~~~~~~~~~~---~~~~~~~~v~~i~~s~-~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~ 255 (487)
.............. ...+..+.+.|..+.. ++. ++++| .+|.+.+||+.++.+.+..-... ......|..+
T Consensus 128 ~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qp 207 (323)
T KOG0322|consen 128 THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQP 207 (323)
T ss_pred hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCc
Confidence 00000000001110 0124456677777533 233 34557 99999999999764433221000 0123568889
Q ss_pred EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CC
Q 011368 256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 334 (487)
Q Consensus 256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~ 334 (487)
|.++.+.+.- ..=++|+.+..+..|.+.......+....... ....|..+.+-||++.+|+++ |+
T Consensus 208 vlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-------------knpGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 208 VLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL-------------KNPGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred ceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe-------------cCCCccceEEccCCcEEeecccCC
Confidence 9999999865 66678888888999988754211111111111 125688999999999999976 79
Q ss_pred eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
.||||..++ .+++..++.|...+ .+++|+||...+|+++.|++|.+|++
T Consensus 274 RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence 999999998 99999999999755 69999999999999999999999986
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=3.1e-18 Score=148.24 Aligned_cols=281 Identities=19% Similarity=0.167 Sum_probs=182.8
Q ss_pred cceeEEEEEecCCCc-EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
.+|..+.|.+ ++. .+++|+.|..|++|.+..+....-. . .+
T Consensus 14 ~pv~s~dfq~--n~~~~laT~G~D~~iriW~v~r~~~~~~~-----~---~V---------------------------- 55 (434)
T KOG1009|consen 14 EPVYSVDFQK--NSLNKLATAGGDKDIRIWKVNRSEPGGGD-----M---KV---------------------------- 55 (434)
T ss_pred CceEEEEecc--CcccceecccCccceeeeeeeecCCCCCc-----e---eE----------------------------
Confidence 6799999963 443 8999999999999999765422100 0 00
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC------C------ceeEEeecCCCCCCCCCCcEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------D------QCFNIVDMKPSNMDDLTEVITSA 259 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~------~------~~~~~~~~~~~~~~~~~~~v~~v 259 (487)
.....+..|...|+++.|+|+|.++|+| ++|.|.+|..... . +.+.+ ...+.+|...|+.+
T Consensus 56 --~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v----~k~lr~h~~diydL 129 (434)
T KOG1009|consen 56 --EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV----KKVLRGHRDDIYDL 129 (434)
T ss_pred --EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEE----EEEecccccchhhh
Confidence 0011158999999999999999999999 9999999977610 0 00111 12356799999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEE
Q 011368 260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL 338 (487)
Q Consensus 260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~i 338 (487)
+|+|++ .++++++.|..+++||+..+.+. ..+.. |...+..++|.|-++++++- .|...+.
T Consensus 130 ~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~~~~d-------------h~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 130 AWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----AILDD-------------HEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred hccCCC-ceeeeeeccceEEEEEeccceeE----eeccc-------------cccccceeecchhhhhhhhhccCcccce
Confidence 999999 99999999999999999999765 55555 57899999999999999984 4566677
Q ss_pred EeCCCCCceeeeee-----c--ccccccccccccCCCCcce-eeEEEEcCCCCEEEEEcC----C-----CcEEEEEeCC
Q 011368 339 WDIRMDSTPVATFK-----I--HEHLRPKLCDLYNNDSIFD-KFECSVSGDGLHFATGSY----S-----NLLRIFSHGV 401 (487)
Q Consensus 339 wd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~~s~d~~~l~sg~~----d-----g~i~iwd~~~ 401 (487)
+++.. .+.+.... . ....-.....+++.+.... .+.++|+|||.+|++... + +..++++-..
T Consensus 192 ~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~ 270 (434)
T KOG1009|consen 192 FSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD 270 (434)
T ss_pred eeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc
Confidence 66654 22221111 0 0011111222444443322 157999999999987643 1 2345555554
Q ss_pred CCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCC-CeEEEEEcCCCCEEEEecCC
Q 011368 402 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS-KLLHLAWHPTTNLIACANGN 480 (487)
Q Consensus 402 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~-~v~~~~~spd~~~la~~s~~ 480 (487)
.+.....+.+...+...+.++|. ...+..... +. +---|.+-.+|+|+.|
T Consensus 271 l~rP~~~lp~~~k~~lavr~~pV---------------------------y~elrp~~~~~~--~~~lpyrlvfaiAt~~ 321 (434)
T KOG1009|consen 271 LKRPAARLPSPKKPALAVRFSPV---------------------------YYELRPLSSEKF--LFVLPYRLVFAIATKN 321 (434)
T ss_pred ccCceeecCCCCcceEEEEeeee---------------------------EEEecccccccc--ccccccceEEEEeecc
Confidence 44444555555555555555552 001111100 00 1122677788999999
Q ss_pred eEEEEe
Q 011368 481 SLFFHY 486 (487)
Q Consensus 481 ~~~i~~ 486 (487)
.+|||.
T Consensus 322 svyvyd 327 (434)
T KOG1009|consen 322 SVYVYD 327 (434)
T ss_pred eEEEec
Confidence 999985
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.5e-18 Score=146.47 Aligned_cols=301 Identities=15% Similarity=0.155 Sum_probs=205.3
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
.+.+.+|. +.|+++.| +.++++|++|+.|..+++|++..--..+.
T Consensus 49 qKD~~~H~------------GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------------- 93 (609)
T KOG4227|consen 49 QKDVREHT------------GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT--------------------- 93 (609)
T ss_pred hhhhhhhc------------cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC---------------------
Confidence 34566777 99999999 57899999999999999999975432221
Q ss_pred ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 252 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 252 (487)
.+++...-..|...|.|++|....+++++| .+++|.+.|+++.. .+-+. .-...
T Consensus 94 -------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q-si~V~-----~~~~~ 148 (609)
T KOG4227|consen 94 -------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ-SIYVA-----NENNN 148 (609)
T ss_pred -------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce-eeeee-----cccCc
Confidence 112222224677899999999999999999 99999999999544 33221 11223
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEE
Q 011368 253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSR 331 (487)
Q Consensus 253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~ 331 (487)
.+.|+.+..+|.. +.|++.+.++.|.+||.+...... ..+-. .........+.|+|...- |++.
T Consensus 149 ~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-----------AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 149 RGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-----------ANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred ccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-----------cCCCccceeeeecCCCceeEEec
Confidence 3589999999998 999999999999999998764221 11111 011346788999997664 4455
Q ss_pred eC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368 332 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 410 (487)
Q Consensus 332 ~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 410 (487)
+. +-+.+||.+.+..++....+....... ..++ .++-|+|+|..+++--....-.+||+-+....+..+.
T Consensus 214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-----~~~~----M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 214 SETGGPNVFDRRMQARPVYQRSMFKGLPQE-----NTEW----MGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred cccCCCCceeeccccchHHhhhccccCccc-----chhh----hheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 54 899999999866666554443322100 0001 3789999999998877777777888886533333332
Q ss_pred cc------CCccccceEeeCCccccccccceeeecccce-ecCCCC------C-------------------cccccccc
Q 011368 411 AG------KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS------G-------------------HHELSYNL 458 (487)
Q Consensus 411 ~~------~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~------~-------------------~~~~~~~~ 458 (487)
.. ...+.++.|.. .+. +++|+.+-. ++|+.. + ....+.+|
T Consensus 285 ~N~~GY~N~~T~KS~~F~~---D~~-----v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH 356 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFID---DYT-----VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH 356 (609)
T ss_pred CCCCcceeeeeeeeeeeec---cee-----eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc
Confidence 11 12344555653 233 788888877 999221 1 11134467
Q ss_pred CCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368 459 SSKLLHLAWHPTTNLIACAN-GNSLFFHY 486 (487)
Q Consensus 459 ~~~v~~~~~spd~~~la~~s-~~~~~i~~ 486 (487)
..-++.|.|+|-..+|++.+ .+.+.||+
T Consensus 357 RSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 357 RSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccccceeecCCcceEeccchhhheeccc
Confidence 77889999999988888666 67788996
No 182
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=2.4e-18 Score=151.06 Aligned_cols=244 Identities=16% Similarity=0.173 Sum_probs=178.9
Q ss_pred ccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368 201 HAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 277 (487)
.-+..+|++++|+|.. +++++| ..|.|-+||+.++++...-+ ..+..|..+|.++.|+|.....+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 5678999999999954 577788 89999999996333221110 1256799999999999998889999999999
Q ss_pred EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccc
Q 011368 278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH 356 (487)
Q Consensus 278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~ 356 (487)
|++-|++....- ..+.. ......+..+.|+.+...++.+++ |...+||+++++.....+..|..
T Consensus 259 iR~~D~~~~i~e----~v~s~-----------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 259 IRLQDFEGNISE----EVLSL-----------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred eeeeeecchhhH----HHhhc-----------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 999999986421 11111 011357788899988888888876 99999999998887888888887
Q ss_pred cccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCce---eEEEeccCCccccceEeeCCccccccc
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSL 432 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~ 432 (487)
.+ ++++++| ...+|||+|.|++++|||++.-... ....-.|...|.+..|+|. .+.
T Consensus 324 KI---------------~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-~gt---- 383 (498)
T KOG4328|consen 324 KI---------------TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-GGT---- 383 (498)
T ss_pred cc---------------ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-CCc----
Confidence 54 6999999 4567999999999999999874322 3556689999999999996 333
Q ss_pred cceeeecccce-ecCCCC---Ccc--ccccccC----CC--eEEEEEcCCCCEEEEecC-CeEEEE
Q 011368 433 SNLTRGLYRQA-HENSSS---GHH--ELSYNLS----SK--LLHLAWHPTTNLIACANG-NSLFFH 485 (487)
Q Consensus 433 ~~l~~g~~~~~-~~w~~~---~~~--~~~~~~~----~~--v~~~~~spd~~~la~~s~-~~~~i~ 485 (487)
|++-+.|.. ++|+.. ... .....|. .. ....+|.||.++|++|.. +.|=||
T Consensus 384 --l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 384 --LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred --eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEE
Confidence 677777777 999552 111 1111222 22 235589999999999883 234444
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=3.3e-16 Score=134.32 Aligned_cols=240 Identities=14% Similarity=0.179 Sum_probs=171.4
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...++.+.|+.+...|..|+.|| .++|+.+....- .......
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---------------------------~~~~~~~---------- 46 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---------------------------FSKDTEG---------- 46 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---------------------------hcccCCC----------
Confidence 34578888999999999999987 678886543210 0011111
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|-.+-| + ..++|..+.+. .+++.++..+..++.
T Consensus 47 --~~IvEmLF--S--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe------------------------------------- 83 (391)
T KOG2110|consen 47 --VSIVEMLF--S--SSLVAIVSIKQPRKLKVVHFKKKTTICE------------------------------------- 83 (391)
T ss_pred --eEEEEeec--c--cceeEEEecCCCceEEEEEcccCceEEE-------------------------------------
Confidence 34555556 3 34677666544 488888877665543
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
......|.++.++ -+.|+++-...|+|||++.. +.+..+ ...+.+...+.+++.++.+ .++
T Consensus 84 -----------~~fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~M-klLhTI----~t~~~n~~gl~AlS~n~~n-~yl 144 (391)
T KOG2110|consen 84 -----------IFFPTSILAVRMN--RKRLVVCLEESIYIYDIKDM-KLLHTI----ETTPPNPKGLCALSPNNAN-CYL 144 (391)
T ss_pred -----------EecCCceEEEEEc--cceEEEEEcccEEEEecccc-eeehhh----hccCCCccceEeeccCCCC-ceE
Confidence 2235668888887 46777773334999999944 444433 1233455667888888777 677
Q ss_pred EEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-Ce-EEEEeCCCCC
Q 011368 270 AYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN-LKLWDIRMDS 345 (487)
Q Consensus 270 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~-i~iwd~~~~~ 345 (487)
+.-+ ..|.|.|||..+-+.. ..+.. |.+.+.+++|+++|.+||++++ |+ |||+.+.. +
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v----~~I~a-------------H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G 206 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPV----NTINA-------------HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-G 206 (391)
T ss_pred EecCCCCCceEEEEEcccceee----eEEEe-------------cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-c
Confidence 7644 3689999999885543 56666 5899999999999999999987 55 79999986 8
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
..+..|+.....+ .+.+++|+|++++|++.|..++|+||.++..
T Consensus 207 ~kl~eFRRG~~~~-------------~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 207 QKLYEFRRGTYPV-------------SIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred cEeeeeeCCceee-------------EEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 8888887655443 2359999999999999999999999999865
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=3e-16 Score=145.39 Aligned_cols=214 Identities=13% Similarity=0.124 Sum_probs=133.5
Q ss_pred cceeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-cceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+....+++ +|++++|++++ .++.|.+|++.. +.+.....
T Consensus 35 ~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------------------------------------- 75 (330)
T PRK11028 35 GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------------------------------------- 75 (330)
T ss_pred CCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeee-------------------------------------
Confidence 44677888 57888887664 688999999973 33322110
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
.........++++|++++++++ .++.|.+|+++..+.....+ ..+. +.....+++++|++ +++
T Consensus 76 ---------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~----~~~~-~~~~~~~~~~~p~g-~~l 140 (330)
T PRK11028 76 ---------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI----QIIE-GLEGCHSANIDPDN-RTL 140 (330)
T ss_pred ---------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce----eecc-CCCcccEeEeCCCC-CEE
Confidence 1112345689999999998887 68999999997443322111 0111 22346778999999 777
Q ss_pred EEE-eCCCeEEEEEccCCcccccc-ceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC-
Q 011368 270 AYS-SSRGFVRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD- 344 (487)
Q Consensus 270 ~~~-~~dg~i~iwd~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~- 344 (487)
+++ ..++.|.+||+.+...+... ...... .. ......++|+|+|++++++. ++.|.+|++...
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~----------~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~ 208 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT----------VE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH 208 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceec----------CC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 554 45799999999863322100 000000 00 13457899999999998774 499999999731
Q ss_pred Cc--eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCC
Q 011368 345 ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 402 (487)
Q Consensus 345 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~ 402 (487)
+. .+..+....... .. . .....+.++|++++|+++.. ++.|.+|++...
T Consensus 209 ~~~~~~~~~~~~p~~~------~~--~-~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 209 GEIECVQTLDMMPADF------SD--T-RWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCEEEEEEEecCCCcC------CC--C-ccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 22 222222111100 00 0 01136889999999998864 689999999754
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=9e-18 Score=150.33 Aligned_cols=206 Identities=14% Similarity=0.178 Sum_probs=159.1
Q ss_pred CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee
Q 011368 217 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 295 (487)
Q Consensus 217 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 295 (487)
..|+.+ .||.+.|.+-. ++.- ....+|.+.+.+-.|+|+| .-|+++++||.|++|.- +|.+. .+
T Consensus 76 d~~~i~s~DGkf~il~k~--~rVE-------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLR----St 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS--ARVE-------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLR----ST 140 (737)
T ss_pred ceEEEEcCCceEEEeccc--chhh-------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHH----HH
Confidence 355555 99999887655 2221 2467899999999999999 99999999999999974 44322 11
Q ss_pred ecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeE
Q 011368 296 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 375 (487)
Q Consensus 296 ~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
+.. ...+|.|++|.|++.-++-+..+.+.|=.+.. ...+...++|.+.+ .+
T Consensus 141 l~Q-------------~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGii---------------L~ 191 (737)
T KOG1524|consen 141 VVQ-------------NEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLV---------------LS 191 (737)
T ss_pred Hhh-------------cCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEE---------------EE
Confidence 111 14689999999999888877667888888875 66677889999876 69
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccc
Q 011368 376 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS 455 (487)
Q Consensus 376 ~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~ 455 (487)
+.|++.+..|++|++|-..+|||.. +..+..-..|..++++++|.|. .. ++.|+.+..++ .
T Consensus 192 ~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd---~~-----~~v~S~nt~R~---------~ 252 (737)
T KOG1524|consen 192 LSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE---KD-----YLLWSYNTARF---------S 252 (737)
T ss_pred eecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc---cc-----eeeeeeeeeee---------c
Confidence 9999999999999999999999975 3467788899999999999995 32 45555443321 1
Q ss_pred cccCCCeEEEEEcCCCCEEEEecCCeEEEE
Q 011368 456 YNLSSKLLHLAWHPTTNLIACANGNSLFFH 485 (487)
Q Consensus 456 ~~~~~~v~~~~~spd~~~la~~s~~~~~i~ 485 (487)
....+.|..++||+||..+++|+..+..++
T Consensus 253 ~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 253 SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 233458999999999999999998875554
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=6e-17 Score=153.30 Aligned_cols=276 Identities=16% Similarity=0.173 Sum_probs=179.7
Q ss_pred CccccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 26 DEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
...+.-...|+|++|+|.. .+||.|..+|+|.+||+..+...+ ....-.....|.
T Consensus 236 e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------~s~ls~~~~sh~--- 291 (555)
T KOG1587|consen 236 ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------PSGLSALEVSHS--- 291 (555)
T ss_pred eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------CcccccccccCC---
Confidence 3344446789999999954 778888899999999998775420 011112233455
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
.++..+.|..+..+.-|++++.||.|..|+++.-....... ....
T Consensus 292 ---------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~-~~~~------------------------- 336 (555)
T KOG1587|consen 292 ---------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL-LLES------------------------- 336 (555)
T ss_pred ---------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhc-cccc-------------------------
Confidence 89999999876656669999999999999776432210000 0000
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
...... -......+++++|.+ +-..++.| .+|.|.-=+....................|.+.|+++.++
T Consensus 337 --------~~~~~~-~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n 407 (555)
T KOG1587|consen 337 --------KKHKGQ-QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN 407 (555)
T ss_pred --------cccccc-ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecC
Confidence 000000 013345688999977 45677788 9999876333311111101101112456788999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcc-CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEEE
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKLW 339 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~iw 339 (487)
|-+.+.+++++ |-+++||... ....+ ..+.. +...|++++|||-..-+++ ++ +|.|.+|
T Consensus 408 PF~~k~fls~g-DW~vriWs~~~~~~Pl----~~~~~-------------~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 408 PFYPKNFLSVG-DWTVRIWSEDVIASPL----LSLDS-------------SPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred CCccceeeeec-cceeEeccccCCCCcc----hhhhh-------------ccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 99966666666 9999999877 32222 33333 2456999999998765554 44 5999999
Q ss_pred eCCCC-CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 340 DIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 340 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
|+... ..++...+...... +.+.|+++|+.|++|...|.+++|++...
T Consensus 470 DLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhccccCCccccccccccc---------------ceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 99742 23444444332211 47889999999999999999999999743
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=1.6e-16 Score=155.60 Aligned_cols=295 Identities=17% Similarity=0.231 Sum_probs=184.6
Q ss_pred ccccchhhhhhhhcCCCCCCccccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccc
Q 011368 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (487)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (487)
..++++.|+.....- .....|+..|..++.+++. .++++|+.||+|++|+...... .+
T Consensus 1027 ~~~p~~gW~p~G~lV----AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~-------------~~---- 1085 (1431)
T KOG1240|consen 1027 VGSPPPGWNPRGILV----AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG-------------EG---- 1085 (1431)
T ss_pred cCCCCCCCCccceEe----ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhc-------------Cc----
Confidence 344555665553322 2456678889999988765 9999999999999999764322 10
Q ss_pred cCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeee
Q 011368 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (487)
Q Consensus 86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (487)
..++...++.--. .++.++..+ +.+..+|.++.||.|++.+++........
T Consensus 1086 ---~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~------------ 1136 (1431)
T KOG1240|consen 1086 ---GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRV------------ 1136 (1431)
T ss_pred ---ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccce------------
Confidence 1333333333223 678888886 56789999999999999999763211110
Q ss_pred ccccccccccccCCCCcceeeeeeeeccceeeeecccCCCce-eEEEeCC-CCC-EEEEe-cCCeEEEEEccCCCceeEE
Q 011368 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNI-NSISNNS-DCE-TFVSA-DDLRINLWNLEISDQCFNI 241 (487)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~s~-~~~-~l~s~-~d~~i~iwd~~~~~~~~~~ 241 (487)
..+.+..-....+.+ ..-++.. ... .++.+ ..+.|..||+++.......
T Consensus 1137 ---------------------------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1137 ---------------------------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred ---------------------------eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 001111101122223 3334433 233 66777 8999999999965443322
Q ss_pred eecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368 242 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 321 (487)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~ 321 (487)
+.+...+.|++++.+|.+ .+++.|+..|.+.+||+|-+..+ ..+.- .+..+++.+..
T Consensus 1190 ------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i----~sw~~------------P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1190 ------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI----LSWEH------------PARAPIRHVWL 1246 (1431)
T ss_pred ------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee----ecccC------------cccCCcceEEe
Confidence 233445779999999999 89999999999999999987654 33332 12356777766
Q ss_pred cC---CCCEEEEE-e-C-CeEEEEeCCCCCceeeeeecccccccccc-cccCC-----CCcceeeEEEEcCCCCEEEEEc
Q 011368 322 AN---DGQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLC-DLYNN-----DSIFDKFECSVSGDGLHFATGS 389 (487)
Q Consensus 322 s~---~~~~l~s~-~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~s~d~~~l~sg~ 389 (487)
+| .....+++ . . +.|.+|++.+ +.....+...... +.+. ....+ +.. .....++..-+..+.+|+
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~~Ps~~~~kp~~~-~~~~~~~~~~~~~~ltgg 1323 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYALPSNDARKPDSL-AGISCGVCEKNGFLLTGG 1323 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhhcccccCCCCCcc-cceeeecccCCceeeecC
Confidence 54 33455554 3 3 8999999987 5555555544211 1111 11111 111 112344444567899999
Q ss_pred CCCcEEEEEeCCCCc
Q 011368 390 YSNLLRIFSHGVGSA 404 (487)
Q Consensus 390 ~dg~i~iwd~~~~~~ 404 (487)
.|+.|+.||....+.
T Consensus 1324 sd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1324 SDMKIRKWDPTRPEI 1338 (1431)
T ss_pred CccceeeccCCCccc
Confidence 999999999987643
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=2.2e-16 Score=149.48 Aligned_cols=223 Identities=13% Similarity=0.132 Sum_probs=153.6
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.++.|+| -+..+++.|+.+|.|.+||+..+.....
T Consensus 243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~----------------------------------------- 280 (555)
T KOG1587|consen 243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPP----------------------------------------- 280 (555)
T ss_pred CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCC-----------------------------------------
Confidence 6799999997 4567888999999999999987754211
Q ss_pred ceeeeecccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC----CCCCCcEEEEEEecCCC
Q 011368 194 MATKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM----DDLTEVITSAEFHPIYC 266 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~v~~~p~~~ 266 (487)
.........|..+++.+.|..+. .-|+++ .||.|..|+++.-.............. ......+++++|.+..+
T Consensus 281 s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 281 SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence 01111136789999999996543 447777 999999998885443333221111110 01223578999999988
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-EEeCCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDYMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~d~~i~iwd~~~~~ 345 (487)
..+++|+++|.|.--+....+.-. ...++.| ..+..|.+.|.++.++|=+..++ ++.|.+++||.-....
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~~-------~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~ 431 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAP--EVSYKGH-------STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA 431 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccc--ccccccc-------ccccccCcceEeeecCCCccceeeeeccceeEeccccCCC
Confidence 999999999988774433322111 0122221 12345678999999999876444 5568999999987436
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~ 402 (487)
.++..+..+...+ ++++|||-. ..++++..||.|.|||+...
T Consensus 432 ~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 432 SPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred Ccchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 7777666655432 699999965 46778888999999999865
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=8.4e-17 Score=155.14 Aligned_cols=305 Identities=17% Similarity=0.245 Sum_probs=192.8
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
+-..+.|+|-...+++++..-.|+|||.+.++. +..|..+... .
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~---------------------------l~~F~n~~~~---------~ 1109 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL---------------------------LNGFDNGAFP---------D 1109 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCce---------------------------eccccCCCCC---------C
Confidence 466788999998999998677999999987754 2333333211 2
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc--eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
..|+.+.+....|..++++|+.||.|+||+--... ...+. ..|.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV----------------------------------Taw~ 1155 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV----------------------------------TAWS 1155 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeE----------------------------------Eeec
Confidence 67888998766677889999999999999643221 11110 0010
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEE-ecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVS-ADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
.-... +.+..+.=.-+.|.....+|++ |+-..|+|||......+..+ ..+....|+++.-+-.++++++
T Consensus 1156 ~Ls~~---~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di-------P~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1156 SLSDQ---LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI-------PYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred ccccc---CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec-------ccCCCccceeecccccCCceEE
Confidence 00000 0111111134567665445555 58899999999954433322 1234455777765533339999
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccc--eeEEEEcCCCCE-EEEEe-CCeEEEEeCCCC-C
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQH-LLSRD-YMNLKLWDIRMD-S 345 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~--v~~v~~s~~~~~-l~s~~-d~~i~iwd~~~~-~ 345 (487)
+|..||.|++||.+.... ...+..+..| +.. |..+.+.++|-- |++|+ +|.|++||++.. .
T Consensus 1226 AGfaDGsvRvyD~R~a~~-ds~v~~~R~h-------------~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPP-DSLVCVYREH-------------NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred EeecCCceEEeecccCCc-cccceeeccc-------------CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 999999999999987542 2233455554 444 888999887654 77775 699999999972 1
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 425 (487)
.....+..|...- + +.+++..++....+|+|+. +.|+||++... .+..++.+ ..|.
T Consensus 1292 e~~~~iv~~~~yG----------s--~lTal~VH~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n------~~F~--- 1347 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYG----------S--ALTALTVHEHAPIIASGSA-QLIKIYSLSGE--QLNIIKYN------PGFM--- 1347 (1387)
T ss_pred cccceeeeccccC----------c--cceeeeeccCCCeeeecCc-ceEEEEecChh--hhcccccC------cccc---
Confidence 1112222222100 0 1268999999999999999 99999999743 22222211 0111
Q ss_pred ccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 426 RARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 426 ~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
| .-...+.+++|||-.-++|+|+.|+ +-||+
T Consensus 1348 ------------~------------------q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1348 ------------G------------------QRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ------------c------------------CcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 0 1112557999999999999998665 77775
No 190
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=2.6e-17 Score=138.42 Aligned_cols=294 Identities=15% Similarity=0.194 Sum_probs=212.3
Q ss_pred eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
.....| +|||..|++-+.|..+++|++.......-....... ....
T Consensus 52 ~kgckW--SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~--------------------------------~~~~ 97 (406)
T KOG2919|consen 52 LKGCKW--SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNF--------------------------------SKHL 97 (406)
T ss_pred hcccee--CCCCceEEeecccCeeeEEecChhhcccCCCCcccc--------------------------------ccce
Confidence 456789 689999999999999999998643211100000000 0000
Q ss_pred eeeecccCCCceeEEEe-------CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC---cEEEEEEecC
Q 011368 196 TKVYPHAHDFNINSISN-------NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---VITSAEFHPI 264 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~-------s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~p~ 264 (487)
.+-......|+..+| .|+..+++++ .+.-|++||.-+++.... + ....|.. ...+++|+|+
T Consensus 98 --~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraS-y-----~~ydh~de~taAhsL~Fs~D 169 (406)
T KOG2919|consen 98 --SYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRAS-Y-----RAYDHQDEYTAAHSLQFSPD 169 (406)
T ss_pred --eEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccc-h-----hhhhhHHhhhhheeEEecCC
Confidence 000223445667766 3678888888 999999999986543221 1 1122332 3468999999
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEeC-CeEEEEeC
Q 011368 265 YCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDI 341 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~d-~~i~iwd~ 341 (487)
| ..|++| ..+.|+++|+ |.|+.+........+ -.+..+-+.+++|+|-.. .++.|+. ..+-||.-
T Consensus 170 G-eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~----------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 170 G-EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG----------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred C-CeEeec-ccceEEEeeccCCCCCCcchhhhhcc----------cccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 9 777665 5678999999 666644322222221 012256789999999654 7888887 77778877
Q ss_pred CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCceeEEEeccCC-ccccc
Q 011368 342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKN-ENRKP 419 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~ 419 (487)
.. ..++..+.+|.+.+ +.++|.++|+.|.+|.. |-.|..||++.-+..+..|..|.+ ....+
T Consensus 238 ~~-~~pl~llggh~gGv---------------ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI 301 (406)
T KOG2919|consen 238 DG-RRPLQLLGGHGGGV---------------THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI 301 (406)
T ss_pred CC-CCceeeecccCCCe---------------eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE
Confidence 64 88999999999865 79999999999999984 679999999998888999999988 66677
Q ss_pred eEeeCCccccccccceeeecccce-ecCCC---CCccccccccCCCeEEEEEcCCCCEEEEecCCeEEE
Q 011368 420 ILQAAPRARRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 484 (487)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~---~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i 484 (487)
.|--.+++.+ |++|+.+|. ++|+. +........+...|+.++++|-=+++|+++...+|-
T Consensus 302 ~FDld~~~~~-----LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~ 365 (406)
T KOG2919|consen 302 LFDLDPKGEI-----LASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK 365 (406)
T ss_pred EEecCCCCce-----eeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence 7777788898 999999999 99944 334555667888999999999999999999876664
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=5.2e-17 Score=155.00 Aligned_cols=214 Identities=13% Similarity=0.137 Sum_probs=144.9
Q ss_pred cceeEEEEEecCCCcEEEEEeCC---CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+...+| +|+|+.|+.++.+ ..|++||+.+++...+..
T Consensus 204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------------------------------ 245 (429)
T PRK01742 204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS------------------------------------ 245 (429)
T ss_pred CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec------------------------------------
Confidence 77899999 6899999887643 469999998876433210
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEE--EccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.++ ...++|+|||+.|+.+ .++.+.|| |+. .+.... +..+...+..+.|+|+|
T Consensus 246 ---------~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~~~~~~~~~wSpDG- 303 (429)
T PRK01742 246 ---------FRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQ--------LTSGAGNNTEPSWSPDG- 303 (429)
T ss_pred ---------CCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEe--------eccCCCCcCCEEECCCC-
Confidence 1222 3468999999988875 57766665 554 233222 33455567889999999
Q ss_pred CEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 011368 267 NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~ 345 (487)
+.|+.++ .+|...||++....... ..+.. .. ....|+|||++|+..+...+.+||+.+ +
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~--------------~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g 363 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGGA---SLVGG--------------RG--YSAQISADGKTLVMINGDNVVKQDLTS-G 363 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCCe---EEecC--------------CC--CCccCCCCCCEEEEEcCCCEEEEECCC-C
Confidence 7666555 57888899876432110 11111 22 357899999999877555677799976 4
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC-CCceeEEEeccCCccccceEeeC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV-GSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
........... .++.|+|||++|+.++.++.+.+|++.+ .+.....+..|.+.+..++|+|.
T Consensus 364 ~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 364 STEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 43322221111 2688999999999999999888888642 23457778888888888888873
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.3e-15 Score=141.22 Aligned_cols=263 Identities=13% Similarity=0.106 Sum_probs=163.8
Q ss_pred cccccCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeC-CcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
.+.+......++++|++++|++++ .++.|.+|+++. +.. ....... ..
T Consensus 30 ~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-------------------------~~~~~~~-~~---- 79 (330)
T PRK11028 30 VVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-------------------------TFAAESP-LP---- 79 (330)
T ss_pred EEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------------------EEeeeec-CC----
Confidence 344445678899999999987765 578899999862 221 1111111 11
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
+....++| +|+++++++++ .++.|.+|++++.. ....
T Consensus 80 --------~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------------------------------- 118 (330)
T PRK11028 80 --------GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAP------------------------------- 118 (330)
T ss_pred --------CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCc-------------------------------
Confidence 34567888 67888888876 58899999996422 1110
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
... ..+.....+++++|++++++++ .++.|.+||+++.+...... ....... .......++|
T Consensus 119 ------------~~~--~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~-~g~~p~~~~~ 182 (330)
T PRK11028 119 ------------IQI--IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTV-EGAGPRHMVF 182 (330)
T ss_pred ------------eee--ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecC-CCCCCceEEE
Confidence 000 1122346778899999998665 78999999998533321100 0000111 1234678999
Q ss_pred ecCCCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368 262 HPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL 338 (487)
Q Consensus 262 ~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i 338 (487)
+|+| ++++++.. ++.|.+||+............+..++.. +. +......+.++|+|++++++. ++.|.+
T Consensus 183 ~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 183 HPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FS-DTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred CCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CC-CCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 9999 88877776 8999999997421000111222110000 00 112345689999999999874 489999
Q ss_pred EeCCCCCcee---eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCC
Q 011368 339 WDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV 401 (487)
Q Consensus 339 wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~ 401 (487)
|++...+..+ ........+ ..+.++|||++|++++. +++|.+|++..
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p----------------~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQP----------------RGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccC----------------CceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9997533222 222211111 47999999999998775 89999999853
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=9.7e-17 Score=134.95 Aligned_cols=225 Identities=16% Similarity=0.233 Sum_probs=167.4
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+|+|.+|++|+..+|.+.....|.||...+.+ .++...+++.|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd---------- 55 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD---------- 55 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence 4589999999999999999999999999987764 356678899998
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEc-cccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..|+.|.| +|..+.|++++.|..-++|.. .+++.+...
T Consensus 56 --~~vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkptl------------------------------------- 94 (361)
T KOG1523|consen 56 --KIVTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTL------------------------------------- 94 (361)
T ss_pred --cceeEEee--cCCCCceeEccCCCCccccccCCCCeeccce-------------------------------------
Confidence 89999999 567889999999999999998 555544321
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
. +..+....+++.|+|.++.||+| ....|.+|-++. +...-+- .+.-..+.+.|.+++|+|++ -+|
T Consensus 95 -------v-LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdWWVs---KhikkPirStv~sldWhpnn-VLl 161 (361)
T KOG1523|consen 95 -------V-LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDWWVS---KHIKKPIRSTVTSLDWHPNN-VLL 161 (361)
T ss_pred -------e-EEEeccceeeEeecCcCceEEeccCccEEEEEEEec-ccceehh---hhhCCccccceeeeeccCCc-cee
Confidence 1 35778889999999999999999 888999998883 3322110 01124567889999999998 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceeeccc--ccccCcccc-------ccccccceeEEEEcCCCCEEEE-EeCCeEEEE
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDA--AESHGSKSF-------FTEIIASISDIKFANDGQHLLS-RDYMNLKLW 339 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h--~~~~~~~~~-------~~~~~~~v~~v~~s~~~~~l~s-~~d~~i~iw 339 (487)
++|+.|+..|++..--+. .+.. +.+-..+.. +..-.+.+..+.|+|+|..|+- +.|..+.+-
T Consensus 162 aaGs~D~k~rVfSayIK~--------Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKG--------VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred cccccCcceeEEEEeeec--------cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 999999999999754322 1110 000111111 1123478999999999999985 567999999
Q ss_pred eCCCCCceeeeee
Q 011368 340 DIRMDSTPVATFK 352 (487)
Q Consensus 340 d~~~~~~~~~~~~ 352 (487)
|...+.+.+....
T Consensus 234 da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 234 DAAGPSERVQSVA 246 (361)
T ss_pred ecCCCchhccchh
Confidence 9865333333333
No 194
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=1.9e-14 Score=138.91 Aligned_cols=315 Identities=24% Similarity=0.355 Sum_probs=219.3
Q ss_pred cEEEEEE-cCCCC-EEEEEe-cCCcEEEEEeeC-CcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 34 IVSAIEF-DKTGD-YLAVGD-RGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 34 ~V~~~~~-s~~~~-~l~~g~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.+..+.+ ++++. +++..+ .|+.+.+|+... .. ....+..|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~-------- 155 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK---------------------------LIRTLEGHS-------- 155 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe---------------------------EEEEEecCc--------
Confidence 5777777 88887 555544 499999999875 22 357788888
Q ss_pred cccccceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|..+.| ++++..+++++. |+.+++|++..+.....
T Consensus 156 ----~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 193 (466)
T COG2319 156 ----ESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRTGKPLST------------------------------------ 193 (466)
T ss_pred ----ccEEEEEE--CCCCCEEEecCCCCCceEEEEcCCCceEEe------------------------------------
Confidence 88999999 567778888875 99999999987544333
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.+|...|.+++|+|++. .++++ .|+.|++||.. .+..... .+..|.... -..|+|++
T Consensus 194 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~------~~~~~~~~~-~~~~~~~~- 253 (466)
T COG2319 194 -----------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRS------TLSGHSDSV-VSSFSPDG- 253 (466)
T ss_pred -----------eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEee------ecCCCCcce-eEeECCCC-
Confidence 256899999999999998 66665 99999999887 3333321 245666664 33899998
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
..+++++.|+.+++|+++..... ...+.. |...+.++.|+|++..+++++ |+.+.+||... .
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~ 316 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSSL---LRTLSG-------------HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET-G 316 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCcE---EEEEec-------------CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC-C
Confidence 89999999999999999876531 122222 467899999999888888864 57899999876 4
Q ss_pred ceeeeee--cccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 346 TPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 346 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
....... .|...+ ..+.|.+++..++.+ ..|+.+.+|++.... .......... +..+.+.
T Consensus 317 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~ 379 (466)
T COG2319 317 KLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSN-VLSVSFS 379 (466)
T ss_pred ceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCce-EEEEEEC
Confidence 4444443 444322 477774343556655 688999999998875 2222222222 5566666
Q ss_pred eCCccccccccceeeecccce-ecCCCCCcccccc-ccC-CCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368 423 AAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSY-NLS-SKLLHLAWHPTTNLIACAN-GNSLFFHY 486 (487)
Q Consensus 423 ~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~-~~~-~~v~~~~~spd~~~la~~s-~~~~~i~~ 486 (487)
+ . ... ...+..++. .+|.......... ... ..+....+++++..++.++ .+.+.+|.
T Consensus 380 ~-~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 380 P-D-GRV-----VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred C-C-CCE-----EEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 5 4 333 223666666 8884443332222 222 7899999999999999865 44577775
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=2e-16 Score=131.31 Aligned_cols=210 Identities=9% Similarity=0.169 Sum_probs=158.6
Q ss_pred cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.-++..++++..|+. +-++|.+++-|-+..|||++++. .....+.+-+|.
T Consensus 146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~------------------------~~~vkTQLIAHD----- 196 (364)
T KOG0290|consen 146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV------------------------SGTVKTQLIAHD----- 196 (364)
T ss_pred ccccCCcccccccccCCcceeEeecccCeEEEEEEeecc------------------------ccceeeEEEecC-----
Confidence 445678999999997 55889999999999999999873 233457788898
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|..|+|.. ..-+.|++.+.||.+|++|++.-+...+....
T Consensus 197 -------KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~------------------------------ 238 (364)
T KOG0290|consen 197 -------KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYED------------------------------ 238 (364)
T ss_pred -------cceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecC------------------------------
Confidence 8899999963 33568999999999999999876544332111
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCC-CCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNS-DCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
.....+...++|++ |-+++|+ + +...|.|.|++.+...+ .++.+|.+.|..++|.|
T Consensus 239 --------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv-------a~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 239 --------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV-------ARLRNHQASVNGIAWAP 297 (364)
T ss_pred --------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce-------ehhhcCcccccceEecC
Confidence 11155677889987 4567777 4 77889999999766554 36789999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCcc--ccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEeCCeEEEE
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLW 339 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~d~~i~iw 339 (487)
..+..|++++.|....+||+.+.-. ....+..+.. .+.|+.+.|++ .+.+++.+..+.+.+-
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--------------~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--------------GGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchhhhhc--------------cceeeeeeecccCCCEEEEEecCeeeEE
Confidence 9889999999999999999987432 1111222222 57899999995 5678888876655543
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.3e-17 Score=146.48 Aligned_cols=243 Identities=21% Similarity=0.253 Sum_probs=164.2
Q ss_pred CCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (487)
Q Consensus 24 ~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (487)
...++.+|++-|+|++|+.+|.+|++|+.|-.+.|||.-..+.. ...-.||.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--------------------------hsI~TgHt-- 93 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--------------------------HSISTGHT-- 93 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--------------------------eeeecccc--
Confidence 34567889999999999999999999999999999997644331 34455788
Q ss_pred cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|.++.|.|..++..+++|+.|..|+++|+...+..... ...
T Consensus 94 ----------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d---~~~------------------------ 136 (758)
T KOG1310|consen 94 ----------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD---HGM------------------------ 136 (758)
T ss_pred ----------cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc---cCc------------------------
Confidence 8999999999888899999999999999999853311110 000
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCcEEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVITSA 259 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~v 259 (487)
....+. ...|...|..++..|++ ..+-++ .||+|+-+|++....+-.-.+.. ...+...--...|+
T Consensus 137 ---------~~~~~~-~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 137 ---------EETTRC-WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ---------cchhhh-hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 111222 27899999999999988 777778 99999999999644332111000 00111122346899
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccccc----Ccccccccc-----------ccceeEEEEcCC
Q 011368 260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEI-----------IASISDIKFAND 324 (487)
Q Consensus 260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~----~~~~~~~~~-----------~~~v~~v~~s~~ 324 (487)
..+|..+.+|++|+.|-..++||.+.............. .+| ...-..++| ..-++-++|+|+
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN 284 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN 284 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC--CCCcccchhheecCccccCcccccccceeeeEEEEECCC
Confidence 999999899999999999999996542211000000000 000 000111122 122566789999
Q ss_pred CCEEEEE-eCCeEEEEeCCC
Q 011368 325 GQHLLSR-DYMNLKLWDIRM 343 (487)
Q Consensus 325 ~~~l~s~-~d~~i~iwd~~~ 343 (487)
|.-|+.. +...|+++|+..
T Consensus 285 GtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 285 GTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CcEEEEeeCCeEEEEEeecC
Confidence 9877765 347899999864
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.7e-17 Score=144.20 Aligned_cols=308 Identities=16% Similarity=0.184 Sum_probs=219.0
Q ss_pred CCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
..++-.|.+.|+.+.|+..|..|++|+.|..|.+||...+... +.-..||.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~--- 185 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHC--- 185 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--------------------------cccccccc---
Confidence 3456679999999999999999999999999999999877653 22234677
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|..-.|.|..+..-+++++.||.+++=.+.... .....
T Consensus 186 ---------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~------------------------------ 226 (559)
T KOG1334|consen 186 ---------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK------------------------------ 226 (559)
T ss_pred ---------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecce------------------------------
Confidence 67777789888888899999999999987765432 22111
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC---cEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---VITS 258 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~ 258 (487)
.+..|.++|+-++.-|+. ..|.++ .|+.+.-.|++......... ..+.+.. ....
T Consensus 227 ---------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-----cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 227 ---------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-----CREADEKERVGLYT 286 (559)
T ss_pred ---------------ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-----eeccCCccceeeee
Confidence 136899999999998864 456666 99999999998543322221 1122333 5678
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEccCCccc--cccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEeCCe
Q 011368 259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDYMN 335 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~d~~ 335 (487)
++.+|.....+++++.|-.+++||.+.-..- ...+..|..|.. .......|++++|+.++ .+|++-.|-.
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl-------~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL-------VEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc-------cccCcccceeEEecCCccceeeeecccc
Confidence 8999988679999999999999998863311 001122222111 11123579999999665 4555557788
Q ss_pred EEEEeCCCC-C----------ceee-eeecccccccccccccCCCCcceeeEEE-EcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 336 LKLWDIRMD-S----------TPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 336 i~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
|+++.-... + ..+. .+++|.+..+ + -.+. |.|...|+++|++-|.|.||+-.++
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T----------V---KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT----------V---KGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccc----------c---ceeeeccCccceEEecCccceEEEEecchh
Confidence 999954321 1 1222 3777776542 1 2554 4688999999999999999998877
Q ss_pred CceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368 403 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 403 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
+.+..+++...-|+++...|- ++.||+.+-|.. ++|..
T Consensus 427 -eii~~MegDr~VVNCLEpHP~-------~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 427 -EIIRFMEGDRHVVNCLEPHPH-------LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -HHHHHhhcccceEeccCCCCC-------CchhhccCCccceeeecC
Confidence 556777777778899988885 344899999988 99943
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.7e-15 Score=141.70 Aligned_cols=308 Identities=15% Similarity=0.218 Sum_probs=207.8
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.-.++|.++||+++++|+|..||.|.+|.--..+. .-...+.++=|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------ 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------ 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc------
Confidence 345777799999999999999999999999997433111 111235677777
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|++++| +++|.+|++|+..+.+.+|.+.+++.+ +
T Consensus 252 ------~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kq-f----------------------------------- 287 (792)
T KOG1963|consen 252 ------DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQ-F----------------------------------- 287 (792)
T ss_pred ------cccceeEE--ecCCceEeecccceEEEEEeecCCCcc-c-----------------------------------
Confidence 78999999 689999999999999999999988732 2
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC---CCCCCCCcEEEEEEec
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHP 263 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~p 263 (487)
+..-.++|..+.++||+...+.. .|+.|.+...........+-.+++. .-....+-.+.+.++|
T Consensus 288 ------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 288 ------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred ------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence 46778899999999999999998 9999999877533322222111111 0112345567889999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---------C-
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---------Y- 333 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---------d- 333 (487)
.- +.++..+..|.|.+||+.+.+.+.+. ++... ...... ..+.-.+++++.+..|.++++.. |
T Consensus 356 r~-~~~vln~~~g~vQ~ydl~td~~i~~~-~v~~~-n~~~~~----~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 356 RT-NSLVLNGHPGHVQFYDLYTDSTIYKL-QVCDE-NYSDGD----VNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred CC-CceeecCCCceEEEEeccccceeeeE-EEEee-cccCCc----ceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 65 78889999999999999987655222 22111 011110 02345788888888999999863 1
Q ss_pred -CeEEEEeCCCCCce----eeee-ecccccccccccccCCCCcceeeEEEE-cCCCC-EEEEEcCCCcEEEEEeCCCCc-
Q 011368 334 -MNLKLWDIRMDSTP----VATF-KIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGL-HFATGSYSNLLRIFSHGVGSA- 404 (487)
Q Consensus 334 -~~i~iwd~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~-~l~sg~~dg~i~iwd~~~~~~- 404 (487)
-.+++|-... ... ...+ ..|.... ...++ ++... ..++++.||.++||-+...+.
T Consensus 429 e~~LKFW~~n~-~~kt~~L~T~I~~PH~~~~---------------vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 429 EVSLKFWQYNP-NSKTFILNTKINNPHGNAF---------------VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred eEEEEEEEEcC-CcceeEEEEEEecCCCcee---------------EEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 2578897653 222 1222 2333321 23333 33333 789999999999999954322
Q ss_pred --------eeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCC
Q 011368 405 --------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSG 450 (487)
Q Consensus 405 --------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~ 450 (487)
+...-..|+.+++..+|+. ||.. |+.+-.+...+|+...
T Consensus 493 ~k~~s~W~c~~i~sy~k~~i~a~~fs~--dGsl-----la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 493 YKKSSNWTCKAIGSYHKTPITALCFSQ--DGSL-----LAVSFDDTITIWDYDT 539 (792)
T ss_pred CcCccceEEeeeeccccCcccchhhcC--CCcE-----EEEecCCEEEEecCCC
Confidence 1222235788999999987 6654 4444444449995543
No 199
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.4e-17 Score=147.00 Aligned_cols=318 Identities=15% Similarity=0.113 Sum_probs=201.2
Q ss_pred EEEcCCC--CEEEEEecCCcEEEE--EeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 38 IEFDKTG--DYLAVGDRGGRVILF--ETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 38 ~~~s~~~--~~l~~g~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
+++.|.+ .+.++...+...++| ++..... -..+.+....+-.+...+....++..|.
T Consensus 234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I-------~~~~dd~~~~k~a~~k~w~ik~tl~s~~------------ 294 (577)
T KOG0642|consen 234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTI-------EDEFDDLSDLKKAFTKKWNIKFTLRSHD------------ 294 (577)
T ss_pred ccCCcccCCCccccCchHHHHhhcccchhcccc-------cccccchhhhhhhhheecceeeeeecch------------
Confidence 4555543 456666677778888 5443322 1111111000000111122223666676
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|..++|+| ....|++++.|+++++|++....... ... .
T Consensus 295 d~ir~l~~~~--sep~lit~sed~~lk~WnLqk~~~s~-----------------------------~~~---------~ 334 (577)
T KOG0642|consen 295 DCIRALAFHP--SEPVLITASEDGTLKLWNLQKAKKSA-----------------------------EKD---------V 334 (577)
T ss_pred hhhhhhhcCC--CCCeEEEeccccchhhhhhcccCCcc-----------------------------ccc---------e
Confidence 8899999964 45689999999999999994311000 000 0
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
.+..+ +.+|.++|.|++..+++..+++| .||+|+.|++..........+.. ...+.||.+.|+.+++++.. ..|+
T Consensus 335 epi~t-fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Ll 412 (577)
T KOG0642|consen 335 EPILT-FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLL 412 (577)
T ss_pred eeeEE-EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-ccee
Confidence 12223 38999999999999999999999 99999999776433322222110 23578999999999999987 8899
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE--EEeCCeEEEEeCCCCCcee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL--SRDYMNLKLWDIRMDSTPV 348 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~--s~~d~~i~iwd~~~~~~~~ 348 (487)
+++.||++++|+...... .+|..- .-.+.-..+.+-.....+. +...+.-.++++.. ...+
T Consensus 413 scs~DgTvr~w~~~~~~~-----~~f~~~-----------~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~ 475 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESP-----CTFGEP-----------KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDL 475 (577)
T ss_pred eecCCceEEeeccCCcCc-----cccCCc-----------cccCCcceEeeccchhHhhhhhcccccccchhhhh-hhhe
Confidence 999999999999877553 222220 0012334555532221111 12224444444443 2223
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 428 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 428 (487)
..+.....+.+. ....+..+.++|.+.+.+++..|+.|+++|..++ .......+|...++++++.| ++-
T Consensus 476 ~~~~s~~~~~~~--------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~--ng~ 544 (577)
T KOG0642|consen 476 LIFESSASPGPR--------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSMVAHKDSVTSLAIDP--NGP 544 (577)
T ss_pred eeccccCCCccc--------ccCccceEEecCCCCeeEecccCCceeccccccc-ccchheeeccceecceeecC--CCc
Confidence 333221111100 0011247889999999999999999999999988 55888899999999999998 666
Q ss_pred cccccceeeecccce-ecCCCC
Q 011368 429 RSSLSNLTRGLYRQA-HENSSS 449 (487)
Q Consensus 429 ~~~~~~l~~g~~~~~-~~w~~~ 449 (487)
+ |++|+.|+. .+|+..
T Consensus 545 ~-----l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 545 Y-----LMSGSHDGSVRLWKLD 561 (577)
T ss_pred e-----EEeecCCceeehhhcc
Confidence 6 999999999 999653
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=3.2e-15 Score=126.31 Aligned_cols=317 Identities=13% Similarity=0.144 Sum_probs=193.5
Q ss_pred CcEEEEEEcCCCCEEEEE-ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
+.|.-+.|..|..++.++ ..|+.|.+|++...+- ...+....
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew---------------------------~ckIdeg~---------- 91 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW---------------------------YCKIDEGQ---------- 91 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeeccee---------------------------EEEeccCC----------
Confidence 456778888888766655 5788999999864432 23344333
Q ss_pred cccceeEEEEEecCCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc-eeeee-
Q 011368 112 IEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHL- 188 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 188 (487)
.++.+++| +|+|+.+ .+...|-.|.+|.+.+.+...+.-..... ...+| .+++.+.+.....+.. +..+.
T Consensus 92 --agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~--kg~~f-~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 92 --AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV--KGYAF-HPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred --CcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccccCc--eeEEE-CCCCceeeeeecccHHHHHHHHh
Confidence 78999999 6788554 55668999999999887655543222222 22222 3555555555443322 11111
Q ss_pred --eeeccceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 189 --EWTENMATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 189 --~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
.|... +.+ .-.+-..+.+.|+|||+.|++= -+-.|..|... -.+..++|+|
T Consensus 165 c~~W~ll---~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------------lG~k~v~wsP 220 (447)
T KOG4497|consen 165 CKAWILL---KEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------------LGLKFVEWSP 220 (447)
T ss_pred hHHHHHH---Hhc-CCCcccccCceECCCCcEEEEecchhhheeeeeeec--------------------cceeEEEecc
Confidence 12211 111 3345567889999999988852 23333333222 3477899999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccc--------------------------------eeecccccccC-------
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSA--------------------------------RILRDAAESHG------- 304 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------~~~~~h~~~~~------- 304 (487)
.+ ++|++|+.|+.+|+.+--+-+...... ..++.|.....
T Consensus 221 ~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 221 CN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred cc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 98 999999999988876544321100000 00000000000
Q ss_pred ----------ccccccccccceeEEEEcCCCCEEEEEeC---CeEEEEeCCCCCceeeeeecccccccccccccCCCCcc
Q 011368 305 ----------SKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 371 (487)
Q Consensus 305 ----------~~~~~~~~~~~v~~v~~s~~~~~l~s~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (487)
+..-+.+....+..++|++|..|+++..| +.+.+||++. .+....+.. ..++
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLiQ-k~pi------------- 364 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVLIQ-KHPI------------- 364 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhhhh-ccce-------------
Confidence 00111223456778999999999999865 8899999985 444333332 2222
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCc
Q 011368 372 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGH 451 (487)
Q Consensus 372 ~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~ 451 (487)
....|+|....|+.+.....+++|-.... .+.-.|. .| +
T Consensus 365 --raf~WdP~~prL~vctg~srLY~W~psg~---------------~~V~vP~-~G-F---------------------- 403 (447)
T KOG4497|consen 365 --RAFEWDPGRPRLVVCTGKSRLYFWAPSGP---------------RVVGVPK-KG-F---------------------- 403 (447)
T ss_pred --eEEEeCCCCceEEEEcCCceEEEEcCCCc---------------eEEecCC-CC-c----------------------
Confidence 58999999888888877778999987532 1122221 22 2
Q ss_pred cccccccCCCeEEEEEcCCCCEEEEecCCeEE
Q 011368 452 HELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483 (487)
Q Consensus 452 ~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~ 483 (487)
.|.+++|+.+|..|+..+.|...
T Consensus 404 ---------~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 404 ---------NIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred ---------eeeeEEecCCCcEEEEEcCCceE
Confidence 67889999999998888877543
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.1e-15 Score=147.47 Aligned_cols=269 Identities=14% Similarity=0.176 Sum_probs=179.1
Q ss_pred cCcEEEEEEcC--CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 32 ~~~V~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
...|+.+.+-. |..++.+|+.||.|+||+-....- ...+.++.+.+-+. .+ .
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----------------------~~~eLVTaw~~Ls~---~~-~ 1162 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----------------------KKPELVTAWSSLSD---QL-P 1162 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEeccccccc----------------------CCceeEEeeccccc---cC-c
Confidence 34688887754 457899999999999997432210 02233333332210 00 0
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
...... .-+.| .....+|++++.-..|+|||.+........
T Consensus 1163 ~~r~~~-~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di------------------------------------ 1203 (1387)
T KOG1517|consen 1163 GARGTG-LVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQVVADI------------------------------------ 1203 (1387)
T ss_pred cCCCCC-eeeeh--hhhCCeEEecCCeeEEEEEecccceeEeec------------------------------------
Confidence 000112 44667 345556777777899999999877654331
Q ss_pred eeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc--EEEEEEecCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV--ITSAEFHPIY 265 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~ 265 (487)
..+....|+++.-+- .|+.|++| .||.|++||.+.....-.+ .....|+.. |..+.+.+.|
T Consensus 1204 ----------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v-----~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1204 ----------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV-----CVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred ----------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc-----eeecccCCcccceeEEeecCC
Confidence 134455667766543 57999999 9999999999855432111 134567776 9999999988
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 345 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~ 345 (487)
-..|++|+.+|.|++||++... ...... ...| ....+.++++..+++...+|+|+.+.|+||++. +
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~-~e~~~~-iv~~----------~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~--G 1334 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSS-KETFLT-IVAH----------WEYGSALTALTVHEHAPIIASGSAQLIKIYSLS--G 1334 (1387)
T ss_pred CcceeeeccCCeEEEEecccCc-ccccce-eeec----------cccCccceeeeeccCCCeeeecCcceEEEEecC--h
Confidence 4569999999999999999842 111111 1111 000125899999999999999987999999995 6
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+.+..++.+.... ...+..+.+++|+|-.-++|+|+.|.+|.||.....
T Consensus 1335 ~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 6666666443321 223334469999999999999999999999988754
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=3.6e-16 Score=127.98 Aligned_cols=264 Identities=9% Similarity=0.087 Sum_probs=166.8
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
...+++|. +.|+++.| ....+|++|..-|.|++|++.+.+......
T Consensus 7 ~fvLRp~~------------~~v~s~~f---qa~~rL~sg~~~G~V~~w~lqt~r~~~~~r------------------- 52 (323)
T KOG0322|consen 7 FFVLRPHS------------SSVTSVLF---QANERLMSGLSVGIVKMWVLQTERDLPLIR------------------- 52 (323)
T ss_pred eeEecccc------------chheehhh---ccchhhhcccccceEEEEEeecCccchhhh-------------------
Confidence 44566888 88999999 334569999999999999999876443311
Q ss_pred ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEE--e---------
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNI--V--------- 242 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~--~--------- 242 (487)
..+...|+.+.--|++.+..-|.|..+.+|++.... .+.+ +
T Consensus 53 ---------------------------~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~-~i~i~Si~~nslgFCr 104 (323)
T KOG0322|consen 53 ---------------------------LFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA-FISIHSIVVNSLGFCR 104 (323)
T ss_pred ---------------------------hhccceeeceeecCCcchhhcCCCceEEEEEccCcc-eEEEeeeecccccccc
Confidence 134555666666665433333466666666665311 0000 0
Q ss_pred -----------------------------------ecCCCCCCCCCCcEEEEEEec-CCC-CEEEEEeCCCeEEEEEccC
Q 011368 243 -----------------------------------DMKPSNMDDLTEVITSAEFHP-IYC-NLLAYSSSRGFVRLVDMRQ 285 (487)
Q Consensus 243 -----------------------------------~~~~~~~~~~~~~v~~v~~~p-~~~-~~l~~~~~dg~i~iwd~~~ 285 (487)
.+....-.+..+.++|..+.- .+. -++++|.++|.+.+||+.+
T Consensus 105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 000001112234566666432 221 3566677899999999999
Q ss_pred CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCc--eeeeeecccccccccc
Q 011368 286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDST--PVATFKIHEHLRPKLC 362 (487)
Q Consensus 286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~ 362 (487)
+....+....++ .......|..+|.++.|.+.-..=++| .+..+..|.+..... ++.....-+++
T Consensus 185 ~~~~~~~~~~~k-------v~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp----- 252 (323)
T KOG0322|consen 185 GDKIIQLPQSSK-------VESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP----- 252 (323)
T ss_pred Cceeeccccccc-------cccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC-----
Confidence 753321111111 122234578899999997543322333 346788888764211 11111111111
Q ss_pred cccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccc
Q 011368 363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~ 442 (487)
++..+.+-||++.+|+++.|+.||||+.++. ..+..++.|...+++++|+| +..+ +++++.|.
T Consensus 253 ---------Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfsp--d~~l-----mAaaskD~ 315 (323)
T KOG0322|consen 253 ---------GVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSP--DCEL-----MAAASKDA 315 (323)
T ss_pred ---------CccceEEccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCC--CCch-----hhhccCCc
Confidence 1247899999999999999999999999998 45889999999999999999 4444 89999999
Q ss_pred e-ecCCC
Q 011368 443 A-HENSS 448 (487)
Q Consensus 443 ~-~~w~~ 448 (487)
. .+|+.
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9 99954
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=9.6e-16 Score=129.03 Aligned_cols=243 Identities=12% Similarity=0.089 Sum_probs=170.8
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
++|+|.+| ++++..++.+.....|.||.....+ ....
T Consensus 11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~w~~~---------------------------------------- 48 (361)
T KOG1523|consen 11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADLWEPA---------------------------------------- 48 (361)
T ss_pred Cceeeeee--cCCCceEEeccCCceEEEEEecCCCCceec----------------------------------------
Confidence 88999999 6899999999999999999988776 2221
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
.+ +..|...|++++|+|..+.|++| .|..-++|....++.-... ..+..++..++++.|+|.+ +.||+
T Consensus 49 ----ht-ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt-----lvLlRiNrAAt~V~WsP~e-nkFAV 117 (361)
T KOG1523|consen 49 ----HT-LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT-----LVLLRINRAATCVKWSPKE-NKFAV 117 (361)
T ss_pred ----ee-hhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc-----eeEEEeccceeeEeecCcC-ceEEe
Confidence 11 47899999999999999999999 9999999998534432221 1345688899999999999 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC---CCce
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM---DSTP 347 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~---~~~~ 347 (487)
|+....|.+|-++...-. -...|.. ..+...|.++.|+|++-+|++|+ |+..|++..-- +.++
T Consensus 118 gSgar~isVcy~E~ENdW-----WVsKhik--------kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp 184 (361)
T KOG1523|consen 118 GSGARLISVCYYEQENDW-----WVSKHIK--------KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP 184 (361)
T ss_pred ccCccEEEEEEEecccce-----ehhhhhC--------CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCC
Confidence 999999999988875421 0011100 12357899999999999999985 79999887521 0111
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
...--+.+.+-..++..+. ..--++..+.|+|+|..|+-.+.|..+.+-|.....+..+.+....-|..++.+..
T Consensus 185 ap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 185 APTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred CCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec
Confidence 1000011111011111110 11113469999999999999999999999998877555555555556666665553
No 204
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=4.9e-16 Score=131.19 Aligned_cols=219 Identities=20% Similarity=0.292 Sum_probs=143.9
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I 116 (487)
-++|||+|+++|+++.- .+.|=|.++-+. |. -|.+ -+.|
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~---------------------------------~q-lf~c------ldki 51 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL---------------------------------HQ-LFLC------LDKI 51 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH---------------------------------HH-HHHH------HHHh
Confidence 46799999999999765 677777665543 11 0111 1568
Q ss_pred eEEEEEecCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 117 NRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 117 ~~v~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
.-+.| ..+..+++.+ ..|+.|.+|++...+....
T Consensus 52 ~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ck------------------------------------------- 86 (447)
T KOG4497|consen 52 VYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYCK------------------------------------------- 86 (447)
T ss_pred hheee--eccceeeeeeeeccceEEEEEeecceeEEE-------------------------------------------
Confidence 88999 4666666654 6788999999987665443
Q ss_pred eeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 196 TKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
+.....++..++|||||+.|.. + .+-.|.+|.+.+.. ...+ +-....+..++|+|+| ++.+.++
T Consensus 87 ----Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~~~--------~~pK~~~kg~~f~~dg-~f~ai~s 152 (447)
T KOG4497|consen 87 ----IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-GYLL--------PHPKTNVKGYAFHPDG-QFCAILS 152 (447)
T ss_pred ----eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-eEEe--------cccccCceeEEECCCC-ceeeeee
Confidence 2566788999999999977665 5 89999999999543 3322 2223346889999999 8888776
Q ss_pred CCCe---EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC---CeEEEEeCCCCCce
Q 011368 274 SRGF---VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTP 347 (487)
Q Consensus 274 ~dg~---i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d---~~i~iwd~~~~~~~ 347 (487)
.-.. +.|.....-.+. +.|.. .+-..+.+.|+|||..|+.-+. -.|..|.-.
