Query 011368
Match_columns 487
No_of_seqs 483 out of 2525
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 06:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 100.0 5.3E-49 1.8E-53 381.1 40.8 432 10-487 8-444 (447)
2 1nr0_A Actin interacting prote 100.0 2.9E-45 9.8E-50 367.9 46.3 401 28-487 55-565 (611)
3 1nr0_A Actin interacting prote 100.0 3.8E-44 1.3E-48 359.7 42.8 382 31-486 17-519 (611)
4 3ow8_A WD repeat-containing pr 100.0 1.4E-43 4.9E-48 326.4 41.7 284 28-486 28-318 (321)
5 2ynn_A Coatomer subunit beta'; 100.0 1.8E-43 6.2E-48 323.6 40.5 284 29-486 10-299 (304)
6 1vyh_C Platelet-activating fac 100.0 1.4E-43 4.7E-48 338.2 40.2 282 28-486 104-408 (410)
7 2ymu_A WD-40 repeat protein; u 100.0 6.8E-42 2.3E-46 342.3 46.7 355 29-486 218-577 (577)
8 4gqb_B Methylosome protein 50; 100.0 6.1E-43 2.1E-47 324.5 34.7 261 28-402 26-290 (344)
9 2ymu_A WD-40 repeat protein; u 100.0 7.6E-42 2.6E-46 341.9 44.1 360 28-486 12-413 (577)
10 1got_B GT-beta; complex (GTP-b 100.0 7.8E-42 2.7E-46 317.9 39.9 287 28-486 51-340 (340)
11 4g56_B MGC81050 protein; prote 100.0 1.2E-42 4.2E-47 325.1 33.9 255 28-402 38-302 (357)
12 3frx_A Guanine nucleotide-bind 100.0 5.5E-41 1.9E-45 309.2 41.1 294 28-487 13-315 (319)
13 2pbi_B Guanine nucleotide-bind 100.0 3.7E-41 1.3E-45 314.8 39.8 290 28-486 60-354 (354)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.4E-41 2.9E-45 311.6 41.6 300 30-486 13-332 (345)
15 4ery_A WD repeat-containing pr 100.0 9.5E-40 3.3E-44 300.4 42.4 286 29-487 20-310 (312)
16 2xzm_R RACK1; ribosome, transl 100.0 4.9E-39 1.7E-43 299.5 44.5 301 29-486 18-337 (343)
17 1erj_A Transcriptional repress 100.0 2.3E-40 7.7E-45 314.4 35.5 282 29-423 61-362 (393)
18 2pm9_A Protein WEB1, protein t 100.0 2.8E-41 9.7E-46 323.6 26.6 338 29-487 9-412 (416)
19 3iz6_a 40S ribosomal protein R 100.0 3.2E-40 1.1E-44 311.9 32.7 304 28-449 62-374 (380)
20 3vl1_A 26S proteasome regulato 100.0 7.9E-40 2.7E-44 314.1 34.5 329 33-487 57-417 (420)
21 2hes_X YDR267CP; beta-propelle 100.0 2.2E-39 7.6E-44 300.0 35.4 298 29-448 11-326 (330)
22 1r5m_A SIR4-interacting protei 100.0 1.4E-39 4.8E-44 312.5 35.2 330 27-487 40-423 (425)
23 1pgu_A Actin interacting prote 100.0 2.9E-38 9.9E-43 318.4 45.7 387 29-487 15-612 (615)
24 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-38 3.7E-43 346.7 44.9 372 28-487 611-1156(1249)
25 3iz6_a 40S ribosomal protein R 100.0 1.8E-39 6.3E-44 306.7 31.8 301 90-487 55-373 (380)
26 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-40 1.8E-44 319.8 28.5 341 26-487 127-515 (524)
27 4gqb_B Methylosome protein 50; 100.0 2.8E-38 9.4E-43 293.2 36.1 249 29-402 79-332 (344)
28 3mkq_A Coatomer beta'-subunit; 100.0 3E-38 1E-42 328.8 40.6 324 29-486 10-383 (814)
29 4aow_A Guanine nucleotide-bind 100.0 2E-37 6.7E-42 288.5 41.9 297 28-487 34-335 (340)
30 4e54_B DNA damage-binding prot 100.0 9.1E-39 3.1E-43 307.7 33.2 297 29-487 116-428 (435)
31 1gxr_A ESG1, transducin-like e 100.0 2.3E-38 8E-43 294.3 34.9 322 31-486 8-334 (337)
32 3dm0_A Maltose-binding peripla 100.0 7.5E-38 2.6E-42 319.2 41.7 309 28-487 378-691 (694)
33 2oaj_A Protein SNI1; WD40 repe 100.0 5E-38 1.7E-42 326.5 41.0 385 29-486 55-658 (902)
34 2hes_X YDR267CP; beta-propelle 100.0 9.8E-38 3.4E-42 288.9 35.5 297 90-487 3-326 (330)
35 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-38 1.3E-42 327.5 36.2 395 29-487 14-603 (902)
36 3ow8_A WD repeat-containing pr 100.0 6.2E-38 2.1E-42 288.7 32.9 242 29-400 77-320 (321)
37 2pm7_B Protein transport prote 100.0 1E-37 3.5E-42 284.4 32.6 258 29-402 6-286 (297)
38 1vyh_C Platelet-activating fac 100.0 7.6E-38 2.6E-42 298.5 33.1 243 28-400 146-410 (410)
39 1k8k_C P40, ARP2/3 complex 41 100.0 9.5E-37 3.3E-41 287.6 40.3 329 31-486 7-358 (372)
40 3zwl_B Eukaryotic translation 100.0 1.8E-36 6.3E-41 285.1 40.2 289 27-486 27-343 (369)
41 1got_B GT-beta; complex (GTP-b 100.0 4.8E-37 1.7E-41 285.6 35.3 244 30-398 95-340 (340)
42 3ei3_B DNA damage-binding prot 100.0 1.7E-36 5.8E-41 287.2 37.5 301 28-487 69-380 (383)
43 3frx_A Guanine nucleotide-bind 100.0 1.2E-36 4.2E-41 280.1 34.8 250 29-402 62-318 (319)
44 4g56_B MGC81050 protein; prote 100.0 4.2E-37 1.4E-41 287.6 31.9 252 28-404 90-346 (357)
45 3bg1_A Protein SEC13 homolog; 100.0 2.4E-37 8.4E-42 284.4 28.7 258 29-402 10-294 (316)
46 3sfz_A APAF-1, apoptotic pepti 100.0 8.3E-37 2.8E-41 331.9 37.7 368 29-486 696-1204(1249)
47 3k26_A Polycomb protein EED; W 100.0 7E-36 2.4E-40 280.9 36.3 304 30-487 16-364 (366)
48 1sq9_A Antiviral protein SKI8; 100.0 5.8E-36 2E-40 284.9 35.7 317 29-486 13-392 (397)
49 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-35 5.2E-40 286.4 39.0 307 28-486 114-439 (445)
50 1erj_A Transcriptional repress 100.0 3.9E-36 1.3E-40 285.2 34.2 258 33-402 124-390 (393)
51 1gxr_A ESG1, transducin-like e 100.0 1.6E-35 5.5E-40 275.1 37.7 285 28-447 47-334 (337)
52 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.9E-36 1.7E-40 279.3 34.1 269 29-404 58-338 (345)
53 2ynn_A Coatomer subunit beta'; 100.0 9.2E-36 3.1E-40 272.4 35.1 246 93-448 5-257 (304)
54 3dwl_C Actin-related protein 2 100.0 2.2E-37 7.6E-42 292.6 25.1 261 31-401 10-281 (377)
55 3gre_A Serine/threonine-protei 100.0 7E-36 2.4E-40 288.1 35.9 345 29-486 60-437 (437)
56 3i2n_A WD repeat-containing pr 100.0 3.4E-36 1.2E-40 282.1 32.0 304 30-486 16-350 (357)
57 3jrp_A Fusion protein of prote 100.0 1.1E-35 3.7E-40 281.0 35.4 259 28-403 7-289 (379)
58 3v7d_B Cell division control p 100.0 3.7E-35 1.3E-39 285.3 39.8 316 28-483 117-456 (464)
59 2pm9_A Protein WEB1, protein t 100.0 5.1E-36 1.8E-40 287.1 33.1 310 25-449 60-413 (416)
60 2xzm_R RACK1; ribosome, transl 100.0 1.4E-35 4.7E-40 276.2 34.0 256 28-402 72-341 (343)
61 2pbi_B Guanine nucleotide-bind 100.0 1.7E-35 5.7E-40 276.5 33.8 247 30-398 104-354 (354)
62 4h5i_A Guanine nucleotide-exch 100.0 2.3E-35 7.7E-40 276.6 31.5 310 33-463 15-356 (365)
63 2j04_A TAU60, YPL007P, hypothe 100.0 7.1E-36 2.4E-40 283.3 27.4 296 32-478 15-349 (588)
64 3odt_A Protein DOA1; ubiquitin 100.0 4.2E-34 1.4E-38 262.7 38.4 258 29-422 15-275 (313)
65 1r5m_A SIR4-interacting protei 100.0 1.3E-34 4.3E-39 278.0 33.4 293 31-448 107-423 (425)
66 4aez_A CDC20, WD repeat-contai 100.0 1.9E-34 6.6E-39 274.6 34.1 254 35-422 96-358 (401)
67 3f3f_A Nucleoporin SEH1; struc 100.0 3.9E-34 1.3E-38 266.8 35.2 272 29-404 8-340 (351)
68 4a11_B DNA excision repair pro 100.0 4.4E-34 1.5E-38 272.7 36.1 346 29-486 40-402 (408)
69 2pm7_B Protein transport prote 100.0 4.9E-34 1.7E-38 260.1 34.3 253 95-486 3-282 (297)
70 1yfq_A Cell cycle arrest prote 100.0 2.4E-34 8.2E-39 267.9 32.9 285 30-443 9-315 (342)
71 4gga_A P55CDC, cell division c 100.0 1.5E-33 5.2E-38 270.0 37.5 281 34-450 107-395 (420)
72 4ery_A WD repeat-containing pr 100.0 1.8E-33 6.1E-38 258.5 35.9 246 29-400 62-311 (312)
73 3vl1_A 26S proteasome regulato 100.0 3E-33 1E-37 268.2 37.0 285 33-448 98-417 (420)
74 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-33 7.7E-38 292.1 38.9 365 30-486 53-457 (814)
75 3jro_A Fusion protein of prote 100.0 1E-34 3.5E-39 297.7 27.4 258 29-403 6-287 (753)
76 3dm0_A Maltose-binding peripla 100.0 9.2E-34 3.1E-38 289.0 34.3 260 28-400 426-692 (694)
77 3mmy_A MRNA export factor; mRN 100.0 3.8E-33 1.3E-37 262.3 35.1 290 29-443 36-338 (368)
78 4ggc_A P55CDC, cell division c 100.0 1.3E-32 4.5E-37 253.4 36.4 280 34-449 27-314 (318)
79 4aez_A CDC20, WD repeat-contai 100.0 4.1E-33 1.4E-37 265.4 33.9 250 31-412 133-391 (401)
80 4gga_A P55CDC, cell division c 100.0 5.9E-33 2E-37 265.9 32.7 247 29-402 144-396 (420)
81 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-32 4.7E-37 264.7 35.2 272 30-449 131-413 (435)
82 4h5i_A Guanine nucleotide-exch 100.0 4.3E-33 1.5E-37 261.1 28.6 255 30-402 71-344 (365)
83 4aow_A Guanine nucleotide-bind 100.0 5.2E-32 1.8E-36 251.8 35.3 254 29-403 83-339 (340)
84 3bg1_A Protein SEC13 homolog; 100.0 1.8E-33 6.2E-38 258.6 25.1 250 95-447 7-290 (316)
85 3v7d_B Cell division control p 100.0 3.3E-32 1.1E-36 264.5 34.9 294 30-443 160-455 (464)
86 3k26_A Polycomb protein EED; W 100.0 1.6E-33 5.6E-38 264.7 24.1 263 31-401 68-366 (366)
87 4a11_B DNA excision repair pro 100.0 2.4E-32 8.3E-37 260.7 32.4 312 94-486 36-362 (408)
88 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-32 5E-37 258.9 30.0 253 30-404 50-364 (372)
89 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-33 7.6E-38 273.2 24.8 297 30-449 205-516 (524)
90 1sq9_A Antiviral protein SKI8; 100.0 3.7E-32 1.3E-36 258.6 32.5 293 28-402 58-396 (397)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-32 6.7E-37 260.9 30.5 289 34-447 36-339 (402)
92 3i2n_A WD repeat-containing pr 100.0 3.1E-32 1.1E-36 255.1 30.4 257 28-402 61-354 (357)
93 4gq1_A NUP37; propeller, trans 100.0 2.6E-32 9E-37 258.7 29.7 261 125-486 99-386 (393)
94 1yfq_A Cell cycle arrest prote 100.0 3.7E-32 1.3E-36 253.1 30.2 268 114-482 12-315 (342)
95 1pgu_A Actin interacting prote 100.0 1.2E-31 4.1E-36 270.0 35.9 329 30-448 201-612 (615)
96 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-31 4.3E-36 249.8 32.4 302 95-486 5-334 (351)
97 3gre_A Serine/threonine-protei 100.0 9.1E-33 3.1E-37 266.3 25.1 283 93-487 54-357 (437)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.4E-31 2.9E-35 253.3 38.8 216 114-399 103-337 (450)
99 3jrp_A Fusion protein of prote 100.0 2.2E-31 7.6E-36 251.4 33.3 255 94-486 4-284 (379)
100 3zwl_B Eukaryotic translation 100.0 4.6E-31 1.6E-35 248.2 35.1 254 29-402 71-347 (369)
101 3ei3_B DNA damage-binding prot 100.0 1.5E-31 5.2E-36 253.1 30.8 253 30-401 116-382 (383)
102 3dwl_C Actin-related protein 2 100.0 1.2E-32 4.2E-37 260.0 22.7 248 114-486 12-278 (377)
103 4e54_B DNA damage-binding prot 100.0 1.4E-32 4.9E-37 264.4 22.5 263 28-404 160-433 (435)
104 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-30 4.4E-35 243.5 34.0 249 29-402 16-272 (355)
105 2xyi_A Probable histone-bindin 100.0 4.4E-31 1.5E-35 253.6 31.1 267 27-402 123-411 (430)
106 2xyi_A Probable histone-bindin 100.0 1.6E-30 5.5E-35 249.6 33.1 274 111-486 126-407 (430)
107 4ggc_A P55CDC, cell division c 100.0 1.5E-30 5.3E-35 239.5 31.6 247 29-402 64-316 (318)
108 3odt_A Protein DOA1; ubiquitin 100.0 3.9E-30 1.3E-34 236.2 33.5 241 28-404 55-299 (313)
109 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9E-30 3.1E-34 245.9 37.4 265 29-443 156-430 (445)
110 3lrv_A PRE-mRNA-splicing facto 100.0 7.3E-31 2.5E-35 244.3 27.5 246 39-404 43-295 (343)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-30 5.4E-35 247.7 30.3 263 28-407 77-348 (402)
112 3dw8_B Serine/threonine-protei 100.0 8.5E-31 2.9E-35 253.3 27.2 248 113-414 28-328 (447)
113 2j04_A TAU60, YPL007P, hypothe 100.0 6.7E-31 2.3E-35 249.3 24.1 262 111-486 13-294 (588)
114 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-29 4.2E-34 244.1 32.8 264 114-487 134-412 (435)
115 4gq1_A NUP37; propeller, trans 100.0 1.5E-30 5.1E-35 246.6 22.3 266 31-400 88-388 (393)
116 3jro_A Fusion protein of prote 100.0 7.6E-30 2.6E-34 261.6 29.1 251 95-448 3-283 (753)
117 3bws_A Protein LP49; two-domai 100.0 1.4E-28 4.8E-33 236.7 33.1 280 31-486 121-429 (433)
118 1l0q_A Surface layer protein; 100.0 4.8E-27 1.7E-31 222.8 38.2 309 29-477 28-365 (391)
119 3mmy_A MRNA export factor; mRN 100.0 2.7E-28 9.1E-33 229.2 28.3 259 28-401 82-346 (368)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.2E-28 2.4E-32 232.8 31.9 259 30-402 100-392 (450)
121 1l0q_A Surface layer protein; 100.0 7.4E-27 2.5E-31 221.5 35.3 224 45-403 3-235 (391)
122 3lrv_A PRE-mRNA-splicing facto 100.0 5.7E-28 1.9E-32 224.8 23.6 259 125-481 46-324 (343)
123 2w18_A PALB2, fancn, partner a 100.0 1.3E-26 4.6E-31 206.6 31.2 271 35-399 42-355 (356)
124 2ecf_A Dipeptidyl peptidase IV 100.0 1.6E-26 5.5E-31 237.8 32.5 332 32-486 36-456 (741)
125 1nir_A Nitrite reductase; hemo 100.0 6.9E-26 2.3E-30 222.3 34.3 321 39-487 144-512 (543)
126 3bws_A Protein LP49; two-domai 100.0 7.5E-26 2.6E-30 217.6 31.9 239 30-401 167-432 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.5E-27 2.6E-31 222.4 23.0 301 32-472 62-410 (415)
128 3vu4_A KMHSV2; beta-propeller 99.9 1.5E-24 5.3E-29 202.3 30.5 270 94-486 12-333 (355)
129 1k32_A Tricorn protease; prote 99.9 5.6E-24 1.9E-28 226.3 35.7 355 27-480 47-492 (1045)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.2E-24 2.1E-28 202.3 32.3 243 44-424 143-408 (415)
131 1xfd_A DIP, dipeptidyl aminope 99.9 7.4E-25 2.5E-29 224.8 27.4 329 34-478 18-428 (723)
132 2w18_A PALB2, fancn, partner a 99.9 1.2E-23 4.2E-28 187.6 28.1 278 116-447 42-354 (356)
133 2z3z_A Dipeptidyl aminopeptida 99.9 1E-23 3.5E-28 215.6 29.7 289 114-487 82-433 (706)
134 1k32_A Tricorn protease; prote 99.9 1.8E-23 6.1E-28 222.4 32.2 357 29-487 200-635 (1045)
135 3u4y_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 183.6 33.8 236 38-403 3-254 (331)
136 1nir_A Nitrite reductase; hemo 99.9 9.5E-22 3.3E-26 192.9 36.3 308 34-412 180-524 (543)
137 2ojh_A Uncharacterized protein 99.9 2.5E-23 8.6E-28 188.9 23.4 225 49-403 17-260 (297)
138 3vgz_A Uncharacterized protein 99.9 9.4E-22 3.2E-26 183.5 31.2 254 30-403 38-305 (353)
139 1ri6_A Putative isomerase YBHE 99.9 2.1E-21 7.2E-26 180.2 33.1 280 28-423 33-332 (343)
140 2ecf_A Dipeptidyl peptidase IV 99.9 6.5E-22 2.2E-26 203.5 30.5 308 114-486 37-410 (741)
141 1ri6_A Putative isomerase YBHE 99.9 4.5E-21 1.5E-25 178.1 31.3 212 114-401 38-262 (343)
142 1z68_A Fibroblast activation p 99.9 3.6E-22 1.2E-26 204.6 25.5 318 37-478 20-428 (719)
143 1xfd_A DIP, dipeptidyl aminope 99.9 5.4E-22 1.8E-26 203.5 24.8 290 114-486 17-390 (723)
144 2ojh_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 174.8 26.7 234 28-392 37-293 (297)
145 3hfq_A Uncharacterized protein 99.9 9.1E-21 3.1E-25 176.4 30.0 266 30-400 37-316 (347)
146 3u4y_A Uncharacterized protein 99.9 8.5E-21 2.9E-25 175.4 29.1 253 32-402 40-305 (331)
147 2z3z_A Dipeptidyl aminopeptida 99.9 4.8E-21 1.6E-25 195.9 27.5 280 33-429 82-414 (706)
148 3o4h_A Acylamino-acid-releasin 99.9 5.2E-21 1.8E-25 191.0 26.1 263 114-486 22-312 (582)
149 3hfq_A Uncharacterized protein 99.9 2.1E-19 7.3E-24 167.2 34.8 216 114-401 40-271 (347)
150 3o4h_A Acylamino-acid-releasin 99.9 7E-21 2.4E-25 190.0 25.1 271 32-446 21-309 (582)
151 1pby_B Quinohemoprotein amine 99.9 2.1E-20 7.2E-25 173.0 24.0 265 128-487 2-308 (337)
152 4a5s_A Dipeptidyl peptidase 4 99.9 1.4E-19 4.9E-24 185.4 30.6 323 34-479 18-435 (740)
153 1jmx_B Amine dehydrogenase; ox 99.9 6.4E-20 2.2E-24 170.7 25.1 258 37-410 4-333 (349)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 3.6E-19 1.2E-23 170.0 30.6 229 29-342 89-332 (434)
155 3scy_A Hypothetical bacterial 99.9 1.4E-18 4.7E-23 162.6 33.7 267 31-400 48-336 (361)
156 1pby_B Quinohemoprotein amine 99.9 3.9E-19 1.3E-23 164.4 28.6 250 45-412 2-320 (337)
157 3scy_A Hypothetical bacterial 99.9 1.8E-18 6.2E-23 161.8 33.0 212 114-400 50-290 (361)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 4.3E-19 1.5E-23 169.4 29.1 229 32-343 36-278 (434)
159 3pe7_A Oligogalacturonate lyas 99.8 3.9E-19 1.3E-23 168.1 25.3 239 38-403 41-331 (388)
160 3vgz_A Uncharacterized protein 99.8 2.6E-18 9E-23 160.1 29.5 240 32-392 88-335 (353)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.2E-18 1.1E-22 160.2 27.6 257 33-402 40-342 (365)
162 1z68_A Fibroblast activation p 99.8 8.9E-19 3E-23 179.4 20.9 271 117-479 19-375 (719)
163 3azo_A Aminopeptidase; POP fam 99.8 1.2E-17 4.1E-22 169.4 28.0 297 30-446 21-363 (662)
164 1jmx_B Amine dehydrogenase; ox 99.8 7.3E-18 2.5E-22 156.7 23.7 163 124-353 8-184 (349)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.3E-16 4.5E-21 149.2 31.2 238 114-423 40-316 (365)
166 4a5s_A Dipeptidyl peptidase 4 99.8 9.2E-17 3.2E-21 164.6 30.1 283 114-478 17-381 (740)
167 1q7f_A NHL, brain tumor CG1071 99.8 3.4E-16 1.2E-20 141.2 30.2 261 12-402 11-281 (286)
168 3c5m_A Oligogalacturonate lyas 99.8 4.6E-17 1.6E-21 154.2 20.9 257 33-403 36-331 (396)
169 2dg1_A DRP35, lactonase; beta 99.7 8.5E-16 2.9E-20 141.9 26.8 244 33-400 6-262 (333)
170 3fvz_A Peptidyl-glycine alpha- 99.7 2.4E-15 8.3E-20 138.4 29.1 259 33-402 24-323 (329)
171 2oiz_A Aromatic amine dehydrog 99.7 1.5E-14 5.1E-19 134.6 29.5 305 43-472 14-360 (361)
172 3pe7_A Oligogalacturonate lyas 99.7 5E-16 1.7E-20 146.7 19.6 251 34-400 82-381 (388)
173 3azo_A Aminopeptidase; POP fam 99.7 2.8E-15 9.5E-20 152.0 26.0 225 209-486 81-366 (662)
174 1q7f_A NHL, brain tumor CG1071 99.7 1.5E-13 5.2E-18 123.7 32.9 243 114-486 30-277 (286)
175 3e5z_A Putative gluconolactona 99.7 2.5E-14 8.4E-19 129.6 26.6 241 31-402 26-287 (296)
176 2oiz_A Aromatic amine dehydrog 99.7 5.1E-14 1.7E-18 131.1 27.7 276 37-423 54-357 (361)
177 2z2n_A Virginiamycin B lyase; 99.7 2.3E-12 8E-17 116.5 38.2 238 32-399 14-253 (299)
178 3fvz_A Peptidyl-glycine alpha- 99.7 1.5E-13 5.1E-18 126.4 29.8 258 114-486 24-319 (329)
179 2xdw_A Prolyl endopeptidase; a 99.7 6E-14 2.1E-18 143.1 28.4 247 32-403 124-416 (710)
180 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-12 4.7E-17 127.7 36.7 317 42-486 165-535 (567)
181 2xdw_A Prolyl endopeptidase; a 99.6 6.9E-14 2.4E-18 142.7 28.3 239 202-486 122-411 (710)
182 2gop_A Trilobed protease; beta 99.6 2.2E-13 7.6E-18 126.3 26.9 240 31-423 13-311 (347)
183 1rwi_B Serine/threonine-protei 99.6 2.3E-13 8E-18 121.3 26.0 238 34-402 25-265 (270)
184 2bkl_A Prolyl endopeptidase; m 99.6 5.7E-14 2E-18 142.8 24.3 248 31-404 119-400 (695)
185 3e5z_A Putative gluconolactona 99.6 3.7E-13 1.2E-17 121.9 27.2 195 114-400 28-245 (296)
186 2dg1_A DRP35, lactonase; beta 99.6 1.5E-12 5.2E-17 119.9 31.4 245 31-392 43-301 (333)
187 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-13 3.7E-18 140.8 24.6 238 201-486 117-394 (695)
188 3c5m_A Oligogalacturonate lyas 99.6 2.1E-14 7.2E-19 135.8 18.1 163 202-400 185-381 (396)
189 2gop_A Trilobed protease; beta 99.6 2.4E-13 8.4E-18 126.0 25.0 231 33-414 59-341 (347)
190 3no2_A Uncharacterized protein 99.6 2.5E-12 8.6E-17 114.5 28.5 249 42-412 3-262 (276)
191 1qks_A Cytochrome CD1 nitrite 99.6 1.6E-11 5.5E-16 120.1 36.2 309 32-411 196-547 (567)
192 2qc5_A Streptogramin B lactona 99.6 5E-11 1.7E-15 107.8 35.8 237 32-399 19-258 (300)
193 3dsm_A Uncharacterized protein 99.6 2.7E-12 9.2E-17 117.8 26.9 199 114-403 44-255 (328)
194 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.8E-11 6.3E-16 111.5 29.4 246 34-402 19-300 (314)
195 3no2_A Uncharacterized protein 99.5 9.2E-12 3.1E-16 110.8 26.2 199 125-411 3-204 (276)
196 1yr2_A Prolyl oligopeptidase; 99.5 2.4E-12 8.1E-17 131.9 23.5 244 33-403 163-443 (741)
197 1yr2_A Prolyl oligopeptidase; 99.5 5.3E-12 1.8E-16 129.3 25.7 237 202-486 160-438 (741)
198 3dsm_A Uncharacterized protein 99.5 1.1E-11 3.7E-16 113.8 25.1 247 33-410 44-309 (328)
199 1rwi_B Serine/threonine-protei 99.5 5.1E-11 1.7E-15 106.0 28.6 197 115-402 25-223 (270)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.6E-11 1.2E-15 109.6 27.3 204 114-402 18-257 (314)
201 3g4e_A Regucalcin; six bladed 99.5 1.6E-10 5.4E-15 104.4 29.1 232 34-390 14-261 (297)
202 2z2n_A Virginiamycin B lyase; 99.4 9.7E-10 3.3E-14 99.2 32.9 239 32-402 56-296 (299)
203 2mad_H Methylamine dehydrogena 99.4 7.5E-10 2.6E-14 102.9 32.0 256 37-405 70-354 (373)
204 3sjl_D Methylamine dehydrogena 99.4 2.7E-10 9.4E-15 104.5 27.5 248 38-404 38-323 (386)
205 3hrp_A Uncharacterized protein 99.4 3.4E-10 1.2E-14 106.8 28.8 271 32-400 130-409 (409)
206 3g4e_A Regucalcin; six bladed 99.4 1.6E-09 5.6E-14 97.7 30.7 220 114-422 13-249 (297)
207 2mad_H Methylamine dehydrogena 99.4 3.6E-09 1.2E-13 98.4 33.4 252 39-403 27-309 (373)
208 3dr2_A Exported gluconolactona 99.4 5.3E-10 1.8E-14 101.4 26.4 233 29-392 41-298 (305)
209 1xip_A Nucleoporin NUP159; bet 99.4 1E-11 3.4E-16 114.5 14.6 189 33-330 38-230 (388)
210 3iuj_A Prolyl endopeptidase; h 99.4 1.1E-10 3.6E-15 118.5 23.5 245 31-403 127-407 (693)
211 3dr2_A Exported gluconolactona 99.3 9E-10 3.1E-14 99.9 25.1 235 201-486 41-303 (305)
212 2qc5_A Streptogramin B lactona 99.3 1.1E-08 3.7E-13 92.3 31.3 236 33-400 62-299 (300)
213 2ghs_A AGR_C_1268P; regucalcin 99.3 5.5E-09 1.9E-13 95.6 29.5 229 35-390 51-291 (326)
214 3hrp_A Uncharacterized protein 99.3 4.3E-09 1.5E-13 99.3 29.0 216 114-402 131-355 (409)
215 2ghs_A AGR_C_1268P; regucalcin 99.3 4.4E-09 1.5E-13 96.2 28.1 191 116-399 51-258 (326)
216 3sjl_D Methylamine dehydrogena 99.3 2.8E-09 9.6E-14 97.8 26.2 262 37-410 82-371 (386)
217 1xip_A Nucleoporin NUP159; bet 99.3 2.9E-10 9.8E-15 104.9 19.4 190 114-387 38-230 (388)
218 2qe8_A Uncharacterized protein 99.2 1.1E-08 3.9E-13 94.2 27.8 263 33-397 17-317 (343)
219 2ece_A 462AA long hypothetical 99.2 1.8E-08 6.1E-13 93.1 28.4 265 39-389 88-399 (462)
220 3c75_H MADH, methylamine dehyd 99.2 1E-08 3.5E-13 95.9 26.8 70 318-404 323-405 (426)
221 2qe8_A Uncharacterized protein 99.2 1.7E-08 5.6E-13 93.1 27.1 225 114-402 17-279 (343)
222 3iuj_A Prolyl endopeptidase; h 99.1 8.7E-09 3E-13 104.5 22.9 237 201-486 125-402 (693)
223 3c75_H MADH, methylamine dehyd 99.1 1.1E-08 3.9E-13 95.6 20.3 251 37-351 122-409 (426)
224 1mda_H Methylamine dehydrogena 99.1 1.8E-08 6.3E-13 92.6 21.0 77 319-413 269-357 (368)
225 1npe_A Nidogen, entactin; glyc 99.0 2.5E-06 8.6E-11 75.3 31.8 217 114-424 36-261 (267)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.1E-07 7.2E-12 86.9 24.3 194 126-404 102-299 (376)
227 4a2l_A BT_4663, two-component 98.9 1.6E-05 5.4E-10 82.1 38.6 334 35-486 175-523 (795)
228 1kb0_A Quinohemoprotein alcoho 98.9 3.4E-07 1.2E-11 92.1 25.3 192 207-423 245-529 (677)
229 2ece_A 462AA long hypothetical 98.9 7.6E-07 2.6E-11 82.4 24.2 172 206-402 139-353 (462)
230 2hz6_A Endoplasmic reticulum t 98.9 1.4E-09 4.9E-14 101.2 6.3 189 43-353 8-201 (369)
231 1yiq_A Quinohemoprotein alcoho 98.9 9E-07 3.1E-11 89.2 26.1 200 208-429 238-531 (689)
232 2hz6_A Endoplasmic reticulum t 98.8 8.2E-10 2.8E-14 102.8 3.0 186 126-410 8-200 (369)
233 1mda_H Methylamine dehydrogena 98.8 9.1E-08 3.1E-12 88.0 16.4 250 37-357 69-359 (368)
234 1npe_A Nidogen, entactin; glyc 98.8 2.8E-05 9.7E-10 68.5 29.7 218 34-383 37-263 (267)
235 1yiq_A Quinohemoprotein alcoho 98.8 6.3E-06 2.1E-10 83.1 28.2 200 258-478 239-537 (689)
236 1kb0_A Quinohemoprotein alcoho 98.8 3.9E-06 1.3E-10 84.4 26.2 198 257-475 246-535 (677)
237 4a2l_A BT_4663, two-component 98.7 0.00018 6.3E-09 74.1 38.6 342 32-486 214-568 (795)
238 2p4o_A Hypothetical protein; p 98.7 5.6E-05 1.9E-09 68.1 29.6 235 33-392 32-279 (306)
239 2iwa_A Glutamine cyclotransfer 98.6 7.3E-06 2.5E-10 71.1 21.2 209 116-402 23-238 (266)
240 1fwx_A Nitrous oxide reductase 98.6 6.8E-06 2.3E-10 78.9 22.7 147 214-402 99-309 (595)
241 1fwx_A Nitrous oxide reductase 98.6 2.1E-06 7E-11 82.5 19.1 215 126-415 100-384 (595)
242 2fp8_A Strictosidine synthase; 98.6 3.5E-05 1.2E-09 70.0 26.9 254 34-402 20-314 (322)
243 3hxj_A Pyrrolo-quinoline quino 98.6 2.5E-06 8.5E-11 77.9 19.2 211 216-485 107-320 (330)
244 2iwa_A Glutamine cyclotransfer 98.6 2E-05 6.8E-10 68.4 22.9 209 34-343 22-237 (266)
245 3q7m_A Lipoprotein YFGL, BAMB; 98.6 4.1E-05 1.4E-09 71.2 26.4 199 127-411 143-346 (376)
246 3hxj_A Pyrrolo-quinoline quino 98.5 2.7E-06 9.1E-11 77.7 16.8 219 206-486 61-281 (330)
247 2p4o_A Hypothetical protein; p 98.5 0.00023 7.9E-09 64.0 28.5 203 114-400 32-241 (306)
248 3v9f_A Two-component system se 98.5 0.00058 2E-08 70.2 34.8 248 204-486 257-521 (781)
249 3v65_B Low-density lipoprotein 98.5 0.00055 1.9E-08 63.7 31.5 199 114-404 116-321 (386)
250 3qqz_A Putative uncharacterize 98.5 0.00046 1.6E-08 59.5 29.9 220 114-399 27-251 (255)
251 3v64_C Agrin; beta propeller, 98.5 0.00076 2.6E-08 61.8 32.1 200 114-404 73-278 (349)
252 3nol_A Glutamine cyclotransfer 98.5 7.7E-05 2.6E-09 63.9 22.0 197 114-390 43-244 (262)
253 3nol_A Glutamine cyclotransfer 98.4 7.7E-05 2.6E-09 63.9 21.8 157 205-403 43-203 (262)
254 1kv9_A Type II quinohemoprotei 98.4 7.8E-05 2.7E-09 74.9 24.9 185 208-412 233-498 (668)
255 3nok_A Glutaminyl cyclase; bet 98.4 6.6E-05 2.3E-09 64.3 20.0 197 114-389 55-253 (268)
256 3mbr_X Glutamine cyclotransfer 98.4 0.00028 9.5E-09 59.9 23.7 210 90-390 8-223 (243)
257 3qqz_A Putative uncharacterize 98.4 0.00036 1.2E-08 60.1 24.7 218 33-341 27-251 (255)
258 3nok_A Glutaminyl cyclase; bet 98.4 5.8E-05 2E-09 64.7 19.3 157 204-403 54-212 (268)
259 2xe4_A Oligopeptidase B; hydro 98.4 0.00029 1E-08 71.9 27.9 158 34-285 175-354 (751)
260 3mbr_X Glutamine cyclotransfer 98.3 0.0003 1E-08 59.7 23.0 158 204-403 20-181 (243)
261 3v9f_A Two-component system se 98.3 0.0045 1.5E-07 63.6 38.1 340 33-486 211-565 (781)
262 3tc9_A Hypothetical hydrolase; 98.3 0.00093 3.2E-08 63.1 27.9 184 206-400 227-429 (430)
263 2ad6_A Methanol dehydrogenase 98.3 0.00024 8.2E-09 69.8 24.7 61 334-412 444-504 (571)
264 4hw6_A Hypothetical protein, I 98.3 0.0015 5.3E-08 61.6 28.5 184 205-400 228-432 (433)
265 2fp8_A Strictosidine synthase; 98.2 0.0012 4.1E-08 59.7 25.4 215 115-399 20-267 (322)
266 2xe4_A Oligopeptidase B; hydro 98.1 0.00029 9.8E-09 71.9 22.3 117 202-343 170-304 (751)
267 1kv9_A Type II quinohemoprotei 98.1 0.0016 5.4E-08 65.4 27.1 84 258-351 234-340 (668)
268 1k3i_A Galactose oxidase precu 98.1 0.00063 2.2E-08 68.3 23.8 34 117-152 246-280 (656)
269 1w6s_A Methanol dehydrogenase 98.1 0.0011 3.7E-08 65.2 23.6 31 381-412 483-513 (599)
270 1k3i_A Galactose oxidase precu 98.0 0.0016 5.4E-08 65.4 25.1 75 205-287 243-325 (656)
271 1flg_A Protein (quinoprotein e 98.0 0.0015 5.2E-08 64.2 23.6 62 334-413 466-527 (582)
272 4hw6_A Hypothetical protein, I 98.0 0.012 4.1E-07 55.5 28.0 210 115-399 140-372 (433)
273 3kya_A Putative phosphatase; s 98.0 0.012 4.1E-07 55.8 27.5 164 115-342 140-340 (496)
274 3amr_A 3-phytase; beta-propell 98.0 0.0049 1.7E-07 55.3 23.4 159 224-409 98-271 (355)
275 3p5b_L Low density lipoprotein 97.9 0.015 5.1E-07 54.2 32.7 161 203-405 157-324 (400)
276 3v65_B Low-density lipoprotein 97.9 0.0087 3E-07 55.6 25.1 206 32-352 115-326 (386)
277 1ijq_A LDL receptor, low-densi 97.9 0.014 4.8E-07 52.5 33.9 158 205-404 77-241 (316)
278 2ad6_A Methanol dehydrogenase 97.9 0.012 4.1E-07 57.8 26.9 26 127-152 115-140 (571)
279 3ei3_A DNA damage-binding prot 97.8 0.049 1.7E-06 57.9 35.0 33 32-64 553-592 (1158)
280 3v64_C Agrin; beta propeller, 97.8 0.019 6.4E-07 52.5 26.9 203 33-351 73-282 (349)
281 3m0c_C LDL receptor, low-densi 97.8 0.045 1.5E-06 55.6 33.1 163 203-406 469-637 (791)
282 3kya_A Putative phosphatase; s 97.8 0.03 1E-06 53.2 27.6 186 207-402 249-476 (496)
283 2xbg_A YCF48-like protein; pho 97.7 0.024 8.1E-07 51.2 32.7 151 205-394 122-272 (327)
284 3sov_A LRP-6, low-density lipo 97.7 0.025 8.7E-07 50.8 29.6 200 114-404 35-241 (318)
285 1w6s_A Methanol dehydrogenase 97.6 0.033 1.1E-06 54.8 26.1 85 258-352 245-350 (599)
286 1flg_A Protein (quinoprotein e 97.6 0.069 2.4E-06 52.4 33.3 26 127-152 117-142 (582)
287 2xbg_A YCF48-like protein; pho 97.6 0.041 1.4E-06 49.7 29.6 158 203-398 161-319 (327)
288 1ijq_A LDL receptor, low-densi 97.6 0.04 1.4E-06 49.4 27.9 210 32-351 29-245 (316)
289 3sov_A LRP-6, low-density lipo 97.5 0.04 1.4E-06 49.4 23.4 205 33-352 35-246 (318)
290 3tc9_A Hypothetical hydrolase; 97.5 0.007 2.4E-07 57.1 18.9 155 205-401 137-301 (430)
291 3sre_A PON1, serum paraoxonase 97.5 0.02 6.9E-07 51.9 20.4 167 204-401 49-252 (355)
292 2ism_A Putative oxidoreductase 97.5 0.04 1.4E-06 50.3 22.5 115 204-331 30-152 (352)
293 4a0p_A LRP6, LRP-6, low-densit 97.5 0.11 3.7E-06 51.5 34.0 197 114-404 37-240 (628)
294 3m0c_C LDL receptor, low-densi 97.4 0.11 3.7E-06 52.8 27.4 202 32-343 423-632 (791)
295 1n7d_A LDL receptor, low-densi 97.4 0.0026 9E-08 64.0 15.3 157 206-404 454-617 (699)
296 3p5b_L Low density lipoprotein 97.4 0.083 2.8E-06 49.2 28.2 211 32-352 111-328 (400)
297 2p9w_A MAL S 1 allergenic prot 97.4 0.036 1.2E-06 49.2 20.0 173 115-343 14-215 (334)
298 2p9w_A MAL S 1 allergenic prot 97.3 0.067 2.3E-06 47.5 20.9 182 202-402 10-216 (334)
299 1n7d_A LDL receptor, low-densi 97.2 0.0039 1.3E-07 62.8 13.3 122 205-352 496-622 (699)
300 3sre_A PON1, serum paraoxonase 97.1 0.15 5.3E-06 46.1 25.4 153 206-399 113-296 (355)
301 2ism_A Putative oxidoreductase 97.1 0.18 6E-06 46.0 27.4 27 33-60 31-57 (352)
302 3a9g_A Putative uncharacterize 97.1 0.18 6.1E-06 46.0 25.5 27 33-60 29-55 (354)
303 3s94_A LRP-6, low-density lipo 97.0 0.32 1.1E-05 48.1 27.4 155 205-404 84-246 (619)
304 3pbp_A Nucleoporin NUP82; beta 96.8 0.18 6.2E-06 46.3 19.2 166 212-397 28-208 (452)
305 3amr_A 3-phytase; beta-propell 96.8 0.28 9.6E-06 44.0 24.7 133 205-354 128-274 (355)
306 3das_A Putative oxidoreductase 96.8 0.29 1E-05 44.1 26.2 118 202-331 29-157 (347)
307 3s25_A Hypothetical 7-bladed b 96.6 0.3 1E-05 43.3 19.5 136 211-400 110-254 (302)
308 3pbp_A Nucleoporin NUP82; beta 96.6 0.4 1.4E-05 44.1 22.1 114 263-402 30-159 (452)
309 3a9g_A Putative uncharacterize 96.5 0.12 4E-06 47.2 16.7 114 204-331 28-152 (354)
310 1cru_A Protein (soluble quinop 96.2 0.48 1.6E-05 44.8 19.1 118 204-332 26-162 (454)
311 2g8s_A Glucose/sorbosone dehyd 96.2 0.73 2.5E-05 41.9 28.3 30 114-145 18-47 (353)
312 2xzh_A Clathrin heavy chain 1; 96.1 0.66 2.3E-05 41.0 29.0 214 124-416 75-304 (365)
313 3s94_A LRP-6, low-density lipo 96.1 1.3 4.3E-05 43.8 39.9 203 32-287 39-245 (619)
314 4a0p_A LRP6, LRP-6, low-densit 96.0 1.4 4.9E-05 43.5 44.2 200 33-287 37-239 (628)
315 1tl2_A L10, protein (tachylect 96.0 0.18 6.2E-06 41.7 12.8 112 205-340 41-160 (236)
316 2g8s_A Glucose/sorbosone dehyd 95.7 1.2 4.1E-05 40.4 28.9 28 34-61 19-46 (353)
317 1tl2_A L10, protein (tachylect 95.5 0.67 2.3E-05 38.4 14.6 116 255-395 42-157 (236)
318 2vpj_A Kelch-like protein 12; 95.5 1.2 4.2E-05 39.1 21.1 147 215-403 112-280 (301)
319 2xzh_A Clathrin heavy chain 1; 95.3 1.5 5.1E-05 38.8 27.9 167 204-402 151-333 (365)
320 1bpo_A Protein (clathrin); cla 94.9 2.4 8.1E-05 39.2 27.5 167 204-402 150-332 (494)
321 1xi4_A Clathrin heavy chain; a 94.6 6.2 0.00021 42.5 22.2 172 204-404 105-292 (1630)
322 3ott_A Two-component system se 94.3 5.2 0.00018 40.6 37.0 172 205-402 324-503 (758)
323 1xi4_A Clathrin heavy chain; a 94.1 5.8 0.0002 42.7 20.3 134 204-356 150-301 (1630)
324 1cru_A Protein (soluble quinop 93.8 4.4 0.00015 38.1 29.5 32 33-64 27-58 (454)
325 2xn4_A Kelch-like protein 2; s 93.6 3.4 0.00012 36.2 20.8 22 381-402 251-277 (302)
326 3ii7_A Kelch-like protein 7; p 93.5 3.7 0.00013 36.0 22.0 23 381-403 247-274 (306)
327 2be1_A Serine/threonine-protei 93.4 3.2 0.00011 37.2 15.2 25 216-240 111-136 (339)
328 2wg3_C Hedgehog-interacting pr 93.3 5.4 0.00019 37.6 24.6 60 205-264 14-79 (463)
329 3s25_A Hypothetical 7-bladed b 93.2 4.2 0.00014 35.8 21.9 104 211-351 151-261 (302)
330 1bpo_A Protein (clathrin); cla 93.0 5.7 0.00019 36.8 33.4 216 124-416 74-303 (494)
331 1zgk_A Kelch-like ECH-associat 91.9 6.1 0.00021 34.7 20.6 147 215-403 121-289 (308)
332 3ii7_A Kelch-like protein 7; p 90.9 7.8 0.00027 33.9 18.9 27 126-152 101-133 (306)
333 2uvk_A YJHT; unknown function, 90.9 8.8 0.0003 34.5 19.5 27 380-406 315-347 (357)
334 3ei3_A DNA damage-binding prot 90.7 20 0.00068 38.3 36.6 121 267-422 845-978 (1158)
335 3ott_A Two-component system se 89.5 19 0.00066 36.3 32.7 163 204-403 418-588 (758)
336 3das_A Putative oxidoreductase 87.8 15 0.00051 33.0 28.6 114 114-274 32-159 (347)
337 1zgk_A Kelch-like ECH-associat 85.1 19 0.00064 31.5 17.0 64 215-287 168-242 (308)
338 2be1_A Serine/threonine-protei 84.3 8.3 0.00028 34.5 10.5 27 127-153 10-36 (339)
339 3sbq_A Nitrous-oxide reductase 83.6 17 0.00059 34.8 12.6 80 205-286 323-409 (638)
340 3q6k_A 43.2 kDa salivary prote 82.7 28 0.00095 31.6 19.5 157 226-401 124-306 (381)
341 2zwa_A Leucine carboxyl methyl 82.1 43 0.0015 33.4 19.0 157 215-404 451-638 (695)
342 4gq2_M Nucleoporin NUP120; bet 82.1 26 0.00088 36.6 14.7 34 255-289 237-270 (950)
343 2wg3_C Hedgehog-interacting pr 81.2 30 0.001 32.5 13.6 29 255-284 15-44 (463)
344 2vpj_A Kelch-like protein 12; 79.4 30 0.001 29.9 18.4 149 126-287 112-280 (301)
345 2zwa_A Leucine carboxyl methyl 78.4 57 0.002 32.5 21.5 69 215-287 500-579 (695)
346 2xn4_A Kelch-like protein 2; s 75.3 40 0.0014 29.1 21.5 23 381-403 204-231 (302)
347 4asc_A Kelch repeat and BTB do 74.4 43 0.0015 29.2 18.8 23 381-403 196-223 (315)
348 3sbq_A Nitrous-oxide reductase 71.3 14 0.00048 35.4 8.1 72 314-401 323-408 (638)
349 4asc_A Kelch repeat and BTB do 68.6 59 0.002 28.3 19.5 64 215-287 148-223 (315)
350 2woz_A Kelch repeat and BTB do 63.7 74 0.0025 27.6 21.3 24 263-287 157-186 (318)
351 3qhy_B Beta-lactamase inhibito 58.3 89 0.003 26.8 23.0 146 205-402 102-247 (282)
352 4a9v_A PHOX; hydrolase, beta-p 54.7 63 0.0022 31.1 9.3 61 314-389 476-549 (592)
353 3qhy_B Beta-lactamase inhibito 51.4 1.2E+02 0.004 26.1 20.2 106 205-343 24-129 (282)
354 4gq2_M Nucleoporin NUP120; bet 50.8 2.4E+02 0.008 29.4 17.5 38 114-153 236-273 (950)
355 2woz_A Kelch repeat and BTB do 49.0 1.3E+02 0.0045 26.0 15.8 64 215-287 158-233 (318)
356 3q6k_A 43.2 kDa salivary prote 48.7 1.6E+02 0.0053 26.7 21.8 126 204-343 151-306 (381)
357 4hvt_A Ritya.17583.B, post-pro 48.4 2.2E+02 0.0075 28.4 22.7 33 34-66 130-168 (711)
358 3zwu_A Alkaline phosphatase PH 46.5 87 0.003 30.4 9.1 59 315-388 477-548 (592)
359 2uvk_A YJHT; unknown function, 42.4 1.8E+02 0.0061 25.6 20.9 21 126-146 19-40 (357)
360 4fhn_B Nucleoporin NUP120; pro 42.3 54 0.0018 35.1 7.7 34 255-289 239-272 (1139)
361 3f7f_A Nucleoporin NUP120; nuc 40.8 1.5E+02 0.005 29.6 9.7 38 114-155 222-259 (729)
362 3f7f_A Nucleoporin NUP120; nuc 36.5 39 0.0013 33.5 5.0 34 31-66 220-253 (729)
363 1sqj_A OXG-RCBH, oligoxylogluc 33.2 4E+02 0.014 26.9 16.0 66 207-275 123-190 (789)
364 3b7f_A Glycosyl hydrolase, BNR 31.9 2.8E+02 0.0096 24.8 28.5 70 205-276 177-254 (394)
365 3zwu_A Alkaline phosphatase PH 31.6 1.5E+02 0.0051 28.8 8.1 60 255-331 477-548 (592)
366 4fhn_B Nucleoporin NUP120; pro 30.3 3E+02 0.01 29.3 11.0 39 206-245 239-278 (1139)
367 4a9v_A PHOX; hydrolase, beta-p 28.9 2.3E+02 0.0077 27.4 8.6 61 254-331 476-548 (592)
368 4hvt_A Ritya.17583.B, post-pro 24.3 5.4E+02 0.018 25.6 19.7 29 207-235 131-166 (711)
369 1sqj_A OXG-RCBH, oligoxylogluc 20.2 6.7E+02 0.023 25.2 11.9 71 205-276 64-143 (789)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.3e-49 Score=381.12 Aligned_cols=432 Identities=45% Similarity=0.808 Sum_probs=321.7
Q ss_pred cchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCC
Q 011368 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (487)
.+..|++.|.|++. .+.+.|.+.|++++|+|+|++||+|+.||.|+||++.+++.. ......
T Consensus 8 ~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~----------------~~~~~~ 69 (447)
T 3dw8_B 8 NDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI----------------QSHSRG 69 (447)
T ss_dssp CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCCCC
T ss_pred cceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCC----------------Cccccc
Confidence 45789999999963 566889999999999999999999999999999999877531 111233
Q ss_pred cceeEeeecCCCcccccccccccccceeEEEEEecCCC--cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (487)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
+++....+.+|.++|+++.++.+++.|.+++|+ |++ .+|++++.|++|++||+..+....... .. .
T Consensus 70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~---------~ 137 (447)
T 3dw8_B 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--PQKNAAQFLLSTNDKTIKLWKISERDKRPEGY-NL---------K 137 (447)
T ss_dssp CEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC--CCCSSSEEEEEECSSCEEEEEEEEEEEEEECC-SC---------C
T ss_pred ceeEecccccccccccccccccccCceEEEEEc--CCCCcceEEEeCCCCeEEEEecccccCCccee-cc---------c
Confidence 566788999999999999999999999999995 555 799999999999999998765432110 00 0
Q ss_pred ccccccccccCCCCc---ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeec
Q 011368 168 LAEKNFMNEHNPPSF---AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM 244 (487)
Q Consensus 168 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~ 244 (487)
...+........... ............+.+.+..+|...|.+++|+|++++|++|.|+.|++||++.......++..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~ 217 (447)
T 3dw8_B 138 EEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDI 217 (447)
T ss_dssp --------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEEC
T ss_pred CccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeec
Confidence 000000000000000 00000011122334455578999999999999999999999999999999966677777666
Q ss_pred CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368 245 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 324 (487)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~ 324 (487)
++..+.+|...|.+++|+|+++.+|++++.||.|++||+++++........+..| ..+.....+.+|...|.+++|+|+
T Consensus 218 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~ 296 (447)
T 3dw8_B 218 KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSISDVKFSHS 296 (447)
T ss_dssp CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEEEEEECTT
T ss_pred ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC-CCccccccccccCceEEEEEECCC
Confidence 6667889999999999999976899999999999999999987644445777774 223334445667779999999999
Q ss_pred CCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 325 GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 325 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
|++|++++++.|++||++..+.++..+..|......++..+..+++++++.++|+|++++|++|+.||.|++||+.+++.
T Consensus 297 g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 297 GRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp SSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred CCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 99999987799999999866788899999987766666666677777667899999999999999999999999998743
Q ss_pred eeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEE
Q 011368 405 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 484 (487)
Q Consensus 405 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i 484 (487)
..+.++..+.......+. .. +..++.... ........++...|.+++|||++++||+++.+++|+
T Consensus 377 --~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~ 441 (447)
T 3dw8_B 377 --ITLEASRENNKPRTVLKP--RK------VCASGKRKK-----DEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYI 441 (447)
T ss_dssp --EEEECCSTTCCTTCBCCC--CC------EECSSCCCT-----TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEE
T ss_pred --eeeeecccccccccccCC--cc------ccccCCccc-----ccccccccccCCceeEEEECCCCCEEEEEecceeee
Confidence 477778776654444432 11 233322211 112223456788999999999999999999999999
Q ss_pred EeC
Q 011368 485 HYA 487 (487)
Q Consensus 485 ~~~ 487 (487)
|++
T Consensus 442 ~~~ 444 (447)
T 3dw8_B 442 FQD 444 (447)
T ss_dssp EEC
T ss_pred ecc
Confidence 985
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-45 Score=367.89 Aligned_cols=401 Identities=13% Similarity=0.121 Sum_probs=288.8
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. .....+.+|.
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-------------------------~~~~~~~~~~------ 103 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-------------------------ILKTTIPVFS------ 103 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-------------------------CEEEEEECSS------
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-------------------------eeeEeecccC------
Confidence 447999999999999999999999999999999875532 1345678888
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCC----CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
++|.+++| +|++++|++++.+ +.|++||. ++..... ......+.++.|.+.....++++..+...
T Consensus 104 ------~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v 172 (611)
T 1nr0_A 104 ------GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDT--GTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTV 172 (611)
T ss_dssp ------SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTT--CCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred ------CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeC--CCCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence 89999999 6899999998865 46888874 3322221 23445678888877655555555555443
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
.+... ...+.... +.+|...|++++|+|++++|++| .|++|++||+.++ .....+........+|...|.+++|+
T Consensus 173 ~lwd~--~~~~~~~~-l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 173 AIFEG--PPFKFKST-FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp EEEET--TTBEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred EEEEC--CCCeEeee-eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEEC
Confidence 33221 12233344 48999999999999999999999 9999999999844 44433211111223799999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc------------------------------ccCcccccccc
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE------------------------------SHGSKSFFTEI 312 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~------------------------------~~~~~~~~~~~ 312 (487)
|++ ++|++++.|+.|++||+++++.. ..+..+.. .......+.+|
T Consensus 249 pdg-~~l~s~s~D~~v~lWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh 323 (611)
T 1nr0_A 249 PDG-TKIASASADKTIKIWNVATLKVE----KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323 (611)
T ss_dssp TTS-SEEEEEETTSEEEEEETTTTEEE----EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred CCC-CEEEEEeCCCeEEEEeCCCCcee----eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence 999 99999999999999999987643 22221000 00011235689
Q ss_pred ccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee-ecccccccc-------------------ccccc------
Q 011368 313 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPK-------------------LCDLY------ 365 (487)
Q Consensus 313 ~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~-------------------~~~~~------ 365 (487)
...|.+++|+|+|++|++++ |+.|++||+.+ +.....+ ..|...+.. +++..
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~ 402 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 402 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccc
Confidence 99999999999999999986 59999999986 4433322 112111000 00000
Q ss_pred -----------------CCC------------------------CcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 366 -----------------NND------------------------SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 366 -----------------~~~------------------------~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
..+ ....+.+++|+|||++|++|+.|+.|++||+.++..
T Consensus 403 ~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 403 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred cceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce
Confidence 000 011246899999999999999999999999987643
Q ss_pred eeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC---Ccccc-cc-ccCCCeEEEEEcCCCCEEEEec
Q 011368 405 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS---GHHEL-SY-NLSSKLLHLAWHPTTNLIACAN 478 (487)
Q Consensus 405 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~---~~~~~-~~-~~~~~v~~~~~spd~~~la~~s 478 (487)
......+|...|.+++|+| ++++ |++++.|+. ++|+.. +.... .. .|...|.+++|+|||++||+|+
T Consensus 483 ~~~~~~~h~~~v~~v~fsp--dg~~-----las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 483 SEVKTIVHPAEITSVAFSN--NGAF-----LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555 (611)
T ss_dssp EEEEEEECSSCEEEEEECT--TSSE-----EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred eeeeccCCCCceEEEEECC--CCCE-----EEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE
Confidence 3223378999999999998 7788 999999999 999543 22222 23 3999999999999999999999
Q ss_pred CCe-EEEEeC
Q 011368 479 GNS-LFFHYA 487 (487)
Q Consensus 479 ~~~-~~i~~~ 487 (487)
.|+ ++||+.
T Consensus 556 ~D~~v~lW~~ 565 (611)
T 1nr0_A 556 LDNSVIVWNM 565 (611)
T ss_dssp TTSCEEEEET
T ss_pred CCCcEEEEEC
Confidence 665 999974
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.8e-44 Score=359.75 Aligned_cols=382 Identities=11% Similarity=0.118 Sum_probs=281.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
+.+.+.+++|+|+|++||+++ ++.|+||++.+++. ...+.+|.
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~---------------------------~~~~~~h~--------- 59 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD---------------------------TEIYTEHS--------- 59 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC---------------------------CEEECCCS---------
T ss_pred ccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc---------------------------CeEecCCC---------
Confidence 467788999999999999987 57999999876654 37789999
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|++++| +|+|++|++|+.|++|+|||+.+++.... ........+.++.|.+. +..+++.............
T Consensus 60 ---~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 60 ---HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEE
T ss_pred ---CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC-CCEEEEEECCCCceeEEEE
Confidence 88999999 68999999999999999999975543222 22234556888888765 4444444443333445566
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
|+.......+ .+|...|++++|+|++. .|++| .|++|++||.. ..++.. .+.+|...|.+++|+|++ +
T Consensus 134 wd~~~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~-------~l~~H~~~V~~v~fspdg-~ 203 (611)
T 1nr0_A 134 FDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKS-------TFGEHTKFVHSVRYNPDG-S 203 (611)
T ss_dssp TTTCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEE-------EECCCSSCEEEEEECTTS-S
T ss_pred eeCCCCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEee-------eeccccCceEEEEECCCC-C
Confidence 7776666554 89999999999999987 58888 99999999987 344433 357899999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
+|++++.|+.|++||+.+++.. ..+.. ......+|...|.+++|+|+|++|++++ |++|++||+.+ ++
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~----~~~~~------~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~ 272 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LK 272 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TE
T ss_pred EEEEEECCCcEEEEECCCCcEe----eeecc------ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC-Cc
Confidence 9999999999999999887643 33321 0001125789999999999999999986 69999999986 66
Q ss_pred eeeeeeccccccc---------------------ccc---------cc-cCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368 347 PVATFKIHEHLRP---------------------KLC---------DL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLR 395 (487)
Q Consensus 347 ~~~~~~~~~~~~~---------------------~~~---------~~-~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~ 395 (487)
.+..+..+..... .++ .+ .+.. .|++++|+|||++|++++.|+.|+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~---~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK---AITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC---CEEEEEEeCCCCEEEEEeCCCcEE
Confidence 6655543211000 000 00 1122 246999999999999999999999
Q ss_pred EEEeCCCCceeEEEeccC--------------------------------------------------------------
Q 011368 396 IFSHGVGSAGGITVEAGK-------------------------------------------------------------- 413 (487)
Q Consensus 396 iwd~~~~~~~~~~~~~~~-------------------------------------------------------------- 413 (487)
+||+.++........+|.
T Consensus 350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~ 429 (611)
T 1nr0_A 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429 (611)
T ss_dssp EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE
Confidence 999987632111001121
Q ss_pred -------------------CccccceEeeCCccccccccceeeecccce-ecCCCCCcc---ccccccCCCeEEEEEcCC
Q 011368 414 -------------------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH---ELSYNLSSKLLHLAWHPT 470 (487)
Q Consensus 414 -------------------~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~---~~~~~~~~~v~~~~~spd 470 (487)
..+.+++++| ++++ +++|+.|+. ++|+..... ....+|...|++++|+||
T Consensus 430 ~~~~v~~~~~~~~~~~~~~~~v~~va~sp--dg~~-----lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspd 502 (611)
T 1nr0_A 430 CYKHIAIYSHGKLTEVPISYNSSCVALSN--DKQF-----VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 502 (611)
T ss_dssp ESSEEEEEETTEEEEEECSSCEEEEEECT--TSCE-----EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT
T ss_pred eCceEEEEeCCceeeeecCCCceEEEEeC--CCCE-----EEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCC
Confidence 2234455555 5666 999999999 999543221 122578999999999999
Q ss_pred CCEEEEecCC-eEEEEe
Q 011368 471 TNLIACANGN-SLFFHY 486 (487)
Q Consensus 471 ~~~la~~s~~-~~~i~~ 486 (487)
|++||+++.| .+++|+
T Consensus 503 g~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 503 GAFLVATDQSRKVIPYS 519 (611)
T ss_dssp SSEEEEEETTSCEEEEE
T ss_pred CCEEEEEcCCCCEEEEE
Confidence 9999999955 488886
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=326.39 Aligned_cols=284 Identities=15% Similarity=0.247 Sum_probs=237.8
Q ss_pred cccccCcEEEEEEcCC----CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368 28 ELQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~----~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (487)
...|.+.|++++|+|+ +++|++|+.|++|+||++.+++. .....+.+|.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------~~~~~l~gh~-- 80 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------DLQWSLEGHQ-- 80 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS--
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------eeeeeeccCC--
Confidence 3469999999999985 57999999999999999986632 2345789999
Q ss_pred cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|.+++| ++++.++++++.|++|++||+.+++....
T Consensus 81 ----------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~------------------------------- 117 (321)
T 3ow8_A 81 ----------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKS------------------------------- 117 (321)
T ss_dssp ----------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE-------------------------------
T ss_pred ----------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEE-------------------------------
Confidence 89999999 57889999999999999999998875543
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
+..|...+.+++|+|++++|+++ .|+.|++|+++.+..... +..|...|.+++|+
T Consensus 118 ----------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--------~~~~~~~v~~~~~s 173 (321)
T 3ow8_A 118 ----------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--------LDTRGKFILSIAYS 173 (321)
T ss_dssp ----------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--------EECSSSCEEEEEEC
T ss_pred ----------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--------ecCCCceEEEEEEC
Confidence 25677889999999999999999 999999999996554332 35677889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 341 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~ 341 (487)
|++ ++|++++.||.|++||+++++.. ..+.+ |...|.+++|+|++++|++++ |+.|++||+
T Consensus 174 pdg-~~lasg~~dg~i~iwd~~~~~~~----~~~~~-------------h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~ 235 (321)
T 3ow8_A 174 PDG-KYLASGAIDGIINIFDIATGKLL----HTLEG-------------HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235 (321)
T ss_dssp TTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCCCEEEECTTSCEEEEECTTSCEEEEET
T ss_pred CCC-CEEEEEcCCCeEEEEECCCCcEE----EEEcc-------------cCCceeEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence 999 99999999999999999988654 55555 478899999999999999986 599999999
Q ss_pred CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368 342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 421 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 421 (487)
+. ...+..+.+|...+ ++++|+|++++|++|+.|++|++||+.+++ ....+.
T Consensus 236 ~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~----------- 287 (321)
T 3ow8_A 236 QH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRT-CVHTFF----------- 287 (321)
T ss_dssp TT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEEC-----------
T ss_pred CC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCCE-EEEEEc-----------
Confidence 87 78888888888754 699999999999999999999999998762 233332
Q ss_pred eeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 422 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 422 ~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
+|...|.+++|+|++++|++++.|+ +.||.
T Consensus 288 -----------------------------------~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 288 -----------------------------------DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred -----------------------------------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 3445788999999999999888665 88886
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-43 Score=323.58 Aligned_cols=284 Identities=19% Similarity=0.212 Sum_probs=235.3
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|++++|++|+.||+|+|||+.+++. +..+.+|.
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------------~~~~~~~~------- 55 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------------VRSIQVTE------- 55 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------------eEEeeccC-------
Confidence 35889999999999999999999999999999887653 57788888
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
.+|.+++|+ +++++|++|+.|++|++||+.+++....
T Consensus 56 -----~~v~~~~~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~------------------------------------ 92 (304)
T 2ynn_A 56 -----TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVD------------------------------------ 92 (304)
T ss_dssp -----SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred -----CcEEEEEEe--CCCCEEEEECCCCEEEEEECCCCcEEEE------------------------------------
Confidence 889999995 6889999999999999999998875543
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+.+|...|++++|+|++++|++| .|++|++||++.+..... .+.+|...|.+++|+|.++.
T Consensus 93 -----------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-------~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 93 -----------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-------TFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp -----------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-------EECCCCSCEEEEEECTTCTT
T ss_pred -----------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-------hhcccCCcEEEEEECCCCCC
Confidence 37899999999999999999999 999999999986544433 35789999999999995338
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC--CCCEEEEEe-CCeEEEEeCCCC
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~s~~-d~~i~iwd~~~~ 344 (487)
+|++++.|+.|++||++++... ..+.. +|...+..+.|+| ++.+|++++ |+.|++||+++
T Consensus 155 ~l~sgs~D~~v~iwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~- 217 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQSTPN----FTLTT------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT- 217 (304)
T ss_dssp EEEEEETTSEEEEEETTCSSCS----EEEEC------------CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-
T ss_pred EEEEEeCCCeEEEEECCCCCcc----ceecc------------CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-
Confidence 9999999999999999876533 22222 2356789999986 778999986 59999999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
++++..+.+|...+ ..++|+|++++|++|+.||.|++||+.+++ ....+..|
T Consensus 218 ~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~------------ 269 (304)
T 2ynn_A 218 KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNVG------------ 269 (304)
T ss_dssp TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCS------------
T ss_pred CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeeccCC------------
Confidence 88999999998754 689999999999999999999999998873 23333333
Q ss_pred CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCC--EEEEecCCeEEEEe
Q 011368 425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN--LIACANGNSLFFHY 486 (487)
Q Consensus 425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~--~la~~s~~~~~i~~ 486 (487)
...+.+++|+|++. ++|+|++|++.+|+
T Consensus 270 ----------------------------------~~~~~~~~~~~~~~~~~~asg~~~g~~~~~ 299 (304)
T 2ynn_A 270 ----------------------------------LERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (304)
T ss_dssp ----------------------------------SSSEEEEEECTTCGGGCEEEEETTEEEEEE
T ss_pred ----------------------------------CccEEEEEECCCCCceEEEEecCCceEEEE
Confidence 23667788888774 57888888887775
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-43 Score=338.22 Aligned_cols=282 Identities=18% Similarity=0.261 Sum_probs=240.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.++|++++|+|++++|++|+.||+|+|||+.+++. ...+.+|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------------~~~l~~h~------ 150 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------------ERTLKGHT------ 150 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------------CEEECCCS------
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEeccC------
Confidence 456999999999999999999999999999999988765 37789999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+.|.+++| ++++++|++|+.|++|++||+.+++....
T Consensus 151 ------~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~~----------------------------------- 187 (410)
T 1vyh_C 151 ------DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT----------------------------------- 187 (410)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC-----------------------------------
T ss_pred ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEE-----------------------------------
Confidence 89999999 57899999999999999999988765433
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.+|...|.+++|+|++++|++| .|++|++||++++ .++.. +.+|...|.++.|+|++
T Consensus 188 ------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~~~~-------~~~h~~~v~~~~~~~~g- 246 (410)
T 1vyh_C 188 ------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKT-------FTGHREWVRMVRPNQDG- 246 (410)
T ss_dssp ------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEE-------EECCSSCEEEEEECTTS-
T ss_pred ------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEE-------EeCCCccEEEEEECCCC-
Confidence 37899999999999999999999 9999999999954 44433 46899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--------------------CC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------------------GQ 326 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--------------------~~ 326 (487)
.+|++++.|+.|++||+++++.. ..+.. |...|.+++|+|+ |.
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~----~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECK----AELRE-------------HRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred CEEEEEcCCCeEEEEECCCCcee----eEecC-------------CCceEEEEEEcCcccccchhhhccccccccCCCCC
Confidence 99999999999999999987643 44444 4788999999996 67
Q ss_pred EEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368 327 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 405 (487)
Q Consensus 327 ~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~ 405 (487)
+|++|+ |+.|++||+++ +.++..+.+|...+ ++++|+|+|++|++|+.||.|++||+.+++ .
T Consensus 310 ~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~ 372 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDKTLRVWDYKNKR-C 372 (410)
T ss_dssp EEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTTEEEEECCTTSC-C
T ss_pred EEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCc-e
Confidence 899886 59999999997 88899999888754 699999999999999999999999998763 2
Q ss_pred eEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEE
Q 011368 406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFF 484 (487)
Q Consensus 406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i 484 (487)
...+. .|...|++++|+|++++||+|+.|+ +.+
T Consensus 373 ~~~~~----------------------------------------------~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 373 MKTLN----------------------------------------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp CEEEE----------------------------------------------CCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred EEEEc----------------------------------------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 33333 3444778888888888888888554 788
Q ss_pred Ee
Q 011368 485 HY 486 (487)
Q Consensus 485 ~~ 486 (487)
|.
T Consensus 407 W~ 408 (410)
T 1vyh_C 407 WE 408 (410)
T ss_dssp EC
T ss_pred Ee
Confidence 85
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.8e-42 Score=342.27 Aligned_cols=355 Identities=19% Similarity=0.255 Sum_probs=287.0
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|.+++|+|++++|++++.|+.|++|+.... .+..+.+|.
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~~~------- 262 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS------- 262 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC----------------------------EEEEECCCS-------
T ss_pred ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------------------------EEEEEecCC-------
Confidence 458889999999999999999999999999995322 357788898
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++| +|++..|++++.|+.|++|+......... ......+.++.+.+ ++..++.+..+.. ..
T Consensus 263 -----~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~~~~~--~~h~~~v~~~~~~~-~~~~l~t~~~d~~----i~ 328 (577)
T 2ymu_A 263 -----SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSP-DGQTIASASDDKT----VK 328 (577)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEE--CCCSSCEEEEEECT-TSSEEEEEETTSC----EE
T ss_pred -----CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcEEEEE--ecCCCCeEEEEECC-CCCEEEEEeCCCe----EE
Confidence 88999999 68899999999999999999765433322 23345566777654 4444444443332 23
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
.|+........+.+|...|.+++|+|++++|+++ .|+.|++||.. + ..+. .+.+|...|.+++|+|++ +
T Consensus 329 ~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~-------~~~~~~~~v~~~~~s~dg-~ 398 (577)
T 2ymu_A 329 LWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQ-------TLTGHSSSVRGVAFSPDG-Q 398 (577)
T ss_dssp EEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEE-------EEECCSSCEEEEEECTTS-S
T ss_pred EEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEE-------EecCCCCCeEEEEECCCC-C
Confidence 3554333333347899999999999999999999 99999999965 3 3333 246789999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
+|++++.|+.|++||... +.. ..+.. |...|.+++|+|++++|++++ |+.|++||.. ++
T Consensus 399 ~l~~~~~d~~v~~~~~~~-~~~----~~~~~-------------~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~ 458 (577)
T 2ymu_A 399 TIASASDDKTVKLWNRNG-QLL----QTLTG-------------HSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQ 458 (577)
T ss_dssp CEEEEETTSEEEEECTTC-CEE----EEEEC-------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SC
T ss_pred EEEEEeCCCEEEEEeCCC-CEE----EEecC-------------CCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CC
Confidence 999999999999999643 322 44444 578999999999999999986 5999999974 67
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
.+..+.+|...+ ++++|+||+++|++++.|+.|++||.. + .....+.+|...|++++|+| +
T Consensus 459 ~~~~~~~~~~~v---------------~~~~~spd~~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~~l~~s~--d 519 (577)
T 2ymu_A 459 LLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSP--D 519 (577)
T ss_dssp EEEEEECCSSCE---------------EEEEECTTSCEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECT--T
T ss_pred EEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEEEEEcCC-C-CEEEEEeCCCCCEEEEEEcC--C
Confidence 788888887754 699999999999999999999999964 4 56788999999999999998 7
Q ss_pred cccccccceeeecccce-ecCCC-CCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 427 ARRSSLSNLTRGLYRQA-HENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~-~~w~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
+++ |++++.|+. ++|+. ++.+..+.+|...|++++|+||+++|++++.|+ +++|+
T Consensus 520 g~~-----l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSC-----EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCE-----EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 777 999999999 99954 455666779999999999999999999998665 99995
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.1e-43 Score=324.51 Aligned_cols=261 Identities=13% Similarity=0.131 Sum_probs=197.4
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...|.+++|+|||++|++++ |+++++||....... ... ..+..........|
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~-------~~~---------~~~~~~~~~~~~~~------- 81 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK-------DPC---------AAPNEGFCSAGVQT------- 81 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES-------SGG---------GTTCGGGCSEEEEE-------
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec-------ccc---------ccCCcceeeeeecc-------
Confidence 445778899999999999999887 778899874321100 000 00000001111122
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+..|.+++|+ ++ ..|++|+.||+|+|||+.+++......