T Consensus 153 RrDCkdyv~i~~c~~W~ll----~~f~~-------------dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~----- 210 (447)
T KOG4497|consen 153 RRDCKDYVQISSCKAWILL----KEFKL-------------DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG----- 210 (447)
T ss_pred cccHHHHHHHHhhHHHHHH----HhcCC-------------CcccccCceECCCCcEEEEecchhhheeeeeeec-----
Confidence 5311 111111111111 22222 1346788999999988775432 222222211
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
-+ +..+.|+|.+++|+.|+.|+.+||-+--
T Consensus 211 -------lG----------------~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 211 -------LG----------------LKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred -------cc----------------eeEEEeccccceEEeeccchhhhhhcee
Confidence 11 1379999999999999999999886543
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.2e-15 Score=131.65 Aligned_cols=176 Identities=16% Similarity=0.119 Sum_probs=133.2
Q ss_pred eEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCC
Q 011368 208 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 286 (487)
Q Consensus 208 ~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~ 286 (487)
.+++|+++|..++++ .||.+++|+........ ....|...|.++.|+|+| ++|++.+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 789999999999999 99999999976443322 346788999999999999 999999999 8999999998
Q ss_pred ccccccceeecccccccCccccccccccceeEEEEcCCC---CEEEEE--eC-CeEEEEeCCCCCc-----eeeeeeccc
Q 011368 287 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSR--DY-MNLKLWDIRMDST-----PVATFKIHE 355 (487)
Q Consensus 287 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s~--~d-~~i~iwd~~~~~~-----~~~~~~~~~ 355 (487)
..+.... -+.. ...+..+.|+.|+ .+.+.+ .. +.|+.||+..... ....+..++
T Consensus 218 ~~~a~~t-~~~k--------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 218 AALARKT-PFSK--------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred chhhhcC-Cccc--------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 5432111 1222 3456778888776 333332 33 7788877754222 111112222
Q ss_pred ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368 356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
. +.+++.|+||++++.|+.||.|-|++..+.+.....-++|...|+.+.|+|.
T Consensus 283 s----------------iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 283 S----------------ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred c----------------ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 1 2599999999999999999999999999988888888999999999999994
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-14 Score=124.57 Aligned_cols=265 Identities=14% Similarity=0.135 Sum_probs=165.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.+..++|++--..+|++..|-.|+||+-.... ...++... +
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~----------------------------pt~Lks~s-----------Q 140 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----------------------------PTKLKSVS-----------Q 140 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCC----------------------------Cceecchh-----------h
Confidence 47789999976778889999999999965522 13333322 2
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..|++++|-|. .+..|+.|+..| |.+|.......... .....
T Consensus 141 rnvtclawRPl-saselavgCr~g-IciW~~s~tln~~r~~~~~s----------------------------------- 183 (445)
T KOG2139|consen 141 RNVTCLAWRPL-SASELAVGCRAG-ICIWSDSRTLNANRNIRMMS----------------------------------- 183 (445)
T ss_pred cceeEEEeccC-Ccceeeeeecce-eEEEEcCccccccccccccc-----------------------------------
Confidence 67999999763 345677777655 89998754221111 00000
Q ss_pred cceeeee-cccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 193 NMATKVY-PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 193 ~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
..+...+ -.+| ..|++++|++||..++++ .|..|.|||.+++. ...+. ....+.+.-+.|+|++ .+|
T Consensus 184 ~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~-------~~glgg~slLkwSPdg-d~l 253 (445)
T KOG2139|consen 184 THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLI-------PKGLGGFSLLKWSPDG-DVL 253 (445)
T ss_pred ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-ccccc-------ccCCCceeeEEEcCCC-CEE
Confidence 0011111 1344 789999999999999997 89999999999544 33221 1233567889999999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~ 349 (487)
.+++-|+..++|...+.-... +-.-+ .+.|...+|+|+|++|+-...+.-++|.+...++...
T Consensus 254 faAt~davfrlw~e~q~wt~e---rw~lg--------------sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~ 316 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKE---RWILG--------------SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV 316 (445)
T ss_pred EEecccceeeeehhcccceec---ceecc--------------CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc
Confidence 999999999999655432110 11122 3589999999999998877667777777755333221
Q ss_pred eeeccc-ccccccccc-------cCCCCcceeeEEEEcCCCCEEEEEcCCC--------cEEEEEeCC
Q 011368 350 TFKIHE-HLRPKLCDL-------YNNDSIFDKFECSVSGDGLHFATGSYSN--------LLRIFSHGV 401 (487)
Q Consensus 350 ~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~s~d~~~l~sg~~dg--------~i~iwd~~~ 401 (487)
...... ..+..+.++ ...-+--.+.+++|.|.|.+||+.-..+ .|.+||...
T Consensus 317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 111000 000000010 0000111235899999999999765443 355666553
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-15 Score=145.24 Aligned_cols=218 Identities=12% Similarity=0.093 Sum_probs=146.4
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
...|...+.+.+|||||++|+.++.+ ..|++||+.+++. +.+..+.+|.
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------------------~~l~~~~g~~--- 250 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------------------KVVASFRGHN--- 250 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-------------------------EEEecCCCcc---
Confidence 34567789999999999999987643 3699999987642 1233344443
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEE--EccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
..++| +|||+.|+.++ .++.+.|| |+.++....+
T Consensus 251 ------------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l----------------------------- 287 (429)
T PRK01742 251 ------------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQL----------------------------- 287 (429)
T ss_pred ------------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEee-----------------------------
Confidence 46789 68999888764 68876666 4445543322
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 259 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 259 (487)
..+...+....|+|||+.|+.+ .++...||+++..+.....+ .+.. .+.
T Consensus 288 -------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~--~~~ 338 (429)
T PRK01742 288 -------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG--YSA 338 (429)
T ss_pred -------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC--CCc
Confidence 4556667889999999987764 67888888876443333321 2222 457
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEE
Q 011368 260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 338 (487)
Q Consensus 260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~i 338 (487)
.|+|+| +.|++.+.++ +.+||+.+++.. .+..+ .....+.|+|||++|+.++ ++.+.+
T Consensus 339 ~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~~--------------~~~~~~~~sPdG~~i~~~s~~g~~~~ 397 (429)
T PRK01742 339 QISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSST--------------FLDESPSISPNGIMIIYSSTQGLGKV 397 (429)
T ss_pred cCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecCC--------------CCCCCceECCCCCEEEEEEcCCCceE
Confidence 899999 8888887765 556999887532 12110 1224578999999999875 466666
Q ss_pred EeCC-CCCceeeeeecccccccccccccCCCCcceeeEEEEcCC
Q 011368 339 WDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 381 (487)
Q Consensus 339 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 381 (487)
|++. ..+.....+..+...+ ..++|||-
T Consensus 398 l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~ 426 (429)
T PRK01742 398 LQLVSADGRFKARLPGSDGQV---------------KFPAWSPY 426 (429)
T ss_pred EEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence 6642 2367777787666533 36888873
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=9.7e-16 Score=130.09 Aligned_cols=264 Identities=9% Similarity=0.072 Sum_probs=168.3
Q ss_pred ccCcEEEEEEcC--CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 31 DVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 31 h~~~V~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
+...++.+.|.. ....+.+|+.||+|++||++..... ....+.+|.+
T Consensus 69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------------------------a~~~~~~~~~------ 117 (376)
T KOG1188|consen 69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------------------------ARISWTQQSG------ 117 (376)
T ss_pred CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------------------------hheeccCCCC------
Confidence 456677788876 3467889999999999999876542 1223334431
Q ss_pred ccccccceeEEEEEecCCCcEEEEEe----CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
.+..+++- +..+..+++|. .|-.|.+||++..+.
T Consensus 118 -----~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq----------------------------------- 155 (376)
T KOG1188|consen 118 -----TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQ----------------------------------- 155 (376)
T ss_pred -----CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccc-----------------------------------
Confidence 45566665 34666777764 677899999987653
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
.++.+...|.+.|++++|+| +.++|++| .||-|.++|++.....-.+ ...-.|...|.++.|.
T Consensus 156 ----------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL-----~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 156 ----------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL-----LHVINHGSSIHLIGWL 220 (376)
T ss_pred ----------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-----HHhhcccceeeeeeee
Confidence 12334578999999999999 57788999 9999999999854321111 1233577789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-EeC-CeEEEEe
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-MNLKLWD 340 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~d-~~i~iwd 340 (487)
..+.+.|.+-+..+...+|+++.+... ..++. +.-......-......+-......+....+. |.+ +...++-
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~~~----~~~~~-~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~ 295 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGSEE----TWLEN-PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFP 295 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCChh----hcccC-ccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEE
Confidence 888778999999999999999987632 11111 0000000000000112222222223444443 444 6666655
Q ss_pred CCC--C---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 341 IRM--D---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 341 ~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+.. . ...+..+.++...+ |+++.|...+.++.+|+.||.+.+|....
T Consensus 296 ~~~~~s~~~~~~~a~l~g~~~ei--------------VR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 296 LVDTSSGSLLTEPAILQGGHEEI--------------VRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eeecccccccCccccccCCcHHH--------------HHHHhhhcccceeeccCCCceEEEEecCC
Confidence 431 1 23445555533221 15778888889999999999999999743
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=5.3e-14 Score=134.04 Aligned_cols=212 Identities=15% Similarity=0.169 Sum_probs=139.5
Q ss_pred cceeEEEEEecCCCcEEEEEe---CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+...+| +|||+.|+..+ .+..|.+|++.+++...+
T Consensus 199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-------------------------------------- 238 (429)
T PRK03629 199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV-------------------------------------- 238 (429)
T ss_pred CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------------------------
Confidence 67899999 68899888754 345789999988764433
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
......+...+|+|||+.|+.. .++ .|++||+++ +....+ ..+...+....|+|+|
T Consensus 239 ----------~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~~~l--------t~~~~~~~~~~wSPDG- 298 (429)
T PRK03629 239 ----------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQIRQV--------TDGRSNNTEPTWFPDS- 298 (429)
T ss_pred ----------cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCEEEc--------cCCCCCcCceEECCCC-
Confidence 1222334568999999988864 344 588999984 333322 2233456789999999
Q ss_pred CEEEEEeCC-CeEEEE--EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEE
Q 011368 267 NLLAYSSSR-GFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLW 339 (487)
Q Consensus 267 ~~l~~~~~d-g~i~iw--d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iw 339 (487)
+.|+..+.+ +...|| |+.++.. +.+.. .........|+|||++|+... + ..|.+|
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~-------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 878777654 444555 5555432 22221 023456788999999988643 2 568899
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCc---EEEEEeCCCCceeEEEeccCCcc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~---i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
|+.+ +. ...+...... ....|+|||++|+.++.++. +.++++. + .....+.+|...+
T Consensus 361 dl~~-g~-~~~Lt~~~~~----------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G-~~~~~l~~~~~~~ 420 (429)
T PRK03629 361 DLAT-GG-VQVLTDTFLD----------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-G-RFKARLPATDGQV 420 (429)
T ss_pred ECCC-CC-eEEeCCCCCC----------------CCceECCCCCEEEEEEcCCCceEEEEEECC-C-CCeEECccCCCCc
Confidence 9875 43 2333321110 26789999999999887764 6677764 3 3356677788888
Q ss_pred ccceEee
Q 011368 417 RKPILQA 423 (487)
Q Consensus 417 ~~~~~~~ 423 (487)
...+|+|
T Consensus 421 ~~p~Wsp 427 (429)
T PRK03629 421 KFPAWSP 427 (429)
T ss_pred CCcccCC
Confidence 8888876
No 210
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.3e-14 Score=114.11 Aligned_cols=277 Identities=12% Similarity=0.119 Sum_probs=168.2
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.+-+| +|.+++|++|..+|.|.+..+.+-........ .
T Consensus 11 ~tvf~qa~--sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~-------------------------------------g 51 (325)
T KOG0649|consen 11 NTVFAQAI--SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPP-------------------------------------G 51 (325)
T ss_pred HHHHHHhh--CCcceEEEEecCCCeEEEEEehhhhccccCCC-------------------------------------C
Confidence 34566677 57789999999999999998875321111000 0
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCcee---EEeecC--CCCCCCCCCcEEEEEEecCCCCE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF---NIVDMK--PSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~---~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.......+|+++|+.++|. ..+|++|.||.|+-|..+...+.. .++..+ .++-.-.-..|+++...|.. +-
T Consensus 52 k~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nS 128 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NS 128 (325)
T ss_pred CcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-Cc
Confidence 11111137999999999998 568888878999999876433211 111111 01100112358899999987 77
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE-cCCCCEEEEEeCCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF-ANDGQHLLSRDYMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~s~~d~~i~iwd~~~~~~~ 347 (487)
++.++.|+.+.-||+++|+.. +.+.+ |+..|.+++- +.+++.|..+.||++|+||.++ .+.
T Consensus 129 i~~AgGD~~~y~~dlE~G~i~----r~~rG-------------HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~ 190 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDGRIQ----REYRG-------------HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKH 190 (325)
T ss_pred EEEecCCeEEEEEEecCCEEE----EEEcC-------------CcceeeeeeecccCcceeecCCCccEEEEeccc-cce
Confidence 777779999999999999865 67777 4889999988 4555444444679999999998 787
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce-eEEEeccCCccccceEeeCCc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 426 (487)
+..+.....+... ..+.-. +-.+..-+..+|++|+. -.+.+|+++..+.. ...+.+| +..+.|..
T Consensus 191 v~~ie~yk~~~~l-----Rp~~g~--wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpipa~---v~~v~F~~--- 256 (325)
T KOG0649|consen 191 VSMIEPYKNPNLL-----RPDWGK--WIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--- 256 (325)
T ss_pred eEEeccccChhhc-----CcccCc--eeEEEeccCceEEecCC-CceeEEeccCCCceEEEecccc---eeEeeeec---
Confidence 7777654432110 000111 22444556678887765 47999999976432 3344444 33444542
Q ss_pred cccccccceeeecccceecCCCCCccccccccCC-CeEEEEEcC
Q 011368 427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS-KLLHLAWHP 469 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~-~v~~~~~sp 469 (487)
..+ ++.|..+...-|..+..+........ ......|+.
T Consensus 257 d~v-----l~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~ 295 (325)
T KOG0649|consen 257 DCV-----LIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQT 295 (325)
T ss_pred ceE-----EEeccccceeeeeeccEEEEeccCCccceeeecccC
Confidence 222 34443444455644444443333322 234444543
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=3.9e-16 Score=137.60 Aligned_cols=263 Identities=12% Similarity=0.123 Sum_probs=199.4
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
.-..+.+ +.+|.+++.++..|.|-.+|..++++...
T Consensus 131 GPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~E------------------------------------------ 166 (545)
T KOG1272|consen 131 GPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFE------------------------------------------ 166 (545)
T ss_pred CCeeeee--cCCccEEEecCCccceeeeecccceeeee------------------------------------------
Confidence 3466777 68999999999999999999999887654
Q ss_pred eeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368 195 ATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 274 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 274 (487)
..-...|.++.|-.+.++||++....+++||-. +..+. .+..| ..|..+.|-|.. .+|++++.
T Consensus 167 ------i~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~--GtElH-------Clk~~-~~v~rLeFLPyH-fLL~~~~~ 229 (545)
T KOG1272|consen 167 ------INVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN--GTELH-------CLKRH-IRVARLEFLPYH-FLLVAASE 229 (545)
T ss_pred ------eehhhhhhhhhhhcchHHHHhhhhceEEEecCC--CcEEe-------ehhhc-Cchhhhcccchh-heeeeccc
Confidence 223455889999989999999988899999977 32222 23333 457899999998 88999999
Q ss_pred CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeec
Q 011368 275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI 353 (487)
Q Consensus 275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~ 353 (487)
.|.++.-|+..|+++ ..+.. -.+.+..+.-+|-+..+-.|. .|+|.+|...+ ..++..+-.
T Consensus 230 ~G~L~Y~DVS~GklV----a~~~t-------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc 291 (545)
T KOG1272|consen 230 AGFLKYQDVSTGKLV----ASIRT-------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC 291 (545)
T ss_pred CCceEEEeechhhhh----HHHHc-------------cCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh
Confidence 999999999999876 33332 145778888899888887885 59999999987 888888888
Q ss_pred ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccccc
Q 011368 354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS 433 (487)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 433 (487)
|.+++ .++++.++|+|+||.+.|..++|||+++-.. ..++.. ..+...++++. .+.
T Consensus 292 H~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~Sq--kgl----- 347 (545)
T KOG1272|consen 292 HRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSLSQ--KGL----- 347 (545)
T ss_pred cCCCc---------------ceEEECCCCcEEeecccccceeEeeeccccc-cceeec-CCCcccccccc--ccc-----
Confidence 98876 5999999999999999999999999998743 333333 34455666664 222
Q ss_pred ceeeecccceecCCCC-------CccccccccCCCeEEEEEcCCCCEEEEecCCe
Q 011368 434 NLTRGLYRQAHENSSS-------GHHELSYNLSSKLLHLAWHPTTNLIACANGNS 481 (487)
Q Consensus 434 ~l~~g~~~~~~~w~~~-------~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~ 481 (487)
|+.+..+...+|... ........+..+|.++.|.|-+..|-+|-..|
T Consensus 348 -LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 348 -LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred -eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 666666666999221 11122224556999999999999888776554
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.4e-15 Score=132.81 Aligned_cols=201 Identities=15% Similarity=0.218 Sum_probs=143.7
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (487)
Q Consensus 36 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (487)
.+++|+++|..|++|+.||++|||++..... +.....|. ..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------~l~e~~~~------------~e 188 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------ILEEIAHH------------AE 188 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---------------------------hhhhHhhc------------Cc
Confidence 6899999999999999999999999765543 34455666 78
Q ss_pred eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
|.++.| +|||+.|++-+.| ..+||+.+++........
T Consensus 189 V~DL~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~---------------------------------------- 225 (398)
T KOG0771|consen 189 VKDLDF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP---------------------------------------- 225 (398)
T ss_pred ccccee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC----------------------------------------
Confidence 999999 6899999999999 899999999854332110
Q ss_pred eeeecccCCCceeEEEeCCCC---CE-EEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 196 TKVYPHAHDFNINSISNNSDC---ET-FVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~s~~~---~~-l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
.........+.|+.++ .+ +++ . .-+.|+.||+...... ..+. ..+.......|.+++.+++| +++
T Consensus 226 -----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~--~~~~~~~~~siSsl~VS~dG-kf~ 296 (398)
T KOG0771|consen 226 -----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR--LRKKIKRFKSISSLAVSDDG-KFL 296 (398)
T ss_pred -----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc--hhhhhhccCcceeEEEcCCC-cEE
Confidence 2234445667777665 22 222 3 5667777766533221 1110 11222234579999999999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCC
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM 343 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~ 343 (487)
+.|+.||.|.|++..+-+.. +..+. .|...|+.+.|+||.+++++- ++....+..+..
T Consensus 297 AlGT~dGsVai~~~~~lq~~----~~vk~------------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRL----QYVKE------------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeccCCcEEEEEeceeeee----Eeehh------------hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999876543 22222 357899999999999999975 457777776653
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=5.3e-13 Score=114.93 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=121.1
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.+|++. .++|+++-.+. |.|||+.+-+++.....
T Consensus 88 t~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t-------------------------------------- 124 (391)
T KOG2110|consen 88 TSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIET-------------------------------------- 124 (391)
T ss_pred CceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhc--------------------------------------
Confidence 669999983 45677765554 99999999876654211
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEE--e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
...+...+.++++++++.+++. + ..|.|.+||..+ -+.... +..|.+.+.+++|+++| .+||
T Consensus 125 ------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~-------I~aH~~~lAalafs~~G-~llA 189 (391)
T KOG2110|consen 125 ------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNT-------INAHKGPLAALAFSPDG-TLLA 189 (391)
T ss_pred ------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeE-------EEecCCceeEEEECCCC-CEEE
Confidence 1356666888888888889988 3 789999999984 333333 46899999999999999 9999
Q ss_pred EEeCCCe-EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC
Q 011368 271 YSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 343 (487)
Q Consensus 271 ~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~ 343 (487)
++++.|+ ||++.+.+++.+ ..|.. .. ....|.+++|+|++++|++.++ ++|.+|.+..
T Consensus 190 TASeKGTVIRVf~v~~G~kl----~eFRR-G~----------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 190 TASEKGTVIRVFSVPEGQKL----YEFRR-GT----------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EeccCceEEEEEEcCCccEe----eeeeC-Cc----------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9999885 799999998866 44443 00 0257899999999999998876 9999999864
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=9.2e-14 Score=136.65 Aligned_cols=242 Identities=14% Similarity=0.189 Sum_probs=160.5
Q ss_pred CCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeec
Q 011368 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (487)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
+.|....++.+..|. ..|..++.+ ++.+.+|++|+.||+|++|+...-.....
T Consensus 1034 W~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------------- 1086 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG-------------- 1086 (1431)
T ss_pred CCccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc--------------
Confidence 467778888888888 888899986 46668999999999999999875321100
Q ss_pred cccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC-CceeEEeec
Q 011368 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDM 244 (487)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~-~~~~~~~~~ 244 (487)
..++..++ .....++.++...+++..+|.+ .||.|.+.+++.. .........
T Consensus 1087 -------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1087 -------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred -------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence 01122222 3356788999999999999999 9999999999842 111111101
Q ss_pred CCCCCCCCCCcEEEEEEecCCCC-EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368 245 KPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 323 (487)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~ 323 (487)
...........|..-+|...... .++.+..-+.|..||++.....- ..+. ..-.+.|++++.+|
T Consensus 1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w----~lk~-----------~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW----RLKN-----------QLRHGLVTSIVIDP 1205 (1431)
T ss_pred ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH----hhhc-----------CccccceeEEEecC
Confidence 11122222233344444433224 78888889999999999865331 1111 11147899999999
Q ss_pred CCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC---CCCEEEEEc--CCCcEEEE
Q 011368 324 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGS--YSNLLRIF 397 (487)
Q Consensus 324 ~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~sg~--~dg~i~iw 397 (487)
-+.+++.|.. |.+.+||++. +.++..+...... .+ +.+...| .....++++ ..+.|.+|
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~-----------~i---~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARA-----------PI---RHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred CceEEEEecCCceEEEEEeec-CceeecccCcccC-----------Cc---ceEEeeccCCCCceEEEecccCCCceeee
Confidence 9999999975 9999999997 7777776543321 11 3444444 334555544 47899999
Q ss_pred EeCCCCceeEEEecc
Q 011368 398 SHGVGSAGGITVEAG 412 (487)
Q Consensus 398 d~~~~~~~~~~~~~~ 412 (487)
++.+| .....+...
T Consensus 1271 n~~~g-~~~~vl~~s 1284 (1431)
T KOG1240|consen 1271 NMETG-LRQTVLWAS 1284 (1431)
T ss_pred ecccC-cceEEEEcC
Confidence 99998 555555554
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.5e-14 Score=129.66 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=127.2
Q ss_pred ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC-----cEEEEEEecCCCCEEEEEeC
Q 011368 201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-----VITSAEFHPIYCNLLAYSSS 274 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~~ 274 (487)
....+.++++..++...+|++| .+|.|-.||.+. ...+..++... .+..|.+ .|+++.|+-+| -.+++|+.
T Consensus 172 ~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts 248 (703)
T KOG2321|consen 172 ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTS 248 (703)
T ss_pred ccccccceeeeecCccceEEecccCceEEEecchh-hhhheeeeccc-ccCCCccccccCcceEEEecCCc-eeEEeecc
Confidence 4456889999999999999999 899999999994 44444443332 2333433 49999999998 99999999
Q ss_pred CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEeCCeEEEEeCCCCCceeeeee
Q 011368 275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 352 (487)
+|.+.|||++..+.+ ....| +..-+|..+.|.+. +..+++.+...++|||-.+ +++...+.
T Consensus 249 ~G~v~iyDLRa~~pl-----~~kdh-----------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiE 311 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPL-----LVKDH-----------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIE 311 (703)
T ss_pred CCcEEEEEcccCCce-----eeccc-----------CCccceeeecccccCCCceEEecchHHhhhccccc-CCceeecc
Confidence 999999999998754 22232 12457889999765 4567777769999999987 77777766
Q ss_pred cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
..... ..+|+-|++.++.++-.++.+..|=+..-
T Consensus 312 pt~~l----------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 312 PTSDL----------------NDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ccCCc----------------CceeeecCCceEEEecCCCcceeEEcccc
Confidence 54432 48999999999999999998888777654
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4e-15 Score=133.99 Aligned_cols=246 Identities=14% Similarity=0.141 Sum_probs=161.2
Q ss_pred eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (487)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
.++.||+ +.|++++| +.+|.+|++|+.|-.+.|||....++....
T Consensus 44 ~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~KllhsI--------------------- 88 (758)
T KOG1310|consen 44 AELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHSI--------------------- 88 (758)
T ss_pred hhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeeee---------------------
Confidence 5688999 99999999 689999999999999999999866654432
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCcee--EEeecCCCCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCF--NIVDMKPSNM 249 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~--~~~~~~~~~~ 249 (487)
-.+|...|.++.|-| +.+.+++| .|..|+++|+...+.-- .-.....+.+
T Consensus 89 -------------------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~ 143 (758)
T KOG1310|consen 89 -------------------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW 143 (758)
T ss_pred -------------------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh
Confidence 279999999999988 56788888 99999999998421100 0000111345
Q ss_pred CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EE
Q 011368 250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL 328 (487)
Q Consensus 250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l 328 (487)
..|...|..++..|++|..+.++++||+|+-+|++....+..... . +..-......--...++.++|... +|
T Consensus 144 ~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~---~----~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 144 SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED---C----PSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc---c----cHHHHHhchhhheeeeeeecCCCCceE
Confidence 678888999999999999999999999999999998554321100 0 000000011123567899998765 56
Q ss_pred EEE-eCCeEEEEeCCCCCceeeeeeccccc-------cccccccc--CCC-----CcceeeEEEEcCCCCEEEEEcCCCc
Q 011368 329 LSR-DYMNLKLWDIRMDSTPVATFKIHEHL-------RPKLCDLY--NND-----SIFDKFECSVSGDGLHFATGSYSNL 393 (487)
Q Consensus 329 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~-----~~~~~~~~~~s~d~~~l~sg~~dg~ 393 (487)
+.| ++-..++||.+...+....-..+... +...++.. ..+ .+...+-+.|+|+|.-|+..-..-.
T Consensus 217 aVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEh 296 (758)
T KOG1310|consen 217 AVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEH 296 (758)
T ss_pred EecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeE
Confidence 666 56899999954311111110000000 00011000 000 1112357899999987776555558
Q ss_pred EEEEEeCCCCceeE
Q 011368 394 LRIFSHGVGSAGGI 407 (487)
Q Consensus 394 i~iwd~~~~~~~~~ 407 (487)
|+++|+..++....
T Consensus 297 VYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 297 VYLFDVNEDKSPTP 310 (758)
T ss_pred EEEEeecCCCCcee
Confidence 99999998765433
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.2e-13 Score=128.87 Aligned_cols=214 Identities=13% Similarity=0.142 Sum_probs=134.3
Q ss_pred cceeEEEEEecCCCcEEEEEeCC---CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+.+.+| +|||+.|+..+.+ ..|.+||+.+++...+
T Consensus 196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-------------------------------------- 235 (427)
T PRK02889 196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-------------------------------------- 235 (427)
T ss_pred CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 67889999 6789988877643 3599999988865433
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
....+.+...+|+|||+.|+. . .++...||.++....... .+..+........|+|+| +.
T Consensus 236 ----------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~ 297 (427)
T PRK02889 236 ----------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RS 297 (427)
T ss_pred ----------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CE
Confidence 223344568899999998875 4 677766665542222222 233344445678899999 77
Q ss_pred EEEEeC-CCeEEEEEcc--CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEEeC
Q 011368 269 LAYSSS-RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDI 341 (487)
Q Consensus 269 l~~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iwd~ 341 (487)
|+..+. +|...||.+. ++.. +.+..+ ........|+|||++|+..+ + ..|.+||+
T Consensus 298 l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~~-------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 298 IYFTSDRGGAPQIYRMPASGGAA-----QRVTFT-------------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred EEEEecCCCCcEEEEEECCCCce-----EEEecC-------------CCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 776654 5666777654 3321 111110 12334678999999998654 2 36999999
Q ss_pred CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC---cEEEEEeCCCCceeEEEeccCCcccc
Q 011368 342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRK 418 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~ 418 (487)
.+ +... .+...... ....|+|||++|+.++.++ .+++.++. + .....+..+.+.+..
T Consensus 360 ~~-g~~~-~lt~~~~~----------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~ 419 (427)
T PRK02889 360 AT-GQVT-ALTDTTRD----------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVRE 419 (427)
T ss_pred CC-CCeE-EccCCCCc----------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCC
Confidence 76 4432 33222111 2689999999998877543 35555553 3 344555556666677
Q ss_pred ceEee
Q 011368 419 PILQA 423 (487)
Q Consensus 419 ~~~~~ 423 (487)
.+++|
T Consensus 420 p~wsp 424 (427)
T PRK02889 420 PSWGP 424 (427)
T ss_pred CccCC
Confidence 77766
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.8e-13 Score=128.36 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=135.3
Q ss_pred cceeEEEEEecCCCcEEEEEe---CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+...+| +|||+.|+..+ .+..|.+||+.+++...+
T Consensus 202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-------------------------------------- 241 (435)
T PRK05137 202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV-------------------------------------- 241 (435)
T ss_pred CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence 77999999 67899888875 346899999988765433
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
..+.+.+...+|+|||+.|+.. .++ .|++||+.+ +.... +..+........|+|+|
T Consensus 242 ----------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~~~~~--------Lt~~~~~~~~~~~spDG- 301 (435)
T PRK05137 242 ----------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-GTTTR--------LTDSPAIDTSPSYSPDG- 301 (435)
T ss_pred ----------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC-CceEE--------ccCCCCccCceeEcCCC-
Confidence 3445567788999999987653 454 477778873 33322 23344556778999999
Q ss_pred CEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEE
Q 011368 267 NLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLW 339 (487)
Q Consensus 267 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iw 339 (487)
+.|+..+. +| .|.++|+..+.. +.+.. +...+....|+|||++|+... + ..|.+|
T Consensus 302 ~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~-------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 302 SQIVFESDRSGSPQLYVMNADGSNP-----RRISF-------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred CEEEEEECCCCCCeEEEEECCCCCe-----EEeec-------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 87877764 33 677778776542 22221 023466788999999998653 2 468888
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC------CcEEEEEeCCCCceeEEEeccC
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGGITVEAGK 413 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~ 413 (487)
|+.. + ....+..... . ..+.|+|||++|+..+.+ ..++++++..+.. ..+.. .
T Consensus 364 d~~~-~-~~~~lt~~~~-~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l~~-~ 422 (435)
T PRK05137 364 KPDG-S-GERILTSGFL-V---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE--REVPT-P 422 (435)
T ss_pred ECCC-C-ceEeccCCCC-C---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce--EEccC-C
Confidence 8754 2 2333322111 1 378999999998765543 2577778765533 23322 2
Q ss_pred CccccceEee
Q 011368 414 NENRKPILQA 423 (487)
Q Consensus 414 ~~v~~~~~~~ 423 (487)
..+...+++|
T Consensus 423 ~~~~~p~Wsp 432 (435)
T PRK05137 423 GDASDPAWSP 432 (435)
T ss_pred CCccCcccCC
Confidence 2344555554
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7e-15 Score=130.61 Aligned_cols=305 Identities=12% Similarity=0.107 Sum_probs=214.0
Q ss_pred ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (487)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
......|..|. +.|+.|.| ...|..|++++.|..|.+||...+..+..
T Consensus 132 ~~l~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------------------ 179 (559)
T KOG1334|consen 132 LRLQKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLS------------------ 179 (559)
T ss_pred hhhhhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCcccc------------------
Confidence 34556678888 99999999 57899999999999999999988764332
Q ss_pred cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC
Q 011368 171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 247 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 247 (487)
+..+|...|....|-| +.+.|+++ .||.+++=.+...+.+..+ .
T Consensus 180 ----------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t-----~ 226 (559)
T KOG1334|consen 180 ----------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT-----K 226 (559)
T ss_pred ----------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc-----e
Confidence 2478888888888877 46678887 9999999887755554433 2
Q ss_pred CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-
Q 011368 248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ- 326 (487)
Q Consensus 248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~- 326 (487)
.+..|.+.|.-++..|+.+..|++++.|+.+.-+|++.+...... .+-+.+ . .-.-....++..|...
T Consensus 227 rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~-~cr~~~---~-------~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 227 RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF-VCREAD---E-------KERVGLYTIAVDPRNTN 295 (559)
T ss_pred ecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee-eeeccC---C-------ccceeeeeEecCCCCcc
Confidence 456799999999999999999999999999999999987533111 111110 0 0012577889998766
Q ss_pred EEEEE-eCCeEEEEeCCCCCc-----eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 327 HLLSR-DYMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 327 ~l~s~-~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
.++++ .|..+++||.+.-.+ .+..+..+.. .. +-...|++++++.++.-|.+.-.|-.|+++.-.
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl--------~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL--------VE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccc--------cc-cCcccceeEEecCCccceeeeecccceEEeccc
Confidence 45554 579999999875211 1222222211 11 333356899999877777777777789999554
Q ss_pred CCC------------ceeEEEeccCCc--cccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeE
Q 011368 401 VGS------------AGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLL 463 (487)
Q Consensus 401 ~~~------------~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~ 463 (487)
.+. .....+++|.+. |..+-|-.. ...+ +++|+..|. .+| +.++.+..+.+-..-|+
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEy-----VvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEY-----VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccce-----EEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 321 123347788654 556666543 3344 678887777 999 55556666665555889
Q ss_pred EEEEcCCCCEEEEec-CCeEEEEe
Q 011368 464 HLAWHPTTNLIACAN-GNSLFFHY 486 (487)
Q Consensus 464 ~~~~spd~~~la~~s-~~~~~i~~ 486 (487)
++.=||--++||+++ +-.+.||.
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ccCCCCCCchhhccCCccceeeec
Confidence 999999999999888 44599996
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.3e-13 Score=129.69 Aligned_cols=215 Identities=13% Similarity=0.099 Sum_probs=135.6
Q ss_pred ccCCCceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE-eCC
Q 011368 201 HAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSR 275 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~d 275 (487)
..+...+...+|+|||+.|+.. .+..|++|++.+ +....+ ..+.++ +..+.|+|+| +.|+.. +.+
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~l-----~~~~~~---~~~~~~SPDG-~~La~~~~~~ 264 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQV-----ASFPRH---NGAPAFSPDG-SKLAFALSKT 264 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEEc-----cCCCCC---cCCeEECCCC-CEEEEEEcCC
Confidence 3456678999999999998864 245799999984 333222 122233 4468999999 777655 445
Q ss_pred C--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--Ce--EEEEeCCCCCceee
Q 011368 276 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN--LKLWDIRMDSTPVA 349 (487)
Q Consensus 276 g--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~--i~iwd~~~~~~~~~ 349 (487)
| .|.+||+.+++.. .+.. +...+....|+|||+.|+..++ +. |+++|+.. + ...
T Consensus 265 g~~~I~~~d~~tg~~~-----~lt~-------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g-~~~ 324 (429)
T PRK03629 265 GSLNLYVMDLASGQIR-----QVTD-------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-G-APQ 324 (429)
T ss_pred CCcEEEEEECCCCCEE-----EccC-------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-C-CeE
Confidence 4 5888999876532 2222 1245678899999998887653 44 44446543 3 233
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---CcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
.+....... ....|+|||++|+..+.+ ..|++||+.++.... +... .......++| +
T Consensus 325 ~lt~~~~~~---------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~--Lt~~-~~~~~p~~Sp--D 384 (429)
T PRK03629 325 RITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--LTDT-FLDETPSIAP--N 384 (429)
T ss_pred EeecCCCCc---------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE--eCCC-CCCCCceECC--C
Confidence 333222111 368999999999876543 358889998875432 3222 2234567776 7
Q ss_pred cccccccceeeecccce--ecC--CC-CCccccccccCCCeEEEEEcCC
Q 011368 427 ARRSSLSNLTRGLYRQA--HEN--SS-SGHHELSYNLSSKLLHLAWHPT 470 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~--~~w--~~-~~~~~~~~~~~~~v~~~~~spd 470 (487)
++. ++..+.++. .++ .. +.....+..+...+...+|+|-
T Consensus 385 G~~-----i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 385 GTM-----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCE-----EEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 776 777666654 333 33 3344455567788888999983
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=9.3e-14 Score=116.49 Aligned_cols=148 Identities=20% Similarity=0.275 Sum_probs=104.2
Q ss_pred eEEEeCCCCCEEEEe-c---C-------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE--eC
Q 011368 208 NSISNNSDCETFVSA-D---D-------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SS 274 (487)
Q Consensus 208 ~~i~~s~~~~~l~s~-~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~--~~ 274 (487)
..+.|+|+|+.|+.- . | +...+|.++..+.....+ .+. ..+.|.+++|+|+| +.|++. ..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccC
Confidence 467899999988774 3 1 335566664333333332 111 33469999999999 776554 35
Q ss_pred CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----CCeEEEEeCCCCCceeee
Q 011368 275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~ 350 (487)
++.|.+||++... + ..+.. ..+..+.|+|+|++|++++ .|.|.+||.+. .+.+..
T Consensus 82 ~~~v~lyd~~~~~-i----~~~~~---------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 82 PAKVTLYDVKGKK-I----FSFGT---------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred CcccEEEcCcccE-e----EeecC---------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 6799999997322 2 33332 5678999999999999864 27899999985 666655
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC------CCcEEEEEeC
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG 400 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~------dg~i~iwd~~ 400 (487)
...... +.++|||||++|++++. |+.++||+..
T Consensus 141 ~~~~~~-----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 141 FEHSDA-----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cccCcE-----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 543221 58999999999998874 7889999985
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=5.2e-12 Score=106.82 Aligned_cols=229 Identities=15% Similarity=0.200 Sum_probs=151.2
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccc-----------------cccCCCcceeEee
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF-----------------TSTSHPEYRYKTE 96 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 96 (487)
....++|+.|..-+++|..+| .+||+.+--++ ...+.+...+-. ..+.+|+.++ ..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke-----~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkv-iI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKE-----SASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKV-II 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhh-----hhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceE-EE
Confidence 355699999999888887665 89999875433 122222222211 1123333332 22
Q ss_pred ecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-ceeEeeecCCCCceeeeecccccccccc
Q 011368 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (487)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (487)
+..+. .-.+..+.+..+|.+|.+. . .+|++. ..+.|.||...+. +.......
T Consensus 80 WDD~k--~~~i~el~f~~~I~~V~l~--r--~riVvv-l~~~I~VytF~~n~k~l~~~et-------------------- 132 (346)
T KOG2111|consen 80 WDDLK--ERCIIELSFNSEIKAVKLR--R--DRIVVV-LENKIYVYTFPDNPKLLHVIET-------------------- 132 (346)
T ss_pred Eeccc--CcEEEEEEeccceeeEEEc--C--CeEEEE-ecCeEEEEEcCCChhheeeeec--------------------
Confidence 33333 2346667777889999983 3 356655 4568999998743 22222110
Q ss_pred ccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCC
Q 011368 176 EHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 253 (487)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 253 (487)
......+.+++-+.+..+||. | .-|.|+|-|+.....- .+..+.+|.
T Consensus 133 -------------------------~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~ 181 (346)
T KOG2111|consen 133 -------------------------RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHD 181 (346)
T ss_pred -------------------------ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------CceEEEccc
Confidence 122333445544445556665 5 7899999999854431 112357899
Q ss_pred CcEEEEEEecCCCCEEEEEeCCCe-EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 254 EVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 254 ~~v~~v~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
+.|.|++.+-+| .++|++|..|+ |||||..+++.+ ..+.. . -....|.+|+|||++.+|++++
T Consensus 182 s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l----~E~RR-G----------~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 182 SDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL----QELRR-G----------VDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred CceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe----eeeec-C----------CchheEEEEEeCCCccEEEEEc
Confidence 999999999999 99999999986 899999999876 33332 0 0136899999999999999999
Q ss_pred C-CeEEEEeCCC
Q 011368 333 Y-MNLKLWDIRM 343 (487)
Q Consensus 333 d-~~i~iwd~~~ 343 (487)
| |++.|+.++.
T Consensus 246 dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 246 DKGTLHIFSLRD 257 (346)
T ss_pred CCCeEEEEEeec
Confidence 8 9999999875
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-12 Score=111.96 Aligned_cols=265 Identities=13% Similarity=0.125 Sum_probs=158.6
Q ss_pred cCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
...|+|++|-|.+ .-|+.|+.. -|.||..+..-.. .+.++.... ..-.+..-.||
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~------~r~~~~~s~-------~~~qvl~~pgh---------- 195 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA------NRNIRMMST-------HHLQVLQDPGH---------- 195 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc------ccccccccc-------cchhheeCCCC----------
Confidence 4579999999955 678888875 4999987643221 000000000 00011222333
Q ss_pred ccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|++++| ++||..+++++ .|..|.|||..++....+.
T Consensus 196 ---~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------------------------ 234 (445)
T KOG2139|consen 196 ---NPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQKIPLI------------------------------------ 234 (445)
T ss_pred ---ceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCccccc------------------------------------
Confidence 67999999 68899999987 6789999999998866542
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
....+.+.-+.||||+.+|+++ -|+..++|+......+.+ ..-..+.|....|+|.|..+
T Consensus 235 -----------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--------w~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 235 -----------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--------WILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred -----------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc--------eeccCCceeeeeecCCCCEE
Confidence 2445678899999999999999 999999997653322211 12233489999999999444
Q ss_pred EEEEeCCCeEEEEEccCCccccccc--eeeccccc--ccCccccccc---cccceeEEEEcCCCCEEEEEeC--------
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSA--RILRDAAE--SHGSKSFFTE---IIASISDIKFANDGQHLLSRDY-------- 333 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~h~~--~~~~~~~~~~---~~~~v~~v~~s~~~~~l~s~~d-------- 333 (487)
|++.+.. -++|.+.......... .....|.. .........+ -.+.+.+++|.|.|.+|++.-.
T Consensus 296 Lf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 296 LFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 4444443 3455544322110000 00000000 0000000111 1367899999999999997421
Q ss_pred -CeEEEEeCCCCCceeeeee-----cccccccccccccCCCCcceeeEEEEcC---CCCEEEEEcCCCcEEEEEeC
Q 011368 334 -MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 334 -~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~sg~~dg~i~iwd~~ 400 (487)
..|.+||.+. . +...+. +.+.+ --++|+| ++.+|..+=..|.+.-|++.
T Consensus 374 k~~i~~fdtr~-s-p~vels~cg~i~ge~P----------------~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 374 KLHISRFDTRK-S-PPVELSYCGMIGGEYP----------------AYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhcccc-c-CceEEEecccccCCCC----------------ceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 4577888874 3 322222 11222 1466666 56777777667777777664
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.7e-13 Score=128.21 Aligned_cols=212 Identities=14% Similarity=0.103 Sum_probs=135.1
Q ss_pred cceeEEEEEecCCCcEEEEEeC---CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+...+| +|+|+.|+..+. +..|.+||+.+++...+
T Consensus 204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-------------------------------------- 243 (433)
T PRK04922 204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELV-------------------------------------- 243 (433)
T ss_pred CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 67889999 688999888763 34699999988765433
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
....+...+.+|+|||+.|+.. .++ .|++||+.++ .... +..+......++|+|+|
T Consensus 244 ----------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-~~~~--------lt~~~~~~~~~~~spDG- 303 (433)
T PRK04922 244 ----------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-QLTR--------LTNHFGIDTEPTWAPDG- 303 (433)
T ss_pred ----------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC-CeEE--------CccCCCCccceEECCCC-
Confidence 2233344578999999987643 444 6999999843 3322 23344445678999999
Q ss_pred CEEEEEeC-CCe--EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEE
Q 011368 267 NLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLW 339 (487)
Q Consensus 267 ~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iw 339 (487)
+.|+..+. +|. |.++|+.+++. +.+..+ ......++|+|||++|+..+ + ..|.+|
T Consensus 304 ~~l~f~sd~~g~~~iy~~dl~~g~~-----~~lt~~-------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 304 KSIYFTSDRGGRPQIYRVAASGGSA-----ERLTFQ-------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred CEEEEEECCCCCceEEEEECCCCCe-----EEeecC-------------CCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 87777664 444 55566655542 111110 12345689999999998653 2 369999
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---CcEEEEEeCCCCceeEEEeccCCcc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
|+.+ +... .+..... . ....|+|||++|+..+.+ +.|+++++..+ ....+..+.+.+
T Consensus 366 d~~~-g~~~-~Lt~~~~-~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~ 425 (433)
T PRK04922 366 DLST-GSVR-TLTPGSL-D---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSADGEV 425 (433)
T ss_pred ECCC-CCeE-ECCCCCC-C---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccCCCCC
Confidence 9975 4433 3332111 1 267899999998876653 35777777533 344454555555
Q ss_pred ccceEee
Q 011368 417 RKPILQA 423 (487)
Q Consensus 417 ~~~~~~~ 423 (487)
..++++|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 5566554
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=8.6e-12 Score=105.51 Aligned_cols=249 Identities=13% Similarity=0.159 Sum_probs=155.4
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCC-CCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
....+++| +.|...++.|..+| .+||+.+--+......... .-.+.-+.|....-.++..+..+.........||.
T Consensus 6 ~~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 44566899 57777888777665 9999987522111111100 01111111222222222222222222333444876
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.+...........+|.++.+.+ ..|++.-.+.|++|.....-+.+..++. ......+.++.-+.+. .+||.-
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et-----~~NPkGlC~~~~~~~k-~~LafP 154 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIET-----RSNPKGLCSLCPTSNK-SLLAFP 154 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeec-----ccCCCceEeecCCCCc-eEEEcC
Confidence 5444443345678899999985 4777777889999998844444433311 1112234444433333 455543
Q ss_pred e-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-Ce-EEEEeCCCCCceee
Q 011368 273 S-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN-LKLWDIRMDSTPVA 349 (487)
Q Consensus 273 ~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~-i~iwd~~~~~~~~~ 349 (487)
+ .-|.|+|-|+...+.- ..... ..|.+.|.+++.+.+|..+|+++. |+ |||||..+ +..+.
T Consensus 155 g~k~GqvQi~dL~~~~~~--~p~~I-------------~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~ 218 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPN--APSII-------------NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQ 218 (346)
T ss_pred CCccceEEEEEhhhcCcC--CceEE-------------EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEee
Confidence 3 4689999999875421 11333 446899999999999999999975 55 79999997 88888
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+++...... ++.+++||||+.+||++|+-|+++|+.++..
T Consensus 219 E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 219 ELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 887544322 2359999999999999999999999999864
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.7e-13 Score=127.16 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=132.0
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+.+++.. .+..+.
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-------------------------~l~~~~------- 239 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-------------------------VVANFK------- 239 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-------------------------EeecCC-------
Confidence 4567789999999999999887643 35999999877531 112222
Q ss_pred cccccccccceeEEEEEecCCCcEEE-EEeCCCcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
+.+...+| +|||+.|+ +.+.++...||.++ ++....
T Consensus 240 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~------------------------------- 278 (427)
T PRK02889 240 --------GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRR------------------------------- 278 (427)
T ss_pred --------CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEE-------------------------------
Confidence 33567889 68888876 45778877777654 333222
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
+..+........|+|||+.|+.. .++...+|.+...+...+.+ ...+ ......+
T Consensus 279 -----------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-----t~~g--~~~~~~~ 334 (427)
T PRK02889 279 -----------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-----TFTG--SYNTSPR 334 (427)
T ss_pred -----------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-----ecCC--CCcCceE
Confidence 13344455678899999988765 45666777654222222211 1121 2234578
Q ss_pred EecCCCCEEEEEeCCC---eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-C-
Q 011368 261 FHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M- 334 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~- 334 (487)
|+|+| ++|+..+.++ .|.+||+.+++. +.+.. ........|+|||++|+... + +
T Consensus 335 ~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~--------------~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 335 ISPDG-KLLAYISRVGGAFKLYVQDLATGQV-----TALTD--------------TTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred ECCCC-CEEEEEEccCCcEEEEEEECCCCCe-----EEccC--------------CCCccCceECCCCCEEEEEEecCCC
Confidence 99999 8888777654 699999987653 22222 12235679999999988764 2 3
Q ss_pred -eEEEEeCCCCCceeeeeecccc
Q 011368 335 -NLKLWDIRMDSTPVATFKIHEH 356 (487)
Q Consensus 335 -~i~iwd~~~~~~~~~~~~~~~~ 356 (487)
.+.+.++. +.....+..+.+
T Consensus 395 ~~l~~~~~~--g~~~~~l~~~~g 415 (427)
T PRK02889 395 SVLAAVSSD--GRIKQRLSVQGG 415 (427)
T ss_pred EEEEEEECC--CCceEEeecCCC
Confidence 35555653 555555554433
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5.3e-13 Score=127.86 Aligned_cols=207 Identities=13% Similarity=0.098 Sum_probs=132.7
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
...+...+.+.+|+|||+.|+..+.+ ..|.+|++.+++. ..+..+.
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----------------------------~~l~~~~--- 247 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----------------------------ELVASFR--- 247 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE----------------------------EEeccCC---
Confidence 34566789999999999999987633 4699999877643 1122222
Q ss_pred ccccccccccceeEEEEEecCCCcEEEE-EeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
+...+.+| +|+|+.++. .+.++ .|.+||+.+++...+
T Consensus 248 ---------g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l----------------------------- 287 (433)
T PRK04922 248 ---------GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL----------------------------- 287 (433)
T ss_pred ---------CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC-----------------------------
Confidence 33457789 678887754 45555 588999988765433
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCe--EEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 257 (487)
..+.......+|+|||+.|+.+ .++. |+++++.. +....+ +. ......
T Consensus 288 -------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~~~~l------t~--~g~~~~ 339 (433)
T PRK04922 288 -------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GSAERL------TF--QGNYNA 339 (433)
T ss_pred -------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCeEEe------ec--CCCCcc
Confidence 3344445678999999988775 4554 66666653 322222 11 122344
Q ss_pred EEEEecCCCCEEEEEeCCC---eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368 258 SAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 333 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d 333 (487)
.++|+|+| +.|+..+.++ .|.+||+.+++. +.+.. ........|+|||++|+..+ +
T Consensus 340 ~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~--------------~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 340 RASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTP--------------GSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CEEECCCC-CEEEEEECCCCceeEEEEECCCCCe-----EECCC--------------CCCCCCceECCCCCEEEEEEec
Confidence 68999999 8887765433 689999987653 22222 11234568999999887653 2
Q ss_pred ---CeEEEEeCCCCCceeeeeeccc
Q 011368 334 ---MNLKLWDIRMDSTPVATFKIHE 355 (487)
Q Consensus 334 ---~~i~iwd~~~~~~~~~~~~~~~ 355 (487)
..|.++++. +.....+..+.
T Consensus 400 ~g~~~L~~~~~~--g~~~~~l~~~~ 422 (433)
T PRK04922 400 GGRGVLAAVSTD--GRVRQRLVSAD 422 (433)
T ss_pred CCceEEEEEECC--CCceEEcccCC
Confidence 467777774 44555555443
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=1.4e-11 Score=113.94 Aligned_cols=321 Identities=12% Similarity=0.098 Sum_probs=172.6
Q ss_pred CEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368 45 DYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (487)
Q Consensus 45 ~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~ 123 (487)
+++ ++-..+|.|.|.|..+.+. +..+.... ..-..+.|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~---------------------------~~~i~~~~------------~~h~~~~~-- 44 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV---------------------------VARIPTGG------------APHAGLKF-- 44 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE---------------------------EEEEE-ST------------TEEEEEE---
T ss_pred cEEEEEecCCCEEEEEECCCCeE---------------------------EEEEcCCC------------CceeEEEe--
Confidence 344 4455789999999876653 45555432 22234556
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
++||+++++++.|+.|.++|+.+++..... .-
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i------------------------------------------------~~ 76 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLATGKVVATI------------------------------------------------KV 76 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTSSSEEEEE------------------------------------------------E-
T ss_pred cCCCCEEEEEcCCCeEEEEECCcccEEEEE------------------------------------------------ec
Confidence 789999999999999999999998866542 22
Q ss_pred CCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE-eCCCeEEE
Q 011368 204 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 280 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~i 280 (487)
.....++++++||++++++ ..+.+.++|.++. +.++.+.............+..+..+|.. ..++.. -+.+.|.+
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWV 154 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEE
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEE
Confidence 3346789999999999887 7999999999854 34444322211112244567888888888 545554 44588888
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeeeecccccc
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLR 358 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~ 358 (487)
.|....+.. ..+.+.. ........|+|+++|++++. .+.|-++|.++ ++.+..+.....+-
T Consensus 155 Vdy~d~~~~--~~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~ 217 (369)
T PF02239_consen 155 VDYSDPKNL--KVTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVALIDTGKKPH 217 (369)
T ss_dssp EETTTSSCE--EEEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBE
T ss_pred EEecccccc--ceeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-ceEEEEeecccccc
Confidence 887765322 1122222 34567899999999988764 38999999986 66665554322111
Q ss_pred c-ccccccCCCCcceeeEEEEc--CCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccce
Q 011368 359 P-KLCDLYNNDSIFDKFECSVS--GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 435 (487)
Q Consensus 359 ~-~~~~~~~~~~~~~~~~~~~s--~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 435 (487)
+ ....+.+.. ....|. ..+...++.-....+.+|+..+. +...++.....+ --+..+| +++. +
T Consensus 218 ~~~~~~~php~-----~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~~G~g-lFi~thP--~s~~-----v 283 (369)
T PF02239_consen 218 PGPGANFPHPG-----FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPTQGGG-LFIKTHP--DSRY-----V 283 (369)
T ss_dssp ETTEEEEEETT-----TEEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE-SSSS---EE--T--T-SE-----E
T ss_pred ccccccccCCC-----cceEEeeccccceecccccCCccccchhhcC-eEEEEEECCCCc-ceeecCC--CCcc-----E
Confidence 0 000001100 012222 22333322222235567777766 345556554443 3333344 4444 3
Q ss_pred eee----cccce-ecCCCCCccc-ccc--ccCCCeEEEEEcCCCCEEEEec--CC-eEEEEeC
Q 011368 436 TRG----LYRQA-HENSSSGHHE-LSY--NLSSKLLHLAWHPTTNLIACAN--GN-SLFFHYA 487 (487)
Q Consensus 436 ~~g----~~~~~-~~w~~~~~~~-~~~--~~~~~v~~~~~spd~~~la~~s--~~-~~~i~~~ 487 (487)
... ..... .+++...+.. ... ....++.++.|++||+.+-++. .+ .+.+|.+
T Consensus 284 wvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred EeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 333 22222 4553333221 111 2334599999999999766554 44 5888864
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=6.6e-13 Score=115.15 Aligned_cols=260 Identities=13% Similarity=0.136 Sum_probs=171.4
Q ss_pred ccCcEEEEEEcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 31 h~~~V~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
....|+.++|.-++ +.|...+.|..+........... +...-+.+.....
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~---------------------s~~~~~~~~~l~~------- 105 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS---------------------SSLDDAKTVSLGT------- 105 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccc---------------------ccccccccccccc-------
Confidence 35578888888665 34444446666776666554431 0000011222222
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
++|..++. .+ ..|++|-.+|.+.+|....+.....
T Consensus 106 -----~~I~gl~~---~d-g~Litc~~sG~l~~~~~k~~d~hss------------------------------------ 140 (412)
T KOG3881|consen 106 -----KSIKGLKL---AD-GTLITCVSSGNLQVRHDKSGDLHSS------------------------------------ 140 (412)
T ss_pred -----ccccchhh---cC-CEEEEEecCCcEEEEeccCCccccc------------------------------------
Confidence 67777776 33 4688888999999999986542210
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEE-e-cC--CeEEEEEccCCCceeEEeecCCCCCC-CCCCcEEEEEEec
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVS-A-DD--LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHP 263 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p 263 (487)
.... ..-..++..+.-++....|++ | .. ..+.+||++...+.+.--+.+...+. .-.-.++.+.|-|
T Consensus 141 ------~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 141 ------KLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred ------ccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 0000 122245666666665555554 6 66 78999999955333321111111111 0112456788887
Q ss_pred C--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEe
Q 011368 264 I--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD 340 (487)
Q Consensus 264 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd 340 (487)
. . ..||+++.-+.+|+||.+.++.. +..|.. -+.+++++...|.|+++++|.. +.+..||
T Consensus 213 g~~~-~~fat~T~~hqvR~YDt~~qRRP---V~~fd~-------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 213 GSPN-YKFATITRYHQVRLYDTRHQRRP---VAQFDF-------------LENPISSTGLTPSGNFIYTGNTKGQLAKFD 275 (412)
T ss_pred CCCC-ceEEEEecceeEEEecCcccCcc---eeEecc-------------ccCcceeeeecCCCcEEEEecccchhheec
Confidence 6 5 89999999999999999987643 234433 1568999999999999999976 9999999
Q ss_pred CCCCCceeee-eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 341 IRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
++. ++.... +++..+.+ +++..+|.+++|+++|-|..+||+|+++.+.
T Consensus 276 ~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 276 LRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 997 555444 77666644 5999999999999999999999999998533
No 230
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=5.6e-11 Score=102.92 Aligned_cols=291 Identities=11% Similarity=0.136 Sum_probs=185.3
Q ss_pred hhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEec---CCcEEEEEeeC--CcCCCCcccchhhhhcccccccc
Q 011368 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTST 86 (487)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (487)
..|++...-|+....+...+...++-|+|+|++++|.++.. +|.|.-|.++. ++.
T Consensus 19 ~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-------------------- 78 (346)
T COG2706 19 YVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-------------------- 78 (346)
T ss_pred EEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE--------------------
Confidence 44776666677777778888899999999999999998864 47788888764 332
Q ss_pred CCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-cceeEeeecCCCCceeee
Q 011368 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSE 164 (487)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 164 (487)
.++.....-. .+-..+++ ++++++++++. .-|.|.++-++. |.+......-...
T Consensus 79 -----t~ln~~~~~g------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~----- 134 (346)
T COG2706 79 -----TFLNRQTLPG------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT----- 134 (346)
T ss_pred -----EEeeccccCC------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC-----
Confidence 1111111111 23377888 68899998886 568999999865 4333221100000
Q ss_pred eccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEe
Q 011368 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV 242 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~ 242 (487)
+.. .. .......+....+.|+++++++. .--.|.+|++.. +.....
T Consensus 135 ----------------------------g~~-p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~- 182 (346)
T COG2706 135 ----------------------------GSG-PH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GKLTPA- 182 (346)
T ss_pred ----------------------------CCC-CC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-Cccccc-
Confidence 000 00 01112237889999999999997 566899999994 332211
Q ss_pred ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 321 (487)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~ 321 (487)
.+..+ ......+.+.|+|++ ++..+..+ +++|.+|......-. ...++.+...| .-|.+ ..+..+|..
T Consensus 183 --~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tlP---~dF~g-~~~~aaIhi 251 (346)
T COG2706 183 --DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTLP---EDFTG-TNWAAAIHI 251 (346)
T ss_pred --ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccCc---cccCC-CCceeEEEE
Confidence 11223 334556999999999 87777765 899999998874111 12222211111 11222 467889999
Q ss_pred cCCCCEEEEEeC--CeEEEEeCCCCCceeeeeecccc-cccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-CcEEEE
Q 011368 322 ANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIF 397 (487)
Q Consensus 322 s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~i~iw 397 (487)
++||++|.++.. ..|.+|.+...+..+..+..... .. + .+...|++.|++|+++..+ ..|.+|
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~----------~---PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ----------F---PRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc----------C---CccceeCCCCCEEEEEccCCCcEEEE
Confidence 999999999853 78999988754444433322111 10 0 1489999999999998865 568888
Q ss_pred EeCCC
Q 011368 398 SHGVG 402 (487)
Q Consensus 398 d~~~~ 402 (487)
.+...
T Consensus 319 ~~d~~ 323 (346)
T COG2706 319 ERDKE 323 (346)
T ss_pred EEcCC
Confidence 88754
No 231
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=3e-15 Score=141.13 Aligned_cols=278 Identities=17% Similarity=0.191 Sum_probs=201.5
Q ss_pred eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (487)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (487)
+.++.+.+|. ++|.|+.| ...|.++++|+.|..++||.++++.+...
T Consensus 181 k~ikrLlgH~------------naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs------------------- 227 (1113)
T KOG0644|consen 181 KNIKRLLGHR------------NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS------------------- 227 (1113)
T ss_pred HHHHHHHhhh------------hheeeeee--ccccceEeecCccceeeeeeccchhhhcc-------------------
Confidence 3455567777 89999999 67899999999999999999988876544
Q ss_pred ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368 172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 250 (487)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 250 (487)
..||.+.|+.++.+.+..+++++ .|..|++|.+..+ ..+. .+.
T Consensus 228 ----------------------------~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-~pvs-------vLr 271 (1113)
T KOG0644|consen 228 ----------------------------CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-APVS-------VLR 271 (1113)
T ss_pred ----------------------------CCCCccccchhccchhhhhhhhcccCceEEEEecCCC-chHH-------HHh
Confidence 38999999999999999899999 9999999999944 4443 468
Q ss_pred CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
+|.+.|++++|+|-. +.+.||++++||.+-.- ..+...+.. +. ...-+.++.|..++.-+++
T Consensus 272 ghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp~~------~~-~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRPLK------FT-EKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCCCC------cc-cccceeeeecccccccccc
Confidence 999999999999963 77889999999998211 111110000 00 0245677788888888888
Q ss_pred Ee-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEE
Q 011368 331 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGIT 408 (487)
Q Consensus 331 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~ 408 (487)
++ ++.-..|.+.. +..+... .+ -+.++.| ..+.+++-.+-.+.+|++.+| ...+.
T Consensus 334 gs~d~ea~n~e~~~-------l~~~~~~-----------li----f~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~ 390 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQ-------LAWRSNL-----------LI----FVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHN 390 (1113)
T ss_pred ccCCcccccchhhH-------hhhhccc-----------eE----EEeccccccccceeeeeeeEeeeeecccc-hhhhh
Confidence 86 47777776642 1111110 00 1122222 245667777889999999998 55888
Q ss_pred EeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccc--c-ccccCCCeEEEEEcCCCCEEEEec-CCeEE
Q 011368 409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE--L-SYNLSSKLLHLAWHPTTNLIACAN-GNSLF 483 (487)
Q Consensus 409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~--~-~~~~~~~v~~~~~spd~~~la~~s-~~~~~ 483 (487)
+.+|...+..+.+.|. +.++ ..+++.|++ .+|+..+-.. . ..+ ...+.+-+||+||..++... .+.+|
T Consensus 391 l~ghsd~~yvLd~Hpf-n~ri-----~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~ 463 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPF-NPRI-----AMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLY 463 (1113)
T ss_pred hcccccceeeeeecCC-CcHh-----hhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceE
Confidence 9999999999999986 5565 788999999 9995433222 1 134 44566889999999988666 55577
Q ss_pred EEe
Q 011368 484 FHY 486 (487)
Q Consensus 484 i~~ 486 (487)
|+.
T Consensus 464 i~g 466 (1113)
T KOG0644|consen 464 ILG 466 (1113)
T ss_pred Eec
Confidence 764
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=3e-13 Score=121.81 Aligned_cols=190 Identities=13% Similarity=0.047 Sum_probs=131.9
Q ss_pred CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcc---
Q 011368 213 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--- 288 (487)
Q Consensus 213 s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--- 288 (487)
.|.+--+..| .-|.|.+.|... ....+++... ..-....|+|+.|-|.+...++++-.+|.+.+||..-...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne~---r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEE---RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhhc---ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 4567788888 899999988773 2222211110 1112367999999998878889999999999998743110
Q ss_pred -ccc---cceeeccccc----ccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccc
Q 011368 289 -CDH---SARILRDAAE----SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP 359 (487)
Q Consensus 289 -~~~---~~~~~~~h~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~ 359 (487)
... .-..|..|.. ...+......-++.|...+|+|||++||+.+ ||.+||||..+ .+.+..++.--+..
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL- 335 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL- 335 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence 000 0001111100 0011111112245889999999999999875 79999999987 66666665443322
Q ss_pred ccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 360 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
.+++|||||+||++|++|-.|.||.+..+ ..+..-++|+.+|..++|-|
T Consensus 336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --------------EEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 59999999999999999999999999876 56788899999999999986
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.6e-11 Score=110.35 Aligned_cols=278 Identities=10% Similarity=0.098 Sum_probs=158.6
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+.+..++|++|+++|.+. +..++|++..+.... +....
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~--------------------------lt~~~------------- 73 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV--------------------------LCVEL------------- 73 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE--------------------------EEecc-------------
Confidence 34578889999999998875 568999998766321 11111
Q ss_pred cccceeEEEEEecCCCcEEEEE-----eC-----CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 112 IEEKINRVRWCAAPNGSMFILS-----TN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~-----~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
..+.++.| +|-+.+|.+- .. .-.+++|++.++............. .+..|...+........+.-
T Consensus 74 --~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev 148 (566)
T KOG2315|consen 74 --KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEV 148 (566)
T ss_pred --ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcceE
Confidence 24688888 5677787762 12 2457799998843322211111110 01111111111111111110
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCC--CCEEEE---e---cCCeEEEEEccCCCceeEEeecCCCCCCCCC
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSD--CETFVS---A---DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 253 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s---~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 253 (487)
.. ++........-.-|...|..+.++|. ...+|+ + .-+.++||.....+... .+. ..++. .
T Consensus 149 ~f------~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-~~a--~ksFF--k 217 (566)
T KOG2315|consen 149 QF------YDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-PVA--NKSFF--K 217 (566)
T ss_pred EE------EecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-hhh--hcccc--c
Confidence 00 11111111111335677888889885 344554 1 34579999877322211 000 00111 1
Q ss_pred CcEEEEEEecCCCCEEEEEeC--C---------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 254 EVITSAEFHPIYCNLLAYSSS--R---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 254 ~~v~~v~~~p~~~~~l~~~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
..-..+.|++-|..+|+.++. | .++++.++...... -.+.. .++|.++.|+
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~----V~L~k--------------~GPVhdv~W~ 279 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS----VPLLK--------------EGPVHDVTWS 279 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE----EecCC--------------CCCceEEEEC
Confidence 122457788877444444433 2 36777777632221 22222 5899999999
Q ss_pred CCCCEEEEE-eC--CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---CcEEE
Q 011368 323 NDGQHLLSR-DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRI 396 (487)
Q Consensus 323 ~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g~i~i 396 (487)
|+|+-++++ +. -.+.|||++ +.++..+..... .++-|+|.|++|+.+|-+ |.|-|
T Consensus 280 ~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~egpR-----------------N~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 280 PSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEGPR-----------------NTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCCEEEEEEecccceEEEEcCC--CCEeEeCCCCCc-----------------cceEECCCCCEEEEeecCCCCCceEE
Confidence 999888765 33 899999997 677766653332 489999999999988765 78999
Q ss_pred EEeCCC
Q 011368 397 FSHGVG 402 (487)
Q Consensus 397 wd~~~~ 402 (487)
||+.+.
T Consensus 341 wDv~n~ 346 (566)
T KOG2315|consen 341 WDVPNR 346 (566)
T ss_pred Eeccch
Confidence 999985
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=2.2e-12 Score=119.20 Aligned_cols=291 Identities=12% Similarity=0.098 Sum_probs=157.5
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (487)
Q Consensus 36 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (487)
..+.|+|||+++++++.||.|.++|+.+.+. +.+++.- ..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---------------------------v~~i~~G-------------~~ 79 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV---------------------------VATIKVG-------------GN 79 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE---------------------------EEEEE-S-------------SE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE---------------------------EEEEecC-------------CC
Confidence 4578999999999999999999999987764 3444432 34
Q ss_pred eeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEeeecC------CCCceeeeeccccccccccccCCCCcceeeee
Q 011368 116 INRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMD------HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
...+++ ++||+++++++ .++.+.++|..+.+..+..... ..+.+..+...+....++.......... ..
T Consensus 80 ~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~--vV 155 (369)
T PF02239_consen 80 PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIW--VV 155 (369)
T ss_dssp EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEE--EE
T ss_pred cceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEE--EE
Confidence 677888 68999988775 7899999999987766553221 1223333333333222222222222111 11
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
.+.....................|+|++++++.+ .+..|-++|.++ ++....++.. -..|......+ -+|...
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~~i~~g---~~p~~~~~~~~-php~~g 230 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVALIDTG---KKPHPGPGANF-PHPGFG 230 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-S---SSBEETTEEEE-EETTTE
T ss_pred EeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc-ceEEEEeecc---ccccccccccc-cCCCcc
Confidence 2221222221112344567789999999988775 778999999984 4444444322 12233333332 122210
Q ss_pred ---------CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE----eC
Q 011368 267 ---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----DY 333 (487)
Q Consensus 267 ---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~----~d 333 (487)
...++.-....+.+||..+.+.+ +.+.. .+.-.-+..+|+++++.+. .+
T Consensus 231 ~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv----~~I~~--------------~G~glFi~thP~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 231 PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV----KTIPT--------------QGGGLFIKTHPDSRYVWVDTFLNPD 292 (369)
T ss_dssp EEEEEEBSSSSEEEEEE--TTT-STTTBTSEE----EEEE---------------SSSS--EE--TT-SEEEEE-TT-SS
T ss_pred eEEeeccccceecccccCCccccchhhcCeEE----EEEEC--------------CCCcceeecCCCCccEEeeccCCCC
Confidence 22212222234455666665544 44443 1233777889999999986 34
Q ss_pred -CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC--CcEEEEEeCCCCceeEEE
Q 011368 334 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--NLLRIFSHGVGSAGGITV 409 (487)
Q Consensus 334 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d--g~i~iwd~~~~~~~~~~~ 409 (487)
+.|.++|.++ .+.+..+....... +..+.|++||+++.....+ +.|.|||..+.+. ...+
T Consensus 293 ~~~v~viD~~t-l~~~~~i~~~~~~~--------------~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~-~~~i 355 (369)
T PF02239_consen 293 ADTVQVIDKKT-LKVVKTITPGPGKR--------------VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE-KKRI 355 (369)
T ss_dssp HT-EEEEECCG-TEEEE-HHHHHT----------------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE-EEEE
T ss_pred CceEEEEECcC-cceeEEEeccCCCc--------------EeccEECCCCCEEEEEEecCCCEEEEEECCCcEE-EEEE
Confidence 8999999987 55556655333310 1489999999987665544 3699999999844 4433
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=4.8e-10 Score=104.03 Aligned_cols=221 Identities=12% Similarity=0.140 Sum_probs=133.7
Q ss_pred cceeEEEEEecCCCcEEEEEeC----CCcEEEEEcccc--ceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~----d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.....+++ ++++++|.++.. ++.|..|++... ++..+..
T Consensus 37 ~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~--------------------------------- 81 (345)
T PF10282_consen 37 ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS--------------------------------- 81 (345)
T ss_dssp SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee---------------------------------
Confidence 44677888 578888888765 578999988764 4333211
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecC------CCCCCCCCCcEEEE
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSA 259 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~v 259 (487)
..........++++|++++|+++ .++.|.++++...+......... +...........++
T Consensus 82 ------------~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 82 ------------VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp ------------EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred ------------eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 01133445678999999999998 79999999999655544432110 11111233557899
Q ss_pred EEecCCCCEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeE
Q 011368 260 EFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNL 336 (487)
Q Consensus 260 ~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i 336 (487)
.++|++ +++++.. ....|.+|++............+.. ......+.++|+|+++++.... ++.|
T Consensus 150 ~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 150 VFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTV 216 (345)
T ss_dssp EE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred EECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcE
Confidence 999999 7776654 3568999999876521110111111 0135678999999999988764 3999
Q ss_pred EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC
Q 011368 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 400 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~ 400 (487)
.++++......+..+..-... +. ..... .....++++|||++|+++. ..+.|.+|++.
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~-~~--~~~~~---~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTL-PE--GFTGE---NAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESC-ET--TSCSS---SSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEeecccCCceeEEEEeeec-cc--ccccc---CCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999988322222222111100 00 00000 0125899999999988766 45789999994
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2e-12 Score=112.20 Aligned_cols=256 Identities=14% Similarity=0.177 Sum_probs=170.1
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|..++|--.+..+.+...+.|..+....+....+.... |
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~------------------------------------~--- 96 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL------------------------------------D--- 96 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccc------------------------------------c---
Confidence 6788888853334445555557777777777665433221 0
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.... .......|..++.. ...|++| .+|.+.+|..+.+...-. ++..+. ....+..+.-++..+.++++|
T Consensus 97 -~~~~-~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la-~g~g~~~~r~~~~~p~Iva~G 167 (412)
T KOG3881|consen 97 -DAKT-VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLA-TGPGLYDVRQTDTDPYIVATG 167 (412)
T ss_pred -cccc-cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccc----cceeee-cCCceeeeccCCCCCceEecC
Confidence 0000 13445666666654 3477788 999999999984431100 001112 224566777777776788889
Q ss_pred eCC--CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEeC-CeEEEEeCCCCCce
Q 011368 273 SSR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTP 347 (487)
Q Consensus 273 ~~d--g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~d-~~i~iwd~~~~~~~ 347 (487)
+.. ..+.|||+++.+ ++|... ..+.-.--+ .-.-+++++.|-+. ...+++++. +.+++||.+.+.+|
T Consensus 168 Gke~~n~lkiwdle~~~------qiw~aK-NvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP 239 (412)
T KOG3881|consen 168 GKENINELKIWDLEQSK------QIWSAK-NVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP 239 (412)
T ss_pred chhcccceeeeecccce------eeeecc-CCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc
Confidence 998 899999999874 666652 111111000 01246788899877 778888865 99999999988899
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 427 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 427 (487)
+..+...+.++ +++...|.+++|++|..-|.+..+|++.+......+
T Consensus 240 V~~fd~~E~~i---------------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~------------------ 286 (412)
T KOG3881|consen 240 VAQFDFLENPI---------------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL------------------ 286 (412)
T ss_pred eeEeccccCcc---------------eeeeecCCCcEEEEecccchhheecccCceeecccc------------------
Confidence 99998877755 589999999999999999999999999874432222
Q ss_pred ccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368 428 RRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 486 (487)
Q Consensus 428 ~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~ 486 (487)
.+..+.|.++..||.+++||+++ +..+.||.
T Consensus 287 ----------------------------kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 287 ----------------------------KGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ----------------------------CCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 24445667777777777777777 44466664
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=5e-13 Score=120.46 Aligned_cols=163 Identities=10% Similarity=0.176 Sum_probs=107.1
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccccc-CCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH-NPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (487)
..|+++.|.|. +...++.+-.+|.+.++|.+--.-..-.. ... .+++..+... ..... .
T Consensus 220 tsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t~p~---------~~~-~k~~~~f~i~t~ksk~---------~ 279 (636)
T KOG2394|consen 220 SSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGATAPS---------YQA-LKDGDQFAILTSKSKK---------T 279 (636)
T ss_pred cceEEEEEEeC-CCceEEEEEecCceEEeeccccccCCCCc---------ccc-cCCCCeeEEeeeeccc---------c
Confidence 67999999874 44567777789999999873211000000 000 0000000000 00000 0
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
..++..+ .--.+.|+..+|+|||++||+- .||.++|+|..+.. .+- .++..-+...|++|+||| ++|++
T Consensus 280 rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg-------~mkSYFGGLLCvcWSPDG-KyIvt 349 (636)
T KOG2394|consen 280 RNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLG-------VMKSYFGGLLCVCWSPDG-KYIVT 349 (636)
T ss_pred CCcccee-EeccccccceeEcCCCceEEEEecCceEEEeeccHHH-HHH-------HHHhhccceEEEEEcCCc-cEEEe
Confidence 0111111 2234589999999999999998 99999999999543 221 234455678999999999 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 323 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~ 323 (487)
|++|..|.||.+..++.+ -.+ .+|..+|..|+|.|
T Consensus 350 GGEDDLVtVwSf~erRVV------ARG-----------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 350 GGEDDLVTVWSFEERRVV------ARG-----------QGHKSWVSVVAFDP 384 (636)
T ss_pred cCCcceEEEEEeccceEE------Eec-----------cccccceeeEeecc
Confidence 999999999999987643 233 35799999999997
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.7e-12 Score=108.89 Aligned_cols=117 Identities=14% Similarity=0.292 Sum_probs=87.1
Q ss_pred CCCceeEEEeCCCCCEEEE--e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---CC
Q 011368 203 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG 276 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg 276 (487)
..++|.+++|+|+|+.|++ | .++.|.+||++ ...... + +...+..+.|+|+| ++|++++. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence 4556999999999998765 4 67899999997 333222 1 23567889999999 99998875 46
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-------CCeEEEEeCCCCCceee
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-------d~~i~iwd~~~~~~~~~ 349 (487)
.|.+||.++.+.+ ..++. ..+..++|+|||++++++. |+.++||+.. ++.+.
T Consensus 126 ~l~~wd~~~~~~i----~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~ 184 (194)
T PF08662_consen 126 DLEFWDVRKKKKI----STFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY 184 (194)
T ss_pred EEEEEECCCCEEe----ecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence 7999999976543 22222 3578999999999999753 5889999985 56555
Q ss_pred eee
Q 011368 350 TFK 352 (487)
Q Consensus 350 ~~~ 352 (487)
...
T Consensus 185 ~~~ 187 (194)
T PF08662_consen 185 KKP 187 (194)
T ss_pred ecc
Confidence 443
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.4e-12 Score=122.48 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=130.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEec---CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
...|...+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+..+.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----------------------------~~l~~~~--- 245 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----------------------------ELVGNFP--- 245 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------------EEeecCC---
Confidence 3456778999999999999988763 46899999987753 2233333
Q ss_pred ccccccccccceeEEEEEecCCCcEEE-EEeCCCc--EEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
+.+...+| +|||+.|+ +.+.++. |.+||+.++....+
T Consensus 246 ---------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L----------------------------- 285 (435)
T PRK05137 246 ---------GMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL----------------------------- 285 (435)
T ss_pred ---------CcccCcEE--CCCCCEEEEEEecCCCceEEEEECCCCceEEc-----------------------------
Confidence 55678889 67898775 4455555 66678777764432
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 257 (487)
..+........|+|||+.|+.. .++ .|+++|+. ++....+ ......+.
T Consensus 286 -------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~l--------t~~~~~~~ 337 (435)
T PRK05137 286 -------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRRI--------SFGGGRYS 337 (435)
T ss_pred -------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEEe--------ecCCCccc
Confidence 3445556778999999988775 333 67888876 3333322 12234456
Q ss_pred EEEEecCCCCEEEEEeCC---CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368 258 SAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 333 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d 333 (487)
...|+|+| +.|+..+.+ ..|.+||+..+.. +.+.. ...+..+.|+|||++|+... +
T Consensus 338 ~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~--------------~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 338 TPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTS--------------GFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccC--------------CCCCCCCeECCCCCEEEEEEcc
Confidence 68899999 888776643 3678888765431 22222 12356789999999887542 2
Q ss_pred ------CeEEEEeCCC
Q 011368 334 ------MNLKLWDIRM 343 (487)
Q Consensus 334 ------~~i~iwd~~~ 343 (487)
..++++|+..
T Consensus 398 ~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 398 PGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCCcceEEEEECCC
Confidence 2577778753
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=5.1e-10 Score=103.84 Aligned_cols=269 Identities=12% Similarity=0.125 Sum_probs=161.6
Q ss_pred cCcEEEEEEcCCCCEEEEEec----CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
......++++|++++|.+... +|.|..|++....- ..+.+.......
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------ 86 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------ 86 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence 345677899999999998876 57899999876411 112222222111
Q ss_pred cccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-cceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
.....+++ ++++++|+++. .+|.|.++++.. +.+..........
T Consensus 87 ------~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-------------------------- 132 (345)
T PF10282_consen 87 ------SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-------------------------- 132 (345)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE--------------------------
T ss_pred ------CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC--------------------------
Confidence 34566777 68899998887 589999999987 4433221100000
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
..-............++.++|++++++++ ....|.+|+++.....+..... ..+ ......+.++|+|
T Consensus 133 --------g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~--~~~-~~G~GPRh~~f~p 201 (345)
T PF10282_consen 133 --------GSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS--IKV-PPGSGPRHLAFSP 201 (345)
T ss_dssp --------EEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE--EEC-STTSSEEEEEE-T
T ss_pred --------CCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec--ccc-ccCCCCcEEEEcC
Confidence 00000002234567899999999988886 6679999999855422211100 012 2345679999999
Q ss_pred CCCCEEEEEe-CCCeEEEEEcc--CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368 264 IYCNLLAYSS-SRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL 338 (487)
Q Consensus 264 ~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i 338 (487)
++ +++++.. .++.|.++++. .+.. ........ .+. .+.+ ......|.++|||++|.++. .+.|.+
T Consensus 202 dg-~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~---~~~---~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 202 DG-KYAYVVNELSNTVSVFDYDPSDGSL--TEIQTIST---LPE---GFTG-ENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp TS-SEEEEEETTTTEEEEEEEETTTTEE--EEEEEEES---CET---TSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred Cc-CEEEEecCCCCcEEEEeecccCCce--eEEEEeee---ccc---cccc-cCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 99 6666555 57899999998 3321 11111111 000 0011 23678999999999998874 389999
Q ss_pred EeCCCCCceeee---eecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC
Q 011368 339 WDIRMDSTPVAT---FKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 400 (487)
Q Consensus 339 wd~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~ 400 (487)
|++......+.. +... ..+ +.++++|+|++|+++. .++.|.+|++.
T Consensus 272 f~~d~~~g~l~~~~~~~~~G~~P----------------r~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTGGKFP----------------RHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEECTTTTTEEEEEEEEESSSSE----------------EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEecCCCceEEEEEEeCCCCCc----------------cEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999432222222 2221 112 5899999999999877 55789999885
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=4e-10 Score=97.76 Aligned_cols=221 Identities=11% Similarity=0.123 Sum_probs=143.1
Q ss_pred cceeEEEEEecCCCcEEEEEeC---CCcEEEEEccc--cceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
+.++-|+| ++++++|.++.. +|.|--|.++. |++..+-..
T Consensus 40 ~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--------------------------------- 84 (346)
T COG2706 40 GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--------------------------------- 84 (346)
T ss_pred CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc---------------------------------
Confidence 77899999 578888888753 57788887764 554332110
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCC-CC----CCcEEEEEE
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD-DL----TEVITSAEF 261 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~----~~~v~~v~~ 261 (487)
...+ .+-+.+++++++++++++ ..|.|.++-++..+.....++...+.-. .| ...+.+..+
T Consensus 85 ----------~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~ 152 (346)
T COG2706 85 ----------TLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF 152 (346)
T ss_pred ----------ccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence 0122 223789999999999998 7899999999866554433221111111 11 112788899
Q ss_pred ecCCCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368 262 HPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL 338 (487)
Q Consensus 262 ~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i 338 (487)
.|++ +++++..- .-.|.+|++..+.+.......+.. ...-+-|.|+|++++...-. +++|.+
T Consensus 153 tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 153 TPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CCCC-CEEEEeecCCceEEEEEcccCccccccccccCC--------------CCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 9999 88887753 347999999987654322222222 35678899999999888754 499999
Q ss_pred EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCC
Q 011368 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 402 (487)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~ 402 (487)
|........+..++.+...- .++.+.... -++.++|||++|.++.. ...|.+|.+...
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP---~dF~g~~~~---aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLP---EDFTGTNWA---AAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEEcCCCceEEEeeeeccCc---cccCCCCce---eEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99976334444444333211 011121122 47899999999998764 247888888754
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.3e-13 Score=121.89 Aligned_cols=253 Identities=15% Similarity=0.185 Sum_probs=181.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.-+.+.++.+|++|+.|+..|.|-.+|..+++.. .++.. .
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------------~Ei~v-------------~ 170 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------------FEINV-------------M 170 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceee---------------------------eeeeh-------------h
Confidence 3568899999999999999999999999888652 22222 2
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
+.|.++.|. .+.++||++ ....+.|||-.+-++.++
T Consensus 171 Etv~Dv~~L--Hneq~~AVA-QK~y~yvYD~~GtElHCl----------------------------------------- 206 (545)
T KOG1272|consen 171 ETVRDVTFL--HNEQFFAVA-QKKYVYVYDNNGTELHCL----------------------------------------- 206 (545)
T ss_pred hhhhhhhhh--cchHHHHhh-hhceEEEecCCCcEEeeh-----------------------------------------
Confidence 678999995 455566555 567899999876665543
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.....|..+.|-|..-+|+++ ..|.++.-|+.+++..- .+....+.+..+.-+|-+ ..+-+|
T Consensus 207 --------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa--------~~~t~~G~~~vm~qNP~N-aVih~G 269 (545)
T KOG1272|consen 207 --------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA--------SIRTGAGRTDVMKQNPYN-AVIHLG 269 (545)
T ss_pred --------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhH--------HHHccCCccchhhcCCcc-ceEEEc
Confidence 234568889999998888888 99999999999655322 234455677888899988 899999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 351 (487)
...|+|.+|.....+.+ ..+-. |.++|.++++.++|+|+++. -|..++|||++. ...+.++
T Consensus 270 hsnGtVSlWSP~skePL----vKiLc-------------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~-~~ql~t~ 331 (545)
T KOG1272|consen 270 HSNGTVSLWSPNSKEPL----VKILC-------------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN-FYQLHTY 331 (545)
T ss_pred CCCceEEecCCCCcchH----HHHHh-------------cCCCcceEEECCCCcEEeecccccceeEeeecc-cccccee
Confidence 99999999999887655 23333 47899999999999999985 589999999997 4444444
Q ss_pred ec-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc----eeEEEeccCCccccceEeeC
Q 011368 352 KI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 352 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~ 424 (487)
.. +.. ..+++|..| +|| .+....+.||.=.-... ....-.-...+|..+.|.|-
T Consensus 332 ~tp~~a-----------------~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 332 RTPHPA-----------------SNLSLSQKG-LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred ecCCCc-----------------ccccccccc-cee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 33 222 368888554 344 45555899996432211 11111122347778888774
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=3.9e-11 Score=115.31 Aligned_cols=190 Identities=15% Similarity=0.140 Sum_probs=122.2
Q ss_pred cceeEEEEEecCCCcEEEEEeCC---CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+...+| +|+|++|+.+..+ ..|++||+.+++...+
T Consensus 190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-------------------------------------- 229 (417)
T TIGR02800 190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV-------------------------------------- 229 (417)
T ss_pred CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 55788889 6899999887643 4799999988764433
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cC--CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
..+...+.+++|+|||+.|+.. .+ ..|++||+.++ .... +..+........|+|+|
T Consensus 230 ----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~~~~--------l~~~~~~~~~~~~s~dg- 289 (417)
T TIGR02800 230 ----------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-QLTR--------LTNGPGIDTEPSWSPDG- 289 (417)
T ss_pred ----------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-CEEE--------CCCCCCCCCCEEECCCC-
Confidence 2334456678999999987653 33 35888888743 3222 22333344567899999
Q ss_pred CEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-C---eEEEE
Q 011368 267 NLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M---NLKLW 339 (487)
Q Consensus 267 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~---~i~iw 339 (487)
+.|+..+. ++ .|.++|+.+++. ..+.. +...+..+.|+|+|++|+.+.. + .|.+|
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~~~~~-----~~l~~-------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDADGGEV-----RRLTF-------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred CEEEEEECCCCCceEEEEECCCCCE-----EEeec-------------CCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 77776654 33 577777766542 22221 1245677899999999887643 3 78888
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC---cEEEEEe
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSH 399 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg---~i~iwd~ 399 (487)
|+.+ +. ...+...... ....|+|||++|+..+.++ .+++.+.
T Consensus 352 d~~~-~~-~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 352 DLDG-GG-ERVLTDTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred eCCC-CC-eEEccCCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 8875 32 2333222111 2578999999988777654 3445443
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.3e-11 Score=114.02 Aligned_cols=212 Identities=14% Similarity=0.121 Sum_probs=131.1
Q ss_pred cceeEEEEEecCCCcEEEEEeCC---CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+...+| +|+|+.|+..+.+ ..|.+|++.+++...+
T Consensus 199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-------------------------------------- 238 (430)
T PRK00178 199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-------------------------------------- 238 (430)
T ss_pred CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc--------------------------------------
Confidence 66888999 6889988876533 3688889988765433
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
....+.+...+|+|||+.|+.. .++ .|++||+.++ .... +..+........|+|+|
T Consensus 239 ----------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~--------lt~~~~~~~~~~~spDg- 298 (430)
T PRK00178 239 ----------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR-QLSR--------VTNHPAIDTEPFWGKDG- 298 (430)
T ss_pred ----------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC-CeEE--------cccCCCCcCCeEECCCC-
Confidence 2223344568999999988753 444 6888898843 3222 22333445667899999
Q ss_pred CEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C--CeEEEE
Q 011368 267 NLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLW 339 (487)
Q Consensus 267 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d--~~i~iw 339 (487)
+.|+..+. +| .|.++|+.+++.. .+.. . ........|+|||++|+... + ..|.+|
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~g~~~-----~lt~-----------~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNGGRAE-----RVTF-----------V--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEE-----Eeec-----------C--CCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 77766654 33 5666777666421 1111 0 11234578999999998653 2 368889
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-C--cEEEEEeCCCCceeEEEeccCCcc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
|+.+ +.. ..+...... ....|+|||++|+..+.+ | .|+++++..+ ....+..+.+.+
T Consensus 361 dl~t-g~~-~~lt~~~~~----------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g~~ 420 (430)
T PRK00178 361 DLQR-GSV-RILTDTSLD----------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTAQGEV 420 (430)
T ss_pred ECCC-CCE-EEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCCCCCc
Confidence 9875 432 333221111 156899999998876644 3 4666666433 233444455555
Q ss_pred ccceEee
Q 011368 417 RKPILQA 423 (487)
Q Consensus 417 ~~~~~~~ 423 (487)
...+++|
T Consensus 421 ~~p~ws~ 427 (430)
T PRK00178 421 REPSWSP 427 (430)
T ss_pred CCCccCC
Confidence 6666665
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.7e-11 Score=109.48 Aligned_cols=288 Identities=15% Similarity=0.174 Sum_probs=188.1
Q ss_pred cccccccccceeEEEEEecCCCcEEEE-EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
.+..+++...-+.|.. ++||+|+++ |...-.|++||+..-.++....
T Consensus 44 LiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERh------------------------------ 91 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERH------------------------------ 91 (703)
T ss_pred HHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeec------------------------------
Confidence 3445555577888888 689998655 6688899999998765442210
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
-....|.-.-.+.|-..++.- .|.+|-+..-- +....+ .++ ..-..++++.
T Consensus 92 -----------------lDae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy~~------RIP---~~GRDm~y~~ 143 (703)
T KOG2321|consen 92 -----------------LDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHYRT------RIP---KFGRDMKYHK 143 (703)
T ss_pred -----------------ccccceeEEEeccchhhheEeecCceeeehhhc--Ceeeee------ecC---cCCccccccC
Confidence 011223333344443344443 77777654322 222211 011 1224566665
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR 342 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~ 342 (487)
-.+.+++. +....|.-+++++|+.+ ..|.. ..+.+++|..++-..+|++|. +|.|.+||.+
T Consensus 144 ~scDly~~-gsg~evYRlNLEqGrfL----~P~~~-------------~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 144 PSCDLYLV-GSGSEVYRLNLEQGRFL----NPFET-------------DSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred CCccEEEe-ecCcceEEEEccccccc----ccccc-------------ccccceeeeecCccceEEecccCceEEEecch
Confidence 44344444 44456778899998765 44444 136899999999999999997 5999999998
Q ss_pred CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
. ...+..+..... +. .....+....|+++.|+.||-.+++|+.+|.+.|||+++.+.....-++..-++..+.|.
T Consensus 206 ~-ksrv~~l~~~~~-v~---s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 206 D-KSRVGTLDAASS-VN---SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred h-hhhheeeecccc-cC---CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 7 665555554433 10 111222333458999999999999999999999999999877766666667788888887
Q ss_pred eCCccccccccceeeecccceecCCC-CCccccccccCCCeEEEEEcCCCCEEEEecCCe
Q 011368 423 AAPRARRSSLSNLTRGLYRQAHENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 481 (487)
Q Consensus 423 ~~~~~~~~~~~~l~~g~~~~~~~w~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~ 481 (487)
+...... +++....-.++|.. .+...........++++++-|++-++++|.++.
T Consensus 281 ~~~~q~~-----v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 281 DTDQQNK-----VVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred ccCCCce-----EEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 7633333 55555544499932 234445556667799999999999999988665
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=7.9e-12 Score=116.64 Aligned_cols=257 Identities=13% Similarity=0.178 Sum_probs=173.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
......|++|+....|+|+|+.||.+++-.+.+.... +... .+..........++.||.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d---------~~~~---glaa~snLsmNQtLeGH~--------- 71 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD---------LNKS---GLAAASNLSMNQTLEGHN--------- 71 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCc---------cccc---ccccccccchhhhhccCc---------
Confidence 3446889999999999999999999999988765431 0000 112222344557799999
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+.|.-+.| +.+.+.|-++..+|.|.+|-+-.+.....-
T Consensus 72 ---~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEM------------------------------------- 109 (1189)
T KOG2041|consen 72 ---ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEM------------------------------------- 109 (1189)
T ss_pred ---ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHH-------------------------------------
Confidence 99999999 566778888889999999998877543210
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
......+-|.+++|+.||+.|+.. .||.|.+=.++ +.+.+.. .+++. ....+.|+++. ..+
T Consensus 110 --------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK------eLkg~--~l~hv~ws~D~-~~~ 171 (1189)
T KOG2041|consen 110 --------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK------ELKGQ--LLAHVLWSEDL-EQA 171 (1189)
T ss_pred --------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch------hcchh--eccceeecccH-HHH
Confidence 013456778999999999999999 99999887777 4433321 12221 23578899998 888
Q ss_pred EEEeCCCeEEEEEccCCcccccccee-ecccccccCccccccccccceeEEEEc--------CCCCEEEEEeC-CeEEEE
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFA--------NDGQHLLSRDY-MNLKLW 339 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~v~~s--------~~~~~l~s~~d-~~i~iw 339 (487)
+.+-.+|.+.+||....-...-.... ..+ ...+......|..+.|. ||...|+.+-+ |.+.|.
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNG-------TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEee-------eeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 88889999999998764321100011 111 00111112235555553 57778888854 888887
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
.-..+..++..-.+.. +....|+++|..||.++.+.
T Consensus 245 R~eND~~Pvv~dtgm~-----------------~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 245 RSENDPEPVVVDTGMK-----------------IVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred hhcCCCCCeEEecccE-----------------eecceecCCCcEEEEccCcc
Confidence 7665455554333322 25899999999999998763
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.8e-11 Score=114.31 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=127.6
Q ss_pred cceeEEEEEecCCCcEEEEEeC-CC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTN-DK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+...+| +|||+.|+..+. ++ .|.+||+.+++...+
T Consensus 218 ~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-------------------------------------- 257 (448)
T PRK04792 218 EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-------------------------------------- 257 (448)
T ss_pred CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------------------------
Confidence 66888999 688998887653 33 588888887764432
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCe--EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
..........+|+|||+.|+.. .++. |+++|+.+ +.... +..+.......+|+|+|
T Consensus 258 ----------t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g~~~~--------lt~~~~~~~~p~wSpDG- 317 (448)
T PRK04792 258 ----------TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-KALTR--------ITRHRAIDTEPSWHPDG- 317 (448)
T ss_pred ----------cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-CCeEE--------CccCCCCccceEECCCC-
Confidence 1112233467899999988764 5664 77778773 33222 22334455678999999
Q ss_pred CEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-C--eEEEE
Q 011368 267 NLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M--NLKLW 339 (487)
Q Consensus 267 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~--~i~iw 339 (487)
+.|+..+. ++ .|.++|+.+++... ..+.+ .......|+|||++|+..+ + + .|.++
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~---Lt~~g---------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKVSR---LTFEG---------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEE---EecCC---------------CCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 77766554 44 46666776654210 11222 1234568999999988653 2 4 56667
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-Cc--EEEEEeCCCCceeEEEeccCCcc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NL--LRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
|+.+ +.. ..+...... ....|+|||++|+..+.+ |. +++++.. + .....+..+.+.+
T Consensus 380 dl~~-g~~-~~lt~~~~d----------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~ 439 (448)
T PRK04792 380 DLET-GAM-QVLTSTRLD----------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEV 439 (448)
T ss_pred ECCC-CCe-EEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCc
Confidence 7765 332 333222110 146899999988766543 33 6667763 3 3344455555555
Q ss_pred ccceEee
Q 011368 417 RKPILQA 423 (487)
Q Consensus 417 ~~~~~~~ 423 (487)
...+++|
T Consensus 440 ~~p~Wsp 446 (448)
T PRK04792 440 KSPAWSP 446 (448)
T ss_pred CCCccCC
Confidence 6666665
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=2.4e-12 Score=109.91 Aligned_cols=293 Identities=14% Similarity=0.137 Sum_probs=166.9
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccce-e-EeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-K-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+-|.+|.| ...|.+|++|..+|.|.++.-..... . ..... +..+.++ +..
T Consensus 26 diis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~--------fqshepE-------------FDY----- 77 (433)
T KOG1354|consen 26 DIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTE--------FQSHEPE-------------FDY----- 77 (433)
T ss_pred cceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeee--------eeccCcc-------------cch-----
Confidence 56899999 57899999999999999986543221 0 00000 0000000 000
Q ss_pred ccceeeeecccCCCceeEEEeCCCCC---EEEEecCCeEEEEEccCCCcee-----------------EEe---------
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCE---TFVSADDLRINLWNLEISDQCF-----------------NIV--------- 242 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~---~l~s~~d~~i~iwd~~~~~~~~-----------------~~~--------- 242 (487)
++ ...-...|+.+.|.++++ +|+++.|.+|++|.+...+... ++.
T Consensus 78 ----Lk--SleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v 151 (433)
T KOG1354|consen 78 ----LK--SLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV 151 (433)
T ss_pred ----hh--hhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee
Confidence 00 012345688899987643 3444499999999887433221 000
Q ss_pred ecCCCC--CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEE
Q 011368 243 DMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 320 (487)
Q Consensus 243 ~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~ 320 (487)
...++. -.+|.-.|.++.++.++ ..++++ .|=.|.+|+++-..... .+... .+..+..-..-|++..
T Consensus 152 ea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sF---nIVDI------KP~nmEeLteVITsaE 220 (433)
T KOG1354|consen 152 EASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSF---NIVDI------KPANMEELTEVITSAE 220 (433)
T ss_pred eeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCce---eEEEc------cccCHHHHHHHHhhhc
Confidence 000111 13577789999999997 666654 56789999987543221 11111 1112222345688899
Q ss_pred EcCCCCEEE--EEeCCeEEEEeCCCCCceeee---eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368 321 FANDGQHLL--SRDYMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 395 (487)
Q Consensus 321 ~s~~~~~l~--s~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~ 395 (487)
|+|....++ +.+.|+|++-|++...-+... +.....+... -+-.+.+..|.++.|+++|+||++-.. -+|+
T Consensus 221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r---sffseiIsSISDvKFs~sGryilsRDy-ltvk 296 (433)
T KOG1354|consen 221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR---SFFSEIISSISDVKFSHSGRYILSRDY-LTVK 296 (433)
T ss_pred cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch---hhHHHHhhhhhceEEccCCcEEEEecc-ceeE
Confidence 999754333 345599999999852222111 1111111100 000112223468999999999998766 4899
Q ss_pred EEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEE
Q 011368 396 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIA 475 (487)
Q Consensus 396 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la 475 (487)
+||++.......+.+.|...-..+......|.-+ .=..++|+-++.+++
T Consensus 297 ~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If-------------------------------dKFec~~sg~~~~v~ 345 (433)
T KOG1354|consen 297 LWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF-------------------------------DKFECSWSGNDSYVM 345 (433)
T ss_pred EEeccccCCcceEEeehHhHHHHHHHHhhccchh-------------------------------heeEEEEcCCcceEe
Confidence 9999876566666666654322222221111111 113678999999999
Q ss_pred EecCCe-EEEEe
Q 011368 476 CANGNS-LFFHY 486 (487)
Q Consensus 476 ~~s~~~-~~i~~ 486 (487)
+|+.++ +.+|.
T Consensus 346 TGsy~n~frvf~ 357 (433)
T KOG1354|consen 346 TGSYNNVFRVFN 357 (433)
T ss_pred cccccceEEEec
Confidence 999666 44553
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=7.1e-11 Score=113.54 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=116.8
Q ss_pred ccCCCceeEEEeCCCCCEEEEe-cC---CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE-EeCC
Q 011368 201 HAHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSR 275 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~d 275 (487)
..+...+...+|+|||+.|+.+ .+ ..|++||+.++. ...+ ..+...+.+++|+|+| +.|+. .+.+
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~~--------~~~~~~~~~~~~spDg-~~l~~~~~~~ 255 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REKV--------ASFPGMNGAPAFSPDG-SKLAVSLSKD 255 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEe--------ecCCCCccceEECCCC-CEEEEEECCC
Confidence 3455668888999999999886 32 479999998543 2221 2233456678999999 76654 4444
Q ss_pred C--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC----CeEEEEeCCCCCceee
Q 011368 276 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA 349 (487)
Q Consensus 276 g--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d----~~i~iwd~~~~~~~~~ 349 (487)
+ .|.+||+.++.. ..+..+ ........|+|||+.|+..++ ..|+++|+.. +.. .
T Consensus 256 ~~~~i~~~d~~~~~~-----~~l~~~-------------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~~-~ 315 (417)
T TIGR02800 256 GNPDIYVMDLDGKQL-----TRLTNG-------------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GEV-R 315 (417)
T ss_pred CCccEEEEECCCCCE-----EECCCC-------------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CCE-E
Confidence 4 588888887642 222221 223456789999998876543 3688888764 332 2
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC---cEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
.+..+.... ..+.|+|||++|+.++.++ .|.+||+.++... .+... .......++| +
T Consensus 316 ~l~~~~~~~---------------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--~l~~~-~~~~~p~~sp--d 375 (417)
T TIGR02800 316 RLTFRGGYN---------------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--VLTDT-GLDESPSFAP--N 375 (417)
T ss_pred EeecCCCCc---------------cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--EccCC-CCCCCceECC--C
Confidence 333222211 3789999999999888775 7899998875332 22222 2234456666 5
Q ss_pred cccccccceeeecccc
Q 011368 427 ARRSSLSNLTRGLYRQ 442 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~ 442 (487)
++. |+....++
T Consensus 376 g~~-----l~~~~~~~ 386 (417)
T TIGR02800 376 GRM-----ILYATTRG 386 (417)
T ss_pred CCE-----EEEEEeCC
Confidence 554 55544443
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1e-10 Score=112.49 Aligned_cols=206 Identities=16% Similarity=0.166 Sum_probs=127.4
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
...+.+.+...+|+|||+.|+..+.+ ..|.+|++.+++.. .+..+.
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-------------------------~l~~~~------ 242 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-------------------------QITNFE------ 242 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-------------------------EccCCC------
Confidence 34567788999999999999876643 36888898877531 111122
Q ss_pred ccccccccccceeEEEEEecCCCcEEEE-EeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
+.+...+| +|+|+.|+. ...++ .|.+||+.++....+
T Consensus 243 ---------g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l----------------------------- 282 (430)
T PRK00178 243 ---------GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV----------------------------- 282 (430)
T ss_pred ---------CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc-----------------------------
Confidence 33456888 678888774 44444 577888887764432
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 257 (487)
..+........|+|||+.|+.. .++ .|+++++.++ ....+. ..+ ....
T Consensus 283 -------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~~~~lt------~~~--~~~~ 334 (430)
T PRK00178 283 -------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-RAERVT------FVG--NYNA 334 (430)
T ss_pred -------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-CEEEee------cCC--CCcc
Confidence 3334445667899999987664 443 5777777633 332221 111 2234
Q ss_pred EEEEecCCCCEEEEEeCC-C--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368 258 SAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 333 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d 333 (487)
...|+|+| +.|+..+.+ + .|.++|+.+++. +.+.. ........|+|||++++... +
T Consensus 335 ~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~--------------~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 335 RPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD--------------TSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred ceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC--------------CCCCCCceECCCCCEEEEEEec
Confidence 56899999 888777653 3 578889887653 22222 01122458999999988653 2
Q ss_pred ---CeEEEEeCCCCCceeeeeecc
Q 011368 334 ---MNLKLWDIRMDSTPVATFKIH 354 (487)
Q Consensus 334 ---~~i~iwd~~~~~~~~~~~~~~ 354 (487)
..|.++++. +.....+..+
T Consensus 395 ~g~~~l~~~~~~--g~~~~~l~~~ 416 (430)
T PRK00178 395 QGRGVLMLVSIN--GRVRLPLPTA 416 (430)
T ss_pred CCceEEEEEECC--CCceEECcCC
Confidence 456666764 4444444433
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=3.4e-11 Score=117.23 Aligned_cols=149 Identities=12% Similarity=0.095 Sum_probs=121.4
Q ss_pred EeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368 211 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 289 (487)
Q Consensus 211 ~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 289 (487)
-++++.-++++| .-+.|.+|+....... ..+.+|.+.|.++.|+-+| .++++.|+|+.+|+|++++.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p--------~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKP--------IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCc--------ceecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence 347778889999 8999999998833332 2468999999999999999 99999999999999999997643
Q ss_pred cccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCC
Q 011368 290 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 368 (487)
Q Consensus 290 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (487)
. . ...+|...++.+.|.|+ .++++ .|.+.++|+.. +..+..+..|...
T Consensus 211 ~-------~---------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~----------- 259 (967)
T KOG0974|consen 211 G-------C---------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK----------- 259 (967)
T ss_pred C-------c---------ccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc-----------
Confidence 1 1 13567999999999998 66665 67999999775 5666677777653
Q ss_pred CcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 369 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 369 ~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.++.++.+++...++|++.|+.+++|++...
T Consensus 260 ---~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 260 ---GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---ceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 2368999999999999999999999999864
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=9.9e-11 Score=112.19 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=123.9
Q ss_pred ccccCcEEEEEEcCCCCEEEEEec-CC--cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDR-GG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
..+...+.+..|||||+.|+..+. ++ .|.+||+.+++. +.+..+.+
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-------------------------~~lt~~~g------ 262 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-------------------------EKVTSFPG------ 262 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------EEecCCCC------
Confidence 345567889999999999987653 33 577888776642 11222222
Q ss_pred cccccccccceeEEEEEecCCCcEEEE-EeCCCc--EEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
.....+| +|||+.|+. .+.++. |.++|+.+++...+
T Consensus 263 ---------~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------------------------------ 301 (448)
T PRK04792 263 ---------INGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI------------------------------ 301 (448)
T ss_pred ---------CcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC------------------------------
Confidence 2346788 688987765 455665 66777777664432
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 258 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 258 (487)
..+.......+|+|||+.|+.. .++ .|+++|+.+ +....+ +..+. ....
T Consensus 302 ------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~~~~L------t~~g~--~~~~ 354 (448)
T PRK04792 302 ------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GKVSRL------TFEGE--QNLG 354 (448)
T ss_pred ------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCEEEE------ecCCC--CCcC
Confidence 3344456678999999988765 444 455566663 333222 11222 2245
Q ss_pred EEEecCCCCEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C
Q 011368 259 AEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y 333 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d 333 (487)
.+|+|+| +.|+..+. ++ .|.++|+.+++. ..+.. ........|+|||+.|+... +
T Consensus 355 ~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~--------------~~~d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 355 GSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTS--------------TRLDESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred eeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccC--------------CCCCCCceECCCCCEEEEEEecC
Confidence 6899999 77777654 44 455567776642 22222 01112347999999887643 2
Q ss_pred --CeEEEEeCCCCCceeeeeeccc
Q 011368 334 --MNLKLWDIRMDSTPVATFKIHE 355 (487)
Q Consensus 334 --~~i~iwd~~~~~~~~~~~~~~~ 355 (487)
..+++++.. +.....+..+.
T Consensus 415 g~~~l~~~~~~--G~~~~~l~~~~ 436 (448)
T PRK04792 415 GKQVLAAVSID--GRFKARLPAGQ 436 (448)
T ss_pred CceEEEEEECC--CCceEECcCCC
Confidence 347777763 55555565443
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=1.4e-09 Score=98.17 Aligned_cols=339 Identities=9% Similarity=0.098 Sum_probs=193.9
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
.-++..++|||.|.+|++.... .|.+|.-..... +..+..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~---------------------------l~~~~~------------ 71 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAK---------------------------LVRFRH------------ 71 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchhh---------------------------eeeeec------------
Confidence 4578999999999999988765 488998654432 233332
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCC---------------cEEEEEccccceeEeeecCCCCcee--eeeccccccccc
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDK---------------TIKLWKVRDQKVKKIKEMDHFPFVS--SENTLLAEKNFM 174 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~---------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 174 (487)
..|..+.| +|++++|.+-+... .+.+||+.++.+.........+.+. -+.|.-.+....
T Consensus 72 --~~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 72 --PDVKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred --CCceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence 44788888 67889998865433 4999999999877665443333111 122222222222
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCC--CEEEE-----e-cCCeEEEEEccCCCceeEEeecCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDC--ETFVS-----A-DDLRINLWNLEISDQCFNIVDMKP 246 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s-----~-~d~~i~iwd~~~~~~~~~~~~~~~ 246 (487)
......-..+....... ..+.. .-....|...+|+|.+ ..|+. . ..+.+++|.+..+.... ..
T Consensus 148 Rvv~~sl~i~e~t~n~~-~~p~~---~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~-tk---- 218 (561)
T COG5354 148 RVVGSSLYIHEITDNIE-EHPFK---NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV-TK---- 218 (561)
T ss_pred hhccCeEEEEecCCccc-cCchh---hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee-ee----
Confidence 22111111111000000 01111 1113568888899853 34444 3 57889999988443322 11
Q ss_pred CCCCCCCCcEEEEEEecCCCCEEEEEeC-----------CCeEEEEEccCCccccccceeecccccccCccccccccccc
Q 011368 247 SNMDDLTEVITSAEFHPIYCNLLAYSSS-----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 315 (487)
Q Consensus 247 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 315 (487)
++..- .-..+.|++.| ++|++--. +..+.|++++.... +... +..++
T Consensus 219 -~lfk~--~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-----~V~~-------------~~~~p 276 (561)
T COG5354 219 -NLFKV--SGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-----PVEK-------------DLKDP 276 (561)
T ss_pred -eeEee--cccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeeccccc-----ceec-------------ccccc
Confidence 11111 12567899988 76654311 24577777774332 1110 11478
Q ss_pred eeEEEEcCCCCEEEEEe---CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-
Q 011368 316 ISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS- 391 (487)
Q Consensus 316 v~~v~~s~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d- 391 (487)
|...+|.|.++.+++.+ .-.+.++|++. .....+..... ..+.|||.+++++.++-|
T Consensus 277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~Pe~~r-----------------NT~~fsp~~r~il~agF~n 337 (561)
T COG5354 277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFYFPEQKR-----------------NTIFFSPHERYILFAGFDN 337 (561)
T ss_pred ceeeeecccCCceeEEecccccceeeccccc--ceEEecCCccc-----------------ccccccCcccEEEEecCCc
Confidence 99999999998877653 38899999974 44444433322 378999999999998876
Q ss_pred --CcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeee---c---ccce-ecCCCCCccccccccCCCe
Q 011368 392 --NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG---L---YRQA-HENSSSGHHELSYNLSSKL 462 (487)
Q Consensus 392 --g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g---~---~~~~-~~w~~~~~~~~~~~~~~~v 462 (487)
|.|-+||....-.....+.+... .-+.|+| ++++ +.+. . .|.. ++|........ ..
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~n~--s~~~wsp--d~qF-----~~~~~ts~k~~~Dn~i~l~~v~g~~~f------el 402 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSP--DGQF-----YDTDTTSEKLRVDNSIKLWDVYGAKVF------EL 402 (561)
T ss_pred cccceEEeccCCceEEEEEeecCCc--eEeeccC--CceE-----EEecCCCcccccCcceEEEEecCchhh------hh
Confidence 78999998866333324443322 1233444 3433 2221 1 1233 55533322211 66
Q ss_pred EEEEEcCCCCEEEEecC
Q 011368 463 LHLAWHPTTNLIACANG 479 (487)
Q Consensus 463 ~~~~~spd~~~la~~s~ 479 (487)
+.+.|.|.|++..+.|.
T Consensus 403 ~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 403 TNITWDPSGQYVTTSSS 419 (561)
T ss_pred hhccccCCcccceeecc
Confidence 67788888777766664
No 254
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.2e-09 Score=97.88 Aligned_cols=312 Identities=16% Similarity=0.222 Sum_probs=186.1
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (487)
Q Consensus 35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (487)
=+-+.|||-|.||++--..| |.+|--..-.. +.-| .| .
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------------~~RF-~H-------------p 250 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------------IQRF-YH-------------P 250 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH---------------------------HHhc-cC-------------C
Confidence 45789999999999987765 78996433221 1111 23 4
Q ss_pred ceeEEEEEecCCCcEEEEEeC-----------CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 115 KINRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
.|.-+.| +|+.++|+|-+. ...++|||+.+|..+......
T Consensus 251 ~Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--------------------------- 301 (698)
T KOG2314|consen 251 GVQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--------------------------- 301 (698)
T ss_pred Cceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc---------------------------
Confidence 5888999 678899998541 257999999999876542110
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
......-.-..||.|++++|.-...+|.||+..+ +.+++.+.. ....|....|+|
T Consensus 302 -----------------~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps----f~lld~Ksl----ki~gIr~FswsP 356 (698)
T KOG2314|consen 302 -----------------KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS----FMLLDKKSL----KISGIRDFSWSP 356 (698)
T ss_pred -----------------CCCccccceEEeccCCceeEEeccceEEEEecCc----eeeeccccc----CCccccCcccCC
Confidence 1111112345799999999887557899998763 333333322 234588899999
Q ss_pred CCCCEEEEEeCC-----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-----
Q 011368 264 IYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----- 333 (487)
Q Consensus 264 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d----- 333 (487)
.+ ++||.=... ..+.|-.+.+++.+ ++-..| .-.=..+.|-.+|.+|+.--|
T Consensus 357 ~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nlf-------------nVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 357 TS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNLF-------------NVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred Cc-ceEEEEcccccCCcceEEEEecCcccee----eeccce-------------eeeccEEEeccCCcEEEEEEEeeccc
Confidence 98 877764431 24556655555433 222221 112234567788999885321
Q ss_pred ------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---CcEEEEEeCC-CC
Q 011368 334 ------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGV-GS 403 (487)
Q Consensus 334 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g~i~iwd~~~-~~ 403 (487)
..+.|+.++...-++..+...... ...+|-|.|..+++-+.+ .++.+|.+++ ..
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred cccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence 245666666434455555444332 489999999887765443 6799999984 32
Q ss_pred ce--eEEEeccCCccccceEeeCCccccccccceeeec---ccce-ecCCCC--CccccccccCCCeEEEEEcCCCCEEE
Q 011368 404 AG--GITVEAGKNENRKPILQAAPRARRSSLSNLTRGL---YRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIA 475 (487)
Q Consensus 404 ~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~---~~~~-~~w~~~--~~~~~~~~~~~~v~~~~~spd~~~la 475 (487)
.. +..+. ....+.+.++| .|++ ++.+. +.+. ...++. ........-.-..+.+-|.|.|++++
T Consensus 483 ~~~lVk~~d--k~~~N~vfwsP--kG~f-----vvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 483 KPSLVKELD--KKFANTVFWSP--KGRF-----VVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVV 553 (698)
T ss_pred chhhhhhhc--ccccceEEEcC--CCcE-----EEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEE
Confidence 22 22332 24556778888 6776 33332 3333 333222 11111111122346788999999999
Q ss_pred Eec-------CCeEEEE
Q 011368 476 CAN-------GNSLFFH 485 (487)
Q Consensus 476 ~~s-------~~~~~i~ 485 (487)
+++ +++..||
T Consensus 554 T~ss~wrhk~d~GYri~ 570 (698)
T KOG2314|consen 554 TSSSSWRHKVDNGYRIF 570 (698)
T ss_pred EeeehhhhccccceEEE
Confidence 877 4555555
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6e-10 Score=105.95 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=73.3
Q ss_pred ceeEEEeCCCCCEEEEe--cCCeEEEEE--ccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC---CeE
Q 011368 206 NINSISNNSDCETFVSA--DDLRINLWN--LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFV 278 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~--~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i 278 (487)
.....+|+|||+.|+.. .++...+|. +...+..... +..+...+....|+|+| +.|+..+.+ ..|
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I 353 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQI 353 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEE
Confidence 34577999999987765 566555554 4322221221 22333456788999999 888776543 468
Q ss_pred EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e---CCeEEEEeCCCCCce
Q 011368 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---YMNLKLWDIRMDSTP 347 (487)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~---d~~i~iwd~~~~~~~ 347 (487)
.+||+.+++. +.+.. ....+....|+|||++|+.. . ...|+++|+.. ++.
T Consensus 354 ~v~dl~~g~~-----~~Lt~-------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-g~~ 407 (428)
T PRK01029 354 CVYDLATGRD-----YQLTT-------------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT-KKT 407 (428)
T ss_pred EEEECCCCCe-----EEccC-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE
Confidence 9999988763 22222 01345678999999988743 2 26788889875 443
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.35 E-value=5e-09 Score=107.77 Aligned_cols=355 Identities=13% Similarity=0.093 Sum_probs=192.8
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
.+.|.++.+-++...++.+..+|.|.+...+.... ....+.+..+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~---------------------~~~~E~VG~v-------------- 119 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD---------------------EDEIEIVGSV-------------- 119 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC---------------------CceeEEEEEE--------------
Confidence 46799999999999999999999999883221100 0011222222
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC----CCCceeeeeccccccccccccCCCCcceeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD----HFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+..|.+++| +||++.|+.++.++++.+..-.- +........ .......+.+-..+..+-+..+.........
T Consensus 120 -d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~f-d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 120 -DSGILAASW--SPDEELLALVTGEGNLLLMTRDF-DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred -cCcEEEEEE--CCCcCEEEEEeCCCEEEEEeccc-eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence 278999999 68999999999999998875332 222111111 0111112222222222222222211100000
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c---C---CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D---D---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
.... +.-...+. ..+.-..|+|-.||+++|++ - . ..+++|+.+ +....+ .+.-.+--.+++
T Consensus 196 p~~~--~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~st-------SE~v~gLe~~l~ 263 (928)
T PF04762_consen 196 PTVP--KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQST-------SEPVDGLEGALS 263 (928)
T ss_pred CCCC--ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEec-------cccCCCccCCcc
Confidence 0000 00000113 55667789999999999985 3 2 578999987 332221 222223335789
Q ss_pred EecCCCCEEEEEeC---CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEE
Q 011368 261 FHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 337 (487)
Q Consensus 261 ~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~ 337 (487)
|.|.| ++||+... ...|.+|.-+ |..- ..|... +......|..+.|++|+..||..-...|.
T Consensus 264 WrPsG-~lIA~~q~~~~~~~VvFfErN-GLrh----geF~l~---------~~~~~~~v~~l~Wn~ds~iLAv~~~~~vq 328 (928)
T PF04762_consen 264 WRPSG-NLIASSQRLPDRHDVVFFERN-GLRH----GEFTLR---------FDPEEEKVIELAWNSDSEILAVWLEDRVQ 328 (928)
T ss_pred CCCCC-CEEEEEEEcCCCcEEEEEecC-CcEe----eeEecC---------CCCCCceeeEEEECCCCCEEEEEecCCce
Confidence 99999 99998865 3356666533 3211 122220 01124678999999999999987555699
Q ss_pred EEeCCCCC-ceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368 338 LWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 415 (487)
Q Consensus 338 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 415 (487)
+|-..... -....+...... .. ..+.|+|. ...|...+.+|.+..++..-.-. .-.+.
T Consensus 329 LWt~~NYHWYLKqei~~~~~~-----------~~---~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~---~s~~~--- 388 (928)
T PF04762_consen 329 LWTRSNYHWYLKQEIRFSSSE-----------SV---NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS---RSPGS--- 388 (928)
T ss_pred EEEeeCCEEEEEEEEEccCCC-----------CC---CceEECCCCCCEEEEEecCCcEEEEEEEEEEE---ecCCC---
Confidence 99886521 122233322221 01 25899994 45577777777777666542100 00000
Q ss_pred cccceEeeCCccccccccceeeecccce----ecCCCC----CccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 416 NRKPILQAAPRARRSSLSNLTRGLYRQA----HENSSS----GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~----~~w~~~----~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
.|...+ .++.-||. ..++.. -+......+..+|.+++|++++..+|+-..|+ +.+|.
T Consensus 389 ------~~~D~g--------~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 389 ------SPNDNG--------TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ------CccCce--------EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 000000 11111111 111111 01113345678999999999998777666555 87775
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=9.3e-10 Score=92.39 Aligned_cols=159 Identities=11% Similarity=0.003 Sum_probs=114.9
Q ss_pred eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccC
Q 011368 207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 285 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~ 285 (487)
..++.|++.+..++++ .+|.+.+-+.. .....+ .+++++|..+++...|+...++++.+|++|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~-----vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEK-----VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeee-----cccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4678889989999999 99999855544 121111 2467889999999999988889999999999999999994
Q ss_pred CccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEeC-CeEEEEeCCCCCceeeeeeccccccccccc
Q 011368 286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 363 (487)
Q Consensus 286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
.+. ..|.. ...|...|.+|.-+| .+.++++|++ ..|++||.++.++++..-+...
T Consensus 198 p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G-------- 254 (339)
T KOG0280|consen 198 PKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG-------- 254 (339)
T ss_pred Ccc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc--------
Confidence 321 23332 134577899998885 5779999985 9999999997677776554332
Q ss_pred ccCCCCcceeeEEEEcCC--CCEEEEEcCCCcEEEEEeCCCC
Q 011368 364 LYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~s~d--~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
+|+.+.++|. ++.|+++-.+ -.+|-+.+.+.
T Consensus 255 --------GVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~ 287 (339)
T KOG0280|consen 255 --------GVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKV 287 (339)
T ss_pred --------ceEEEEecchhhhHHHHHHHhc-CceEEEecccc
Confidence 3479999984 3345544444 46777777653
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=5.3e-10 Score=102.71 Aligned_cols=194 Identities=16% Similarity=0.278 Sum_probs=144.2
Q ss_pred cCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEE
Q 011368 41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120 (487)
Q Consensus 41 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~ 120 (487)
.|...|+|....||.++||+...++.. .++.+...+.+-. .+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~---------------------~e~~p~~~~s~t~---------------~~~~ 45 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQ---------------------QEFAPIASLSGTC---------------TYTK 45 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceee---------------------eeeccchhccCcc---------------eeEE
Confidence 355689999999999999999887652 2233333333222 2222
Q ss_pred EE------e------------cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 121 WC------A------------APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 121 ~~------~------------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
|. | +.+-..++-|...|.|.+|++..+++.....
T Consensus 46 w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~s---------------------------- 97 (541)
T KOG4547|consen 46 WGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLS---------------------------- 97 (541)
T ss_pred EEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEe----------------------------
Confidence 21 1 2244567778899999999999988765421
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
-.+|.++|+++.++.+-..|.++ .|+.+..|+.. ..+...+ ..+....+.+++.
T Consensus 98 -----------------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~-------~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 98 -----------------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI-------WKEQKPLVSSLCI 152 (541)
T ss_pred -----------------cCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee-------eccCCCccceEEE
Confidence 26899999999999999999999 99999999998 4555543 3556677899999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-----CCEEEEEeC--C
Q 011368 262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY--M 334 (487)
Q Consensus 262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-----~~~l~s~~d--~ 334 (487)
+|+| .++++++ +.|++||+++++.+ ..|.+ |.+.|+++.|.-+ |.+++++.. .
T Consensus 153 s~D~-~~l~~as--~~ik~~~~~~kevv----~~ftg-------------h~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 153 SPDG-KILLTAS--RQIKVLDIETKEVV----ITFTG-------------HGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred cCCC-CEEEecc--ceEEEEEccCceEE----EEecC-------------CCcceEEEEEEEeccccccceeeecccccc
Confidence 9999 8998876 47999999998866 67776 4789999999876 788887643 6
Q ss_pred eEEEEeCCC
Q 011368 335 NLKLWDIRM 343 (487)
Q Consensus 335 ~i~iwd~~~ 343 (487)
.+.+|-++.
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 677776653
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.8e-09 Score=102.68 Aligned_cols=177 Identities=16% Similarity=0.115 Sum_probs=102.3
Q ss_pred CCceeEEEeCCCCCEEEEe--cCC----eEEEEEccCC--CceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-C
Q 011368 204 DFNINSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S 274 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~--~d~----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~ 274 (487)
.+.....+|+|||+.|+.. .+| .+.+|++..+ +....+. ..........+|+|+| +.|+..+ .
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------~~~~~~~~~p~wSPDG-~~Laf~s~~ 301 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------NEAFGTQGNPSFSPDG-TRLVFVSNK 301 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-------cCCCCCcCCeEECCCC-CEEEEEECC
Confidence 3344567999999988875 233 3444666532 2222221 1222334567999999 7777665 4
Q ss_pred CCeEEEEEc--cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEEeCCCCCcee
Q 011368 275 RGFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPV 348 (487)
Q Consensus 275 dg~i~iwd~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iwd~~~~~~~~ 348 (487)
+|...||.+ ...... .+.+.. +...+....|+|||+.|+... + ..|.+||+.+ ++..
T Consensus 302 ~g~~~ly~~~~~~~g~~---~~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~~ 364 (428)
T PRK01029 302 DGRPRIYIMQIDPEGQS---PRLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRDY 364 (428)
T ss_pred CCCceEEEEECcccccc---eEEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCeE
Confidence 665556643 221100 122222 124567889999999988653 2 5799999976 4433
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC---CCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
.+....... ....|+|||++|+..+. ...|+++|+.+++.. .+......+...+++|
T Consensus 365 -~Lt~~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~--~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 365 -QLTTSPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR--KIVIGSGEKRFPSWGA 424 (428)
T ss_pred -EccCCCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCCCcccCceecC
Confidence 332221111 37899999998875433 356888898876432 2223334455666665
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=2e-11 Score=124.79 Aligned_cols=219 Identities=19% Similarity=0.299 Sum_probs=159.2
Q ss_pred ccchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCC
Q 011368 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (487)
+..++|--....++....-...+-..|.++.=+|...+.+||+.||.|++|....++..
T Consensus 2185 ~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--------------------- 2243 (2439)
T KOG1064|consen 2185 PSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--------------------- 2243 (2439)
T ss_pred cccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE---------------------
Confidence 44566655544444444445556778999999999999999999999999998766542
Q ss_pred CcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccc
Q 011368 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (487)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (487)
..++--. ...|+.++| +..|+.+..+..||.+.+|.+...-..
T Consensus 2244 ------~~~rt~g-----------~s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~~------------------ 2286 (2439)
T KOG1064|consen 2244 ------VCFRTAG-----------NSRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPYT------------------ 2286 (2439)
T ss_pred ------EEeeccC-----------cchhhhhhh--cccCCceeeeccCCceeecccCCccee------------------
Confidence 2222211 167899999 478889999999999999998722111
Q ss_pred cccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCceeEEeec
Q 011368 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDM 244 (487)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~ 244 (487)
. ...|.....+..|-. ..++++ +++.+.+||........-+
T Consensus 2287 -----------------------------s-~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v--- 2331 (2439)
T KOG1064|consen 2287 -----------------------------S-WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV--- 2331 (2439)
T ss_pred -----------------------------c-cccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee---
Confidence 1 267888888888864 566663 5789999998744432211
Q ss_pred CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368 245 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 324 (487)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~ 324 (487)
-..|.+.++++++.|.. ++|++|+.+|.|++||+++.++. +.|+. +. .
T Consensus 2332 ----~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~~----------------------~~-~ 2379 (2439)
T KOG1064|consen 2332 ----HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQA----------------------LD-T 2379 (2439)
T ss_pred ----eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhhh----------------------hh-h
Confidence 15799999999999999 99999999999999999987654 22222 33 4
Q ss_pred CCEEEEEeC-CeEEEEeCCCCCceeeeeec
Q 011368 325 GQHLLSRDY-MNLKLWDIRMDSTPVATFKI 353 (487)
Q Consensus 325 ~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~ 353 (487)
..++++|+. |.++||++.. ...+..+..