T Consensus 82 -----~~~v~~~~~s--~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~--------------------------------- 120 (344)
T 4gqb_B 82 -----EAGVADLTWV--GE-RGILVASDSGAVELWELDENETLIVSK--------------------------------- 120 (344)
T ss_dssp -----SSCEEEEEEE--TT-TEEEEEETTSEEEEEEECTTSSCEEEE---------------------------------
T ss_pred -----CCCEEEEEEe--CC-CeEEEEECCCEEEEEeccCCCceeEee---------------------------------
Confidence 3789999995 55 478899999999999999876543211
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
....+|...|++++|+|++++|++| .|++|++||+++ +.++. .+.+|...|.+++|+|++.
T Consensus 121 ----------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~-------~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 121 ----------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLS-------SYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp ----------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE-------EECCCSSCEEEEEECSSCT
T ss_pred ----------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEE-------EEcCcCCceEEEEecCCCC
Confidence 1136899999999999999999999 999999999994 44443 3578999999999999985
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe-CCeEEEEeCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~-d~~i~iwd~~~~ 344 (487)
.+|++++.|+.|++||+++++.. ..+.. ..|...+.+++|+|+ +++|++|+ |+.|++||+++
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~- 246 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS- 246 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred Cceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-
Confidence 68999999999999999988654 33332 123457899999985 56778876 59999999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~ 402 (487)
++++..+.+|...+ ++++|+|++ ++|++|+.|++|+|||+.++
T Consensus 247 ~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 247 TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp --CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 88899999998755 699999998 57999999999999999876
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.6e-42 Score=341.90 Aligned_cols=360 Identities=18% Similarity=0.252 Sum_probs=283.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+|++.|+|++|||||++||+|+.|++|+|||. +++ .+.++.+|.
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~---------------------------~~~~l~gh~------ 57 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ---------------------------LLQTLTGHS------ 57 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC---------------------------EEEEEECCS------
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC---------------------------EEEEEeCCC------
Confidence 4469999999999999999999999999999995 332 357899999
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| +|++++|++++.|++|++||+.......+. .....+.++.|.+. +..++.+..+.......
T Consensus 58 ------~~V~~l~f--spdg~~las~~~d~~i~vWd~~~~~~~~~~--~~~~~v~~~~~s~d-~~~l~~~~~d~~~~~~~ 126 (577)
T 2ymu_A 58 ------SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPD-GQTIASASDDKTVKLWN 126 (577)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred ------CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCEEEEEE--CCCCCEEEEEECCC-CCEEEEEcCCCceeecc
Confidence 89999999 689999999999999999997544333222 23455677777654 44444433322211111
Q ss_pred e-------------------------------------eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEE
Q 011368 188 L-------------------------------------EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 229 (487)
Q Consensus 188 ~-------------------------------------~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~i 229 (487)
. .|............|...|.++.++|++++|+++ .|+.|++
T Consensus 127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 206 (577)
T 2ymu_A 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206 (577)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred cccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEE
Confidence 0 0121222222336788899999999999999999 9999999
Q ss_pred EEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccc
Q 011368 230 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 309 (487)
Q Consensus 230 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 309 (487)
||.. +.... .+.+|...|.+++|+|++ .+|++++.|+.|++||.... .. ..+.+
T Consensus 207 w~~~--~~~~~-------~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~i~~w~~~~~-~~----~~~~~----------- 260 (577)
T 2ymu_A 207 WNRN--GQLLQ-------TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LL----QTLTG----------- 260 (577)
T ss_dssp ECTT--SCEEE-------EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSC-EE----EEECC-----------
T ss_pred EeCC--CcEEE-------EEecCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCC-EE----EEEec-----------
Confidence 9975 33333 246788999999999999 99999999999999996542 22 44444
Q ss_pred cccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE
Q 011368 310 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 388 (487)
Q Consensus 310 ~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg 388 (487)
|...|.+++|+|++++|++++ ++.|++||.. ++.+..+.+|...+ ++++|+|++++|+++
T Consensus 261 --~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 261 --HSSSVNGVAFRPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSV---------------WGVAFSPDGQTIASA 321 (577)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECCCSSCE---------------EEEEECTTSSEEEEE
T ss_pred --CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC--CcEEEEEecCCCCe---------------EEEEECCCCCEEEEE
Confidence 578999999999999999986 5999999974 67778888887654 699999999999999
Q ss_pred cCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCC-CCCccccccccCCCeEEEE
Q 011368 389 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLA 466 (487)
Q Consensus 389 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~-~~~~~~~~~~~~~~v~~~~ 466 (487)
+.|+.|++||+... ....+.+|...+.+++++| +++. +++|+.++. ++|+ .++.......|...|.+++
T Consensus 322 ~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~--~g~~-----l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~ 392 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSP--DGQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA 392 (577)
T ss_dssp ETTSCEEEEETTSC--EEEEECCCSSCEEEEEECT--TSSE-----EEEEETTSEEEEEETTCCEEEEEECCSSCEEEEE
T ss_pred eCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECC--CCCE-----EEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEE
Confidence 99999999998644 4677889999999999998 6777 999999999 9994 3455566678999999999
Q ss_pred EcCCCCEEEEecCCe-EEEEe
Q 011368 467 WHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 467 ~spd~~~la~~s~~~-~~i~~ 486 (487)
|+||+++||+++.|+ +++|+
T Consensus 393 ~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 393 FSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEeCCCEEEEEe
Confidence 999999999998665 88886
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.8e-42 Score=317.94 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=232.1
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|++++|+|++++|++|+.||+|+|||..+++. ...+..|.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------------~~~~~~~~------ 97 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------------VHAIPLRS------ 97 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECSS------
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------------ceEeecCC------
Confidence 346899999999999999999999999999999876653 46677888
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| +|++.+|++++.|+.|++|++.++.....
T Consensus 98 ------~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~----------------------------------- 134 (340)
T 1got_B 98 ------SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVR----------------------------------- 134 (340)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCE-----------------------------------
T ss_pred ------ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcce-----------------------------------
Confidence 88999999 57899999999999999999976531100
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
.... +.+|...|.++.|++++. ++++ .|+.|++||++++ .... .+.+|...|.+++|+|++
T Consensus 135 -------~~~~-~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~-~~~~-------~~~~h~~~v~~~~~~~~~- 196 (340)
T 1got_B 135 -------VSRE-LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG-QQTT-------TFTGHTGDVMSLSLAPDT- 196 (340)
T ss_dssp -------EEEE-EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-EEEE-------EECCCSSCEEEEEECTTS-
T ss_pred -------eEEE-ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-cEEE-------EEcCCCCceEEEEECCCC-
Confidence 1111 368999999999998875 6666 9999999999854 3433 356899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.+|++++.|+.|++||++++... ..+.. |...|.+++|+|++++|++|+ |+.|++||++. .
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~----~~~~~-------------h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~ 258 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCR----QTFTG-------------HESDINAICFFPNGNAFATGSDDATCRLFDLRA-D 258 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-T
T ss_pred CEEEEEeCCCcEEEEECCCCeeE----EEEcC-------------CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-C
Confidence 99999999999999999987644 45555 478999999999999999986 59999999986 6
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 425 (487)
..+..+..+... ..+++++|+|+|++|++|+.||.|++||+.+++. ...+.
T Consensus 259 ~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~~~--------------- 309 (340)
T 1got_B 259 QELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-AGVLA--------------- 309 (340)
T ss_dssp EEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEE---------------
T ss_pred cEEEEEccCCcc-------------cceEEEEECCCCCEEEEECCCCeEEEEEcccCcE-eeEee---------------
Confidence 666555432211 1236999999999999999999999999987632 22232
Q ss_pred ccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 426 RARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 426 ~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
+|...|.+++|+||+.+||+|+.|+ ++||+
T Consensus 310 -------------------------------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 -------------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -------------------------------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 4555788999999999999988665 88885
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-42 Score=325.10 Aligned_cols=255 Identities=15% Similarity=0.214 Sum_probs=195.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEec------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (487)
...|...|++++|||||++||+|+. |+.|++|+..++.. .........+|.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-----------------------~~~~~~~~~~~~ 94 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-----------------------NESLCTAGVQTE 94 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--------------------------CGGGCSEEEECS
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-----------------------ceeEecccCCCC
Confidence 4569999999999999999999997 67889998766643 122233345566
Q ss_pred cccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 102 ~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
..|.+++|+ |++ .+++++.|++|++||+.+++......
T Consensus 95 ------------~~V~~~~~s--~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~--------------------------- 132 (357)
T 4g56_B 95 ------------AGVTDVAWV--SEK-GILVASDSGAVELWEILEKESLLVNK--------------------------- 132 (357)
T ss_dssp ------------SCEEEEEEE--TTT-EEEEEETTSCEEEC--------CCCC---------------------------
T ss_pred ------------CCEEEEEEc--CCC-CEEEEECCCEEEEeeccccceeEEEe---------------------------
Confidence 889999995 565 46678899999999998876432210
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
....+|...|++++|+|++++|++| .|+.|++||+++ +.... .+.+|...|++++
T Consensus 133 ----------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~-~~~~~-------~~~~h~~~v~~v~ 188 (357)
T 4g56_B 133 ----------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-KAVLK-------SYNAHSSEVNCVA 188 (357)
T ss_dssp ----------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-TEEEE-------EECCCSSCEEEEE
T ss_pred ----------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEE-------EEcCCCCCEEEEE
Confidence 0125899999999999999999999 999999999994 44443 3578999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEe-CCeEEE
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKL 338 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~i 338 (487)
|+|++..++++++.||.|++||+++++.. ..+.. ..|...+.+++|+|++ .+|++|+ |+.|++
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~-----------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF-----------CASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC-----------TTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred EccCCCceeeeeccCCceEEEECCCCcee----eeeee-----------ccccccccchhhhhcccceEEEeecccceeE
Confidence 99998568999999999999999987643 22222 2245789999999985 5777775 599999
Q ss_pred EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCC
Q 011368 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~ 402 (487)
||+++ ++++..+.+|...+ ++++|+|++ ++|++|+.|++|+|||++++
T Consensus 254 wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 254 VNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp EESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred EECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 99997 78888888888754 699999987 57999999999999999876
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.5e-41 Score=309.20 Aligned_cols=294 Identities=14% Similarity=0.219 Sum_probs=235.6
Q ss_pred cccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...|.+.|++++|+|++ ++|++|+.|++|++|++.+.... ....+..+++|.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~----- 65 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS----- 65 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS-----
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc-----
Confidence 34699999999999965 89999999999999998754321 223467889999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|.+++| ++++.+|++++.|++|++||+.+++....
T Consensus 66 -------~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~---------------------------------- 102 (319)
T 3frx_A 66 -------HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQR---------------------------------- 102 (319)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred -------ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEE----------------------------------
Confidence 89999999 68999999999999999999998875443
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+.+|...|.+++|+|++++|++| .|++|++||++ +. +.. .+.+|...|.++.|+|.+
T Consensus 103 -------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~-~~~-------~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 103 -------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ-CLA-------TLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp -------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SC-EEE-------EECCCSSCEEEEEECCC-
T ss_pred -------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC-eEE-------EEeccCCcEEEEEEccCC
Confidence 37899999999999999999999 99999999997 33 332 346899999999999853
Q ss_pred -----CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEE
Q 011368 266 -----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 339 (487)
Q Consensus 266 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iw 339 (487)
...|++++.|+.|++||+++.+.. ..+.+ |...|.+++|+|+|++|++++ |+.|++|
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~-------------h~~~v~~~~~sp~g~~l~s~~~dg~i~iw 223 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIE----ADFIG-------------HNSNINTLTASPDGTLIASAGKDGEIMLW 223 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEE----EEECC-------------CCSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhh----eeecC-------------CCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 148999999999999999886543 44444 578999999999999999986 6999999
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 419 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 419 (487)
|+.+ ++.+..+..+.. +.+++|+|++.+|++++.+ .+++|++..+.. ...+..+.
T Consensus 224 d~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~-~~~~~~~~------ 278 (319)
T 3frx_A 224 NLAA-KKAMYTLSAQDE----------------VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL-VDDLRPEF------ 278 (319)
T ss_dssp ETTT-TEEEEEEECCSC----------------EEEEEECSSSSEEEEEETT-EEEEEEETTEEE-EEEECCCC------
T ss_pred ECCC-CcEEEEecCCCc----------------EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee-eeccCccc------
Confidence 9987 777877776543 2599999999999988765 599999986521 22221110
Q ss_pred eEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 420 ILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
......+...|.+++|+|||++|++|+.|+ ++||++
T Consensus 279 --------------------------------~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 279 --------------------------------AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp --------------------------------TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred --------------------------------cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 011123455788999999999999999665 899973
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.7e-41 Score=314.82 Aligned_cols=290 Identities=14% Similarity=0.198 Sum_probs=233.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|+|++|+|++++||+|+.||+|+|||..+++. ...+..|.
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~~------ 106 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------EHAVTMPC------ 106 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECSS------
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------------ceEEecCC------
Confidence 456999999999999999999999999999999876643 35666777
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| +|++.+|++++.|+.+++|++........
T Consensus 107 ------~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~----------------------------------- 143 (354)
T 2pbi_B 107 ------TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENM----------------------------------- 143 (354)
T ss_dssp ------SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCS-----------------------------------
T ss_pred ------CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccc-----------------------------------
Confidence 78999999 68899999999999999999865421100
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--C
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--I 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~ 264 (487)
...... +.+|...|.+++|+|+++.|+++ .|++|++||++++ .... .+.+|...|.+++|+| +
T Consensus 144 -----~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~-------~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 144 -----AAKKKS-VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQ-------SFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp -----GGGCEE-EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEE-------EEECCSSCEEEEEECCCSS
T ss_pred -----ccccee-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEE-------EEcCCCCCeEEEEEEeCCC
Confidence 001111 36899999999999999999999 9999999999954 4443 2468999999999987 4
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
+ .+|++++.||.|++||+++++.. ..+.. |...|.+++|+|++.+|++++ |+.|++||++.
T Consensus 210 g-~~l~sgs~Dg~v~~wd~~~~~~~----~~~~~-------------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 210 G-NTFVSGGCDKKAMVWDMRSGQCV----QAFET-------------HESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp C-CEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred C-CEEEEEeCCCeEEEEECCCCcEE----EEecC-------------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 5 89999999999999999987654 55555 478999999999999999986 59999999986
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
...+..+..+... ..+.+++|+|++++|++|+.|+.|++||+.+++. ...+
T Consensus 272 -~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~l-------------- 322 (354)
T 2pbi_B 272 -DREVAIYSKESII-------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSIL-------------- 322 (354)
T ss_dssp -TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEE--------------
T ss_pred -CcEEEEEcCCCcc-------------cceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EEEE--------------
Confidence 6666555433221 1236899999999999999999999999987732 2222
Q ss_pred CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
.+|...|.+++|+||+++||+|+.|+ ++||+
T Consensus 323 --------------------------------~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 --------------------------------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --------------------------------CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred --------------------------------ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 24556888999999999999999665 88884
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-41 Score=311.55 Aligned_cols=300 Identities=18% Similarity=0.309 Sum_probs=228.4
Q ss_pred cccC-cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 30 ~h~~-~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
.|.+ .|++++|+|+|++||+|+.|++|+||++.++... .......+|.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~------- 61 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ------- 61 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS-------
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC-------
Confidence 4766 8999999999999999999999999999876421 0122346888
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++| +|++++|++++.|+++++|++..+.....
T Consensus 62 -----~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~------------------------------------ 98 (345)
T 3fm0_A 62 -----RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECV------------------------------------ 98 (345)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEE------------------------------------
T ss_pred -----CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEE------------------------------------
Confidence 89999999 67899999999999999999987643221
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
.. +.+|...|.+++|+|++++|++| .|++|++||++.......+ ..+.+|...|.+++|+|++ .
T Consensus 99 --------~~-~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~~p~~-~ 163 (345)
T 3fm0_A 99 --------TT-LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV-----SVLNSHTQDVKHVVWHPSQ-E 163 (345)
T ss_dssp --------EE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE-----EEECCCCSCEEEEEECSSS-S
T ss_pred --------EE-ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE-----EEecCcCCCeEEEEECCCC-C
Confidence 11 37899999999999999999999 9999999999854332111 1356899999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
+|++++.|+.|++||.+.+... ....+. +|...|.+++|+|+|++|++++ |+.|++||....+.
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~--~~~~~~-------------~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWV--CCATLE-------------GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN 228 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEE--EEEEEC-------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC
T ss_pred EEEEEeCCCcEEEEEecCCCEE--EEEEec-------------CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC
Confidence 9999999999999999876421 012333 4688999999999999999986 59999999753221
Q ss_pred --------------eeeeeec-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368 347 --------------PVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 411 (487)
Q Consensus 347 --------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 411 (487)
++..+.+ |.. . |++++|+|++..|++++.|+.|++|+...+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~h~~------------~---v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~----- 288 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLSGFHSR------------T---IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ----- 288 (345)
T ss_dssp TTCCCCC---CEEEEEEEECSSCSS------------C---EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT-----
T ss_pred CccceeeccCCccceeEEecCCCCC------------c---EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc-----
Confidence 1112222 222 2 3699999999999999999999999997652210
Q ss_pred cCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCC-EEEEecCCe-EEEEe
Q 011368 412 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN-LIACANGNS-LFFHY 486 (487)
Q Consensus 412 ~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~s~~~-~~i~~ 486 (487)
...+.. ......+|...|++++|+|++. +||+|+.|+ +++|+
T Consensus 289 ------~~~~~~---------------------------~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 289 ------QPTFSL---------------------------TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp ------SCCEEE---------------------------EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ------eeeEEE---------------------------EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 000000 0011236778999999999984 899988665 88986
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.5e-40 Score=300.42 Aligned_cols=286 Identities=22% Similarity=0.386 Sum_probs=233.9
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|++++|++|+.||.|++|+..+++. ...+.+|.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------------~~~~~~h~------- 65 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---------------------------EKTISGHK------- 65 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS-------
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---------------------------chhhccCC-------
Confidence 45899999999999999999999999999999876643 56788898
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++| +|++++|++++.|+.|++||+.+++....
T Consensus 66 -----~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~------------------------------------ 102 (312)
T 4ery_A 66 -----LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKT------------------------------------ 102 (312)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred -----CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEE------------------------------------
Confidence 88999999 57899999999999999999998765443
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+.+|...|.+++|+|++++|++| .|+.|++||+++.. .... +..|...|.+++|+|++ .
T Consensus 103 -----------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~-------~~~~~~~v~~~~~~~~~-~ 162 (312)
T 4ery_A 103 -----------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKT-------LPAHSDPVSAVHFNRDG-S 162 (312)
T ss_dssp -----------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEE-------ECCCSSCEEEEEECTTS-S
T ss_pred -----------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEE-------ecCCCCcEEEEEEcCCC-C
Confidence 36899999999999999999999 99999999998543 4332 46788999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
+|++++.||.|++||+++++.. ..+.. .+...+..++|+|++++|++++ |+.|++||+++ ++
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~ 225 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCL----KTLID------------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GK 225 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEE----EEECC------------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT-TE
T ss_pred EEEEEeCCCcEEEEECCCCcee----eEEec------------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-Cc
Confidence 9999999999999999987643 22222 1346799999999999999986 59999999987 78
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
.+..+.+|..... ++ ......+++.+|++|+.||.|++||+.+++ ....+.
T Consensus 226 ~~~~~~~~~~~~~---------~~---~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~---------------- 276 (312)
T 4ery_A 226 CLKTYTGHKNEKY---------CI---FANFSVTGGKWIVSGSEDNLVYIWNLQTKE-IVQKLQ---------------- 276 (312)
T ss_dssp EEEEECSSCCSSS---------CC---CEEEECSSSCEEEECCTTSCEEEEETTTCC-EEEEEC----------------
T ss_pred EEEEEEecCCceE---------EE---EEEEEeCCCcEEEEECCCCEEEEEECCCch-hhhhhh----------------
Confidence 8888887765431 11 123334688999999999999999998763 233333
Q ss_pred cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec---CCeEEEEeC
Q 011368 427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFHYA 487 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s---~~~~~i~~~ 487 (487)
+|...|..++|+|++++||+++ +..+.+|..
T Consensus 277 ------------------------------~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 277 ------------------------------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp ------------------------------CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred ------------------------------ccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 3445788899999999999886 445888863
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.9e-39 Score=299.53 Aligned_cols=301 Identities=17% Similarity=0.231 Sum_probs=229.5
Q ss_pred ccccCcEEEEEE-----cC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCc
Q 011368 29 LQDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (487)
Q Consensus 29 ~~h~~~V~~~~~-----s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (487)
.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+.+.. .........+.+|.
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------------~~~~~~~~~l~~h~- 76 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------------GYFGIPHKALTGHN- 76 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------------SBSEEEEEEECCCS-
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------------cccccccchhccCC-
Confidence 358999999999 77 8999999999999999999765421 00123467789999
Q ss_pred ccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 103 ~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
..|.+++| ++++.++++++.|++|++||+.+++....
T Consensus 77 -----------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~------------------------------ 113 (343)
T 2xzm_R 77 -----------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTYKR------------------------------ 113 (343)
T ss_dssp -----------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEEEE------------------------------
T ss_pred -----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEE------------------------------
Confidence 89999999 57899999999999999999998865443
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
+.+|...|.+++|+|++++|+++ .|+.|++||+. ....... ....+|...|.+++|
T Consensus 114 -----------------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~-----~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 114 -----------------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS-----AEKENHSDWVSCVRY 170 (343)
T ss_dssp -----------------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC-----CTTTSCSSCEEEEEE
T ss_pred -----------------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee-----ecccCCCceeeeeee
Confidence 37899999999999999999999 99999999998 3322221 234578899999999
Q ss_pred ecCCC---------CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 262 HPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 262 ~p~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
+|++. .+|++++.|+.|++||... ... ..+.. |...|.+++|+|+|++|++|+
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----~~~~~-------------h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR----YTFKA-------------HESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE----EEEEC-------------CSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee----EEEcC-------------ccccceEEEECCCCCEEEEEc
Confidence 99752 5899999999999999432 211 34444 578999999999999999986
Q ss_pred -CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee-EEEe
Q 011368 333 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVE 410 (487)
Q Consensus 333 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~ 410 (487)
|+.|++||+.....+...+... .. +.+++|+|++++++++ .|+.|++|++.+++... ..+.
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~~~~-~~---------------v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~ 295 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREFDAG-ST---------------INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIE 295 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEEECS-SC---------------EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECC
T ss_pred CCCeEEEEECCCCcccceeecCC-Cc---------------EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEee
Confidence 6999999995434444444322 21 2699999999887655 57789999998764321 0111
Q ss_pred ccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 411 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
.+ + .. ......+|...|.+++|+|+|++||+|+.|+ +++|+
T Consensus 296 ~~----------~--~~-----------------------~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 296 AE----------P--IT-----------------------KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp CC----------S--GG-----------------------GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred cC----------c--ch-----------------------hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 00 0 00 1112235677899999999999999999665 88886
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-40 Score=314.38 Aligned_cols=282 Identities=20% Similarity=0.341 Sum_probs=213.2
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc-----
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE----- 103 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----- 103 (487)
+.|...|+|++|+|+|++||+|+ ++.++||++.+++. ...+.+|...
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---------------------------~~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---------------------------VARLSDDSAANKDPE 112 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---------------------------EEEECC---------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---------------------------EEEecCccccccccc
Confidence 35999999999999999999987 68999999987754 2233332200
Q ss_pred -cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 104 -FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 104 -~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
+........+..|.+++| +|++++|++++.|++|++||+.+++....
T Consensus 113 ~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~------------------------------ 160 (393)
T 1erj_A 113 NLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMI------------------------------ 160 (393)
T ss_dssp --------CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE------------------------------
T ss_pred cccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEE------------------------------
Confidence 000000011145999999 68999999999999999999998765443
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
+.+|...|.+++|+|++++|+++ .|++|++||++++ .+...+ .+...+.+++|
T Consensus 161 -----------------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~--------~~~~~v~~~~~ 214 (393)
T 1erj_A 161 -----------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTL--------SIEDGVTTVAV 214 (393)
T ss_dssp -----------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEE--------ECSSCEEEEEE
T ss_pred -----------------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-eeEEEE--------EcCCCcEEEEE
Confidence 37899999999999999999999 9999999999854 333322 24567999999
Q ss_pred ec-CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEE
Q 011368 262 HP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 339 (487)
Q Consensus 262 ~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iw 339 (487)
+| ++ .+|++++.|+.|++||++++... ..+.. ......+|...|.+++|+|+|++|++|+ |+.|++|
T Consensus 215 ~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 215 SPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp CSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecc------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 99 77 99999999999999999987644 22221 0111245788999999999999999986 6999999
Q ss_pred eCCCC-----------CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEE
Q 011368 340 DIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 408 (487)
Q Consensus 340 d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~ 408 (487)
|++.. +.+...+.+|...+ ++++|+|++++|++|+.|+.|++||+.+++ ....
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~-~~~~ 347 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLM 347 (393)
T ss_dssp EC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEE
Confidence 99752 12334455565533 699999999999999999999999999874 4677
Q ss_pred EeccCCccccceEee
Q 011368 409 VEAGKNENRKPILQA 423 (487)
Q Consensus 409 ~~~~~~~v~~~~~~~ 423 (487)
+.+|...|.++++.+
T Consensus 348 l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 348 LQGHRNSVISVAVAN 362 (393)
T ss_dssp EECCSSCEEEEEECS
T ss_pred ECCCCCCEEEEEecC
Confidence 788888777777765
No 18
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-41 Score=323.65 Aligned_cols=338 Identities=11% Similarity=0.172 Sum_probs=262.8
Q ss_pred ccccCcEEEEEEcCCCC-EEEEE----------ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee
Q 011368 29 LQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~-~l~~g----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (487)
+.+...|.+++|+|+++ +|++| +.|+.|+||++.+++.. +....+
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~~~ 64 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIASL 64 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSCCC
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEEEE
Confidence 34566899999999997 99999 88999999999876421 011112
Q ss_pred cCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccccc
Q 011368 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (487)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (487)
.|. ..|.+++| ++++.+|++++.|+.|++||+.......
T Consensus 65 -~~~------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~-------------------------- 103 (416)
T 2pm9_A 65 -QVD------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAI-------------------------- 103 (416)
T ss_dssp -CCS------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCC--------------------------
T ss_pred -ecC------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccc--------------------------
Confidence 355 88999999 5789999999999999999998721000
Q ss_pred CCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCC------ceeEEeecCCCCC
Q 011368 178 NPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD------QCFNIVDMKPSNM 249 (487)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~------~~~~~~~~~~~~~ 249 (487)
.... .+.+|...|.+++|+|+ +++|+++ .|+.|++||+.+.. .... ...+
T Consensus 104 ----------------~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~ 161 (416)
T 2pm9_A 104 ----------------NSMA-RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT-----PGQS 161 (416)
T ss_dssp ----------------CEEE-ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC-----CCCS
T ss_pred ----------------cchh-hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc-----cccc
Confidence 0011 13789999999999998 8999999 99999999998654 2221 1234
Q ss_pred CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEE
Q 011368 250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHL 328 (487)
Q Consensus 250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l 328 (487)
..|...|.+++|+|++..+|++++.|+.|++||+++++.. ..+..|. ...+|...|.+++|+|++ .++
T Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTS-------PNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCC-------CSSCCCCCEEEEEECSSCTTEE
T ss_pred cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEeccc-------cccccCCceEEEEECCCCCCEE
Confidence 6788999999999994389999999999999999987654 4444321 012346789999999997 578
Q ss_pred EEEeC-C---eEEEEeCCCCCceeeeee-cccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCC
Q 011368 329 LSRDY-M---NLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 329 ~s~~d-~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+++++ + .|++||+++...++..+. +|...+ ++++|+| ++++|++++.||.|++||+.++
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI---------------LSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE---------------EEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred EEEECCCCCceEEEEeCCCCCCCcEEeecCccCce---------------eEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 87764 6 999999987446777777 776644 6999999 9999999999999999999987
Q ss_pred CceeEEEeccCCccccceEeeCCcc-ccccccceeeecccce-ecCCCCCccc--cc-----------------------
Q 011368 403 SAGGITVEAGKNENRKPILQAAPRA-RRSSLSNLTRGLYRQA-HENSSSGHHE--LS----------------------- 455 (487)
Q Consensus 403 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~l~~g~~~~~-~~w~~~~~~~--~~----------------------- 455 (487)
.....+.+|...+..++|+| ++ .+ +++++.|+. ++|+...... ..
T Consensus 296 -~~~~~~~~~~~~v~~~~~s~--~~~~~-----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (416)
T 2pm9_A 296 -EQLSQFPARGNWCFKTKFAP--EAPDL-----FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREES 367 (416)
T ss_dssp -CEEEEEECSSSCCCCEEECT--TCTTE-----EEECCSSSEEEEEESCCCCCSSCC----------------------C
T ss_pred -ccceeecCCCCceEEEEECC--CCCCE-----EEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccc
Confidence 55788999999999999998 44 56 899999999 9994432211 10
Q ss_pred ------------cccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 456 ------------YNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 456 ------------~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
..+..++..++|+|||++||+++.|+ ++||++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 368 KEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp CSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 01567788999999999999999665 888864
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.2e-40 Score=311.92 Aligned_cols=304 Identities=15% Similarity=0.191 Sum_probs=240.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+|.+.|++++|+|++++|++|+.||+|+|||..+++. ...+.+|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~---------------------------~~~~~~h~------ 108 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK---------------------------THAIKLHC------ 108 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---------------------------EEEEECCC------
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------------------------ceEEecCC------
Confidence 446999999999999999999999999999999876653 57788898
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| +|++++|++++.|+.+++|++........
T Consensus 109 ------~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~----------------------------------- 145 (380)
T 3iz6_a 109 ------PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG----------------------------------- 145 (380)
T ss_dssp ------TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC-----------------------------------
T ss_pred ------CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC-----------------------------------
Confidence 88999999 68999999999999999999975431100
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-C
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-I 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~ 264 (487)
.......+.+|.+.|.++.|.|+ +..|++| .|++|++||+.++ .....+.. ....+|...|.+++|+| +
T Consensus 146 -----~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~--~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 146 -----NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-QRISIFGS--EFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp -----SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC-CEEEEECC--CSSSSCCSCEEEEEECSSS
T ss_pred -----CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC-cEEEEeec--ccCCCCccCeEEEEeecCC
Confidence 00011114799999999999996 4568888 9999999999954 44443311 12357889999999987 5
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
+ .+|++|+.|+.|++||++..... ...+.+ |...|.+++|+|++++|++|+ |++|++||+++
T Consensus 218 ~-~~l~sgs~D~~v~~wd~~~~~~~---~~~~~~-------------h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 218 A-NMFISGSCDTTVRLWDLRITSRA---VRTYHG-------------HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp C-CEEEEEETTSCEEEEETTTTCCC---CEEECC-------------CSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred C-CEEEEEECCCeEEEEECCCCCcc---eEEECC-------------cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 5 99999999999999999854211 244555 578999999999999999986 59999999997
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEE----eccCCccccc
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV----EAGKNENRKP 419 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~ 419 (487)
+..+..+..+..... .....+++++|+|+|++|++|+.||.|++||+.+++. ...+ .+|...|.++
T Consensus 281 -~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 281 -GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp -TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE-EEEECCSCSSCCCCCCEE
T ss_pred -CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce-EEEEecccCCCCCceEEE
Confidence 777777765432110 0011135999999999999999999999999988743 4444 6899999999
Q ss_pred eEeeCCccccccccceeeecccce-ecCCCC
Q 011368 420 ILQAAPRARRSSLSNLTRGLYRQA-HENSSS 449 (487)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~ 449 (487)
+++| ++.. |++|+.|+. ++|...
T Consensus 351 ~~s~--dg~~-----l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 351 GLSS--DGSA-----LCTGSWDKNLKIWAFS 374 (380)
T ss_dssp EECS--SSSE-----EEEECTTSCEEEEECC
T ss_pred EECC--CCCE-----EEEeeCCCCEEEEecC
Confidence 9998 6777 999999999 999543
No 20
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.9e-40 Score=314.07 Aligned_cols=329 Identities=12% Similarity=0.129 Sum_probs=254.3
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
+.+++++|+|++++|++|+.||.|++||+.+++.. ..+..|.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------~~~~~~~----------- 98 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------KMLKRAD----------- 98 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------TTSCSCC-----------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------eEEecCC-----------
Confidence 34568999999999999999999999998876542 2233332
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
+..+.+. ++++++|++++.|+.|++||+.+++....
T Consensus 99 ---~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------------- 134 (420)
T 3vl1_A 99 ---YTAVDTA-KLQMRRFILGTTEGDIKVLDSNFNLQREI---------------------------------------- 134 (420)
T ss_dssp ---EEEEEEE-CSSSCEEEEEETTSCEEEECTTSCEEEEE----------------------------------------
T ss_pred ---ceEEEEE-ecCCCEEEEEECCCCEEEEeCCCcceeee----------------------------------------
Confidence 4444433 58899999999999999999987765443
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
+.+|...|++++|+|++++|+++ .|+.|++||+.+... .. .+.+|...|.+++|+|++ .+|++
T Consensus 135 -------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~-------~~~~h~~~v~~~~~~~~~-~~l~s 198 (420)
T 3vl1_A 135 -------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PR-------TLIGHRATVTDIAIIDRG-RNVLS 198 (420)
T ss_dssp -------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CE-------EEECCSSCEEEEEEETTT-TEEEE
T ss_pred -------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ce-------EEcCCCCcEEEEEEcCCC-CEEEE
Confidence 36899999999999999999999 999999999985543 32 246899999999999999 99999
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCcc-----------ccccccccceeEEEEcCCCCEEEEEe-CCeEEEE
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----------SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 339 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----------~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iw 339 (487)
++.|+.|++||+++++.. ..+..|....... .....+...+.+++|+|++++|++++ ||.|++|
T Consensus 199 ~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp EETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred EcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 999999999999988754 4554421111110 01122346677778899999999986 5999999
Q ss_pred eCCCCCceeeeee-cccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCCCceeEEEec-cCCcc
Q 011368 340 DIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGITVEA-GKNEN 416 (487)
Q Consensus 340 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v 416 (487)
|+++ +..+..+. .|...+ ++++|+|+++ +|++|+.||.|++||+.+++.....+.. |..++
T Consensus 275 d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 338 (420)
T 3vl1_A 275 NVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI 338 (420)
T ss_dssp ETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE
T ss_pred ECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc
Confidence 9987 55555543 344433 6999999999 9999999999999999998666677776 66667
Q ss_pred ccceEeeCCccccccccceeeecccce-ecCCCCC-----------ccccccccCCCeEEEEEcCCCC----EEEEecCC
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-----------HHELSYNLSSKLLHLAWHPTTN----LIACANGN 480 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~-----------~~~~~~~~~~~v~~~~~spd~~----~la~~s~~ 480 (487)
..+.+ + ++.+ |++++.|+. ++|+... .......+...|.+++|+|+++ ++++|+.+
T Consensus 339 ~~~~~-~--~~~~-----l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 339 NNVYF-A--AGAL-----FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp EEEEE-E--TTEE-----EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred eEEEe-C--CCCE-----EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 77754 4 4556 999999999 9994322 1223457788999999999999 77788888
Q ss_pred eEEEEeC
Q 011368 481 SLFFHYA 487 (487)
Q Consensus 481 ~~~i~~~ 487 (487)
.+.+|+.
T Consensus 411 ~~~~~~~ 417 (420)
T 3vl1_A 411 FCALYNL 417 (420)
T ss_dssp EEEEEES
T ss_pred eEEEEec
Confidence 8889974
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-39 Score=299.98 Aligned_cols=298 Identities=15% Similarity=0.202 Sum_probs=217.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-cC-CCccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDY 106 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~ 106 (487)
..|.++|++++|+|+ +||+|+.|++|+||++.++. .+....+ .+ |.
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-------------------------~~~~~~~~~~~h~----- 58 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-------------------------FTLIDVLDETAHK----- 58 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-------------------------CEEEEEECTTCCC-----
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-------------------------eEEEEEEecCCcc-----
Confidence 358999999999987 99999999999999987652 1223444 34 87
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|.+++| +|++.+|++++.|++|++||+.........