T Consensus 2380 ~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2380 REYFVTGSSEGNIKIWRLSE-FGLLHTFPS 2408 (2439)
T ss_pred hheeeccCcccceEEEEccc-cchhhcCch
Confidence 568888864 9999999976 556665543
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.1e-09 Score=100.08 Aligned_cols=233 Identities=14% Similarity=0.129 Sum_probs=153.6
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (487)
Q Consensus 36 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (487)
+++.|++|..+.|-- ..+.+.+|+..+.+.. .-+-|. ..
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~----------------------------~~kl~~------------~~ 167 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTI----------------------------QHKLSV------------SG 167 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccce----------------------------eeeeec------------cc
Confidence 688899887654322 3467999997654321 111233 77
Q ss_pred eeEEEEEecCCCcEEEE-----EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 116 INRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
|+.+.++|.|.-..+++ .+.-..|+||...........
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~------------------------------------- 210 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV------------------------------------- 210 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-------------------------------------
Confidence 99999987766666666 345568999988743221110
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEE---Ee-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFV---SA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~---s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 257 (487)
..+.++ ...=..+.|++-|+-|. +. -| .++++.+++ +..+..- -...++|.
T Consensus 211 ----a~ksFF---kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~--------L~k~GPVh 274 (566)
T KOG2315|consen 211 ----ANKSFF---KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVP--------LLKEGPVH 274 (566)
T ss_pred ----hhcccc---ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEe--------cCCCCCce
Confidence 111111 12223567777655332 22 33 357777777 3322211 12468899
Q ss_pred EEEEecCCCCEEEEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C
Q 011368 258 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y 333 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d 333 (487)
++.|+|++ ..++++. .-..+.|||++-.-. ..+. +++=+++-|+|.|++|+.++ .
T Consensus 275 dv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~v-----~df~---------------egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 275 DVTWSPSG-REFAVVYGFMPAKVTIFNLRGKPV-----FDFP---------------EGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred EEEECCCC-CEEEEEEecccceEEEEcCCCCEe-----EeCC---------------CCCccceEECCCCCEEEEeecCC
Confidence 99999999 6665543 467899999986421 2222 35678899999999988653 3
Q ss_pred --CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC------CCcEEEEEeCC
Q 011368 334 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGV 401 (487)
Q Consensus 334 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~------dg~i~iwd~~~ 401 (487)
|.|-|||+.+ .+.+..+..... +-+.|+|||++++|++. |+.++||+...
T Consensus 334 L~G~mEvwDv~n-~K~i~~~~a~~t-----------------t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 334 LPGDMEVWDVPN-RKLIAKFKAANT-----------------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCCceEEEeccc-hhhccccccCCc-----------------eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999999987 888888877665 36899999999998876 68899999863
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.8e-09 Score=94.72 Aligned_cols=289 Identities=14% Similarity=0.179 Sum_probs=163.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEec-----------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEee
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDR-----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE 96 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (487)
.+.|.+ |.-+.|||+.+||+|-+. ...++|||+.+|... +.
T Consensus 246 RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk---------------------------rs 297 (698)
T KOG2314|consen 246 RFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK---------------------------RS 297 (698)
T ss_pred hccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh---------------------------cc
Confidence 344554 889999999999999652 247999999999763 22
Q ss_pred ecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccc
Q 011368 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (487)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (487)
|..-... . ..-.-.+| +.|++++|--.. .+|.||+...-.+...+... -+.+..|.+.+. +.+++.
T Consensus 298 F~~~~~~-------~--~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk-i~gIr~FswsP~-~~llAY 363 (698)
T KOG2314|consen 298 FPVIKSP-------Y--LKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLK-ISGIRDFSWSPT-SNLLAY 363 (698)
T ss_pred eeccCCC-------c--cccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccC-CccccCcccCCC-cceEEE
Confidence 2221100 0 11234678 678898887766 46889887653322221111 122344444433 334443
Q ss_pred cCCCCcceee---eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c----C------CeEEEEEccCCCceeEEe
Q 011368 177 HNPPSFAHGY---HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D----D------LRINLWNLEISDQCFNIV 242 (487)
Q Consensus 177 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~----d------~~i~iwd~~~~~~~~~~~ 242 (487)
.......... .......+.+++. .-+.-.=..+-|-.+|.+|+.- + . ..+-|+.++...-.+..+
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred EcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 3322222211 1112222222221 1111111234566678888763 1 1 124455655333333332
Q ss_pred ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---CCeEEEEEccCCccccccceeecccccccCccccccccccceeEE
Q 011368 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 319 (487)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v 319 (487)
.....|...+|.|.| +.+++-+. ..++++|.+++.......++.+.. ...+.+
T Consensus 443 --------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---------------~~~N~v 498 (698)
T KOG2314|consen 443 --------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---------------KFANTV 498 (698)
T ss_pred --------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc---------------cccceE
Confidence 344678899999999 77766554 357899988853322222333333 467889
Q ss_pred EEcCCCCEEEEEe----CCeEEEEeCCCCCceee-eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC----
Q 011368 320 KFANDGQHLLSRD----YMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---- 390 (487)
Q Consensus 320 ~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~---- 390 (487)
.|+|.|++++.+. .|.+.++|+.. ..... ....|... +.+.|.|.|+|+++++.
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~a----------------t~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFAA----------------TEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEecch-hhhhhccCcccccc----------------ccceECCCCCEEEEeeehhhh
Confidence 9999999998753 38999999864 12111 11222221 58999999999999876
Q ss_pred --CCcEEEEEeC
Q 011368 391 --SNLLRIFSHG 400 (487)
Q Consensus 391 --dg~i~iwd~~ 400 (487)
|.--+||+.+
T Consensus 562 k~d~GYri~tfq 573 (698)
T KOG2314|consen 562 KVDNGYRIFTFQ 573 (698)
T ss_pred ccccceEEEEee
Confidence 3445566665
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=9.1e-10 Score=94.42 Aligned_cols=203 Identities=11% Similarity=0.127 Sum_probs=131.6
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+++++.+.++...|++|-..|++.-+.+...-. ...+.+....|.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~---------- 114 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ---------- 114 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh----------
Confidence 45789999999999999999999998887653321 222345566777
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeee--cCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE--MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|..+-|. ..-.++++.+.|..+.---.+.+....-.. .........+. ....+............
T Consensus 115 --~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-------~~fvGd~~gqvt~lr~~ 183 (404)
T KOG1409|consen 115 --ARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-------YAFVGDHSGQITMLKLE 183 (404)
T ss_pred --cceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-------EEEecccccceEEEEEe
Confidence 889999994 556788999888876543333333221100 00000000000 00011111111111111
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
-+.-... +.+.+|.+.+++++|.|....+++| .|..+.+||+. +.+-.. ..+.+|...|..+...+.- ..
T Consensus 184 ~~~~~~i-~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~------~el~gh~~kV~~l~~~~~t-~~ 254 (404)
T KOG1409|consen 184 QNGCQLI-TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTA------YELQGHNDKVQALSYAQHT-RQ 254 (404)
T ss_pred ecCCceE-EEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCccee------eeeccchhhhhhhhhhhhh-ee
Confidence 1111222 2248999999999999999999999 99999999998 333222 2467899999999888887 89
Q ss_pred EEEEeCCCeEEEEEccCCc
Q 011368 269 LAYSSSRGFVRLVDMRQSA 287 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~ 287 (487)
+.+++.||.|.+|+++..+
T Consensus 255 l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eeeccCCCeEEEEecccee
Confidence 9999999999999998754
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.3e-09 Score=100.21 Aligned_cols=208 Identities=14% Similarity=0.145 Sum_probs=145.5
Q ss_pred CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD 204 (487)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
+...++|....||.+++|+...++............-.+ ....|. .+.....
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~----------------------~~~~w~------L~~~~s~ 54 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTC----------------------TYTKWG------LSADYSP 54 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcc----------------------eeEEEE------EEeccch
Confidence 456789999999999999999887665432211110000 000111 0001111
Q ss_pred CceeEEEe----CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368 205 FNINSISN----NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 279 (487)
Q Consensus 205 ~~v~~i~~----s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 279 (487)
....++.+ +.+...++-| ..|.|.+|++..++...++ .-..|.+.|.++.++.+- ..|.+++.|+.+.
T Consensus 55 ~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 55 MKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL------STDKHYGNVNEILDAQRL-GCIYSVGADLKVV 127 (541)
T ss_pred HHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEE------ecCCCCCcceeeeccccc-CceEecCCceeEE
Confidence 11112111 3355577778 9999999999955443332 235799999999999887 8999999999999
Q ss_pred EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccccc
Q 011368 280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP 359 (487)
Q Consensus 280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 359 (487)
.|+....... +.+... ...+.+++.+|||..+++++ +.|++||+++ .+.+..|.+|..++
T Consensus 128 ~~~~~~~~~~----~~~~~~-------------~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-kevv~~ftgh~s~v- 187 (541)
T KOG4547|consen 128 YILEKEKVII----RIWKEQ-------------KPLVSSLCISPDGKILLTAS-RQIKVLDIET-KEVVITFTGHGSPV- 187 (541)
T ss_pred EEecccceee----eeeccC-------------CCccceEEEcCCCCEEEecc-ceEEEEEccC-ceEEEEecCCCcce-
Confidence 9999987655 666652 45789999999999999988 8999999997 99999999999876
Q ss_pred ccccccCCCCcceeeEEEEcCC-----CCEEEE-EcCCCcEEEEEeCC
Q 011368 360 KLCDLYNNDSIFDKFECSVSGD-----GLHFAT-GSYSNLLRIFSHGV 401 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~s~d-----~~~l~s-g~~dg~i~iwd~~~ 401 (487)
.++.|--+ |.++.+ ...+..+.+|-+..
T Consensus 188 --------------~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 188 --------------RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --------------EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 46666655 666554 44556788888765
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=5.8e-10 Score=108.88 Aligned_cols=150 Identities=15% Similarity=0.251 Sum_probs=121.2
Q ss_pred EEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccccee
Q 011368 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (487)
Q Consensus 38 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~ 117 (487)
+.++++.-++++|+.-+.|.+|+....+.. .-+.||+ +.|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------------~~l~GHe------------G~iF 179 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP---------------------------IRLKGHE------------GSIF 179 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCc---------------------------ceecccC------------CceE
Confidence 345677778999999999999998733221 1478898 9999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (487)
Q Consensus 118 ~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (487)
++.| +.||.++++.+.|+++|+|++++.+...-
T Consensus 180 ~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--------------------------------------------- 212 (967)
T KOG0974|consen 180 SIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGC--------------------------------------------- 212 (967)
T ss_pred EEEE--ccCCcEEEEEecCcceeeeecccccccCc---------------------------------------------
Confidence 9999 68999999999999999999998864431
Q ss_pred eecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC-CcEEEEEEecCCCCEEEEEeCC
Q 011368 198 VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 198 ~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d 275 (487)
..-+|..+|..+.|.|+ .++++ .|.+.++|+.+ .. .+. .+.+|. ..++.++..+.. ..+++++.|
T Consensus 213 -~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~-~l~-------~y~~h~g~~iw~~~~~~~~-~~~vT~g~D 279 (967)
T KOG0974|consen 213 -TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GT-QLE-------VYDEHSGKGIWKIAVPIGV-IIKVTGGND 279 (967)
T ss_pred -ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cc-eeh-------hhhhhhhcceeEEEEcCCc-eEEEeeccC
Confidence 02689999999999988 78887 99999999776 22 222 245554 578999999988 899999999
Q ss_pred CeEEEEEccCC
Q 011368 276 GFVRLVDMRQS 286 (487)
Q Consensus 276 g~i~iwd~~~~ 286 (487)
+.+++||+.+.
T Consensus 280 s~lk~~~l~~r 290 (967)
T KOG0974|consen 280 STLKLWDLNGR 290 (967)
T ss_pred cchhhhhhhcc
Confidence 99999998874
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=2e-10 Score=97.05 Aligned_cols=251 Identities=16% Similarity=0.177 Sum_probs=142.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc---eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+.|++|.| ...|.++++|...|.|.++.-.... .+.+...+.. ..++.+...
T Consensus 27 d~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQsh----------------------e~EFDYLkS- 81 (460)
T COG5170 27 DKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSH----------------------ELEFDYLKS- 81 (460)
T ss_pred ceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhccc----------------------ccchhhhhh-
Confidence 67999999 6778999999988999998755432 1100000000 000000000
Q ss_pred eccceeeeecccCCCceeEEEeCCCC---CEEEEecCCeEEEEEccCCCce-----------------------------
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDC---ETFVSADDLRINLWNLEISDQC----------------------------- 238 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~---~~l~s~~d~~i~iwd~~~~~~~----------------------------- 238 (487)
-.-...|..+.|..++ .+|+++.|.+|++|.+......
T Consensus 82 ----------leieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lpr 151 (460)
T COG5170 82 ----------LEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPR 151 (460)
T ss_pred ----------ccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccc
Confidence 1123457788886542 3556669999999988632100
Q ss_pred ----eEEeecCCCC--CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc
Q 011368 239 ----FNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 312 (487)
Q Consensus 239 ----~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 312 (487)
..++-.++.. -..|.-.|.++.|+.+. ..+++ ..|-.|.+|++.-..... .+... .+..+.+.
T Consensus 152 ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sF---nIVDi------KP~nmeeL 220 (460)
T COG5170 152 LSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSF---NIVDI------KPHNMEEL 220 (460)
T ss_pred ccccceEEEeccceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCce---EEEec------cCccHHHH
Confidence 0111122221 24566778899999886 55554 467789999887543211 11111 01112222
Q ss_pred ccceeEEEEcCCCC--EEEEEeCCeEEEEeCCCCCceeee---eecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368 313 IASISDIKFANDGQ--HLLSRDYMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 387 (487)
Q Consensus 313 ~~~v~~v~~s~~~~--~l~s~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 387 (487)
..-|++..|+|... ++.+.+.|.|++-|++...-+... +......+.+ ++ -.+.+..+.++.|+++|++|++
T Consensus 221 teVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~--~f-f~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 221 TEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV--DF-FEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred HHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc--hh-HHHHhhhhcceEEcCCCcEEEE
Confidence 34678889998754 334556699999999842211111 1100000000 00 0011223358999999999997
Q ss_pred EcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 388 GSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 388 g~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
-+. .+++|||++..+..+.++.-|..
T Consensus 298 Rdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 298 RDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred ecc-ceEEEEecccccCCceeechHHH
Confidence 776 48999999988777777766543
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.23 E-value=4.5e-09 Score=87.19 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=156.7
Q ss_pred EEEEcC-----CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 37 AIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 37 ~~~~s~-----~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
.+.|-| ...+||.|+..|...+|...+.+.. ......|.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h--------------------------~~~cd~sn---------- 115 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH--------------------------LYQCDVSN---------- 115 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccc--------------------------eeeecccc----------
Confidence 355555 2358899999999999998876542 22222233
Q ss_pred cccceeEEE-EEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 112 IEEKINRVR-WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 112 ~~~~I~~v~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..|+-+. .+ .....+..++.|.++++.++..+.....
T Consensus 116 --n~v~~~~r~c--d~~~~~~i~sndht~k~~~~~~~s~~~~-------------------------------------- 153 (344)
T KOG4532|consen 116 --NDVTLVKRYC--DLKFPLNIASNDHTGKTMVVSGDSNKFA-------------------------------------- 153 (344)
T ss_pred --cchhhhhhhc--ccccceeeccCCcceeEEEEecCcccce--------------------------------------
Confidence 1121111 10 1122467788999999999987653322
Q ss_pred eccceeeeecccCCC--ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 191 TENMATKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~--~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
.|.. .+.++++++|++++++- +...|..|.+........-+ ......+.-.+..|+... .
T Consensus 154 -----------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~ 216 (344)
T KOG4532|consen 154 -----------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-L 216 (344)
T ss_pred -----------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-c
Confidence 2322 27889999999999987 88999999998655433222 122233445788999988 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC--EEEEEe-CCeEEEEeCCCC
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~-d~~i~iwd~~~~ 344 (487)
.+|++..||++.|||++...........- -+.|.+.++.+.|++-|. +|+... -+.+.+-|+++
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sst------------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~- 283 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISST------------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN- 283 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhccc------------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-
Confidence 99999999999999999865331111111 123789999999998664 444454 38999999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+....+........ .....+++..+|+.++.-+.+.+++ .+.-|++...
T Consensus 284 ~~~~q~I~i~~d~~~-------~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVER-------KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred CceeeEEecCccccc-------cccccccccccccCCCcccccccch-hhheeecccc
Confidence 444433332222100 0011123477888877777666665 4555666543
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=3e-09 Score=89.43 Aligned_cols=202 Identities=17% Similarity=0.201 Sum_probs=132.6
Q ss_pred eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
-.++.| ++.+..++++-.+|.+.+-+.....++...
T Consensus 124 ~lslD~--~~~~~~i~vs~s~G~~~~v~~t~~~le~vq------------------------------------------ 159 (339)
T KOG0280|consen 124 ALSLDI--STSGTKIFVSDSRGSISGVYETEMVLEKVQ------------------------------------------ 159 (339)
T ss_pred eeEEEe--eccCceEEEEcCCCcEEEEecceeeeeecc------------------------------------------
Confidence 345667 456777888888998886665554433321
Q ss_pred eeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 196 TKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
....|+-.++...|+. +.+++.+| +|+.+..||++.++..+. +...-|...|.++.-+|..+.+|++|+
T Consensus 160 ---~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~------~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 160 ---TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW------HNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ---cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee------ecceeeecceEEEecCCCCCceEEEec
Confidence 1378999999999975 45788888 999999999996554432 124568889999999887669999999
Q ss_pred CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEEEeCCeEEEEeCCCCC-c---e
Q 011368 274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDS-T---P 347 (487)
Q Consensus 274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~~d~~i~iwd~~~~~-~---~ 347 (487)
.|..|++||.|+-.. ..++. ...+.|+.+.++|.- ..|+++..+-.+|-+..... + .
T Consensus 231 YDe~i~~~DtRnm~k-----Pl~~~------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~ 293 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGK-----PLFKA------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIV 293 (339)
T ss_pred cccceeeeehhcccC-----ccccC------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhee
Confidence 999999999996331 11222 113689999999853 35566666666777665321 1 1
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEE-EEEeCCC
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR-IFSHGVG 402 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~-iwd~~~~ 402 (487)
....+.|.... ..-.|..-..+|||++ .|+.++ +|-..++
T Consensus 294 ~~s~~~hdSl~---------------YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 294 LPSDKIHDSLC---------------YGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eecccccccee---------------eccccccccceeeeeeccccceeeeeeeccC
Confidence 22233343211 1233322235678765 577755 7766655
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=3.5e-10 Score=105.90 Aligned_cols=237 Identities=8% Similarity=0.064 Sum_probs=159.5
Q ss_pred cCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEee------c-CCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 202 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD------M-KPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~------~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
.......|+.|+.+..+|++| .||.+++..+.+.....+.-. + -.+++++|+..|.-+.|+.+. +.|.++.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence 345668899999999999999 999999998875432211110 0 024789999999999999998 8999999
Q ss_pred CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCcee--ee
Q 011368 274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPV--AT 350 (487)
Q Consensus 274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~--~~ 350 (487)
.+|.|.+|-+-.+..+...+..- ..+-|.+++|+.||..+... .||.|.+=.+. +..+ +.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnR---------------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd--GNRIwgKe 153 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNR---------------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD--GNRIWGKE 153 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCc---------------CccEEEEEEEcCCCcEEEEEEccCCEEEEeec--cceecchh
Confidence 99999999998887552211111 14679999999999988876 57888887775 3222 23
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee------EEEeccC----Cccccce
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG------ITVEAGK----NENRKPI 420 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~------~~~~~~~----~~v~~~~ 420 (487)
+++... ..+.||+|.+.+..+-.+|.+.+||.+..=... ....+-. ..+....
T Consensus 154 Lkg~~l-----------------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 154 LKGQLL-----------------AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred cchhec-----------------cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 333322 378999999999999999999999976421111 1111100 0111221
Q ss_pred E-------eeCCccccccccceeeecccce-ecC-CCCCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368 421 L-------QAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 479 (487)
Q Consensus 421 ~-------~~~~~~~~~~~~~l~~g~~~~~-~~w-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~ 479 (487)
+ .|. +... |+.+..+|. .+- +.........+..-.|....|+++|..||+++.
T Consensus 217 w~~g~~~~v~p-drP~-----lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 217 WNTGPYQPVPP-DRPR-----LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred eccCccccCCC-CCCE-----EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccC
Confidence 1 111 2222 788888887 555 233333333444467889999999999998873
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=5.7e-08 Score=87.98 Aligned_cols=252 Identities=12% Similarity=0.098 Sum_probs=143.0
Q ss_pred EcCCCCEEEEEec----------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC-ccccccc
Q 011368 40 FDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE-PEFDYLK 108 (487)
Q Consensus 40 ~s~~~~~l~~g~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~~~~~ 108 (487)
+||||+.|+.+.. +..|.+||..+.+.. ..+.--. |+|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~---------------------------~~i~~p~~p~~~--- 102 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI---------------------------ADIELPEGPRFL--- 102 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE---------------------------eEEccCCCchhh---
Confidence 9999998877655 789999999988652 2222110 0000
Q ss_pred ccccccceeEEEEEecCCCcEEEEEe-C-CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
.......+++ ++||++++... . +..|.+.|+.+++......... +...|...+......+.........
T Consensus 103 ---~~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 103 ---VGTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred ---ccCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----CcEEEEecCCccEEEeecCceEEEE
Confidence 0012235666 68999988775 3 7899999999998776543321 2223333333333333322222211
Q ss_pred eeeeec--cceeeeecccCCCceeE-EEeCC-CCCEEEEecCCeEEEEEccCCC----ceeEEeecCCCCCCCCCCcEEE
Q 011368 187 HLEWTE--NMATKVYPHAHDFNINS-ISNNS-DCETFVSADDLRINLWNLEISD----QCFNIVDMKPSNMDDLTEVITS 258 (487)
Q Consensus 187 ~~~~~~--~~~~~~~~~~~~~~v~~-i~~s~-~~~~l~s~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~ 258 (487)
...-.. ...... +......+.. -.+.+ +|+.+..+..|+|.+.|+...+ ..+.++......-.-..+.+.-
T Consensus 174 ~d~~g~~~~~~~~v-f~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 174 YGTKGNPKIKPTEV-FHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred ecCCCceEEeeeee-ecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 111000 000000 1110111100 03345 8889988855999999975332 1222211100000012234455
Q ss_pred EEEecCCCCEEEEEe----------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-E
Q 011368 259 AEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-H 327 (487)
Q Consensus 259 v~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~ 327 (487)
++++|++ +.+++.. ..+.|.++|..+++.. ..+.. ...+..++++||++ +
T Consensus 253 ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~v--------------G~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 253 VAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIEL--------------GHEIDSINVSQDAKPL 313 (352)
T ss_pred EEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeC--------------CCceeeEEECCCCCeE
Confidence 9999999 6666642 2258999999998765 44443 25789999999999 7
Q ss_pred EEEEe--CCeEEEEeCCCCCceeeee
Q 011368 328 LLSRD--YMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 328 l~s~~--d~~i~iwd~~~~~~~~~~~ 351 (487)
|++.. ++.|.++|..+ .+.+..+
T Consensus 314 lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred EEEeCCCCCcEEEEECcC-CeEEeee
Confidence 77654 48999999987 7777777
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.15 E-value=3.2e-07 Score=82.54 Aligned_cols=172 Identities=22% Similarity=0.327 Sum_probs=125.5
Q ss_pred EcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeE
Q 011368 40 FDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (487)
Q Consensus 40 ~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~ 118 (487)
|++ +|.+++..++ |...|.+...+- ..--+|. +.|.-
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~-----------------------------~iqv~~~------------~~VrY 364 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGY-----------------------------SIQVGKK------------GGVRY 364 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCe-----------------------------eEEcCCC------------CceEE
Confidence 444 6888888875 677777654442 1123444 67888
Q ss_pred EEEEecCCCcEEEEEeCCC-cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368 119 VRWCAAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (487)
Q Consensus 119 v~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (487)
.++ ..+++-++.|..|| .+-++|..+++.+.+
T Consensus 365 ~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~kr~--------------------------------------------- 397 (668)
T COG4946 365 RRI--QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI--------------------------------------------- 397 (668)
T ss_pred EEE--ccCCcceEEeccCCceEEEEecCCceEEEe---------------------------------------------
Confidence 888 45666888999998 899999999987765
Q ss_pred eecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368 198 VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 276 (487)
Q Consensus 198 ~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 276 (487)
...-+.|.++..+|+|+.++.+ ....|.+.|++++.. . +++ +...+-|+.++|+|++ .+||.+--+|
T Consensus 398 ---e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~-~id------kS~~~lItdf~~~~ns-r~iAYafP~g 465 (668)
T COG4946 398 ---EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-R-LID------KSEYGLITDFDWHPNS-RWIAYAFPEG 465 (668)
T ss_pred ---eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-e-Eec------ccccceeEEEEEcCCc-eeEEEecCcc
Confidence 5667889999999999999999 888999999995432 2 211 2234569999999999 9999987765
Q ss_pred ----eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 277 ----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 277 ----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
.|+++|+.+++.. ..-.. .+.=.+-+|.||+++|.-
T Consensus 466 y~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 466 YYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCCCcEEEE
Confidence 6999999997643 11111 123356688999998763
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=4.1e-10 Score=105.81 Aligned_cols=300 Identities=13% Similarity=0.147 Sum_probs=189.1
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
-.+.+.++..+|.|+-+|.++.-| +.+-|++..-. ..+.+..+..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----------------------ppr~l~h~tp----------- 67 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----------------------PPRWLHHITP----------- 67 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-----------------------CceeeeccCc-----------
Confidence 356788999999999999998776 55668765432 2222222222
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
-.|-.+.|+|.+...+-++......-.+|++....-..+
T Consensus 68 ---w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI-------------------------------------- 106 (1081)
T KOG0309|consen 68 ---WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI-------------------------------------- 106 (1081)
T ss_pred ---chhcceecccCCCCceeEEecCcchhhhhhhhcCCccce--------------------------------------
Confidence 336778898766666666655556667898865432111
Q ss_pred eccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
..++.+|...|+.+.|+|.. ..++++ .|..+..||++.....+... ..-......|+|+-.. ..
T Consensus 107 ------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------~~w~s~asqVkwnyk~-p~ 172 (1081)
T KOG0309|consen 107 ------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------SSWRSAASQVKWNYKD-PN 172 (1081)
T ss_pred ------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-------ecccccCceeeecccC-cc
Confidence 11257999999999999864 567788 99999999999877666442 2233445789999776 44
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEeCCeEEEEeCCCCCc
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDST 346 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~d~~i~iwd~~~~~~ 346 (487)
+++.+..+.|++||++.+... +..+++ |...|+.+.|+.- +..+-+..|++|++||.....+
T Consensus 173 vlasshg~~i~vwd~r~gs~p---l~s~K~-------------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTP---LCSLKG-------------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred hhhhccCCceEEEeccCCCcc---eEEecc-------------cceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 555566778999999987643 133333 4677888888743 3344445679999999865222
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcC-----------CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 415 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----------d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 415 (487)
.-........++ +...+-| .+..+----.++....|+..++...+..+.+|.+.
T Consensus 237 e~~~~vtt~~pi---------------w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~ 301 (1081)
T KOG0309|consen 237 ESKRTVTTNFPI---------------WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV 301 (1081)
T ss_pred ccceeccccCcc---------------eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH
Confidence 111111111111 2223333 22222222233445567777777779999999998
Q ss_pred cccceEeeCC--------ccccccccceeeecccce-ecCCCCCcccccc
Q 011368 416 NRKPILQAAP--------RARRSSLSNLTRGLYRQA-HENSSSGHHELSY 456 (487)
Q Consensus 416 v~~~~~~~~~--------~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~ 456 (487)
|....+.... .... |++=+.|.. ++|..+..+....
T Consensus 302 V~eFlWR~r~e~~~d~d~rdfQ-----LVTWSkD~~lrlWpI~~~i~~~~ 346 (1081)
T KOG0309|consen 302 VLEFLWRKRKECDGDYDSRDFQ-----LVTWSKDQTLRLWPIDSQIQRLC 346 (1081)
T ss_pred HHHHhhhhcccccCCCCcccee-----EEEeecCCceEeeeccHHHHHhh
Confidence 8776665421 1112 788888888 9996654444333
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=3.4e-07 Score=94.51 Aligned_cols=218 Identities=13% Similarity=0.144 Sum_probs=126.8
Q ss_pred cceeEEEEEecCCCcEEEEEeC------CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..-..|+| ..||++||+.+- -+.+|||+-+ |.+....
T Consensus 210 d~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS---------------------------------- 252 (928)
T PF04762_consen 210 DGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS---------------------------------- 252 (928)
T ss_pred CCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc----------------------------------
Confidence 55678899 789999998763 2578999876 4433221
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c---CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
..-.+--.+++|.|.|++||+. . ...|.+|..+ +-+.-+ +.+ .+......|..+.|++
T Consensus 253 -------------E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhge-F~l---~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 253 -------------EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGE-FTL---RFDPEEEKVIELAWNS 314 (928)
T ss_pred -------------ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeee-Eec---CCCCCCceeeEEEECC
Confidence 1112223478999999999997 3 4567777655 322221 211 1234556789999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEEEeC
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDI 341 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~iwd~ 341 (487)
++ ..||....|. |.+|-..+-....+....+.. ...+..+.|+|... .|.... .|.+..+++
T Consensus 315 ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 315 DS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 99 9999987665 999988875432211112222 23345588887543 233332 255544433
Q ss_pred C----CC-------Cceeeeeeccccc--------ccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 342 R----MD-------STPVATFKIHEHL--------RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 342 ~----~~-------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
. .. ...+..+.+..-. +|.-...+.-..-..|.+++|++++..+++-..||.|.+|.....
T Consensus 379 ~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 379 AWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 1 10 0122222222211 111111111111123469999999988999999999999996553
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=2.6e-09 Score=91.73 Aligned_cols=248 Identities=9% Similarity=0.056 Sum_probs=173.1
Q ss_pred eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcc-ccceeEeeecCCCCceeeeeccccc
Q 011368 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAE 170 (487)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
.++..++||. +.|+..... |...-+.+.+.|.++++|--. .++.-..
T Consensus 15 ~ll~~~eG~~------------d~vn~~~l~--~~e~gv~~~s~drtvrv~lkrds~q~wps------------------ 62 (404)
T KOG1409|consen 15 ELLSKIEGSQ------------DDVNAAILI--PKEEGVISVSEDRTVRVWLKRDSGQYWPS------------------ 62 (404)
T ss_pred hhhhhhcCch------------hhhhhheec--cCCCCeEEccccceeeeEEeccccccCch------------------
Confidence 3556678887 778877774 444568999999999999544 3332211
Q ss_pred cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368 171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 249 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 249 (487)
.......+++++.+.++...|+.| +.|++.-+.+...-..... ++..
T Consensus 63 ----------------------------I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~----~r~~ 110 (404)
T KOG1409|consen 63 ----------------------------IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTF----LKDY 110 (404)
T ss_pred ----------------------------hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcch----hhhh
Confidence 013446778999999999999999 9999998877633222211 2345
Q ss_pred CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368 250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329 (487)
Q Consensus 250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 329 (487)
..|...+..+.|+-.. ..+++.+.|..+.---.+.+..+.. ..+.. ..+++.+.-. +..
T Consensus 111 ~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~--Y~~~~----------------~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 111 LAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGG--YNFET----------------PASALQFDAL--YAF 169 (404)
T ss_pred hhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccc--eEeec----------------cCCCCceeeE--EEE
Confidence 6799999999999876 8999999998775555555433211 11111 1111111111 333
Q ss_pred EEeC-CeEEEEeCCC-CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368 330 SRDY-MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 407 (487)
Q Consensus 330 s~~d-~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~ 407 (487)
.|.. |.|.+-.+.. .-.++..+.+|...+ ++++|.|..+.|.+|..|..+.+||+--.+....
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~---------------~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~ 234 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEV---------------TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY 234 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccce---------------EEEEEcCCCcEEEeccccCceEEEeccCCcceee
Confidence 4443 5555544432 145677888888755 6999999999999999999999999998888899
Q ss_pred EEeccCCccccceEeeCCccccccccceeeecccce-ecC
Q 011368 408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w 446 (487)
++.+|.+.|..+...+ -.+. +.+.+.|+. .+|
T Consensus 235 el~gh~~kV~~l~~~~--~t~~-----l~S~~edg~i~~w 267 (404)
T KOG1409|consen 235 ELQGHNDKVQALSYAQ--HTRQ-----LISCGEDGGIVVW 267 (404)
T ss_pred eeccchhhhhhhhhhh--hhee-----eeeccCCCeEEEE
Confidence 9999999999888776 3334 889999998 888
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.14 E-value=1.3e-09 Score=95.66 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=67.7
Q ss_pred ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368 201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 279 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 279 (487)
.+|-+.+++++|+||+++|+++ .|..|++-..... -.+.. -.-||...|..++.-++ ..|++++.|++|+
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~Ies------fclGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIES------FCLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhh------hccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 7999999999999999999999 9999999877632 22221 13579999999999887 5799999999999
Q ss_pred EEEccCCccc
Q 011368 280 LVDMRQSALC 289 (487)
Q Consensus 280 iwd~~~~~~~ 289 (487)
+||+++++.+
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999999865
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=1.3e-07 Score=99.47 Aligned_cols=186 Identities=13% Similarity=0.130 Sum_probs=105.9
Q ss_pred eEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecC-CCCCCC------CCCcEEEEEEecCCCC-EEEEEeCCCe
Q 011368 208 NSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK-PSNMDD------LTEVITSAEFHPIYCN-LLAYSSSRGF 277 (487)
Q Consensus 208 ~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~------~~~~v~~v~~~p~~~~-~l~~~~~dg~ 277 (487)
..++++| ++.++++. .++.|++||...+ ......... .....+ .-.....++++|++ . ++++-+.++.
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g-~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-~~LYVADs~n~~ 763 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDG-VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL-KELYIADSESSS 763 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCC-eEEEEecCCccccCCCCccccccccCccEEEEeCCC-CEEEEEECCCCe
Confidence 5789999 45555665 8899999998743 222111000 000111 11245779999998 6 5555566799
Q ss_pred EEEEEccCCccccccceeecccccc--cCcccccc--------ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 278 VRLVDMRQSALCDHSARILRDAAES--HGSKSFFT--------EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 278 i~iwd~~~~~~~~~~~~~~~~h~~~--~~~~~~~~--------~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
|++||+.++... ...+ ... +.....+. ..-.....++++++|..+++-. ++.|++||..+ +.
T Consensus 764 Irv~D~~tg~~~-----~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~ 836 (1057)
T PLN02919 764 IRALDLKTGGSR-----LLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR 836 (1057)
T ss_pred EEEEECCCCcEE-----EEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence 999999876421 1110 000 00000000 0012346889999998766654 49999999875 43
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
.. .+.+....-.. ..............++++++|+.+++-+.++.|++||+.+++.
T Consensus 837 v~-tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 VT-TLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EE-EEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 33 33221100000 0000000111225899999999999989999999999998754
No 277
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.14 E-value=4.5e-08 Score=88.67 Aligned_cols=282 Identities=11% Similarity=0.099 Sum_probs=164.4
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecC---------------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCccee
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRG---------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY 93 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~d---------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (487)
+.|. .|..+.|||.++||.+=+.. +.+.+||..++..
T Consensus 69 ~~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i--------------------------- 120 (561)
T COG5354 69 FRHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI--------------------------- 120 (561)
T ss_pred eecC-CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee---------------------------
Confidence 3344 48999999999999986533 3489999988865
Q ss_pred EeeecCCCcccccccccccccc--ee-EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCC-Cceeeeecccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEK--IN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF-PFVSSENTLLA 169 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~--I~-~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~ 169 (487)
+..+.+-. .+ .. -+.| +.+++++|-. ....+.|+++ ++........... ..+..+.+.+.
T Consensus 121 v~sf~~~~------------q~~~~Wp~~k~--s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 121 VFSFNGIS------------QPYLGWPVLKF--SIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred EeeccccC------------Ccccccceeee--eecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 34444433 22 33 5677 4566665544 3346889987 4433322211111 33444555443
Q ss_pred -ccccccccC---CCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe------------cCCeEEEEEcc
Q 011368 170 -EKNFMNEHN---PPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA------------DDLRINLWNLE 233 (487)
Q Consensus 170 -~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~------------~d~~i~iwd~~ 233 (487)
++..++... .+.................+. .-....=..+.|.+.|++|..- ....++|+++.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 222212111 111111111111111111111 0011112356788888877652 12457777776
Q ss_pred CCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe--CCCeEEEEEccCCccccccceeecccccccCccccccc
Q 011368 234 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 311 (487)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 311 (487)
... +.. .....++|...+|.|.+ +.+++.+ .+-.+.++|++..- . ..+.
T Consensus 264 e~~--i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~Nl-~----~~~P-------------- 314 (561)
T COG5354 264 ERS--IPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGNL-R----FYFP-------------- 314 (561)
T ss_pred ccc--cce-------eccccccceeeeecccC-CceeEEecccccceeecccccce-E----EecC--------------
Confidence 222 211 11456889999999998 6666555 57889999998762 1 1111
Q ss_pred cccceeEEEEcCCCCEEEEEe--C--CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368 312 IIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 387 (487)
Q Consensus 312 ~~~~v~~v~~s~~~~~l~s~~--d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 387 (487)
+..=+.+.|+|.+++++.++ . |.+-+||.......+..+.+... .-+.|+||++++.+
T Consensus 315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-----------------s~~~wspd~qF~~~ 376 (561)
T COG5354 315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-----------------SYCDWSPDGQFYDT 376 (561)
T ss_pred -CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc-----------------eEeeccCCceEEEe
Confidence 23457788999999998753 2 99999998753334445555543 25789999999887
Q ss_pred EcC------CCcEEEEEeCCC
Q 011368 388 GSY------SNLLRIFSHGVG 402 (487)
Q Consensus 388 g~~------dg~i~iwd~~~~ 402 (487)
... |..|.|||+...
T Consensus 377 ~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 377 DTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cCCCcccccCcceEEEEecCc
Confidence 643 788999999753
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=8.4e-08 Score=86.16 Aligned_cols=149 Identities=14% Similarity=0.239 Sum_probs=114.4
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCC-cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
-++.|...|.-..+..+++-++.|..|| .+-|+|.++++. ..+...-
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------------------------kr~e~~l---- 401 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------------------------KRIEKDL---- 401 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE----------------------------EEeeCCc----
Confidence 3566788899999999988999999999 899999998863 3344444
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
+.|.++.. +++|++++.+.....+.+.|++++....+.
T Consensus 402 --------g~I~av~v--s~dGK~~vvaNdr~el~vididngnv~~id-------------------------------- 439 (668)
T COG4946 402 --------GNIEAVKV--SPDGKKVVVANDRFELWVIDIDNGNVRLID-------------------------------- 439 (668)
T ss_pred --------cceEEEEE--cCCCcEEEEEcCceEEEEEEecCCCeeEec--------------------------------
Confidence 77999999 689999999999899999999999866542
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
....+-|+.+.|+|++++||.+ -+ ..|+++|+. +++...+. ...+.=.+-+
T Consensus 440 ---------------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~vT--------T~ta~DfsPa 495 (668)
T COG4946 440 ---------------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYDVT--------TPTAYDFSPA 495 (668)
T ss_pred ---------------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEEec--------CCcccccCcc
Confidence 4456779999999999999997 54 468999999 55555431 1222234567
Q ss_pred EecCCCCEEEEEeC
Q 011368 261 FHPIYCNLLAYSSS 274 (487)
Q Consensus 261 ~~p~~~~~l~~~~~ 274 (487)
|.|++ ++|..-+.
T Consensus 496 FD~d~-ryLYfLs~ 508 (668)
T COG4946 496 FDPDG-RYLYFLSA 508 (668)
T ss_pred cCCCC-cEEEEEec
Confidence 88998 77766543
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.09 E-value=7.2e-07 Score=80.95 Aligned_cols=234 Identities=11% Similarity=0.049 Sum_probs=121.8
Q ss_pred eCCCCCEEEEe-c----------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-C-CCeE
Q 011368 212 NNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S-RGFV 278 (487)
Q Consensus 212 ~s~~~~~l~s~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~-dg~i 278 (487)
++||++.|+.+ . +..|.+||..+.. ....+.+++............++++|+| ++|++.. . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-~~~~i~~p~~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-PIADIELPEGPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-EEeEEccCCCchhhccCccceEEECCCC-CEEEEecCCCCCEE
Confidence 89999999887 5 6899999999554 3433322211000012234578999999 8888766 3 6899
Q ss_pred EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCcee-eeeec-ccc
Q 011368 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV-ATFKI-HEH 356 (487)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~-~~~~~-~~~ 356 (487)
.+.|+.+++.+ ..+.. .. ...+--.++..+++-|.||......+...++.. ..... +..
T Consensus 131 ~VvD~~~~kvv----~ei~v--------------p~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~ 191 (352)
T TIGR02658 131 GVVDLEGKAFV----RMMDV--------------PD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPE 191 (352)
T ss_pred EEEECCCCcEE----EEEeC--------------CC-CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCC
Confidence 99999998755 33332 01 111111223333344444444444443323311 00000 000
Q ss_pred cccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCce----eEEEecc-------CCccccceEeeC
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAG----GITVEAG-------KNENRKPILQAA 424 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~-------~~~v~~~~~~~~ 424 (487)
.+.++ ..-.|++ +|+++.+... |+|.+.|+...+.. ...+... ..-...+++.+
T Consensus 192 ----------~~~v~--~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~- 257 (352)
T TIGR02658 192 ----------DEYLI--NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR- 257 (352)
T ss_pred ----------ccccc--cCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-
Confidence 00111 1124455 8888877666 99999997553221 1111110 11112355554
Q ss_pred Cccccccccceee-e--cc-----cce-ecC--CCC-CccccccccCCCeEEEEEcCCCC-EEEEec--CCeEEEEe
Q 011368 425 PRARRSSLSNLTR-G--LY-----RQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLFFHY 486 (487)
Q Consensus 425 ~~~~~~~~~~l~~-g--~~-----~~~-~~w--~~~-~~~~~~~~~~~~v~~~~~spd~~-~la~~s--~~~~~i~~ 486 (487)
+++. +.. . .. ++. ++| +.. ............+..++++||++ +|.+.+ .+.+.++.
T Consensus 258 -dg~~-----lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 258 -ARDR-----IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred -CCCE-----EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 3333 332 1 11 222 555 221 12222334456888999999999 777666 44577765
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=1.7e-09 Score=101.80 Aligned_cols=297 Identities=15% Similarity=0.163 Sum_probs=186.1
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
+---+++.++++.++.. +|.|+-++.++.-| +.+-|+...-..
T Consensus 16 ~kslsl~v~~~~~a~si--~p~grdi~lAsr~g-l~i~dld~p~~p---------------------------------- 58 (1081)
T KOG0309|consen 16 GKSLSLKVDGGFNAVSI--NPSGRDIVLASRQG-LYIIDLDDPFTP---------------------------------- 58 (1081)
T ss_pred CceeEEEecCcccceee--ccccchhhhhhhcC-eEEEeccCCCCC----------------------------------
Confidence 33344555688899998 46677788888776 445566542100
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCC---CCEEEEecCCeEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEE
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSD---CETFVSADDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
.+-+..-..-.|-...|+|. ...+++.....-.+|++.... +.+.. .+.+|...|+.+.
T Consensus 59 -----------pr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n 121 (1081)
T KOG0309|consen 59 -----------PRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDIN 121 (1081)
T ss_pred -----------ceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccc
Confidence 00000112234556677664 233444455566688886432 33333 2578999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEeCCeEEEE
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDYMNLKLW 339 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~d~~i~iw 339 (487)
|+|+.+..+++++.|-.+..||+++..... ..+.. -...-..+.|+.. +..+|+...+.|++|
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~---ys~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPF---YSTSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCcce---eeeec-------------ccccCceeeecccCcchhhhccCCceEEE
Confidence 999999999999999999999999865331 22222 1245678899854 455555555899999
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 418 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 418 (487)
|++.++.++..+++|...+ ..+.|.. -...+.+.+.||+|+.||.....+..........++..
T Consensus 186 d~r~gs~pl~s~K~~vs~v---------------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~ 250 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSV---------------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR 250 (1081)
T ss_pred eccCCCcceEEecccceee---------------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee
Confidence 9999889999999876543 3566653 23457889999999999998765544444555566666
Q ss_pred ceEeeCCcccc---ccccceeee-cccce-ecC---CCCCccccccccCCCeEEEEEcCCCC----------EEEEecCC
Q 011368 419 PILQAAPRARR---SSLSNLTRG-LYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN----------LIACANGN 480 (487)
Q Consensus 419 ~~~~~~~~~~~---~~~~~l~~g-~~~~~-~~w---~~~~~~~~~~~~~~~v~~~~~spd~~----------~la~~s~~ 480 (487)
..+.|-.+|.. ...++++-- ..+.. ..| .....+..+.+|++.|....|...+. .|++=|.|
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD 330 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD 330 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC
Confidence 66666544432 000000100 11112 445 23345567778998888877765443 46666644
Q ss_pred -eEEEEe
Q 011368 481 -SLFFHY 486 (487)
Q Consensus 481 -~~~i~~ 486 (487)
.+.+|-
T Consensus 331 ~~lrlWp 337 (1081)
T KOG0309|consen 331 QTLRLWP 337 (1081)
T ss_pred CceEeee
Confidence 477774
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=1e-07 Score=90.18 Aligned_cols=197 Identities=13% Similarity=0.085 Sum_probs=116.5
Q ss_pred CcEEEEEEcCCCCE-EEEEec---CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 33 DIVSAIEFDKTGDY-LAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 33 ~~V~~~~~s~~~~~-l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..+....|+|||+. ++..+. +..|.++|+.+++. +.+... .
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------------------------~~lt~~---~------- 232 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------------------------EKIASS---Q------- 232 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------------------------EEEecC---C-------
Confidence 46778999999984 665443 34688888877753 122222 2
Q ss_pred ccccccceeEEEEEecCCCcEEEEE-eCC--CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILS-TND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
+.....+| +|||+.++.. +.+ ..|.++|+.++....+
T Consensus 233 -----g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L--------------------------------- 272 (419)
T PRK04043 233 -----GMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI--------------------------------- 272 (419)
T ss_pred -----CcEEeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEEc---------------------------------
Confidence 44556778 6788776653 333 4677778777764433
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
..+........|+|||+.|+.. ..+ .|++.|+.. +...++. ..+. ....|
T Consensus 273 ---------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~~rlt------~~g~----~~~~~ 326 (419)
T PRK04043 273 ---------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSVEQVV------FHGK----NNSSV 326 (419)
T ss_pred ---------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCeEeCc------cCCC----cCceE
Confidence 2222223345799999887765 333 677778873 3332221 1111 12489
Q ss_pred ecCCCCEEEEEeCC---------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 262 HPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 262 ~p~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
+|+| +.|+..+.. ..|.+.|+.++.. +.+.. ........|+|||+.|+...
T Consensus 327 SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~--------------~~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 327 STYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTA--------------NGVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred CCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCC--------------CCCcCCeEECCCCCEEEEEE
Confidence 9999 777766643 2677778877652 22222 01223578999999887543
Q ss_pred -C---CeEEEEeCCCCCceeeeee
Q 011368 333 -Y---MNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 333 -d---~~i~iwd~~~~~~~~~~~~ 352 (487)
. ..+.+.++. +.....+.
T Consensus 387 ~~~~~~~L~~~~l~--g~~~~~l~ 408 (419)
T PRK04043 387 YLGNQSALGIIRLN--YNKSFLFP 408 (419)
T ss_pred ccCCcEEEEEEecC--CCeeEEee
Confidence 2 346666664 44444444
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.04 E-value=2.5e-07 Score=87.52 Aligned_cols=303 Identities=11% Similarity=0.079 Sum_probs=153.8
Q ss_pred CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (487)
Q Consensus 44 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~ 123 (487)
+..+++++.+|.|.-+|..+++.. -.++-. ..+.. .|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~---------------------------W~~~~~-------------~~~~~---~p 101 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRL---------------------------WRVDLD-------------ERLSG---GV 101 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEe---------------------------eeecCC-------------CCccc---ce
Confidence 567888888999999998888642 111111 11111 11
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
..++..++.++.++.+..+|..+|+.......
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------------------------------------------------ 133 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKL------------------------------------------------ 133 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcEeeeecc------------------------------------------------
Confidence 23466788888999999999988886543211
Q ss_pred CCceeE-EEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 204 DFNINS-ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 204 ~~~v~~-i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
...+.+ ... .+..++.+ .++.++.||.+++....+.- .....+. .... .+.... + ..++.+..++.+..+
T Consensus 134 ~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~-~~~~-~sp~~~-~--~~v~~~~~~g~v~al 205 (377)
T TIGR03300 134 SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALT-LRGS-ASPVIA-D--GGVLVGFAGGKLVAL 205 (377)
T ss_pred CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCcee-ecCC-CCCEEE-C--CEEEEECCCCEEEEE
Confidence 011111 011 23455556 89999999998665544321 1000000 0000 111111 2 367778888999999
Q ss_pred EccCCccccccceeecccccccCccccccccccce-eEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeeccccccc
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRP 359 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 359 (487)
|.++++.. ++.....+....... ....+ ....+. ++ .++.+ .++.++.||..+ ++.+........
T Consensus 206 d~~tG~~~------W~~~~~~~~g~~~~~-~~~~~~~~p~~~-~~-~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~~--- 272 (377)
T TIGR03300 206 DLQTGQPL------WEQRVALPKGRTELE-RLVDVDGDPVVD-GG-QVYAVSYQGRVAALDLRS-GRVLWKRDASSY--- 272 (377)
T ss_pred EccCCCEe------eeeccccCCCCCchh-hhhccCCccEEE-CC-EEEEEEcCCEEEEEECCC-CcEEEeeccCCc---
Confidence 99988643 211000000000000 00000 111121 33 45544 569999999987 666554442111
Q ss_pred ccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec-cCCccccceEeeCCccccccccceeee
Q 011368 360 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRG 438 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~g 438 (487)
..+.. ++..++.++.||.++.+|..+++.. ..... .......... .+.. +..+
T Consensus 273 --------------~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~~~~ssp~i----~g~~-----l~~~ 326 (377)
T TIGR03300 273 --------------QGPAV--DDNRLYVTDADGVVVALDRRSGSEL-WKNDELKYRQLTAPAV----VGGY-----LVVG 326 (377)
T ss_pred --------------cCceE--eCCEEEEECCCCeEEEEECCCCcEE-EccccccCCccccCEE----ECCE-----EEEE
Confidence 12222 4567888889999999999988543 22211 1111111111 1122 6677
Q ss_pred cccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEE
Q 011368 439 LYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFH 485 (487)
Q Consensus 439 ~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~ 485 (487)
+.++. .++ ..++.+....-+...+..--.-.+++ |.+++.| .+|.|
T Consensus 327 ~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 327 DFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence 77777 666 33444433322222222211123344 5555544 58776
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=1.4e-06 Score=91.90 Aligned_cols=189 Identities=10% Similarity=0.095 Sum_probs=107.1
Q ss_pred CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeec-CC--CCCCCC-------CCcEEEEEEecCCCCEEEEE
Q 011368 205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-KP--SNMDDL-------TEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~-~~--~~~~~~-------~~~v~~v~~~p~~~~~l~~~ 272 (487)
.....++++++++.|+.+ .++.|+.+|..+ +. +.++.. .. ....+. -.....++++|++..++++.
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~-~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVN-ET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCC-CE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 345788999988877666 567899999873 32 222210 00 000110 12346899999542677777
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCc--cccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCcee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGS--KSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~ 348 (487)
+.++.|++||..++.. ..+.+....... .......-.....|+++|+|+.|+.++ ++.|++||+.+ +...
T Consensus 702 ~~~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~~ 775 (1057)
T PLN02919 702 AGQHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGSR 775 (1057)
T ss_pred CCCCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcEE
Confidence 7889999999987643 222220000000 000000113467799999998666653 48999999976 3321
Q ss_pred eeeecccccc-cccccccCC------CCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 349 ATFKIHEHLR-PKLCDLYNN------DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 349 ~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+.+..... .....+... ........++++++|..+++-+.++.|++||..++
T Consensus 776 -~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 776 -LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred -EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 111100000 000000000 00111248999999998888999999999999876
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.7e-07 Score=85.18 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=88.5
Q ss_pred CCCceeEEEeCCCCCEEEEe--c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CC-
Q 011368 203 HDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG- 276 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg- 276 (487)
..+......|+|||+.++.. . +..|.++|+.. +....+ ..+........|+|+| +.|+..+. .+
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~-g~~~~L--------T~~~~~d~~p~~SPDG-~~I~F~Sdr~g~ 300 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT-KTLTQI--------TNYPGIDVNGNFVEDD-KRIVFVSDRLGY 300 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-CcEEEc--------ccCCCccCccEECCCC-CEEEEEECCCCC
Confidence 34455667899999887764 3 45688888873 333222 2222223345799999 76766664 33
Q ss_pred -eEEEEEccCCcccccccee-ecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---------CeEEEEeCCCC
Q 011368 277 -FVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---------MNLKLWDIRMD 344 (487)
Q Consensus 277 -~i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---------~~i~iwd~~~~ 344 (487)
.|.+.|+.+++.. +. +.+ . ....|+|||++|+... . ..|.+.|+..
T Consensus 301 ~~Iy~~dl~~g~~~----rlt~~g----------------~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~- 358 (419)
T PRK04043 301 PNIFMKKLNSGSVE----QVVFHG----------------K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS- 358 (419)
T ss_pred ceEEEEECCCCCeE----eCccCC----------------C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-
Confidence 5777777766531 11 111 1 1248999999988542 1 2678888865
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-Cc--EEEEEeCC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NL--LRIFSHGV 401 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~--i~iwd~~~ 401 (487)
+. ...+...... ....|+|||+.|+..+.+ +. +.+.++..
T Consensus 359 g~-~~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 359 DY-IRRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CC-eEECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 33 3333322111 258899999988766543 33 55555543
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=4.2e-08 Score=81.22 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=94.4
Q ss_pred eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-----CCCeEEEEEccC
Q 011368 212 NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQ 285 (487)
Q Consensus 212 ~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-----~dg~i~iwd~~~ 285 (487)
.+--++.++++ .||.+.+.+.+.-..... +.+.-...-.+......+ +.+.++. .-+..+.|+++.
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~-------~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDLALMS-------RIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHHhhhh-------hcccccccccccceeecc-cEEecCCcceEeeccceeeecccc
Confidence 34446778888 999999998874211111 111111111222223333 4444332 123456666665
Q ss_pred CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEEEeCCCCCceeeeeeccccccccccc
Q 011368 286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 363 (487)
Q Consensus 286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
.+.. ...+ .--..|.+++-+|..+.+++ |+ +|.+.+||.+....+...++.|+..+
T Consensus 169 ~~t~------~~~~-----------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i----- 226 (319)
T KOG4714|consen 169 IKTL------IPSK-----------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI----- 226 (319)
T ss_pred cccc------cccc-----------cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh-----
Confidence 4321 1110 00134889999997766654 55 49999999998667778888898865
Q ss_pred ccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCC
Q 011368 364 LYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+.+.|+| ++..|.++++||.+.-||..+
T Consensus 227 ----------~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 227 ----------WEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ----------hheeccCCCchheeEecCCCcEEEEcCCC
Confidence 6899999 788999999999999999875
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=105.59 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=138.7
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.++.=+ |...+.++|+.||.|++|....++.....
T Consensus 2209 ~~v~r~~sH--p~~~~Yltgs~dgsv~~~~w~~~~~v~~~---------------------------------------- 2246 (2439)
T KOG1064|consen 2209 ENVRRMTSH--PSDPYYLTGSQDGSVRMFEWGHGQQVVCF---------------------------------------- 2246 (2439)
T ss_pred CceeeecCC--CCCceEEecCCCceEEEEeccCCCeEEEe----------------------------------------
Confidence 445555554 45678999999999999998877654321
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+ ......|+.+.|+.+|+.+..+ .||.+.+|.+. +. .+. ..+.|+.....+.|-. ..++++
T Consensus 2247 ---r---t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk-~~~-------s~qchnk~~~Df~Fi~---s~~~ta 2308 (2439)
T KOG1064|consen 2247 ---R---TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK-PYT-------SWQCHNKALSDFRFIG---SLLATA 2308 (2439)
T ss_pred ---e---ccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc-cee-------ccccCCccccceeeee---hhhhcc
Confidence 1 2333889999999999999999 99999999988 32 221 3567888888888875 346665
Q ss_pred e---CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368 273 S---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 273 ~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
+ .++.+.+||..-.... ..+-. .|.+.++++++-|..+.|++|+ +|.|++||++. .+.+
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~---s~v~~-------------~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq-rql~ 2371 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMN---SLVHT-------------CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLR 2371 (2439)
T ss_pred ccCCCCCcccchhcccCccc---ceeee-------------ecCCCceEEEEcCcceEEEecCCcCcEEEeehHH-HHHH
Confidence 4 3689999997643211 01113 3578999999999999999987 49999999985 6655
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
..++. +. ...++++|+..|.|+||++..-
T Consensus 2372 h~~~~------------------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2372 HTFQA------------------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred HHhhh------------------------hh-hhheeeccCcccceEEEEcccc
Confidence 55543 12 3568999999999999999865
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=4.2e-06 Score=71.03 Aligned_cols=181 Identities=19% Similarity=0.203 Sum_probs=110.9
Q ss_pred CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC-C-CCCCCcEEEEEEecCC-----CCEEEEEeCC
Q 011368 204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-M-DDLTEVITSAEFHPIY-----CNLLAYSSSR 275 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~-~~~~~~v~~v~~~p~~-----~~~l~~~~~d 275 (487)
...=+-++||||+.+||.+ ..|+|+++|+. +..+..+ ++.. . ......|..+.|-+-. ...|++-..+
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I---~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~ 118 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVI---PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR 118 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEc---CcccccCCccccceeeeEeeccccccccceeEEEEecc
Confidence 3445789999999999999 99999999998 4444432 2211 1 1223567777775431 2467777788
Q ss_pred CeEEEEEccCCcc-ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C-C---------eEEEEeCC
Q 011368 276 GFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-M---------NLKLWDIR 342 (487)
Q Consensus 276 g~i~iwd~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d-~---------~i~iwd~~ 342 (487)
|.++=|-+..+.. -.+....|.. ...+...|.++.++|..++|+.|+ . . -+.-|.+-
T Consensus 119 G~L~Sy~vs~gt~q~y~e~hsfsf----------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL 188 (282)
T PF15492_consen 119 GQLRSYLVSVGTNQGYQENHSFSF----------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRIL 188 (282)
T ss_pred ceeeeEEEEcccCCcceeeEEEEe----------cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEc
Confidence 8887776543211 1111122221 112356899999999988887653 1 1 36778775
Q ss_pred CCCceeeee-eccccccc------c---ccc--c-----cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 343 MDSTPVATF-KIHEHLRP------K---LCD--L-----YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 343 ~~~~~~~~~-~~~~~~~~------~---~~~--~-----~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
. +.+.... ......+. . +.. + ...+.+ ..|..||||+.||+...+|.|.+|++.+-
T Consensus 189 ~-~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i---~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 189 S-DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI---FKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred C-CCCcEEEccccCccccccccccceeeccceeeeeccccCCCce---EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 4 3332221 11111110 0 000 1 123444 59999999999999999999999999875
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=2.5e-06 Score=72.40 Aligned_cols=192 Identities=15% Similarity=0.210 Sum_probs=112.1
Q ss_pred eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
=..++| +||+.+||.+...|+|+++|+.+..+..+....
T Consensus 46 WRkl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~--------------------------------------- 84 (282)
T PF15492_consen 46 WRKLAW--SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM--------------------------------------- 84 (282)
T ss_pred heEEEE--CCCCcEEEEEcCCCeEEEEecccceeEEcCccc---------------------------------------
Confidence 467999 689999999999999999999876554331100
Q ss_pred eeeecccCCCceeEEEeCC-------CCCEEEEecCCeEEEEEccC--CCceeEEeecCCCCCC-CCCCcEEEEEEecCC
Q 011368 196 TKVYPHAHDFNINSISNNS-------DCETFVSADDLRINLWNLEI--SDQCFNIVDMKPSNMD-DLTEVITSAEFHPIY 265 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~s~-------~~~~l~s~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~ 265 (487)
.+...-...|..+.|.+ ..++|+...+|.++-|-+.. .+.-.+... ..+. .+...|.++.++|..
T Consensus 85 --~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs---fsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 85 --SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS---FSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred --ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE---EEecccCCCceeEEEEcCCC
Confidence 00011123344444432 13455555777777776532 111111100 0122 246689999999998
Q ss_pred CCEEEEEeCC-----------CeEEEEEccCCccccccceeecccccccC-cc--------ccc---cccccceeEEEEc
Q 011368 266 CNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILRDAAESHG-SK--------SFF---TEIIASISDIKFA 322 (487)
Q Consensus 266 ~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~-~~--------~~~---~~~~~~v~~v~~s 322 (487)
++|++|+.. ..+.-|.+-++..-...+...+.+..... .. ..+ ......|..|..|
T Consensus 160 -~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 160 -RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred -CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 777777641 13667776665533322222221110000 00 001 1235789999999
Q ss_pred CCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccc
Q 011368 323 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE 355 (487)
Q Consensus 323 ~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~ 355 (487)
|||..||+.. +|.|.+|++.+ -+....++..+
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPs-L~~~~~W~~~e 271 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPS-LRLQRSWKQDE 271 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCc-chhhcccchhh
Confidence 9999999986 59999999976 55555555444
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=5.9e-07 Score=85.70 Aligned_cols=256 Identities=16% Similarity=0.165 Sum_probs=167.5
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.-.++.|+|.| +||.|+. ..|.+-|..+-+. +.++.-|.
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~---------------------------iqsie~h~------------ 55 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQL---------------------------IQSIELHQ------------ 55 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhh---------------------------hhccccCc------------
Confidence 36789999988 6788875 4688888765543 57778888
Q ss_pred cceeEEEEEecC--------C--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 114 EKINRVRWCAAP--------N--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 114 ~~I~~v~~~~~~--------~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|+.|+|.|.+ . .-+|+++...|.|.+||+..+..+.-
T Consensus 56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~------------------------------- 104 (1062)
T KOG1912|consen 56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW------------------------------- 104 (1062)
T ss_pred cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-------------------------------
Confidence 889999998732 1 22456667789999999987754322
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCC---CCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNS---DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 258 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 258 (487)
+..|.+++..++|-+ +.+.+..+ ...++.+|+..++++.++. ........|
T Consensus 105 ----------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--------~ys~~iLs~ 160 (1062)
T KOG1912|consen 105 ----------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY--------DYSHEILSC 160 (1062)
T ss_pred ----------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--------ccCCcceee
Confidence 467788889999854 45444444 7889999999977765542 223345677
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeec---ccccccCc-cccccc--c---------ccceeEEEEcC
Q 011368 259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR---DAAESHGS-KSFFTE--I---------IASISDIKFAN 323 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~h~~~~~~-~~~~~~--~---------~~~v~~v~~s~ 323 (487)
+.++|-.+..+...+..|.+.+.+.-.........+.|+ .|.+.+.. +..-.+ + ......++|+|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 999997767888888888888877654333332223332 22221100 000000 0 01123456788
Q ss_pred CCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC--CCEEEEEcCCCcEEEEEeC
Q 011368 324 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 324 ~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~sg~~dg~i~iwd~~ 400 (487)
.-+.++-.. -..+.++|++- ..++.......+.. --+.+-|+ ...|.++-.||.+.+|-.+
T Consensus 241 ~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred hhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 755444433 37899999986 77777776665532 13555554 4578999999999999887
Q ss_pred C
Q 011368 401 V 401 (487)
Q Consensus 401 ~ 401 (487)
.