T Consensus 59 -------~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~~--------------------------------- 96 (330)
T 2hes_X 59 -------KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFE--------------------------------- 96 (330)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------CC---------------------------------
T ss_pred -------CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCcccc---------------------------------
Confidence 88999999 578999999999999999998643210000
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
...... +.+|...|.+++|+|++++|++| .|++|++||++..+...+.+ ..+.+|...|.+++|+|++
T Consensus 97 ------~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~----~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 97 ------MDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI----SVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp ------CEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE----EEECCCSSCEEEEEECSSS
T ss_pred ------ceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE----EEeccCCCceEEEEECCCC
Confidence 001111 37899999999999999999999 99999999995333222111 1357899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEe-CCeEEEEeCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD-YMNLKLWDIR 342 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~-d~~i~iwd~~ 342 (487)
.+|++++.|+.|++||.+++.. .....+.+ |...|.+++|+|+ +.+|++++ |++|++||++
T Consensus 166 -~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~-------------h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 166 -ALLASSSYDDTVRIWKDYDDDW--ECVAVLNG-------------HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp -SEEEEEETTSCEEEEEEETTEE--EEEEEECC-------------CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred -CEEEEEcCCCeEEEEECCCCCe--eEEEEccC-------------CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 9999999999999999886521 11134444 5889999999998 67888886 6999999986
Q ss_pred CCC-------ceeeeeec-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce--eEEEecc
Q 011368 343 MDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEAG 412 (487)
Q Consensus 343 ~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~ 412 (487)
... .....+.. |... |++++|++++ +|++++.||.|+||+..+++.. ...+.+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQ---------------VYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSC---------------EEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred CCCccccceeEEeeecccccccc---------------eEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence 421 22233332 4432 2699999765 8999999999999999877422 2334678
Q ss_pred CC-ccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368 413 KN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 413 ~~-~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
.. .+..++++|..++.+ |++|+.|+. ++|+.
T Consensus 294 ~~~~v~~v~~~~~~~~~~-----las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTI-----LATGGDDGIVNFWSL 326 (330)
T ss_dssp TTSCEEEEEEC-----CC-----EEEEETTSEEEEEEC
T ss_pred ccceEEEEEEecCCCceE-----EEEecCCCcEEEEEe
Confidence 77 899999998655667 999999999 99954
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=312.52 Aligned_cols=330 Identities=14% Similarity=0.160 Sum_probs=257.9
Q ss_pred ccccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEe----eCCcCCCCcccchhhhhccccccccCCCcceeEeeecC--
Q 011368 27 EELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-- 99 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 99 (487)
....|.+.|++++|+|+++ +||+|+.||.|++|++ .+++.. -.+ .+.......+.+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-------WKL----------TIIAELRHPFALSA 102 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-------EEE----------EEEEEEECCCCCC-
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-------ccc----------cccccccccccccc
Confidence 4455678999999999999 9999999999999999 666520 000 000111111222
Q ss_pred ----CCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccc
Q 011368 100 ----HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (487)
Q Consensus 100 ----h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (487)
|. +.|.+++| +|++++|++++.|+.|++||. +++....
T Consensus 103 ~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~-~~~~~~~----------------------- 144 (425)
T 1r5m_A 103 SSGKTT------------NQVTCLAW--SHDGNSIVTGVENGELRLWNK-TGALLNV----------------------- 144 (425)
T ss_dssp -----C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSCEEEE-----------------------
T ss_pred cccCCC------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeC-CCCeeee-----------------------
Confidence 45 78999999 578999999999999999994 3333222
Q ss_pred ccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368 176 EHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 254 (487)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 254 (487)
+..|...|.+++|+|++++|+++ .|+.|++||+.+. .....+ ..+..
T Consensus 145 ------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-------~~~~~ 192 (425)
T 1r5m_A 145 ------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG-TVMQHF-------ELKET 192 (425)
T ss_dssp ------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-EEEEEE-------CCC--
T ss_pred ------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEEEe-------ecccc
Confidence 36899999999999999999999 9999999999844 444332 22333
Q ss_pred c---------------EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEE
Q 011368 255 V---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 319 (487)
Q Consensus 255 ~---------------v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v 319 (487)
. +.++.|+|++ .+++++.+|.|++||+++++.. ..+.. |...|.++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~----~~~~~-------------~~~~i~~~ 253 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT----GKLIG-------------HHGPISVL 253 (425)
T ss_dssp -------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----EEECC-------------CSSCEEEE
T ss_pred CccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----eeecc-------------CCCceEEE
Confidence 3 8899999985 6899999999999999987544 44444 46889999
Q ss_pred EEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368 320 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 320 ~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd 398 (487)
+|+|++++|++++ ++.|++||++. ++.+..+..|...+ .+++|+|++ +|++++.||.|++||
T Consensus 254 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSI---------------VSASWVGDD-KVISCSMDGSVRLWS 316 (425)
T ss_dssp EEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCE---------------EEEEEETTT-EEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccE---------------EEEEECCCC-EEEEEeCCCcEEEEE
Confidence 9999999999986 59999999987 77788887776644 699999999 999999999999999
Q ss_pred eCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC--C--------------------ccccc
Q 011368 399 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G--------------------HHELS 455 (487)
Q Consensus 399 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~--~--------------------~~~~~ 455 (487)
+.++ .....+..|..++..+.++| ++.+ +++++.++. .+|+.. . .....
T Consensus 317 ~~~~-~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (425)
T 1r5m_A 317 LKQN-TLLALSIVDGVPIFAGRISQ--DGQK-----YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY 388 (425)
T ss_dssp TTTT-EEEEEEECTTCCEEEEEECT--TSSE-----EEEEETTSCEEEEECHHHHC--------------CEECCEEEEE
T ss_pred CCCC-cEeEecccCCccEEEEEEcC--CCCE-----EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh
Confidence 9887 55778889999999999998 5666 999999998 999443 2 34455
Q ss_pred cccCC--CeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 456 YNLSS--KLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 456 ~~~~~--~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
..|.. .|.+++|+|++++||+++.|+ +++|+.
T Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 389 QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred cCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 56765 999999999999999988665 999974
No 23
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.9e-38 Score=318.38 Aligned_cols=387 Identities=12% Similarity=0.120 Sum_probs=291.3
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|+|++|++++ ++.|+||++.++.. ..+....+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence 35788999999999999999998 78999999987611 112357889998
Q ss_pred ccccccc-eeEEEEEecC--CCcEEEEEeCCCcEEEEEcccc------ceeEeee-cCCCCceeeeeccccccccccccC
Q 011368 109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKE-MDHFPFVSSENTLLAEKNFMNEHN 178 (487)
Q Consensus 109 ~~~~~~~-I~~v~~~~~~--~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 178 (487)
.. |.+++| +| ++++|++++.|+.|++||+.++ ....... ......+.++.+.+ ++..++.+.
T Consensus 64 -----~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 135 (615)
T 1pgu_A 64 -----SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVG 135 (615)
T ss_dssp -----TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred -----CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEec
Confidence 88 999999 57 8999999999999999999755 2222222 22455677777765 445555554
Q ss_pred CCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC--
Q 011368 179 PPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-- 254 (487)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-- 254 (487)
...........|+.......+ .+|...|.+++|+|+++ .++++ .|+.|++||+.+ ...... +.+|..
T Consensus 136 ~~~~~~~~v~~~d~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~-------~~~~~~~~ 206 (615)
T 1pgu_A 136 EGRDNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSAS-------DRTHHKQG 206 (615)
T ss_dssp CCSSCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEE-------ECSSSCTT
T ss_pred cCCCCccEEEEEECCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-cceeee-------ecccCCCC
Confidence 444444556667766666665 89999999999999998 78888 999999999984 444432 467888
Q ss_pred -cEEEEEEecC-CCCEEEEEeCCCeEEEEEccCCccccccceee-cccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368 255 -VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 331 (487)
Q Consensus 255 -~v~~v~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 331 (487)
.|.+++|+|+ + .+|++++.||.|++||+++++.. ..+ .. ...|...|.+++|+ ++++|+++
T Consensus 207 ~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----------~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 207 SFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----------QEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp CCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT----------TBCCCSCEEEEEES-SSSEEEEE
T ss_pred ceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc----------ccccCCceEEEEEc-CCCEEEEE
Confidence 8999999999 8 99999999999999999987654 344 20 01357889999999 99999988
Q ss_pred e-CCeEEEEeCCCCCceeeeeecc---------------------------------------------ccccc------
Q 011368 332 D-YMNLKLWDIRMDSTPVATFKIH---------------------------------------------EHLRP------ 359 (487)
Q Consensus 332 ~-d~~i~iwd~~~~~~~~~~~~~~---------------------------------------------~~~~~------ 359 (487)
+ |+.|++||+++ ++.+..+..+ ...+.
T Consensus 271 ~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 349 (615)
T 1pgu_A 271 GADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349 (615)
T ss_dssp ETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT
T ss_pred cCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC
Confidence 6 59999999875 4443333322 00000
Q ss_pred ----------------------------------------------ccccc-----------------------------
Q 011368 360 ----------------------------------------------KLCDL----------------------------- 364 (487)
Q Consensus 360 ----------------------------------------------~~~~~----------------------------- 364 (487)
.++++
T Consensus 350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 429 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 429 (615)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEE
T ss_pred cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCce
Confidence 00000
Q ss_pred -----------------------------------------------------cCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 365 -----------------------------------------------------YNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 365 -----------------------------------------------------~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
.-......+++++|+|++++|++|+.|
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 509 (615)
T 1pgu_A 430 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 509 (615)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC
Confidence 000011135789999999999999999
Q ss_pred CcEEEEEeCCCCceeEEEec-cCCccccceEeeCC--------ccccccccceeeecccce-ecCCCC---Ccccccccc
Q 011368 392 NLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAP--------RARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNL 458 (487)
Q Consensus 392 g~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~--------~~~~~~~~~l~~g~~~~~-~~w~~~---~~~~~~~~~ 458 (487)
|.|++||+.+++ ....+.+ |...+.+++|+|.. ++++ |++|+.|+. ++|+.. .......+|
T Consensus 510 g~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~-----l~~~~~dg~i~iw~~~~~~~~~~~~~~h 583 (615)
T 1pgu_A 510 GKILLYDLQSRE-VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL-----VATGSLDTNIFIYSVKRPMKIIKALNAH 583 (615)
T ss_dssp SCEEEEETTTTE-EEECCSCCCSSCEEEEEECCCC------CCSCCE-----EEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred CeEEEeeCCCCc-ceeEeecCCCCceeEEEEcCccccccccccCCCE-----EEEEcCCCcEEEEECCCCceechhhhcC
Confidence 999999999884 4566776 99999999999832 5666 999999999 999443 445566789
Q ss_pred CCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 459 SSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 459 ~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
...|.+++|+||++ |++++.|+ +++|+.
T Consensus 584 ~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 584 KDGVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp TTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred ccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 99999999999999 99888665 999973
No 24
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-38 Score=346.67 Aligned_cols=372 Identities=14% Similarity=0.199 Sum_probs=276.1
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|++++|+|+|++||+|+.||+|+|||+.+++. +..+.+|.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~---------------------------~~~~~~h~------ 657 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK---------------------------LLDIKAHE------ 657 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS------
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEeccCC------
Confidence 346999999999999999999999999999999987754 57788998
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc-ccccccccCCCCcceee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (487)
..|.+++| +|++++|++++.|++|++||+.+++...... .....+.++.+.+. +..+++.+..+...
T Consensus 658 ------~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v--- 725 (1249)
T 3sfz_A 658 ------DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFL--- 725 (1249)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCE---
T ss_pred ------CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeE---
Confidence 89999999 6889999999999999999999987766544 34556777777764 33444444443332
Q ss_pred eeeee--ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCC-----------------
Q 011368 187 HLEWT--ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP----------------- 246 (487)
Q Consensus 187 ~~~~~--~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~----------------- 246 (487)
..|+ ...+...+ .+|...|++++|+|++++++++ .|+.|++||+.+.. ....+....
T Consensus 726 -~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 726 -KLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN-ERKSINVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp -EEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE-EEEEEECCCCC--------CCCCCBC
T ss_pred -EEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc-ccceecccccccccCCccccccceEE
Confidence 2243 33444444 7899999999999999999999 99999999998543 222211100
Q ss_pred -------------------------------CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee
Q 011368 247 -------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 295 (487)
Q Consensus 247 -------------------------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 295 (487)
....+|...|.+++|+|++ .++++++.||.|++||+.++... ..
T Consensus 803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~----~~ 877 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKV----AD 877 (1249)
T ss_dssp CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEE----EE
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCcee----ee
Confidence 0012677889999999999 99999999999999999987643 44
Q ss_pred ecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC-------------------------------
Q 011368 296 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM------------------------------- 343 (487)
Q Consensus 296 ~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~------------------------------- 343 (487)
+.+ |...|.+++|+|+|++|++++ |+.|++||+..
T Consensus 878 ~~~-------------h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1249)
T 3sfz_A 878 CRG-------------HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944 (1249)
T ss_dssp ECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred cCC-------------CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence 444 356667777777776666654 46666666431
Q ss_pred -----------------------------------------------CCceeeeeecccccccccccccCCCCcceeeEE
Q 011368 344 -----------------------------------------------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 376 (487)
Q Consensus 344 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
.+..+..+.+|... |+++
T Consensus 945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~---------------v~~l 1009 (1249)
T 3sfz_A 945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA---------------VRHI 1009 (1249)
T ss_dssp SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC---------------CCCE
T ss_pred ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc---------------eEEE
Confidence 02222222223222 2578
Q ss_pred EEcCCCCEEEEEcCCCcEEEEEeCCCC---------------------------------------ceeEEEeccCCccc
Q 011368 377 SVSGDGLHFATGSYSNLLRIFSHGVGS---------------------------------------AGGITVEAGKNENR 417 (487)
Q Consensus 377 ~~s~d~~~l~sg~~dg~i~iwd~~~~~---------------------------------------~~~~~~~~~~~~v~ 417 (487)
+|+|+|++|++++.||.|++||+.+++ .....+.+|...+.
T Consensus 1010 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 1089 (1249)
T 3sfz_A 1010 QFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1089 (1249)
T ss_dssp EECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCC
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEE
Confidence 888888888888888877777766532 22445667888899
Q ss_pred cceEeeCCccccccccceeeecccce-ecCCC--CCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 418 KPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
+++++| ++.. +++++.|+. ++|+. +.......+|...|.+++|+||+++||+++.|+ +++|+.
T Consensus 1090 ~~~~s~--d~~~-----l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1090 SCAISS--DATK-----FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp CEEECS--SSSS-----CEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred EEEECC--CCCE-----EEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 999988 6666 999999999 99943 455666778999999999999999999999765 899973
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-39 Score=306.66 Aligned_cols=301 Identities=15% Similarity=0.160 Sum_probs=241.5
Q ss_pred cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (487)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (487)
......++++|. +.|.+++| +|++++|++|+.|++|++||+.+++....
T Consensus 55 ~~~~~~~l~gH~------------~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~~----------------- 103 (380)
T 3iz6_a 55 DLVCCRTLQGHS------------GKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQKTHA----------------- 103 (380)
T ss_dssp CCEEEEEECCCS------------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEEEEE-----------------
T ss_pred eeEEeecccccc------------cEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccceE-----------------
Confidence 345678899999 99999999 57899999999999999999988765443
Q ss_pred ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC
Q 011368 170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 248 (487)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 248 (487)
+..|...|.+++|+|++++|++| .|+.|++|++.......... .....
T Consensus 104 ------------------------------~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~-~~~~~ 152 (380)
T 3iz6_a 104 ------------------------------IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM-PVSRV 152 (380)
T ss_dssp ------------------------------EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS-TTCCB
T ss_pred ------------------------------EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc-cceee
Confidence 36889999999999999999999 99999999997432110000 00134
Q ss_pred CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCE
Q 011368 249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQH 327 (487)
Q Consensus 249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 327 (487)
+.+|...|.++.|.|++...|++++.|+.|++||+++++.. ..+.. ....+|...|.++.|++ ++.+
T Consensus 153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----~~~~~--------~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI----SIFGS--------EFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE----EEECC--------CSSSSCCSCEEEEEECSSSCCE
T ss_pred ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE----EEeec--------ccCCCCccCeEEEEeecCCCCE
Confidence 67899999999999986478999999999999999988654 33321 01235688999999987 7889
Q ss_pred EEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368 328 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 406 (487)
Q Consensus 328 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~ 406 (487)
|++|+ |+.|++||++.....+..+.+|...+ ++++|+|++++|++|+.||+|++||+.++.. .
T Consensus 221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-~ 284 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDI---------------NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-L 284 (380)
T ss_dssp EEEEETTSCEEEEETTTTCCCCEEECCCSSCC---------------CEEEECTTSSEEEEECSSSCEEEEETTTTEE-E
T ss_pred EEEEECCCeEEEEECCCCCcceEEECCcCCCe---------------EEEEEecCCCeEEEEcCCCeEEEEECCCCcE-E
Confidence 99986 69999999986567888898888755 5999999999999999999999999998743 4
Q ss_pred EEEeccC-------CccccceEeeCCccccccccceeeecccce-ecCCC--CCccccc----cccCCCeEEEEEcCCCC
Q 011368 407 ITVEAGK-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS----YNLSSKLLHLAWHPTTN 472 (487)
Q Consensus 407 ~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~----~~~~~~v~~~~~spd~~ 472 (487)
..+..+. ..+..++|+| ++.+ +++|+.|+. ++|+. ++..... .+|...|.+++|+|||+
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSI--SGRL-----LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECS--SSSE-----EEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred EEecccccccccccCceEEEEECC--CCCE-----EEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 4554432 2478889988 6777 999999999 99954 3333322 57899999999999999
Q ss_pred EEEEecCCe-EEEEeC
Q 011368 473 LIACANGNS-LFFHYA 487 (487)
Q Consensus 473 ~la~~s~~~-~~i~~~ 487 (487)
+||+|+.|+ ++||+.
T Consensus 358 ~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 358 ALCTGSWDKNLKIWAF 373 (380)
T ss_dssp EEEEECTTSCEEEEEC
T ss_pred EEEEeeCCCCEEEEec
Confidence 999999665 999973
No 26
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-40 Score=319.84 Aligned_cols=341 Identities=12% Similarity=0.035 Sum_probs=236.6
Q ss_pred CccccccCcEEEEEEcCCC---------CEEEEE-------------------ecCCcEEEEEeeCCcCCCCcccchhhh
Q 011368 26 DEELQDVDIVSAIEFDKTG---------DYLAVG-------------------DRGGRVILFETVGGKNTPNQHISRSEL 77 (487)
Q Consensus 26 ~~~~~h~~~V~~~~~s~~~---------~~l~~g-------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~ 77 (487)
+..+.+.+.|.+|+|+|++ ++||+| +.|++|+||++.+++..
T Consensus 127 ~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~---------- 196 (524)
T 2j04_B 127 GFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH---------- 196 (524)
T ss_dssp EEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC----------
T ss_pred eEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC----------
Confidence 3345567889999999986 677764 46789999999877531
Q ss_pred hccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec----CCCcEEEEEeCCCcEEEEEccccceeEee
Q 011368 78 EKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 153 (487)
......+.+|. +.|.+++|+|. +++.+|++++.|++|++||+..+......
T Consensus 197 -------------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~ 251 (524)
T 2j04_B 197 -------------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV 251 (524)
T ss_dssp -------------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred -------------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence 11223456676 88999999764 34679999999999999999866421000
Q ss_pred ecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEc
Q 011368 154 EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 232 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~ 232 (487)
... ...+... +.+|...|++++|++++ .|++| .||+|++||+
T Consensus 252 ~~~-----------------------------------~~~p~~~-l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~ 294 (524)
T 2j04_B 252 FKM-----------------------------------CEKPSLT-LSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDL 294 (524)
T ss_dssp EEC-----------------------------------CCSCSEE-ECCTTTCEEEEEESSSS-EEEEEETTSEEEEEET
T ss_pred cee-----------------------------------ecCceEE-EEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEEC
Confidence 000 0011112 37899999999999864 78998 9999999999
Q ss_pred cCCCceeEEeecCCCCCCCCCCcEEEE--EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccc
Q 011368 233 EISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 310 (487)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 310 (487)
+++..... .+.+|...|.+| .|+|++..+|++++.|++|+|||+++++.. ..+.+|..
T Consensus 295 ~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~~~~~~~--------- 354 (524)
T 2j04_B 295 TDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KTTVSRFR--------- 354 (524)
T ss_dssp TBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CEEEEECS---------
T ss_pred CCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----cccccccc---------
Confidence 86543322 246899999999 467764378999999999999999987644 44444310
Q ss_pred ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368 311 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 389 (487)
Q Consensus 311 ~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~ 389 (487)
...|.+++|+|+++.+++++ |++|++||++. +.++..+.+|...+ ++++|||+|++|++|+
T Consensus 355 --~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 355 --GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TAIGVSRLHPMVLAGS 416 (524)
T ss_dssp --CCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EEEECCSSCCBCEEEE
T ss_pred --cCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EEEEeCCCCCeEEEEE
Confidence 12478999999999999875 59999999987 77777888888755 6999999999999999
Q ss_pred CCCcEEEEEeCCCCceeEEEec-----cCCccccceEeeCCccccccccceeeecccceecC--C-CCCccccccccCCC
Q 011368 390 YSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--S-SSGHHELSYNLSSK 461 (487)
Q Consensus 390 ~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w--~-~~~~~~~~~~~~~~ 461 (487)
.||+|++||+..+ ....++. +...+..++++| ++.. + .. .+...+| + .+.....+.+|...
T Consensus 417 ~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp--~g~~-----~-~~-~~~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 417 ADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSI--KDDK-----Y-RI-DSSYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp TTTEEECCBSCSS--TTTCC------CCCCEEEECBCCS--SSCE-----E-EE-CCCCCCCC-------------CCCS
T ss_pred CCCEEEEEechHh--hccccccCccceeeeEEEEeccCC--CCCe-----E-Ec-cCCceecccccCCcceeeecCCCce
Confidence 9999999998754 1111111 112456777777 3332 2 22 2222344 3 34556677899999
Q ss_pred eEEEEEcCCCC---EEEEecCCe-EEEEeC
Q 011368 462 LLHLAWHPTTN---LIACANGNS-LFFHYA 487 (487)
Q Consensus 462 v~~~~~spd~~---~la~~s~~~-~~i~~~ 487 (487)
|.+|+|||+++ +||+|+.++ ++||..
T Consensus 486 V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp CCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred EEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 99999999965 899999765 889863
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=293.23 Aligned_cols=249 Identities=18% Similarity=0.221 Sum_probs=200.6
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|++++|+|++ .|++|+.||+|+|||+.+++.. ......+.+|.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~------- 127 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD------- 127 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS-------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC-------
Confidence 3456789999999985 6889999999999999988652 22334566898
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
+.|.+|+| +|++++|++|+.|++|++||+.+++....
T Consensus 128 -----~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~~~~~~------------------------------------ 164 (344)
T 4gqb_B 128 -----DIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQVVLSS------------------------------------ 164 (344)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE------------------------------------
T ss_pred -----CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEE------------------------------------
Confidence 89999999 68999999999999999999998876544
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.+|...|++++|+|++. +|++| .|++|++||++++.. ...+ ....+...+.+++|+|++.
T Consensus 165 -----------~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~-----~~~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 165 -----------YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQI-----GCSAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp -----------ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEEC-----C----CCCEEEEEECSSCT
T ss_pred -----------EcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeee-----ecceeeccceeeeecCCCC
Confidence 378999999999999875 67888 999999999995543 3321 2345666799999999765
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEe-CCeEEEEeCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~iwd~~~~ 344 (487)
.+|++|+.||.|++||+++++.+ ..+.+ |...|++++|+|++ ++|++|+ |++|+|||+++
T Consensus 228 ~~l~sg~~dg~v~~wd~~~~~~~----~~~~~-------------h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~- 289 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKSTSCV----LSSAV-------------HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL- 289 (344)
T ss_dssp TEEEEEETTSEEEEEESCC--CC----EEEEC-------------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-
T ss_pred cceEEeccCCcEEEEECCCCcEE----EEEcC-------------CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-
Confidence 88999999999999999988754 55666 47899999999998 5788886 69999999986
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~ 402 (487)
++ +..+.+|...+ ++++|+|+++ +|++|+.||+|++|++.+.
T Consensus 290 ~~-~~~~~~H~~~V---------------~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 290 SE-LFRSQAHRDFV---------------RDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CE-EEEECCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred Cc-EEEEcCCCCCE---------------EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 54 44567887754 6999999886 5679999999999999865
No 28
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-38 Score=328.79 Aligned_cols=324 Identities=16% Similarity=0.168 Sum_probs=265.0
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|++++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~---------------------------~~~~~~~~------- 55 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE---------------------------VRSIQVTE------- 55 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---------------------------EEEEecCC-------
Confidence 35889999999999999999999999999999877653 57788898
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++|+ |++++|++++.|+.|++||+.+++....
T Consensus 56 -----~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~------------------------------------ 92 (814)
T 3mkq_A 56 -----TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVD------------------------------------ 92 (814)
T ss_dssp -----SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred -----CcEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCcEEEE------------------------------------
Confidence 899999995 6899999999999999999998875543
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-CCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYC 266 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~ 266 (487)
+.+|...|++++|+|++++|+++ .|+.|++||+..+...... +.+|...|.+++|+| ++
T Consensus 93 -----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~~~v~~~~~~p~~~- 153 (814)
T 3mkq_A 93 -----------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEHFVMCVAFNPKDP- 153 (814)
T ss_dssp -----------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-------EECCSSCEEEEEEETTEE-
T ss_pred -----------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-------EcCCCCcEEEEEEEcCCC-
Confidence 36799999999999999999999 9999999999865444433 467889999999999 77
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC--CCCEEEEEe-CCeEEEEeCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~s~~-d~~i~iwd~~~ 343 (487)
..|++++.||.|++||++++... ..+..| +...+..++|+| ++.+|++++ ++.|++||+.+
T Consensus 154 ~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 154 STFASGCLDRTVKVWSLGQSTPN----FTLTTG------------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp EEEEEEETTSEEEEEETTCSSCS----EEEECC------------CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred CEEEEEeCCCeEEEEECCCCcce----eEEecC------------CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 89999999999999999876543 333331 246899999999 999999986 59999999987
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
+..+..+..|...+ ++++|+|++++|++++.||.|++||+.++ .....+..|...+..++++|
T Consensus 218 -~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 218 -KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp -TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSEEEEEECT
T ss_pred -CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcEEEEEEcc
Confidence 78888888887654 69999999999999999999999999987 55788889999999999998
Q ss_pred CCccccccccceeeecccceecCCCCCcc---------------------------------------------cccccc
Q 011368 424 APRARRSSLSNLTRGLYRQAHENSSSGHH---------------------------------------------ELSYNL 458 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~---------------------------------------------~~~~~~ 458 (487)
.....+ +++|..++..+|...... .....+
T Consensus 281 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (814)
T 3mkq_A 281 TGRKNY-----IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV 355 (814)
T ss_dssp TCGGGE-----EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC
T ss_pred CCCceE-----EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC
Confidence 533223 555554444555221100 001223
Q ss_pred CCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 459 SSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 459 ~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
...+..++|+|+|++|++++++.+++|.
T Consensus 356 ~~~~~~~~~spdg~~la~~~~~~~~i~~ 383 (814)
T 3mkq_A 356 DVFPQSLAHSPNGRFVTVVGDGEYVIYT 383 (814)
T ss_dssp SSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred ccCCceeEECCCCCEEEEecCCEEEEEE
Confidence 4467899999999999999988899986
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-37 Score=288.53 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=235.8
Q ss_pred cccccCcEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
+.+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+.. .......+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~----- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS----- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS-----
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC-----
Confidence 3469999999999997 689999999999999999876542 344567889999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|.+++| ++++++|++++.|+.|++|+.........
T Consensus 87 -------~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~---------------------------------- 123 (340)
T 4aow_A 87 -------HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRR---------------------------------- 123 (340)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred -------CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeee----------------------------------
Confidence 89999999 68999999999999999999987765443
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
...+...+..+.++++++.|+++ .|+.+++||+..... ... ...+|...+.+++|++++
T Consensus 124 -------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-~~~------~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 124 -------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTV------QDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp -------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEE------CSSSCSSCEEEEEECSCS
T ss_pred -------------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-EEE------EeccccCcccceEEccCC
Confidence 25667778899999999999999 999999999984332 221 356889999999998765
Q ss_pred C-CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 266 C-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 266 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
. .++++++.|+.|++||+++++.. ..+.+ |...|.+++|+|++++|++|+ |+.|++||+++
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~----~~~~~-------------h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLK----TNHIG-------------HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred CCcEEEEEcCCCEEEEEECCCCcee----eEecC-------------CCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 2 46789999999999999987654 45555 478999999999999999986 69999999987
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
.+++..+..+... ..++|+|++.+ ++++.|+.|++||++++. ....+..+.
T Consensus 247 -~~~~~~~~~~~~v----------------~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~-~~~~~~~~~---------- 297 (340)
T 4aow_A 247 -GKHLYTLDGGDII----------------NALCFSPNRYW-LCAATGPSIKIWDLEGKI-IVDELKQEV---------- 297 (340)
T ss_dssp -TEEEEEEECSSCE----------------EEEEECSSSSE-EEEEETTEEEEEETTTTE-EEEEECCC-----------
T ss_pred -CceeeeecCCceE----------------EeeecCCCCce-eeccCCCEEEEEECCCCe-EEEeccccc----------
Confidence 7778777765532 58999998765 556679999999998762 222222110
Q ss_pred CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
.......|...|++++|+||+++||+|+.|+ ++||++
T Consensus 298 ---------------------------~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 298 ---------------------------ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ---------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ---------------------------eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 1112235677999999999999999999665 999973
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.1e-39 Score=307.68 Aligned_cols=297 Identities=15% Similarity=0.156 Sum_probs=219.8
Q ss_pred ccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 29 ~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~------ 164 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG------ 164 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS------
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC------
Confidence 34778899999999 5679999999999999999876532 345577898
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+.|++|+|+| .++.+|++++.|++|++||+.++.......
T Consensus 165 ------~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------------------------- 204 (435)
T 4e54_B 165 ------GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFAS--------------------------------- 204 (435)
T ss_dssp ------CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEEC---------------------------------
T ss_pred ------CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEec---------------------------------
Confidence 8999999954 367899999999999999998765433211
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
...+...+.+++|+|++++|++| .|+.|++||++ +.. + ..+.+|...|.+++|+|++.
T Consensus 205 ------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~-~-------~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 205 ------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKE-L-------WNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp ------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCB-C-------CCSBCCSSCEEEEEECTTCS
T ss_pred ------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cce-e-------EEEecccceEEeeeecCCCc
Confidence 13445568899999999999999 99999999997 332 1 35778999999999999985
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.+|++++.|+.|++||+++.+.. ..+.. ..+|...|.+++|+|+|++|++++ |+.|++||+.+ +
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~----~~~~~----------~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~-~ 328 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGK----ASFLY----------SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ-W 328 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSS----SCCSB----------CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS-S
T ss_pred eEEEEecCcceeeEEeccccccc----ceEEE----------eeeccccccceeECCCCCeeEEEcCCCEEEEEECCC-C
Confidence 68999999999999999886532 11111 234688999999999999999986 69999999987 6
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc------------CCCcEEEEEeCCCCceeEEEeccC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFSHGVGSAGGITVEAGK 413 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~ 413 (487)
.....+..|....... .. .....|+|++.++++++ .++.|++||..+++.......+
T Consensus 329 ~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-- 397 (435)
T 4e54_B 329 DCPLGLIPHPHRHFQH------LT---PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-- 397 (435)
T ss_dssp SSEEEECCCCCCCCSS------SC---CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--
T ss_pred ccceEEeccccccccc------ce---eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--
Confidence 6666665554321100 00 12455666665555543 3457999998887432211112
Q ss_pred CccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEE-EEcCCCCEEEEecCCeEEEEeC
Q 011368 414 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL-AWHPTTNLIACANGNSLFFHYA 487 (487)
Q Consensus 414 ~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~-~~spd~~~la~~s~~~~~i~~~ 487 (487)
|...|.++ +|||||++||+|+++.++||+.
T Consensus 398 --------------------------------------------~~~~v~s~~~fspdg~~lasg~d~~i~iW~~ 428 (435)
T 4e54_B 398 --------------------------------------------ESSGISSLNEFNPMGDTLASAMGYHILIWSQ 428 (435)
T ss_dssp --------------------------------------------SCCCCCCEEEECTTSSCEEEECSSEEEECCC
T ss_pred --------------------------------------------CCCcEEEEEEECCCCCEEEEEcCCcEEEEEC
Confidence 22345555 6899999999888888888863
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-38 Score=294.29 Aligned_cols=322 Identities=13% Similarity=0.114 Sum_probs=256.1
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|.++|.+++|+|||++++++..++.+.+|..... .......+|.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~h~--------- 51 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH---------------------------ARQINTLNHG--------- 51 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE---------------------------EEEEEEECCS---------
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc---------------------------cccceeccCC---------
Confidence 4678999999999999998887776666543221 1123334687
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+.|.+++| ++++++|++++ |+.|++||+.++......
T Consensus 52 ---~~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~------------------------------------- 88 (337)
T 1gxr_A 52 ---EVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSPV------------------------------------- 88 (337)
T ss_dssp ---SCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSCS-------------------------------------
T ss_pred ---CceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceeee-------------------------------------
Confidence 89999999 57899999998 999999999876532110
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
......+|...|.+++|+|++++|+++ .|+.|++||++....... ..+..|...|.+++|+|++ ++|
T Consensus 89 -----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~------~~~~~~~~~i~~~~~~~~~-~~l 156 (337)
T 1gxr_A 89 -----SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK------AELTSSAPACYALAISPDS-KVC 156 (337)
T ss_dssp -----EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE------EEEECSSSCEEEEEECTTS-SEE
T ss_pred -----ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee------eecccCCCceEEEEECCCC-CEE
Confidence 000013789999999999999999999 999999999985542221 1346788899999999999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
++++.||.|++||+++++.. ..+.. |...+.+++|+|++++|++++ |+.|++||+++ ++.+
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~ 218 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLV----RQFQG-------------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQL 218 (337)
T ss_dssp EEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEE
T ss_pred EEEeCCCcEEEEeCCCCcee----eeeec-------------ccCceEEEEECCCCCEEEEEecCCcEEEEECCC-CceE
Confidence 99999999999999987644 44544 477899999999999999986 59999999987 6666
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 428 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 428 (487)
..+... .. +.+++|+|++++|++++.|+.|++||+.+++ ...+..|..++..+.++| +++
T Consensus 219 ~~~~~~-~~---------------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~ 278 (337)
T 1gxr_A 219 QQHDFT-SQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAY--CGK 278 (337)
T ss_dssp EEEECS-SC---------------EEEEEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECT--TSS
T ss_pred eeecCC-Cc---------------eEEEEECCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEEEECC--CCC
Confidence 665432 22 2589999999999999999999999998774 457889999999999998 666
Q ss_pred cccccceeeecccce-ecCCCCC-ccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 429 RSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 429 ~~~~~~l~~g~~~~~-~~w~~~~-~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
. +++++.++. ++|+... .......+...|.+++|+|++++|++++.|+ +++|+
T Consensus 279 ~-----l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 279 W-----FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp E-----EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred E-----EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 6 899999999 9995432 2223456889999999999999999988665 99996
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.5e-38 Score=319.22 Aligned_cols=309 Identities=14% Similarity=0.181 Sum_probs=235.8
Q ss_pred cccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...|.+.|++++|+|++ ++|++|+.|++|+||++.+.... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~----- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS----- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS-----
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC-----
Confidence 45799999999999875 79999999999999998765431 223456788999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|.+++| ++++++|++|+.|++|++||+.++.....
T Consensus 431 -------~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~---------------------------------- 467 (694)
T 3dm0_A 431 -------HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRR---------------------------------- 467 (694)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred -------CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeE----------------------------------
Confidence 89999999 68899999999999999999998765433
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+.+|...|.+++|+|++++|++| .|++|++||+. ......+ .....+|...|.+++|+|++
T Consensus 468 -------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~----~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 468 -------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTI----SEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp -------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE----CSSTTSCSSCEEEEEECSCS
T ss_pred -------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceee----ccCCCCCCCcEEEEEEeCCC
Confidence 37899999999999999999999 99999999987 3333322 12346788999999999985
Q ss_pred -CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 266 -CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 266 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
...|++++.|+.|++||+++++.. ..+.+ |...|.+++|+|++++|++|+ |+.|++||+++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~----~~~~~-------------h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLR----STLAG-------------HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CcceEEEEeCCCeEEEEECCCCcEE----EEEcC-------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 247999999999999999987643 44555 578999999999999999986 69999999987
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
++.+..+..+.. +.+++|+|++.+|++++ ++.|+|||+.++ .....+..+...........
T Consensus 593 -~~~~~~~~~~~~----------------v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 593 -GKKLYSLEANSV----------------IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp -TEEEECCBCSSC----------------EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECCCCC---------
T ss_pred -CceEEEecCCCc----------------EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcccccccccccccc
Confidence 777766654432 25899999998887765 456999999987 33444443322110000000
Q ss_pred CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368 424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~ 487 (487)
+ ......+.-.+++++|||||++|++|+.|+ ++||+.
T Consensus 654 ---~------------------------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 654 ---G------------------------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp ----------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ---c------------------------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 0 000011222578999999999999999665 889974
No 33
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-38 Score=326.55 Aligned_cols=385 Identities=11% Similarity=0.097 Sum_probs=264.9
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|++++|+| |++|++++.|++|+|||+.+++. +..+. |.
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~---------------------------~~~~~-~~------- 98 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV---------------------------LTTVF-VP------- 98 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE---------------------------EEEEE-CS-------
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE---------------------------EEEEc-CC-------
Confidence 35778999999999 88999999999999999987653 34443 54
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeee----------cCCCCceeeeeccccccccccccC
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE----------MDHFPFVSSENTLLAEKNFMNEHN 178 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 178 (487)
+.|++++| +|++++|++|+.||+|++||+.+++...... ......+.++.|.+.+...++.+.
T Consensus 99 -----~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 99 -----GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp -----SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred -----CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 77999999 6889999999999999999999877542211 223456788888886655555554
Q ss_pred CCCcceeeeeeeec--cceeeeec-----------------ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCce
Q 011368 179 PPSFAHGYHLEWTE--NMATKVYP-----------------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 238 (487)
Q Consensus 179 ~~~~~~~~~~~~~~--~~~~~~~~-----------------~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~ 238 (487)
.+.. . .|+. ..+.+.+. ..|...|++++|+|+|++|+++ .|+.|++||++++ ++
T Consensus 172 ~dg~----v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g-~~ 245 (902)
T 2oaj_A 172 EYVT----L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG-HM 245 (902)
T ss_dssp SSCE----E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC-CE
T ss_pred CCCc----E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cE
Confidence 4432 2 4443 23333331 2245789999999999999999 9999999999854 44
Q ss_pred eEEeecCCCCCC-----------CCCCcEEEEEEec----CCCCEEEEEeCC-----CeEEEEEccC-------------
Q 011368 239 FNIVDMKPSNMD-----------DLTEVITSAEFHP----IYCNLLAYSSSR-----GFVRLVDMRQ------------- 285 (487)
Q Consensus 239 ~~~~~~~~~~~~-----------~~~~~v~~v~~~p----~~~~~l~~~~~d-----g~i~iwd~~~------------- 285 (487)
+....+...... .|...|.+++|++ ++..++++|+.+ ..+.+|++..
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 332111000000 2355789999964 332466666554 2677777320
Q ss_pred --------Cccc-----------------------------------cccceeecccccc--------------------
Q 011368 286 --------SALC-----------------------------------DHSARILRDAAES-------------------- 302 (487)
Q Consensus 286 --------~~~~-----------------------------------~~~~~~~~~h~~~-------------------- 302 (487)
.+.. ...++.+......
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 0000 0001111100000
Q ss_pred -------------------cCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee--eeee--------
Q 011368 303 -------------------HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV--ATFK-------- 352 (487)
Q Consensus 303 -------------------~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~--~~~~-------- 352 (487)
......+.+|...+..++|+|++++|++|+ |++|++||+.. +... ..+.
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTT
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcC
Confidence 000112345555666677789999999986 69999999986 3321 1111
Q ss_pred -cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC----------------------------
Q 011368 353 -IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS---------------------------- 403 (487)
Q Consensus 353 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~---------------------------- 403 (487)
+|.. .|++++|+|||++||+|+.||+|+||++.+++
T Consensus 485 ~~h~~---------------~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 485 KAKEL---------------AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp CSSSC---------------CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred CCCCC---------------ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 2333 23699999999999999999999999998763
Q ss_pred ----------------ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccc-------ccc-cc
Q 011368 404 ----------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE-------LSY-NL 458 (487)
Q Consensus 404 ----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~-------~~~-~~ 458 (487)
.....+.+|.++|++++|+| ++ + |++|+.|+. ++|+...... ... +|
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp--dG-~-----lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN--IG-F-----VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB--TS-E-----EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cccccccCCCCCCCccceeEEEEcCCCcEEEEEecC--Cc-E-----EEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 12567889999999999998 66 7 999999999 9996543221 233 78
Q ss_pred CCCeEEEEEc-----CCC---CEEEEecCCe-EEEEe
Q 011368 459 SSKLLHLAWH-----PTT---NLIACANGNS-LFFHY 486 (487)
Q Consensus 459 ~~~v~~~~~s-----pd~---~~la~~s~~~-~~i~~ 486 (487)
...|++|+|+ ||| .+|++|+.|+ +++|.
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 8999999999 886 7999999665 99996
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-38 Score=288.93 Aligned_cols=297 Identities=13% Similarity=0.138 Sum_probs=220.8
Q ss_pred cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (487)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (487)
..+.+..+++|. +.|.+++|+ ++ +|++++.|++|++||+..+.....
T Consensus 3 ~~~~~~~~~~h~------------~~v~~~~~s--~~--~las~~~D~~i~lw~~~~~~~~~~----------------- 49 (330)
T 2hes_X 3 SINLIKSLKLYK------------EKIWSFDFS--QG--ILATGSTDRKIKLVSVKYDDFTLI----------------- 49 (330)
T ss_dssp CCEEEEEEECCS------------SCEEEEEEE--TT--EEEEEESSSCEEEEECSSSCCEEE-----------------
T ss_pred ccccceeeccCC------------CceeeeccC--CC--EEEEEcCCCEEEEEEecCCCeEEE-----------------
Confidence 345678899999 999999995 44 999999999999999987532211
Q ss_pred ccccccccCCCCcceeeeeeeeccceeeee-cccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc---eeEEeec
Q 011368 170 EKNFMNEHNPPSFAHGYHLEWTENMATKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ---CFNIVDM 244 (487)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~---~~~~~~~ 244 (487)
..+ ..+|...|++++|+|++++|++| .|++|++||+..... ....
T Consensus 50 ---------------------------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~--- 99 (330)
T 2hes_X 50 ---------------------------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDL--- 99 (330)
T ss_dssp ---------------------------EEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEE---
T ss_pred ---------------------------EEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccccee---
Confidence 011 13499999999999999999999 999999999863211 0111
Q ss_pred CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368 245 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 324 (487)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~ 324 (487)
...+.+|...|.+++|+|++ ++|++++.|+.|++||++...........+.. |...|.+++|+|+
T Consensus 100 -~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-------------h~~~v~~v~~~p~ 164 (330)
T 2hes_X 100 -LAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQE-------------HSQDVKHVIWHPS 164 (330)
T ss_dssp -EEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECC-------------CSSCEEEEEECSS
T ss_pred -EEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-------------CCCceEEEEECCC
Confidence 02357899999999999999 99999999999999999543211111233444 5789999999999
Q ss_pred CCEEEEEe-CCeEEEEeCCCC-CceeeeeecccccccccccccCCCCcceeeEEEEcCC--CCEEEEEcCCCcEEEEEeC
Q 011368 325 GQHLLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 325 ~~~l~s~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~sg~~dg~i~iwd~~ 400 (487)
+.+|++++ |+.|++||.... ..++..+.+|...+ ++++|+|+ +.+|++|+.|++|++||+.
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV---------------WSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE---------------EEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcE---------------EEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 99999986 699999998752 15677888888754 69999998 7789999999999999997
Q ss_pred CCC-------ceeEEEec-cCCccccceEeeCCccccccccceeeecccce-ecCCCCCc----cc-cccccCC-CeEEE
Q 011368 401 VGS-------AGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----HE-LSYNLSS-KLLHL 465 (487)
Q Consensus 401 ~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~----~~-~~~~~~~-~v~~~ 465 (487)
++. .....+.. |...|.++++++ ++ . +++++.|+. ++|+.... .. ....|.. .|..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~-~-----l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NG-L-----IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV 301 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEECT--TS-C-----EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred CCCccccceeEEeeecccccccceEEEEEcC--CC-E-----EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence 642 12334444 899999999985 23 4 899999999 99954321 11 2246776 89999
Q ss_pred EEcC--CCCEEEEecCCe-EEEEeC
Q 011368 466 AWHP--TTNLIACANGNS-LFFHYA 487 (487)
Q Consensus 466 ~~sp--d~~~la~~s~~~-~~i~~~ 487 (487)
+|+| ++++||+|+.|+ ++||+.
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC
T ss_pred EEecCCCceEEEEecCCCcEEEEEe
Confidence 9999 789999999665 899974
No 35
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-38 Score=327.50 Aligned_cols=395 Identities=14% Similarity=0.061 Sum_probs=257.5
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
.+|.+.|++++|+|++++||+|+.||+|+||+..+.+. ... ..|.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~---------------------------~~~-~~~~------- 58 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV---------------------------VIK-LEDR------- 58 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE---------------------------EEE-CSSC-------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE---------------------------EEE-cCCC-------
Confidence 45889999999999999999999999999999765432 222 2355
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++|+ + +++|++++.|++|++||+.+++...... ....+.++.+.+. +..++++..+....
T Consensus 59 -----~~V~~l~fs--p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~-g~~l~sgs~dg~V~---- 123 (902)
T 2oaj_A 59 -----SAIKEMRFV--K-GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDAS-LDWMLIGLQNGSMI---- 123 (902)
T ss_dssp -----CCEEEEEEE--T-TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTT-CSEEEEEETTSCEE----
T ss_pred -----CCEEEEEEc--C-CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCC-CCEEEEEcCCCcEE----
Confidence 789999996 5 6799999999999999999887665543 3456777777654 44444444443332
Q ss_pred eeeccceee------------eecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCC--------
Q 011368 189 EWTENMATK------------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP-------- 246 (487)
Q Consensus 189 ~~~~~~~~~------------~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-------- 246 (487)
.|+...... ..+.+|.+.|++++|+|+ +..+++| .|+.| +||+++ +.....+....
T Consensus 124 lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~ 201 (902)
T 2oaj_A 124 VYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGD 201 (902)
T ss_dssp EEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCST
T ss_pred EEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcc
Confidence 233222110 123679999999999996 5788888 99999 999994 44444432110
Q ss_pred ---CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc-cceeecccccccCccccccccccceeEEEEc
Q 011368 247 ---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 247 ---~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
.....|...|.+++|+|+| .+|++++.||.|++||+++++.+.. .......|............|...|.+++|+
T Consensus 202 ~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~ 280 (902)
T 2oaj_A 202 FSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWM 280 (902)
T ss_dssp TCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEE
T ss_pred cccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEE
Confidence 0123456789999999999 9999999999999999998764321 0000111110000000000123456666663
Q ss_pred ----CCC-CEEEEEe-C-----CeEEEEe---------------------------------------------------
Q 011368 323 ----NDG-QHLLSRD-Y-----MNLKLWD--------------------------------------------------- 340 (487)
Q Consensus 323 ----~~~-~~l~s~~-d-----~~i~iwd--------------------------------------------------- 340 (487)
|++ .+|++|+ + ..+++|+
T Consensus 281 ~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g 360 (902)
T 2oaj_A 281 CENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG 360 (902)
T ss_dssp ECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH
T ss_pred ecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC
Confidence 332 3344442 1 1455555
Q ss_pred --------------------CCCCCceeee-------eeccccccccc---------------------ccccCCCCcce
Q 011368 341 --------------------IRMDSTPVAT-------FKIHEHLRPKL---------------------CDLYNNDSIFD 372 (487)
Q Consensus 341 --------------------~~~~~~~~~~-------~~~~~~~~~~~---------------------~~~~~~~~~~~ 372 (487)
+.+ +..... +..|...+..+ ..+. +....
T Consensus 361 ~~d~~~l~~~s~dg~l~~~~~~~-g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~--G~~~~ 437 (902)
T 2oaj_A 361 CHNPGLILLILGNGEIETMLYPS-GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLK--GGVRT 437 (902)
T ss_dssp TBSCSEEEEEETTSCEEEEETTT-CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCC--CSBCC
T ss_pred CCCceeEEEEcCCCcEEEEECCC-CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCccc--CCcCC
Confidence 321 111000 00000000000 0000 00111
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce---eEEE--e-----ccCCccccceEeeCCccccccccceeeecccc
Q 011368 373 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITV--E-----AGKNENRKPILQAAPRARRSSLSNLTRGLYRQ 442 (487)
Q Consensus 373 ~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~---~~~~--~-----~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~ 442 (487)
+.+++|+|++++|++|+.|++|++||+.++... .... . +|...|.+++|+| +++. |++|+.|+
T Consensus 438 v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp--dg~~-----LAsgs~Dg 510 (902)
T 2oaj_A 438 KRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA--ETLE-----LAVSIETG 510 (902)
T ss_dssp CCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET--TTTE-----EEEEETTS
T ss_pred CCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC--CCCe-----EEEEecCc
Confidence 235677899999999999999999999987421 1121 1 7899999999999 7777 99999999
Q ss_pred e-ecCCCCCc-----------------------------------------------cccccccCCCeEEEEEcCCCCEE
Q 011368 443 A-HENSSSGH-----------------------------------------------HELSYNLSSKLLHLAWHPTTNLI 474 (487)
Q Consensus 443 ~-~~w~~~~~-----------------------------------------------~~~~~~~~~~v~~~~~spd~~~l 474 (487)
. ++|+.... ...+.+|.+.|++++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 9 99943211 23345689999999999999 99
Q ss_pred EEecCCe-EEEEeC
Q 011368 475 ACANGNS-LFFHYA 487 (487)
Q Consensus 475 a~~s~~~-~~i~~~ 487 (487)
|+|+.|+ ++||.+
T Consensus 590 Asgs~D~tv~lwd~ 603 (902)
T 2oaj_A 590 GIAYAAGSLMLIDR 603 (902)
T ss_dssp EEEETTSEEEEEET
T ss_pred EEEeCCCcEEEEEC
Confidence 9999776 899973
No 36
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=288.73 Aligned_cols=242 Identities=18% Similarity=0.274 Sum_probs=211.5
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|.+++|++++.++++|+.|++|++||+.+++. +..+..|.
T Consensus 77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~---------------------------~~~~~~~~------- 122 (321)
T 3ow8_A 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ---------------------------IKSIDAGP------- 122 (321)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCT-------
T ss_pred ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE---------------------------EEEEeCCC-------
Confidence 46899999999999999999999999999999887654 46677777
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..+.+++| +|++++|++++.|+.|++|++..++....
T Consensus 123 -----~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~------------------------------------ 159 (321)
T 3ow8_A 123 -----VDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYS------------------------------------ 159 (321)
T ss_dssp -----TCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEE------------------------------------
T ss_pred -----ccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEE------------------------------------
Confidence 77899999 68999999999999999999998765433
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+..|...|.+++|+|++++|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++ .
T Consensus 160 -----------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~-------~~~~h~~~v~~l~~spd~-~ 219 (321)
T 3ow8_A 160 -----------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLH-------TLEGHAMPIRSLTFSPDS-Q 219 (321)
T ss_dssp -----------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE-------EECCCSSCCCEEEECTTS-C
T ss_pred -----------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEE-------EEcccCCceeEEEEcCCC-C
Confidence 25678889999999999999999 999999999984 44443 356899999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
+|++++.|+.|++||+++++.. ..+.+ |...|.+++|+|++++|++++ |+.|++||+++ ++
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~----~~~~~-------------h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~-~~ 281 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLA----GTLSG-------------HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-RT 281 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TE
T ss_pred EEEEEcCCCeEEEEECCCccee----EEEcC-------------CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CE
Confidence 9999999999999999987643 45555 578999999999999999986 59999999987 88
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
++..+..|...+ ++++|+|++++|++++.||.|+|||..
T Consensus 282 ~~~~~~~h~~~v---------------~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 282 CVHTFFDHQDQV---------------WGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECCCSSCE---------------EEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEcCCCCcE---------------EEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 899998887754 699999999999999999999999963
No 37
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-37 Score=284.39 Aligned_cols=258 Identities=15% Similarity=0.219 Sum_probs=201.3
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|+|++||+|+.|++|+||++.+.. .+.+.++.+|.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~------- 53 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE------- 53 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCS-------
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEcccc-------
Confidence 3589999999999999999999999999999987542 12357889999
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
+.|.+++|++..++.+|++++.|++|++||+.+++....
T Consensus 54 -----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------ 92 (297)
T 2pm7_B 54 -----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI------------------------------------ 92 (297)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC------------------------------------
T ss_pred -----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE------------------------------------
Confidence 999999996433488999999999999999987642211
Q ss_pred eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
.. +.+|...|.+++|+|+ +.+|+++ .|+.|++||++....... ..+.+|...|.+++|+|++
T Consensus 93 --------~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~------~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 93 --------AV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP------IIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp --------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC------EEEECCSSCEEEEEECCCC
T ss_pred --------EE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee------eeeecccCccceEeecCCc
Confidence 01 2679999999999997 8899999 999999999985432211 1246899999999999972
Q ss_pred ------------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC---CEEEE
Q 011368 266 ------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLS 330 (487)
Q Consensus 266 ------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s 330 (487)
..+|++++.|+.|++||++++.........+. +|...|.+++|+|++ .+|++
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-------------~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------------GHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-------------CCSSCEEEEEECCCCSSSEEEEE
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-------------CCCCceEEEEECCCCCCceEEEE
Confidence 16999999999999999987652211123334 468899999999985 78998
Q ss_pred Ee-CCeEEEEeCCCCCce--eeee--ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 331 RD-YMNLKLWDIRMDSTP--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 331 ~~-d~~i~iwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
++ |++|++||++..... ...+ ..|... +++++|+|+|++|++++.||.|+||+....
T Consensus 225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred EECCCcEEEEEeCCCCCccceeeeecccCCCc---------------EEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 86 699999999752211 1222 223322 269999999999999999999999998743
No 38
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-38 Score=298.49 Aligned_cols=243 Identities=21% Similarity=0.336 Sum_probs=211.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|++++|+|++++|++|+.|++|+|||+.+++. +..+.+|.
T Consensus 146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~---------------------------~~~~~~h~------ 192 (410)
T 1vyh_C 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC---------------------------IRTMHGHD------ 192 (410)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE---------------------------EECCCCCS------
T ss_pred EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------------------eEEEcCCC------
Confidence 345899999999999999999999999999999876543 57788998
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| +|++.+|++++.|++|++||+.++.....
T Consensus 193 ------~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~~~~~----------------------------------- 229 (410)
T 1vyh_C 193 ------HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVKT----------------------------------- 229 (410)
T ss_dssp ------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEE-----------------------------------
T ss_pred ------CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------
Confidence 88999999 57899999999999999999998875443
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC--
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI-- 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-- 264 (487)
+.+|...|.++.++|++++|++| .|+.|++||+.+.. +.. .+.+|...|.+++|+|+
T Consensus 230 ------------~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~-------~~~~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 230 ------------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKA-------ELREHRHVVECISWAPESS 289 (410)
T ss_dssp ------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEE-------EECCCSSCEEEEEECCSCG
T ss_pred ------------EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eee-------EecCCCceEEEEEEcCccc
Confidence 37899999999999999999999 99999999998543 333 24689999999999996
Q ss_pred ------------------CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368 265 ------------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 326 (487)
Q Consensus 265 ------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~ 326 (487)
+ .+|++|+.|+.|++||++++... ..+.+ |...|.+++|+|+|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~~----~~~~~-------------h~~~v~~v~~~~~g~ 351 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCL----MTLVG-------------HDNWVRGVLFHSGGK 351 (410)
T ss_dssp GGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEEE----EEEEC-------------CSSCEEEEEECSSSS
T ss_pred ccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCceE----EEEEC-------------CCCcEEEEEEcCCCC
Confidence 4 68999999999999999988654 55555 478999999999999
Q ss_pred EEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 327 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 327 ~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+|++|+ |+.|++||+.+ ++++..+.+|...+ ++++|+|++.+|++|+.||+|++|+++
T Consensus 352 ~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 352 FILSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEEeCCCeEEEEECCC-CceEEEEcCCCCcE---------------EEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999986 59999999986 88888999888755 699999999999999999999999863
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.5e-37 Score=287.59 Aligned_cols=329 Identities=13% Similarity=0.129 Sum_probs=238.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|.++|++++|+|++++|++|+.|+.|++||+.+++ .+....+.+|.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~--------- 52 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN--------- 52 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS---------
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCC---------
Confidence 78899999999999999999999999999998763 22467788898
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..|.+++|+ +++++|++++.|+.|++||+.+++.....
T Consensus 53 ---~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------------------------------- 90 (372)
T 1k8k_C 53 ---GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTL------------------------------------- 90 (372)
T ss_dssp ---SCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEE-------------------------------------
T ss_pred ---CcccEEEEe--CCCCEEEEEcCCCeEEEEECCCCeeeeeE-------------------------------------
Confidence 899999995 68999999999999999999887643321
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
.+..|...|.+++|+|++++|+++ .|+.|++||++......... ....+|...|.+++|+|++ .+|
T Consensus 91 --------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~-~~l 157 (372)
T 1k8k_C 91 --------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKKPIRSTVLSLDWHPNS-VLL 157 (372)
T ss_dssp --------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECTTCCSCEEEEEECTTS-SEE
T ss_pred --------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----eeecccCCCeeEEEEcCCC-CEE
Confidence 126788999999999999999999 99999999999654321111 1135688999999999999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceeeccc-ccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
++++.||.|++||++............... .........+.+|...|.+++|+|++++|++++ |+.|++||+++ +++
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~ 236 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMA 236 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG-TTE
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC-Cce
Confidence 999999999999976432110000000000 000011112345688999999999999999986 59999999987 788
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC--CCce-eEEEeccCCccccceEeeC
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV--GSAG-GITVEAGKNENRKPILQAA 424 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~--~~~~-~~~~~~~~~~v~~~~~~~~ 424 (487)
+..+..|...+ .+++|+|++++|++| .|+.|++|++.+ +... ...+..+...
T Consensus 237 ~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~--------- 291 (372)
T 1k8k_C 237 VATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS--------- 291 (372)
T ss_dssp EEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------------
T ss_pred eEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc---------
Confidence 88888887644 699999999988887 899999999987 4211 1111111100
Q ss_pred Cccccccccceeeecccce-ecC---CCC-Ccc------ccc-cccCCCeEEEEEc-CCC---CEEEEecCCe-EEEEe
Q 011368 425 PRARRSSLSNLTRGLYRQA-HEN---SSS-GHH------ELS-YNLSSKLLHLAWH-PTT---NLIACANGNS-LFFHY 486 (487)
Q Consensus 425 ~~~~~~~~~~l~~g~~~~~-~~w---~~~-~~~------~~~-~~~~~~v~~~~~s-pd~---~~la~~s~~~-~~i~~ 486 (487)
....... .+| ... ... ... .+|...|++++|+ ++| ++|++++.|+ +++|+
T Consensus 292 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 292 ------------SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -----------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ------------hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 0000111 222 111 111 222 3899999999977 666 9999999665 88996
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=285.12 Aligned_cols=289 Identities=13% Similarity=0.149 Sum_probs=229.0
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
....|.+.|++++|+|++++|++|+.||.|+|||+.+++. ...+.+|.
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~h~----- 74 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---------------------------LGTLDGHT----- 74 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE---------------------------EEEECCCS-----
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---------------------------hhhhhhcC-----
Confidence 3566999999999999999999999999999999877654 57788998
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..|.+++| ++++++|++++.|+.|++||+.+++....
T Consensus 75 -------~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------------------- 111 (369)
T 3zwl_B 75 -------GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVAT---------------------------------- 111 (369)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEE----------------------------------
T ss_pred -------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------------------------
Confidence 89999999 57899999999999999999998875543
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC-----CeEEEEEccCCCceeEEeec---CCCCCCCCCC--c
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDM---KPSNMDDLTE--V 255 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~--~ 255 (487)
..+...|.+++|+|++++++++ .+ +.|++||+............ ....+..|.. .
T Consensus 112 --------------~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 112 --------------WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp --------------EECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred --------------eecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 2377889999999999999998 88 99999999865432211111 0112334555 8
Q ss_pred EEEEEEecCCCCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368 256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 333 (487)
Q Consensus 256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d 333 (487)
+.+++|+|++ .+|++++.||.|++||+++ .... ..+.. |...|.+++|+|++++|++++ |
T Consensus 178 ~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 178 ATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----DSIDL-------------HEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp EEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----EEEEC-------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----EEEec-------------CCCceeEEEECCCCCEEEEecCC
Confidence 9999999999 9999999999999999998 3322 44444 468899999999999999986 5
Q ss_pred CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC--------------cEEEEEe
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--------------LLRIFSH 399 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg--------------~i~iwd~ 399 (487)
+.|++||+++ +..+..+..... + ..++|+|+++++++++.++ .+++||+
T Consensus 240 ~~i~v~d~~~-~~~~~~~~~~~~-~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 240 TNSFLVDVST-LQVLKKYETDCP-L---------------NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp SEEEEEETTT-CCEEEEEECSSC-E---------------EEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred ceEEEEECCC-CceeeeecCCCC-c---------------eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 9999999987 777777763332 2 5899999999999999998 6777776
Q ss_pred CCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368 400 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 479 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~ 479 (487)
.+++. ...+ ..|...|.+++|+|++++|++++.
T Consensus 303 ~~~~~-~~~~----------------------------------------------~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 303 IFEEE-IGRV----------------------------------------------QGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp TTCCE-EEEE----------------------------------------------ECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCcc-hhhe----------------------------------------------ecccCcEEEEEECCCCCEEEEEcC
Confidence 65522 2222 234557788888888888888875
Q ss_pred Ce-EEEEe
Q 011368 480 NS-LFFHY 486 (487)
Q Consensus 480 ~~-~~i~~ 486 (487)
|+ +++|+
T Consensus 336 dg~v~iw~ 343 (369)
T 3zwl_B 336 DGFIRLHH 343 (369)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEE
Confidence 54 77775
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.8e-37 Score=285.61 Aligned_cols=244 Identities=23% Similarity=0.372 Sum_probs=207.9
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|...|.+++|+|++++|++|+.|+.|++|++.+.+. ..+....+.+|.
T Consensus 95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-----------------------~~~~~~~~~~h~-------- 143 (340)
T 1got_B 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------------------NVRVSRELAGHT-------- 143 (340)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-----------------------SCEEEEEEECCS--------
T ss_pred cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-----------------------cceeEEEecCCC--------
Confidence 4788899999999999999999999999999876542 334567788998
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+.|.+++|+ +++ .+++++.|++|++||+.+++....
T Consensus 144 ----~~v~~~~~~--~~~-~l~s~s~d~~i~~wd~~~~~~~~~------------------------------------- 179 (340)
T 1got_B 144 ----GYLSCCRFL--DDN-QIVTSSGDTTCALWDIETGQQTTT------------------------------------- 179 (340)
T ss_dssp ----SCEEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred ----ccEEEEEEC--CCC-cEEEEECCCcEEEEECCCCcEEEE-------------------------------------
Confidence 889999995 344 589999999999999998875443
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.+|...|.+++|+|+++++++| .|+.|++||+++. .+.. .+.+|...|.+++|+|++ .+
T Consensus 180 ----------~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~-------~~~~h~~~v~~v~~~p~~-~~ 240 (340)
T 1got_B 180 ----------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQ-------TFTGHESDINAICFFPNG-NA 240 (340)
T ss_dssp ----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEE-------EECCCSSCEEEEEECTTS-SE
T ss_pred ----------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEE-------EEcCCcCCEEEEEEcCCC-CE
Confidence 37899999999999999999999 9999999999854 3433 357899999999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
|++++.||.|++||+++++.. ..+.. ..+...|.+++|+|+|++|++|+ |+.|++||+.+ ...
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~----~~~~~-----------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~~~ 304 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK-ADR 304 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCE
T ss_pred EEEEcCCCcEEEEECCCCcEE----EEEcc-----------CCcccceEEEEECCCCCEEEEECCCCeEEEEEccc-CcE
Confidence 999999999999999987643 33322 12235799999999999999986 59999999987 788
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd 398 (487)
+..+.+|...+ ++++|+|+|++|++|+.||.|+|||
T Consensus 305 ~~~~~~h~~~v---------------~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 305 AGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eeEeecCCCcE---------------EEEEEcCCCCEEEEEcCCccEEecC
Confidence 88899998765 6999999999999999999999996
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-36 Score=287.16 Aligned_cols=301 Identities=16% Similarity=0.173 Sum_probs=227.2
Q ss_pred cccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...|.+.|++++|+|++ ++|++|+.||.|+|||+.+++.. ....+.+|.
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~----- 118 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG----- 118 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT-----
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC-----
Confidence 34688999999999999 99999999999999999876541 222334687
Q ss_pred ccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|.+++|+ | ++.+|++++.|+.|++||+.+........
T Consensus 119 -------~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------- 158 (383)
T 3ei3_B 119 -------DAITGMKFN--QFNTNQLFVSSIRGATTLRDFSGSVIQVFAK------------------------------- 158 (383)
T ss_dssp -------CBEEEEEEE--TTEEEEEEEEETTTEEEEEETTSCEEEEEEC-------------------------------
T ss_pred -------CceeEEEeC--CCCCCEEEEEeCCCEEEEEECCCCceEEEec-------------------------------
Confidence 899999995 5 67899999999999999998644332210
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
...|...|.+++|+|++++|+++ .|+.|++||++ +. ... .+.+|...|.+++|+|+
T Consensus 159 --------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~-------~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 159 --------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIF-------KEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp --------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEE-------EEECSSSCEEEEEECSS
T ss_pred --------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEE-------EeccCCCcEEEEEECCC
Confidence 14566889999999999999999 99999999995 33 333 24678999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-CCeEEEEeC
Q 011368 265 YCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDI 341 (487)
Q Consensus 265 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d~~i~iwd~ 341 (487)
+ . +|++++.|+.|++||+++.+........+ +|...|.+++|+| ++++|++++ |+.|++||+
T Consensus 216 ~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 216 C-DWLMATSSVDATVKLWDLRNIKDKNSYIAEM--------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp C-TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred C-CCEEEEEeCCCEEEEEeCCCCCcccceEEEe--------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence 9 6 99999999999999999843221111222 2478999999999 999999986 599999999
Q ss_pred CCCCceeeeeecccccccc-----cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 342 RMDSTPVATFKIHEHLRPK-----LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
++ ......+..|...... ...+.... .+..++|+|++++ +|+.||.|++||+.+++. ...+.+|.
T Consensus 281 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~-~~~l~~~~--- 350 (383)
T 3ei3_B 281 YD-WSKPDQIIIHPHRQFQHLTPIKATWHPMY---DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL-VHQLRDPN--- 350 (383)
T ss_dssp TB-TTSCSEEEECCBCCCTTSCCCCCEECSSS---SEEEEECBCCTTT--CTTCCCCEEEEETTTCCE-EEEECBTT---
T ss_pred CC-CccccccccccccccccccceEEeccCCC---CceEEEecCCccc--ccCCCCeEEEEecCCCce-eeeecCCC---
Confidence 87 6666666655432110 00000011 1236788888887 888999999999988743 33333221
Q ss_pred ccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368 417 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 487 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~~ 487 (487)
+...+..++|+|++++||+++++.++||+.
T Consensus 351 -----------------------------------------~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 351 -----------------------------------------AAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp -----------------------------------------BCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred -----------------------------------------CCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 223556779999999999999778999974
No 43
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-36 Score=280.13 Aligned_cols=250 Identities=18% Similarity=0.243 Sum_probs=204.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|++++|+|++++|++|+.|++|+|||+.+++. ...+.+|.
T Consensus 62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~---------------------------~~~~~~h~------- 107 (319)
T 3frx_A 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET---------------------------YQRFVGHK------- 107 (319)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe---------------------------eEEEccCC-------
Confidence 46899999999999999999999999999999987754 57788998
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++| ++++.+|++++.|++|++||+.......
T Consensus 108 -----~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~~~~~~------------------------------------- 143 (319)
T 3frx_A 108 -----SDVMSVDI--DKKASMIISGSRDKTIKVWTIKGQCLAT------------------------------------- 143 (319)
T ss_dssp -----SCEEEEEE--CTTSCEEEEEETTSCEEEEETTSCEEEE-------------------------------------
T ss_pred -----CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeEEE-------------------------------------
Confidence 89999999 5789999999999999999997543322
Q ss_pred eeeccceeeeecccCCCceeEEEeCCC------CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
+.+|...|.+++|.|+ +..|+++ .|+.|++||++.. .... .+.+|...|.+++|
T Consensus 144 -----------~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~-------~~~~h~~~v~~~~~ 204 (319)
T 3frx_A 144 -----------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEA-------DFIGHNSNINTLTA 204 (319)
T ss_dssp -----------ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEE-------EECCCCSCEEEEEE
T ss_pred -----------EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhhe-------eecCCCCcEEEEEE
Confidence 2689999999999985 4488998 9999999999843 3332 35689999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeC
Q 011368 262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 341 (487)
Q Consensus 262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~ 341 (487)
+|++ .+|++++.||.|++||+++++.. ..+.. ...|.+++|+|++.+|+++.++.+++|++
T Consensus 205 sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~la~~~~~~i~v~~~ 265 (319)
T 3frx_A 205 SPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSA--------------QDEVFSLAFSPNRYWLAAATATGIKVFSL 265 (319)
T ss_dssp CTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------CSCEEEEEECSSSSEEEEEETTEEEEEEE
T ss_pred cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC--------------CCcEEEEEEcCCCCEEEEEcCCCcEEEEe
Confidence 9999 99999999999999999987654 44444 35799999999999999998888999999
Q ss_pred CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.. ...+..+..+...... . ....+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 266 ~~-~~~~~~~~~~~~~~~~----~---~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 266 DP-QYLVDDLRPEFAGYSK----A---AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TT-EEEEEEECCCCTTCCG----G---GCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred Cc-CeeeeccCcccccccc----C---cCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 75 5555555432211000 0 0012358999999999999999999999999764
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.2e-37 Score=287.60 Aligned_cols=252 Identities=18% Similarity=0.242 Sum_probs=196.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...|++++|+|++++| +++.||+|+|||+.+++.. ........+|.
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~------ 139 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD------ 139 (357)
T ss_dssp EEECSSCEEEEEEETTTEEE-EEETTSCEEEC-------------------------------CCCCEEECCCS------
T ss_pred cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeecccccee-----------------------EEEeeccCCCC------
Confidence 35688899999999998655 5678999999999877542 11123455787
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| +|++++|++++.|++|++||+.+++....
T Consensus 140 ------~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~~~----------------------------------- 176 (357)
T 4g56_B 140 ------DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVLKS----------------------------------- 176 (357)
T ss_dssp ------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEEEE-----------------------------------
T ss_pred ------CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------
Confidence 89999999 67899999999999999999998875543
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+.+|...|++++|+|++. +++++ .|+.|++||++++..... .....+...+.+++|+|++
T Consensus 177 ------------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~------~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 177 ------------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR------IDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp ------------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB------CCCTTCCSCEEEEEECTTS
T ss_pred ------------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee------eeeccccccccchhhhhcc
Confidence 378999999999999875 67787 999999999985543221 2345677889999999986
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEe-CCeEEEEeCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~iwd~~~ 343 (487)
..+|++|+.|+.|++||+++++.. +.+.. |...|++++|+|++ ++|++|+ |++|+|||+++
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~~----~~~~~-------------~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDSA----QTSAV-------------HSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGGC----EEECC-------------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred cceEEEeecccceeEEECCCCcEe----EEEec-------------cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 578999999999999999987654 55555 47899999999987 5788876 69999999986
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
++.+..+ +|...+ ++++|+| |+++|++|+.||+|++|++.+...
T Consensus 302 -~~~~~~~-~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 302 -SEVFRDL-SHRDFV---------------TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp -CEEEEEC-CCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred -CcEeEEC-CCCCCE---------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 6665544 676644 6999998 899999999999999999976533
No 45
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.4e-37 Score=284.44 Aligned_cols=258 Identities=15% Similarity=0.204 Sum_probs=199.6
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|+|++||+|+.|++|+|||+.+++. ..+..+.+|.
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~------- 57 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE------- 57 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence 35899999999999999999999999999999987632 2357789999
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
+.|.+++|+|..++.+|++++.|++|++||+.+++....