T Consensus 305 ~ 305 (1062)
T KOG1912|consen 305 E 305 (1062)
T ss_pred c
Confidence 5
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=2.7e-08 Score=90.86 Aligned_cols=251 Identities=15% Similarity=0.165 Sum_probs=155.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+|++.|..++--.+.+-+++++.|.+|++|.+...-. ......+.-+++.|+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD--------------------~~~tsaCQfTY~aHk------ 784 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD--------------------EIGTSACQFTYQAHK------ 784 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC--------------------ccccceeeeEhhhcc------
Confidence 456888888887666778899999999999999864321 011333567888998
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.+|.++.|. .+-+++ ++.|+.|.+||.--++......-.
T Consensus 785 ------k~i~~igfL--~~lr~i--~ScD~giHlWDPFigr~Laq~~da------------------------------- 823 (1034)
T KOG4190|consen 785 ------KPIHDIGFL--ADLRSI--ASCDGGIHLWDPFIGRLLAQMEDA------------------------------- 823 (1034)
T ss_pred ------Ccccceeee--ecccee--eeccCcceeecccccchhHhhhcC-------------------------------
Confidence 899999995 444444 456889999998766543210000
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
...+..+.|.|+- +-+...+++ | ...+|+++|.+..+..-+. +...-.+.+..+++++..+.|
T Consensus 824 -----------pk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~---kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 824 -----------PKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCEL---KVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred -----------cccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeE---EeccCCCCchheeEEEeccCc
Confidence 0012223343332 113344444 4 7899999999865432221 111234566778999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-EeCCeEEE-EeCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKL-WDIRM 343 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~d~~i~i-wd~~~ 343 (487)
+.++++-.+|.|.+.|.++|+.+ ..|.. .+.....++ .|..+.|+. +.|.++.+ |..-.
T Consensus 889 -N~lAa~LSnGci~~LDaR~G~vI----Nswrp-------------mecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 889 -NKLAAALSNGCIAILDARNGKVI----NSWRP-------------MECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred -chhhHHhcCCcEEEEecCCCcee----ccCCc-------------ccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 99999999999999999999755 33332 012222332 255556664 45678877 87653
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEE-cCCCCEEEEEcCCCcEEEEE
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~sg~~dg~i~iwd 398 (487)
+......+....+. .| -.-|.-|+++...+.+.+|.
T Consensus 950 -gimh~q~kpppepa------------------hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 950 -GIMHLQDKPPPEPA------------------HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred -CeeeeccCCCCcch------------------hhhhccCceeEEeccCcEEEEEe
Confidence 44444443333221 11 11355677777777777775
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=7.9e-09 Score=94.29 Aligned_cols=220 Identities=22% Similarity=0.249 Sum_probs=142.4
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKN 172 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
+..+.||+ +.|..++-. .+.+-+++++.|++|++|.++... ....
T Consensus 728 L~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~t-------------------- 773 (1034)
T KOG4190|consen 728 LCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGT-------------------- 773 (1034)
T ss_pred eecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCcccc--------------------
Confidence 34566777 778777753 456779999999999999987431 1111
Q ss_pred cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368 173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 252 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 252 (487)
..|.-+| ..|..+|.++.|-.+-+.++++ |+.|.+||.-.+....++.+. .-++.
T Consensus 774 --------------------saCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a 828 (1034)
T KOG4190|consen 774 --------------------SACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGA 828 (1034)
T ss_pred --------------------ceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCC
Confidence 1122333 8999999999999888777665 667999997644433222211 11223
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-
Q 011368 253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 331 (487)
Q Consensus 253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~- 331 (487)
...|.|+.-- +.+-.++-++...+|+++|.+..+.. ..++. -. -++....+++++..+.|++++++
T Consensus 829 ~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~----~E~kV-cn-------a~~Pna~~R~iaVa~~GN~lAa~L 895 (1034)
T KOG4190|consen 829 GGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWT----CELKV-CN-------APGPNALTRAIAVADKGNKLAAAL 895 (1034)
T ss_pred CceeEecccC-cchheeeeccchhhheeeecccccce----eeEEe-cc-------CCCCchheeEEEeccCcchhhHHh
Confidence 3345555321 22133444477899999999987643 22322 00 02224678999999999999998
Q ss_pred eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEE-EEeCCC
Q 011368 332 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI-FSHGVG 402 (487)
Q Consensus 332 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~i-wd~~~~ 402 (487)
+.|.|.+.|.++ ++.+..++..+.-. ..++ .|..+.|+....|.++.+ |....+
T Consensus 896 SnGci~~LDaR~-G~vINswrpmecdl---------------lqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 896 SNGCIAILDARN-GKVINSWRPMECDL---------------LQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred cCCcEEEEecCC-CceeccCCcccchh---------------hhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 569999999997 77776655443211 1222 245567777778888888 887766
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.2e-07 Score=83.04 Aligned_cols=328 Identities=15% Similarity=0.117 Sum_probs=199.2
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..-|.+.|+.+.-+ -.+++.+++.||.++.|.-.... ..+++..+..|.
T Consensus 5 symhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL------ 53 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHL------ 53 (558)
T ss_pred hhcccceeeeEeee-hhheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHH------
Confidence 34588888877654 45799999999999999843211 334567777887
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeeeeccccccc--cccccCCCCcce
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN--FMNEHNPPSFAH 184 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 184 (487)
..|.+++. +.++.++.+.+. |..++++|+.+-.+....+...-|...++.+.+.+.. +.++........
T Consensus 54 ------~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~ 125 (558)
T KOG0882|consen 54 ------GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIF 125 (558)
T ss_pred ------HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcE
Confidence 77888887 578888888777 9999999999877665555555555555555544332 222222333333
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEE-e--ecC----CCCCCCCCCcE
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI-V--DMK----PSNMDDLTEVI 256 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~-~--~~~----~~~~~~~~~~v 256 (487)
......+..+... +-.-|..+|.++.+++-+..+++. ..|.|.-|.....-+..+. + ..+ ...+.......
T Consensus 126 VvD~~~d~~q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p 204 (558)
T KOG0882|consen 126 VVDGFGDFCQDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP 204 (558)
T ss_pred EECCcCCcCccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence 3333322222222 225689999999999999999999 8999999988721110000 0 000 01122234567
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcc---------------ccccccc-cceeEEE
Q 011368 257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK---------------SFFTEII-ASISDIK 320 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~---------------~~~~~~~-~~v~~v~ 320 (487)
.++.|+|++ ..+.+-+.|..|++++.+++++..............+... ..+..|. ..-..+.
T Consensus 205 ts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~ 283 (558)
T KOG0882|consen 205 TSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV 283 (558)
T ss_pred cceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence 899999999 9999999999999999999886522111111100000000 0112222 2345678
Q ss_pred EcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCC---------Ccc-eeeEEEEcCCCCEEEEEcC
Q 011368 321 FANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND---------SIF-DKFECSVSGDGLHFATGSY 390 (487)
Q Consensus 321 ~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~s~d~~~l~sg~~ 390 (487)
|...|++|+-|+-=-|++.++.+ +..++.+...+..+.....++... ... .--.+.+-+|...++++-.
T Consensus 284 fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~k 362 (558)
T KOG0882|consen 284 FDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFK 362 (558)
T ss_pred EcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeee
Confidence 88899999988776788888886 666665543332221111111000 000 0012335566667777777
Q ss_pred CCcEEEE
Q 011368 391 SNLLRIF 397 (487)
Q Consensus 391 dg~i~iw 397 (487)
.+.++++
T Consensus 363 k~rfylf 369 (558)
T KOG0882|consen 363 KNRFYLF 369 (558)
T ss_pred cceEEEE
Confidence 7777777
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=2.8e-05 Score=68.73 Aligned_cols=226 Identities=14% Similarity=0.143 Sum_probs=135.9
Q ss_pred EEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368 37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (487)
Q Consensus 37 ~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (487)
+++|.+ ++.++++--..+.|..|+..+++. ..+.. ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------~~~~~--------------~~ 41 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------EVIDL--------------PG 41 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------EEEES--------------SS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------EEEec--------------CC
Confidence 578888 666666666788999999877642 11111 22
Q ss_pred eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
...+++. .+++ .|+.+...+ +.++|..+++...+....
T Consensus 42 ~~G~~~~-~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~--------------------------------------- 79 (246)
T PF08450_consen 42 PNGMAFD-RPDG-RLYVADSGG-IAVVDPDTGKVTVLADLP--------------------------------------- 79 (246)
T ss_dssp EEEEEEE-CTTS-EEEEEETTC-EEEEETTTTEEEEEEEEE---------------------------------------
T ss_pred CceEEEE-ccCC-EEEEEEcCc-eEEEecCCCcEEEEeecc---------------------------------------
Confidence 5677774 2454 555555544 555698888766553210
Q ss_pred eeeeccc-CCCceeEEEeCCCCCEEEEe-cC--------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 196 TKVYPHA-HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 196 ~~~~~~~-~~~~v~~i~~s~~~~~l~s~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
... .....+++++.|+|++.++. .. +.|..++.. +...... ..-.....++|+|++
T Consensus 80 ----~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~--------~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 80 ----DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVA--------DGLGFPNGIAFSPDG 145 (246)
T ss_dssp ----TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEE--------EEESSEEEEEEETTS
T ss_pred ----CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEe--------cCcccccceEECCcc
Confidence 012 45668899999999988875 32 446556555 2322221 123446899999999
Q ss_pred CCEEE-EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 266 CNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 266 ~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
+.|+ +-+..+.|..+++..........+.+.. +..-.+....+++..+|++.++.- .+.|.+++.+
T Consensus 146 -~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~- 213 (246)
T PF08450_consen 146 -KTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD- 213 (246)
T ss_dssp -SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-
T ss_pred -hheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-
Confidence 6665 5567889999998754321111122211 001113478899999998777764 4999999985
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEc-CCCCEEEEE
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATG 388 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~l~sg 388 (487)
++.+..+....... ++++|. ++.+.|...
T Consensus 214 -G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 214 -GKLLREIELPVPRP---------------TNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEEE
T ss_pred -ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEEE
Confidence 77777777652221 689994 665655543
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.80 E-value=1.4e-06 Score=72.78 Aligned_cols=168 Identities=13% Similarity=0.059 Sum_probs=110.7
Q ss_pred eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
+.++++ +++++++++.+....|.+|.++.......
T Consensus 161 ~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~------------------------------------------- 195 (344)
T KOG4532|consen 161 QNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIE------------------------------------------- 195 (344)
T ss_pred eeeeEE--cCCCceEEEecCCCcceEEEeCCccceee-------------------------------------------
Confidence 667777 68899999999999999999976543221
Q ss_pred eeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC-EEEEEe
Q 011368 196 TKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSS 273 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~ 273 (487)
+++.....+.-.+.+|+.....+|++ .||++.|||++..+.+.... ..+.+.|.+.++.+.|++-|+. +|+..-
T Consensus 196 -~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~---sstrp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 196 -NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI---SSTRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred -eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh---cccCCCCCCceEEEEecCCCcceEEEEec
Confidence 11123344555688899999999999 99999999999665544322 1234568999999999987643 344444
Q ss_pred CCCeEEEEEccCCccccccceeecccccccCccccccccccc-eeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368 274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS-ISDIKFANDGQHLLSRDYMNLKLWDIR 342 (487)
Q Consensus 274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~s~~d~~i~iwd~~ 342 (487)
.-+.+.+.|+++..... .+..+.. .+..|... |..-.|+.++.-+.+...-.+.=|++.
T Consensus 272 hfs~~hv~D~R~~~~~q-~I~i~~d---------~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~ 331 (344)
T KOG4532|consen 272 HFSRVHVVDTRNYVNHQ-VIVIPDD---------VERKHNTQHIFGTNFNNENESNDVKNELQGAEYNIL 331 (344)
T ss_pred CcceEEEEEcccCceee-EEecCcc---------ccccccccccccccccCCCcccccccchhhheeecc
Confidence 46789999999976431 1111111 12223333 777777777766655543344455553
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=1.6e-07 Score=82.69 Aligned_cols=158 Identities=10% Similarity=0.104 Sum_probs=98.5
Q ss_pred eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---CCeEEEEE
Q 011368 207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVD 282 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~iwd 282 (487)
...+..++.++++|.+ .+....++++....+..+.++.. .+. ...+++.|..+. .....+.. ...+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~---~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVP---KRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecc---cCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 4455668889999999 77777777776433312221100 111 122333343333 33333333 33444444
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee-ecccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPK 360 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~ 360 (487)
...+. ....-||..-+..++|+||+++|++++ |..|++-.... ...+..+ -+|...+
T Consensus 139 ~~~~~------------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV-- 197 (390)
T KOG3914|consen 139 ADSGR------------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV-- 197 (390)
T ss_pred ccccC------------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe--
Confidence 33221 112345688999999999999999997 69999988764 4444444 3587766
Q ss_pred cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368 361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 405 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~ 405 (487)
..++.-+ +..|++||.|+++++||+.+|+..
T Consensus 198 -------------S~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 198 -------------STISLTD-NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -------------eeeeecc-CceeeecCCCCcEEEEecccCCcc
Confidence 3666664 456899999999999999999653
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.75 E-value=1.3e-05 Score=70.20 Aligned_cols=239 Identities=17% Similarity=0.238 Sum_probs=141.7
Q ss_pred EEEEEEcC-CCCEEEEEecCCc-EEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 35 VSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 35 V~~~~~s~-~~~~l~~g~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
.-.++.+| ....++.+-.-|+ ..+||..+++.. ..+.- ..-..|.||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-------~~~~a------------~~gRHFyGHg----------- 56 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-------QRLWA------------PPGRHFYGHG----------- 56 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-------eEEcC------------CCCCEEecCE-----------
Confidence 44678888 5566777776665 568898888653 01100 1124566775
Q ss_pred ccceeEEEEEecCCCcEEEEE-----eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 113 EEKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.| ++||++|++. ...|.|-|||...+ ..++.+
T Consensus 57 -------~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E--------------------------------- 93 (305)
T PF07433_consen 57 -------VF--SPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGE--------------------------------- 93 (305)
T ss_pred -------EE--cCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeE---------------------------------
Confidence 56 6899999886 35678999999832 222211
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecC--------CeEEEEEccCCCceeEEeecC------CCCC--CC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADD--------LRINLWNLEISDQCFNIVDMK------PSNM--DD 251 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d--------~~i~iwd~~~~~~~~~~~~~~------~~~~--~~ 251 (487)
+..|.-.-..+.+.|||+.|+.+.. |..++ ++.+....+..++.. ...+ ..
T Consensus 94 ------------~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 94 ------------FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred ------------ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccc
Confidence 2455555677889999988887522 23332 333333333222111 1234 34
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCC-------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368 252 LTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 324 (487)
Q Consensus 252 ~~~~v~~v~~~p~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~ 324 (487)
|...|..++++++| ..++..-..| .|-+++.... . ..+.. +........+.+-+|+++++
T Consensus 161 ~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~------p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 161 HQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPA------PEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred cccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccC------ChHHHHhhCCceEEEEEeCC
Confidence 77789999999998 5555443333 1333322221 1 11111 00111223568999999999
Q ss_pred CCEEEEEe-C-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 325 GQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 325 ~~~l~s~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
+.++++.+ - +.+.+||..+ +..+........ ..++-.+++ ++++.+..
T Consensus 228 g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-eEEeCCCc
Confidence 99888765 3 9999999987 777776665553 366766666 66655543
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=4.7e-05 Score=67.28 Aligned_cols=214 Identities=15% Similarity=0.146 Sum_probs=127.6
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (487)
Q Consensus 118 ~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (487)
++.|.+ .++.++++-...+.|..|+..++.....
T Consensus 4 gp~~d~-~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------------------------------- 37 (246)
T PF08450_consen 4 GPVWDP-RDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------------------------------- 37 (246)
T ss_dssp EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEE---------------------------------------------
T ss_pred ceEEEC-CCCEEEEEEcCCCEEEEEECCCCeEEEE---------------------------------------------
Confidence 567742 2667777777889999999988764432
Q ss_pred eecccCCCceeEEEeC-CCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEEEEEeCC
Q 011368 198 VYPHAHDFNINSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 198 ~~~~~~~~~v~~i~~s-~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d 275 (487)
.. .. ...+++. +++ .++.+..+.+.++|..++ ....+.... ... .....+.+++.|+| .+.++....
T Consensus 38 ---~~-~~-~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g-~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~ 106 (246)
T PF08450_consen 38 ---DL-PG-PNGMAFDRPDG-RLYVADSGGIAVVDPDTG-KVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGG 106 (246)
T ss_dssp ---ES-SS-EEEEEEECTTS-EEEEEETTCEEEEETTTT-EEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred ---ec-CC-CceEEEEccCC-EEEEEEcCceEEEecCCC-cEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCC
Confidence 11 11 6677777 565 555553344455588743 333332211 012 34567899999999 777766543
Q ss_pred --------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCC
Q 011368 276 --------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDS 345 (487)
Q Consensus 276 --------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~ 345 (487)
|.|..++.. ++.. ..... -...+.++|+|+++.|+.++ . +.|..+++...+
T Consensus 107 ~~~~~~~~g~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp BCTTCGGSEEEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CccccccccceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccc
Confidence 456666666 3321 22222 24568999999999887664 3 889999986433
Q ss_pred cee---eee-ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368 346 TPV---ATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 421 (487)
Q Consensus 346 ~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 421 (487)
..+ ..+ ...... . ..-.+++..+|++.++.-..+.|.+++.+ | .....+.......+.++|
T Consensus 168 ~~~~~~~~~~~~~~~~-----------g--~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 168 GELSNRRVFIDFPGGP-----------G--YPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp CCEEEEEEEEE-SSSS-----------C--EEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEE
T ss_pred cceeeeeeEEEcCCCC-----------c--CCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEE
Confidence 311 112 111110 0 01379999999988887788999999987 4 445555555446667777
Q ss_pred e
Q 011368 422 Q 422 (487)
Q Consensus 422 ~ 422 (487)
.
T Consensus 233 g 233 (246)
T PF08450_consen 233 G 233 (246)
T ss_dssp E
T ss_pred E
Confidence 4
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=1.8e-07 Score=77.62 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=61.0
Q ss_pred CceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368 205 FNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 282 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 282 (487)
..|.+++-+|..+.++ +| .||.+.+||.+....+. ..+..|..+++.+.|+|..+..|+++++||.+..||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 4489999999655554 46 99999999999543322 346789999999999999889999999999999999
Q ss_pred ccC
Q 011368 283 MRQ 285 (487)
Q Consensus 283 ~~~ 285 (487)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
No 299
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=1.2e-08 Score=98.15 Aligned_cols=215 Identities=15% Similarity=0.236 Sum_probs=145.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|+...+|++|+.+.++|+.|+..|.|+++++.+|... ....+|.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------~s~ncH~--------- 1143 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------ESVNCHQ--------- 1143 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------ccccccc---------
Confidence 5678999999999999999999999999999988753 6678898
Q ss_pred ccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
.+|+-+.= +-+|..+++.+. .--..+|++..-- .
T Consensus 1144 ---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~~-~-------------------------------------- 1179 (1516)
T KOG1832|consen 1144 ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASSTG-G-------------------------------------- 1179 (1516)
T ss_pred ---cccccccc--cCCcceeeeeccccCchHHHhcccccc-C--------------------------------------
Confidence 88888875 678887777543 2357789886511 0
Q ss_pred eeeccceeeeecccCC-CceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 189 EWTENMATKVYPHAHD-FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
..|. ..-.++.|+...+.-+.| ......+||+++...+...+. ...+.+..-.+..|+|+.
T Consensus 1180 ------------~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----~~~~~~y~~n~a~FsP~D- 1242 (1516)
T KOG1832|consen 1180 ------------PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----DTVTSSYSNNLAHFSPCD- 1242 (1516)
T ss_pred ------------ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC----cchhhhhhccccccCCCc-
Confidence 1121 234577887665555555 556788999997766544221 111222233778899997
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCc
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST 346 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~ 346 (487)
.+++ .|| .+||.+..+.+ +.|... ..--.-.|+|+|..++.-+. |||+++ .+
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aI----h~FD~f--------------t~~~~G~FHP~g~eVIINSE----IwD~RT-F~ 1294 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAI----HRFDQF--------------TDYGGGGFHPSGNEVIINSE----IWDMRT-FK 1294 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHH----hhhhhh--------------eecccccccCCCceEEeech----hhhhHH-HH
Confidence 6664 455 48999986544 555541 11123368999998887654 999998 77
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 387 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 387 (487)
.+.....-.. ..+.|+..|..++.
T Consensus 1295 lLh~VP~Ldq-----------------c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1295 LLHSVPSLDQ-----------------CAVTFNSTGDVMYA 1318 (1516)
T ss_pred HHhcCccccc-----------------eEEEeccCccchhh
Confidence 6666554443 36788877776553
No 300
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=2.8e-06 Score=81.23 Aligned_cols=372 Identities=14% Similarity=0.125 Sum_probs=198.1
Q ss_pred ccCcEEEEEEcCCC------------CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec
Q 011368 31 DVDIVSAIEFDKTG------------DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ 98 (487)
Q Consensus 31 h~~~V~~~~~s~~~------------~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (487)
|...|+.+.|.|-. -+||+++..|.|.+||...+.. +..+.
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------------------~~~l~ 106 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------------------INWLS 106 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------------------hhhhc
Confidence 67889999998721 3678888999999999887654 24566
Q ss_pred CCCcccccccccccccceeEEEEEecCCCc--EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc-------
Q 011368 99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGS--MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA------- 169 (487)
Q Consensus 99 ~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 169 (487)
.|. .+|..++|.+..+.. .|++-....++.+|+..+|+........... ..|+.+-+=
T Consensus 107 ~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i-Ls~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 107 HSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI-LSCFRVDPFDSRHFCV 173 (1062)
T ss_pred CCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc-eeeeeeCCCCcceEEE
Confidence 666 889999998755543 5556667789999999888765443322211 111222221
Q ss_pred ---ccccccccCCCC-----cceeeeee----------------------------------------ee----------
Q 011368 170 ---EKNFMNEHNPPS-----FAHGYHLE----------------------------------------WT---------- 191 (487)
Q Consensus 170 ---~~~~~~~~~~~~-----~~~~~~~~----------------------------------------~~---------- 191 (487)
.+.++.....+. ........ |.
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 111111111000 00000000 00
Q ss_pred -------ccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC-CCCCcE----
Q 011368 192 -------ENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVI---- 256 (487)
Q Consensus 192 -------~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v---- 256 (487)
-..++... .-..+.+.-+.+-|+ ...|++. .||.+.+|-.+.......+- ...+. .....+
T Consensus 254 llv~dle~~~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~---~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP---NASLSMDLGEQVHVVR 329 (1062)
T ss_pred eEEEcchhhceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc---chhhccccccceEEEe
Confidence 01111111 111223334455554 4567777 99999999876422222110 00000 001111
Q ss_pred -------EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccce-------eecccccccC--cccc------cccccc
Q 011368 257 -------TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-------ILRDAAESHG--SKSF------FTEIIA 314 (487)
Q Consensus 257 -------~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~h~~~~~--~~~~------~~~~~~ 314 (487)
......|..+..++.--.+|.+.+|.+.+++....... .|.- ...+. .+.. ..+|..
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f-~~~~~~v~k~~l~~LS~dg~h~s 408 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDF-NLSTKLVGKTSLISLSDDGSHSS 408 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccc-cCceeehhhccccchhhcCCCCC
Confidence 12222344334555556678888999987653211000 0000 00000 0000 123555
Q ss_pred ceeEEEEcC-----------CCC-------EEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeE
Q 011368 315 SISDIKFAN-----------DGQ-------HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 375 (487)
Q Consensus 315 ~v~~v~~s~-----------~~~-------~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
...+....| -|+ +++.|.. |+|.++|+.+ +.....+..|...+ .+
T Consensus 409 Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst-~~v~~~fsvht~~V---------------kg 472 (1062)
T KOG1912|consen 409 GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST-NAVAASFSVHTSLV---------------KG 472 (1062)
T ss_pred CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc-hhhhhhhcccccce---------------ee
Confidence 555444332 222 4556765 9999999987 77778888888765 35
Q ss_pred EEEcCCCCEE---------EEEcCCCcEEEEEeCCCCceeEE--EeccCCccccceEeeCCccccccccceeeecccce-
Q 011368 376 CSVSGDGLHF---------ATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA- 443 (487)
Q Consensus 376 ~~~s~d~~~l---------~sg~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~- 443 (487)
+.|-.+.+++ ++|+.-+.+.|-|+.+|...... .+....+|+.+..+. -+++ ++..-++.-
T Consensus 473 leW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~--~~~y-----Lai~Fr~~pl 545 (1062)
T KOG1912|consen 473 LEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS--SGRY-----LAILFRREPL 545 (1062)
T ss_pred eeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc--cCce-----EEEEecccch
Confidence 5555444332 24555567889999998543222 234456777777665 5566 777777777
Q ss_pred ecCCCC-CccccccccCCC-eEEEEEc-CC
Q 011368 444 HENSSS-GHHELSYNLSSK-LLHLAWH-PT 470 (487)
Q Consensus 444 ~~w~~~-~~~~~~~~~~~~-v~~~~~s-pd 470 (487)
.+|... ..........-+ |+.+.|+ |.
T Consensus 546 Eiwd~kt~~~lr~mS~a~P~it~leWsl~~ 575 (1062)
T KOG1912|consen 546 EIWDLKTLRMLRLMSLALPLITVLEWSLPK 575 (1062)
T ss_pred HHHhhccchHHHHHhhcCCcEEEEeecccC
Confidence 899552 222222233335 8899999 44
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=6.1e-08 Score=83.52 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=94.7
Q ss_pred CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC----CceeEEeecCCCCCCCCCCcEEEEEEec-CCCCEEEEEeCCC
Q 011368 203 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRG 276 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg 276 (487)
..+.|.++.|...++++..| .+|.|..+|++.. +.+... --|.+.|+++..-. ++ ++|++.+.+|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--------lyh~Ssvtslq~Lq~s~-q~LmaS~M~g 321 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--------LYHDSSVTSLQILQFSQ-QKLMASDMTG 321 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--------EEcCcchhhhhhhcccc-ceEeeccCcC
Confidence 56778999999888999999 9999999999854 222221 24888899988766 45 8899999999
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeeccc
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHE 355 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 355 (487)
+|.+||++.-+. ...++.+++|.... .-.-+...+....++++ +|...|||.++. +..+.+++...
T Consensus 322 kikLyD~R~~K~-~~~V~qYeGHvN~~-----------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~ 388 (425)
T KOG2695|consen 322 KIKLYDLRATKC-KKSVMQYEGHVNLS-----------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY 388 (425)
T ss_pred ceeEeeehhhhc-ccceeeeecccccc-----------cccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence 999999997653 22346777762211 11122334555566654 569999999997 88888877554
Q ss_pred c
Q 011368 356 H 356 (487)
Q Consensus 356 ~ 356 (487)
.
T Consensus 389 s 389 (425)
T KOG2695|consen 389 S 389 (425)
T ss_pred c
Confidence 3
No 302
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.71 E-value=8.8e-06 Score=77.06 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=85.4
Q ss_pred CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC--Cc---E-EEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368 217 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 289 (487)
Q Consensus 217 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---v-~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 289 (487)
..++.+ .++.+..+|.+++....+.- .. ...+.. .. + .+..+ .+ ..+++++.+|.+..+|.++++..
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~-~~--~~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQR-VA--LPKGRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeec-cc--cCCCCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEE
Confidence 356666 78888888887554433210 00 000000 00 0 11112 23 57888888999999999988633
Q ss_pred cccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCC
Q 011368 290 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 368 (487)
Q Consensus 290 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (487)
+.. . ......... ++..++.+ .+|.+..+|..+ ++.+..........
T Consensus 265 ------W~~-~------------~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~---------- 312 (377)
T TIGR03300 265 ------WKR-D------------ASSYQGPAV--DDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQ---------- 312 (377)
T ss_pred ------Eee-c------------cCCccCceE--eCCEEEEECCCCeEEEEECCC-CcEEEccccccCCc----------
Confidence 322 0 001112222 34455555 469999999986 66654442211100
Q ss_pred CcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 369 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 369 ~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
. .+... .+..|++++.+|.|+++|..+++. ...++.+..
T Consensus 313 -~---ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~-~~~~~~~~~ 351 (377)
T TIGR03300 313 -L---TAPAV--VGGYLVVGDFEGYLHWLSREDGSF-VARLKTDGS 351 (377)
T ss_pred -c---ccCEE--ECCEEEEEeCCCEEEEEECCCCCE-EEEEEcCCC
Confidence 0 12222 456889999999999999998844 556665554
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=8.5e-06 Score=71.74 Aligned_cols=198 Identities=15% Similarity=0.084 Sum_probs=108.8
Q ss_pred CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC
Q 011368 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF 205 (487)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (487)
++..+++++.++.+..||..+|+.........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~------------------------------------------------ 66 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG------------------------------------------------ 66 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc------------------------------------------------
Confidence 46678888899999999999998765532211
Q ss_pred ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368 206 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 284 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 284 (487)
.+...... ++..++.+ .++.++.+|..++....+..... .+... ..........+ ..++++..++.|..+|++
T Consensus 67 ~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 67 PISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp CGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETT
T ss_pred cccceeee-cccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecC
Confidence 11000111 24455555 78899999988666655522111 01111 11222222235 788888889999999999
Q ss_pred CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCe-EEEEeCCCCCceeeeeeccccccccccc
Q 011368 285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCD 363 (487)
Q Consensus 285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
+|+.+ -.... ...+.. ..+. ....+..-....++..+++..++. +.+ |+.+ ++.+.... ....
T Consensus 141 tG~~~----w~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~------ 204 (238)
T PF13360_consen 141 TGKLL----WKYPV-GEPRGS-SPIS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI------ 204 (238)
T ss_dssp TTEEE----EEEES-STT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E------
T ss_pred CCcEE----EEeec-CCCCCC-ccee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc------
Confidence 99754 22222 000000 0000 001122222233453444444564 555 9987 65443222 1111
Q ss_pred ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 364 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
......++..|+.++.++.|..||+++++.
T Consensus 205 -----------~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 205 -----------YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -----------CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -----------cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 122456777888888999999999999944
No 304
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.63 E-value=3e-05 Score=72.42 Aligned_cols=286 Identities=10% Similarity=0.079 Sum_probs=135.5
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+....| +|+|+.++... ++.|.+++..++...++.... ...+. .+ ...|--.
T Consensus 43 ~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~----------------nG------~~dwvye 96 (353)
T PF00930_consen 43 PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIY----------------NG------VPDWVYE 96 (353)
T ss_dssp TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEE----------------ES------B--HHHH
T ss_pred ccccccee--ecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEE----------------cC------ccceecc
Confidence 56888999 57898888875 578999998877555442211 11000 00 0000000
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
..--+.-..+-||||++.|+.. ++..|..+.+..-... ......+..+.+-.-| .-...
T Consensus 97 -------EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~-----------~~~yp~~~~~~YPk~G-~~np~ 157 (353)
T PF00930_consen 97 -------EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP-----------DSQYPEVESIRYPKAG-DPNPR 157 (353)
T ss_dssp -------HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS-----------TESS-EEEEEE--BTT-S---E
T ss_pred -------ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCc-----------cccCCcccccccCCCC-CcCCc
Confidence 0001223578899999999986 6766666554311110 0000123444443333 22211
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE-e-C---CeEEEEeCCCCC
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-D-Y---MNLKLWDIRMDS 345 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~-~-d---~~i~iwd~~~~~ 345 (487)
. .+.++|+.+++.. .+.. .. ....-...+..+.|.++++ +++.- + + -.+.+.|..+ +
T Consensus 158 v----~l~v~~~~~~~~~-----~~~~-~~------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g 220 (353)
T PF00930_consen 158 V----SLFVVDLASGKTT-----ELDP-PN------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-G 220 (353)
T ss_dssp E----EEEEEESSSTCCC-----EE----H------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-T
T ss_pred e----EEEEEECCCCcEE-----Eeee-cc------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-C
Confidence 1 4677888877532 1111 00 0011146789999999998 44432 2 2 4566677765 3
Q ss_pred ceeeeee-cccccccccccccCCCCcceeeEEEEc-CCCC-EEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 346 TPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS-GDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 346 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
....... .....+.. .....|. +++. +|.....||.-+||-+.........+....-.|..+...
T Consensus 221 ~~~~~~~e~~~~Wv~~------------~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~ 288 (353)
T PF00930_consen 221 ETRVVLEETSDGWVDV------------YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGW 288 (353)
T ss_dssp TCEEEEEEESSSSSSS------------SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEE
T ss_pred ceeEEEEecCCcceee------------ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceE
Confidence 3322222 22222210 0245554 5554 444555777666666655444444555445555443333
Q ss_pred eCCccccccccceeeeccc--ce-ecC--CCC-CccccccccCCCe-EEEEEcCCCCEEEEec
Q 011368 423 AAPRARRSSLSNLTRGLYR--QA-HEN--SSS-GHHELSYNLSSKL-LHLAWHPTTNLIACAN 478 (487)
Q Consensus 423 ~~~~~~~~~~~~l~~g~~~--~~-~~w--~~~-~~~~~~~~~~~~v-~~~~~spd~~~la~~s 478 (487)
......+ ..++..+ .. ++| +.. ............. ..++|||++++++..+
T Consensus 289 d~~~~~i-----yf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 289 DEDNNRI-----YFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp ECTSSEE-----EEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred cCCCCEE-----EEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 3223333 3444432 23 666 222 1222222222222 5899999999988544
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=5.4e-08 Score=93.90 Aligned_cols=201 Identities=13% Similarity=0.191 Sum_probs=141.2
Q ss_pred ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (487)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
++..++|+.|. ...+|++| +.+.++|+.|+..|.|+++++.+|.....
T Consensus 1091 Fr~w~~frd~~------------~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s------------------ 1138 (1516)
T KOG1832|consen 1091 FRSWRSFRDET------------ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEES------------------ 1138 (1516)
T ss_pred cccchhhhccc------------cceeeEEe--ecCCceEEeeeccceEEEEEccCcccccc------------------
Confidence 44566677777 88999999 46778999999999999999999976543
Q ss_pred cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC-eEEEEEccCCCceeEEeecCCC
Q 011368 171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL-RINLWNLEISDQCFNIVDMKPS 247 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~-~i~iwd~~~~~~~~~~~~~~~~ 247 (487)
..+|...|+.+.-+.+|..+.+. ... -..+|++........
T Consensus 1139 -----------------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~H------- 1182 (1516)
T KOG1832|consen 1139 -----------------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRH------- 1182 (1516)
T ss_pred -----------------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccCccc-------
Confidence 37999999999999999888775 333 567999885443221
Q ss_pred CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368 248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 327 (487)
Q Consensus 248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 327 (487)
++ ..-.++.|+... +.-+.|.......+||++++..+... +.+ . .+....-+...|+|+..+
T Consensus 1183 sf----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~ty---lt~-~---------~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1183 SF----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTY---LTD-T---------VTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred cc----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHh---cCc-c---------hhhhhhccccccCCCcce
Confidence 11 234678888765 55566666667899999998765321 222 0 001223367889999887
Q ss_pred EEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 328 LLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 328 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
++- .=.+||++. ...+..|...... ..-.|+|.|..++.-+. |||+++-+
T Consensus 1245 Iln----dGvLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1245 ILN----DGVLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred Eee----Cceeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech-----hhhhHHHH
Confidence 763 224899987 4555555433322 15679999999887665 89998863
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.1e-06 Score=81.43 Aligned_cols=193 Identities=16% Similarity=0.184 Sum_probs=129.2
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
.+...+.++|++++ +++|+-|..+|.|++.+.+... .+...|.
T Consensus 35 ~~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s------ 77 (846)
T KOG2066|consen 35 NFLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHS------ 77 (846)
T ss_pred HHHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----------------------------ccccccc------
Confidence 44457789999987 5799999999999999976541 2233343
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.. ..+|.++++|+.||.|.|-.+.+.+....
T Consensus 78 ------~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~----------------------------------- 108 (846)
T KOG2066|consen 78 ------SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQ----------------------------------- 108 (846)
T ss_pred ------cc--------ccCCceEEEecCCCcEEEeeccCCcccee-----------------------------------
Confidence 11 35799999999999999998877664432
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCC-----CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
.....++.+++++|+ .+.+++| ..| +.++.-+--+....+ .+..-.++|.++.|
T Consensus 109 -------------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 109 -------------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEGEGPIHSIKW 168 (846)
T ss_pred -------------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecCccceEEEEe
Confidence 234567889999997 6678887 666 777765433322221 24456688999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeC
Q 011368 262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 341 (487)
Q Consensus 262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~ 341 (487)
. | ++||-++.+| |++||+..++.+ ...+. +. ...+. +..-..+.|.++.+ |+.|=..+|+|..+
T Consensus 169 ~--g-~lIAWand~G-v~vyd~~~~~~l----~~i~~-p~-~~~R~-----e~fpphl~W~~~~~-LVIGW~d~v~i~~I 232 (846)
T KOG2066|consen 169 R--G-NLIAWANDDG-VKVYDTPTRQRL----TNIPP-PS-QSVRP-----ELFPPHLHWQDEDR-LVIGWGDSVKICSI 232 (846)
T ss_pred c--C-cEEEEecCCC-cEEEecccccee----eccCC-CC-CCCCc-----ccCCCceEecCCCe-EEEecCCeEEEEEE
Confidence 7 4 7899998887 899999987644 22222 11 11111 22334678887664 44553347888877
Q ss_pred C
Q 011368 342 R 342 (487)
Q Consensus 342 ~ 342 (487)
+
T Consensus 233 ~ 233 (846)
T KOG2066|consen 233 K 233 (846)
T ss_pred e
Confidence 6
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.53 E-value=2.2e-07 Score=55.29 Aligned_cols=32 Identities=19% Similarity=0.511 Sum_probs=30.2
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~ 60 (487)
..|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35899999999999999999999999999997
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.6e-06 Score=74.80 Aligned_cols=218 Identities=20% Similarity=0.188 Sum_probs=138.1
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+.+.|+.+.- .-.+++.+++.||.++.|.-..-....+.
T Consensus 8 hrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfV-------------------------------------- 46 (558)
T KOG0882|consen 8 HRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFV-------------------------------------- 46 (558)
T ss_pred ccceeeeEee---ehhheEEeeecchhhhhcCCCCccceeeh--------------------------------------
Confidence 3366777765 34578999999999999976542222221
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC-CE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NL 268 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~ 268 (487)
+ .+..|...|.+++.+-++.++.+. . |..++++|++.-. ....+ ++.-..+.+.++ .+|... ..
T Consensus 47 -----K-hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D-minmi-----KL~~lPg~a~wv-~skGd~~s~ 113 (558)
T KOG0882|consen 47 -----K-HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD-MINMI-----KLVDLPGFAEWV-TSKGDKISL 113 (558)
T ss_pred -----h-hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc-hhhhc-----ccccCCCceEEe-cCCCCeeee
Confidence 1 136788899999999999999996 5 9999999998433 22221 122222332222 223211 13
Q ss_pred EEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCC--
Q 011368 269 LAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-- 344 (487)
Q Consensus 269 l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~-- 344 (487)
++++. .++.+.++|-....... ..+.+ -|..+|..+.+++.+..+++.+. |.|.-|....+
T Consensus 114 IAVs~~~sg~i~VvD~~~d~~q~---~~fkk------------lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 114 IAVSLFKSGKIFVVDGFGDFCQD---GYFKK------------LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred EEeecccCCCcEEECCcCCcCcc---ceecc------------cccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 44443 47899999987654221 22222 35789999999999999988864 99999987621
Q ss_pred ---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 345 ---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 345 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
.+....++.... +..+...-. ...++.|+|+|..+.+-+.|..|+++++++|+.
T Consensus 179 fPr~~l~~~~K~eTd----Ly~f~K~Kt--~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 179 FPRTNLNFELKHETD----LYGFPKAKT--EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred Cccccccccccccch----hhccccccc--CccceEEccccCcccccCcccEEEEEEeccchh
Confidence 111111211110 000000011 125899999999999999999999999999844
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=7.7e-07 Score=76.95 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=109.5
Q ss_pred CCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee
Q 011368 216 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 295 (487)
Q Consensus 216 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 295 (487)
+-.+++|.+..|-+-|++++-+. .+. ..+.|.++.|...+ +++..|..+|.|..+|++.+..- ..
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~ 289 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG 289 (425)
T ss_pred eeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence 44444557778888888854331 233 45678899999888 89999999999999999975211 11
Q ss_pred ecccccccCccccccccccceeEEEEcC-CCCEEEEE-eCCeEEEEeCCCCCce---eeeeecccccccccccccCCCCc
Q 011368 296 LRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR-DYMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSI 370 (487)
Q Consensus 296 ~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 370 (487)
+..| .--|...|+++..-. ++++|++. .+|.|++||++. .++ +..+.+|.+....
T Consensus 290 ~~a~---------rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~---------- 349 (425)
T KOG2695|consen 290 WCAQ---------RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY---------- 349 (425)
T ss_pred cceE---------EEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc----------
Confidence 1110 112467888887665 56666665 469999999986 555 7888888764321
Q ss_pred ceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368 371 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 410 (487)
Q Consensus 371 ~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 410 (487)
.-+...+....++++++|-..+||.+..+.. +.+++
T Consensus 350 ---l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL-l~tip 385 (425)
T KOG2695|consen 350 ---LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL-LCTIP 385 (425)
T ss_pred ---cccccccccceEEEccCeeEEEEEecccCce-eeccC
Confidence 2466777788899999999999999998843 44443
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=6.9e-07 Score=53.12 Aligned_cols=38 Identities=29% Similarity=0.790 Sum_probs=34.2
Q ss_pred eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 011368 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (487)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd 143 (487)
+++.++++|. +.|.+|+|+ |++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~------------~~i~~i~~~--~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS------------SSINSIAWS--PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS------------SSEEEEEEE--TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC------------CcEEEEEEe--cccccceeeCCCCEEEEEC
Confidence 3578899999 999999995 6789999999999999997
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=8e-05 Score=72.61 Aligned_cols=214 Identities=14% Similarity=0.228 Sum_probs=131.8
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.|+| |++.+..+|.|+.+|.|.+.+- ..+....++++.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~----------------------------s~~~~~~fqa~~------------ 64 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS----------------------------SFQLIRGFQAYE------------ 64 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc----------------------------cceeeehheecc------------
Confidence 4544 5688889999999999988873 223346677776
Q ss_pred cc-eeEEEEEecCCC-cEEEEEeCCC-----cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 114 EK-INRVRWCAAPNG-SMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 114 ~~-I~~v~~~~~~~~-~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
.. |..+.. .++ .+|++.+.|+ .+++|+++.-+.... |
T Consensus 65 ~siv~~L~~---~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s------P--------------------------- 108 (933)
T KOG2114|consen 65 QSIVQFLYI---LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS------P--------------------------- 108 (933)
T ss_pred hhhhhHhhc---ccCceEEEEEeecCCCCceEEEEecccccCCCCC------c---------------------------
Confidence 44 333332 333 5677766554 489999875421100 0
Q ss_pred eeeeecccee---eee---cccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC-CceeEEeecCCCCCCCCCCcEEE
Q 011368 187 HLEWTENMAT---KVY---PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITS 258 (487)
Q Consensus 187 ~~~~~~~~~~---~~~---~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 258 (487)
.+. +.+ ......++.+++.+.+-+.+|+| .+|.|..+.=+-. .+..+. .-...-..+|+.
T Consensus 109 -------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITg 176 (933)
T KOG2114|consen 109 -------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITG 176 (933)
T ss_pred -------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCcee
Confidence 011 111 12346778899999999999999 9999998842210 111111 011234568999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEE
Q 011368 259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 338 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~i 338 (487)
+++..++ +..+.......|.+|.+...... .+.... |...+.|..+++....++++....+.+
T Consensus 177 L~~~~d~-~s~lFv~Tt~~V~~y~l~gr~p~---~~~ld~-------------~G~~lnCss~~~~t~qfIca~~e~l~f 239 (933)
T KOG2114|consen 177 LALRSDG-KSVLFVATTEQVMLYSLSGRTPS---LKVLDN-------------NGISLNCSSFSDGTYQFICAGSEFLYF 239 (933)
T ss_pred eEEecCC-ceeEEEEecceeEEEEecCCCcc---eeeecc-------------CCccceeeecCCCCccEEEecCceEEE
Confidence 9999888 55344444557899998854311 122333 356788999987666566666689999
Q ss_pred EeCCCCCceeeeee-ccc
Q 011368 339 WDIRMDSTPVATFK-IHE 355 (487)
Q Consensus 339 wd~~~~~~~~~~~~-~~~ 355 (487)
|+... ..+-..+. ++.
T Consensus 240 Y~sd~-~~~cfaf~~g~k 256 (933)
T KOG2114|consen 240 YDSDG-RGPCFAFEVGEK 256 (933)
T ss_pred EcCCC-cceeeeecCCCe
Confidence 99874 44444454 444
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=7.7e-06 Score=78.81 Aligned_cols=163 Identities=11% Similarity=0.002 Sum_probs=108.4
Q ss_pred CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368 204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 282 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 282 (487)
...+.|++++ +++|+-| .+|.|++.+... .. .. ...|... ..+| .++++|+.||+|.|-.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~--------~~~~s~~------~~~G-ey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KT--------NFDHSSS------ILEG-EYVASCSDDGKVVIGS 99 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-cc--------ccccccc------ccCC-ceEEEecCCCcEEEee
Confidence 3556777776 7899999 999999999873 21 11 1233333 5678 9999999999999998
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCC-----CCEEEEEeC-CeEEEEeCCCCCceeee-eeccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHE 355 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-----~~~l~s~~d-~~i~iwd~~~~~~~~~~-~~~~~ 355 (487)
+-+.+.. ..+.- ..++.+++++|+ .+.+++|+. | +.++.-+.-+..... +....
T Consensus 100 l~~~~~~----~~~df--------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 100 LFTDDEI----TQYDF--------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred ccCCccc----eeEec--------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 8887654 44443 358999999998 456777776 6 888765432222222 33333
Q ss_pred ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
+++ .++.| .|.+||-++++| |+|||+.+++. +..++.....++.-.|.|
T Consensus 161 G~I---------------~~i~W--~g~lIAWand~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpp 209 (846)
T KOG2066|consen 161 GPI---------------HSIKW--RGNLIAWANDDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPP 209 (846)
T ss_pred cce---------------EEEEe--cCcEEEEecCCC-cEEEeccccce-eeccCCCCCCCCcccCCC
Confidence 332 58888 478999888886 89999988743 333333334444444433
No 313
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.45 E-value=7.8e-08 Score=89.67 Aligned_cols=208 Identities=15% Similarity=0.169 Sum_probs=137.3
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+.|+++....+...++.|..+|.|-+-.+....-.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------------------------------------------- 93 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------------------------------------------- 93 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------------------------
Confidence 5577888765445467788889999988877543211
Q ss_pred ceeeeecccCCCceeEEEeCC-CCCEEEEe-c----CCeEEEEEccCCCc-eeEEeecCCCCCCC-CCCcEEEEEEecCC
Q 011368 194 MATKVYPHAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISDQ-CFNIVDMKPSNMDD-LTEVITSAEFHPIY 265 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~-~~~~v~~v~~~p~~ 265 (487)
-..+..++...+++++|++ |.+.||+| . |..+.|||+.+.-. +.+. ..+.+ ......+++|..+.
T Consensus 94 --s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----~~fs~~~l~gqns~cwlrd~ 166 (783)
T KOG1008|consen 94 --SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----PLFSSSTLDGQNSVCWLRDT 166 (783)
T ss_pred --cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-----cccccccccCccccccccCc
Confidence 0112478889999999988 67888887 3 67899999985311 1111 11222 33445688888887
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEeCCeEEEEe-CCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWD-IRM 343 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~d~~i~iwd-~~~ 343 (487)
+++++|...+.+.++|++...... ..+. +..+..+...| .+.|+++-.|+.|.+|| .+.
T Consensus 167 -klvlaGm~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rn 227 (783)
T KOG1008|consen 167 -KLVLAGMTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRN 227 (783)
T ss_pred -chhhcccccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceeccccCceeeccchhh
Confidence 889999999999999999643211 1111 24677888888 78899888899999999 443
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCC-CcEEEEEeCC
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYS-NLLRIFSHGV 401 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~d-g~i~iwd~~~ 401 (487)
-..++..+.......++ .+..++|.|... .+++...| ++|+++++..
T Consensus 228 ienpl~~i~~~~N~~~~-----------~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 228 IENPLQIILRNENKKPK-----------QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hccHHHHHhhCCCCccc-----------ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 34445444433332211 125899999432 45555544 7899999864
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.8e-05 Score=76.78 Aligned_cols=108 Identities=15% Similarity=0.312 Sum_probs=80.7
Q ss_pred EEEEEcCCCCEEEEEe----cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 36 SAIEFDKTGDYLAVGD----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 36 ~~~~~s~~~~~l~~g~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
+-..|+|...++|.++ ..|+|.||- ++|+.. ...+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq-------------------------r~Vt~P------------- 59 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ-------------------------RDVTYP------------- 59 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCC-------------------------cccccc-------------
Confidence 3457999999998886 568899885 444421 001112
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
-.+++++|+ |..-.|+.|-.-|.+.+|...+.+....
T Consensus 60 --~hatSLCWH--pe~~vLa~gwe~g~~~v~~~~~~e~htv--------------------------------------- 96 (1416)
T KOG3617|consen 60 --VHATSLCWH--PEEFVLAQGWEMGVSDVQKTNTTETHTV--------------------------------------- 96 (1416)
T ss_pred --eehhhhccC--hHHHHHhhccccceeEEEecCCceeeee---------------------------------------
Confidence 224679996 4555677777889999999877664433
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEcc
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 233 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~ 233 (487)
...|..+|..+.||++|..++++ .-|.+.+|...
T Consensus 97 --------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 --------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 36899999999999999999999 99999999877
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.43 E-value=8.9e-05 Score=65.14 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=74.0
Q ss_pred ccCCCceeEEEeCCCCCEEEEe-cCCe-------EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 201 HAHDFNINSISNNSDCETFVSA-DDLR-------INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.-|.-.|+.+++.++|..++.. ..+. |-+++.. ..+..+..+......-...+-+|++++++ ..+++.
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~t 234 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVT 234 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEE
Confidence 3467789999999999888876 4433 3333332 22333333322334455778999999998 766555
Q ss_pred e-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368 273 S-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 340 (487)
Q Consensus 273 ~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd 340 (487)
+ ..+.+.+||..+++++ ..... ..+..++-.+++ ++++...|.+....
T Consensus 235 sPrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 5 5789999999998754 22222 346667777766 66665556644433
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.41 E-value=0.00023 Score=72.21 Aligned_cols=236 Identities=16% Similarity=0.136 Sum_probs=133.9
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
+.|.++.|..+.+-++.+..+|.|.+-|..+... ..-|.-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------eivg~v----------- 108 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------EIVGNV----------- 108 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------eeeeec-----------
Confidence 5799999999999999999999999988776642 222222
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee--
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-- 190 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 190 (487)
+..|.+++| +||++.++..+.++++.+-.-.- ..+....... -..+.+.++..+............-
T Consensus 109 d~GI~aasw--S~Dee~l~liT~~~tll~mT~~f-~~i~E~~L~~--------d~~~~sk~v~VGwGrkeTqfrgs~gr~ 177 (1265)
T KOG1920|consen 109 DNGISAASW--SPDEELLALITGRQTLLFMTKDF-EPIAEKPLDA--------DDERKSKFVNVGWGRKETQFRGSEGRQ 177 (1265)
T ss_pred cCceEEEee--cCCCcEEEEEeCCcEEEEEeccc-cchhcccccc--------ccccccccceecccccceeeecchhhh
Confidence 278999999 68999999999888887754311 1111100000 0001111111111111110000000
Q ss_pred ec-cceeeeecc---cCCCceeEEEeCCCCCEEEEe-----cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 191 TE-NMATKVYPH---AHDFNINSISNNSDCETFVSA-----DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 191 ~~-~~~~~~~~~---~~~~~v~~i~~s~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
-. ......... ...+.=+.|.|--||+++|+. .+ +.|++||.+ +.. -. .-+...+.-.+++
T Consensus 178 ~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns-------~se~~~~l~~~Ls 248 (1265)
T KOG1920|consen 178 AARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NS-------TSEPVEGLQHSLS 248 (1265)
T ss_pred cccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hc-------ccCccccccccee
Confidence 00 000000000 122333578999999999882 34 899999988 321 11 0112223346799
Q ss_pred EecCCCCEEEEEe---CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE---eC-
Q 011368 261 FHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY- 333 (487)
Q Consensus 261 ~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~---~d- 333 (487)
|-|.| ..+++-. .|+.|.+|.-+.-+ - ..|.. .++.....|..++|+.++..|+.- ..
T Consensus 249 WkPsg-s~iA~iq~~~sd~~IvffErNGL~-h----g~f~l---------~~p~de~~ve~L~Wns~sdiLAv~~~~~e~ 313 (1265)
T KOG1920|consen 249 WKPSG-SLIAAIQCKTSDSDIVFFERNGLR-H----GEFVL---------PFPLDEKEVEELAWNSNSDILAVVTSNLEN 313 (1265)
T ss_pred ecCCC-CeEeeeeecCCCCcEEEEecCCcc-c----ccccc---------CCcccccchheeeecCCCCceeeeeccccc
Confidence 99999 8888764 35678888754321 1 11111 011123459999999999999873 23
Q ss_pred CeEEEEeCCC
Q 011368 334 MNLKLWDIRM 343 (487)
Q Consensus 334 ~~i~iwd~~~ 343 (487)
..|++|-+..
T Consensus 314 ~~v~lwt~~N 323 (1265)
T KOG1920|consen 314 SLVQLWTTGN 323 (1265)
T ss_pred ceEEEEEecC
Confidence 4599998764
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=0.00032 Score=71.29 Aligned_cols=226 Identities=12% Similarity=0.092 Sum_probs=137.8
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.++.|. .+...++.+..+|.|.+-|..+......
T Consensus 69 ~~i~s~~fl--~d~~~i~v~~~~G~iilvd~et~~~eiv----------------------------------------- 105 (1265)
T KOG1920|consen 69 DEIVSVQFL--ADTNSICVITALGDIILVDPETLELEIV----------------------------------------- 105 (1265)
T ss_pred cceEEEEEe--cccceEEEEecCCcEEEEcccccceeee-----------------------------------------
Confidence 579999995 5677788888899999988877765433
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEcc----CCCce----------eEEe-ecCCCCCC-------
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE----ISDQC----------FNIV-DMKPSNMD------- 250 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~----~~~~~----------~~~~-~~~~~~~~------- 250 (487)
..-...|.+++|+||++.++.. .++++.+-.-. ..... +++= .-+...+.
T Consensus 106 -------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~ 178 (1265)
T KOG1920|consen 106 -------GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQA 178 (1265)
T ss_pred -------eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhc
Confidence 3456789999999999999888 76777654331 01110 0000 00000000
Q ss_pred -----------C---CCCcEEEEEEecCCCCEEEEEe-----CCCeEEEEEccCCccccccceeecccccccCccccccc
Q 011368 251 -----------D---LTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 311 (487)
Q Consensus 251 -----------~---~~~~v~~v~~~p~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 311 (487)
+ ..+.-+++.|--+| .++|+.. ..+.|++||.+ +.+- .... +
T Consensus 179 ~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Ln-----s~se-------~----- 239 (1265)
T KOG1920|consen 179 ARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALN-----STSE-------P----- 239 (1265)
T ss_pred ccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhh-----cccC-------c-----
Confidence 0 11123468999999 9998843 23799999987 4321 1000 0
Q ss_pred cccceeEEEEcCCCCEEEEE----eCCeEEEEeCCCCCceeeee--ecccccccccccccCCCCcceeeEEEEcCCCCEE
Q 011368 312 IIASISDIKFANDGQHLLSR----DYMNLKLWDIRMDSTPVATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 385 (487)
Q Consensus 312 ~~~~v~~v~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 385 (487)
-.+.=.+++|-|.|..+++- +++.|.+|.-+ +-....+ +...... . +..++|+.++..|
T Consensus 240 ~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f~l~~p~de~---------~----ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 240 VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEFVLPFPLDEK---------E----VEELAWNSNSDIL 304 (1265)
T ss_pred ccccccceeecCCCCeEeeeeecCCCCcEEEEecC--CccccccccCCccccc---------c----hheeeecCCCCce
Confidence 02334678999999999973 34789999864 2222222 1111111 0 2489999999999
Q ss_pred EE---EcCCCcEEEEEeCCCCce-eEEEeccCCccccceEeeCC
Q 011368 386 AT---GSYSNLLRIFSHGVGSAG-GITVEAGKNENRKPILQAAP 425 (487)
Q Consensus 386 ~s---g~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 425 (487)
|+ ......|++|-+.+-... ++.+....... +.|.|..
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~ 346 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVT 346 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCC
Confidence 87 555556999999876432 34444443332 5555543
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.40 E-value=0.00016 Score=67.94 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=62.4
Q ss_pred ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368 201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 279 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 279 (487)
......|.+++++|+...++.| .||+|.+||...+-... ....-.++.++|+|+| .++++|+..|.+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ 324 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------AKAEFIPTLIAWHPDG-AIFVVGSEQGELQ 324 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------eeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence 4667889999999999999999 99999999998442211 1223446889999999 9999999999999
Q ss_pred EEEccCCc
Q 011368 280 LVDMRQSA 287 (487)
Q Consensus 280 iwd~~~~~ 287 (487)
+||+.-..
T Consensus 325 ~FD~ALsp 332 (545)
T PF11768_consen 325 CFDMALSP 332 (545)
T ss_pred EEEeecCc
Confidence 99998754
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.37 E-value=0.00052 Score=65.32 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=78.5
Q ss_pred CEEEEe-cCCeEEEEEccCCCceeEEeecCC-CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccce
Q 011368 217 ETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 294 (487)
Q Consensus 217 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 294 (487)
..++.+ .++.+.-+|.++++...+.-...+ ....+...+ ... + ..++.++.+|.+..+|..+++.. -
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP----~v~-~--~~v~~~~~~g~v~a~d~~~G~~~----W 229 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP----ATA-F--GGAIVGGDNGRVSAVLMEQGQLI----W 229 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC----EEE-C--CEEEEEcCCCEEEEEEccCChhh----h
Confidence 345555 888999999986665554310000 000011111 111 2 35677788899999999988743 1
Q ss_pred eecccccccCccccccccccceeEEEEcC---CCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcc
Q 011368 295 ILRDAAESHGSKSFFTEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 371 (487)
Q Consensus 295 ~~~~h~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (487)
.... ..+.....+ .....+..+| ++..++++.++.+..+|..+ ++.+........
T Consensus 230 ~~~~--~~~~~~~~~----~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~--------------- 287 (394)
T PRK11138 230 QQRI--SQPTGATEI----DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV--------------- 287 (394)
T ss_pred eecc--ccCCCccch----hcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc---------------
Confidence 1111 000000000 0011111122 34344444569999999987 665544332110
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 372 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 372 ~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
..+.. ++..|+.++.+|.+..+|..+++.
T Consensus 288 --~~~~~--~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 288 --NDFAV--DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred --cCcEE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 12222 456777888899999999998854
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.34 E-value=0.00031 Score=67.22 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=85.6
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|...|.--+++..+++++.|+..|.+.+|+-.+++.. .....+-.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------------~~~~~~~~--------- 76 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------------------------KLKNEGAT--------- 76 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh--------------------------cccccCcc---------
Confidence 4556666677788999999999999999998777542 11111111
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+.+..+.. +++..++|.|+..|.|.++-+..+........
T Consensus 77 ---~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~----------------------------------- 116 (726)
T KOG3621|consen 77 ---GITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDLDYV----------------------------------- 116 (726)
T ss_pred ---ceEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCcceee-----------------------------------
Confidence 33444444 56777888889999999998876432211000
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 234 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~ 234 (487)
...-..|...|++++|++|+..+++| ..|.|..-.++.
T Consensus 117 ------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 ------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ------ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 00013578999999999999999999 999998887774
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=6.9e-05 Score=71.49 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=88.5
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
.|.--++ +..+++++.|+.-|.+.+|+-.++++....
T Consensus 35 ~v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~----------------------------------------- 71 (726)
T KOG3621|consen 35 RVKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLK----------------------------------------- 71 (726)
T ss_pred eEEEEEe--ecCCceEEEecccceEEEEecCchhhhccc-----------------------------------------
Confidence 3443444 457889999999999999999888765442
Q ss_pred eeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 195 ATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
..+..+.+..+..+++..++|.| ..|.|.++.++.....-..+ .. .--..|...|++++|++++ ..+++|.
T Consensus 72 -----~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~-~t-~~d~~~~~rVTal~Ws~~~-~k~ysGD 143 (726)
T KOG3621|consen 72 -----NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY-VT-PCDKSHKCRVTALEWSKNG-MKLYSGD 143 (726)
T ss_pred -----ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee-ec-cccccCCceEEEEEecccc-cEEeecC
Confidence 12344556677788888888888 99999999888533322221 11 1112378899999999999 9999999
Q ss_pred CCCeEEEEEccC
Q 011368 274 SRGFVRLVDMRQ 285 (487)
Q Consensus 274 ~dg~i~iwd~~~ 285 (487)
..|.|.+-.+..
T Consensus 144 ~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 144 SQGKVVLTELDS 155 (726)
T ss_pred CCceEEEEEech
Confidence 999999888776
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=9e-05 Score=65.87 Aligned_cols=249 Identities=9% Similarity=0.019 Sum_probs=133.5
Q ss_pred ccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..|...|..++|||..+ ++..++.+..|+|.|+++... +.++..|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~---------------------------vssy~a~------- 235 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV---------------------------VSSYIAY------- 235 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccccee---------------------------eeheecc-------
Confidence 34677899999999887 788899999999999987654 3455555
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccccee-Ee-eecCCCCceeeeeccccccccccccCCCCccee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..+++++|.- .+..++..|-..|.|.+||++..+-. .. .......++..+++.+++ ..+.+++--.....
T Consensus 236 ------~~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n-~~f~~gglLv~~lt 307 (463)
T KOG1645|consen 236 ------NQIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPN-KIFTSGGLLVFALT 307 (463)
T ss_pred ------CCceeeeecc-CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcc-ccccccceEEeeeh
Confidence 5689999973 44667778889999999999753321 11 111223345555555555 22222221111122
Q ss_pred eeeeeeccce----eeeecccCCCceeEEEeCCCCCEEEEe--cCC------eEEEE-EccCCCceeEEeecCCCCC-CC
Q 011368 186 YHLEWTENMA----TKVYPHAHDFNINSISNNSDCETFVSA--DDL------RINLW-NLEISDQCFNIVDMKPSNM-DD 251 (487)
Q Consensus 186 ~~~~~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~------~i~iw-d~~~~~~~~~~~~~~~~~~-~~ 251 (487)
....|+.... ..+.-.+..+.+.+++..+-.+.++.. .+. .|-.+ |-. .+..+-. .+ ... ..
T Consensus 308 ~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~-dG~pVc~--~r-~~~~Gs 383 (463)
T KOG1645|consen 308 VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFR-DGFPVCG--KR-RTYFGS 383 (463)
T ss_pred hhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccc-cCceeee--ec-ccccCC
Confidence 2222332111 111112335566667776644554443 321 11110 001 0111100 00 000 00
Q ss_pred CCCcE--EEEEE-ecCCCCEEE-EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC--CC
Q 011368 252 LTEVI--TSAEF-HPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DG 325 (487)
Q Consensus 252 ~~~~v--~~v~~-~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~--~~ 325 (487)
..-.+ +...+ .++. ++++ ++.+.+.+.+||..+.+.. +.+.. ..+|.+++... .+
T Consensus 384 ~~~kl~t~~ai~~~~~n-n~iv~~gd~tn~lil~D~~s~evv----Q~l~~--------------~epv~Dicp~~~n~~ 444 (463)
T KOG1645|consen 384 KQTKLSTTQAIRAVEDN-NYIVVVGDSTNELILQDPHSFEVV----QTLAL--------------SEPVLDICPNDTNGS 444 (463)
T ss_pred cccccccccceeccccc-cEEEEecCCcceeEEeccchhhee----eeccc--------------CcceeecceeecCCc
Confidence 00000 01112 2344 4444 4455689999999998765 55554 35677776542 34
Q ss_pred CEEEEEeCCeEEEEeCC
Q 011368 326 QHLLSRDYMNLKLWDIR 342 (487)
Q Consensus 326 ~~l~s~~d~~i~iwd~~ 342 (487)
.||++-.|..++||..+
T Consensus 445 syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 445 SYLALLTDDRVHIYKNE 461 (463)
T ss_pred chhhheecceEEEEecC
Confidence 57877778888888764
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.20 E-value=4.2e-05 Score=74.93 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=107.3
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
.|.-++. +++++.+|...|+|.+-|..+.+.+..
T Consensus 179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht------------------------------------------ 212 (1118)
T KOG1275|consen 179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHT------------------------------------------ 212 (1118)
T ss_pred ceEEEEe----cCcEEEeecccceEEeecCCcCceeee------------------------------------------
Confidence 4666664 578899999999999999988776554
Q ss_pred eeeeecccCCCceeEEEeCCCCCEEEEe-c---------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 195 ATKVYPHAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
+..|.+.|.++... |+.|++| . |..|++||++....... +.-+.+ ..-+.|+|.
T Consensus 213 -----~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--------I~~~~~-P~flrf~Ps 276 (1118)
T KOG1275|consen 213 -----FDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--------IQFPYG-PQFLRFHPS 276 (1118)
T ss_pred -----eeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCC--------cccccC-chhhhhccc
Confidence 37899999887765 7888885 3 55689999995443221 122222 255778898
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 341 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~ 341 (487)
-+..+++++..|...+-|..+-..... ..+..|+ ....+..+.+|++|+.|+.|+ +|.|.+|.-
T Consensus 277 l~t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p-----------~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 277 LTTRLAVTSQSGQFQFVDTATLSNPPA--GVKMVNP-----------NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccceEEEEecccceeeccccccCCCcc--ceeEEcc-----------CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 778999999999999998433211100 1111110 134599999999999999996 499999984
No 324
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=0.00089 Score=58.07 Aligned_cols=219 Identities=14% Similarity=0.221 Sum_probs=108.0
Q ss_pred CcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 33 ~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
+.++.|+|+|+.+ ++++....+.|...+.+ ++.+ -...+.+.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl-------------------------r~i~l~g~----------- 64 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL-------------------------RRIPLDGF----------- 64 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE-------------------------EEEE-SS------------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE-------------------------EEEeCCCC-----------
Confidence 3599999999865 55556677777666643 3221 01123332
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+....|++. .++.++++.-.++.+.++++.... .......
T Consensus 65 --~D~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~----------------------------------- 105 (248)
T PF06977_consen 65 --GDYEGITYL--GNGRYVLSEERDQRLYIFTIDDDTTSLDRADV----------------------------------- 105 (248)
T ss_dssp --SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EEEE-----------------------------------
T ss_pred --CCceeEEEE--CCCEEEEEEcCCCcEEEEEEeccccccchhhc-----------------------------------
Confidence 446788883 556666665578999999884422 1111000
Q ss_pred eccceeee-ecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccC--CCceeEEeecCC-CCCCCCCCcEEEEEEecCC
Q 011368 191 TENMATKV-YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-SNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 191 ~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~ 265 (487)
+.... +...+...+-.++|+|.++.|+.+ ...-..+|.+.. ............ .........+.+++++|..
T Consensus 106 ---~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 106 ---QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp ---EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred ---eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence 00000 012456678999999988888887 766677777663 122222211100 0011223457889999987
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEE
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 339 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iw 339 (487)
..+++.+..+..|..+| .+|+.. ..+....... -+...-.+...|+|.++|++.+++.-+..++|
T Consensus 183 ~~lliLS~es~~l~~~d-~~G~~~----~~~~L~~g~~----gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 183 GHLLILSDESRLLLELD-RQGRVV----SSLSLDRGFH----GLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TEEEEEETTTTEEEEE--TT--EE----EEEE-STTGG----G-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CeEEEEECCCCeEEEEC-CCCCEE----EEEEeCCccc----CcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 56777777788999999 445432 2222100000 00001235788999999988777764655554
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00052 Score=67.20 Aligned_cols=211 Identities=14% Similarity=0.145 Sum_probs=122.2
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
++++..++.|+.+|.|.+.+-.-..... +..+
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s~~~~~~------------------------------------------------fqa~ 63 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSSFQLIRG------------------------------------------------FQAY 63 (933)
T ss_pred cCCCceEEEeeccccEEEecccceeeeh------------------------------------------------heec
Confidence 4678899999999998887643221111 2344
Q ss_pred CCc-eeEEEeCCCCCEEEE-e-cCC----eEEEEEccCC-----CceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 204 DFN-INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 204 ~~~-v~~i~~s~~~~~l~s-~-~d~----~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
... |..+-...+..+|++ | +++ .+++|+++.. .+++....+-+...+....++.+++.+.+- +.+|+
T Consensus 64 ~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~ 142 (933)
T KOG2114|consen 64 EQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVC 142 (933)
T ss_pred chhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEE
Confidence 444 333333333356666 4 444 6899998743 223311122222223345678899999987 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEEeCCeEEEEeCCCCCcee-e
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTPV-A 349 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~d~~i~iwd~~~~~~~~-~ 349 (487)
|-.+|.|..+.-.--+ .+..+.--.| .-..+|+.+++..+++. ++++.-..|.+|.+.. ..+. .
T Consensus 143 Gf~nG~V~~~~GDi~R--Drgsr~~~~~-----------~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~ 208 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILR--DRGSRQDYSH-----------RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLK 208 (933)
T ss_pred EecCcEEEEEcCcchh--ccccceeeec-----------cCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCccee
Confidence 9999999888422111 1111211111 01578999999988886 4455557899999974 3333 3
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe-ccCC
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKN 414 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~ 414 (487)
.+..+.... .+..+++....+++++. ..+.+|+....+ ....+. +|+.
T Consensus 209 ~ld~~G~~l---------------nCss~~~~t~qfIca~~-e~l~fY~sd~~~-~cfaf~~g~kk 257 (933)
T KOG2114|consen 209 VLDNNGISL---------------NCSSFSDGTYQFICAGS-EFLYFYDSDGRG-PCFAFEVGEKK 257 (933)
T ss_pred eeccCCccc---------------eeeecCCCCccEEEecC-ceEEEEcCCCcc-eeeeecCCCeE
Confidence 344443321 46677765443555544 369999987543 344444 5543
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00055 Score=64.72 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=105.8
Q ss_pred cceeEEEEEecCCCcEEEEEe---CC-CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILST---ND-KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..+..-+| ++++..++... .. ..+.++++.+++...+.
T Consensus 193 ~~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------------------------------------ 234 (425)
T COG0823 193 SLILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------------------------------------ 234 (425)
T ss_pred cceecccc--CcCCCceEEEEEecCCCceEEEEeccCCccceee------------------------------------
Confidence 44666677 46666655542 22 46888899887655441
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCe--EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
...+.-..-+|+|||+.|+.+ .|+. |++.|+.. +...+ +....+.-..-.|+|+|
T Consensus 235 ------------~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~-~~~~~--------Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 235 ------------NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG-KNLPR--------LTNGFGINTSPSWSPDG 293 (425)
T ss_pred ------------ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC-Cccee--------cccCCccccCccCCCCC
Confidence 123333456799999998886 6665 55556663 22222 22222222366799999
Q ss_pred CCEEEEEeC-CCe--EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCe--EEE
Q 011368 266 CNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMN--LKL 338 (487)
Q Consensus 266 ~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~--i~i 338 (487)
+.|+..+. .|. |.++|++.+... ..++.. ..-..-.|+|||++|+..+ .|. |.+
T Consensus 294 -~~ivf~Sdr~G~p~I~~~~~~g~~~~---riT~~~---------------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~ 354 (425)
T COG0823 294 -SKIVFTSDRGGRPQIYLYDLEGSQVT---RLTFSG---------------GGNSNPVWSPDGDKIVFESSSGGQWDIDK 354 (425)
T ss_pred -CEEEEEeCCCCCcceEEECCCCCcee---EeeccC---------------CCCcCccCCCCCCEEEEEeccCCceeeEE
Confidence 66666654 554 555565554421 122222 1222678999999999754 355 667
Q ss_pred EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
.|+..... .+.+...... ....|.++|+.++..+.-
T Consensus 355 ~~~~~~~~-~~~lt~~~~~----------------e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 355 NDLASGGK-IRILTSTYLN----------------ESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred eccCCCCc-EEEccccccC----------------CCCCcCCCCceEEEeccC
Confidence 77765332 4444433322 256788888887755443
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.15 E-value=5e-05 Score=71.25 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=58.7
Q ss_pred ccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 313 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 313 ~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
...+.+++++|+.+.++.| .||+|.+||... + +..+.... .++ +.++|+|+|..+++|+..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~-~~P--------------~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAE-FIP--------------TLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeec-ccc--------------eEEEEcCCCcEEEEEcCC
Confidence 5789999999999988876 689999999865 2 22222111 111 589999999999999999
Q ss_pred CcEEEEEeCCCCceeE
Q 011368 392 NLLRIFSHGVGSAGGI 407 (487)
Q Consensus 392 g~i~iwd~~~~~~~~~ 407 (487)
|.+.+||+.-.....+
T Consensus 321 GelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 321 GELQCFDMALSPIKMQ 336 (545)
T ss_pred ceEEEEEeecCcccee
Confidence 9999999986643333
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.13 E-value=0.00051 Score=59.54 Aligned_cols=222 Identities=9% Similarity=0.053 Sum_probs=107.7
Q ss_pred cccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368 200 PHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277 (487)
Q Consensus 200 ~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 277 (487)
+.+-...+..++|+|+.+.|++ . ..+.|..++.+ ++.++.+ .+.+. +-.-.|++.-++ .++++.-.++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i-----~l~g~-~D~EgI~y~g~~-~~vl~~Er~~~ 87 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRI-----PLDGF-GDYEGITYLGNG-RYVLSEERDQR 87 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEE-----E-SS--SSEEEEEE-STT-EEEEEETTTTE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEE-----eCCCC-CCceeEEEECCC-EEEEEEcCCCc
Confidence 3566677999999998665555 5 77788777764 4555554 23343 345788888776 66666556899
Q ss_pred EEEEEccCCccc--cccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCC--CCceeeee-
Q 011368 278 VRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM--DSTPVATF- 351 (487)
Q Consensus 278 i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~- 351 (487)
+.++++...... ....+.+.. .....+...+..++|+|.++.|+.+ ...-..+|.+.. ....+...
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISL--------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEEEEEeccccccchhhceEEec--------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 999988543211 000111111 0011235678999999987766655 444445555442 11111111
Q ss_pred -ecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccc
Q 011368 352 -KIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 429 (487)
Q Consensus 352 -~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 429 (487)
...... ...+.+..+++++|. +.+++.......|.++|. +|+. +..+.-.. +.
T Consensus 160 ~~~~~~~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~-~~~~~L~~-------------g~- 214 (248)
T PF06977_consen 160 DQDLDDD---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRV-VSSLSLDR-------------GF- 214 (248)
T ss_dssp -HHHH-H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--E-EEEEE-ST-------------TG-
T ss_pred ccccccc---------cceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCE-EEEEEeCC-------------cc-
Confidence 111100 012223458999995 556666777788888884 4422 11111000 00
Q ss_pred ccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 430 SSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 430 ~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
. .+...-..-..|+|.++|++.+++=-|-+|+|.
T Consensus 215 -----------~------------gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f~ 248 (248)
T PF06977_consen 215 -----------H------------GLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRFE 248 (248)
T ss_dssp -----------G------------G-SS---SEEEEEE-TT--EEEEETTTEEEEEE
T ss_pred -----------c------------CcccccCCccEEEECCCCCEEEEcCCceEEEeC
Confidence 0 000001133589999999888888777788774
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00038 Score=62.04 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=57.6
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|..++|+|. +..++..++.+..|+|.|+++......
T Consensus 194 ~~IrdlafSp~-~~GLl~~asl~nkiki~dlet~~~vss----------------------------------------- 231 (463)
T KOG1645|consen 194 SFIRDLAFSPF-NEGLLGLASLGNKIKIMDLETSCVVSS----------------------------------------- 231 (463)
T ss_pred hhhhhhccCcc-ccceeeeeccCceEEEEecccceeeeh-----------------------------------------
Confidence 78999999753 333788899999999999998764433
Q ss_pred ceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCc
Q 011368 194 MATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQ 237 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~ 237 (487)
+ ..+ ..+++++|.-| .++|++| .+|.|.+||++.+..
T Consensus 232 -----y-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 232 -----Y-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred -----e-ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 1 334 77999999775 4566777 999999999986543
No 330
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.12 E-value=0.0016 Score=62.08 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=59.5
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~ 345 (487)
..++.++.+|.+..+|..+++. .++.. ......+.. ++..++.+ .++.+..+|..+ +
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~------~W~~~-------------~~~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G 314 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQI------VWKRE-------------YGSVNDFAV--DGGRIYLVDQNDRVYALDTRG-G 314 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCE------EEeec-------------CCCccCcEE--ECCEEEEEcCCCeEEEEECCC-C
Confidence 4677777899999999999863 33320 011112222 23444444 569999999986 6
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
+.+.......... . .+... .+.+|+.++.||.+++.|..+|+.
T Consensus 315 ~~~W~~~~~~~~~-----------~---~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 315 VELWSQSDLLHRL-----------L---TAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred cEEEcccccCCCc-----------c---cCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 5544332111100 0 12222 245778899999999999999854
No 331
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.10 E-value=9e-05 Score=72.71 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=97.6
Q ss_pred eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---------CC
Q 011368 207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RG 276 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---------dg 276 (487)
|.-|+. +++.+.+| ..|+|.+-|.++... . +++.+|.+.|..+. -.| +.|++++. |.
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~-i-------ht~~aHs~siSDfD--v~G-NlLitCG~S~R~~~l~~D~ 246 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFET-I-------HTFDAHSGSISDFD--VQG-NLLITCGYSMRRYNLAMDP 246 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCce-e-------eeeeccccceeeee--ccC-CeEEEeecccccccccccc
Confidence 544444 58899999 999999999985433 3 35688999887655 457 78888875 45
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEeCCeEEEEeCCCCCce-eeeeec
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDSTP-VATFKI 353 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~d~~i~iwd~~~~~~~-~~~~~~ 353 (487)
-|++||+|.-+.+ .-+..+ ..-.-+.|.|. .+..++...|...+-|..+...+ ...+..
T Consensus 247 FvkVYDLRmmral----~PI~~~--------------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v 308 (1118)
T KOG1275|consen 247 FVKVYDLRMMRAL----SPIQFP--------------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV 308 (1118)
T ss_pred hhhhhhhhhhhcc----CCcccc--------------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE
Confidence 6899999986533 111110 11234556664 23333344599999884432333 233222
Q ss_pred ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+... + .+..+++|++|+.|+.|..+|.|.+|.-.
T Consensus 309 ~p~~-----------s--~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 309 NPNG-----------S--GISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccCC-----------C--cceeEEecCCCceEEEecccCcEeeecCC
Confidence 2211 1 11589999999999999999999999843
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.08 E-value=0.00034 Score=70.05 Aligned_cols=190 Identities=13% Similarity=0.095 Sum_probs=109.6
Q ss_pred CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee
Q 011368 217 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 295 (487)
Q Consensus 217 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 295 (487)
...+.| .+..+..||.+..+..+. ... ..-........|++-+.+| +||+|+.+|.||+||- .+...
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v--~~~-~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A------ 610 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLV--DSQ-SKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA------ 610 (794)
T ss_pred CceEEEECCCceEEeccCCCCCcee--ecc-ccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh------
Confidence 455667 999999999986543221 111 1111233456888888887 8999999999999983 32211
Q ss_pred ecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC-C----ce--eeeeecccccccccccc----
Q 011368 296 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD-S----TP--VATFKIHEHLRPKLCDL---- 364 (487)
Q Consensus 296 ~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~-~----~~--~~~~~~~~~~~~~~~~~---- 364 (487)
++.+++...+|..|..+.||++|++..+..|.+++.... + +. ...+.....+.+....+
T Consensus 611 ----------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~ 680 (794)
T PF08553_consen 611 ----------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEH 680 (794)
T ss_pred ----------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHH
Confidence 112333457999999999999999888788888886321 1 11 11222111111111110
Q ss_pred ---c--CCCCcceeeEEEEcC----CCCEEEEEcCCCcEEEEEeCC---CCceeEEEeccCCccccceEeeCCcccc
Q 011368 365 ---Y--NNDSIFDKFECSVSG----DGLHFATGSYSNLLRIFSHGV---GSAGGITVEAGKNENRKPILQAAPRARR 429 (487)
Q Consensus 365 ---~--~~~~~~~~~~~~~s~----d~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 429 (487)
. ....-...+...|+- ..+.|+ .+....+.+|+++. +......++.-...|.+-.|....+..+
T Consensus 681 ~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Iv-tstG~f~v~Wnf~kV~~g~~~~Y~ikry~~~V~~dnF~fg~d~~v 756 (794)
T PF08553_consen 681 VAYMQHETGKPISFTPAKFNTGIGKQETSIV-TSTGPFVVTWNFKKVKRGKKDPYQIKRYDENVVADNFKFGSDKNV 756 (794)
T ss_pred HHHHHhccCCCceeeceEEecCCCCccceEE-EeccCEEEEEEHHHHhCCCCCceEEEEcCCceEEccceeCCCCcE
Confidence 0 011111224566652 234454 45556899999974 3344556665566666666665544443
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.08 E-value=0.011 Score=56.16 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=31.5
Q ss_pred cceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecc
Q 011368 314 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 354 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~ 354 (487)
+++..|++||+|+++|.-.+ |.+.+.+... .+.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 57999999999999998654 9999988765 5556665544
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00044 Score=65.38 Aligned_cols=185 Identities=15% Similarity=0.221 Sum_probs=107.8
Q ss_pred cCcEEEEEEcCCCCEEEEEe---cC-CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGD---RG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~---~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...+..-+|+|+++.++... .. ..+.++++++++.. .+..+.++.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------------------------~i~~~~g~~------ 240 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------------------------VILNFNGNN------ 240 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------------------------eeeccCCcc------
Confidence 44567778999997766553 22 35888888877542 344455555
Q ss_pred cccccccceeEEEEEecCCCcEEEEE-eCCCcEEEE--EccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..-+| +|||++|+.+ ..|+...|| |+.++....+
T Consensus 241 ---------~~P~f--spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L-------------------------------- 277 (425)
T COG0823 241 ---------GAPAF--SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL-------------------------------- 277 (425)
T ss_pred ---------CCccC--CCCCCEEEEEECCCCCccEEEEcCCCCcceec--------------------------------
Confidence 55677 5788877765 466665554 6666553321
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
....+.-..-.|+|||+.|+.. ..|.-.||-....+.....+ +...... ..-.|+
T Consensus 278 ----------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-----T~~~~~~--~~p~~S 334 (425)
T COG0823 278 ----------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-----TFSGGGN--SNPVWS 334 (425)
T ss_pred ----------------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-----eccCCCC--cCccCC
Confidence 1222222356799999999886 55554444433223322222 1222222 267899
Q ss_pred cCCCCEEEEEeCC-Ce--EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 263 PIYCNLLAYSSSR-GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 263 p~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
|+| ++|+..+.. |. |.+.|+.++... +.+.. ......-.|.++|..+...+
T Consensus 335 pdG-~~i~~~~~~~g~~~i~~~~~~~~~~~----~~lt~--------------~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 335 PDG-DKIVFESSSGGQWDIDKNDLASGGKI----RILTS--------------TYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCC-CEEEEEeccCCceeeEEeccCCCCcE----EEccc--------------cccCCCCCcCCCCceEEEec
Confidence 999 888777743 44 566666555421 44443 23345567888888877543
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.06 E-value=4.5e-06 Score=78.31 Aligned_cols=211 Identities=15% Similarity=0.189 Sum_probs=129.5
Q ss_pred ccCcEEEEEEcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 31 h~~~V~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
....+.|+++.-+. .+++.|..+|.|.+-.+....- .......+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------------Ss~E~tp~~a------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------------SSAEVTPGYA------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------------ccceeccccc-------
Confidence 35678899887644 5788999999999887653321 1122233444
Q ss_pred ccccccceeEEEEEecCCCcEEEEEe----CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
...++++|.+ -|...||+|- .|..+.|||+.++-........
T Consensus 103 -----r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~---------------------------- 148 (783)
T KOG1008|consen 103 -----RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL---------------------------- 148 (783)
T ss_pred -----cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCccccc----------------------------
Confidence 6789999974 4566677663 5678999999877321111000
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
+..+......+++|-.+.+++.+| ....+.++|++..-.... .-.+..+..+..+|
T Consensus 149 --------------fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 149 --------------FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------SVNTKYVQGITVDP 205 (783)
T ss_pred --------------cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---------hhhhhhcccceecC
Confidence 011233445588898899999999 888999999982211110 11223466778888
Q ss_pred CCCCEEEEEeCCCeEEEEE-ccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE-eC-CeEEEE
Q 011368 264 IYCNLLAYSSSRGFVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-DY-MNLKLW 339 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~-~d-~~i~iw 339 (487)
-.+.++++-. ||.|.+|| .++-+.. ...... ...+ ....+..++|+|-.. .+++. .| ++|+++
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnienp---l~~i~~-~~N~--------~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIENP---LQIILR-NENK--------KPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhccH---HHHHhh-CCCC--------cccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 4436776655 99999999 4432211 121111 0000 013589999998654 33443 34 999999
Q ss_pred eCCC
Q 011368 340 DIRM 343 (487)
Q Consensus 340 d~~~ 343 (487)
|+..
T Consensus 273 di~~ 276 (783)
T KOG1008|consen 273 DICV 276 (783)
T ss_pred cccc
Confidence 9864
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.98 E-value=0.0059 Score=57.27 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=116.9
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeE--eeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
.|+.+.|+ ++...|+.+...|.|.||.....+... ......+...+-+......+.+.-........ ...
T Consensus 3 ~v~~vs~a--~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~------~~~ 74 (395)
T PF08596_consen 3 SVTHVSFA--PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPS------LKE 74 (395)
T ss_dssp -EEEEEEE--TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-------SE
T ss_pred eEEEEEec--CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcc------ccc
Confidence 48899995 566789999999999999987654332 00000000000011111111111110000000 000
Q ss_pred c-ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC-CCCCCcEEEEEEec-----C
Q 011368 193 N-MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHP-----I 264 (487)
Q Consensus 193 ~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p-----~ 264 (487)
+ .+. .++....++|++++.| |=-+++.| .+|.+.+.|++.+.-... -.+..... ......++++.|.. +
T Consensus 75 gf~P~-~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 75 GFLPL-TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp EEEEE-EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred ccCch-hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCC
Confidence 0 111 1235568999999998 55599999 999999999984433332 22221111 12345688888872 1
Q ss_pred C--CCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEE-EcCC----------------
Q 011368 265 Y--CNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIK-FAND---------------- 324 (487)
Q Consensus 265 ~--~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~-~s~~---------------- 324 (487)
+ .-.+++|+..|.+.+|.+.- ..- .....+... ...+.+.|..+. ++.+
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g--~f~v~~~~~---------~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~ 220 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSSNG--RFSVQFAGA---------TTNHDSPILSIIPINADTGESALATISAMQGLS 220 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-GGG---EEEEEEEE---------E--SS----EEEEEETTT--B-B-BHHHHHGGG
T ss_pred cccceEEEEEeCCCCEEEEEEecCCCC--ceEEEEeec---------cccCCCceEEEEEEECCCCCcccCchhHhhccc
Confidence 1 14788899999999998752 110 000111110 011233444333 2111
Q ss_pred -----CCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEE-----cCCCCEEEEEcCCCcE
Q 011368 325 -----GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-----SGDGLHFATGSYSNLL 394 (487)
Q Consensus 325 -----~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~sg~~dg~i 394 (487)
..+++++++..++++...+ .+............ ..+++ ...+..|++-..+|.|
T Consensus 221 ~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 221 KGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp GT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred cCCCcCcEEEEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecccCCceEEEEEECCCcE
Confidence 1256667778999999876 43333222111110 13444 2356678888999999
Q ss_pred EEEEeCCCCc
Q 011368 395 RIFSHGVGSA 404 (487)
Q Consensus 395 ~iwd~~~~~~ 404 (487)
++|.+..-++
T Consensus 285 ~i~SLP~Lke 294 (395)
T PF08596_consen 285 RIYSLPSLKE 294 (395)
T ss_dssp EEEETTT--E
T ss_pred EEEECCCchH
Confidence 9999987644
No 337
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.95 E-value=0.013 Score=54.91 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=54.4
Q ss_pred cccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc----CC---
Q 011368 310 TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS----GD--- 381 (487)
Q Consensus 310 ~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~d--- 381 (487)
......+.+++.+|++++.++.+. |.|.++|+.. +..++.+++-.+. .+.|- +.
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA-----------------qc~wi~~~~~~~~~ 365 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA-----------------QCGWIEVPEEGDRD 365 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc-----------------eEEEEEeecccccc
Confidence 344566889999999988887765 9999999987 7888888776543 12221 00
Q ss_pred -------------CC-EEEEEcCCCcEEEEEeCCCCc
Q 011368 382 -------------GL-HFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 382 -------------~~-~l~sg~~dg~i~iwd~~~~~~ 404 (487)
.. +++-+-.-|.|.||.+++|..
T Consensus 366 ~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 366 RSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred cccccccCCCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence 11 234566789999999999843
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.95 E-value=0.018 Score=54.13 Aligned_cols=279 Identities=13% Similarity=0.113 Sum_probs=133.6
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCC-----Cccc-chhhhhccccc---------c-ccCCCcceeEeee
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP-----NQHI-SRSELEKQMDF---------T-STSHPEYRYKTEF 97 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~-----~~~~-~~~~~~~~~~~---------~-~~~~~~~~~~~~~ 97 (487)
.|+.+.|+++..-|++|...|.|.||.....+.-+ .... -.+.++..... . ..-...+.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48999999999999999999999999987654321 0000 00001000000 0 0111234455555
Q ss_pred cCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccccc
Q 011368 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (487)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (487)
+... ++|++++. .|=.+++.|..+|.+.|.|+++...+.......
T Consensus 83 ~~~~------------g~vtal~~---S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------- 127 (395)
T PF08596_consen 83 DAKQ------------GPVTALKN---SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------- 127 (395)
T ss_dssp ---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------
T ss_pred eccC------------CcEeEEec---CCCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------
Confidence 5555 89999998 356689999999999999998776554321110
Q ss_pred CCCCcceeeeeeeeccceeeeecccCCCceeEEEeC-----CCC---CEEEEe-cCCeEEEEEccC-CCc--eeEEeecC
Q 011368 178 NPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNN-----SDC---ETFVSA-DDLRINLWNLEI-SDQ--CFNIVDMK 245 (487)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-----~~~---~~l~s~-~d~~i~iwd~~~-~~~--~~~~~~~~ 245 (487)
...-......++++.|+ .|+ -.+++| ..|.+.+|.+.- ... .+...+.
T Consensus 128 -------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~- 187 (395)
T PF08596_consen 128 -------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA- 187 (395)
T ss_dssp ---------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE-
T ss_pred -------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec-
Confidence 00012334556777774 232 466777 889999998762 211 1222111
Q ss_pred CCCCCCCCCcEEEEE-EecCC-------------------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCc
Q 011368 246 PSNMDDLTEVITSAE-FHPIY-------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 305 (487)
Q Consensus 246 ~~~~~~~~~~v~~v~-~~p~~-------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~ 305 (487)
...+.+.|..+. ++.+. -.-++....+..+|++...+.+... +.++.
T Consensus 188 ---~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~---K~~~~------- 254 (395)
T PF08596_consen 188 ---TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH---KSFDD------- 254 (395)
T ss_dssp ---E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE---EE-SS-------
T ss_pred ---cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc---eeecc-------
Confidence 123445555444 32110 0124444456679999888765331 23322
Q ss_pred cccccccccceeEEEEc-----CCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc
Q 011368 306 KSFFTEIIASISDIKFA-----NDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 379 (487)
Q Consensus 306 ~~~~~~~~~~v~~v~~s-----~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 379 (487)
......+.+- ..+..|++- .+|.|++|.+.. -+.+..++........ .....+++
T Consensus 255 -------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~-----------~~~~ssis 315 (395)
T PF08596_consen 255 -------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSR-----------RLSSSSIS 315 (395)
T ss_dssp --------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HH-----------HHTT-EE-
T ss_pred -------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCccccc-----------cccccEEC
Confidence 1223333442 234444443 569999999985 5666666553221000 00256778
Q ss_pred CCCCEEEEEcCCCcEEEEEeC
Q 011368 380 GDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 380 ~d~~~l~sg~~dg~i~iwd~~ 400 (487)
++|..++-.+.. .+.++.+-
T Consensus 316 ~~Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 316 RNGDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp TTS-EEEE-SSS-EEEEEEEE
T ss_pred CCCCEEEEeCcc-cEEEEEEE
Confidence 899877655443 45555544
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.94 E-value=0.008 Score=53.85 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=87.4
Q ss_pred CCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCc-EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccce
Q 011368 216 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 294 (487)
Q Consensus 216 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 294 (487)
..+...|.||++.-..+...++...... + -+..-..+ ...-++...+ ..++.-+.+|.|+--|+....... ..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~ 221 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKST-K--VFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GK 221 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEE-E--ESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EE
T ss_pred CceEEEecCCceEEEEECCCCCEeEeec-c--ccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cC
Confidence 3344445777777777775555442210 0 11111222 2233455555 567778899999888887764211 11
Q ss_pred eecccccccCccccccccccceeEEEEcCCCCEEEE----Ee-----C--CeEEEEeCCCCCceeeeeeccccccccccc
Q 011368 295 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD-----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 363 (487)
Q Consensus 295 ~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s----~~-----d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
.++.- ......... -.+...-+++++....|.. +. + ..|.++|+.+ ++.+..+......
T Consensus 222 ~~~~~-t~~e~~~~W--rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~------ 291 (342)
T PF06433_consen 222 PWSLL-TDAEKADGW--RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI------ 291 (342)
T ss_dssp EEESS--HHHHHTTE--EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE------
T ss_pred ccccc-CccccccCc--CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc------
Confidence 22110 000000000 0134456788876655543 21 2 3588999987 8888888754332
Q ss_pred ccCCCCcceeeEEEEcCCCC-EEEEE-cCCCcEEEEEeCCCCc
Q 011368 364 LYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIFSHGVGSA 404 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~s~d~~-~l~sg-~~dg~i~iwd~~~~~~ 404 (487)
.++..+.|.+ +|++. ..++.+.+||..+|+.
T Consensus 292 ----------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 292 ----------DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ----------SEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ----------ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 3889998765 56544 4678999999999854
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.91 E-value=0.0048 Score=58.68 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=111.3
Q ss_pred cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
........++++|+|++++.+.||.-.|+....... . ..+.-....|.+. ..+|+-...+.|.|+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-k------------~~G~g~~~vw~~~--n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-K------------AFGSGLSFVWSSR--NRYAVLESSSTIKIY 94 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE-E------------EEEE-SEEEE-TS--SEEEEE-TTS-EEEE
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-c------------ccCceeEEEEecC--ccEEEEECCCeEEEE
Confidence 344557899999999999999999998988442211 1 1133456789985 468888778899996
Q ss_pred -EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccc
Q 011368 282 -DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK 360 (487)
Q Consensus 282 -d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 360 (487)
++.... . +.+.. ...+..+-. |.+|...+++.|.+||+.+ ++.++.+.... +
T Consensus 95 kn~~~~~-~----k~i~~--------------~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v-- 147 (443)
T PF04053_consen 95 KNFKNEV-V----KSIKL--------------PFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V-- 147 (443)
T ss_dssp ETTEE-T-T-----------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E-----
T ss_pred EcCcccc-c----eEEcC--------------CcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C--
Confidence 332211 1 22332 122444433 8888888778999999997 88888887554 1
Q ss_pred cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC---------Cc-eeEEEeccCCccccceEeeCCccccc
Q 011368 361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SA-GGITVEAGKNENRKPILQAAPRARRS 430 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 430 (487)
..+.|+++|.+++..+.+ .++|++.+.. -+ ....+..-...|.+.+|.-. .
T Consensus 148 -------------k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~-- 208 (443)
T PF04053_consen 148 -------------KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---C-- 208 (443)
T ss_dssp -------------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---E--
T ss_pred -------------cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---E--
Confidence 389999999999988866 7888776532 01 12222222455555555531 1
Q ss_pred cccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecC-CeEEEE
Q 011368 431 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFH 485 (487)
Q Consensus 431 ~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~ 485 (487)
++.......+-+ .++........+.++.=+...|+.+.+..... .+++.|
T Consensus 209 ----fiYtT~~~lkYl-~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 209 ----FIYTTSNHLKYL-VNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp ----EEEE-TTEEEEE-ETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred ----EEEEcCCeEEEE-EcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence 222222222112 11233333344555555666666666555543 334443
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.88 E-value=0.012 Score=57.33 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=53.6
Q ss_pred cceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCc-----------eeeeeecccccccccccccCCCCcceeeEEEEcC
Q 011368 314 ASISDIKFANDGQHLLSRD--YMNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 380 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 380 (487)
.....+.++|||++++++. ++++.|.|+.+... .+........+ ...+|.+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 4678899999999999864 49999999976221 12222222222 3789999
Q ss_pred CCCEEEEEcCCCcEEEEEeCC
Q 011368 381 DGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 381 d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+|....+---|..|..|++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEeEeecceeEEEehHH
Confidence 998888888899999999986
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.87 E-value=0.0035 Score=63.09 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=88.8
Q ss_pred CEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-------CEEEEE-eCCeEE
Q 011368 267 NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-------QHLLSR-DYMNLK 337 (487)
Q Consensus 267 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-------~~l~s~-~d~~i~ 337 (487)
++|+... ....|.-.|++.|+.+ ..|..|. ..+|.. +.|+. .-.+.| +++.+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~------------~~~v~~--~~p~~K~aqlt~e~tflGls~n~lf 555 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHD------------DIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLF 555 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEE----EEeecCC------------CcceeE--ecccccccccCCCceEEEECCCceE
Confidence 4444443 4578999999999877 7777741 112333 33332 223344 569999
Q ss_pred EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccc
Q 011368 338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 417 (487)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 417 (487)
.||.+..+..+..-..+... ...- ..+++-+.+| +||+|+.+|.||+||- .+..
T Consensus 556 riDpR~~~~k~v~~~~k~Y~---------~~~~--Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~------------- 609 (794)
T PF08553_consen 556 RIDPRLSGNKLVDSQSKQYS---------SKNN--FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKR------------- 609 (794)
T ss_pred EeccCCCCCceeeccccccc---------cCCC--ceEEEecCCc-eEEEEeCCCcEEeecc-cchh-------------
Confidence 99998744322221222211 1111 2466666666 7899999999999983 2211
Q ss_pred cceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 418 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
.+. .+.+...+|.+|..+.||++|+..|...+.|+.
T Consensus 610 ---------AKT------------------------~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 610 ---------AKT------------------------ALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ---------hhh------------------------cCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 110 122445699999999999999999998888764
No 343
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.86 E-value=0.018 Score=52.69 Aligned_cols=168 Identities=12% Similarity=0.048 Sum_probs=72.6
Q ss_pred CCCceeEEEeCCC-CCEEEEe----cCCe-EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe---
Q 011368 203 HDFNINSISNNSD-CETFVSA----DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--- 273 (487)
Q Consensus 203 ~~~~v~~i~~s~~-~~~l~s~----~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--- 273 (487)
....+..+.|+|. ..+|+.| .+.. -+||-+++.+.....+. -......+..=-|.|+|..+...+.
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-----~~~~~e~~gHEfw~~DG~~i~y~~~~~~ 260 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-----RRMEGESVGHEFWVPDGSTIWYDSYTPG 260 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETT
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-----cCCCCcccccccccCCCCEEEEEeecCC
Confidence 3455677888884 4555555 3332 36777765554444321 0112334555668999943333332
Q ss_pred -CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-EeC--C--------------e
Q 011368 274 -SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY--M--------------N 335 (487)
Q Consensus 274 -~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~d--~--------------~ 335 (487)
.+..|.-+|+.+++.. ..... .+..-...++||++++. |+| . -
T Consensus 261 ~~~~~i~~~d~~t~~~~----~~~~~---------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 261 GQDFWIAGYDPDTGERR----RLMEM---------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp T--EEEEEE-TTT--EE----EEEEE----------------SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred CCceEEEeeCCCCCCce----EEEeC---------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 1345666777765421 11111 23344556789988874 333 1 4
Q ss_pred EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEeC
Q 011368 336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHG 400 (487)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~~ 400 (487)
|+++++.. +.. ..+..|...-..+. .+....- -...|||||++++-. ...|...||=++
T Consensus 322 i~~~~~~~-~~~-~~l~~h~~sw~v~~--~~~q~~h--Php~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 322 IYLFDVEA-GRF-RKLARHDTSWKVLD--GDRQVTH--PHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEEETTT-TEE-EEEEE-------BT--TBSSTT------EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred EEEecccc-Cce-eeeeeccCcceeec--CCCccCC--CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 56677764 332 22322321000000 0000000 268999999987644 456777776554
No 344
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.84 E-value=0.0052 Score=53.92 Aligned_cols=194 Identities=15% Similarity=0.113 Sum_probs=105.0
Q ss_pred CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEE
Q 011368 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (487)
Q Consensus 43 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~ 122 (487)
++.++++++.++.|..||..+++.. -.+... +.+.....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~---------------------------W~~~~~-------------~~~~~~~~- 73 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVL---------------------------WRFDLP-------------GPISGAPV- 73 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEE---------------------------EEEECS-------------SCGGSGEE-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEeecc-------------ccccceee-
Confidence 5667777788999999999888642 111211 11111111
Q ss_pred ecCCCcEEEEEeCCCcEEEEEccccceeEee-ecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecc
Q 011368 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPH 201 (487)
Q Consensus 123 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (487)
..+..++.++.++.+..+|..+|+..... ....+. .
T Consensus 74 --~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----------------------------------------~ 110 (238)
T PF13360_consen 74 --VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-----------------------------------------A 110 (238)
T ss_dssp --EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-----------------------------------------C
T ss_pred --ecccccccccceeeeEecccCCcceeeeeccccccc-----------------------------------------c
Confidence 23456777778889999999999876541 111000 0
Q ss_pred cCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC---CCcEEEEEEecCCCCEEEEEeCCCe
Q 011368 202 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGF 277 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~dg~ 277 (487)
. ........+ ++..++.+ .++.|..+|.+++....+. .........+ ...+..-....++ .++.++.++.
T Consensus 111 ~-~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~ 184 (238)
T PF13360_consen 111 G-VRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGR 184 (238)
T ss_dssp S-TB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSS
T ss_pred c-cccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEEECC--EEEEEcCCCe
Confidence 0 011111222 26777777 7999999999965544433 1110000000 0111222222233 5666666664
Q ss_pred -EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368 278 -VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 278 -i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
+.+ |+.+++. .++. . ...+..+ ...++..|+.++ ++.|..||+++ ++.+
T Consensus 185 ~~~~-d~~tg~~------~w~~-~------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t-G~~~ 235 (238)
T PF13360_consen 185 VVAV-DLATGEK------LWSK-P------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT-GKVV 235 (238)
T ss_dssp EEEE-ETTTTEE------EEEE-C------------SS-ECEC-EECCCTEEEEEETTTEEEEEETTT-TEEE
T ss_pred EEEE-ECCCCCE------EEEe-c------------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC-CCEE
Confidence 555 9999872 2322 0 0122221 345667777765 69999999997 6554
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.83 E-value=0.011 Score=57.63 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=25.5
Q ss_pred eEEEEcCCCCEEEEEc-CCCcEEEEEeCCCC
Q 011368 374 FECSVSGDGLHFATGS-YSNLLRIFSHGVGS 403 (487)
Q Consensus 374 ~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~ 403 (487)
..+.+||||+++++++ .++++.|+|+++.+
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 5899999999987666 47999999998754
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.80 E-value=0.0083 Score=56.13 Aligned_cols=234 Identities=14% Similarity=0.093 Sum_probs=113.0
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEee-cCCCCCCCC---------CCcEEEEEEecCCCCEEEEEe
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-MKPSNMDDL---------TEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~---------~~~v~~v~~~p~~~~~l~~~~ 273 (487)
...+....|+|+|+.++...++.|.+++...+ ...++.. .....+.+- -+.-..+-|+|++ +.||...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCC-CeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEE
Confidence 56788999999999999998899999988744 3332211 100000000 0112457899999 7777665
Q ss_pred C-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeee
Q 011368 274 S-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 274 ~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 352 (487)
. +..++.+.+-.-.... . . -..+..+.+-.-|.-.. .-.+.|+|+.+ ++.. .+.
T Consensus 120 ~d~~~v~~~~~~~~~~~~---~---~--------------yp~~~~~~YPk~G~~np---~v~l~v~~~~~-~~~~-~~~ 174 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPD---S---Q--------------YPEVESIRYPKAGDPNP---RVSLFVVDLAS-GKTT-ELD 174 (353)
T ss_dssp EE-TTS-EEEEEEESSST---E---S--------------S-EEEEEE--BTTS------EEEEEEEESSS-TCCC-EE-
T ss_pred ECCcCCceEEeeccCCcc---c---c--------------CCcccccccCCCCCcCC---ceEEEEEECCC-CcEE-Eee
Confidence 4 3444444332210000 0 0 01244444432232211 13567788875 3332 221
Q ss_pred cccccccccccccCCCCcceeeEEEEcCCCCEEEEE--cCC---CcEEEEEeCCCCceeEEEeccCCccc---cceEeeC
Q 011368 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYS---NLLRIFSHGVGSAGGITVEAGKNENR---KPILQAA 424 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg--~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~---~~~~~~~ 424 (487)
...... ..+. -+..+.|+++++.|+.. +.+ ..+.+.|..++......-+....++. ...+...
T Consensus 175 ~~~~~~-------~~~~--yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 175 PPNSLN-------PQDY--YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp --HHHH-------TSSE--EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred eccccC-------CCcc--CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence 110000 0011 12589999999844433 333 24778888887665555455555553 2222211
Q ss_pred Cccccccccceeeecccce-ecC---CCCCccccccccCCCeEE-EEEcCCCCEEE-Eec
Q 011368 425 PRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLH-LAWHPTTNLIA-CAN 478 (487)
Q Consensus 425 ~~~~~~~~~~l~~g~~~~~-~~w---~~~~~~~~~~~~~~~v~~-~~~spd~~~la-~~s 478 (487)
....+ +.....+|- +++ ..+.....+....-.|.. +.|.++++.|. +|.
T Consensus 246 ~~~~~-----l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 246 DGNEF-----LWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp TSSEE-----EEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred CCCEE-----EEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEec
Confidence 22222 444446666 666 222233334444445644 68899987765 444
No 347
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.72 E-value=0.012 Score=53.73 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=49.8
Q ss_pred CCcEEEEEEecCCCCEEEEEeC---CC-eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368 253 TEVITSAEFHPIYCNLLAYSSS---RG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 328 (487)
Q Consensus 253 ~~~v~~v~~~p~~~~~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 328 (487)
...+..+.|+|..+.+|+.|-+ +. .-|||-+++...-. +.+..|. + ...+.-=-|.|||..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~--~---------~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRM--E---------GESVGHEFWVPDGSTI 252 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS-----T---------TEEEEEEEE-TTSS-E
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCC--C---------CcccccccccCCCCEE
Confidence 3557789999988677777655 22 13667665432111 1111110 0 1234444688999877
Q ss_pred EE-E-e----CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 329 LS-R-D----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 329 ~s-~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
.- + . +..|.-+|+.+ ............ ..+..++||++++-=+.|
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p~~-----------------~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDT-GERRRLMEMPWC-----------------SHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT---EEEEEEE-SE-----------------EEEEE-TTSSEEEEEE--
T ss_pred EEEeecCCCCceEEEeeCCCC-CCceEEEeCCce-----------------eeeEEcCCCCEEEecCCC
Confidence 63 1 1 24566777776 332222222111 256677899987754444
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.72 E-value=0.016 Score=55.19 Aligned_cols=229 Identities=11% Similarity=0.150 Sum_probs=110.6
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
....+.++|+|++++.+ .||...|+.....+. ...
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-----------------------------k~~--------------- 68 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-----------------------------KAF--------------- 68 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-----------------------------EEE---------------
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-----------------------------ccc---------------
Confidence 57899999999999885 578888888322211 111
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEE-EccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLW-KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
+.-....|. + ...+|+-...++|.++ ++.......+
T Consensus 69 G~g~~~vw~--~-~n~yAv~~~~~~I~I~kn~~~~~~k~i---------------------------------------- 105 (443)
T PF04053_consen 69 GSGLSFVWS--S-RNRYAVLESSSTIKIYKNFKNEVVKSI---------------------------------------- 105 (443)
T ss_dssp EE-SEEEE---T-SSEEEEE-TTS-EEEEETTEE-TT-------------------------------------------
T ss_pred CceeEEEEe--c-CccEEEEECCCeEEEEEcCccccceEE----------------------------------------
Confidence 334567784 4 4457777778889996 3432221111
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.....+..|-. |.+|....++.|.+||+.+ ++.+..++ . ..|..+.|+++| .+++..
T Consensus 106 ---------~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~--------v-~~vk~V~Ws~~g-~~val~ 162 (443)
T PF04053_consen 106 ---------KLPFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRID--------V-SAVKYVIWSDDG-ELVALV 162 (443)
T ss_dssp -----------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEES--------S--E-EEEEE-TTS-SEEEEE
T ss_pred ---------cCCcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEe--------c-CCCcEEEEECCC-CEEEEE
Confidence 00112333322 8888887666999999994 45554431 1 238999999999 888888
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 352 (487)
+.+ .+.|++....... . ... ..-........+....|.+.+|..+ -++.+.. +.++.+- . +. ...+.
T Consensus 163 t~~-~i~il~~~~~~~~----~-~~~-~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~~lkYl~--~-Ge-~~~i~ 229 (443)
T PF04053_consen 163 TKD-SIYILKYNLEAVA----A-IPE-EGVEDAFELIHEISERIKSGCWVED-CFIYTTS-NHLKYLV--N-GE-TGIIA 229 (443)
T ss_dssp -S--SEEEEEE-HHHHH----H-BTT-TB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-TEEEEEE--T-TE-EEEEE
T ss_pred eCC-eEEEEEecchhcc----c-ccc-cCchhceEEEEEecceeEEEEEEcC-EEEEEcC-CeEEEEE--c-CC-cceEE
Confidence 866 4666654432000 0 000 0000000001111357888999866 3444444 3666622 1 21 22222
Q ss_pred cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
.-..+. .=+...|..+.+.....|+.+..+.+..
T Consensus 230 ~ld~~~---------------yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 230 HLDKPL---------------YLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp E-SS-----------------EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcCCce---------------EEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 112211 2466667667788888888888887764
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.65 E-value=0.042 Score=49.42 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=91.9
Q ss_pred EEEeCCCCCEEEE----------e-cCCeEEEEEccCCCceeEEeecCCC-CCCCCCCcEEEEEEecCCCCEEEEEeC--
Q 011368 209 SISNNSDCETFVS----------A-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSS-- 274 (487)
Q Consensus 209 ~i~~s~~~~~l~s----------~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~-- 274 (487)
.+..+|+++.+++ | +.-.|.+||..+-....+ +.+++. ... .......++++.++ +++++...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E-I~iP~k~R~~-~~~~~~~~~ls~dg-k~~~V~N~TP 116 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE-IEIPPKPRAQ-VVPYKNMFALSADG-KFLYVQNFTP 116 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE-EEETTS-B---BS--GGGEEE-TTS-SEEEEEEESS
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce-EecCCcchhe-ecccccceEEccCC-cEEEEEccCC
Confidence 3567899998876 3 345689999995443333 223321 111 11122345788888 77777643
Q ss_pred CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecc
Q 011368 275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIH 354 (487)
Q Consensus 275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~ 354 (487)
.-.|.|.|+..++.. ..+.. ..+..+-=+++..+...|.||.+.-..+...++........
T Consensus 117 a~SVtVVDl~~~kvv----~ei~~---------------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~ 177 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVV----GEIDT---------------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKV 177 (342)
T ss_dssp SEEEEEEETTTTEEE----EEEEG---------------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEE
T ss_pred CCeEEEEECCCCcee----eeecC---------------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccc
Confidence 457999999987654 33333 12333333344456667888999988888666665222110
Q ss_pred cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
- ....+.++ ..-+++..+..++--+.+|.|+--|+....
T Consensus 178 F--------~~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 178 F--------DPDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp S--------STTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred c--------CCCCcccc--cccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 0 01122232 345566555556668889999998887654
No 350
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.021 Score=49.19 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=69.3
Q ss_pred CCceeEEEeCCCC-CEEEEe-cCC-eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----
Q 011368 204 DFNINSISNNSDC-ETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----- 275 (487)
Q Consensus 204 ~~~v~~i~~s~~~-~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d----- 275 (487)
......|+++|.. .-++.+ .-| ...++|.......+.+...+.+.+.+|. .|+|+| .+|+..-.|
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG-~~LYATEndfd~~r 139 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDG-RLLYATENDFDPNR 139 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCC-cEEEeecCCCCCCC
Confidence 4455678888864 445556 544 4678899865555544433334444553 589999 887776543
Q ss_pred CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
|.|-|||.+.+- +.+-.|..| --.-..+.|.+||+.|+.+.
T Consensus 140 GViGvYd~r~~f---qrvgE~~t~-------------GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 140 GVIGVYDAREGF---QRVGEFSTH-------------GIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ceEEEEeccccc---ceecccccC-------------CcCcceeEEecCCcEEEEeC
Confidence 789999998542 223444443 34567899999999998754
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.57 E-value=0.054 Score=48.73 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=119.5
Q ss_pred CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccc
Q 011368 215 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 293 (487)
Q Consensus 215 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 293 (487)
.++.|+.| .+| +++++........++. +...|..+...|+- +.+++-+ |+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccc
Confidence 57888888 887 9999994334333332 22339999999986 6665554 4999999998754321100
Q ss_pred eeecccccccCccccccccccceeEEE---EcCCCCEEEEEeCCeEEEEeCCCC---C-ceeeeeecccccccccccccC
Q 011368 294 RILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLYN 366 (487)
Q Consensus 294 ~~~~~h~~~~~~~~~~~~~~~~v~~v~---~s~~~~~l~s~~d~~i~iwd~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 366 (487)
.... .......... .....+...+ -...+..|+++....|.+|..... . ...+.+.....+
T Consensus 74 -~~~~-~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~--------- 141 (275)
T PF00780_consen 74 -PLAF-PKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP--------- 141 (275)
T ss_pred -cccc-cccccccccc-cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc---------
Confidence 0000 0000000000 0012334333 223345666666679998887642 2 345555555443
Q ss_pred CCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC---------ccccceEeeCCccccccccceee
Q 011368 367 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLTR 437 (487)
Q Consensus 367 ~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~l~~ 437 (487)
..++|. ++.|+.|..+ ...+.|+.++.... .+..... ....+......++.+ |+.
T Consensus 142 -------~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----Ll~ 205 (275)
T PF00780_consen 142 -------SSIAFL--GNKICVGTSK-GFYLIDLNTGSPSE-LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEF-----LLC 205 (275)
T ss_pred -------EEEEEe--CCEEEEEeCC-ceEEEecCCCCceE-EeCccCCcchhhhcccCCCceEEEEeCCceE-----EEE
Confidence 488888 5577777765 47788999764321 1111111 111122222112232 333
Q ss_pred ecccceecCCCCCccc-cccccCCCeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368 438 GLYRQAHENSSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 487 (487)
Q Consensus 438 g~~~~~~~w~~~~~~~-~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~~ 487 (487)
...-+..+-..++... ..........++++ ..++|+.-..+.+-||++
T Consensus 206 ~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~~ 254 (275)
T PF00780_consen 206 YDNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRSL 254 (275)
T ss_pred ecceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCCEEEEEEC
Confidence 2211113333333222 23334445566666 357888888888888864
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.002 Score=59.90 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=91.7
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE--------EEEEeCCeEEEE
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH--------LLSRDYMNLKLW 339 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~--------l~s~~d~~i~iw 339 (487)
++..+.....++-.|++.|+.+ ..|..| ..|+-+.+.|+.+. |+.-+++.|.-|
T Consensus 348 il~~~~~~~~l~klDIE~GKIV----eEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV----EEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred EeeCCCCcCcceeeecccceee----eEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence 3444555667888899999876 677763 34777778777542 222356999999
Q ss_pred eCCCCCc-eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368 340 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 418 (487)
Q Consensus 340 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 418 (487)
|.+..+. .+...+.|+.... .- ..+.+-..+ .+|++||.+|.|++||. .+.. +
T Consensus 410 DpRv~~~~kl~~~q~kqy~~k---------~n--Fsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~-------------A 463 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYSTK---------NN--FSCFATTES-GYIVVGSLKGDIRLYDR-IGRR-------------A 463 (644)
T ss_pred cccccCcceeeeeeccccccc---------cc--cceeeecCC-ceEEEeecCCcEEeehh-hhhh-------------h
Confidence 9986554 3334444443211 11 124444444 48999999999999997 4411 1
Q ss_pred ceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEE
Q 011368 419 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 484 (487)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i 484 (487)
- ..+.++..+|.+|..+.||++|+..|...+.+
T Consensus 464 K---------------------------------TAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 464 K---------------------------------TALPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred h---------------------------------hcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 1 12234556899999999999999998887665
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0041 Score=61.15 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.+++++|+|..-.|+.|-.-|.+.+|...+.+. .+....|.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---------------------------htv~~th~------------ 101 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---------------------------HTVVETHP------------ 101 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCcee---------------------------eeeccCCC------------
Confidence 357899999998999999999999999776543 35556677
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~ 145 (487)
.+|..+.| +++|..++++..-|.+.+|...
T Consensus 102 a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 102 APIQGLDW--SHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeEEe--cCCCCeEEEcCCCceeEEEEee
Confidence 89999999 6899999999999999999876
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.0053 Score=52.66 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=51.9
Q ss_pred cCCCceeEEEeCCCCCEEEEe-cCCeE----EEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-CC
Q 011368 202 AHDFNINSISNNSDCETFVSA-DDLRI----NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR 275 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i----~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d 275 (487)
-+.-.|+.++..+||+..+.| ..|.- -+--....+..++.+++++.........|-+++.+... .+++..+ ..
T Consensus 223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~G 301 (366)
T COG3490 223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRG 301 (366)
T ss_pred hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCC
Confidence 345568888888898888876 43321 11122224445555444433333444567788888655 4444444 55
Q ss_pred CeEEEEEccCCccc
Q 011368 276 GFVRLVDMRQSALC 289 (487)
Q Consensus 276 g~i~iwd~~~~~~~ 289 (487)
+...+||..++...
T Consensus 302 N~~vi~da~tG~vv 315 (366)
T COG3490 302 NRAVIWDAATGAVV 315 (366)
T ss_pred CeEEEEEcCCCcEE
Confidence 67889999999754
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.014 Score=42.89 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=65.6
Q ss_pred eeEEEEEecCC--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 116 INRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 116 I~~v~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
|++++++.... ...|++|+.|..||+|+-+.- ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~E----------------------------------------- 38 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAE----------------------------------------- 38 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEE-----------------------------------------
Confidence 67777764222 267999999999999975432 211
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe---cCCCCEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLL 269 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~---p~~~~~l 269 (487)
....+.|.+++-... ..++.+ .+|+|-+|+-. .+.+++ +. ...+.++.+. -+|...|
T Consensus 39 -------i~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi--------KS-K~~~~~~~~~D~~gdG~~eL 99 (111)
T PF14783_consen 39 -------ITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI--------KS-KNQVTSMAFYDINGDGVPEL 99 (111)
T ss_pred -------EecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee--------cc-CCCeEEEEEEcCCCCCceEE
Confidence 233556777777655 567788 99999999764 333332 11 2225555543 3454578
Q ss_pred EEEeCCCeEEE
Q 011368 270 AYSSSRGFVRL 280 (487)
Q Consensus 270 ~~~~~dg~i~i 280 (487)
++|-.+|.|-+
T Consensus 100 I~GwsnGkve~ 110 (111)
T PF14783_consen 100 IVGWSNGKVEV 110 (111)
T ss_pred EEEecCCeEEe
Confidence 99988887743
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0011 Score=62.91 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEE-EEEEecCCCCEEEEEeCCCeEEE
Q 011368 203 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRL 280 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~dg~i~i 280 (487)
-...+.-+.|+|.-.+||.+ .+|.|.+..++ -.+.+. ++-++..++ +++|.|+| +.||+|-.||+|++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L 88 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRL 88 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEE
Confidence 34567889999999999999 99999999888 444432 333555555 99999999 99999999999999
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 323 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~ 323 (487)
.|..++..+.... +.. ...|.++.|.+
T Consensus 89 ~Dve~~~~l~~~~--~s~--------------e~~is~~~w~~ 115 (665)
T KOG4640|consen 89 HDVEKGGRLVSFL--FSV--------------ETDISKGIWDR 115 (665)
T ss_pred EEccCCCceeccc--ccc--------------ccchheeeccc
Confidence 9999987653221 222 34678888863
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.35 E-value=0.08 Score=48.87 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=70.2
Q ss_pred cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
...++|++++-- +..|+++.++.|.+|++.........- .......+.++... + +++++|..-..+.++
T Consensus 86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLL 154 (321)
T ss_dssp EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence 446778888766 345888877899999999555233221 11122356666655 4 689999888888887
Q ss_pred EccCCcc-ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCC
Q 011368 282 DMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 342 (487)
Q Consensus 282 d~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~ 342 (487)
..+.... + ..+.. .....+++++.+-++++.+++++. |.+.++...
T Consensus 155 ~~~~~~~~l----~~va~-----------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNKL----ILVAR-----------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE-E----EEEEE-----------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCEE----EEEEe-----------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 5554211 1 11111 001346888888867677777765 999999875
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.29 E-value=0.17 Score=48.16 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.8
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEEEcc
Q 011368 205 FNINSISNNSDCETFVSADDLRINLWNLE 233 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~ 233 (487)
+.|.++.|+.+.++++...||.+++||+.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 78999999988777777799999999997
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.28 E-value=0.00045 Score=40.10 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=28.4
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~ 60 (487)
.|...|++++|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3677899999999999999999999999996
No 360
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.25 E-value=0.14 Score=47.65 Aligned_cols=118 Identities=11% Similarity=0.166 Sum_probs=52.2
Q ss_pred CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEeCCCeEEEEEc-cCCccccccceeecccc
Q 011368 224 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAA 300 (487)
Q Consensus 224 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~h~ 300 (487)
..++.+||+. ..+..+.+++. .....+..|.|. |+...-++.+--..+|..|-- +.++-..+ ++.+. .
T Consensus 221 G~~l~vWD~~-~r~~~Q~idLg-----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~i-p 291 (461)
T PF05694_consen 221 GHSLHVWDWS-TRKLLQTIDLG-----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDI-P 291 (461)
T ss_dssp --EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE--
T ss_pred cCeEEEEECC-CCcEeeEEecC-----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee--EEEEC-C
Confidence 4789999999 56677766543 112234455554 444122333333445554433 44432111 11111 0
Q ss_pred cccCcccc-------ccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeee
Q 011368 301 ESHGSKSF-------FTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 301 ~~~~~~~~-------~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~ 350 (487)
..+..... |..-..-|+.|..|.|.++|..+. .|.|+.||+....++...
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 00000011 111135689999999999999875 599999999865555443
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.12 Score=45.02 Aligned_cols=176 Identities=9% Similarity=0.071 Sum_probs=99.4
Q ss_pred ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368 201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 279 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 279 (487)
.+-...+.++.|+|+.+.|++- ....- |-.+.+.+..+..+ .+.+-.+ ...+.+.-.| ++.++--.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~-iVElt~~Gdlirti-----PL~g~~D-pE~Ieyig~n-~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAA-IVELTKEGDLIRTI-----PLTGFSD-PETIEYIGGN-QFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCce-EEEEecCCceEEEe-----cccccCC-hhHeEEecCC-EEEEEehhcceEE
Confidence 4556679999999999999887 44443 33455567777765 2333322 3567777777 7777777788998
Q ss_pred EEEccCCccccccce-eecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCce--eeeeeccc
Q 011368 280 LVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHE 355 (487)
Q Consensus 280 iwd~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~--~~~~~~~~ 355 (487)
++.+........... .+.. ....+-+.....++|.|..+.|..+-. +=+.||.+...... +.....+.
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L--------~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPL--------GTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred EEEEcCCccEEeccceEEec--------cccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 887776532211101 1111 001111457889999998887777643 55555555421111 11111111
Q ss_pred ccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeC
Q 011368 356 HLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~ 400 (487)
... ++ .+.++.++.|.+. +..|+-+.+++.+.-.|..
T Consensus 226 ~~~----~~----f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 226 ADR----DL----FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ccc----ce----EeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 110 00 1223457888874 5556666666777666665
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.22 E-value=0.026 Score=41.53 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=64.4
Q ss_pred EEEEEE---ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 256 ITSAEF---HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 256 v~~v~~---~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
|+++++ .-+|.+.|++|+.|..||+|+-.. .+ ..+.. ...|..++-...+++.++-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~----~Ei~e--------------~~~v~~L~~~~~~~F~Y~l~ 61 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IV----AEITE--------------TDKVTSLCSLGGGRFAYALA 61 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EE----EEEec--------------ccceEEEEEcCCCEEEEEec
Confidence 444444 445668999999999999997553 22 34444 46788888887766555546
Q ss_pred CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC---CC-CEEEEEcCCCcEE
Q 011368 333 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DG-LHFATGSYSNLLR 395 (487)
Q Consensus 333 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~-~~l~sg~~dg~i~ 395 (487)
+|+|-+|+- ...+...+..... +++++.. || ..|++|-.+|.|-
T Consensus 62 NGTVGvY~~---~~RlWRiKSK~~~----------------~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 62 NGTVGVYDR---SQRLWRIKSKNQV----------------TSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCEEEEEeC---cceeeeeccCCCe----------------EEEEEEcCCCCCceEEEEEecCCeEE
Confidence 699988875 2334444433332 2554433 33 3688888888774
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.002 Score=61.17 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=71.3
Q ss_pred cceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 314 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
..+..+.|+|.-.++|.+. +|.|-++.+. ...+.++..+...+. ++++|.|||+.||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence 4688899999999999885 5989999886 566667765554331 3899999999999999999
Q ss_pred cEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 393 LLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 393 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
+|++.|+.++......+-.-...+..+.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999999866544433444555555554
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.05 E-value=0.37 Score=47.37 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCcEEEEEeCCCCce
Q 011368 381 DGLHFATGSYSNLLRIFSHGVGSAG 405 (487)
Q Consensus 381 d~~~l~sg~~dg~i~iwd~~~~~~~ 405 (487)
.+..|++++.||.|+.+|.++|+..