T Consensus 58 -----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------ 96 (316)
T 3bg1_A 58 -----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS------------------------------------ 96 (316)
T ss_dssp -----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE------------------------------------
T ss_pred -----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE------------------------------------
Confidence 899999996423578999999999999999987642221
Q ss_pred eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
.. +.+|...|++++|+|+ +.+|++| .|+.|++||++..... .. ...+.+|...|.+++|+|+.
T Consensus 97 --------~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-~~----~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 97 --------HE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-EV----KKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp --------EE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-EE----CCBTTSSSSCBCCCEECCCC
T ss_pred --------EE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-ce----eeeeccccCCcceEEEcccc
Confidence 11 3689999999999997 7899999 9999999999854322 11 12457889999999999972
Q ss_pred ----------------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC----
Q 011368 266 ----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---- 325 (487)
Q Consensus 266 ----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---- 325 (487)
..+|++++.|+.|++||++..... .....+ .+|...|.+++|+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~l-------------~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQKL-------------EAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEECC-------------BCCSSCEEEEECCCCSSCSC
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceeeec-------------ccCCCceEEEEecCCCCCCC
Confidence 168999999999999999754211 011233 3468899999999986
Q ss_pred CEEEEEe-CCeEEEEeCCCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 326 QHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 326 ~~l~s~~-d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
.+|++++ |++|++|++.... .....+..|...+ ++++|+|++++|++++.|+.|+||+...
T Consensus 229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 7899886 6999999987521 1223344454432 6999999999999999999999999874
Q ss_pred C
Q 011368 402 G 402 (487)
Q Consensus 402 ~ 402 (487)
.
T Consensus 294 ~ 294 (316)
T 3bg1_A 294 D 294 (316)
T ss_dssp T
T ss_pred C
Confidence 3
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.3e-37 Score=331.88 Aligned_cols=368 Identities=15% Similarity=0.201 Sum_probs=278.5
Q ss_pred ccccCcEEEEEEcC--CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 29 LQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 29 ~~h~~~V~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
..|...|.+++|+| ++.++++|+.||.|++||+.+++. ...+.+|.
T Consensus 696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---------------------------~~~~~~h~----- 743 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---------------------------RNTMFGHT----- 743 (1249)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE---------------------------EEEECCCS-----
T ss_pred cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch---------------------------hheecCCC-----
Confidence 35889999999999 556899999999999999887754 57788998
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCC------------CCceeeeecccccccc-
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH------------FPFVSSENTLLAEKNF- 173 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~- 173 (487)
+.|.+++| +|++.+|++++.|+.|++||+.+++......... ...+.++.+.+....+
T Consensus 744 -------~~v~~~~~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 744 -------NSVNHCRF--SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp -------SCEEEEEE--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred -------CCEEEEEE--ecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 89999999 5789999999999999999998876544322110 1122233332222111
Q ss_pred ----------------------------------------ccccCCCCcceeeeeeeecc--ceeeeecccCCCceeEEE
Q 011368 174 ----------------------------------------MNEHNPPSFAHGYHLEWTEN--MATKVYPHAHDFNINSIS 211 (487)
Q Consensus 174 ----------------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~i~ 211 (487)
++.+..... ...|+.. ..... +.+|...|.+++
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~----v~vwd~~~~~~~~~-~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC----VELWNIDSRLKVAD-CRGHLSWVHGVM 889 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC----EEEEETTTTEEEEE-ECCCSSCEEEEE
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe----EEEEEcCCCceeee-cCCCccceEEEE
Confidence 111111111 1124432 23333 378999999999
Q ss_pred eCCCCCEEEEe-cCCeEEEEEccCCC------------------------------------------------------
Q 011368 212 NNSDCETFVSA-DDLRINLWNLEISD------------------------------------------------------ 236 (487)
Q Consensus 212 ~s~~~~~l~s~-~d~~i~iwd~~~~~------------------------------------------------------ 236 (487)
|+|+++.|+++ .|+.|++|++....
T Consensus 890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 969 (1249)
T 3sfz_A 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence 99999999999 99999999965210
Q ss_pred -------------ceeEEeecCC----CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccc
Q 011368 237 -------------QCFNIVDMKP----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 299 (487)
Q Consensus 237 -------------~~~~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h 299 (487)
..+.+++... ..+.+|...|.+++|+|++ ++|++++.||.|++||+.+++.. ...
T Consensus 970 sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~-----~~~-- 1041 (1249)
T 3sfz_A 970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV-----FLQ-- 1041 (1249)
T ss_dssp CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE-----CCB--
T ss_pred cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE-----EEe--
Confidence 0011111111 1345788899999999999 99999999999999999987643 122
Q ss_pred ccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc
Q 011368 300 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 379 (487)
Q Consensus 300 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 379 (487)
.|...|.++.|+|++.+++.+.|+.|++||+.+ ++.+..+.+|...+ ++++|+
T Consensus 1042 -----------~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~s 1094 (1249)
T 3sfz_A 1042 -----------AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRIERDFTCHQGTV---------------LSCAIS 1094 (1249)
T ss_dssp -----------CCSSCEEEEEECSSSEEEEEESSSEEEEEETTT-TCCCEEEECCSSCC---------------CCEEEC
T ss_pred -----------cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC-CceeEEEcccCCcE---------------EEEEEC
Confidence 347899999999988766556679999999987 88888888888754 589999
Q ss_pred CCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC--CCccccc-
Q 011368 380 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS- 455 (487)
Q Consensus 380 ~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~- 455 (487)
|++++|++++.||.|++||+.+++ ....+.+|...+.+++|+| ++++ +++|+.|+. ++|+. ++.....
T Consensus 1095 ~d~~~l~s~s~d~~v~iwd~~~~~-~~~~l~~h~~~v~~~~~s~--dg~~-----lat~~~dg~i~vwd~~~~~~~~~~~ 1166 (1249)
T 3sfz_A 1095 SDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVRCSAFSL--DGIL-----LATGDDNGEIRIWNVSDGQLLHSCA 1166 (1249)
T ss_dssp SSSSSCEEECCSSCCCEECSSSSS-CSBCCCCCSSCEEEEEECS--SSSE-----EEEEETTSCCCEEESSSSCCCCCCC
T ss_pred CCCCEEEEEcCCCcEEEEECCCcc-eeeeeccCCCcEEEEEECC--CCCE-----EEEEeCCCEEEEEECCCCceEEEec
Confidence 999999999999999999999874 5778889999999999998 6777 999999999 99943 3333332
Q ss_pred --------cccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 456 --------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 456 --------~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
..|...|++++|+||+++|++++ +.+++|+
T Consensus 1167 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd 1204 (1249)
T 3sfz_A 1167 PISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWN 1204 (1249)
T ss_dssp CCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBC
T ss_pred cccccccccccCceEEEEEECCCCCEEEECC-CeEEEEE
Confidence 46888999999999999999887 6799996
No 47
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7e-36 Score=280.90 Aligned_cols=304 Identities=13% Similarity=0.187 Sum_probs=225.8
Q ss_pred cccCcEEEEEEcCC----CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec--CCCcc
Q 011368 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPE 103 (487)
Q Consensus 30 ~h~~~V~~~~~s~~----~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~ 103 (487)
.|.++|++++|+|+ ...+++++.++.|++|++.+++.. +.+..+. .|.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~------------------------~~~~~~~~~~~~-- 69 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI------------------------RLLQSYVDADAD-- 69 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE------------------------EEEEEEECSCTT--
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE------------------------EeeeeccccCCC--
Confidence 48999999999984 456666777789999999876531 1111111 244
Q ss_pred cccccccccccceeEEEEEecCC--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 104 FDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 104 ~~~~~~~~~~~~I~~v~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
..|.+++|+|..+ +.+|++++.|+.|++||+.+++....
T Consensus 70 ----------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~----------------------------- 110 (366)
T 3k26_A 70 ----------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH----------------------------- 110 (366)
T ss_dssp ----------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE-----------------------------
T ss_pred ----------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee-----------------------------
Confidence 7899999976433 67999999999999999998765543
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 259 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 259 (487)
+.+|...|.+++|+| ++++|+++ .|+.|++||++++ .....+ ..+.+|...|.++
T Consensus 111 ------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~----~~~~~~~~~v~~~ 167 (366)
T 3k26_A 111 ------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIF----GGVEGHRDEVLSA 167 (366)
T ss_dssp ------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-EEEEEE----CSTTSCSSCEEEE
T ss_pred ------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-eEEEEe----cccccccCceeEE
Confidence 368999999999999 89999999 9999999999854 444332 2236799999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccc----cc-----------ccCccccccccccceeEEEEcCC
Q 011368 260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA----AE-----------SHGSKSFFTEIIASISDIKFAND 324 (487)
Q Consensus 260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h----~~-----------~~~~~~~~~~~~~~v~~v~~s~~ 324 (487)
+|+|++ .+|++++.||.|++||+++++.. ..+..+ .. ..........|...|.+++|+
T Consensus 168 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 168 DYDLLG-EKIMSCGMDHSLKLWRINSKRMM----NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp EECTTS-SEEEEEETTSCEEEEESCSHHHH----HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred EECCCC-CEEEEecCCCCEEEEECCCCccc----cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 999999 99999999999999999987543 111110 00 000011123478999999999
Q ss_pred CCEEEEEe-CCeEEEEeCCCCCc-------------eeeeeecccccccccccccCCCCcceeeEEEEcCC--CCEEEEE
Q 011368 325 GQHLLSRD-YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATG 388 (487)
Q Consensus 325 ~~~l~s~~-d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~sg 388 (487)
+++|++++ |+.|++||+++... .+..+..|...+ ++++|+|+ +++|++|
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSMDFWQKMLALG 305 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEECTTSSEEEEE
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcCCCCCcEEEEE
Confidence 67888885 69999999986322 244455554433 58899999 9999999
Q ss_pred cCCCcEEEEEeCCCCcee---EEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEE
Q 011368 389 SYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL 465 (487)
Q Consensus 389 ~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~ 465 (487)
+.||.|++||+.+++... ..+.+ ..+...|.++
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~v~~~ 341 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTH--------------------------------------------HKCGAAIRQT 341 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECC--------------------------------------------TTCCSCEEEE
T ss_pred ecCCcEEEEECCCCCCccccceEEcc--------------------------------------------cccCCceEEE
Confidence 999999999998874311 01111 1225689999
Q ss_pred EEcCCCCEEEEecCC-eEEEEeC
Q 011368 466 AWHPTTNLIACANGN-SLFFHYA 487 (487)
Q Consensus 466 ~~spd~~~la~~s~~-~~~i~~~ 487 (487)
+|+|++++|++++.| .+++|+.
T Consensus 342 ~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 342 SFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC
T ss_pred EeCCCCCeEEEEeCCCEEEEEEe
Confidence 999999999999866 4899974
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.8e-36 Score=284.87 Aligned_cols=317 Identities=10% Similarity=0.102 Sum_probs=232.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+| ++|++|+.||.|+||++.+++.. ...+....+.+|.
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~------- 62 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK------- 62 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT-------
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC-------
Confidence 35899999999999 79999999999999999877521 1233457778898
Q ss_pred ccccccceeEEEEEec--CCC---cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 109 SLEIEEKINRVRWCAA--PNG---SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~--~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|.+++|+|. .++ .+|++++.|+.|++||+.+++....
T Consensus 63 -----~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~------------------------------- 106 (397)
T 1sq9_A 63 -----SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK------------------------------- 106 (397)
T ss_dssp -----TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC-------------------------------
T ss_pred -----CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc-------------------------------
Confidence 89999999642 127 8999999999999999988763000
Q ss_pred eeeeeeeeccceeeeecccC-----CCceeEEEeC----CCCCE-EEEe-cCCeEEEEEccC------CCcee----EEe
Q 011368 184 HGYHLEWTENMATKVYPHAH-----DFNINSISNN----SDCET-FVSA-DDLRINLWNLEI------SDQCF----NIV 242 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~s----~~~~~-l~s~-~d~~i~iwd~~~------~~~~~----~~~ 242 (487)
..... +..| ...|.+++|+ |+++. |+++ .|+.|++||+.. ..... ..+
T Consensus 107 ----------~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (397)
T 1sq9_A 107 ----------VIFEK-LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 175 (397)
T ss_dssp ----------EEEEE-ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred ----------cccee-ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence 00001 2556 5899999999 99999 9999 999999999985 33221 011
Q ss_pred ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc---ccceeEE
Q 011368 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI---IASISDI 319 (487)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~---~~~v~~v 319 (487)
.........|...|.+++|+|++ +|++++.||.|++||+++++.. ..+.. ..+| ...|.++
T Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~----~~~~~----------~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 176 QGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES----------QHSMINNSNSIRSV 239 (397)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC----------CC---CCCCCEEEE
T ss_pred eeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCcee----EEEec----------cccccccCCccceE
Confidence 00000114578889999999997 9999999999999999987643 33333 0124 6789999
Q ss_pred EEcCCCCEEEEE-eC---CeEEEEeCCCCCceeeeeec-------------ccccccccccccCCCCcceeeEEEEcCCC
Q 011368 320 KFANDGQHLLSR-DY---MNLKLWDIRMDSTPVATFKI-------------HEHLRPKLCDLYNNDSIFDKFECSVSGDG 382 (487)
Q Consensus 320 ~~s~~~~~l~s~-~d---~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 382 (487)
+|+|++++|+++ .| +.|++||+++ ++.+..+.. |...+ ++++|+|++
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~ 303 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV---------------MSLSFNDSG 303 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE---------------EEEEECSSS
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE---------------EEEEECCCC
Confidence 999999999987 46 8999999987 788888877 55543 699999999
Q ss_pred CEEEEEcCCCcEEEEEeCCCCceeEEEe------ccCCccccceEeeCCccccccccceeeecccceecCCCCCcccccc
Q 011368 383 LHFATGSYSNLLRIFSHGVGSAGGITVE------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY 456 (487)
Q Consensus 383 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~ 456 (487)
++|++++.||.|++||+.++ .....+. +|... ...+ ......
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~--------~~~g-----------------------~~~~~~ 351 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEED--------ILAV-----------------------DEHGDS 351 (397)
T ss_dssp SEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGG--------CCCB-----------------------CTTSCB
T ss_pred CEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhh--------hhcc-----------------------cccccc
Confidence 99999999999999999887 3455555 33110 0000 000112
Q ss_pred ccCCCeEEEEEcCCC----------CEEEEecCC-eEEEEe
Q 011368 457 NLSSKLLHLAWHPTT----------NLIACANGN-SLFFHY 486 (487)
Q Consensus 457 ~~~~~v~~~~~spd~----------~~la~~s~~-~~~i~~ 486 (487)
.|...|.+++|+|++ ++|++++.| .+++|+
T Consensus 352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 357799999999998 789988855 588986
No 49
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-35 Score=286.38 Aligned_cols=307 Identities=13% Similarity=0.210 Sum_probs=249.6
Q ss_pred cccccCcE-EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V-~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...|.+.| +|++ ++|++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 114 l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~---------------------------~~~~~~h~----- 159 (445)
T 2ovr_B 114 LKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKC---------------------------LRTLVGHT----- 159 (445)
T ss_dssp EECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCE---------------------------EEECCCCS-----
T ss_pred ecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcE---------------------------EEEEcCCC-----
Confidence 44687764 5554 5689999999999999999887654 57788998
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
+.|.+++|+ +.++++++.|++|++||+.+++....
T Consensus 160 -------~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------- 194 (445)
T 2ovr_B 160 -------GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHT---------------------------------- 194 (445)
T ss_dssp -------SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEE----------------------------------
T ss_pred -------CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEE----------------------------------
Confidence 899999994 56999999999999999998865543
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
+.+|...|.+++|+ ++.+++| .|+.|++||+.++. .... +.+|...|.+++| ++
T Consensus 195 -------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~-------~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 195 -------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHV-------LMGHVAAVRCVQY--DG 249 (445)
T ss_dssp -------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEE-------EECCSSCEEEEEE--CS
T ss_pred -------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEE-------EcCCcccEEEEEE--CC
Confidence 37899999999995 5788898 99999999999544 4332 4678999999999 56
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~ 344 (487)
.++++++.||.|++||+++++.. ..+.. |...|.++.| ++.++++++ |+.|++||+++
T Consensus 250 -~~l~~~~~dg~i~iwd~~~~~~~----~~~~~-------------~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~- 308 (445)
T 2ovr_B 250 -RRVVSGAYDFMVKVWDPETETCL----HTLQG-------------HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET- 308 (445)
T ss_dssp -SCEEEEETTSCEEEEEGGGTEEE----EEECC-------------CSSCEEEEEE--CSSEEEEEETTSCEEEEETTT-
T ss_pred -CEEEEEcCCCEEEEEECCCCcEe----EEecC-------------CCCceEEEEE--CCCEEEEEeCCCeEEEEECCC-
Confidence 88999999999999999987654 45555 4778999999 788999886 69999999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec---cCCccccceE
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---GKNENRKPIL 421 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~ 421 (487)
++.+..+..|...+ .++.+ ++++|++|+.||.|++||+.++ .....+.. |..++.++.+
T Consensus 309 ~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~ 370 (445)
T 2ovr_B 309 GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQF 370 (445)
T ss_dssp CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEE
T ss_pred CCEEEEEcCCcccE---------------EEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccCCCCCCCEEEEEE
Confidence 88888888887643 34444 6779999999999999999887 44667776 7888888888
Q ss_pred eeCCccccccccceeeecccce-ecCCC--CCccccc-----cccCCCeEEEEEcCCCCEEEEecCCe-----EEEEe
Q 011368 422 QAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS-----LFFHY 486 (487)
Q Consensus 422 ~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~-----~~~~~~v~~~~~spd~~~la~~s~~~-----~~i~~ 486 (487)
.+ .+ +++|+.|+. ++|+. ++..... ..+...|.+++|+|++.+||+|+.|+ +++|+
T Consensus 371 ~~----~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 371 NK----NF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp CS----SE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred CC----CE-----EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence 53 44 899999999 99943 4444433 36788999999999999999999777 77875
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-36 Score=285.24 Aligned_cols=258 Identities=16% Similarity=0.248 Sum_probs=203.6
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
..|++++|+|+|++||+|+.|+.|+|||+.+++. ...+.+|.
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~---------------------------~~~~~~h~----------- 165 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI---------------------------VMILQGHE----------- 165 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-----------
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------------------------EEEEccCC-----------
Confidence 3599999999999999999999999999876643 57789998
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..|.+++| +|++.+|++++.|++|++||+.+++....
T Consensus 166 -~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~---------------------------------------- 202 (393)
T 1erj_A 166 -QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLT---------------------------------------- 202 (393)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------------
T ss_pred -CCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEEE----------------------------------------
Confidence 88999999 57899999999999999999998765433
Q ss_pred cceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
..+...+.+++|+| ++++|++| .|+.|++||++++ .....+........+|...|.+++|+|++ .+|+
T Consensus 203 --------~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~ 272 (393)
T 1erj_A 203 --------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDG-QSVV 272 (393)
T ss_dssp --------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTS-SEEE
T ss_pred --------EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCC-CEEE
Confidence 24566799999999 89999999 9999999999854 44443322222346799999999999999 9999
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~ 349 (487)
+++.|+.|++||+++..... .... .........+.+|...|.+++|+|++++|++|+ |+.|++||+++ ++++.
T Consensus 273 s~s~d~~v~~wd~~~~~~~~----~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~-~~~~~ 346 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKS----DSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLL 346 (393)
T ss_dssp EEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-CCEEE
T ss_pred EEeCCCEEEEEECCCCCCcc----cccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEE
Confidence 99999999999998754221 0000 000111123456788999999999999999986 59999999987 88889
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcC------CCCEEEEEcCCCcEEEEEeCCC
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+.+|...+ .+++|++ ++++|++|+.||+|+||++...
T Consensus 347 ~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 347 MLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999998754 5888876 6889999999999999998743
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-35 Score=275.10 Aligned_cols=285 Identities=13% Similarity=0.162 Sum_probs=230.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|++++|+|++++|++++ ||.|++|++.+++.. .........+|.
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~~------ 97 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD------ 97 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT------
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce----------------------eeeecccccCCC------
Confidence 456899999999999999999998 999999999876532 111112223666
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| +|++++|++++.|+.|++||+.+++.....
T Consensus 98 ------~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---------------------------------- 135 (337)
T 1gxr_A 98 ------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKA---------------------------------- 135 (337)
T ss_dssp ------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEE----------------------------------
T ss_pred ------CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceee----------------------------------
Confidence 88999999 578999999999999999999887532211
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
.+..|...|.+++|+|++++++++ .|+.|++||+++. ..... +..|...|.+++|+|++
T Consensus 136 -----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~-------~~~~~~~i~~~~~~~~~- 195 (337)
T 1gxr_A 136 -----------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQ-------FQGHTDGASCIDISNDG- 195 (337)
T ss_dssp -----------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEE-------ECCCSSCEEEEEECTTS-
T ss_pred -----------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeee-------eecccCceEEEEECCCC-
Confidence 136788999999999999999999 9999999999844 34332 46788999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.+|++++.||.|++||+++++.. ..+.. ...+.+++|+|++++|++++ ++.|++||++. .
T Consensus 196 ~~l~~~~~dg~i~~~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~-~ 256 (337)
T 1gxr_A 196 TKLWTGGLDNTVRSWDLREGRQL----QQHDF--------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-P 256 (337)
T ss_dssp SEEEEEETTSEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTS-S
T ss_pred CEEEEEecCCcEEEEECCCCceE----eeecC--------------CCceEEEEECCCCCEEEEEcCCCcEEEEECCC-C
Confidence 99999999999999999987643 33322 56899999999999999986 59999999986 4
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 425 (487)
. ...+..|...+ .+++|+|++++|++++.||.|++||+.+++.. ....|...+..+.++|
T Consensus 257 ~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~-- 316 (337)
T 1gxr_A 257 D-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISV-- 316 (337)
T ss_dssp C-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSSCEEEEEECT--
T ss_pred C-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EEecCCCcEEEEEECC--
Confidence 3 34555565543 69999999999999999999999999987543 4456888899999998
Q ss_pred ccccccccceeeecccce-ecCC
Q 011368 426 RARRSSLSNLTRGLYRQA-HENS 447 (487)
Q Consensus 426 ~~~~~~~~~l~~g~~~~~-~~w~ 447 (487)
+++. +++++.|+. ++|+
T Consensus 317 ~~~~-----l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 317 DDKY-----IVTGSGDKKATVYE 334 (337)
T ss_dssp TSCE-----EEEEETTSCEEEEE
T ss_pred CCCE-----EEEecCCCeEEEEE
Confidence 5666 899999998 8884
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=279.33 Aligned_cols=269 Identities=16% Similarity=0.198 Sum_probs=202.8
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|+|++||+|+.|++|+||+..++. .+....+.+|.
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-------------------------~~~~~~~~~h~------- 105 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-------------------------FECVTTLEGHE------- 105 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------------------------EEEEEEECCCS-------
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------------------------eEEEEEccCCC-------
Confidence 3589999999999999999999999999999987652 34567889999
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++| +|++++|++++.|++|++||+..+.....
T Consensus 106 -----~~v~~v~~--sp~~~~l~s~s~D~~v~iwd~~~~~~~~~------------------------------------ 142 (345)
T 3fm0_A 106 -----NEVKSVAW--APSGNLLATCSRDKSVWVWEVDEEDEYEC------------------------------------ 142 (345)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECTTSCEEE------------------------------------
T ss_pred -----CCceEEEE--eCCCCEEEEEECCCeEEEEECCCCCCeEE------------------------------------
Confidence 89999999 57899999999999999999987542211
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
... +.+|...|.+++|+|++++|+++ .|+.|++||.+.... ... ..+.+|...|.+++|+|++ +
T Consensus 143 -------~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~-~~~-----~~~~~h~~~v~~l~~sp~g-~ 207 (345)
T 3fm0_A 143 -------VSV-LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW-VCC-----ATLEGHESTVWSLAFDPSG-Q 207 (345)
T ss_dssp -------EEE-ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE-EEE-----EEECCCSSCEEEEEECTTS-S
T ss_pred -------EEE-ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE-EEE-----EEecCCCCceEEEEECCCC-C
Confidence 111 37899999999999999999999 999999999984432 111 2357899999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccc-ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
+|++++.|+.|++||.......... ..... .........+. .|...|.+++|+|++..|++++ |+.|++|+.....
T Consensus 208 ~l~s~s~D~~v~iW~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 208 RLASCSDDRTVRIWRQYLPGNEQGV-ACSGS-DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEEETTSCEEEEEEECTTCTTCC-CCC----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EEEEEeCCCeEEEeccccCCCCccc-eeecc-CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 9999999999999997543211000 00000 00000001112 2678999999999999999875 6999999986521
Q ss_pred c---eee-----eeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCCCc
Q 011368 346 T---PVA-----TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 346 ~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
. +.. ...+|...+ ++++|+|++ .+||+|+.||+|++|++.+++.
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V---------------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDV---------------NCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred CcceeeEEEEeeecccccCcE---------------eEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 1 111 123454433 699999987 5999999999999999988744
No 53
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.2e-36 Score=272.42 Aligned_cols=246 Identities=15% Similarity=0.169 Sum_probs=204.7
Q ss_pred eEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (487)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
...++.+|. +.|.+++| +|++.+|++++.|++|++||+.++.....
T Consensus 5 ~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~-------------------- 50 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEVRS-------------------- 50 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred eEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCceeEE--------------------
Confidence 457788998 89999999 57899999999999999999998765443
Q ss_pred cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368 173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 251 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 251 (487)
+..|...|.+++|+|++++|++| .|++|++||+.++.. .. .+.+
T Consensus 51 ---------------------------~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~-------~~~~ 95 (304)
T 2ynn_A 51 ---------------------------IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-VV-------DFEA 95 (304)
T ss_dssp ---------------------------EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-EE-------EEEC
T ss_pred ---------------------------eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE-EE-------EEeC
Confidence 36788999999999999999999 999999999995543 32 3568
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEE
Q 011368 252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS 330 (487)
Q Consensus 252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s 330 (487)
|...|.+++|+|++ .+|++++.|+.|++||++++..+ ...+.+ |...|.+++|+| ++.+|++
T Consensus 96 h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~~~~~~-------------h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 96 HPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---EQTFEG-------------HEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp CSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---EEEECC-------------CCSCEEEEEECTTCTTEEEE
T ss_pred CCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---hhhhcc-------------cCCcEEEEEECCCCCCEEEE
Confidence 99999999999999 99999999999999999876422 134444 578999999999 6788998
Q ss_pred Ee-CCeEEEEeCCCCCceeeeee-cccccccccccccCCCCcceeeEEEEcC--CCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368 331 RD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGG 406 (487)
Q Consensus 331 ~~-d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~sg~~dg~i~iwd~~~~~~~~ 406 (487)
|+ |+.|++||++. ..+...+. .+...+ ..++|+| ++++|++|+.|+.|++||++++ ...
T Consensus 159 gs~D~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~ 221 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCV 221 (304)
T ss_dssp EETTSEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEE
T ss_pred EeCCCeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccc
Confidence 86 69999999986 44444443 333322 4778876 7889999999999999999987 568
Q ss_pred EEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368 407 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 407 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
..+.+|...+..++|+| ++.. |++|+.|+. ++|+.
T Consensus 222 ~~~~~h~~~v~~~~~~p--~~~~-----l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 222 ATLEGHMSNVSFAVFHP--TLPI-----IISGSEDGTLKIWNS 257 (304)
T ss_dssp EEEECCSSCEEEEEECS--SSSE-----EEEEETTSCEEEEET
T ss_pred eeeCCCCCCEEEEEECC--CCCE-----EEEEcCCCeEEEEEC
Confidence 88999999999999998 5556 899999999 99954
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-37 Score=292.57 Aligned_cols=261 Identities=12% Similarity=0.139 Sum_probs=193.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|.++|++++|+|++++||+|+.|+.|+||++.++. .+....+.+|.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~--------- 55 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHD--------- 55 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCS---------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCC---------
Confidence 45689999999999999999999999999998762 12356788898
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|.+++| +|++++|++++.|++|++||+.+++ ....
T Consensus 56 ---~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------------------------------------- 93 (377)
T 3dwl_C 56 ---KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQT------------------------------------- 93 (377)
T ss_dssp ---SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCE-------------------------------------
T ss_pred ---ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeee-------------------------------------
Confidence 89999999 5789999999999999999998876 1111
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc--eeEEeecCCCCCCC-CCCcEEEEEEecCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD-LTEVITSAEFHPIY 265 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~-~~~~v~~v~~~p~~ 265 (487)
. .+.+|...|.+++|+|++++|+++ .|+.|++||++.... ... .+.+ |...|.+++|+|++
T Consensus 94 -------~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 94 -------L-VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK-------HLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp -------E-ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE-------EECSSCCSCEEEEEECTTS
T ss_pred -------e-EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee-------EeecccCCCeEEEEEcCCC
Confidence 0 136899999999999999999999 999999999985442 222 2345 89999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccc-cCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
++|++++.|+.|++||++.............+.... ......+ +|...|.+++|+|++++|++++ |+.|++||+++
T Consensus 159 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 159 -VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp -SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred -CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999997543211100000000000 0011112 6788999999999999999986 59999999987
Q ss_pred CCce----eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 344 DSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 344 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+.. +..+..|...+ ++++|+|++++|++|+.|+.+ +|+...
T Consensus 237 -~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 237 -PEQPPRALITVKLSQLPL---------------RSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp -TTSCEEECCCEECSSSCE---------------EEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred -CCCcceeeEeecCCCCce---------------EEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 555 67777777654 699999999999999877655 776654
No 55
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-36 Score=288.11 Aligned_cols=345 Identities=13% Similarity=0.140 Sum_probs=236.1
Q ss_pred ccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 29 ~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..|.+.|++++|+| ++++||+|+.||+|+|||+.+.+.. ...+....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~-~h~------ 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTY-DCS------ 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEE-ECS------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeec-cCC------
Confidence 45789999999999 9999999999999999998762210 001111222 366
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcc---ccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..|.+++| ++++.+|++++.|++|++||+. .++........
T Consensus 112 ------~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------------------------- 155 (437)
T 3gre_A 112 ------STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---------------------------- 155 (437)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE----------------------------
T ss_pred ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc----------------------------
Confidence 88999999 5789999999999999999995 44433321100
Q ss_pred eeeeeeeccceeeee-ccc--CCCceeEEE--eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC--CCCcE
Q 011368 185 GYHLEWTENMATKVY-PHA--HDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD--LTEVI 256 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~-~~~--~~~~v~~i~--~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v 256 (487)
..+.+ +.. +...+.++. +++++++|+++ .|+.|++||+++.. .... +.+ |...|
T Consensus 156 ----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~-------~~~~~h~~~v 217 (437)
T 3gre_A 156 ----------CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-RLQI-------IENSPRHGAV 217 (437)
T ss_dssp ----------EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-EEEE-------EECCGGGCCE
T ss_pred ----------eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eeEE-------EccCCCCCce
Confidence 11111 122 677788888 67899999999 99999999999544 4433 233 78899
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc----CCCCEEEEEe
Q 011368 257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA----NDGQHLLSRD 332 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~s~~ 332 (487)
++++|+|++ .+|++++.||.|++||+++++.. ..+.. .|...|.+++|+ |++.+|++++
T Consensus 218 ~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 218 SSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWSF------------GDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp EEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEBC------------TTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred EEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEec------------CCCCceEEEEeccccCCCccEEEEEc
Confidence 999999999 99999999999999999987654 44431 235689999665 5677999986
Q ss_pred -CCeEEEEeCCCCCceeeeeeccccccccccc-----------ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 333 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD-----------LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 333 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
|+.|++||+++ ++.+..+..|...+....- +........|++++|+ ++++|++|+.||.|++||+.
T Consensus 281 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 281 SKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp TTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred CCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 59999999987 8888888877644331110 0000112234689999 78999999999999999999
Q ss_pred CCCceeEEEeccCCccccceEeeC-CccccccccceeeecccceecC-CCCCccccccccCCCeEEEEEcCC--CCEEEE
Q 011368 401 VGSAGGITVEAGKNENRKPILQAA-PRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPT--TNLIAC 476 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~l~~g~~~~~~~w-~~~~~~~~~~~~~~~v~~~~~spd--~~~la~ 476 (487)
++ .....+.+|............ ....+ +... ++ ...........|...|++++|+++ +.+|++
T Consensus 359 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s 426 (437)
T 3gre_A 359 EL-SSSKAVISPSRFSDVFIPTQVTANLTM-----LLRK------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA 426 (437)
T ss_dssp CG-GGCEEEECC--CCCEEEEEEEETTEEE-----EEEE------CC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred Cc-ccceEEecccccCceEEEEEeecceEE-----EEEe------cccccccccCcccccccceeeEeeeccCCceEEEE
Confidence 88 446677776543222221110 01111 1111 01 011122233468999999999998 779999
Q ss_pred ecCCe-EEEEe
Q 011368 477 ANGNS-LFFHY 486 (487)
Q Consensus 477 ~s~~~-~~i~~ 486 (487)
|+.|+ ++||+
T Consensus 427 ~~~dG~I~iw~ 437 (437)
T 3gre_A 427 CDNSGLIGIFQ 437 (437)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCceEEEeC
Confidence 99766 88885
No 56
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=282.08 Aligned_cols=304 Identities=12% Similarity=0.168 Sum_probs=222.2
Q ss_pred cccCcEEEEEEcCCCCEE-EEEec---CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l-~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
.|.+.|++++|+|+++.+ ++|+. ||.|+||++.+++.. .....+|.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~---- 65 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------LLREIEKA---- 65 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------EEEEEEES----
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------ceeeeccc----
Confidence 488999999999999655 56665 899999999877531 12222566
Q ss_pred cccccccccceeEEEEEecCC---CcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
..|.+++|+ ++ +.+|++++.|+.|++||+.+++ ....
T Consensus 66 --------~~v~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------- 106 (357)
T 3i2n_A 66 --------KPIKCGTFG--ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS----------------------------- 106 (357)
T ss_dssp --------SCEEEEECT--TCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-----------------------------
T ss_pred --------CcEEEEEEc--CCCCCCceEEEecCCCeEEEEeCCCCCccEEE-----------------------------
Confidence 889999994 55 6899999999999999998775 3222
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEE------eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSIS------NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 254 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~------~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 254 (487)
+.+|...|.+++ |+|++++|+++ .|+.|++||++........+... ...+..
T Consensus 107 ------------------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~ 165 (357)
T 3i2n_A 107 ------------------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV---QGENKR 165 (357)
T ss_dssp ------------------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC---TTSCCC
T ss_pred ------------------EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc---CCCCCC
Confidence 378999999995 57899999999 99999999999665444433110 111234
Q ss_pred cEEEEE----EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC---CCCE
Q 011368 255 VITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN---DGQH 327 (487)
Q Consensus 255 ~v~~v~----~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~---~~~~ 327 (487)
.+.+++ |+|++ .+|++++.||.|++||+++++.. . ... |...|.+++|+| ++.+
T Consensus 166 ~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~-~~~-------------~~~~v~~~~~~~~~~~~~~ 226 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----W-ETN-------------IKNGVCSLEFDRKDISMNK 226 (357)
T ss_dssp CEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----E-EEE-------------CSSCEEEEEESCSSSSCCE
T ss_pred ceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----e-ecC-------------CCCceEEEEcCCCCCCCCE
Confidence 788998 67898 99999999999999999987642 1 122 367899999999 8999
Q ss_pred EEEEe-CCeEEEEeCCCCCceeeeee-----cccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeC
Q 011368 328 LLSRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG 400 (487)
Q Consensus 328 l~s~~-d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~ 400 (487)
|++++ ++.|++||+++ +..+..+. .|...+ ++++|+|+++ +|++|+.||.|++||+.
T Consensus 227 l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 227 LVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred EEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 99886 59999999986 55544443 565543 6999999998 89999999999999998
Q ss_pred CCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEE-EecC
Q 011368 401 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIA-CANG 479 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la-~~s~ 479 (487)
++.... .... ++.. .... +. .........|...|.+++|+|++++|+ +++.
T Consensus 291 ~~~~~~-~~~~--------------~g~~-----~~~~---~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~ 342 (357)
T 3i2n_A 291 YPIQRS-KKDS--------------EGIE-----MGVA---GS-----VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF 342 (357)
T ss_dssp CCSCC---CCT--------------TSCC-----CCCC---CE-----EEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCcccc-cccC--------------CCCc-----cccc---cc-----cceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence 764321 1000 0000 0000 00 012234456788999999999999998 6775
Q ss_pred C-eEEEEe
Q 011368 480 N-SLFFHY 486 (487)
Q Consensus 480 ~-~~~i~~ 486 (487)
| .+++|+
T Consensus 343 d~~i~iw~ 350 (357)
T 3i2n_A 343 DQTVRVLI 350 (357)
T ss_dssp TSEEEEEE
T ss_pred CCcEEEEE
Confidence 4 599996
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=280.99 Aligned_cols=259 Identities=16% Similarity=0.225 Sum_probs=206.9
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|.+.|++++|+|++++||+|+.||.|+||++... ..+....+.+|.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~h~------ 55 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHE------ 55 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------------------EEEEEEEECCCS------
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------------cceeeeEecCCC------
Confidence 3468999999999999999999999999999999744 234567888998
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++|++..++.+|++++.|+.|++||+.+++.....