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee
Confidence 4568888999999999999999553
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.04 E-value=0.0021 Score=37.06 Aligned_cols=36 Identities=28% Similarity=0.634 Sum_probs=29.9
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd 143 (487)
...+..|. ..|.+++|. +++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~------------~~i~~~~~~--~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHT------------GPVTSVAFS--PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecC------------CceeEEEEC--CCCCEEEEecCCCeEEEcC
Confidence 45566777 889999994 5678999999999999996
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.01 E-value=0.14 Score=47.34 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=81.2
Q ss_pred CeEEEEEccCC---CceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCc-cccccceeecccc
Q 011368 225 LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA 300 (487)
Q Consensus 225 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~h~ 300 (487)
|.|.++++... ...++.+. -....++|++++-- .+ .|+++. .+.|.+|++...+ +.. ...+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~-----~~~~~g~V~ai~~~-~~--~lv~~~-g~~l~v~~l~~~~~l~~--~~~~~~-- 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH-----STEVKGPVTAICSF-NG--RLVVAV-GNKLYVYDLDNSKTLLK--KAFYDS-- 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE-----EEEESS-EEEEEEE-TT--EEEEEE-TTEEEEEEEETTSSEEE--EEEE-B--
T ss_pred cEEEEEEEEcccccceEEEEEE-----EEeecCcceEhhhh-CC--EEEEee-cCEEEEEEccCcccchh--hheecc--
Confidence 88999999853 12333221 12346778888866 44 444443 4789999999876 221 011111
Q ss_pred cccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc
Q 011368 301 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 379 (487)
Q Consensus 301 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 379 (487)
...+.++... +.+++.|+- ..+.++..+.....+..+....... +++++.+-
T Consensus 129 ------------~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l 181 (321)
T PF03178_consen 129 ------------PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL 181 (321)
T ss_dssp ------------SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred ------------eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence 2345555554 558888874 7888776554344344444322222 23578887
Q ss_pred CCCCEEEEEcCCCcEEEEEeCC
Q 011368 380 GDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 380 ~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+|++.++++..+|.+.++....
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCcEEEEEcCCCeEEEEEECC
Confidence 6667899999999999999874
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.99 E-value=0.37 Score=46.35 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=75.2
Q ss_pred eeEEEeCCCCCEEEEe----cC-CeEEEEEccCC---CceeEEeecCCCCCCCCCCcE-EEEEEecCCCCEEEEEeC---
Q 011368 207 INSISNNSDCETFVSA----DD-LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVI-TSAEFHPIYCNLLAYSSS--- 274 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~----~d-~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v-~~v~~~p~~~~~l~~~~~--- 274 (487)
...+..++|+++|+.. .+ ..+.+.++... ......+ ......+ ..+... .+ .+++....
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l-------~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~ 299 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL-------SPREDGVEYYVDHH-GD-RLYILTNDDAP 299 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE-------EESSSS-EEEEEEE-TT-EEEEEE-TT-T
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE-------eCCCCceEEEEEcc-CC-EEEEeeCCCCC
Confidence 5678889999998763 23 45778888743 2222222 1222233 333333 33 34444332
Q ss_pred CCeEEEEEccCCccccccceeecccccccCcccccccccc--ceeEEEEcCCCCEEEEE--eC--CeEEEEeCCCCCcee
Q 011368 275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR--DY--MNLKLWDIRMDSTPV 348 (487)
Q Consensus 275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~s~--~d--~~i~iwd~~~~~~~~ 348 (487)
.+.|.-.++......... ..+-. +.. .+..+... +.+|+.. .+ ..|+++++.. +...
T Consensus 300 ~~~l~~~~l~~~~~~~~~-~~l~~-------------~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~-~~~~ 362 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWW-TVLIP-------------EDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDD-GKES 362 (414)
T ss_dssp T-EEEEEETTSTSGGGEE-EEEE---------------SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT--TEEE
T ss_pred CcEEEEecccccccccce-eEEcC-------------CCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCC-CcEE
Confidence 356666676664421000 11111 223 35555543 4555543 34 6789999872 4444
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEE--EEcC--CCcEEEEEeCCCCce
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA--TGSY--SNLLRIFSHGVGSAG 405 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~--sg~~--dg~i~iwd~~~~~~~ 405 (487)
..+...... . +..+...+++..+. ..|. -++++.||+.+++..
T Consensus 363 ~~~~~p~~g-----------~---v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 363 REIPLPEAG-----------S---VSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEESSSSS-----------E---EEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred eeecCCcce-----------E---EeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 444433321 0 12444444444332 2222 367888999888543
No 368
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.38 Score=45.48 Aligned_cols=156 Identities=11% Similarity=0.077 Sum_probs=101.3
Q ss_pred ceeEEEeCCCCCEEEEe-c---CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE-eCCCeEEE
Q 011368 206 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 280 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~i 280 (487)
....++++|+++.+..+ . ++++.+.|..+...... .. .+- .+ ..++++|+| +.++.. ..++.|.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~------vG~-~P-~~~a~~p~g-~~vyv~~~~~~~v~v 186 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP------VGN-TP-TGVAVDPDG-NKVYVTNSDDNTVSV 186 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee------cCC-Cc-ceEEECCCC-CeEEEEecCCCeEEE
Confidence 56789999999888887 4 57888888774443332 21 111 22 789999999 655444 47899999
Q ss_pred EEccCCcccc-ccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC----CeEEEEeCCCCCceeee-eecc
Q 011368 281 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIH 354 (487)
Q Consensus 281 wd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d----~~i~iwd~~~~~~~~~~-~~~~ 354 (487)
.|........ ........ ...-..+.++|+|.++....+ +.+...|..+ +..... +...
T Consensus 187 i~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~ 251 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG 251 (381)
T ss_pred EeCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccc
Confidence 9977654320 00000111 234577899999997776532 4788888875 433332 2222
Q ss_pred c-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCC
Q 011368 355 E-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 402 (487)
Q Consensus 355 ~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~ 402 (487)
. .+ ..+..+|+|+++.+... .+.+.+.|..+.
T Consensus 252 ~~~~----------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 252 SGAP----------------RGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred cCCC----------------CceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 2 11 37899999999888744 488999998876
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.85 E-value=0.68 Score=47.29 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=62.1
Q ss_pred CcceeeEEEEcCC-CCEEEEEcC----------CCcEEEEEeCCCCc-eeEEEeccCCccccceEeeCCcccccccccee
Q 011368 369 SIFDKFECSVSGD-GLHFATGSY----------SNLLRIFSHGVGSA-GGITVEAGKNENRKPILQAAPRARRSSLSNLT 436 (487)
Q Consensus 369 ~~~~~~~~~~s~d-~~~l~sg~~----------dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 436 (487)
+...+.++.|..| +.++++|+. .|.|.|+.+..++. ....-..-++.+.++..- ++++ +|
T Consensus 773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f---ngkl-----lA 844 (1096)
T KOG1897|consen 773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF---NGKL-----LA 844 (1096)
T ss_pred eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh---CCeE-----EE
Confidence 4444457778877 777877753 48899999887322 111111112333333222 4554 45
Q ss_pred eecccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEec
Q 011368 437 RGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 478 (487)
Q Consensus 437 ~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s 478 (487)
+-+..-. .-|.....+.....+..++..+...-.|+.||+|.
T Consensus 845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence 4444444 66766656666667778888888888888888887
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.82 E-value=0.19 Score=50.03 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=45.0
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEE---EEccCCCceeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368 204 DFNINSISNNSDCETFVSADDLRINL---WNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVR 279 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~i---wd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 279 (487)
...|..+.|||||..++.-.++.|++ -... .+. ..+. .+..+. +....+.++.|.+++ . |+++..++.-.
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~-~G~-~~l~--~~~~l~~~l~~~~~~l~W~~~~-~-L~V~~~~~~~~ 520 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIGGKVYLAVVEQTE-DGQ-YALT--NPREVGPGLGDTAVSLDWRTGD-S-LVVGRSDPEHP 520 (591)
T ss_pred CCCcCeEEECCCCCEEEEEECCEEEEEEEEeCC-CCc-eeec--ccEEeecccCCccccceEecCC-E-EEEEecCCCCc
Confidence 45699999999999998875577777 3322 222 2221 111222 233346889999998 5 44655555444
Q ss_pred EEEcc
Q 011368 280 LVDMR 284 (487)
Q Consensus 280 iwd~~ 284 (487)
+|.+.
T Consensus 521 v~~v~ 525 (591)
T PRK13616 521 VWYVN 525 (591)
T ss_pred eEEEe
Confidence 55443
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.76 E-value=0.0061 Score=37.22 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=28.4
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEee
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~ 62 (487)
...|.+++|+|...+||.|..+|.|.|+.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999983
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.04 Score=51.69 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=73.6
Q ss_pred eeEEEeCCCCC-------EEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368 207 INSISNNSDCE-------TFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277 (487)
Q Consensus 207 v~~i~~s~~~~-------~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 277 (487)
|+-+.+.|+.+ .-+.| +|..|.-||.+-.+. .+.....+ .+.. ...-.|.+-..+| +|++||.+|.
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k--qy~~-k~nFsc~aTT~sG--~IvvgS~~Gd 452 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK--QYST-KNNFSCFATTESG--YIVVGSLKGD 452 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc--cccc-ccccceeeecCCc--eEEEeecCCc
Confidence 55555555422 22447 899999999986554 22221111 1111 1234566666665 8999999999
Q ss_pred EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368 278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 342 (487)
Q Consensus 278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~ 342 (487)
||+||- .+.... .. +++...+|.-|..+.+|++|++..+..+.+-++.
T Consensus 453 IRLYdr-i~~~AK---TA-------------lPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 453 IRLYDR-IGRRAK---TA-------------LPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred EEeehh-hhhhhh---hc-------------ccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 999997 332110 12 3334578999999999999998877788887764
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.63 E-value=0.48 Score=42.54 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=81.1
Q ss_pred CCCEEEEecCCeEEEEEccCCCcee-EEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccc
Q 011368 215 DCETFVSADDLRINLWNLEISDQCF-NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 293 (487)
Q Consensus 215 ~~~~l~s~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 293 (487)
....|+++...+|.+|......... ..+ .++ .....+.+++|.+ +.++.|..++ ..+.|+.++...
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~----ke~-~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~---- 170 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFSKLL----KEI-SLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPS---- 170 (275)
T ss_pred cceEEEEEECCEEEEEEEECCccccccee----EEE-EcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCce----
Confidence 4455666666699999887532211 110 011 1236788999984 5677777554 788899876532
Q ss_pred eeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee--eeecccccccccccccCCCCcc
Q 011368 294 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIF 371 (487)
Q Consensus 294 ~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 371 (487)
..+.. ...............++..+.. +++++|++-+ ..-.+.|.. +.+.+ .+.....+
T Consensus 171 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~-~~g~fv~~~--G~~~r~~~i~W~~~p-------------- 231 (275)
T PF00780_consen 171 ELLDP-SDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD-NIGVFVNKN--GEPSRKSTIQWSSAP-------------- 231 (275)
T ss_pred EEeCc-cCCcchhhhcccCCCceEEEEe-CCceEEEEec-ceEEEEcCC--CCcCcccEEEcCCch--------------
Confidence 22211 0000000000011123333333 3456776544 333344443 33322 33333322
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368 372 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 411 (487)
Q Consensus 372 ~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 411 (487)
.++++. ..||++.+.+ .|.||++.++ ...+++..
T Consensus 232 --~~~~~~--~pyli~~~~~-~iEV~~~~~~-~lvQ~i~~ 265 (275)
T PF00780_consen 232 --QSVAYS--SPYLIAFSSN-SIEVRSLETG-ELVQTIPL 265 (275)
T ss_pred --hEEEEE--CCEEEEECCC-EEEEEECcCC-cEEEEEEC
Confidence 255653 4588776664 5999999998 44555543
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.49 Score=41.45 Aligned_cols=184 Identities=11% Similarity=0.153 Sum_probs=111.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+.++.| +|+.+.|++......-.++=-.+|+.+....
T Consensus 86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiP--------------------------------------- 124 (316)
T COG3204 86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIP--------------------------------------- 124 (316)
T ss_pred ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEec---------------------------------------
Confidence 56999999 5777788888777777777666676655421
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEee--cCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
+.+ -.....|.+..++++.++- .++.+.+..+........... ++.......+.....++|+|.. ..|.
T Consensus 125 ------L~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~ 196 (316)
T COG3204 125 ------LTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLF 196 (316)
T ss_pred ------ccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEE
Confidence 122 3334567777778888887 999999998885543332211 1112222235677899999998 8888
Q ss_pred EEeCCCeEEEEEccCCccccccceeeccccc-ccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEEEeCCCCCce
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~iwd~~~~~~~ 347 (487)
.+-+-.-+.||...... ..+..|.. .+.... .-.-..|.++.|++....|++ +. ++.+.-.|.. +.+
T Consensus 197 ~aKEr~P~~I~~~~~~~------~~l~~~~~~~~~~~~--~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~ 266 (316)
T COG3204 197 VAKERNPIGIFEVTQSP------SSLSVHASLDPTADR--DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEV 266 (316)
T ss_pred EEEccCCcEEEEEecCC------cccccccccCccccc--ceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCe
Confidence 88877777887766443 22222110 000000 001235778888875554444 43 3777777775 555
Q ss_pred eeeeecccc
Q 011368 348 VATFKIHEH 356 (487)
Q Consensus 348 ~~~~~~~~~ 356 (487)
+..+..+.+
T Consensus 267 ~~~lsL~~g 275 (316)
T COG3204 267 IELLSLTKG 275 (316)
T ss_pred eeeEEeccC
Confidence 665554443
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.51 E-value=0.65 Score=46.43 Aligned_cols=125 Identities=11% Similarity=0.099 Sum_probs=64.8
Q ss_pred eeEEEeCCCCCEEEEe-cC-CeEEEEEccCCCceeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEEEeCCCeEEE---
Q 011368 207 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL--- 280 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i--- 280 (487)
...-.|+|+|+.|++. +. ..+++.+.....+.. .+........ .....|..+.|+|+| ..++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~-~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA-RTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEE-EEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 7788899998888776 32 233444333222221 1111100111 234579999999999 7777765 466666
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCc
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST 346 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~ 346 (487)
-....+.......+.+. .+....+..+.|..++.+++...++.-.+|.+.-++.
T Consensus 476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence 33233321100001111 1112346789999999866544444344555544343
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.8 Score=43.34 Aligned_cols=209 Identities=10% Similarity=0.066 Sum_probs=127.8
Q ss_pred EEEEEEcCCCCEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 35 VSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 35 V~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
-..+++++.++.+ ++...++.|.+.|..+.+.. .....+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------------------~~~~vG-------------- 115 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------------------GSIPVG-------------- 115 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------------------eEeeec--------------
Confidence 3467888888744 44445688999996555431 111111
Q ss_pred cceeEEEEEecCCCcEEEEEeC---CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
.....+++ +++++.+..+.. ++++.+.|-.++......
T Consensus 116 ~~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~------------------------------------- 156 (381)
T COG3391 116 LGPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATI------------------------------------- 156 (381)
T ss_pred cCCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEE-------------------------------------
Confidence 23466788 577766666543 678888887777655431
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
..+. .+ ..++++|+|+.++.+ .++.|.+.|.... ...+ .. ......-......+.++|+| ..
T Consensus 157 ---------~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~--~~-~~~~~~~~~~P~~i~v~~~g-~~ 220 (381)
T COG3391 157 ---------PVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVR--GS-VGSLVGVGTGPAGIAVDPDG-NR 220 (381)
T ss_pred ---------ecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceec--cc-cccccccCCCCceEEECCCC-CE
Confidence 1222 23 789999999987776 6999999997632 2221 00 00011222334778999999 65
Q ss_pred EEEEeCC---CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCC
Q 011368 269 LAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRM 343 (487)
Q Consensus 269 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~ 343 (487)
+.+.... +.+...|..++.... ..... +-. ....+..+|+|.++.+.. . +.+.+-|..+
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~---~~~~~------------~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTA---TDLPV------------GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEE---ecccc------------ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 5554443 589999988875431 00111 001 346688999999988874 3 8899999876
Q ss_pred CCceeeeeeccc
Q 011368 344 DSTPVATFKIHE 355 (487)
Q Consensus 344 ~~~~~~~~~~~~ 355 (487)
......+....
T Consensus 285 -~~v~~~~~~~~ 295 (381)
T COG3391 285 -DRVVKTGPTGN 295 (381)
T ss_pred -Cceeeeecccc
Confidence 55555444333
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.47 E-value=0.61 Score=42.05 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=62.8
Q ss_pred ccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEE
Q 011368 201 HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 280 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 280 (487)
.....+|..|.|.|++.+.+.+..+.|+.=+.......... ...........+..++|.+++ ...++|+ .|.+ +
T Consensus 183 r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~ 256 (302)
T PF14870_consen 183 RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-L 256 (302)
T ss_dssp --SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-E
T ss_pred cCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-E
Confidence 34567899999999998888778899988772212222111 001122233458999999887 6666555 4433 4
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEE
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 339 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iw 339 (487)
.....++... .... .......+..|.|.++.+-++.|.+|.|--|
T Consensus 257 ~S~DgGktW~----~~~~----------~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 257 VSTDGGKTWQ----KDRV----------GENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EESSTTSS-E----E-GG----------GTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred EeCCCCccce----ECcc----------ccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 4555654331 1110 0011356889999877788888988887655
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.38 E-value=0.014 Score=35.67 Aligned_cols=32 Identities=19% Similarity=0.596 Sum_probs=27.7
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD 146 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~ 146 (487)
...|..++|+ |..++||.+..+|.|.+++++.
T Consensus 11 ~~~v~~~~w~--P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWC--PTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEEC--CCCCEEEEEECCCeEEEEECCC
Confidence 3779999995 6778999999999999999943
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.029 Score=57.05 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=74.5
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~ 345 (487)
..++.|+..|.+...|+...-.. ..+.... .++|++++|+.+|..++.| .+|.|.+||+.. +
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v--------------~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP--LHQNERV--------------QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch--hhcCCcc--------------CCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence 57889999999999888764210 0011111 4789999999999999998 569999999987 7
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
++++.+..+..+.. ++..+.+..++..++++...|. +|.+.
T Consensus 163 k~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 163 KILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 88888877666432 2235666667777888877776 56654
No 380
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.17 E-value=0.72 Score=39.53 Aligned_cols=106 Identities=10% Similarity=0.071 Sum_probs=69.7
Q ss_pred CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (487)
Q Consensus 44 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~ 123 (487)
..+++.|+..+.+.--|..+++.. |......+|.+-+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~----------------------------------------We~ilg~RiE~sa~v- 61 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI----------------------------------------WEAILGVRIECSAIV- 61 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE----------------------------------------eehhhCceeeeeeEE-
Confidence 467888888888888888777542 111112445554442
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
-|++++.|+..|.+++.++.+|....... ...
T Consensus 62 --vgdfVV~GCy~g~lYfl~~~tGs~~w~f~----------------------------------------------~~~ 93 (354)
T KOG4649|consen 62 --VGDFVVLGCYSGGLYFLCVKTGSQIWNFV----------------------------------------------ILE 93 (354)
T ss_pred --ECCEEEEEEccCcEEEEEecchhheeeee----------------------------------------------ehh
Confidence 26789999999999999999985433210 011
Q ss_pred CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCcee
Q 011368 204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 239 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~ 239 (487)
.-.+ .....+++..|..+ .|++.+..|.++.+...
T Consensus 94 ~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 94 TVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred hhcc-ceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 1111 22346789999999 99999999998555433
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=1.1 Score=40.74 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=58.7
Q ss_pred cceeEEEEcCCCCEEEEEeC--CeEEEEeCCC-C----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE
Q 011368 314 ASISDIKFANDGQHLLSRDY--MNLKLWDIRM-D----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 386 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 386 (487)
..-+.++||||++.|..++. +.|.-|++.. . ++............+ =.++...+|.+.+
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P--------------DG~~vDadG~lw~ 228 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP--------------DGMAVDADGNLWV 228 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC--------------CceEEeCCCCEEE
Confidence 34578999999998888753 8888887752 1 111111111111110 1688888998886
Q ss_pred EEcCCC-cEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 387 TGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 387 sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
++..+| .|.+|+.. + .....+.-....+.+++|.-
T Consensus 229 ~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 229 AAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred ecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeC
Confidence 555554 89999987 5 44566666656666666664
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.92 E-value=2.4 Score=43.56 Aligned_cols=135 Identities=8% Similarity=0.071 Sum_probs=78.6
Q ss_pred cEEEEEEecCCCCEEEEEeC----------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368 255 VITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 324 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~ 324 (487)
.+.++.|..+...++++|.. .|.|.++.......+ +....+ .-.+.+.++..- +
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L----~~v~e~-----------~v~Gav~aL~~f-n 839 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL----ELVAET-----------VVKGAVYALVEF-N 839 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce----eeeeee-----------eeccceeehhhh-C
Confidence 45556687663278888753 477888877662211 111110 002455555432 5
Q ss_pred CCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC-
Q 011368 325 GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS- 403 (487)
Q Consensus 325 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~- 403 (487)
|+++|+-. ..|++|++.. .+.++.-..+...+ ..+...-.|..|++|.--+++.+-..+..+
T Consensus 840 gkllA~In-~~vrLye~t~-~~eLr~e~~~~~~~---------------~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg 902 (1096)
T KOG1897|consen 840 GKLLAGIN-QSVRLYEWTT-ERELRIECNISNPI---------------IALDLQVKGDEIAVGDLMRSITLLQYKGDEG 902 (1096)
T ss_pred CeEEEecC-cEEEEEEccc-cceehhhhcccCCe---------------EEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence 66666533 6899999976 54454444444432 367777789999999988888776666543
Q ss_pred -ceeEEEeccCCccccceEe
Q 011368 404 -AGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 404 -~~~~~~~~~~~~v~~~~~~ 422 (487)
.....-..+..+..++.+.
T Consensus 903 ~f~evArD~~p~Wmtaveil 922 (1096)
T KOG1897|consen 903 NFEEVARDYNPNWMTAVEIL 922 (1096)
T ss_pred ceEEeehhhCccceeeEEEe
Confidence 3333334455555555554
No 383
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.87 E-value=1.9 Score=41.78 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=44.3
Q ss_pred EEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCC
Q 011368 209 SISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 286 (487)
Q Consensus 209 ~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~ 286 (487)
.+.|+|....|+.- .|-.| ++++......++. + + ...+.|.|.+|.+||.+++++.+..=.-.+||-.++
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cccccCCCceEEEEecCceeE-eeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 46699988887774 44433 5566543333321 1 2 245679999999999444444455556788987665
Q ss_pred c
Q 011368 287 A 287 (487)
Q Consensus 287 ~ 287 (487)
.
T Consensus 189 t 189 (671)
T PF15390_consen 189 T 189 (671)
T ss_pred h
Confidence 3
No 384
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.82 E-value=1.1 Score=38.55 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=48.1
Q ss_pred CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEE
Q 011368 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (487)
Q Consensus 43 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~ 122 (487)
-|++++.|++.|.+++.++.++.+. -.+..- +.|.+-+-.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~---------------------------w~f~~~-------------~~vk~~a~~ 101 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQI---------------------------WNFVIL-------------ETVKVRAQC 101 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhhe---------------------------eeeeeh-------------hhhccceEE
Confidence 4678899999999999999998642 111111 223332222
Q ss_pred ecCCCcEEEEEeCCCcEEEEEccccceeE
Q 011368 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKK 151 (487)
Q Consensus 123 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 151 (487)
.+++.++..++.|++....|..+.....
T Consensus 102 -d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 102 -DFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred -cCCCceEEEecCCCcEEEecccccceEE
Confidence 5788999999999999999998766543
No 385
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.71 E-value=0.36 Score=46.41 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=72.4
Q ss_pred cCCCceeEEEeCCC----C-CEEEEecCCeEEEEEccCCCceeEEeecCC-CCC-CCCCCcEEEEEEecCCCCEEEEEeC
Q 011368 202 AHDFNINSISNNSD----C-ETFVSADDLRINLWNLEISDQCFNIVDMKP-SNM-DDLTEVITSAEFHPIYCNLLAYSSS 274 (487)
Q Consensus 202 ~~~~~v~~i~~s~~----~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~-~~~-~~~~~~v~~v~~~p~~~~~l~~~~~ 274 (487)
+.-..|..+.|.|- . .+||.-....|.+|.+.........+-+.+ ..+ +...--...+.|+|.. ..|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEec
Confidence 45566899999883 3 355555888999999873211100000000 000 0011112457799997 77777766
Q ss_pred CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCC
Q 011368 275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR 342 (487)
Q Consensus 275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~ 342 (487)
...-.+++++...... ...++. .+-|.|.+|.+||+.|+.+- .=.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srV--kaDi~~--------------~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRV--KADIKT--------------SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceE--EEeccC--------------CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 6555566666433210 012333 57899999999999888763 3556788854
No 386
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.62 E-value=1.7 Score=39.46 Aligned_cols=129 Identities=11% Similarity=0.096 Sum_probs=76.6
Q ss_pred CceeEEEeCCCCCEEEEe-c---------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368 205 FNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 274 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 274 (487)
...+.+...|+|.+.++. . ...=.+|.+...+...++ +..+-..-+.++|||++ +.|+.+..
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-------ecCcEEecCceEECCCC-CEEEEEeC
Confidence 456677888888877776 4 111144544422333332 12333445789999999 66666655
Q ss_pred -CCeEEEEEccC--CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCCceee
Q 011368 275 -RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA 349 (487)
Q Consensus 275 -dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~~~~~ 349 (487)
.+.|.-|++.. +..-......+ +....+..-.++...+|.+-+++. . +.|.+|+.. ++.+.
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~------------~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~ 248 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVD------------FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLG 248 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEE------------ccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEE
Confidence 57888887763 21111000111 112245667788888888776543 3 499999985 78888
Q ss_pred eeeccc
Q 011368 350 TFKIHE 355 (487)
Q Consensus 350 ~~~~~~ 355 (487)
.+..+.
T Consensus 249 ~i~lP~ 254 (307)
T COG3386 249 EIKLPV 254 (307)
T ss_pred EEECCC
Confidence 877764
No 387
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.61 E-value=1.6 Score=41.90 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=38.7
Q ss_pred CCCceeEEEeCCCCCEEEEec-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 203 HDFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
.-..-+.|+|.||+++|++-. .|.|++++..... ...+..++......-......|+++|+
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCC
Confidence 345578999999998888885 7999999765322 222211111111112567899999987
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.44 E-value=0.5 Score=41.74 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=82.9
Q ss_pred ceeEEEEcCCCCEEEEEe--C--CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368 315 SISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 390 (487)
Q Consensus 315 ~v~~v~~s~~~~~l~s~~--d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~ 390 (487)
.+.+.+++++++.++.-. + ..++++... +.....+.+..- +...|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l-----------------~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSL-----------------TRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCcc-----------------ccccccCCCCEEEEEcC
Confidence 688999999999887644 3 566666543 333332333321 47899999888877777
Q ss_pred CCcEEEEE-eCCCCceeEEEeccCC--ccccceEeeCCccccccccceeeeccc--ceecC------CCCC---cc----
Q 011368 391 SNLLRIFS-HGVGSAGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYR--QAHEN------SSSG---HH---- 452 (487)
Q Consensus 391 dg~i~iwd-~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~g~~~--~~~~w------~~~~---~~---- 452 (487)
+...+++. ..++......+..... .|..+.++| +|.. ++.-..+ +.++| .... .+
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp--DG~R-----vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP--DGTR-----VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECC--CCcE-----EEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 77777774 3444343444443322 788888888 5554 3333222 22555 1111 11
Q ss_pred ccccccCCCeEEEEEcCCCCEEEEecC
Q 011368 453 ELSYNLSSKLLHLAWHPTTNLIACANG 479 (487)
Q Consensus 453 ~~~~~~~~~v~~~~~spd~~~la~~s~ 479 (487)
.........+++++|.+++.+++.+..
T Consensus 159 ~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred EecccccCcceeeeecCCCEEEEEeCC
Confidence 111133468899999999998887663
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.43 E-value=0.25 Score=48.93 Aligned_cols=31 Identities=16% Similarity=0.462 Sum_probs=28.4
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~ 144 (487)
+.|..+.|...++++.+++.+..+.|.++.-
T Consensus 73 ~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 73 DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 7899999999999999999999999999854
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.17 Score=51.94 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=52.0
Q ss_pred cCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEE
Q 011368 202 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 280 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 280 (487)
.-.++|++++|+.+|+.++.| .+|.|.+||+. .++..+.++.. ......|-.+.+..++ ..++++...|. +
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-~~k~l~~i~e~----~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-RAKILKVITEH----GAPVTGVIFVGRTSQN-SKLLTSDTGGS--F 199 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEcc-CCcceeeeeec----CCccceEEEEEEeCCC-cEEEEccCCCc--e
Confidence 446889999999999999999 99999999999 44555544221 1112234445555666 67777777775 6
Q ss_pred EEcc
Q 011368 281 VDMR 284 (487)
Q Consensus 281 wd~~ 284 (487)
|.+.
T Consensus 200 ~~lv 203 (1206)
T KOG2079|consen 200 WKLV 203 (1206)
T ss_pred EEEE
Confidence 6554
No 391
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.18 E-value=1.3 Score=41.78 Aligned_cols=111 Identities=12% Similarity=0.057 Sum_probs=56.4
Q ss_pred CCceeEEEeCCCCCEEEEe-cC------------CeEEEEEccCC-Cce--eEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 204 DFNINSISNNSDCETFVSA-DD------------LRINLWNLEIS-DQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-~d------------~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
-.....|+|.++|+++++. .+ ..|.+++-..+ ++. ..++ .........+++.+++
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-------a~~l~~p~Gi~~~~~G-- 83 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-------AEELSMVTGLAVAVGG-- 83 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-------ecCCCCccceeEecCC--
Confidence 3456789999999988874 21 26766654322 221 1121 1122345788888886
Q ss_pred EEEEEeCCCeEEEEEccCCcccc-ccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
|++++.....++.|........ .....+.. .. .. ...+......++|.|||.+.++
T Consensus 84 -lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~-~~-~~----~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 84 -VYVATPPDILFLRDKDGDDKADGEREVLLSG-FG-GQ----INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred -EEEeCCCeEEEEeCCCCCCCCCCccEEEEEc-cC-CC----CCcccccccCceECCCCCEEEe
Confidence 4444444433444554322111 11111121 00 00 0001345788999999987665
No 392
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.11 E-value=3.3 Score=39.79 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=66.1
Q ss_pred eeEEEeCCCCCEEEEe--cCC----eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC----
Q 011368 207 INSISNNSDCETFVSA--DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---- 276 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---- 276 (487)
+...+++|++++++.+ ..| .++++|++++......+ ... ....+.|.+++ +.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------~~~--~~~~~~W~~d~-~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------ENP--KFSSVSWSDDG-KGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------EEE--ESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------ccc--ccceEEEeCCC-CEEEEEEeCccccc
Confidence 4467889999999886 333 59999999653322211 111 11239999998 6665554322
Q ss_pred -------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e---C-CeEEEEeCCC
Q 011368 277 -------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---Y-MNLKLWDIRM 343 (487)
Q Consensus 277 -------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~---d-~~i~iwd~~~ 343 (487)
.|..|.+.+...- -..+|+.. ........+..++|+++|+.. . + ..+++.|+..
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~--d~lvfe~~-----------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSE--DELVFEEP-----------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG---EEEEC-T-----------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred ccCCCCcEEEEEECCCChHh--CeeEEeec-----------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3666776654321 11344430 001125678899999998853 2 3 4688888875
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.56 Score=48.67 Aligned_cols=154 Identities=10% Similarity=-0.007 Sum_probs=92.9
Q ss_pred CCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeec--C-CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368 204 DFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDM--K-PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~--~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 277 (487)
.-.+..+...+|+...++. .+-.|..||+++-......-.. + ............++.|+|.-+...++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 4456666667777666553 4557889998843221100000 0 00112223445788999987677888889999
Q ss_pred EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccc
Q 011368 278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH 356 (487)
Q Consensus 278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~ 356 (487)
|++..+...... ...+.. ....++++|+|.|+.++.|.. |++.-|... ......+.....
T Consensus 180 l~V~~~~~~~~~---v~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~ 240 (1405)
T KOG3630|consen 180 LRVKSTKQLAQN---VTSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPV 240 (1405)
T ss_pred hhhhhhhhhhhh---hcccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCc
Confidence 998876653211 122222 457899999999999999975 999888764 233333333221
Q ss_pred cccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 387 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 387 (487)
. ..+.|.+++|-....++++
T Consensus 241 ~-----------e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 241 E-----------ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred C-----------CCcceeEEEEecceeEEEE
Confidence 1 1223468888777666664
No 394
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.11 E-value=2.8 Score=38.83 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFE 60 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~ 60 (487)
..+.|+|.|||+++++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 4679999999987775 5699999999
No 395
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.10 E-value=4.7 Score=41.43 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=55.0
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCC----------Cc--eeEEeecCCCCC-CCCCCcEEEEEEecCC--CCE
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEIS----------DQ--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CNL 268 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~v~~v~~~p~~--~~~ 268 (487)
.-.|..+..+|+|++++......|.|..+... .. ..+.+.+...-+ ......|..+.|+|.+ ...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35689999999999998874455555554321 11 111221111111 2344678999999973 278
Q ss_pred EEEEeCCCeEEEEEccCCc
Q 011368 269 LAYSSSRGFVRLVDMRQSA 287 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~ 287 (487)
|++-..|+.+|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999997644
No 396
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.07 E-value=3.1 Score=42.00 Aligned_cols=76 Identities=9% Similarity=0.092 Sum_probs=51.7
Q ss_pred CCCceeEEEeC--CCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC--CC---EEEEEeC
Q 011368 203 HDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSS 274 (487)
Q Consensus 203 ~~~~v~~i~~s--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~---~l~~~~~ 274 (487)
-...++++++. ...++||++ ....|.+|-.......... ..-..+...|.+|+|-++. +. .+++++-
T Consensus 162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 45578999998 788999999 7788888866532111110 0111355668899997653 12 7778888
Q ss_pred CCeEEEEEc
Q 011368 275 RGFVRLVDM 283 (487)
Q Consensus 275 dg~i~iwd~ 283 (487)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999999888
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.97 E-value=2.4 Score=37.45 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=43.3
Q ss_pred ceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCce-eEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368 206 NINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 276 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 276 (487)
.|..+.++|||..++.- .++.|.+--+.....- ...+.............+..++|.+++ .+++.+...+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~ 187 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSAG 187 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCCCC
Confidence 89999999999998774 3677877765432221 111111111112334678999999998 6666655443
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.90 E-value=0.96 Score=46.21 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=57.6
Q ss_pred cceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccc-----ccccccccCCCCcceeeEEEEcCC---CCEE
Q 011368 314 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL-----RPKLCDLYNNDSIFDKFECSVSGD---GLHF 385 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~d---~~~l 385 (487)
-.|..|.++|+|.+|+..+...|.|-.+......-..+.+.... .+.-..++.......|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 46889999999999997665566666553211000111111000 000011222222234578999995 5899
Q ss_pred EEEcCCCcEEEEEeCCCCceeEEEe
Q 011368 386 ATGSYSNLLRIFSHGVGSAGGITVE 410 (487)
Q Consensus 386 ~sg~~dg~i~iwd~~~~~~~~~~~~ 410 (487)
+.-+.|+++|+||+.......+.+.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999999987655444444
No 399
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.88 E-value=3.2 Score=38.41 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 148 (487)
....|+|. |+|.+++ +...|.|++++ ..+.
T Consensus 3 ~P~~~a~~--pdG~l~v-~e~~G~i~~~~-~~g~ 32 (331)
T PF07995_consen 3 NPRSMAFL--PDGRLLV-AERSGRIWVVD-KDGS 32 (331)
T ss_dssp SEEEEEEE--TTSCEEE-EETTTEEEEEE-TTTE
T ss_pred CceEEEEe--CCCcEEE-EeCCceEEEEe-CCCc
Confidence 35789995 6777655 45699999999 4443
No 400
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.85 E-value=0.17 Score=29.99 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=24.4
Q ss_pred ceeEEEEcCCC---CEEEEEeC-CeEEEEeCCC
Q 011368 315 SISDIKFANDG---QHLLSRDY-MNLKLWDIRM 343 (487)
Q Consensus 315 ~v~~v~~s~~~---~~l~s~~d-~~i~iwd~~~ 343 (487)
.|.++.|||+. .+|+.+.+ +.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68999999754 48888877 9999999984
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.84 E-value=1.3 Score=44.09 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=71.1
Q ss_pred eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEeCCCeEEEEEc
Q 011368 207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM 283 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~iwd~ 283 (487)
..-+.-+.-++..++- ....+.|||.+......+ ..+ ...+.|..+.|. |++ +.+++.+....|.+|.-
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~------~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE------ESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe------eee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence 3444444445555555 677899999984442222 122 346779999986 778 88888889999999854
Q ss_pred cCCc-----cccccceeecccccccCccccccccc-cceeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368 284 RQSA-----LCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWDIR 342 (487)
Q Consensus 284 ~~~~-----~~~~~~~~~~~h~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~s~~d~~i~iwd~~ 342 (487)
.... .....++.+. +..|+ .+|.+..|.++|.+++ |+.+.+.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~-----------i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKID-----------ISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEE-----------eecCCCCCccceeEecCCeEEE-EeCCEEEEECCC
Confidence 3211 0001111111 12222 5789999999996555 444788898754
No 402
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.80 E-value=4.6 Score=39.80 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=21.6
Q ss_pred cEEEEEeCCCcEEEEEccccceeEee
Q 011368 128 SMFILSTNDKTIKLWKVRDQKVKKIK 153 (487)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~~~~~ 153 (487)
..++.++.++.|.-+|.++++.+...
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeee
Confidence 57888889999999999999876553
No 403
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.78 E-value=0.13 Score=30.41 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=27.2
Q ss_pred CcEEEEEEecCCC--CEEEEEeCCCeEEEEEccCC
Q 011368 254 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQS 286 (487)
Q Consensus 254 ~~v~~v~~~p~~~--~~l~~~~~dg~i~iwd~~~~ 286 (487)
+.+.++.|+|... .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3589999998763 58888888899999999963
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.67 E-value=2.8 Score=36.71 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=85.9
Q ss_pred CceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 205 FNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
.-...+.|..++.++-++ ....|+.+|+.++ +......++. .-.-..++...+ .+....=.++...+|
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg-~~~~~~~l~~------~~FgEGit~~~d--~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG-KVLQSVPLPP------RYFGEGITILGD--KLYQLTWKEGTGFVY 115 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS-SEEEEEE-TT------T--EEEEEEETT--EEEEEESSSSEEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCC-cEEEEEECCc------cccceeEEEECC--EEEEEEecCCeEEEE
Confidence 345577776677777664 4558999999954 4443332221 111233444433 455555568899999
Q ss_pred EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccc
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK 360 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 360 (487)
|..+-+.. ..+.- .+.=+.++ .|++.|+..+ ...|+++|..+ .+....+.......+
T Consensus 116 d~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~p- 173 (264)
T PF05096_consen 116 DPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRP- 173 (264)
T ss_dssp ETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE-
T ss_pred ccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEE-
Confidence 99876543 33333 22335555 4566665543 48999999876 666666665443221
Q ss_pred cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+...+.+.+- +|...|=.=....|...|..+|
T Consensus 174 ---------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 174 ---------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp ------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred ---------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 1122466665 5655554445557777788777
No 405
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.42 E-value=0.027 Score=56.20 Aligned_cols=128 Identities=10% Similarity=0.041 Sum_probs=69.0
Q ss_pred eeEEEeCC---CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE-----------EecCCCCEEEE
Q 011368 207 INSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-----------FHPIYCNLLAY 271 (487)
Q Consensus 207 v~~i~~s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-----------~~p~~~~~l~~ 271 (487)
+.-+.|.| +.-++..+ .++.|++..+++....+ +.+|...+..++ .+||| ..++.
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l---------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~ 252 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSL---------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAW 252 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHHHH---------HHhcCCCcccHHHHhhchhhheeeCCCC-cEEEE
Confidence 34555554 66677777 88898887776433311 223544433332 68999 99999
Q ss_pred EeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCcee
Q 011368 272 SSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV 348 (487)
Q Consensus 272 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~ 348 (487)
+..||.++.|.+.- ++........++.|...+..-..+-.|...+..+-+ -.++++++| ..+++|.-.. .+++
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~---w~~~Itttd~nre~k~w~~a~-w~Cl 328 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGK---WVLRITTTDVNREEKFWAEAP-WQCL 328 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccce---eEEEEecccCCcceeEeeccc-hhhh
Confidence 99999999887652 332223335555542222111111111111111111 134556665 6789998654 4444
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.14 E-value=0.25 Score=41.38 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=16.6
Q ss_pred CcEEEEEeCCCcEEEEEcc
Q 011368 127 GSMFILSTNDKTIKLWKVR 145 (487)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~ 145 (487)
+..++.|+.+|.|.+|+..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n 88 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWN 88 (238)
T ss_pred CceEEeecccceEEEecCC
Confidence 4578999999999999887
No 407
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=7.3 Score=39.09 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=32.5
Q ss_pred cceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccc
Q 011368 314 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 356 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~ 356 (487)
+.+..+..||+.++|+--. .|.|.+-+... .+.+..+.....
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~~~~ 259 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNCTDH 259 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCCCCC
Confidence 5788999999999999764 49999998876 666766664433
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=0.96 Score=47.06 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=67.6
Q ss_pred CCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 204 DFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 204 ~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
.....++.|+|.-. ..+.+ .|+.|++..+......... .......++++|+|.| +.++.|-..|++.-|
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s--------~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS--------FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQY 225 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc--------cCcccceeeEEecccc-ceeeEecCCCeEEEe
Confidence 34456888988633 33445 8999988877633322211 1234568999999999 999999999999888
Q ss_pred EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
...-... +.+.. ++... ...|.+|+|-....++++
T Consensus 226 ~P~leik-----~~ip~---Pp~~e------~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 226 EPSLEIK-----SEIPE---PPVEE------NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eccccee-----ecccC---CCcCC------CcceeEEEEecceeEEEE
Confidence 6543211 11111 11111 368999999988888875
No 409
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.87 E-value=5.3 Score=36.88 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=62.7
Q ss_pred CCceeEEEeCC-CCCEEEEecCCe------EEEEEccCCC---ceeEEeecCCCCCCCCC--------CcEEEEEEecCC
Q 011368 204 DFNINSISNNS-DCETFVSADDLR------INLWNLEISD---QCFNIVDMKPSNMDDLT--------EVITSAEFHPIY 265 (487)
Q Consensus 204 ~~~v~~i~~s~-~~~~l~s~~d~~------i~iwd~~~~~---~~~~~~~~~~~~~~~~~--------~~v~~v~~~p~~ 265 (487)
-+.+..+.+.+ ++.+++.++++. +...++.... ..+.... ...+.... .-.-++++.++|
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD--MIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc--ceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 45678889985 555555567666 6666655311 1111111 01111111 134577887777
Q ss_pred CCEEEEEeCC------CeEEEEEccCCccccccceeeccc-ccccCcc-ccccccccceeEEEEcCCCCEEEE
Q 011368 266 CNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDA-AESHGSK-SFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 266 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h-~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
.++++.-.+ ..|..++.. ++.. ..+..- ...+... ..-...+..+.+|+++|+|+.|++
T Consensus 97 -~~~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 97 -SFWISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred -CEEEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 777776667 778888866 4432 222110 0000000 011123568999999999995554
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.82 E-value=5 Score=40.59 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=70.6
Q ss_pred CceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCC-----------ceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCE
Q 011368 205 FNINSISNNS--DCETFVSA-DDLRINLWNLEISD-----------QCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNL 268 (487)
Q Consensus 205 ~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~ 268 (487)
..|+.|.... +...|+.| +||.|.+|.++.-- .......++|.-.......+++++++ ... .+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eE
Confidence 3455555433 55677778 99999999764210 00000111222122234578999998 776 88
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-----C-EEEEEe-CCeEEEEeC
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----Q-HLLSRD-YMNLKLWDI 341 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-----~-~l~s~~-d~~i~iwd~ 341 (487)
||+++....|.||-............ .| .|...|.+|.|-++. . +|++++ .|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~---s~-----------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVP---SH-----------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEecccccccccc---cc-----------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 89888888888886655211100000 10 134578889886543 2 444455 388888877
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=93.80 E-value=5.6 Score=36.88 Aligned_cols=119 Identities=8% Similarity=-0.018 Sum_probs=69.6
Q ss_pred cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
.-...++++.+.++++.++++..|.+.+=..+ .+...+....+ .......+..+.+.|++ ..+ .++.+|.+. .
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~~-~~G~~G~v~-~ 284 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EIW-AGGGNGTLL-V 284 (334)
T ss_pred CCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CEE-EEcCCCeEE-E
Confidence 34567899999999998888877776532233 34333321000 00112357888999886 554 455667554 3
Q ss_pred EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeC
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 341 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~ 341 (487)
....++.. ...... .+-......+.|..+++.+++|..|.|-.|+-
T Consensus 285 S~d~G~tW----~~~~~~----------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 285 SKDGGKTW----EKDPVG----------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred eCCCCCCC----eECCcC----------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 44444322 111100 00123578888888888888888899888764
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.46 E-value=4.3 Score=34.48 Aligned_cols=143 Identities=11% Similarity=0.038 Sum_probs=80.6
Q ss_pred CCceeEEEeCCCCCEEEEe-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 204 DFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
..+.++-..+|+|++++-. .| |.++.|-.. .+.-.+ ...-..-..++|+.+...+.+.-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence 4566777789999996554 33 334444333 111111 011122356889988734444555
Q ss_pred CCCeEEEEE--ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 274 SRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 274 ~dg~i~iwd--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
.+-.|.-|| +.++..... ...+......+.. ......++...+|.+.+++- .++|...|..+ ++.+.+
T Consensus 178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e 248 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFE-------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE 248 (310)
T ss_pred CceEEeeeecCCCcccccCc-ceeEEeccCCCcC-------CCCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence 677787787 666653321 1222221111100 11223455566787777764 49999999988 888888
Q ss_pred eecccccccccccccCCCCcceeeEEEEcC
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG 380 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 380 (487)
++.....+ +++||--
T Consensus 249 iklPt~qi---------------tsccFgG 263 (310)
T KOG4499|consen 249 IKLPTPQI---------------TSCCFGG 263 (310)
T ss_pred EEcCCCce---------------EEEEecC
Confidence 88775533 6888863
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.39 E-value=3.2 Score=38.97 Aligned_cols=36 Identities=8% Similarity=-0.133 Sum_probs=22.4
Q ss_pred CCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCcee
Q 011368 204 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF 239 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~ 239 (487)
..-|++|..|.|.++|..+ ..|.|+.||+.......
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 4568999999999999776 89999999998765543
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.30 E-value=6.5 Score=37.07 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.9
Q ss_pred cEEEEEEcCCCCEEEEE
Q 011368 34 IVSAIEFDKTGDYLAVG 50 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g 50 (487)
....|+|.++|+++++-
T Consensus 15 ~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCceeeECCCCCEEEEe
Confidence 46689999999987764
No 415
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.30 E-value=0.73 Score=39.56 Aligned_cols=79 Identities=9% Similarity=0.073 Sum_probs=52.4
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 340 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd 340 (487)
+...+ .++++.+.+|.+++||+.+++........... -....... ......|..+.++.+|.-+++-++|..+.|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44566 88999999999999999998754332111111 00000000 0235678999999999888887788889998
Q ss_pred CCC
Q 011368 341 IRM 343 (487)
Q Consensus 341 ~~~ 343 (487)
...
T Consensus 94 ~~L 96 (219)
T PF07569_consen 94 PDL 96 (219)
T ss_pred ccc
Confidence 764
No 416
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.25 E-value=2.7 Score=39.97 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=82.5
Q ss_pred CEEEE-EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--------CEEEEEeCCeEE
Q 011368 267 NLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--------QHLLSRDYMNLK 337 (487)
Q Consensus 267 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--------~~l~s~~d~~i~ 337 (487)
++|+. ++....+.-.|++.|+.+ ..|..| ..+ -+.|.|.. +.|+.-++..|.
T Consensus 480 sli~~dg~~~~kLykmDIErGkvv----eeW~~~--------------ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svF 540 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVV----EEWDLK--------------DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVF 540 (776)
T ss_pred ceEEecCCCcccceeeecccceee----eEeecC--------------Ccc-eeecCCchhHHhcCccceEEeecccceE
Confidence 44443 445567777788888766 667663 233 56777753 234444666666
Q ss_pred EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccc
Q 011368 338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 417 (487)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 417 (487)
-.|.+..+..+........... -- ++......+.+||+||..|-|++||.-.. .
T Consensus 541 rIDPR~~gNKi~v~esKdY~tK---------n~---Fss~~tTesGyIa~as~kGDirLyDRig~-r------------- 594 (776)
T COG5167 541 RIDPRARGNKIKVVESKDYKTK---------NK---FSSGMTTESGYIAAASRKGDIRLYDRIGK-R------------- 594 (776)
T ss_pred EecccccCCceeeeeehhcccc---------cc---ccccccccCceEEEecCCCceeeehhhcc-h-------------
Confidence 6676654544433332221100 00 12222235569999999999999996532 1
Q ss_pred cceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEE
Q 011368 418 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 484 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i 484 (487)
+-. .+.++...|..+..+.+|++|.+.|.+.+.+
T Consensus 595 AKt---------------------------------alP~lG~aIk~idvta~Gk~ilaTCk~yllL 628 (776)
T COG5167 595 AKT---------------------------------ALPGLGDAIKHIDVTANGKHILATCKNYLLL 628 (776)
T ss_pred hhh---------------------------------cCcccccceeeeEeecCCcEEEEeecceEEE
Confidence 111 1223344778888999999988888877655
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.22 E-value=0.22 Score=50.10 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=69.4
Q ss_pred cceeEEEEEec-CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..+.-|.|+|. ++..++..+-.++++++.+++......
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l----------------------------------------- 219 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSL----------------------------------------- 219 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHHHH-----------------------------------------
Confidence 44567778763 344556666688899988776543211
Q ss_pred cceeeeecccCCCceeEEE-----------eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC-cEEEE
Q 011368 193 NMATKVYPHAHDFNINSIS-----------NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-VITSA 259 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~-----------~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~v 259 (487)
+.+|...+..++ .+|||+.++.+ .||.++.|.+--.++...-. .+..+.|.+ +-.|.
T Consensus 220 -------~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rc---lhewkphd~~p~vC~ 289 (1283)
T KOG1916|consen 220 -------FRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRC---LHEWKPHDKHPRVCW 289 (1283)
T ss_pred -------HHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhh---hhccCCCCCCCceee
Confidence 133444443332 58999999999 99999999876444322111 123455652 22232
Q ss_pred EEecCC------C--CEEEEEe-CCCeEEEEEccCCc
Q 011368 260 EFHPIY------C--NLLAYSS-SRGFVRLVDMRQSA 287 (487)
Q Consensus 260 ~~~p~~------~--~~l~~~~-~dg~i~iwd~~~~~ 287 (487)
-++.+. + .++++++ .+..+++|....-+
T Consensus 290 lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 290 LCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred eeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 244221 0 2333433 35678888766543
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.11 E-value=8.4 Score=36.82 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=63.4
Q ss_pred EEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecc
Q 011368 220 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 298 (487)
Q Consensus 220 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 298 (487)
+.| .+..|.-.|.+..+..+.....+. ..+ .....|..-... -++|+++..|-|++||.-..+.. ..
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKd--Y~t-Kn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAK----ta--- 598 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKD--YKT-KNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAK----TA--- 598 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehh--ccc-cccccccccccC--ceEEEecCCCceeeehhhcchhh----hc---
Confidence 345 777777778776665444332221 111 112233333344 49999999999999986543211 11
Q ss_pred cccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368 299 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 342 (487)
Q Consensus 299 h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~ 342 (487)
+++....|..+..+.+|+++++.....+.+-|++
T Consensus 599 ----------lP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 599 ----------LPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ----------CcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2223467899999999999988766788888875
No 419
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=92.94 E-value=16 Score=39.45 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=39.3
Q ss_pred eEEEEcCCCCEEEEEeC-CeE-EEEeCCCCCceeeeeeccccccc----ccccccC------CCC-cceeeEEEEcCCCC
Q 011368 317 SDIKFANDGQHLLSRDY-MNL-KLWDIRMDSTPVATFKIHEHLRP----KLCDLYN------NDS-IFDKFECSVSGDGL 383 (487)
Q Consensus 317 ~~v~~s~~~~~l~s~~d-~~i-~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~~-~~~~~~~~~s~d~~ 383 (487)
.+++++++|.+.++-+| ..| ++-.+.+ ...+..+.+...... .-|+.++ .+. .....++|.+|||.
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~ 674 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD 674 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc
Confidence 78999999987777655 222 3333444 335666655443211 1122111 111 11235788888888
Q ss_pred EEEEEcCC
Q 011368 384 HFATGSYS 391 (487)
Q Consensus 384 ~l~sg~~d 391 (487)
.+++-..+
T Consensus 675 v~IAD~gN 682 (1899)
T KOG4659|consen 675 VIIADSGN 682 (1899)
T ss_pred EEEecCCc
Confidence 76654443
No 420
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.82 E-value=0.5 Score=39.70 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=40.8
Q ss_pred CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE-EecCCCCEEEEEeCCCeEEEEEccCCcc
Q 011368 216 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-FHPIYCNLLAYSSSRGFVRLVDMRQSAL 288 (487)
Q Consensus 216 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 288 (487)
+..+++| .+|.|++|...-.+..... .......|.++. --.++ .+..++..+|.|+.|++.-.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 5677788 9999999988733332211 111122233322 22233 5888999999999999887653
No 421
>PHA02713 hypothetical protein; Provisional
Probab=92.68 E-value=6.1 Score=39.62 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=19.1
Q ss_pred CCCEEEEEcCCC--cEEEEEeCCCCc
Q 011368 381 DGLHFATGSYSN--LLRIFSHGVGSA 404 (487)
Q Consensus 381 d~~~l~sg~~dg--~i~iwd~~~~~~ 404 (487)
+|+..++||.|| .+..||..+.+-
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 788888999888 777888877644
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.57 E-value=0.97 Score=38.79 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=52.7
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.++..+. .++.++++.+.+|.+++||+..++...... ...+ ++.. .
T Consensus 13 s~~~~l~----~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~p-------------ll~~----------------~ 58 (219)
T PF07569_consen 13 SPVSFLE----CNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAP-------------LLNS----------------S 58 (219)
T ss_pred CceEEEE----eCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHH-------------Hhcc----------------c
Confidence 4455555 357889999999999999999876532210 0000 0000 0
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEcc
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 233 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~ 233 (487)
. . .-......|..+..+.+|.-+++-.+|..+.|+.+
T Consensus 59 ~-~--~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 59 P-V--SDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred c-c--ccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 0 0 00145677888999988887776677889999887
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=13 Score=37.35 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=25.5
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 374 FECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 374 ~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
..+..||+.++|+--...|.|.+-+....
T Consensus 220 ~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred EEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 48999999999999999999999888755
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.24 E-value=6.3 Score=33.23 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=35.5
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 331 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 331 (487)
..|..+...+.|.+|++.+.. ......|.. -+.|..+.++..|+||++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~--~~~~~~F~T--------------v~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE--CPLLCTFST--------------VGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC--CceeEEEcc--------------hhheeEEEeccccceEEEE
Confidence 345444677789999998432 222355555 4789999999999999985
No 425
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.23 E-value=11 Score=36.20 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=25.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCC
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 64 (487)
-+..+.|+|.|||++|++--..|.|++++..++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 346789999999988877654699999875544
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.16 E-value=11 Score=34.05 Aligned_cols=145 Identities=13% Similarity=0.082 Sum_probs=72.3
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368 210 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 289 (487)
Q Consensus 210 i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 289 (487)
+....++..++++..|. ||.....++..+.+ ..+....+..+.-+++| .++++++....+.-||.-..
T Consensus 109 i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~--- 176 (302)
T PF14870_consen 109 ITALGDGSAELAGDRGA--IYRTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQT--- 176 (302)
T ss_dssp EEEEETTEEEEEETT----EEEESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S---
T ss_pred EEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCc---
Confidence 33333444444444454 44445466655543 23344678888899999 88888877666777875542
Q ss_pred cccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCC
Q 011368 290 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS 369 (487)
Q Consensus 290 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (487)
.+..|.. .-...|..|.|.|++.+.+.+..|.|++=+.. .....+..+..++. ..
T Consensus 177 -----~w~~~~r---------~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~---~~~~~w~~~~~~~~--------~~ 231 (302)
T PF14870_consen 177 -----TWQPHNR---------NSSRRIQSMGFSPDGNLWMLARGGQIQFSDDP---DDGETWSEPIIPIK--------TN 231 (302)
T ss_dssp -----S-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---TEEEEE---B-TTS--------S-
T ss_pred -----cceEEcc---------CccceehhceecCCCCEEEEeCCcEEEEccCC---CCccccccccCCcc--------cC
Confidence 2333211 11467999999999988777766888887722 11222222111100 01
Q ss_pred cceeeEEEEcCCCCEEEEEcCC
Q 011368 370 IFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 370 ~~~~~~~~~s~d~~~l~sg~~d 391 (487)
-+.+.+++|.+++...++|+..
T Consensus 232 ~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 232 GYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -S-EEEEEESSSS-EEEEESTT
T ss_pred ceeeEEEEecCCCCEEEEeCCc
Confidence 1123589999998887766654
No 427
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=5 Score=38.34 Aligned_cols=126 Identities=21% Similarity=0.167 Sum_probs=64.9
Q ss_pred CeEEEEeCCCCCceeeeeeccccccccc------ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRPKL------CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 407 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~ 407 (487)
..+..||-+..--.+..+++........ --.......+.|..+..++.|..++-.|.+|.+.++=.+.-+ ...
T Consensus 61 D~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-~~s 139 (741)
T KOG4460|consen 61 DELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-KNS 139 (741)
T ss_pred CEEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcC-ccc
Confidence 3788888764222333444322211100 012233345566788999999999999998866544322211 122
Q ss_pred EEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCC---CEEE-EecCCeEE
Q 011368 408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT---NLIA-CANGNSLF 483 (487)
Q Consensus 408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~---~~la-~~s~~~~~ 483 (487)
.++..+..|++..+.-. .++ .+ . ...-.+..++|||+. .+|. -.+++-+.
T Consensus 140 ~~eDgk~~v~CRt~~i~--~~~------ft-----------------s-s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviR 193 (741)
T KOG4460|consen 140 EFEDGKSTVNCRTTPVA--ERF------FT-----------------S-STSLTLKQAAWHPSSILDPHLVLLTSDNVIR 193 (741)
T ss_pred eecCCCceEEEEeeccc--cee------ec-----------------c-CCceeeeeccccCCccCCceEEEEecCcEEE
Confidence 33333333444444321 111 11 1 112256788999986 4454 55566688
Q ss_pred EEe
Q 011368 484 FHY 486 (487)
Q Consensus 484 i~~ 486 (487)
+|+
T Consensus 194 iy~ 196 (741)
T KOG4460|consen 194 IYS 196 (741)
T ss_pred EEe
Confidence 886
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.32 E-value=17 Score=34.57 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=68.2
Q ss_pred cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCce-----eEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368 202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC-----FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 276 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 276 (487)
.....+..+.+.+++..++++.+|.+..= .. .+.. +..+ ........+..+.|.+++ . ++.++..|
T Consensus 278 ~~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d-~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~-~~a~G~~G 348 (398)
T PLN00033 278 ASARRIQNMGWRADGGLWLLTRGGGLYVS-KG-TGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-E-AWAAGGSG 348 (398)
T ss_pred CCccceeeeeEcCCCCEEEEeCCceEEEe-cC-CCCcccccceeec-----ccCCCCcceEEEEEcCCC-c-EEEEECCC
Confidence 34556889999999999988877776443 33 2221 1111 111122458889999886 5 55555667
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEE
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 339 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iw 339 (487)
.+... ...++. |+.- .. -.+....++.+.|.++++.+++|.+|.|.-|
T Consensus 349 ~v~~s-~D~G~t-------W~~~-~~------~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 349 ILLRS-TDGGKS-------WKRD-KG------ADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cEEEe-CCCCcc-------eeEc-cc------cCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 65554 344432 2210 00 0111346889999988999999988887655
No 429
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.21 E-value=15 Score=33.90 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=64.4
Q ss_pred ceeEEEeCCCCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCC--------CCCCCCCcEEEEEEecCCCCEEE
Q 011368 206 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
..-+|++.+++.++++. .+ ..|..++.. +.....+.++.. .-...+....+|+++|+| +.|+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLF 162 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEE
Confidence 45678887889888888 77 888888876 333333322211 112345678999999999 7566
Q ss_pred EEeC-----CC--e-------EEEEEccCCc---cccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 271 YSSS-----RG--F-------VRLVDMRQSA---LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 271 ~~~~-----dg--~-------i~iwd~~~~~---~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
++.+ |+ . ++++...... .. ..+.-..+.+... .....+..+.+-+++++|+-
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~----~~~~y~ld~~~~~----~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPV----AEYAYPLDPPPTA----PGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccc----eEEEEeCCccccc----cCCCCceeEEEECCCcEEEE
Confidence 5543 22 1 4555443221 11 1111100000000 02467889999999998775
No 430
>PHA02713 hypothetical protein; Provisional
Probab=90.18 E-value=6 Score=39.67 Aligned_cols=65 Identities=5% Similarity=0.078 Sum_probs=34.9
Q ss_pred CCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC--eEEEEEccC
Q 011368 215 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ 285 (487)
Q Consensus 215 ~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~iwd~~~ 285 (487)
+++..+.| .+ ..+..||.++.. .+..+ ..+.........+.+ ++ .+.++|+.++ .+..||..+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~-~W~~~----~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYN-GWELI----TTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCC-CeeEc----cccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence 45666665 43 246678887411 22221 122222222222222 45 8889999888 677788777
Q ss_pred Cc
Q 011368 286 SA 287 (487)
Q Consensus 286 ~~ 287 (487)
.+
T Consensus 535 ~~ 536 (557)
T PHA02713 535 YE 536 (557)
T ss_pred cc
Confidence 54
No 431
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.17 E-value=3.2 Score=38.82 Aligned_cols=167 Identities=11% Similarity=-0.010 Sum_probs=89.5
Q ss_pred ccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeE-EeecCCCCCCC-CCCcEE-EEEEecCCCCEEEEEeCCCe
Q 011368 201 HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN-IVDMKPSNMDD-LTEVIT-SAEFHPIYCNLLAYSSSRGF 277 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~v~-~v~~~p~~~~~l~~~~~dg~ 277 (487)
..-...|..+-..|||+.+..-...++.++++.+.....+ +.+.. ++ ....|+ .+..-..| .-+++++.||.
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~ 291 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLLVVHEDGL 291 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEEEEcCCCc
Confidence 4455677788889999999887557888888874332211 11000 11 001111 11122334 77888899998
Q ss_pred EEEE-EccCCc-cccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecc
Q 011368 278 VRLV-DMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 354 (487)
Q Consensus 278 i~iw-d~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~ 354 (487)
|.-| |.+.+. ...++++.++-. ...+..+.--.+.+-+++-+ .|++.++.... .+++-.-...
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~-------------pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~ 357 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLA-------------PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAY 357 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccC-------------cccceeeccccccceEEEEcCCCceeeeeccc-Ccceehhhhh
Confidence 8877 555432 112222333220 12232222222233333333 37777766543 3333222222
Q ss_pred cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
+.. .-+++||++.++++-. .|.|+++.+++..
T Consensus 358 ~~~----------------~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 358 QAP----------------QLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred cCc----------------ceeeeCcccchheeec-CCceEEEEecCCC
Confidence 222 2689999999988543 4789999998763
No 432
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.82 E-value=23 Score=35.32 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=21.8
Q ss_pred cCCC--CEEEEEeCCCeEEEEEccCCccc
Q 011368 263 PIYC--NLLAYSSSRGFVRLVDMRQSALC 289 (487)
Q Consensus 263 p~~~--~~l~~~~~dg~i~iwd~~~~~~~ 289 (487)
.+|. ..++.+..+|.+.+.|.++++.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4552 37888999999999999999864
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.35 E-value=12 Score=35.20 Aligned_cols=131 Identities=11% Similarity=0.020 Sum_probs=77.5
Q ss_pred eeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCC
Q 011368 207 INSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 286 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~ 286 (487)
-+.+-|...++.|++...|.+.-|-+...+..+.+ .--....++|.++.|++|. +.||+--.++.|.+++....
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCC
Confidence 34455554444555447777777777644322211 0011234589999999999 99999999999999988543
Q ss_pred ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccc
Q 011368 287 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 357 (487)
Q Consensus 287 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~ 357 (487)
+........-+. -+..|....|+.+ .-+|--.+..+-+|......+.++..+.+...
T Consensus 99 ~~~l~~~~~ck~-------------k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~n 155 (657)
T KOG2377|consen 99 NSQLEYTQECKT-------------KNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLN 155 (657)
T ss_pred chhhHHHHHhcc-------------CcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccC
Confidence 322111111111 1345888899866 45555555556677665545556666655543
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=88.70 E-value=20 Score=33.23 Aligned_cols=158 Identities=10% Similarity=0.024 Sum_probs=86.9
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 283 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 283 (487)
...+.++.+.|++.+++++..|.+..- .+..+..+..+ .......++++.+.+++ ..++++ ..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccC
Confidence 456889999999888888877766532 22233333322 11234568899999988 666654 5576543233
Q ss_pred cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccccccccc
Q 011368 284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 363 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
..+.. +... ..+.. .....+.++.+.+++..++++.+|.+.. .... ++.-..........
T Consensus 243 d~G~s-------W~~~-~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~-G~tW~~~~~~~~~~----- 302 (334)
T PRK13684 243 DDLES-------WSKP-IIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDG-GKTWEKDPVGEEVP----- 302 (334)
T ss_pred CCCCc-------cccc-cCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCCC-CCCCeECCcCCCCC-----
Confidence 44432 2210 00000 0023578899999988888887776653 3322 33322222111110
Q ss_pred ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368 364 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd 398 (487)
...+.+.|..+++.++ .+..|.|.-|+
T Consensus 303 -------~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 303 -------SNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred -------cceEEEEEeCCCceEE-ECCCceEEEec
Confidence 0114677776666655 55667777665
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=11 Score=36.22 Aligned_cols=83 Identities=8% Similarity=0.135 Sum_probs=47.6
Q ss_pred cEEEEEEecCCCCEEEEEeCCCeEEEEEccC-Cc---ccccc----ceeecccccccCccccccccccceeEEEEcCCC-
Q 011368 255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SA---LCDHS----ARILRDAAESHGSKSFFTEIIASISDIKFANDG- 325 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~---~~~~~----~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~- 325 (487)
.|..+..++.| ..++..+.+|.+.++=.+. |+ .-+.+ .+++.. ..+-+...-.-.+..++|+|++
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-----~~~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-----AERFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-----cceeeccCCceeeeeccccCCcc
Confidence 47788889999 8888888898665543111 11 00000 011111 1111111112356788999976
Q ss_pred ---CEEEEEeCCeEEEEeCCC
Q 011368 326 ---QHLLSRDYMNLKLWDIRM 343 (487)
Q Consensus 326 ---~~l~s~~d~~i~iwd~~~ 343 (487)
.+++-.+|+.||+||+..
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred CCceEEEEecCcEEEEEecCC
Confidence 344556789999999975
No 436
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.34 E-value=10 Score=29.30 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=73.0
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (487)
Q Consensus 36 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (487)
..-.|.....-|+++..-|+|.|.+....... ..+ .-..+..+.+...
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~------------------------------~~~--~~~~i~~LNin~~ 49 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQR------------------------------TGR--QDSDISFLNINQE 49 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccc------------------------------ccc--ccCceeEEECCCc
Confidence 34467777778999999999999986544321 000 0012344444577
Q ss_pred eeEEEEEe---cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 116 INRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 116 I~~v~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
|++|+--+ ..+.+.|+.|+. ..+..||+....-..
T Consensus 50 italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~F----------------------------------------- 87 (136)
T PF14781_consen 50 ITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLF----------------------------------------- 87 (136)
T ss_pred eEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhh-----------------------------------------
Confidence 88886433 334556666654 579999998765322
Q ss_pred cceeeeecccCCCceeEEEeC---C-CCCEEEEecCCeEEEEEcc
Q 011368 193 NMATKVYPHAHDFNINSISNN---S-DCETFVSADDLRINLWNLE 233 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s---~-~~~~l~s~~d~~i~iwd~~ 233 (487)
...-.+.|+++.+- . +..+++.|.+..|.-+|.+
T Consensus 88 -------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 88 -------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred -------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 13445667777662 2 4556666788888888877
No 437
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.34 E-value=22 Score=33.27 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=80.5
Q ss_pred CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE--ec-CCCCEEEEEeCCCeEEEEEcc---CCccccccceeecc
Q 011368 225 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HP-IYCNLLAYSSSRGFVRLVDMR---QSALCDHSARILRD 298 (487)
Q Consensus 225 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p-~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~ 298 (487)
.+|++|.+......+..+......+..-...++.+++ +| +|..+.++...+|.+..|.+. ++......++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 5799998873323333221110111112234666665 34 352466667788988888775 33333344566666
Q ss_pred cccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCce----eeeeecccccccccccccCCCCccee
Q 011368 299 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDK 373 (487)
Q Consensus 299 h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (487)
...+..|+......+|..+.. --|+-|+.+..... +....+ ... .-++
T Consensus 207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~~l------------~aDv 259 (381)
T PF02333_consen 207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG-DGL------------VADV 259 (381)
T ss_dssp --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS-SSB-------------S-E
T ss_pred --------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccc-ccc------------ccCc
Confidence 467899999988888988864 77777887632211 111111 111 1122
Q ss_pred eEEEEc--CCC-CEEEEEc-CCCcEEEEEeCCC
Q 011368 374 FECSVS--GDG-LHFATGS-YSNLLRIFSHGVG 402 (487)
Q Consensus 374 ~~~~~s--~d~-~~l~sg~-~dg~i~iwd~~~~ 402 (487)
-.+++- +++ .||++.+ .+++..||+.+..
T Consensus 260 EGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 260 EGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 355553 344 3555444 5678999998754
No 438
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.25 E-value=31 Score=34.79 Aligned_cols=152 Identities=11% Similarity=0.116 Sum_probs=74.5
Q ss_pred EEEeCCCCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-----
Q 011368 209 SISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----- 276 (487)
Q Consensus 209 ~i~~s~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----- 276 (487)
+++.. ++.+.++| .| .++..||..... +..+ ..+........ ++. -+| .+.++|+.||
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~----a~M~~~R~~~~-v~~-l~g-~iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPV----APMNTKRSDFG-VAV-LDG-KLYAVGGFDGEKSLN 396 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--eecc----CCccCccccce-eEE-ECC-EEEEEeccccccccc
Confidence 34443 35666776 66 456778877443 2211 12222222111 111 245 7888898886
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C------CeEEEEeCCCCC-cee
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y------MNLKLWDIRMDS-TPV 348 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d------~~i~iwd~~~~~-~~~ 348 (487)
.+..||..+.+. .. ..+ +.........+. -+|+..++|+ + .++..||..+.. ..+
T Consensus 397 svE~YDp~~~~W--------~~--va~-----m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 397 SVECYDPVTNKW--------TP--VAP-----MLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred cEEEecCCCCcc--------cc--cCC-----CCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 477777776542 11 000 000011222222 2466666653 2 568888887521 222
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCc-----EEEEEeCCCCc
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-----LRIFSHGVGSA 404 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~-----i~iwd~~~~~~ 404 (487)
..+...... ..++.- ++...+.||.|+. |..||..+.+.
T Consensus 460 ~~M~~~R~~----------------~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 460 APMNTRRSG----------------FGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CCccccccc----------------ceEEEE-CCEEEEECCccCCCccceEEEEcCCCCce
Confidence 222222211 133332 6777788887763 67788776644
No 439
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.05 E-value=18 Score=31.83 Aligned_cols=195 Identities=14% Similarity=0.095 Sum_probs=115.6
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
.+||..-+++...+.|--.|-.+++.... ..+.
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~y-----------------------------------------------pLg~ 102 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETY-----------------------------------------------PLGS 102 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEE-----------------------------------------------ecCC
Confidence 67888888888888888888888876544 1344
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC--------
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-------- 275 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-------- 275 (487)
...-..|...|||..-++-....|.-.|-++. .++.+. ...+.-........|++.| .+-.++...
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~--evt~f~---lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa 176 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGLAIGRLDPKTL--EVTRFP---LPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPA 176 (353)
T ss_pred CCCCceEEECCCCCeeEecCcceeEEecCccc--ceEEee---cccccCCCcccceeeCCCc-cEEEeeccccceecCcc
Confidence 45556777888887766642224444454422 222221 1233344567788999999 887777532
Q ss_pred -CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeec
Q 011368 276 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKI 353 (487)
Q Consensus 276 -g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 353 (487)
+.|++|+.-.+ ..-..|+..|||..-++. .++.|-..|..+ + .-..+..
T Consensus 177 ~~~i~vfpaPqG---------------------------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~ 227 (353)
T COG4257 177 RNVISVFPAPQG---------------------------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQ 227 (353)
T ss_pred cCceeeeccCCC---------------------------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecC
Confidence 23444433322 345778899999877765 335666666654 2 2222222
Q ss_pred ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368 354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 412 (487)
.+.... +-+.+--+|.|+.-++-...+.+.-+|-.+..-....|.+.
T Consensus 228 P~~~~~------------gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs 274 (353)
T COG4257 228 PNALKA------------GSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS 274 (353)
T ss_pred CCcccc------------cccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCC
Confidence 211000 00255666788888887778888888887664444444443
No 440
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.99 E-value=4.2 Score=33.44 Aligned_cols=31 Identities=29% Similarity=0.241 Sum_probs=25.5
Q ss_pred cEEEEEEecCC-----CCEEEEEeCCCeEEEEEccC
Q 011368 255 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ 285 (487)
Q Consensus 255 ~v~~v~~~p~~-----~~~l~~~~~dg~i~iwd~~~ 285 (487)
.+.+++|+|.| .-+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999964 24788889999999997664
No 441
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.76 E-value=34 Score=37.07 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=89.0
Q ss_pred eEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE--------EecCCCCEEEEEeCCCeEE
Q 011368 208 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE--------FHPIYCNLLAYSSSRGFVR 279 (487)
Q Consensus 208 ~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--------~~p~~~~~l~~~~~dg~i~ 279 (487)
..+-+-|.=+..-...|+.+.+|+.++++... .+.+-...|..|. |.|.= +++++....-.|.
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~--------~~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~ 152 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESDNELA--------EYDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIV 152 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCCCccc--------cccchhhhheeeeeecCCCCcchhhh-heeEEecccceEE
Confidence 33444454344444478899999999644432 1233334444443 33333 3444444444555
Q ss_pred EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEE--eCCCC--Cceeeeeec--
Q 011368 280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW--DIRMD--STPVATFKI-- 353 (487)
Q Consensus 280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iw--d~~~~--~~~~~~~~~-- 353 (487)
|+-+.-.+.... ...|..+ -...-....|.++....+|+.+++|.||.|+=. ....+ ++.-..+..
T Consensus 153 ilgV~~~~~~~~-~~~f~~~-------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~ 224 (1311)
T KOG1900|consen 153 ILGVSFDEFTGE-LSIFNTS-------FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTK 224 (1311)
T ss_pred EEEEEeccccCc-ccccccc-------eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCch
Confidence 654433221100 0112110 000011357889998999999999988844422 22110 000000000
Q ss_pred --ccccccccccc--cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 354 --HEHLRPKLCDL--YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 354 --~~~~~~~~~~~--~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
-...++.+..+ .+.+.+ ..+.+......+.+-+..|+|.+|++...
T Consensus 225 s~ls~lvPs~~~~~~~~~dpI---~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 225 SVLSSLVPSLLSVPGSSKDPI---RQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hHHHHhhhhhhcCCCCCCCcc---eeeEeccccceeeeeccCceEEEEEccCC
Confidence 00111111111 123344 58888877888899999999999999873
No 442
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.65 E-value=21 Score=32.23 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=92.0
Q ss_pred eeEEEeCCCCCEEEE--e-c----------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC----CEE
Q 011368 207 INSISNNSDCETFVS--A-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NLL 269 (487)
Q Consensus 207 v~~i~~s~~~~~l~s--~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~----~~l 269 (487)
|..+...+++++-+. | . .-.|.+||+.+. +.++.+.++..... ..+.+..+.+..... .+.
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~-~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTN-QLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTT-CEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCC-cEEEEEECChHHcc-cccccceEEEEccCCCCcceEE
Confidence 455556655655544 2 1 127889999954 46777666544444 456788888886321 122
Q ss_pred -EEEeCCCeEEEEEccCCccccccceeecccccccCcc-ccc------cccccceeEEEEcC---CCCEEEEEeCCeEEE
Q 011368 270 -AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-SFF------TEIIASISDIKFAN---DGQHLLSRDYMNLKL 338 (487)
Q Consensus 270 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-~~~------~~~~~~v~~v~~s~---~~~~l~s~~d~~i~i 338 (487)
++=+..+.|.++|+.+++.. +.... ...+.+. ..+ ......+..++.+| +|++|.-+.-..-++
T Consensus 81 YItD~~~~glIV~dl~~~~s~----Rv~~~-~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~l 155 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSW----RVLHN-SFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKL 155 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEE----EEETC-GCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEE
T ss_pred EEeCCCcCcEEEEEccCCcEE----EEecC-CcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcE
Confidence 33334568999999998765 44443 2222211 111 11123467777765 677777554333344
Q ss_pred EeCCCC----Cc---------eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 339 WDIRMD----ST---------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 339 wd~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
|.+.+. .. .+..+ +.... .+ ..++++++|...++--..+.|..|+..+
T Consensus 156 y~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~----------~s----~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 156 YRVPTSVLRDPSLSDAQALASQVQDL-GDKGS----------QS----DGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEEEHHHHCSTT--HHH-HHHT-EEE-EE-------------SE----CEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred EEEEHHHhhCccccccccccccceec-cccCC----------CC----ceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 443320 00 01111 11000 01 2789999998888888999999999875
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.57 E-value=6.1 Score=42.27 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=54.7
Q ss_pred CCCceeEEEeCCCCCEEEEecCCeEEEEEccC--C-----CceeEEee-------cC--CCCCC-CCCCcEEEEEEecCC
Q 011368 203 HDFNINSISNNSDCETFVSADDLRINLWNLEI--S-----DQCFNIVD-------MK--PSNMD-DLTEVITSAEFHPIY 265 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~--~-----~~~~~~~~-------~~--~~~~~-~~~~~v~~v~~~p~~ 265 (487)
....|+|+....+|+.+++|.||.| |.+.- . .++-++-- +- ...+. .+.++|..++....-
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~l--yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGNL--YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCCE--EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 3667899998889999999966644 43321 1 11111100 00 01233 566789999999876
Q ss_pred CCEEEEEeCCCeEEEEEccC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQ 285 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~ 285 (487)
.++.+-++.|.|+.||+..
T Consensus 255 -~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 -NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -ceeeeeccCceEEEEEccC
Confidence 8999999999999999987
No 444
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.33 E-value=6.1 Score=32.52 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.0
Q ss_pred eeeEEEEcCCC------CEEEEEcCCCcEEEEEeCCC
Q 011368 372 DKFECSVSGDG------LHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 372 ~~~~~~~s~d~------~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+..++|||-| .+|++.+.+|.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 35799999943 47889999999999997643
No 445
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.14 E-value=34 Score=34.10 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=37.9
Q ss_pred eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC---EEEEEcCCCcEEEEEeCCCCc
Q 011368 335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL---HFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~---~l~sg~~dg~i~iwd~~~~~~ 404 (487)
+|.--|+++ ++....++...+-. +++. ......-+.+..+|+ .++.+..+|.+++.|..+|+.
T Consensus 272 s~vAld~~T-G~~~W~~Q~~~~D~---wD~d---~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 272 SIVARDPDT-GKIKWHYQTTPHDE---WDYD---GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eEEEEcccc-CCEEEeeeCCCCCC---cccc---CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 566667776 77766666433211 1111 111001233334676 788999999999999999865
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=28 Score=33.02 Aligned_cols=120 Identities=9% Similarity=0.166 Sum_probs=78.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
++|.++.| ++|.+.+|.--.|++|.+++....+.+......
T Consensus 67 G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~------------------------------------- 107 (657)
T KOG2377|consen 67 GEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE------------------------------------- 107 (657)
T ss_pred CceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHHH-------------------------------------
Confidence 88999999 688999999999999999998554432211000
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
.......|....|+.+ .-+|.-.+.-+-+|.+....+.++. .+.|...|..-.|.++. ..++.++
T Consensus 108 ------ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRl-------Vks~~~nvnWy~yc~et-~v~LL~t 172 (657)
T KOG2377|consen 108 ------CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRL-------VKSHNLNVNWYMYCPET-AVILLST 172 (657)
T ss_pred ------hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhh-------hhhcccCccEEEEcccc-ceEeeec
Confidence 1233456888899855 4555555556777776644444432 46677788888898887 5444443
Q ss_pred --CCCeEEEEEccCCc
Q 011368 274 --SRGFVRLVDMRQSA 287 (487)
Q Consensus 274 --~dg~i~iwd~~~~~ 287 (487)
..+.+.=+-++++.
T Consensus 173 ~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 173 TVLENVLNPFHFRAGT 188 (657)
T ss_pred cccccccccEEEeece
Confidence 34455555555544
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.78 E-value=13 Score=28.77 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=47.1
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEccCCccc----cccceeecccccccCccccccccccceeEEEEcC-----CCCEEE
Q 011368 259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALC----DHSARILRDAAESHGSKSFFTEIIASISDIKFAN-----DGQHLL 329 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-----~~~~l~ 329 (487)
-.|.... ..|++++..|+|.|++....... ...++.+.- ...|++++-.+ +...|+
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--------------n~~italaaG~l~~~~~~D~Ll 68 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--------------NQEITALAAGRLKPDDGRDCLL 68 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC--------------CCceEEEEEEecCCCCCcCEEE
Confidence 3566666 67888889999999987754321 111223332 45677775433 356888
Q ss_pred EEeCCeEEEEeCCC
Q 011368 330 SRDYMNLKLWDIRM 343 (487)
Q Consensus 330 s~~d~~i~iwd~~~ 343 (487)
.|+...+..||+..
T Consensus 69 iGt~t~llaYDV~~ 82 (136)
T PF14781_consen 69 IGTQTSLLAYDVEN 82 (136)
T ss_pred EeccceEEEEEccc
Confidence 89889999999975
No 448
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.71 E-value=4.4 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=24.4
Q ss_pred CCCCEEEEEe--CCeEEEEeCCCCCceeeeeeccccc
Q 011368 323 NDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 357 (487)
Q Consensus 323 ~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~ 357 (487)
|++++|+++. +++|.++|..+ ...+..+.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence 5778777654 49999999976 7777777664443
No 449
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.71 E-value=38 Score=34.17 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcEEEEEeCC------CcEEEEEccccceeE
Q 011368 116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKK 151 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~ 151 (487)
-.+++. -++...++|+.| .++..||...++...
T Consensus 325 ~~~~~~---~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 325 RVGVAV---LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred cccEEE---ECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 344554 356788888888 356677777666443
No 450
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.93 E-value=0.11 Score=48.53 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=85.2
Q ss_pred EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e-C
Q 011368 256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-Y 333 (487)
Q Consensus 256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~-d 333 (487)
.-...|-|.+ .-++.++.+..+..||-...... .... .+....++|..++..++.- . .
T Consensus 37 pi~~~w~~e~-~nlavaca~tiv~~YD~agq~~l-----e~n~--------------tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 37 PIIHRWRPEG-HNLAVACANTIVIYYDKAGQVIL-----ELNP--------------TGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred cceeeEecCC-CceehhhhhhHHHhhhhhcceec-----ccCC--------------chhHhhhhhccccchhhhhhhcC
Confidence 3456688888 66888888888999986653221 1111 2456778888888877653 3 3
Q ss_pred CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 413 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 413 (487)
+.+.+||+.+.....-.+.+.... .-+.|++.+..++.|...|.+.|++..+... ......|.
T Consensus 97 ~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgtsR~-iiv~Gkh~ 159 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTSRR-IIVMGKHQ 159 (615)
T ss_pred CCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccchhh-hhhhcccc
Confidence 999999997632222222222211 1378999999999999999999999876522 23333366
Q ss_pred CccccceEee
Q 011368 414 NENRKPILQA 423 (487)
Q Consensus 414 ~~v~~~~~~~ 423 (487)
..+.+.++.+
T Consensus 160 RRgtq~av~l 169 (615)
T KOG2247|consen 160 RRGTQIAVTL 169 (615)
T ss_pred cceeEEEecc
Confidence 6666666655
No 451
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.78 E-value=49 Score=34.61 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=19.8
Q ss_pred EEEEEcCCCcEEEEEeCCCCce
Q 011368 384 HFATGSYSNLLRIFSHGVGSAG 405 (487)
Q Consensus 384 ~l~sg~~dg~i~iwd~~~~~~~ 405 (487)
.++.++.+|.+++.|.++|+.+
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEE
Confidence 7899999999999999999654
No 452
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.44 E-value=22 Score=30.40 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=61.4
Q ss_pred CceeEEEeCCCCCEEEEe--cCCeEEEEEc--cCCC--ceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeE
Q 011368 205 FNINSISNNSDCETFVSA--DDLRINLWNL--EISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 278 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~--~~~~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 278 (487)
..-+.++|+.+.+.+..- .+-+|.-||. .++. +...+++++...-.++.. .-.++...+| ++.++.-..++|
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~ID~eG-~L~Va~~ng~~V 235 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTIDTEG-NLYVATFNGGTV 235 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceEccCC-cEEEEEecCcEE
Confidence 344678998888877765 6778877884 3222 111233322211111211 1334456678 888888888999
Q ss_pred EEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
...|..+++.+ ..+.. ....|++++|-
T Consensus 236 ~~~dp~tGK~L----~eikl-------------Pt~qitsccFg 262 (310)
T KOG4499|consen 236 QKVDPTTGKIL----LEIKL-------------PTPQITSCCFG 262 (310)
T ss_pred EEECCCCCcEE----EEEEc-------------CCCceEEEEec
Confidence 99999999866 44443 14579999996
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.26 E-value=5.4 Score=37.41 Aligned_cols=106 Identities=11% Similarity=0.090 Sum_probs=58.4
Q ss_pred CCCEEEEe-cCCeEEEE-EccCCCc-eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc
Q 011368 215 DCETFVSA-DDLRINLW-NLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 291 (487)
Q Consensus 215 ~~~~l~s~-~d~~i~iw-d~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 291 (487)
.|.-+... .||-|.-| |++..+. .+..+ +.++-....+..+.=..+. +-+++-+..|++.++...+.+.+
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~----R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~l-- 351 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHI----RNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLL-- 351 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceee----eccccCcccceeecccccc-ceEEEEcCCCceeeeecccCcce--
Confidence 45556666 78887766 5554332 11111 0111111222222211222 55677777777777755443321
Q ss_pred cceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCC
Q 011368 292 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 343 (487)
Q Consensus 292 ~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~ 343 (487)
.++. --..+.-+++||++.++++-..|.++++.+++
T Consensus 352 ---L~~~-------------~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 352 ---LFER-------------AYQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ---ehhh-------------hhcCcceeeeCcccchheeecCCceEEEEecC
Confidence 1111 02356678999999999988779999999875
No 454
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.25 E-value=53 Score=34.50 Aligned_cols=82 Identities=6% Similarity=-0.017 Sum_probs=47.7
Q ss_pred ccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCC----CcceeeEEEEcCCCCEEEE
Q 011368 313 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND----SIFDKFECSVSGDGLHFAT 387 (487)
Q Consensus 313 ~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~d~~~l~s 387 (487)
...|.++....-+.+++.. +||+|.++|-.+ .+.+...............+...+ ++.....++|||.+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 3567777777767777766 689999999876 433333310001000000111101 1101235899999999999
Q ss_pred EcCCCcEE
Q 011368 388 GSYSNLLR 395 (487)
Q Consensus 388 g~~dg~i~ 395 (487)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 99999866
No 455
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.57 E-value=3.7 Score=23.62 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=19.5
Q ss_pred cCcEEEEEEcCCCCEEEEEe-cC--CcEEEE
Q 011368 32 VDIVSAIEFDKTGDYLAVGD-RG--GRVILF 59 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~-~d--g~i~iw 59 (487)
...-.+.+|||||++|+-.+ .+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44577899999998887665 44 666665
No 456
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.02 E-value=41 Score=32.20 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=38.1
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR 342 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~ 342 (487)
..+|.+-+.||.+.+|+-+.-... +.+.. .--...+.|.+..+.+++++ +..+.-|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~----~~lp~--------------~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFS----RFLPD--------------FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEE----EEcCC--------------CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 378899999999999987763311 22222 11123467777777777765 4788888753
No 457
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.50 E-value=4.3 Score=23.36 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=14.5
Q ss_pred CCeEEEEEcCCCCEEEEec
Q 011368 460 SKLLHLAWHPTTNLIACAN 478 (487)
Q Consensus 460 ~~v~~~~~spd~~~la~~s 478 (487)
..-...+|||||+.|+.++
T Consensus 9 ~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEE
T ss_pred ccccCEEEecCCCEEEEEe
Confidence 3556889999999999776
No 458
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.46 E-value=14 Score=35.06 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=33.1
Q ss_pred CcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecc
Q 011368 254 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 298 (487)
Q Consensus 254 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 298 (487)
..+.++..+|.+ .+.|+...=|.|.++|+.++..+ +.|++
T Consensus 308 R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv----rmWKG 347 (415)
T PF14655_consen 308 REGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV----RMWKG 347 (415)
T ss_pred ceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh----hhhcc
Confidence 457889999998 88888777799999999998765 66766
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.29 E-value=30 Score=29.35 Aligned_cols=128 Identities=15% Similarity=0.189 Sum_probs=69.3
Q ss_pred eEEEEcCCCCEEEEEeCCeEEEEeCCC-CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---C
Q 011368 317 SDIKFANDGQHLLSRDYMNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---N 392 (487)
Q Consensus 317 ~~v~~s~~~~~l~s~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g 392 (487)
..++-++.+.++++.+.+.|.+|++.. ...++..+..-.. |..+.++..|.||+|-=.+ .
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~----------------V~~l~y~~~GDYlvTlE~k~~~~ 84 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGR----------------VLQLVYSEAGDYLVTLEEKNKRS 84 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhh----------------eeEEEeccccceEEEEEeecCCc
Confidence 344444433344444558999999973 2455666654432 2589999999999976432 2
Q ss_pred ---cEEEE---EeCC-C-CceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCC-CccccccccCCCeE
Q 011368 393 ---LLRIF---SHGV-G-SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS-GHHELSYNLSSKLL 463 (487)
Q Consensus 393 ---~i~iw---d~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~-~~~~~~~~~~~~v~ 463 (487)
.+|+| +... . ......+-+|.- .+... .... ++...-.....+..
T Consensus 85 ~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v----------------------~~~~~----~~~~~qleiiElPl~~~p~ 138 (215)
T PF14761_consen 85 PVDFVRAYFNWRSQKEENSPVRVRIAGHRV----------------------TPSFN----ESSKDQLEIIELPLSEPPL 138 (215)
T ss_pred cceEEEEEEEhhhhcccCCcEEEEEccccc----------------------ccCCC----CccccceEEEEecCCCCCC
Confidence 45553 2221 1 111111112210 00000 0000 01111223456778
Q ss_pred EEEEcCCCCEEEEecCCeEEEEe
Q 011368 464 HLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 464 ~~~~spd~~~la~~s~~~~~i~~ 486 (487)
.++-.|-.--|++|+++.+.+|.
T Consensus 139 ciaCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 139 CIACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EEEecCCCCCEEEEcCCEEEEEE
Confidence 99999988888899999999986
No 460
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.30 E-value=32 Score=28.99 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=48.1
Q ss_pred CCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeee---
Q 011368 125 PNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVY--- 199 (487)
Q Consensus 125 ~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 199 (487)
.+|.++.+.+ ....|++||+.+++........ . ..++.-+...-........|........-
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~------------~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-P------------DTVFGEGITKLGDYFYQLTWKEGVAFKYDADT 120 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeecC-C------------ccccccceeeccceEEEEEeccceeEEEChHH
Confidence 3566677765 3457999999998877654433 1 23333344444445555556543332210
Q ss_pred ---cccC--CCceeEEEeCCCCCEEEEe-cCCeEEEEEcc
Q 011368 200 ---PHAH--DFNINSISNNSDCETFVSA-DDLRINLWNLE 233 (487)
Q Consensus 200 ---~~~~--~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~ 233 (487)
+..+ .+.=+.+ ..|+..|+.+ ...+++.-|.+
T Consensus 121 ~~~lg~~~y~GeGWgL--t~d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 121 LEELGRFSYEGEGWGL--TSDDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred hhhhcccccCCcceee--ecCCcceEeeCCceEEEecCHH
Confidence 0111 1222233 3345556665 55666666655
No 461
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.66 E-value=73 Score=32.77 Aligned_cols=71 Identities=13% Similarity=-0.012 Sum_probs=42.4
Q ss_pred EEEEEecCCCCEEEEEeCCC-----eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368 257 TSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 331 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 331 (487)
..++|-|+| ..+++-..|| .|+.+....-+- -.|.. -.+....+..++|+-....++.+
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrH-----Gef~l----------r~~~dEk~~~~~wn~~s~vlav~ 313 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRH-----GEFDL----------RVGCDEKAFLENWNLLSTVLAVA 313 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCccc-----CCccc----------cCCchhhhhhhhhhHHHHHHHHh
Confidence 458899999 8999877554 355554322110 00000 01113456677887766667666
Q ss_pred eCCeEEEEeCCC
Q 011368 332 DYMNLKLWDIRM 343 (487)
Q Consensus 332 ~d~~i~iwd~~~ 343 (487)
..+.+++|-...
T Consensus 314 ~~n~~~lwttkN 325 (1243)
T COG5290 314 EGNLLKLWTTKN 325 (1243)
T ss_pred hcceEEEEEccc
Confidence 668999998754
No 462
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=80.65 E-value=40 Score=29.75 Aligned_cols=198 Identities=6% Similarity=0.005 Sum_probs=99.4
Q ss_pred cceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.-...+.|. .+|.++-+.+.-| .|+.+|+.+++.......+.
T Consensus 45 aFTQGL~~~--~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~---------------------------------- 88 (264)
T PF05096_consen 45 AFTQGLEFL--DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP---------------------------------- 88 (264)
T ss_dssp -EEEEEEEE--ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT----------------------------------
T ss_pred ccCccEEec--CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc----------------------------------
Confidence 345667773 4677777777555 78899999988665432211
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
..--..++.. +++...-. .++...+||.++- +....+ .+. ..=+.++ .++ ..|+
T Consensus 89 ------------~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl-~~~~~~-----~y~---~EGWGLt--~dg-~~Li 143 (264)
T PF05096_consen 89 ------------RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL-KKIGTF-----PYP---GEGWGLT--SDG-KRLI 143 (264)
T ss_dssp ------------T--EEEEEEE-TTEEEEEESSSSEEEEEETTTT-EEEEEE-----E-S---SS--EEE--ECS-SCEE
T ss_pred ------------cccceeEEEE-CCEEEEEEecCCeEEEEccccc-eEEEEE-----ecC---CcceEEE--cCC-CEEE
Confidence 1111223332 33455556 8899999999853 333332 122 2335566 456 5677
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 349 (487)
.+.....|..+|..+-+.. +.+... ... ..-..++.+.|- +|...|-. ....|...|..+ +..+.
T Consensus 144 ~SDGS~~L~~~dP~~f~~~----~~i~V~-~~g-------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t-G~V~~ 209 (264)
T PF05096_consen 144 MSDGSSRLYFLDPETFKEV----RTIQVT-DNG-------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET-GKVVG 209 (264)
T ss_dssp EE-SSSEEEEE-TTT-SEE----EEEE-E-ETT-------EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEE
T ss_pred EECCccceEEECCcccceE----EEEEEE-ECC-------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC-CeEEE
Confidence 7666778999998876543 222220 000 002346666765 45444333 236777788876 77666
Q ss_pred eeeccccccccc---ccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368 350 TFKIHEHLRPKL---CDLYNNDSIFDKFECSVSGDGLHFATGS 389 (487)
Q Consensus 350 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~d~~~l~sg~ 389 (487)
.+....-..... ......+.. +.+++.|....|...+
T Consensus 210 ~iDls~L~~~~~~~~~~~~~~dVL---NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 210 WIDLSGLRPEVGRDKSRQPDDDVL---NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE-HHHHHHHTSTTST--TTS-E---EEEEEETTTTEEEEEE
T ss_pred EEEhhHhhhcccccccccccCCee---EeEeEeCCCCEEEEEe
Confidence 554322110000 000111222 5999998665544433
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.47 E-value=0.31 Score=45.64 Aligned_cols=131 Identities=9% Similarity=0.120 Sum_probs=87.8
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
.+++.-++.++.+..+..||-....... ..-
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq~~le-------------------------------------------------~n~ 73 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQVILE-------------------------------------------------LNP 73 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhcceecc-------------------------------------------------cCC
Confidence 4666678888889999999876554332 223
Q ss_pred CCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEEEEEeCCCeEEE
Q 011368 204 DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRL 280 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 280 (487)
++....++|..++..++. + ..+.+.+||+.+... .++ .+.+ +.... +.|++.+ ..++.+...|.+.|
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL------E~gg~~s~sl--l~wsKg~-~el~ig~~~gn~vi 143 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL------ESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVI 143 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH------hccCcchHHH--HhhccCC-ccccccccccceEE
Confidence 455677888888877766 4 889999999984322 110 1111 22222 6788887 88888888999999
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
++..+.+.. -... .|...+.++++.+.+..+..
T Consensus 144 ynhgtsR~i----iv~G-------------kh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 144 YNHGTSRRI----IVMG-------------KHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred Eeccchhhh----hhhc-------------ccccceeEEEecccceeeec
Confidence 998876532 1111 24678899999887755443
No 464
>PRK10115 protease 2; Provisional
Probab=79.09 E-value=85 Score=32.61 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=23.6
Q ss_pred cEEEEEEcCCCCEEEEEec-----CCcEEEEEeeCCc
Q 011368 34 IVSAIEFDKTGDYLAVGDR-----GGRVILFETVGGK 65 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~-----dg~i~iw~~~~~~ 65 (487)
.+..+.+||||++|+.+.. ...|++-|+.+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 4778899999999887642 2357788877665
No 465
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.58 E-value=69 Score=34.79 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.4
Q ss_pred cCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 379 SGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 379 s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
++++..++++..||.+..||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998743
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.82 E-value=18 Score=36.29 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=41.3
Q ss_pred CCCCEEEEe-cCCeEEEEEccC---CCceeEEeecCCC-------CC--------CCCCCcEEEEEEec----CCCCEEE
Q 011368 214 SDCETFVSA-DDLRINLWNLEI---SDQCFNIVDMKPS-------NM--------DDLTEVITSAEFHP----IYCNLLA 270 (487)
Q Consensus 214 ~~~~~l~s~-~d~~i~iwd~~~---~~~~~~~~~~~~~-------~~--------~~~~~~v~~v~~~p----~~~~~l~ 270 (487)
++...++.+ .||.+....... .+........... .+ ......+..+++++ +. .+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence 456677777 888888887764 2222222111100 00 01123445556655 44 8999
Q ss_pred EEeCCCeEEEEEccCCccc
Q 011368 271 YSSSRGFVRLVDMRQSALC 289 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~ 289 (487)
+.+.|+.+|+||+.++..+
T Consensus 235 tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EEETTSEEEEEETTTTCEE
T ss_pred EEeCCCeEEEEECCCCeEE
Confidence 9999999999999998763
No 467
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=74.04 E-value=68 Score=28.95 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=24.3
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEee
Q 011368 35 VSAIEFDKTGDYLAVGDRGGRVILFETV 62 (487)
Q Consensus 35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~ 62 (487)
-+.|+|+|.+.+-++....+...+||..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCC
Confidence 4689999999888888788899999986
No 468
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=72.70 E-value=11 Score=19.82 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=18.6
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEE
Q 011368 374 FECSVSGDGLHFATGSYSNLLRIF 397 (487)
Q Consensus 374 ~~~~~s~d~~~l~sg~~dg~i~iw 397 (487)
.+++++++|+.+++=+..+.|.++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 478888888888877777777664
No 469
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.60 E-value=18 Score=25.75 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=27.9
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 333 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d 333 (487)
..+|.+.-||..+++.. ..+.+ -.-.+.|++++|+.+++.+.-
T Consensus 34 ~~~GRll~ydp~t~~~~----vl~~~--------------L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETT----VLLDG--------------LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp ---EEEEEEETTTTEEE----EEEEE--------------ESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCcCEEEEECCCCeEE----EehhC--------------CCccCeEEEcCCCCEEEEEec
Confidence 44678888999887632 22222 235689999999999998864
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=71.34 E-value=79 Score=28.55 Aligned_cols=57 Identities=5% Similarity=0.084 Sum_probs=40.3
Q ss_pred CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC------CCCEEEEEcCCCcEEEEEeCCCCce
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSAG 405 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------d~~~l~sg~~dg~i~iwd~~~~~~~ 405 (487)
|.|-+||+. ++.++++...... ...+.|+..| .|.+|+---.||+|..+|..+++..
T Consensus 222 G~VdvFd~~--G~l~~r~as~g~L-------------NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 222 GYVNVFTLN--GQLLRRVASSGRL-------------NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred ceEEEEcCC--CcEEEEeccCCcc-------------cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 789999985 7888887533221 1125777766 4667776667999999999988553
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=71.19 E-value=23 Score=35.52 Aligned_cols=28 Identities=11% Similarity=0.414 Sum_probs=24.3
Q ss_pred CCcEEEEEeCCCcEEEEEccccceeEee
Q 011368 126 NGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (487)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 153 (487)
+..++++.+.|+.+|+||+.++++....
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 5678999999999999999999886553
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.07 E-value=1.4e+02 Score=31.46 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=77.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.+...++|+| .+...||.....|...||++............... . ..+.+
T Consensus 146 ~~~aDv~FnP-~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~-------~-~~gsi-------------------- 196 (765)
T PF10214_consen 146 FPHADVAFNP-WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR-------N-ISGSI-------------------- 196 (765)
T ss_pred CccceEEecc-CccceEEEEeccCcEEEEEeccccccCCcceeecc-------C-CCccc--------------------
Confidence 4678899987 34568999999999999999322111100000000 0 00000
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
.+=....+.-..+.|.++-+.|+.+....+.++|++.......++ .......|..+.-+|..+.+++.-+
T Consensus 197 ----~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~------~~~~~~~IlDv~~~~~~~~~~FiLT 266 (765)
T PF10214_consen 197 ----IFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLV------TAKTWSWILDVKRSPDNPSHVFILT 266 (765)
T ss_pred ----cCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhc------cCCChhheeeEEecCCccceEEEEe
Confidence 000111244568889989889999988899999999544311121 2234567888888887423333332
Q ss_pred CCCeEEEEEccC
Q 011368 274 SRGFVRLVDMRQ 285 (487)
Q Consensus 274 ~dg~i~iwd~~~ 285 (487)
...|...|+..
T Consensus 267 -s~eiiw~~~~~ 277 (765)
T PF10214_consen 267 -SKEIIWLDVKS 277 (765)
T ss_pred -cCeEEEEEccC
Confidence 25677778776
No 473
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=68.96 E-value=23 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=22.7
Q ss_pred eEEEEcCCCCEEEEEc-CCCcEEEEEeCC
Q 011368 374 FECSVSGDGLHFATGS-YSNLLRIFSHGV 401 (487)
Q Consensus 374 ~~~~~s~d~~~l~sg~-~dg~i~iwd~~~ 401 (487)
..+.++|++++|..++ ..+.|++|+...
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4899999999887766 568999998753
No 474
>PHA03098 kelch-like protein; Provisional
Probab=68.83 E-value=1.3e+02 Score=30.09 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=15.5
Q ss_pred CCCEEEEEcCC-----CcEEEEEeCCC
Q 011368 381 DGLHFATGSYS-----NLLRIFSHGVG 402 (487)
Q Consensus 381 d~~~l~sg~~d-----g~i~iwd~~~~ 402 (487)
+++.++.|+.+ +.+.+||..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 67777777764 46788887765
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=68.22 E-value=82 Score=27.58 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=63.1
Q ss_pred EEEecCCCCEEEEEeC-C--CeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368 259 AEFHPIYCNLLAYSSS-R--GFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 333 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~-d--g~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d 333 (487)
-.+.|+| .++.+|+. + ..+++++... ... ..+...... + ....+-..+..-|||+.|+.|+ .
T Consensus 72 g~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~-----~~w~e~~~~------m-~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 72 GAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGT-----CDWTESPND------M-QSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred cCCCCCC-CEEEeCCCCccccceEEEecCCCCCC-----CCceECccc------c-cCCCccccceECCCCCEEEEeCcC
Confidence 3577899 99998876 3 3578887654 110 111110000 0 0023455566678999998875 3
Q ss_pred -CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 334 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 334 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+..+|.-.........+........ ......+ --+..-|||++++.+..+. .|||..+.
T Consensus 139 ~~t~E~~P~~~~~~~~~~~~~l~~~~~-----~~~~nlY--P~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 139 NPTYEFWPPKGPGPGPVTLPFLSQTSD-----TLPNNLY--PFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCcccccCCccCCCCceeeecchhhhc-----cCccccC--ceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 55666665321111111110000000 0000111 3577889999999888754 46788776
No 476
>PHA03098 kelch-like protein; Provisional
Probab=67.67 E-value=1.4e+02 Score=29.92 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCcEEEEEeCC-----CcEEEEEccccceeEee
Q 011368 126 NGSMFILSTND-----KTIKLWKVRDQKVKKIK 153 (487)
Q Consensus 126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~ 153 (487)
++..++.|+.+ ..+..||..+++.....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 46677777755 35777888777665443
No 477
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.17 E-value=16 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFE 60 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~ 60 (487)
.|.+++..+ .+++.+...+.+|||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 588888775 4888888889999873
No 478
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.04 E-value=1.3e+02 Score=32.75 Aligned_cols=31 Identities=35% Similarity=0.611 Sum_probs=26.4
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeC
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVG 63 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 63 (487)
.....++|+|...++|.|..+|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3566889999999999999999999987543
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=65.03 E-value=1.9e+02 Score=30.59 Aligned_cols=182 Identities=15% Similarity=0.112 Sum_probs=96.4
Q ss_pred cCCCceeEEEeC---C----CCCEEEEecCCeEEEEEccCC------CceeEEeecCC-CCCC---CCCCcEEEEEEecC
Q 011368 202 AHDFNINSISNN---S----DCETFVSADDLRINLWNLEIS------DQCFNIVDMKP-SNMD---DLTEVITSAEFHPI 264 (487)
Q Consensus 202 ~~~~~v~~i~~s---~----~~~~l~s~~d~~i~iwd~~~~------~~~~~~~~~~~-~~~~---~~~~~v~~v~~~p~ 264 (487)
....+|..|+|. . ..++|++=....+.|+...-. ......++..+ ..+. .-..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 223555546777777772211 11000000000 0111 12235678999998
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 344 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~ 344 (487)
....||.....|...|||+............+..... +....-.........+.|.++-..|+.++...+.++|+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~--gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~- 233 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS--GSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES- 233 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCC--ccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC-
Confidence 7689999999999999999322111100011111000 0000000112456689999998888888888999999986
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCC--CCEEEEEcCCCcEEEEEeCC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~sg~~dg~i~iwd~~~ 401 (487)
......+...... +.| .++.-+|+ +..++- + ...|...++..
T Consensus 234 ~~~~~~l~~~~~~----------~~I---lDv~~~~~~~~~~FiL-T-s~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTW----------SWI---LDVKRSPDNPSHVFIL-T-SKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCCh----------hhe---eeEEecCCccceEEEE-e-cCeEEEEEccC
Confidence 3332212211111 122 46777765 222322 2 24677777776
No 480
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=63.66 E-value=1.9e+02 Score=30.04 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=23.9
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEe
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFET 61 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~ 61 (487)
.+.|-+.+||.|.+.++....+..|.+++-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 457889999999997777777778888763
No 481
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=63.54 E-value=14 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.6
Q ss_pred EEEEEcCCCcEEEEEeCCCCc
Q 011368 384 HFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 384 ~l~sg~~dg~i~iwd~~~~~~ 404 (487)
.+++++.+|.++.+|.++|+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcE
Confidence 577788999999999988844
No 482
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=62.77 E-value=2.5e+02 Score=31.17 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=15.8
Q ss_pred CCCeEEEEEcCCCCEEEEecCC
Q 011368 459 SSKLLHLAWHPTTNLIACANGN 480 (487)
Q Consensus 459 ~~~v~~~~~spd~~~la~~s~~ 480 (487)
-+.+.++|.+|||..++.-.+|
T Consensus 661 lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 661 LNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred cCCcceEEECCCCcEEEecCCc
Confidence 3456789999999887665443
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=58.45 E-value=48 Score=30.18 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=51.2
Q ss_pred eeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368 316 ISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 394 (487)
Q Consensus 316 v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i 394 (487)
+++|...++|.+|++... ..|.+.|-++ ++.+..+.+....-..+ .-...++-.|-+++-.+..++.|
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~df~~----------~~~~f~~QHdar~~~~~~~~~~I 214 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSDFTL----------PATNFSWQHDARFLNESNDDGTI 214 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCcccc----------cCCcEeeccCCEEeccCCCCCEE
Confidence 677788899999999876 8999999887 88888887663211000 00134555566666666778888
Q ss_pred EEEEeC
Q 011368 395 RIFSHG 400 (487)
Q Consensus 395 ~iwd~~ 400 (487)
.|+|=.
T Consensus 215 slFDN~ 220 (299)
T PF14269_consen 215 SLFDNA 220 (299)
T ss_pred EEEcCC
Confidence 888863
No 484
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=58.10 E-value=53 Score=23.27 Aligned_cols=28 Identities=11% Similarity=0.161 Sum_probs=23.3
Q ss_pred ceeEEEEcCCCCEEEEEe--CCeEEEEeCC
Q 011368 315 SISDIKFANDGQHLLSRD--YMNLKLWDIR 342 (487)
Q Consensus 315 ~v~~v~~s~~~~~l~s~~--d~~i~iwd~~ 342 (487)
..+.|.++|++++|..++ .+.|++|..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 457899999999998875 4899999875
No 485
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=55.71 E-value=2e+02 Score=27.75 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=25.0
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 373 KFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 373 ~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+..++..+..+.|++.+.+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 358999998899999999999999999864
No 486
>PHA02790 Kelch-like protein; Provisional
Probab=54.92 E-value=2.2e+02 Score=28.06 Aligned_cols=146 Identities=8% Similarity=-0.025 Sum_probs=0.0
Q ss_pred CCCEEEEEecCC--cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEE
Q 011368 43 TGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120 (487)
Q Consensus 43 ~~~~l~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~ 120 (487)
+|.+.+.|+.++ .+..||..++ .......+.... .....+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n-------------------------~W~~~~~l~~~r------------~~~~~~~ 360 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDA-------------------------AWVNMPSLLKPR------------CNPAVAS 360 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCC-------------------------eEEECCCCCCCC------------cccEEEE
Q ss_pred EEecCCCcEEEEEeCCCc---EEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368 121 WCAAPNGSMFILSTNDKT---IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (487)
Q Consensus 121 ~~~~~~~~~l~s~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (487)
. +|+..+.|+.++. +..||..+++....
T Consensus 361 ~----~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--------------------------------------------- 391 (480)
T PHA02790 361 I----NNVIYVIGGHSETDTTTEYLLPNHDQWQFG--------------------------------------------- 391 (480)
T ss_pred E----CCEEEEecCcCCCCccEEEEeCCCCEEEeC---------------------------------------------
Q ss_pred eecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC--
Q 011368 198 VYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-- 275 (487)
Q Consensus 198 ~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-- 275 (487)
..-....-...+..-+++..+.| |.+..||.+++.-.. ...+.........+.. ++ ++.+.|+.+
T Consensus 392 --~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~------~~~m~~~r~~~~~~v~--~~-~IYviGG~~~~ 458 (480)
T PHA02790 392 --PSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSNTWTL------IDDPIYPRDNPELIIV--DN-KLLLIGGFYRG 458 (480)
T ss_pred --CCCCCccccceEEEECCEEEEEC--CceEEecCCCCcEeE------cCCCCCCccccEEEEE--CC-EEEEECCcCCC
Q ss_pred ---CeEEEEEccCCc
Q 011368 276 ---GFVRLVDMRQSA 287 (487)
Q Consensus 276 ---g~i~iwd~~~~~ 287 (487)
..+..||..+++
T Consensus 459 ~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 459 SYIDTIEVYNNRTYS 473 (480)
T ss_pred cccceEEEEECCCCe
No 487
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=54.71 E-value=74 Score=32.91 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368 252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 331 (487)
Q Consensus 252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 331 (487)
-..+|.+.++..+ ++.++.+|.|.++...+.... .....| ..|...|+.+.+..+|-+++-.
T Consensus 625 g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~----~~leah----------qee~~~Vthm~~~~~gVwvafa 686 (925)
T KOG3522|consen 625 GSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRS----WDLEAH----------QEEAHSVTHMLYLDNGVWVAFA 686 (925)
T ss_pred CCccccchhhhhc----eeeeecCCceEEEechhcccc----chhHHH----------HhhcceEEEEEeeCCceEEEEc
Confidence 3456777777654 666778999999988764322 222222 2235689999999888777765
Q ss_pred eCCeEEEEeCCC
Q 011368 332 DYMNLKLWDIRM 343 (487)
Q Consensus 332 ~d~~i~iwd~~~ 343 (487)
+...+++++..+
T Consensus 687 sG~~~rlfhtet 698 (925)
T KOG3522|consen 687 SGDEERLFHTET 698 (925)
T ss_pred CCCEEEEecccc
Confidence 544666665544
No 488
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=53.91 E-value=22 Score=20.55 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=15.8
Q ss_pred CCCEEEEEcCCCcEEEEEeCC
Q 011368 381 DGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 381 d~~~l~sg~~dg~i~iwd~~~ 401 (487)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 355788899999999999764
No 489
>PRK10115 protease 2; Provisional
Probab=51.33 E-value=3.1e+02 Score=28.64 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=37.3
Q ss_pred eEEEeCCCCCEEEEe-c-C-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEE-EEEEecCCCCEEEEEeC---CC
Q 011368 208 NSISNNSDCETFVSA-D-D-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSS---RG 276 (487)
Q Consensus 208 ~~i~~s~~~~~l~s~-~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~---dg 276 (487)
..++|.+|++.|+.+ . + ..|+.+++.++......+ +.+...... .+..+.++ .+++..+. ++
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv------~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~ 247 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELV------YEEKDDTFYVSLHKTTSK-HYVVIHLASATTS 247 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEE------EeeCCCCEEEEEEEcCCC-CEEEEEEECCccc
Confidence 458999998877665 3 2 367777887552222211 122222222 22333366 55554443 45
Q ss_pred eEEEEEcc
Q 011368 277 FVRLVDMR 284 (487)
Q Consensus 277 ~i~iwd~~ 284 (487)
.+.+++..
T Consensus 248 ~~~l~~~~ 255 (686)
T PRK10115 248 EVLLLDAE 255 (686)
T ss_pred cEEEEECc
Confidence 78888853
No 490
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=51.24 E-value=2e+02 Score=26.35 Aligned_cols=107 Identities=10% Similarity=0.157 Sum_probs=0.0
Q ss_pred EEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCC
Q 011368 57 ILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND 136 (487)
Q Consensus 57 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d 136 (487)
.++|+.+++.. ..|. .-..+-+| .+|++.++-+..
T Consensus 188 ~vidv~s~evl-----------------------------~~GL-------------smPhSPRW---hdgrLwvldsgt 222 (335)
T TIGR03032 188 CVIDIPSGEVV-----------------------------ASGL-------------SMPHSPRW---YQGKLWLLNSGR 222 (335)
T ss_pred EEEEeCCCCEE-----------------------------EcCc-------------cCCcCCcE---eCCeEEEEECCC
Q ss_pred CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCC
Q 011368 137 KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDC 216 (487)
Q Consensus 137 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 216 (487)
|.+.-+|.++|+...+ ..-.+....++|. |
T Consensus 223 Gev~~vD~~~G~~e~V------------------------------------------------a~vpG~~rGL~f~--G 252 (335)
T TIGR03032 223 GELGYVDPQAGKFQPV------------------------------------------------AFLPGFTRGLAFA--G 252 (335)
T ss_pred CEEEEEcCCCCcEEEE------------------------------------------------EECCCCCccccee--C
Q ss_pred CEEEEe-cC--------------------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 217 ETFVSA-DD--------------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 217 ~~l~s~-~d--------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
.++++| +. .-|.+.|++ .+..+..+ .+++--..+..++.-|.
T Consensus 253 ~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~-tG~vv~~l-----~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 253 DFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLN-SGDVVHWL-----RFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECC-CCCEEEEE-----EeCCceeEEEEEEEecC
No 491
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=50.85 E-value=3.8e+02 Score=29.55 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=37.9
Q ss_pred CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC-CEEEEEeCCCeEEEEEcc
Q 011368 216 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMR 284 (487)
Q Consensus 216 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~dg~i~iwd~~ 284 (487)
.++|..| .-..|.+...+.....+.++ .-....-.++++.|--+|. -.++++..++.|++|-..
T Consensus 1148 knlIl~gDV~ksisfl~fqeep~rlsL~-----srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1148 KNLILAGDVMKSISFLGFQEEPYRLSLL-----SRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhheehhhhhhceEEEEEccCceEEEEe-----ecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 5677777 56666666665333333322 1111223477888877763 356777789999988544
No 492
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=50.64 E-value=1.9e+02 Score=26.11 Aligned_cols=134 Identities=11% Similarity=0.078 Sum_probs=63.6
Q ss_pred CCCceeEEEeCCC-C----CEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCC------------CCCCcEEEEEEec
Q 011368 203 HDFNINSISNNSD-C----ETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD------------DLTEVITSAEFHP 263 (487)
Q Consensus 203 ~~~~v~~i~~s~~-~----~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~v~~v~~~p 263 (487)
..+.+..+.+... + .++..+ ..+.|.++|+. .++..++........+ .....+..++.+|
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~-~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~ 137 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLA-TGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSP 137 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETT-TTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-T
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEcc-CCcEEEEecCCcceeccccceeccCceEecCCCccccccCC
Confidence 3556777777542 1 344444 55689999999 4455555422110000 0122356666655
Q ss_pred ---CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc-ccceeEEEEcCCCCEEEEE-eCCeEEE
Q 011368 264 ---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSR-DYMNLKL 338 (487)
Q Consensus 264 ---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~s~-~d~~i~i 338 (487)
++ +.|+...-.+ -++|.+.+..+.......-.. ...... .-+. ......++++++|.++++- ..+.|..
T Consensus 138 ~~~d~-r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~---~~~~v~-~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~ 211 (287)
T PF03022_consen 138 ISPDG-RWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQA---LASQVQ-DLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGC 211 (287)
T ss_dssp TSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH----HHHT-E-EEEE---SECEEEEETTTEEEEEECCCTEEEE
T ss_pred CCCCc-cEEEEEeCCC-CcEEEEEHHHhhCcccccccc---ccccce-eccccCCCCceEEECCCCcEEEecCCCCeEEE
Confidence 44 5666555433 234444442211100000000 000000 0011 1356778888988777765 4599999
Q ss_pred EeCCC
Q 011368 339 WDIRM 343 (487)
Q Consensus 339 wd~~~ 343 (487)
|+...
T Consensus 212 w~~~~ 216 (287)
T PF03022_consen 212 WDPDG 216 (287)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 99864
No 493
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=49.12 E-value=64 Score=20.54 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.3
Q ss_pred cEEEEEEcCCCCEEEEEec
Q 011368 34 IVSAIEFDKTGDYLAVGDR 52 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~ 52 (487)
.+.+++.-|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4788999999999999963
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=48.45 E-value=56 Score=33.22 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=29.6
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCc
Q 011368 252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 287 (487)
Q Consensus 252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 287 (487)
....++++.-+|.+ +.++.++.||.|++|+.-..+
T Consensus 13 ~~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ccceeeeeeecCCC-ceEEEEecCCcEEEEeecccc
Confidence 34567889999999 999999999999999987654
No 495
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=47.41 E-value=38 Score=19.27 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=16.7
Q ss_pred EEEEEcCCCcEEEEEeCCCCc
Q 011368 384 HFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 384 ~l~sg~~dg~i~iwd~~~~~~ 404 (487)
.+..++.||.|+-.|.++|+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKV 22 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSE
T ss_pred EEEEeCCCCEEEEEECCCCCE
Confidence 355668999999999999844
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=47.35 E-value=2e+02 Score=25.27 Aligned_cols=66 Identities=20% Similarity=0.109 Sum_probs=35.8
Q ss_pred eeEEEEcCCCCEEEEEeC----CeEEEEeCCC-CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368 316 ISDIKFANDGQHLLSRDY----MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 390 (487)
Q Consensus 316 v~~v~~s~~~~~l~s~~d----~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~ 390 (487)
+.+-.+-+||++|.+|.+ ..+++++... ...+-.. ....... .-.+.-++..-|||+.|+.|+.
T Consensus 69 CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~-e~~~~m~----------~~RWYpT~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 69 CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWT-ESPNDMQ----------SGRWYPTATTLPDGRVLIVGGS 137 (243)
T ss_pred ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCce-ECccccc----------CCCccccceECCCCCEEEEeCc
Confidence 344467799999999853 5688887643 1111100 0000000 0001124555679999999988
Q ss_pred CC
Q 011368 391 SN 392 (487)
Q Consensus 391 dg 392 (487)
+.
T Consensus 138 ~~ 139 (243)
T PF07250_consen 138 NN 139 (243)
T ss_pred CC
Confidence 73
No 497
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=47.11 E-value=1.6e+02 Score=31.18 Aligned_cols=46 Identities=7% Similarity=0.133 Sum_probs=32.9
Q ss_pred ccceeEEEEcCCCCEEEEE-eC------CeEEEEeCCCCCceeeeeecccccc
Q 011368 313 IASISDIKFANDGQHLLSR-DY------MNLKLWDIRMDSTPVATFKIHEHLR 358 (487)
Q Consensus 313 ~~~v~~v~~s~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~ 358 (487)
...|..-.|||||+.|+-+ +. ..|++-++.+.+.-+-.+......+
T Consensus 349 ~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aai 401 (912)
T TIGR02171 349 TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAI 401 (912)
T ss_pred CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccc
Confidence 5678889999999999863 21 3589999987665555565555443
No 498
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=46.48 E-value=2e+02 Score=25.20 Aligned_cols=115 Identities=6% Similarity=0.051 Sum_probs=0.0
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC---CeEEE
Q 011368 262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKL 338 (487)
Q Consensus 262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d---~~i~i 338 (487)
+|+. ..+++.-..+.+++||+....+..-..-.+.. ..--....+.-..--|++++| ..|.+
T Consensus 64 ~P~k-S~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NN--------------VDLrygF~LgG~~idiaaASdR~~~~i~~ 128 (364)
T COG4247 64 NPDK-SLVITTVKKAGLRVYDLSGKQLQSVNPGKYNN--------------VDLRYGFQLGGQSIDIAAASDRQNDKIVF 128 (364)
T ss_pred CcCc-ceEEEeeccCCeEEEecCCCeeeecCCCcccc--------------cccccCcccCCeEEEEEecccccCCeEEE
Q ss_pred EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC----EEEEEcCCCcEEEEEe
Q 011368 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL----HFATGSYSNLLRIFSH 399 (487)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~----~l~sg~~dg~i~iwd~ 399 (487)
|.+.-....+..+.....+. ...+.++..+++..+.+ ++.+...+|.|.-|.+
T Consensus 129 y~Idp~~~~L~sitD~n~p~--------ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l 185 (364)
T COG4247 129 YKIDPNPQYLESITDSNAPY--------SSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKL 185 (364)
T ss_pred EEeCCCccceeeccCCCCcc--------ccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEE
No 499
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=45.90 E-value=2.8e+02 Score=26.57 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=74.0
Q ss_pred cceeEEEEcCCCCEEEEEeCCeEE-EEeCCCCCcee-eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 314 ASISDIKFANDGQHLLSRDYMNLK-LWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~d~~i~-iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
+....+..+++|.+++.+..|.+. -||- +... ......... . ++++.+.+++..++++ .+
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~~~~~-----------~---l~~v~~~~dg~l~l~g-~~ 300 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNRASAR-----------R---IQNMGWRADGGLWLLT-RG 300 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC---CCcceEEecCCCcc-----------c---eeeeeEcCCCCEEEEe-CC
Confidence 345667788999999988876543 3443 2221 111111111 1 1488999999887765 44
Q ss_pred CcEEEEEeCCCCc----eeEEEecc--CCccccceEeeCCccccccccceeeecccce-ecCCCCCcc-cc---ccccCC
Q 011368 392 NLLRIFSHGVGSA----GGITVEAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-EL---SYNLSS 460 (487)
Q Consensus 392 g~i~iwd~~~~~~----~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~-~~---~~~~~~ 460 (487)
|.+. +....+.. ...++... ...+..+.+.+ ++.. +++| ..|. .....+... .. ......
T Consensus 301 G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~--d~~~-----~a~G-~~G~v~~s~D~G~tW~~~~~~~~~~~ 371 (398)
T PLN00033 301 GGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS--KKEA-----WAAG-GSGILLRSTDGGKSWKRDKGADNIAA 371 (398)
T ss_pred ceEE-EecCCCCcccccceeecccCCCCcceEEEEEcC--CCcE-----EEEE-CCCcEEEeCCCCcceeEccccCCCCc
Confidence 5543 33333321 11222211 12244555554 3332 3333 3333 222111111 11 123345
Q ss_pred CeEEEEEcCCCCEEEEecCCeEEEE
Q 011368 461 KLLHLAWHPTTNLIACANGNSLFFH 485 (487)
Q Consensus 461 ~v~~~~~spd~~~la~~s~~~~~i~ 485 (487)
.+..+.|.++++.+++|....++-|
T Consensus 372 ~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 372 NLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ceeEEEEcCCCceEEEeCCcEEEEe
Confidence 6779999988888888877666554
No 500
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=45.43 E-value=4.3e+02 Score=28.65 Aligned_cols=138 Identities=12% Similarity=0.112 Sum_probs=77.3
Q ss_pred CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccccc
Q 011368 224 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 303 (487)
Q Consensus 224 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~ 303 (487)
+|.++.|++-..+..++.+. -.+-.+.| .+..|.. .+++ ++....+++||+..++++. ..+..
T Consensus 911 ~g~~ytyk~~~~g~~lellh-----~T~~~~~v--~Ai~~f~-~~~L-agvG~~l~~YdlG~K~lLR----k~e~k---- 973 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLH-----KTEIPGPV--GAICPFQ-GRVL-AGVGRFLRLYDLGKKKLLR----KCELK---- 973 (1205)
T ss_pred CCceEEEEEEecCceeeeee-----ccCCCccc--eEEeccC-CEEE-EecccEEEEeeCChHHHHh----hhhhc----
Confidence 45577777665555444431 11122333 3455766 5444 4456689999999877652 22210
Q ss_pred CccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCC
Q 011368 304 GSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 382 (487)
Q Consensus 304 ~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 382 (487)
.....|..+++. +..++.|+- ..+.++..+...+.+..+.....++ .|+.+.+- |.
T Consensus 974 -------~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR-------------~Vt~~~~l-D~ 1030 (1205)
T KOG1898|consen 974 -------FIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPR-------------HVTALELL-DY 1030 (1205)
T ss_pred -------cCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccc-------------eeeEEEEe-cC
Confidence 012467777765 557777764 5666665555566666666554433 12344333 45
Q ss_pred CEEEEEcCCCcEEEEEeCC
Q 011368 383 LHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 383 ~~l~sg~~dg~i~iwd~~~ 401 (487)
..+|.+..=|.+.+-.+..
T Consensus 1031 ~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1031 DTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CceeeccccCcEEEEECCC
Confidence 5677777767777766653
Done!