T Consensus 56 ------~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------------------------------- 95 (379)
T 3jrp_A 56 ------GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA---------------------------------- 95 (379)
T ss_dssp ------SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEE----------------------------------
T ss_pred ------CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEee----------------------------------
Confidence 8999999964334899999999999999999987632221
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP- 263 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p- 263 (487)
.+..|...|.+++|+|+ +++|+++ .|+.|++||+......... .+.+|...|.+++|+|
T Consensus 96 -----------~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 96 -----------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGVNSASWAPA 158 (379)
T ss_dssp -----------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEECCTTCEEEEEECCC
T ss_pred -----------eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecCCCCceEEEEEcCc
Confidence 13678999999999999 9999999 9999999999865332221 2467889999999999
Q ss_pred ------------CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---CCEE
Q 011368 264 ------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHL 328 (487)
Q Consensus 264 ------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l 328 (487)
++ .+|++++.||.|++||++++.........+. +|...|.+++|+|+ +++|
T Consensus 159 ~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 159 TIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------------GHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp C----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEEC-------------CCSSCEEEEEECCCCSSSEEE
T ss_pred cccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEe-------------cccCcEeEEEECCCCCCCCeE
Confidence 57 9999999999999999987653322223333 45789999999999 8999
Q ss_pred EEEe-CCeEEEEeCCCCCce--eeeee--cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 329 LSRD-YMNLKLWDIRMDSTP--VATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 329 ~s~~-d~~i~iwd~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
++++ |+.|++||++..... ...+. .+... +++++|+|++++|++++.||.|++|++..+.
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 9886 699999999863211 11121 23332 2699999999999999999999999998654
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.7e-35 Score=285.33 Aligned_cols=316 Identities=12% Similarity=0.206 Sum_probs=244.3
Q ss_pred cccccCc-EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~-V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...|.+. +.|++| ++++|++|+.||+|++||+.+++. ...+.+|.
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~---------------------------~~~~~~h~----- 162 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF---------------------------LLQLSGHD----- 162 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-----
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE---------------------------EEEEeCCC-----
Confidence 3457776 467666 567999999999999999876653 57888999
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
+.|.+++| ++++ +|++|+.|++|++||+.+++....
T Consensus 163 -------~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---------------------------------- 198 (464)
T 3v7d_B 163 -------GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCTHV---------------------------------- 198 (464)
T ss_dssp -------SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEEEE----------------------------------
T ss_pred -------cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEEEE----------------------------------
Confidence 99999999 4555 899999999999999998875543
Q ss_pred eeeeeccceeeeecccCCCceeEEEeC--CCCCEEEEe-cCCeEEEEEccCCCceeEEeecC---------------CCC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMK---------------PSN 248 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------------~~~ 248 (487)
+.+|...|.+++|+ ++++++++| .|+.|++||+............. ...
T Consensus 199 -------------~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 199 -------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp -------------ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred -------------ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 37899999999998 578899999 99999999998544321100000 013
Q ss_pred CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368 249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 328 (487)
Q Consensus 249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 328 (487)
+.+|...+.++ ++++ .++++++.||.|++||+++++.. ..+.+ |...|.+++|+|+++++
T Consensus 266 ~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILSG-------------HTDRIYSTIYDHERKRC 325 (464)
T ss_dssp ECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEEETTTTEE
T ss_pred ccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC-------------CCCCEEEEEEcCCCCEE
Confidence 46788888877 5677 89999999999999999987654 45554 47899999999999999
Q ss_pred EEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368 329 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 407 (487)
Q Consensus 329 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~ 407 (487)
++|+ |+.|++||+++ ++++..+.+|...+ .+++|+ +++|++|+.||.|++||+.++... .
T Consensus 326 ~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~-~ 386 (464)
T 3v7d_B 326 ISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRGWDANDYSRK-F 386 (464)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCEE-E
T ss_pred EEEeCCCcEEEEECCC-CcEEEEEeCCCCcE---------------EEEEEc--CCEEEEEeCCCcEEEEECCCCcee-e
Confidence 9986 59999999987 88999999888754 578887 579999999999999999987432 2
Q ss_pred EEeccCCccccceEeeCCccccccccceeeecccce-ecCC--CCCcccc-ccccCCCeEEEEEcCCCCEEEEecCCeEE
Q 011368 408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHEL-SYNLSSKLLHLAWHPTTNLIACANGNSLF 483 (487)
Q Consensus 408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~--~~~~~~~-~~~~~~~v~~~~~spd~~~la~~s~~~~~ 483 (487)
.. .+...+..+.+++ ++.+ +++|+ ++. ++|+ .++.+.. ...+...|.+++|+ +..+++++++++..
T Consensus 387 ~~-~~~~~~~~~~~~~--~~~~-----l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 387 SY-HHTNLSAITTFYV--SDNI-----LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQS 456 (464)
T ss_dssp EE-ECTTCCCEEEEEE--CSSE-----EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred ee-cCCCCccEEEEEe--CCCE-----EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence 22 3566677778887 5566 78887 777 9994 4444443 56788999999997 33444455555543
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-36 Score=287.09 Aligned_cols=310 Identities=14% Similarity=0.181 Sum_probs=240.0
Q ss_pred CCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
....+.|...|++++|+|++++|++|+.||.|++|++.+... ..+....+.+|.
T Consensus 60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~~~h~--- 113 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------AINSMARFSNHS--- 113 (416)
T ss_dssp CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------CCCEEEECCCSS---
T ss_pred EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------cccchhhccCCc---
Confidence 344567899999999999999999999999999999876321 122467788898
Q ss_pred ccccccccccceeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|.+++|+ |+ +.+|++++.|+.|++||+.+++........
T Consensus 114 ---------~~v~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------------------------- 155 (416)
T 2pm9_A 114 ---------SSVKTVKFN--AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP--------------------------- 155 (416)
T ss_dssp ---------SCCCEEEEC--SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC---------------------------
T ss_pred ---------cceEEEEEc--CCCCCEEEEEcCCCeEEEEECCCCccccccccc---------------------------
Confidence 899999994 65 789999999999999999877511000000
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
... .....|...|.+++|+|+ +.+|+++ .|+.|++||+++. .....+... ....+|...|.+++|
T Consensus 156 ----------~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~-~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 156 ----------LTP-GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYT-SPNSGIKQQLSVVEW 222 (416)
T ss_dssp ----------BCC-CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCC-CCSSCCCCCEEEEEE
T ss_pred ----------ccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEecc-ccccccCCceEEEEE
Confidence 000 012578999999999998 7899999 9999999999954 444333111 112334788999999
Q ss_pred ecCCCCEEEEEeCCC---eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-CCeE
Q 011368 262 HPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNL 336 (487)
Q Consensus 262 ~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d~~i 336 (487)
+|++..++++++.|+ .|++||++++... ...+. .+|...|.+++|+| ++++|++++ |+.|
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~------------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLN------------QGHQKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCC------------SCCSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEee------------cCccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 999757999999998 9999999986322 13333 03578999999999 899999986 6999
Q ss_pred EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCCCceeEE-------
Q 011368 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGIT------- 408 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~~~~~~~------- 408 (487)
++||+++ ++++..+..|...+ ++++|+|++ .+|++++.||.|++|++.++......
T Consensus 288 ~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 351 (416)
T 2pm9_A 288 LLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQ 351 (416)
T ss_dssp EEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------
T ss_pred EEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccc
Confidence 9999997 88888998887754 589999999 89999999999999999876432211
Q ss_pred ---------------------------EeccCCccccceEeeCCccccccccceeeecccce-ecCCCC
Q 011368 409 ---------------------------VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 449 (487)
Q Consensus 409 ---------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~ 449 (487)
...|..++..++|+| ++++ +++|+.|+. ++|+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~-----la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 352 QESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF--GGKL-----VQITPDGKGVSITNPK 413 (416)
T ss_dssp ---------------CCSCCCSSCCCCCSTTCCCSCCCEEET--TTEE-----ECBCTTSSCBCCBCCC
T ss_pred cCCcccccccccccccccccccccccCCccccCCccceEEee--CCeE-----EEEeCCCCeEEEEEec
Confidence 111667788899998 7888 999999999 999653
No 60
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-35 Score=276.22 Aligned_cols=256 Identities=14% Similarity=0.181 Sum_probs=198.7
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...|++++|+|++.+|++|+.|++|+|||+.+++. +..+.+|.
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------------~~~~~~h~------ 118 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT---------------------------YKRFVGHQ------ 118 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE---------------------------EEEEECCC------
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE---------------------------EEEEcCCC------
Confidence 346899999999999999999999999999999887653 57788998
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| +|++.+|++++.|++|++||+.........
T Consensus 119 ------~~v~~v~~--sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~---------------------------------- 156 (343)
T 2xzm_R 119 ------SEVYSVAF--SPDNRQILSAGAEREIKLWNILGECKFSSA---------------------------------- 156 (343)
T ss_dssp ------SCEEEEEE--CSSTTEEEEEETTSCEEEEESSSCEEEECC----------------------------------
T ss_pred ------CcEEEEEE--CCCCCEEEEEcCCCEEEEEeccCCceeeee----------------------------------
Confidence 89999999 578999999999999999999743322110
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCC----------CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 256 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~----------~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 256 (487)
...+|...|.+++|+|++ .+|+++ .|+.|++||.. ..... .+.+|...|
T Consensus 157 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~-------~~~~h~~~v 216 (343)
T 2xzm_R 157 -----------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRY-------TFKAHESNV 216 (343)
T ss_dssp -----------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEE-------EEECCSSCE
T ss_pred -----------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeE-------EEcCccccc
Confidence 014788899999999986 789998 99999999954 33322 346899999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeE
Q 011368 257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 336 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i 336 (487)
.+++|+|++ ++|++++.||.|++||++..... ...+.. ...|.+++|+|++.+++++.|+.|
T Consensus 217 ~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~--------------~~~v~~v~~sp~~~~la~~~d~~v 278 (343)
T 2xzm_R 217 NHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA--------------GSTINQIAFNPKLQWVAVGTDQGV 278 (343)
T ss_dssp EEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC--------------SSCEEEEEECSSSCEEEEEESSCE
T ss_pred eEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC--------------CCcEEEEEECCCCCEEEEECCCCE
Confidence 999999999 99999999999999999543321 122222 356999999999999998889999
Q ss_pred EEEeCCCCCceee--eeecccccccccccc-cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 337 KLWDIRMDSTPVA--TFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 337 ~iwd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
++||+.+ ..... .+..+.. ...... .+.. .+++++|+|+|++|++|+.||.|++|+++++
T Consensus 279 ~iw~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 279 KIFNLMT-QSKAPVCTIEAEPI--TKAEGQKGKNP---QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEESSS-CCSCSEEECCCCSG--GGBTTBCCSCC---CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEEeCC-CCCCceEEeecCcc--hhhhhhcCCCC---ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9999976 44332 3321110 000000 0111 2369999999999999999999999999765
No 61
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-35 Score=276.52 Aligned_cols=247 Identities=21% Similarity=0.346 Sum_probs=206.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|...|.+++|+|+|++|++|+.|+.+++|++...... ........+.+|.
T Consensus 104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~---------------------~~~~~~~~~~~h~-------- 154 (354)
T 2pbi_B 104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE---------------------NMAAKKKSVAMHT-------- 154 (354)
T ss_dssp CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC---------------------CSGGGCEEEEECS--------
T ss_pred cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc---------------------cccccceeeeccC--------
Confidence 36778999999999999999999999999998654321 0112245567788
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|.+++| ++++..|++++.|++|++||+.+++....
T Consensus 155 ----~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~~~~~------------------------------------- 191 (354)
T 2pbi_B 155 ----NYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQS------------------------------------- 191 (354)
T ss_dssp ----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEE-------------------------------------
T ss_pred ----CcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCeEEEE-------------------------------------
Confidence 88999999 57888999999999999999998875543
Q ss_pred eeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.+|...|.+++|+| ++++|++| .|+.|++||++++ .+... +.+|...|.+++|+|++
T Consensus 192 ----------~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~-------~~~h~~~v~~v~~~p~~- 252 (354)
T 2pbi_B 192 ----------FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQA-------FETHESDVNSVRYYPSG- 252 (354)
T ss_dssp ----------EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEE-------ECCCSSCEEEEEECTTS-
T ss_pred ----------EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEE-------ecCCCCCeEEEEEeCCC-
Confidence 378999999999987 57899999 9999999999954 44433 46899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.+|++++.|+.|++||++.++.. ..+..+ .+...+.+++|+|+|++|++|+ |+.|++||+.+ +
T Consensus 253 ~~l~s~s~D~~v~lwd~~~~~~~----~~~~~~-----------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~ 316 (354)
T 2pbi_B 253 DAFASGSDDATCRLYDLRADREV----AIYSKE-----------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK-G 316 (354)
T ss_dssp SEEEEEETTSCEEEEETTTTEEE----EEECCT-----------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT-C
T ss_pred CEEEEEeCCCeEEEEECCCCcEE----EEEcCC-----------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCC-C
Confidence 99999999999999999987533 333321 1234689999999999999986 59999999987 7
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd 398 (487)
..+..+.+|...+ ++++|+|||++|++|+.||.|+||+
T Consensus 317 ~~~~~l~~h~~~v---------------~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 SRVSILFGHENRV---------------STLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ceEEEEECCCCcE---------------EEEEECCCCCEEEEEcCCCCEEecC
Confidence 8888888888755 6999999999999999999999996
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-35 Score=276.60 Aligned_cols=310 Identities=10% Similarity=0.044 Sum_probs=214.2
Q ss_pred CcEEEEEEcCCCCEEEEEecC-------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
-||+|++|+|||++||+|+.+ +.|++|+++..... ....+ .......+.+|+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~------------~~~~~~~l~~~~---- 73 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQF------------HILSEFALEDND---- 73 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHE------------EEEEEEECCTTS----
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeee------------eeeeEEEccCCC----
Confidence 479999999999999999753 35999999876532 01111 011123466777
Q ss_pred cccccccccceeEEEEEecCCCcEEEEE-----------eCCCcEEEEEccccceeEe--eecCCCCceeeeeccccccc
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQKVKKI--KEMDHFPFVSSENTLLAEKN 172 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~-----------~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 172 (487)
..|.++++. +..++++ +.|+.+++|++........ .....
T Consensus 74 --------~~v~s~~~~----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~--------------- 126 (365)
T 4h5i_A 74 --------DSPTAIDAS----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF--------------- 126 (365)
T ss_dssp --------CCCCEEEEE----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECS---------------
T ss_pred --------CceEEEEeC----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeece---------------
Confidence 778888873 4456654 4577889998875432111 00000
Q ss_pred cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEE--e-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368 173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNM 249 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 249 (487)
.....+...+.+++|+|||+++++ + .|++|++||+++.. ....+
T Consensus 127 -------------------------~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~~~~~------- 173 (365)
T 4h5i_A 127 -------------------------DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-EKFEI------- 173 (365)
T ss_dssp -------------------------SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-EEEEE-------
T ss_pred -------------------------eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-EEEEe-------
Confidence 001345667899999999999864 4 68999999999544 33321
Q ss_pred CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368 250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329 (487)
Q Consensus 250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 329 (487)
.|...|.+++|+|+| +++++++.++ +++|+..++..... ... .+|...|.+++|+|++++++
T Consensus 174 -~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~~~~~~~--~~~-------------~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 174 -ETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVTGSCIAR--KTD-------------FDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp -ECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTTCCEEEE--ECC-------------CCTTEEEEEEEEEETTEEEE
T ss_pred -CCCCceEEEEEccCC-ceEEecccee-EEEEEeccCcceee--eec-------------CCCCCCEEEEEEcCCCCEEE
Confidence 366789999999999 9999988655 66666666543210 111 23567899999999999999
Q ss_pred EEe-CC----eEEEEeCCCCCce---eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 330 SRD-YM----NLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 330 s~~-d~----~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+++ ++ .+++|++...... ...+..|...+ ++++|||||++||+|+.|++|+|||+.+
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V---------------~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI---------------TSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE---------------EEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCCCe---------------EeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 875 43 6888988752211 23445555533 6999999999999999999999999999
Q ss_pred CCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeE
Q 011368 402 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLL 463 (487)
Q Consensus 402 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~ 463 (487)
++.....+++|..+|++++|+| ++++ |++|+.|+. ++|+.............++.
T Consensus 301 ~~~~~~~~~gH~~~V~~v~fSp--dg~~-----laS~S~D~tvrvw~ip~~~~~~~s~~~~l~ 356 (365)
T 4h5i_A 301 LSMSKIFKQAHSFAITEVTISP--DSTY-----VASVSAANTIHIIKLPLNYANYTSMKQKIS 356 (365)
T ss_dssp TEEEEEETTSSSSCEEEEEECT--TSCE-----EEEEETTSEEEEEECCTTTTC---------
T ss_pred CcEEEEecCcccCCEEEEEECC--CCCE-----EEEEeCCCeEEEEEcCCCCcCccCccccce
Confidence 8554445689999999999999 7888 999999999 99966544443333333333
No 63
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-36 Score=283.25 Aligned_cols=296 Identities=8% Similarity=0.020 Sum_probs=217.1
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...|.+++|+|||+++|+++.|++|+ |...++ .+++|.
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~---------- 52 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNS---------- 52 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBG----------
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc------------------------------eecCCC----------
Confidence 46799999999999999999999999 644442 347888
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
..|.+++|+ |+| .++.+.+|+.......
T Consensus 53 --~~v~~V~Fs--Pdg-------~~~~~~~~~~~~~~~~----------------------------------------- 80 (588)
T 2j04_A 53 --KNLFHVKEF--PLE-------FENKLDFELAQQNGLL----------------------------------------- 80 (588)
T ss_dssp --GGTEEEEEE--CCC-------CCCTTTTSCCCSSCSS-----------------------------------------
T ss_pred --ccEEEEEEC--CCC-------CcceEEEEeCCCceEe-----------------------------------------
Confidence 889999995 676 5666666554332211
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC-----cEEEEEEecCC
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-----VITSAEFHPIY 265 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~~p~~ 265 (487)
...|...|.+++|+|+|+.||++ .||.|++||.+. ++.. +. |.. .+.+++|+|+|
T Consensus 81 --------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~-------l~-~~~~~~~~sv~svafSPDG 141 (588)
T 2j04_A 81 --------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTN-------LD-SKGNLSSRTYHCFEWNPIE 141 (588)
T ss_dssp --------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEE-------CC-CSSCSTTTCEEEEEECSSS
T ss_pred --------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeee-------cc-CCCccccccEEEEEEcCCC
Confidence 12568889999999999999999 999999999652 3332 23 443 59999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccc---cceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 342 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~ 342 (487)
++|++|+.||+|+|||+.++..... .+..+..| ..+|..+|.+++|+||| +++++.|+.|++||+.
T Consensus 142 -~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~---------~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 142 -SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS---------DAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVS 210 (588)
T ss_dssp -SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS---------CTTCCCCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred -CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc---------cccccccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence 9999999999999999998753110 12444332 24567899999999999 5555668999999997
Q ss_pred CCCce---eeeee-cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368 343 MDSTP---VATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 418 (487)
Q Consensus 343 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 418 (487)
. +.. ...++ +|...+ .+++|+ |+.||+++ +++|++||+.+++.... ..+|...+..
T Consensus 211 ~-~~~~~~~~tL~~~h~~~V---------------~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-~~gh~~~V~~ 270 (588)
T 2j04_A 211 A-SSHQPVSRMIQNASRRKI---------------TDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-KTGSLENFHI 270 (588)
T ss_dssp S-SSSCCCEEEEECCCSSCC---------------CCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-ECSCCSCCCE
T ss_pred C-CccccceeeecccccCcE---------------EEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-EcCCCceEEE
Confidence 6 442 24453 555433 589999 68999887 69999999987743233 3389999999
Q ss_pred ceE--eeCCccccccccceeeecccce------------------------ecCCCCCccccccccCCCeEEEEEcCCCC
Q 011368 419 PIL--QAAPRARRSSLSNLTRGLYRQA------------------------HENSSSGHHELSYNLSSKLLHLAWHPTTN 472 (487)
Q Consensus 419 ~~~--~~~~~~~~~~~~~l~~g~~~~~------------------------~~w~~~~~~~~~~~~~~~v~~~~~spd~~ 472 (487)
+++ +| ++.. ++++..++. ++|+..............|.+++|||||+
T Consensus 271 va~~~s~--d~~~-----La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 271 IPLNHEK--ESTI-----LLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY 343 (588)
T ss_dssp EEETTCS--SCEE-----EEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS
T ss_pred EEeeeCC--CCCE-----EEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCC
Confidence 999 66 5555 666665544 44533222222333355699999999999
Q ss_pred EEEEec
Q 011368 473 LIACAN 478 (487)
Q Consensus 473 ~la~~s 478 (487)
.+|+++
T Consensus 344 ~lA~~~ 349 (588)
T 2j04_A 344 SIAIVY 349 (588)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999987
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-34 Score=262.72 Aligned_cols=258 Identities=15% Similarity=0.115 Sum_probs=203.6
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++| |++++|++|+.||.|++||+.+++. ...+..|.
T Consensus 15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~---------------------------~~~~~~~~------- 59 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL---------------------------GTVVYTGQ------- 59 (313)
T ss_dssp CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE---------------------------EEEEEECS-------
T ss_pred hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE---------------------------EEEeecCC-------
Confidence 358999999999 9999999999999999999976643 46677787
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++| +|++.+|++++.|+.|++|++.......
T Consensus 60 -----~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~~------------------------------------- 95 (313)
T 3odt_A 60 -----GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGED------------------------------------- 95 (313)
T ss_dssp -----SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTSC-------------------------------------
T ss_pred -----ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCCC-------------------------------------
Confidence 88999999 4789999999999999999997643111
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-CCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYC 266 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~ 266 (487)
.... +.+|...|.+++| ++++++++ .|+.|++||. ..... .+..|...+.++.|.| ++
T Consensus 96 ------~~~~-~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~-------~~~~~~~~v~~~~~~~~~~- 155 (313)
T 3odt_A 96 ------PLYT-LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVY-------NLQAHNASVWDAKVVSFSE- 155 (313)
T ss_dssp ------C-CE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEE-------EEECCSSCEEEEEEEETTT-
T ss_pred ------cccc-hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEE-------ecccCCCceeEEEEccCCC-
Confidence 1111 3789999999999 57899998 9999999992 22322 2457889999999998 76
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~ 345 (487)
..+++++.||.|++||.... . ..+.. .|...+.+++|+|++. ++++ .++.|++||+++ +
T Consensus 156 ~~l~~~~~d~~i~i~d~~~~--~----~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~ 215 (313)
T 3odt_A 156 NKFLTASADKTIKLWQNDKV--I----KTFSG------------IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-G 215 (313)
T ss_dssp TEEEEEETTSCEEEEETTEE--E----EEECS------------SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-C
T ss_pred CEEEEEECCCCEEEEecCce--E----EEEec------------cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-h
Confidence 99999999999999994332 1 33333 1467899999999998 6665 569999999987 8
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 422 (487)
+++..+..|...+ ++++|+|++ .|++++.||.|++||+.+++ ....+..|..++..+.++
T Consensus 216 ~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~ 275 (313)
T 3odt_A 216 DVLRTYEGHESFV---------------YCIKLLPNG-DIVSCGEDRTVRIWSKENGS-LKQVITLPAISIWSVDCM 275 (313)
T ss_dssp CEEEEEECCSSCE---------------EEEEECTTS-CEEEEETTSEEEEECTTTCC-EEEEEECSSSCEEEEEEC
T ss_pred hhhhhhhcCCceE---------------EEEEEecCC-CEEEEecCCEEEEEECCCCc-eeEEEeccCceEEEEEEc
Confidence 8888898887754 699999999 58899999999999998873 344445554444333333
No 65
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=277.98 Aligned_cols=293 Identities=15% Similarity=0.169 Sum_probs=231.6
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|.+.|++++|+|++++|++|+.||.|++|+ .+++ ....+.+|.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~---------------------------~~~~~~~~~--------- 149 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA---------------------------LLNVLNFHR--------- 149 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC---------------------------EEEEECCCC---------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC---------------------------eeeeccCCC---------
Confidence 677999999999999999999999999999 3222 357788898
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..|.+++| ++++.+|++++.|+.|++||+.+++.............
T Consensus 150 ---~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------------------------- 195 (425)
T 1r5m_A 150 ---APIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS----------------------------- 195 (425)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------------------------------
T ss_pred ---ccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc-----------------------------
Confidence 89999999 57899999999999999999988876554221110000
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
.............+.+++|+|++. ++++ .++.|++||+.... ... .+..|...|.+++|+|++ .+|
T Consensus 196 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~-~~~-------~~~~~~~~i~~~~~~~~~-~~l 262 (425)
T 1r5m_A 196 ---SINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKT-PTG-------KLIGHHGPISVLEFNDTN-KLL 262 (425)
T ss_dssp -------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSS-CSE-------EECCCSSCEEEEEEETTT-TEE
T ss_pred ---ceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCc-eee-------eeccCCCceEEEEECCCC-CEE
Confidence 000000122333489999998865 6666 99999999999543 332 245788999999999999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
++++.|+.|++||+++++.. ..+.. |...|.+++|+|++ ++++++ ++.|++||+++ +..+
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~ 323 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQ----NCFYG-------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLL 323 (425)
T ss_dssp EEEETTSCEEEECSSSBSCS----EEECC-------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEE
T ss_pred EEEcCCCEEEEEECCCCccc----eEecC-------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEe
Confidence 99999999999999987644 44444 46789999999999 777775 69999999987 7888
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC-------------------ceeEEE
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-------------------AGGITV 409 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~-------------------~~~~~~ 409 (487)
..+..|...+ .+++|+|++++|++++.||.|++||+.++. .....+
T Consensus 324 ~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (425)
T 1r5m_A 324 ALSIVDGVPI---------------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY 388 (425)
T ss_dssp EEEECTTCCE---------------EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE
T ss_pred EecccCCccE---------------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh
Confidence 8888777644 699999999999999999999999998774 157888
Q ss_pred eccCC--ccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368 410 EAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 410 ~~~~~--~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
..|.. .+..+.|+| ++++ |++++.|+. ++|+.
T Consensus 389 ~~~~~~~~v~~~~~s~--~~~~-----l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 389 QSSQDNDYIFDLSWNC--AGNK-----ISVAYSLQEGSVVAI 423 (425)
T ss_dssp CCTTCCCCEEEEEECT--TSSE-----EEEEESSSCCEEEEC
T ss_pred cCcccCCceEEEEccC--CCce-----EEEEecCceEEEEee
Confidence 89977 999999998 5666 899999998 88854
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-34 Score=274.59 Aligned_cols=254 Identities=13% Similarity=0.165 Sum_probs=197.2
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC-CCcccccccccccc
Q 011368 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIE 113 (487)
Q Consensus 35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~ 113 (487)
+.+++|++ ..+++++.||.|++|++.+++. ...+.. |.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------~~~~~~~~~------------ 134 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------SALAETDES------------ 134 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------EEEEECCTT------------
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------eEeeecCCC------------
Confidence 44566665 4577888999999999987754 233333 66
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.+++| ++++.+|++++.||.|++||+.+++....
T Consensus 135 ~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------- 171 (401)
T 4aez_A 135 TYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRT----------------------------------------- 171 (401)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------------------------------
T ss_pred CCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEE-----------------------------------------
Confidence 88999999 57899999999999999999988765443
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+.+|...|.+++| +++.|+++ .|+.|++||++........ +.+|...|.+++|+|++ .+|+++
T Consensus 172 ------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~s~ 235 (401)
T 4aez_A 172 ------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCGLAWRSDG-LQLASG 235 (401)
T ss_dssp ------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTS-SEEEEE
T ss_pred ------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeEEEEcCCC-CEEEEE
Confidence 3689999999999 46799999 9999999999855554433 46799999999999999 999999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe---CCeEEEEeCCCCCcee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD---YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~---d~~i~iwd~~~~~~~~ 348 (487)
+.|+.|++||+++++.. ..+.. |...|.+++|+|++. ++++++ |+.|++||+.+ +.++
T Consensus 236 ~~d~~v~iwd~~~~~~~----~~~~~-------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~ 297 (401)
T 4aez_A 236 GNDNVVQIWDARSSIPK----FTKTN-------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARV 297 (401)
T ss_dssp ETTSCEEEEETTCSSEE----EEECC-------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEE
T ss_pred eCCCeEEEccCCCCCcc----EEecC-------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEE
Confidence 99999999999987543 44444 478999999999775 555554 69999999987 7777
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE--EcCCCcEEEEEeCCCCce-eEEEeccCCccccceEe
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSNLLRIFSHGVGSAG-GITVEAGKNENRKPILQ 422 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s--g~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~ 422 (487)
..+..+.. +.+++|+|++++|++ |+.||.|++|++.+++.. ...+.+|...+..++++
T Consensus 298 ~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 298 NTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp EEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred EEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 77764432 269999999999998 558999999999876332 22334444433333333
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.9e-34 Score=266.84 Aligned_cols=272 Identities=13% Similarity=0.139 Sum_probs=207.9
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|++++||+|+.||.|+|||+.++.. ..+....+.+|.
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~------- 57 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD------- 57 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence 46899999999999999999999999999999987643 345567788998
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++|+|..++.+|++++.|+.|++||+..++......
T Consensus 58 -----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~---------------------------------- 98 (351)
T 3f3f_A 58 -----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR---------------------------------- 98 (351)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC----------------------------------
T ss_pred -----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc----------------------------------
Confidence 89999999643268999999999999999998764211000
Q ss_pred eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeE-----EeecCCCCCCCCCCcEEEEE
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFN-----IVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~v~~v~ 260 (487)
....... +..|...|.+++|+|+ +++|+++ .|+.|++||+++...... ...........|...+.+++
T Consensus 99 ---~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (351)
T 3f3f_A 99 ---RWNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS 174 (351)
T ss_dssp ---SEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEE
T ss_pred ---Ccceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEE
Confidence 0001111 3689999999999999 9999999 999999999985542111 00111112236778899999
Q ss_pred EecC---CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC----CEEEEEe-
Q 011368 261 FHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG----QHLLSRD- 332 (487)
Q Consensus 261 ~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~s~~- 332 (487)
|+|+ + .++++++.++.+.+|+...+... ....+ .+|...|.+++|+|++ ++|++++
T Consensus 175 ~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 175 WCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAKL-------------PGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp ECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEEC-------------CCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred eccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeeec-------------CCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 9997 6 99999999999988887765421 11233 3457899999999998 7888886
Q ss_pred CCeEEEEeCCCCC---------------------------------------------ceeeeeecccccccccccccCC
Q 011368 333 YMNLKLWDIRMDS---------------------------------------------TPVATFKIHEHLRPKLCDLYNN 367 (487)
Q Consensus 333 d~~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 367 (487)
|+.|++||++... ..+..+.+|...+
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--------- 309 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV--------- 309 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE---------
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE---------
Confidence 5999999997521 3344444554433
Q ss_pred CCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 368 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 368 ~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
++++|+|++++|++|+.||.|++|++.+++.
T Consensus 310 ------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 310 ------WSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ------EEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ------EEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 6999999999999999999999999998754
No 68
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=272.72 Aligned_cols=346 Identities=16% Similarity=0.206 Sum_probs=230.2
Q ss_pred ccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE-----eeecCCCc
Q 011368 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-----TEFQSHEP 102 (487)
Q Consensus 29 ~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~ 102 (487)
..|.+.|++++|+| ++++|++|+.||.|+|||+.+++... .+ ..... ....+|.
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------~~------------~~~~~~~~~~~~~~~~~- 99 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-------YY------------TCKAVCSIGRDHPDVHR- 99 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-------CE------------EECEEEEECTTCTTCCS-
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-------eE------------eccccccccccccccCC-
Confidence 34899999999999 99999999999999999998876530 00 00000 0113466
Q ss_pred ccccccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 103 EFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 103 ~~~~~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
..|.+++|+ + ++.+|++++.|+.|++||+.+++....
T Consensus 100 -----------~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------- 137 (408)
T 4a11_B 100 -----------YSVETVQWY--PHDTGMFTSSSFDKTLKVWDTNTLQTADV----------------------------- 137 (408)
T ss_dssp -----------SCEEEEEEC--TTCTTCEEEEETTSEEEEEETTTTEEEEE-----------------------------
T ss_pred -----------CcEEEEEEc--cCCCcEEEEEeCCCeEEEeeCCCCcccee-----------------------------
Confidence 899999995 5 677999999999999999998875543
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCC---CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 257 (487)
..+...+.++.++| ++.+++++ .|+.|++||++++. ... .+.+|...|.
T Consensus 138 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~-------~~~~~~~~v~ 190 (408)
T 4a11_B 138 -------------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSH-------ILQGHRQEIL 190 (408)
T ss_dssp -------------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCE-------EECCCCSCEE
T ss_pred -------------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eee-------eecCCCCcEE
Confidence 34677789999988 45589998 99999999998544 333 2467899999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc--ccCccccccccccceeEEEEcCCCCEEEEEe-CC
Q 011368 258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 334 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~ 334 (487)
+++|+|++..+|++++.||.|++||++.+.... ..+..+.. .........+|...|.+++|+|++++|++++ |+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCL---ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCS---EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCccc---ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 999999993369999999999999999875321 33332211 1122233467889999999999999999986 59
Q ss_pred eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
.|++||+.+ +.....+..+...... ... ........+..+++++.|+.|++||+.++ .....+.+|..
T Consensus 268 ~i~vwd~~~-~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~ 335 (408)
T 4a11_B 268 RMRLWNSSN-GENTLVNYGKVCNNSK-------KGL---KFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYK 335 (408)
T ss_dssp CEEEEETTT-CCBCCCCCCCCCCCCS-------SCC---CCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSS
T ss_pred eEEEEECCC-Cccceecccccccccc-------ccc---eeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCC
Confidence 999999987 5544443332211100 000 11222234556777788999999999987 55788999999
Q ss_pred ccccceEeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCCCE--EEEecCCeEEEEe
Q 011368 415 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNL--IACANGNSLFFHY 486 (487)
Q Consensus 415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~--la~~s~~~~~i~~ 486 (487)
.|.+++++| ++.+ |++|+.|+. ++|+....... ......-....+.|.... ...+.++.+.+|+
T Consensus 336 ~v~~~~~s~--~~~~-----l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 336 TVDCCVFQS--NFQE-----LYSGSRDCNILAWVPSLYEPV-PDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp CEEEEEEET--TTTE-----EEEEETTSCEEEEEECC--------------------------------------
T ss_pred eEEEEEEcC--CCCE-----EEEECCCCeEEEEeCCCCCcc-CCCCceEeccccccccceeecccCccCceeecC
Confidence 999999998 6677 999999999 99944322111 111111122334443332 2233355688886
No 69
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.9e-34 Score=260.06 Aligned_cols=253 Identities=16% Similarity=0.188 Sum_probs=194.9
Q ss_pred eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (487)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
..+.+|. +.|.+++| +++|++|++|+.|++|++||+..+...
T Consensus 3 ~~~~~h~------------~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~------------------------ 44 (297)
T 2pm7_B 3 VIANAHN------------EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHK------------------------ 44 (297)
T ss_dssp EECCSCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBC------------------------
T ss_pred eeccCCc------------CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcE------------------------
Confidence 4577888 89999999 689999999999999999999754211
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMD 250 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 250 (487)
.... +.+|...|++++|+++ +++|++| .|++|++||++++.. ... .+.
T Consensus 45 --------------------~~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~-------~~~ 96 (297)
T 2pm7_B 45 --------------------LIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA-------VHA 96 (297)
T ss_dssp --------------------CCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE-------EEC
T ss_pred --------------------EEEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE-------Eee
Confidence 1111 3799999999999864 8999999 999999999985431 221 246
Q ss_pred CCCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC----
Q 011368 251 DLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---- 324 (487)
Q Consensus 251 ~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---- 324 (487)
+|...|.+++|+|+ + .+|++++.|+.|++||++++.... ...+. +|...|.+++|+|+
T Consensus 97 ~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~-------------~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 97 VHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PIIID-------------AHAIGVNSASWAPATIEE 160 (297)
T ss_dssp CCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEEEE-------------CCSSCEEEEEECCCC---
T ss_pred cCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eeeee-------------cccCccceEeecCCcccc
Confidence 78999999999997 7 899999999999999998753210 12333 45789999999997
Q ss_pred ---------CCEEEEEe-CCeEEEEeCCCCCc---eeeeeecccccccccccccCCCCcceeeEEEEcCCC---CEEEEE
Q 011368 325 ---------GQHLLSRD-YMNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATG 388 (487)
Q Consensus 325 ---------~~~l~s~~-d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~sg 388 (487)
+++|++|+ |+.|++||++.... ....+.+|...+ ++++|+|++ ++|++|
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V---------------~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEECCCCSSSEEEEEE
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce---------------EEEEECCCCCCceEEEEE
Confidence 56899886 69999999986222 456777887754 699999984 899999
Q ss_pred cCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEc
Q 011368 389 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH 468 (487)
Q Consensus 389 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~s 468 (487)
+.|++|+|||+.+....... .......|...|.+++|+
T Consensus 226 s~D~~v~iWd~~~~~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~s 263 (297)
T 2pm7_B 226 SQDRTCIIWTQDNEQGPWKK------------------------------------------TLLKEEKFPDVLWRASWS 263 (297)
T ss_dssp ETTSCEEEEEESSTTSCCEE------------------------------------------EESSSSCCSSCEEEEEEC
T ss_pred ECCCcEEEEEeCCCCCccce------------------------------------------eeeecccCCCcEEEEEEC
Confidence 99999999999864211000 000012345688999999
Q ss_pred CCCCEEEEecCCe-EEEEe
Q 011368 469 PTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 469 pd~~~la~~s~~~-~~i~~ 486 (487)
|++++||+++.|+ +.||.
T Consensus 264 ~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp SSSCCEEEEETTSCEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEE
Confidence 9999999988665 88886
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.4e-34 Score=267.90 Aligned_cols=285 Identities=9% Similarity=0.007 Sum_probs=226.2
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|.+.|++++|+|++++|++|+.||.|+||++.+++. ......+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~------------------------~~~~~~~~~~~-------- 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------NVDLLQSLRYK-------- 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------EEEEEEEEECS--------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc------------------------cccceeeeecC--------
Confidence 5889999999999999999999999999999987752 11234455787
Q ss_pred cccccceeEEEEEecCCCc-EEEEEeCCCcEEEEEc-cccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++|+ +++. +|++++.|+.|++||+ .+++...
T Consensus 57 ----~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~------------------------------------ 94 (342)
T 1yfq_A 57 ----HPLLCCNFI--DNTDLQIYVGTVQGEILKVDLIGSPSFQA------------------------------------ 94 (342)
T ss_dssp ----SCEEEEEEE--ESSSEEEEEEETTSCEEEECSSSSSSEEE------------------------------------
T ss_pred ----CceEEEEEC--CCCCcEEEEEcCCCeEEEEEeccCCceEe------------------------------------
Confidence 889999995 5789 9999999999999999 8776432
Q ss_pred eeeeccceeeeeccc--CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC--------CceeEEeecCCCCCCCCCCcE
Q 011368 188 LEWTENMATKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIVDMKPSNMDDLTEVI 256 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~v 256 (487)
+.+ |...|.+++|+| ++.|+++ .|+.|++||++.. .... ..+. |...|
T Consensus 95 ------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~-~~~~v 153 (342)
T 1yfq_A 95 ------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-------NNTK-VKNKI 153 (342)
T ss_dssp ------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-------SSSS-SCCCE
T ss_pred ------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee-------eEEe-eCCce
Confidence 256 999999999999 9999999 9999999999841 2111 2333 88899
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-C
Q 011368 257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y 333 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d 333 (487)
.+++|+|++ +++++.|+.|++||+++ +.... ..... .|...+.+++|+| +++++++++ +
T Consensus 154 ~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~--~~~~~-------------~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 154 FTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG--TIEES-------------GLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp EEEEECSSE---EEEEESTTEEEEEESSCCTTCCC--EEEEC-------------SCSSCEEEEEECSGGGCEEEEEETT
T ss_pred EEEEecCCc---EEEEeCCCeEEEEECCccccccc--eeeec-------------CCCCceeEEEECCCCCCEEEEEecC
Confidence 999999874 99999999999999988 54211 01111 2467899999999 999999986 5
Q ss_pred CeEEEEeCCCC-----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEE
Q 011368 334 MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 408 (487)
Q Consensus 334 ~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~ 408 (487)
|.|++|+++.. ......+..|..... ..+....+++++|+|++++|++|+.||.|++||+.++ .....
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~ 288 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKN 288 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEE
T ss_pred CcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-hHhhh
Confidence 99999999874 277778877754110 0001112369999999999999999999999999987 45777
Q ss_pred Eecc-CCccccceEeeCCccccccccceeeecccce
Q 011368 409 VEAG-KNENRKPILQAAPRARRSSLSNLTRGLYRQA 443 (487)
Q Consensus 409 ~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~ 443 (487)
+.+| ..++..++ | ++.+ |++|+.|+.
T Consensus 289 ~~~~h~~~v~~~~--~--~~~~-----l~s~s~Dg~ 315 (342)
T 1yfq_A 289 FAKFNEDSVVKIA--C--SDNI-----LCLATSDDT 315 (342)
T ss_dssp CCCCSSSEEEEEE--E--CSSE-----EEEEEECTH
T ss_pred hhcccCCCceEec--C--CCCe-----EEEEecCCc
Confidence 8888 99999888 4 6777 999999886
No 71
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-33 Score=270.03 Aligned_cols=281 Identities=13% Similarity=0.176 Sum_probs=229.9
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------ 147 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 147 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 4678999975 5788775 899999999888642 223445666
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|++|+| +|+|++|++|+.|++|++||+.+++....
T Consensus 148 ~~V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~----------------------------------------- 184 (420)
T 4gga_A 148 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN----------------------------------------- 184 (420)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE-----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEE-----------------------------------------
Confidence 88999999 68999999999999999999998876544
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+.+|...+.+++++ +..+++| .|+.+++||.......... +.+|...+..+.|+|++ .+++++
T Consensus 185 ------~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~~~~~~~g-~~l~s~ 248 (420)
T 4gga_A 185 ------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWAPDG-RHLASG 248 (420)
T ss_dssp ------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTS-SEEEEE
T ss_pred ------EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE-------ecccccceeeeeecCCC-Ceeeee
Confidence 37899999998875 6899999 9999999999866555443 56899999999999999 999999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE--e-CCeEEEEeCCCCCcee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--D-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~--~-d~~i~iwd~~~~~~~~ 348 (487)
+.|+.+++||...++.......... .|...|.+++|+|++. +++++ + |+.|++||+.+ +.++
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~-------------~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~ 314 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFT-------------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACL 314 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEEC-------------CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEE
T ss_pred eccccceEEeeccccccceeeeeec-------------ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccc
Confidence 9999999999988764332233333 3578999999999765 44443 2 69999999997 8888
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
..+..+... .++.|+|+++.+++++ .|+.|+|||+.++ ..+.++.+|.+.|.+++|+| +
T Consensus 315 ~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~sp--d 375 (420)
T 4gga_A 315 SAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSP--D 375 (420)
T ss_dssp EEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECT--T
T ss_pred eeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcC--C
Confidence 887766543 4899999999988765 7899999999988 55789999999999999998 7
Q ss_pred cccccccceeeecccce-ecCCCCC
Q 011368 427 ARRSSLSNLTRGLYRQA-HENSSSG 450 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~-~~w~~~~ 450 (487)
+.+ |++|+.|+. ++|+..+
T Consensus 376 g~~-----l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 376 GAT-----VASAAADETLRLWRCFE 395 (420)
T ss_dssp SSC-----EEEEETTTEEEEECCSC
T ss_pred CCE-----EEEEecCCeEEEEECCC
Confidence 777 999999999 9996643
No 72
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-33 Score=258.52 Aligned_cols=246 Identities=13% Similarity=0.254 Sum_probs=203.6
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|.+++|+|++++|++|+.||.|++||+.+++. +..+.+|.
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---------------------------~~~~~~~~------- 107 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------------------------LKTLKGHS------- 107 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECCS-------
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE---------------------------EEEEcCCC-------
Confidence 45888999999999999999999999999999886653 57788898
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++| +|++.+|++++.|+.|++||+.+++....
T Consensus 108 -----~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------------------ 144 (312)
T 4ery_A 108 -----NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKT------------------------------------ 144 (312)
T ss_dssp -----SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEEEE------------------------------------
T ss_pred -----CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEEEE------------------------------------
Confidence 88999999 57899999999999999999998765433
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+..|...|.+++|+|++++|+++ .|+.|++||+++.. ....+ ...+...+.+++|+|++ .
T Consensus 145 -----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~------~~~~~~~~~~~~~~~~~-~ 205 (312)
T 4ery_A 145 -----------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTL------IDDDNPPVSFVKFSPNG-K 205 (312)
T ss_dssp -----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEE------CCSSCCCEEEEEECTTS-S
T ss_pred -----------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEE------eccCCCceEEEEECCCC-C
Confidence 36789999999999999999999 99999999999544 33322 24566789999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
+|++++.|+.|++||+++++.. ..+..|... ...+......+++.+|++|+ |+.|++||+.+ ++
T Consensus 206 ~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~ 270 (312)
T 4ery_A 206 YILAATLDNTLKLWDYSKGKCL----KTYTGHKNE----------KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KE 270 (312)
T ss_dssp EEEEEETTTEEEEEETTTTEEE----EEECSSCCS----------SSCCCEEEECSSSCEEEECCTTSCEEEEETTT-CC
T ss_pred EEEEEcCCCeEEEEECCCCcEE----EEEEecCCc----------eEEEEEEEEeCCCcEEEEECCCCEEEEEECCC-ch
Confidence 9999999999999999988654 555553110 11223333446788999986 59999999987 88
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeC
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG 400 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~ 400 (487)
.+..+.+|...+ .+++|+|++++|++++ .|+.|++|+..
T Consensus 271 ~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 271 IVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEecCC
Confidence 889999888754 6999999999999987 69999999864
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-33 Score=268.20 Aligned_cols=285 Identities=15% Similarity=0.202 Sum_probs=219.1
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
..+....|+|++++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~h~----------- 139 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ---------------------------REIDQAHV----------- 139 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE---------------------------EEETTSSS-----------
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce---------------------------eeeccccc-----------
Confidence 4566668899999999999999999999876643 46677898
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..|.+++| +|++++|++++.|+.|++||+.+++....
T Consensus 140 -~~v~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---------------------------------------- 176 (420)
T 3vl1_A 140 -SEITKLKF--FPSGEALISSSQDMQLKIWSVKDGSNPRT---------------------------------------- 176 (420)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCCCEE----------------------------------------
T ss_pred -CccEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCceE----------------------------------------
Confidence 89999999 57899999999999999999998764433
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE------------
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA------------ 259 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v------------ 259 (487)
+.+|...|.+++|+|++++|+++ .|+.|++||++++ .....+.. ...+...+.++
T Consensus 177 -------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~ 244 (420)
T 3vl1_A 177 -------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIHTFNR----KENPHDGVNSIALFVGTDRQLHE 244 (420)
T ss_dssp -------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECB----TTBTTCCEEEEEEEECCCSSCGG
T ss_pred -------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeEEeec----CCCCCCCccEEEEecCCcceeee
Confidence 36899999999999999999999 9999999999944 44444321 12344444444
Q ss_pred ---------EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEE
Q 011368 260 ---------EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL 329 (487)
Q Consensus 260 ---------~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~ 329 (487)
+|+|++ .+|++++.||.|++||+++++.. ..+.. .|...|.+++|+|++. +|+
T Consensus 245 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 245 ISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLPS------------KFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp GCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEECC------------TTSSCEEEEEECSSCTTEEE
T ss_pred cccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEccc------------ccCCCceeEEEeCCCCCEEE
Confidence 456888 89999999999999999987643 22221 3467899999999999 888
Q ss_pred EEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc----
Q 011368 330 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---- 404 (487)
Q Consensus 330 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~---- 404 (487)
+|+ ||.|++||+++...++..+..|.... +..+ +.+++++|++++.||.|++|++.....
T Consensus 308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 372 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGALFVSSGFDTSIKLDIISDPESERPA 372 (420)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCE
T ss_pred EEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccc
Confidence 886 59999999997555677777643321 1355 556888999999999999999987422
Q ss_pred ----eeEEEeccCCccccceEeeCCc--cccccccceeeecccce-ecCCC
Q 011368 405 ----GGITVEAGKNENRKPILQAAPR--ARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 405 ----~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
....+..|...+..++|+|... +.+ +++| .++. .+|+.
T Consensus 373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-----~a~g-~~g~~~~~~~ 417 (420)
T 3vl1_A 373 IEFETPTFLVSNDDAVSQFCYVSDDESNGEV-----LEVG-KNNFCALYNL 417 (420)
T ss_dssp ECTTSCEEECCSSCCCCEEEEECCSSSSCEE-----EEEE-TTTEEEEEES
T ss_pred eeccCccEEccCCcceEEEEEccCCCCcceE-----EEEc-CCceEEEEec
Confidence 2445678899999999999422 123 4555 4455 77744
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-33 Score=292.05 Aligned_cols=365 Identities=13% Similarity=0.131 Sum_probs=271.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|..+|++++|+|++++|++|+.||.|+|||+.+++. ...+.+|.
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---------------------------~~~~~~~~-------- 97 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK---------------------------VVDFEAHP-------- 97 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE---------------------------EEEEECCS--------
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEecCC--------
Confidence 4889999999999999999999999999999887754 57788898
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+.|.+++| +|++.+|++++.|+.|++||+.++.............+.++.+.+.++..++.+..+... ..
T Consensus 98 ----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v----~v 167 (814)
T 3mkq_A 98 ----DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV----KV 167 (814)
T ss_dssp ----SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE----EE
T ss_pred ----CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE----EE
Confidence 89999999 578999999999999999999887433333334556688888887566666655544432 23
Q ss_pred eec--cceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 190 WTE--NMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 190 ~~~--~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
|+. ......+...+...+.+++|+| ++++|+++ .|+.|++||+.++ ..... +.+|...|.+++|+|+
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~-------~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT-------LEGHMSNVSFAVFHPT 239 (814)
T ss_dssp EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEE-------EECCSSCEEEEEECSS
T ss_pred EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEE-------EcCCCCCEEEEEEcCC
Confidence 432 3333344345568999999999 99999999 9999999999844 44432 4678899999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC--EEEEEeCCeEEEEeCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWDIR 342 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~d~~i~iwd~~ 342 (487)
+ .+|++++.||.|++||+.+++.. ..+.. |...+.+++|+|++. +++++.++.+.+|++.
T Consensus 240 ~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 240 L-PIIISGSEDGTLKIWNSSTYKVE----KTLNV-------------GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp S-SEEEEEETTSCEEEEETTTCSEE----EEECC-------------SSSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred C-CEEEEEeCCCeEEEEECCCCcEE----EEeec-------------CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 9 99999999999999999987644 44444 357899999999987 5777888899999986
Q ss_pred CCCceeeeeecccccccc-----------------cccccC-----------CCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368 343 MDSTPVATFKIHEHLRPK-----------------LCDLYN-----------NDSIFDKFECSVSGDGLHFATGSYSNLL 394 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~s~d~~~l~sg~~dg~i 394 (487)
. ..+...+......+.. ...... ......+.+++|+|+|++|++++ |+.+
T Consensus 302 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~ 379 (814)
T 3mkq_A 302 N-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEY 379 (814)
T ss_dssp C-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEE
T ss_pred C-CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEE
Confidence 5 3322222111000000 000000 00111236999999999999988 8999
Q ss_pred EEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCC--
Q 011368 395 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTT-- 471 (487)
Q Consensus 395 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~-- 471 (487)
.+|++..... .+.+.+..++|+| +++. ++++..++. ++|+ ...++...|..++|+||+
T Consensus 380 ~i~~~~~~~~------~~~~~i~~~~~sp--dg~~-----la~~~~~g~v~l~~------~~~~~~~~v~~~~~s~dg~~ 440 (814)
T 3mkq_A 380 VIYTALAWRN------KAFGKCQDFVWGP--DSNS-----YALIDETGQIKYYK------NFKEVTSWSVPMHSAIDRLF 440 (814)
T ss_dssp EEEETTTTEE------EEEEECSEEEECT--TSSC-----EEEECTTCCEEEEE------TTEECTTCCCCCSSCCCEEE
T ss_pred EEEECccccc------cCCCceEEEEEeC--CCCe-----EEEEeCCCcEEEEE------CCCCccceEEcCCcCcccee
Confidence 9999864422 2345677889987 6777 899999998 9994 234566788899999998
Q ss_pred -CEEEEec-CCeEEEEe
Q 011368 472 -NLIACAN-GNSLFFHY 486 (487)
Q Consensus 472 -~~la~~s-~~~~~i~~ 486 (487)
..|++++ ++.+++|+
T Consensus 441 ~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 441 SGALLGVKSDGFVYFFD 457 (814)
T ss_dssp CSSSEEEEETTEEEEEC
T ss_pred cceEEEEecCCEEEEEE
Confidence 4666555 66799986
No 75
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=297.71 Aligned_cols=258 Identities=15% Similarity=0.203 Sum_probs=205.8
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
.+|.+.|++++|+|++++|++|+.||.|+||++.++ ..+....+.+|.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-------------------------~~~~~~~l~~h~------- 53 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHE------- 53 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-------------------------EEEEEEEECCCS-------
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-------------------------CCccceeccCCc-------
Confidence 468999999999999999999999999999998754 234567889998
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
+.|.+++|+|..++.+|++|+.||.|++||+.+++.....
T Consensus 54 -----~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~----------------------------------- 93 (753)
T 3jro_A 54 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA----------------------------------- 93 (753)
T ss_dssp -----SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE-----------------------------------
T ss_pred -----CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc-----------------------------------
Confidence 9999999964444899999999999999999987532221
Q ss_pred eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-- 263 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-- 263 (487)
.+.+|...|.+++|+|+ ++.+++| .|+.|++||++....... ..+.+|...|.+++|+|
T Consensus 94 ----------~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~------~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 94 ----------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------IIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp ----------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC------EEEECCSSCEEEEEECCCC
T ss_pred ----------cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce------eEeecCCCceEEEEecCcc
Confidence 13689999999999999 9999999 999999999986533221 12467889999999999
Q ss_pred -----------CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---CCEEE
Q 011368 264 -----------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLL 329 (487)
Q Consensus 264 -----------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~ 329 (487)
++ .++++++.||.|++||++++.........+. +|...|.+++|+|+ +++|+
T Consensus 158 ~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-------------~h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 158 IEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------------GHSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp ---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEEC-------------CCSSCEEEEEECCCCSSSEEEE
T ss_pred cccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeec-------------CCCCcEEEEEeccCCCCCCEEE
Confidence 46 8999999999999999998753222223333 45889999999999 89999
Q ss_pred EEe-CCeEEEEeCCCCCc----eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 330 SRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 330 s~~-d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
+++ ||.|++||++.... .......|...+ ++++|+|+|++|++|+.||.|++|++.++.
T Consensus 224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 986 69999999986321 122222233322 589999999999999999999999998653
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.2e-34 Score=289.05 Aligned_cols=260 Identities=19% Similarity=0.297 Sum_probs=205.7
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...|++++|+|++++|++|+.||+|+|||+.+++. ...+.+|.
T Consensus 426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~---------------------------~~~~~~h~------ 472 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS---------------------------TRRFVGHT------ 472 (694)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS------
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc---------------------------eeEEeCCC------
Confidence 456999999999999999999999999999999877653 57788998
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| ++++.+|++++.|++|++||...........
T Consensus 473 ------~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--------------------------------- 511 (694)
T 3dm0_A 473 ------KDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTISE--------------------------------- 511 (694)
T ss_dssp ------SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEECS---------------------------------
T ss_pred ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCCcceeecc---------------------------------
Confidence 89999999 5789999999999999999986543322210
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
...+|...|.+++|+|++ ..|+++ .|++|++||++.. .... .+.+|...|++++|+|+
T Consensus 512 -----------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~-------~~~~h~~~v~~v~~spd 572 (694)
T 3dm0_A 512 -----------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRS-------TLAGHTGYVSTVAVSPD 572 (694)
T ss_dssp -----------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEE-------EECCCSSCEEEEEECTT
T ss_pred -----------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEE-------EEcCCCCCEEEEEEeCC
Confidence 025789999999999986 578888 9999999999844 3433 35789999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 344 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~ 344 (487)
+ .+|++++.||.|++||+++++.+ ..+.. ...|.+++|+|++.+|+++.++.|++||+++
T Consensus 573 g-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~- 632 (694)
T 3dm0_A 573 G-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLCAATEHGIKIWDLES- 632 (694)
T ss_dssp S-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEEEEETTEEEEEETTT-
T ss_pred C-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEEEEcCCCEEEEECCC-
Confidence 9 99999999999999999988644 33333 3579999999999999999888899999987
Q ss_pred Cceeeeeecccccccccc----cccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 345 STPVATFKIHEHLRPKLC----DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+..+..+..+........ ..........+++++|+|||++|++|+.||.|+||++.
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 633 KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 777776654332110000 00001112234689999999999999999999999985
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=262.30 Aligned_cols=290 Identities=14% Similarity=0.141 Sum_probs=211.7
Q ss_pred ccccCcEEEEEEcCC---CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 29 LQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
..|.+.|++++|+|+ |++|++|+.||.|+|||+.+... .....+.+|.
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~---- 86 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------TIPKAQQMHT---- 86 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------EEEEEEEECS----
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------eeEEEecccc----
Confidence 458999999999999 69999999999999999986322 1236678888
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|.+++| ++++++|++++.|+.|++||+.+++....
T Consensus 87 --------~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--------------------------------- 123 (368)
T 3mmy_A 87 --------GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQI--------------------------------- 123 (368)
T ss_dssp --------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE---------------------------------
T ss_pred --------CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceee---------------------------------
Confidence 89999999 57899999999999999999998875543
Q ss_pred eeeeeeccceeeeecccCCCceeEEEe--CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISN--NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~--s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
..|...|.+++| +|++++|+++ .|+.|++||+++.. ....+ ..+ ..+.++.+.
T Consensus 124 ---------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~-------~~~-~~~~~~~~~ 179 (368)
T 3mmy_A 124 ---------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVL-------QLP-ERCYCADVI 179 (368)
T ss_dssp ---------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEE-------ECS-SCEEEEEEE
T ss_pred ---------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEE-------ecC-CCceEEEec
Confidence 578999999999 9999999999 99999999999544 33332 222 356666666
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE----EEEEe-CCeEE
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH----LLSRD-YMNLK 337 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~----l~s~~-d~~i~ 337 (487)
+ ..+++++.++.+++|+++...... ..... .+...+..+.+.++... +++++ ++.|+
T Consensus 180 ~---~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 241 (368)
T 3mmy_A 180 Y---PMAVVATAERGLIVYQLENQPSEF---RRIES------------PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVA 241 (368)
T ss_dssp T---TEEEEEEGGGCEEEEECSSSCEEE---EECCC------------SCSSCEEEEEEEECTTSCEEEEEEEETTSEEE
T ss_pred C---CeeEEEeCCCcEEEEEeccccchh---hhccc------------cccCCCceEEEcccCCCCCCeEEEecCCCcEE
Confidence 4 578889999999999998764321 11111 11234556666555443 77775 69999
Q ss_pred EEeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368 338 LWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 415 (487)
Q Consensus 338 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 415 (487)
+||++... ..+..+..|........... ....+++++|+|++++|++|+.||.|++||+.++ .....+..|..+
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~ 317 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQ---DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQP 317 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCE---EECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSC
T ss_pred EEecCCCCccccceeeeeeecccccccccc---cccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCCC
Confidence 99998622 45667777664210000000 0012369999999999999999999999999987 446666677776
Q ss_pred cccceEeeCCccccccccceeeecccce
Q 011368 416 NRKPILQAAPRARRSSLSNLTRGLYRQA 443 (487)
Q Consensus 416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~ 443 (487)
+..++|+| ++++ |++++.|+.
T Consensus 318 v~~~~~s~--~g~~-----l~~~s~d~~ 338 (368)
T 3mmy_A 318 ISACCFNH--NGNI-----FAYASSYDW 338 (368)
T ss_dssp EEEEEECT--TSSC-----EEEEECCCS
T ss_pred ceEEEECC--CCCe-----EEEEecccc
Confidence 66666666 4555 666665543
No 78
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=253.36 Aligned_cols=280 Identities=13% Similarity=0.181 Sum_probs=221.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
..++|+||+++ +||+| .|++|+|||+.+++.. ....+.+|.
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------------------~~~~~~~~~------------ 67 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 67 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 35789999886 77776 5999999999888642 122345666
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.+++| ++++++|++|+.|++|++||+.+++....
T Consensus 68 ~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~----------------------------------------- 104 (318)
T 4ggc_A 68 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN----------------------------------------- 104 (318)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------
T ss_pred CeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEE-----------------------------------------
Confidence 88999999 68899999999999999999999876544
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+.+|...+.++.+ ++..++++ .++.+++|+.......... +.+|...+.++.+++++ .+|+++
T Consensus 105 ------~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~l~s~ 168 (318)
T 4ggc_A 105 ------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWAPDG-RHLASG 168 (318)
T ss_dssp ------EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTS-SEEEEE
T ss_pred ------ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE-------EcCccCceEEEEEcCCC-CEEEEE
Confidence 2678888877655 56799999 9999999999866555443 46889999999999999 999999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE---EEe-CCeEEEEeCCCCCcee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL---SRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~---s~~-d~~i~iwd~~~~~~~~ 348 (487)
+.|+.|++||+++++.......... .+...|..+.++|++..++ +++ ++.|++||... ....
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~ 234 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFT-------------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACL 234 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEEC-------------CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEE
T ss_pred ecCcceeEEECCCCcccccceeeec-------------ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-cccc
Confidence 9999999999998764322222222 3467899999999876544 233 49999999986 5544
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 426 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 426 (487)
.....+... ..+.|+|+++.+++++ .|+.|+|||+.++ ....++.+|.++|++++|+| +
T Consensus 235 ~~~~~~~~v----------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~sp--d 295 (318)
T 4ggc_A 235 SAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSP--D 295 (318)
T ss_dssp EEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECT--T
T ss_pred ccccceeee----------------eeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcC--C
Confidence 444433321 5899999999887654 7999999999988 55789999999999999998 6
Q ss_pred cccccccceeeecccce-ecCCCC
Q 011368 427 ARRSSLSNLTRGLYRQA-HENSSS 449 (487)
Q Consensus 427 ~~~~~~~~l~~g~~~~~-~~w~~~ 449 (487)
+++ |++|+.|+. ++|+..
T Consensus 296 g~~-----l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 296 GAT-----VASAAADETLRLWRCF 314 (318)
T ss_dssp SSC-----EEEEETTTEEEEECCS
T ss_pred CCE-----EEEEecCCeEEEEECC
Confidence 777 999999999 999664
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-33 Score=265.42 Aligned_cols=250 Identities=15% Similarity=0.242 Sum_probs=199.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|...|++++|+|++++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~--------- 176 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK---------------------------LRTMAGHQ--------- 176 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS---------
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE---------------------------EEEecCCC---------
Confidence 788999999999999999999999999999877654 57788898
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|.+++|. +.+|++++.|+.|++||+.... ....
T Consensus 177 ---~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------------- 212 (401)
T 4aez_A 177 ---ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGT------------------------------------- 212 (401)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEE-------------------------------------
T ss_pred ---CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeE-------------------------------------
Confidence 899999993 4699999999999999998433 2221
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.+|...|.+++|+|++++|++| .|+.|++||+++.. ... .+..|...|.+++|+|++..+
T Consensus 213 ----------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~-------~~~~~~~~v~~~~~~p~~~~l 274 (401)
T 4aez_A 213 ----------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKF-------TKTNHNAAVKAVAWCPWQSNL 274 (401)
T ss_dssp ----------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEE-------EECCCSSCCCEEEECTTSTTE
T ss_pred ----------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccE-------EecCCcceEEEEEECCCCCCE
Confidence 36899999999999999999999 99999999999543 332 246788999999999987577
Q ss_pred EEEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE---eCCeEEEEeCCC
Q 011368 269 LAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DYMNLKLWDIRM 343 (487)
Q Consensus 269 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~---~d~~i~iwd~~~ 343 (487)
+++++ .|+.|++||+++++.. ..+.. ...|.+++|+|++++++++ .++.|++||+.+
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARV----NTVDA--------------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EEEecCCCCCEEEEEECCCCCEE----EEEeC--------------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 77765 7999999999987654 44443 4689999999999999984 269999999986
Q ss_pred CCceeee--eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368 344 DSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 344 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 412 (487)
+..... +.+|...+ ++++|+|++++|++++.||.|++|++.+++.....+..+
T Consensus 337 -~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 391 (401)
T 4aez_A 337 -SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPIT 391 (401)
T ss_dssp -TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC-----------
T ss_pred -ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccccccc
Confidence 444433 55666544 599999999999999999999999999886544433333
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.9e-33 Score=265.94 Aligned_cols=247 Identities=19% Similarity=0.278 Sum_probs=206.6
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|+||+|+|+|++||+|+.||.|+|||+.+++. +..+.+|.
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~---------------------------~~~~~~h~------- 189 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---------------------------LRNMTSHS------- 189 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-------
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE---------------------------EEEEeCCC-------
Confidence 35788899999999999999999999999999987654 57889998
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++|. +.+|++++.|+.+++||.........
T Consensus 190 -----~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~------------------------------------ 224 (420)
T 4gga_A 190 -----ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVA------------------------------------ 224 (420)
T ss_dssp -----SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEE------------------------------------
T ss_pred -----CceEEEeeC----CCEEEEEeCCCceeEeeecccceeeE------------------------------------
Confidence 889998883 57999999999999999876542211
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
.+.+|...+..+.++|++++++++ .|+.+++|+...+...... ......|...|.+++|+|.+..
T Consensus 225 ----------~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 225 ----------TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp ----------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSSCEEEEEECTTCTT
T ss_pred ----------EecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCCceeeeeeCCCccc
Confidence 137899999999999999999999 9999999999855432111 1134678899999999998867
Q ss_pred EEEEE--eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---CCeEEEEeCC
Q 011368 268 LLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIR 342 (487)
Q Consensus 268 ~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---d~~i~iwd~~ 342 (487)
+++++ +.|+.|++||+++++.. ..+.. ...+.++.|+|+++.+++++ |+.|+|||+.
T Consensus 291 ~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 291 VLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp EEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred EEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 77765 46999999999998754 44444 36789999999999988753 5999999999
Q ss_pred CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+ ++++..+.+|...+ ++++|+|||++|++|+.|++|+|||+.+.
T Consensus 353 ~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 353 T-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp T-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred C-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7 88999999998765 69999999999999999999999999865
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-32 Score=264.69 Aligned_cols=272 Identities=12% Similarity=0.194 Sum_probs=225.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|...|+|++| ++++|++|+.||.|++||..+++. ...+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~---------------------------~~~~~~h~-------- 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------------KRILTGHT-------- 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------------EEEECCCS--------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE---------------------------EEEEcCCC--------
Confidence 35677999887 789999999999999999887654 57788998
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+.|.+++| ++.+|++|+.||+|++||+.+++....
T Consensus 174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~------------------------------------- 208 (435)
T 1p22_A 174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT------------------------------------- 208 (435)
T ss_dssp ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-------------------------------------
T ss_pred ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-------------------------------------
Confidence 88999998 578999999999999999998875543
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.+|...|.+++|++ ..+++| .|+.|++||+.+....... ..+.+|...|.+++| ++ .+
T Consensus 209 ----------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~v~~~~~--~~-~~ 268 (435)
T 1p22_A 209 ----------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNVVDF--DD-KY 268 (435)
T ss_dssp ----------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSSCEEEEEE--ET-TE
T ss_pred ----------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-----eEecCCCCcEEEEEe--CC-CE
Confidence 368999999999974 588888 9999999999855432211 135689999999999 55 89
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
+++++.||.|++||+++++.. ..+.. |...|.++.++ +.++++|+ |+.|++||+++ +.+
T Consensus 269 l~s~~~dg~i~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~-~~~ 328 (435)
T 1p22_A 269 IVSASGDRTIKVWNTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GAC 328 (435)
T ss_dssp EEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCE
T ss_pred EEEEeCCCeEEEEECCcCcEE----EEEcC-------------CCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC-CCE
Confidence 999999999999999987654 55555 47789999984 67888876 69999999997 888
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc--------eeEEEeccCCccccc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------GGITVEAGKNENRKP 419 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~ 419 (487)
+..+.+|...+ .+++| ++++|++|+.||.|++||+.++.. ....+.+|..+|.++
T Consensus 329 ~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 329 LRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp EEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred EEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 89998888754 57777 789999999999999999986541 578889999999999
Q ss_pred eEeeCCccccccccceeeecccce-ecCCCC
Q 011368 420 ILQAAPRARRSSLSNLTRGLYRQA-HENSSS 449 (487)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~ 449 (487)
++ ++.. +++|+.|+. ++|+..
T Consensus 392 ~~----~~~~-----l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 392 QF----DEFQ-----IVSSSHDDTILIWDFL 413 (435)
T ss_dssp EE----CSSC-----EEECCSSSEEEEEC--
T ss_pred Ee----CCCE-----EEEEeCCCEEEEEECC
Confidence 98 3455 899999999 999654
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.3e-33 Score=261.14 Aligned_cols=255 Identities=12% Similarity=0.106 Sum_probs=191.0
Q ss_pred cccCcEEEEEEcCCCCEEEEE-----------ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec
Q 011368 30 QDVDIVSAIEFDKTGDYLAVG-----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ 98 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g-----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (487)
.|.+.|.+++++ ++.+++| +.|+.+++|++.+.+. ..+......
T Consensus 71 ~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-----------------------~~~~~~~~~ 125 (365)
T 4h5i_A 71 DNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVND-----------------------QLEFLTSVD 125 (365)
T ss_dssp TTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-----------------------EEEEEEEEC
T ss_pred CCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCc-----------------------eEEEeeeec
Confidence 467778888765 4566665 4577899999887643 111222221
Q ss_pred CCCcccccccccccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccc
Q 011368 99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (487)
Q Consensus 99 ~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (487)
... ....+..+.+++| +|||+++++++ .|++|+|||+.+++....
T Consensus 126 ~~~-------~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~~~~~~~------------------------ 172 (365)
T 4h5i_A 126 FDA-------STNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSDLTEKFE------------------------ 172 (365)
T ss_dssp SSC-------CCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTTTEEEEE------------------------
T ss_pred eee-------cCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCCCcEEEE------------------------
Confidence 111 0111266889999 68999987654 789999999998876543
Q ss_pred cCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368 177 HNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 256 (487)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 256 (487)
..|...|++++|+|||++++++.++.+.+|+..++...... ....|...|
T Consensus 173 ------------------------~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~------~~~~~~~~v 222 (365)
T 4h5i_A 173 ------------------------IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARK------TDFDKNWSL 222 (365)
T ss_dssp ------------------------EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEE------CCCCTTEEE
T ss_pred ------------------------eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeee------ecCCCCCCE
Confidence 35778899999999999999995556677777645543332 346788899
Q ss_pred EEEEEecCCCCEEEEEeCCC----eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 257 TSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
.+++|+|++ ..+++++.|+ .+++|++............+ .+|...|++++|+|||++||+|+
T Consensus 223 ~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 223 SKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV-------------TNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp EEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE-------------ESSCSCEEEEEECTTSCEEEEEE
T ss_pred EEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeee-------------cCCCCCeEeEEECCCCCceEEEc
Confidence 999999999 9999998877 68889988764321111223 34578999999999999999986
Q ss_pred -CCeEEEEeCCCCCceeeee-ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 333 -YMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 333 -d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
|++|+|||+++ ++++..+ .+|...+ ++++|||||++||+||.|++|+||++...
T Consensus 289 ~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 289 NDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 59999999997 7887764 7888765 69999999999999999999999999754
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.2e-32 Score=251.82 Aligned_cols=254 Identities=19% Similarity=0.270 Sum_probs=199.5
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|++++|+|+|++|++|+.|+.|++|+...... ......+.
T Consensus 83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~---------------------------~~~~~~~~------- 128 (340)
T 4aow_A 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT---------------------------TRRFVGHT------- 128 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce---------------------------eeeecCCC-------
Confidence 45889999999999999999999999999999776543 34445555
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..+..+.+ .+++.+|++++.|+.+++||+........
T Consensus 129 -----~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~~~~~------------------------------------ 165 (340)
T 4aow_A 129 -----KDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVCKYTV------------------------------------ 165 (340)
T ss_dssp -----SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEE------------------------------------
T ss_pred -----CceeEEEE--eecCccceeecCCCeEEEEEeCCCceEEE------------------------------------
Confidence 66778888 57889999999999999999876543322
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
...+|...+.+++|++++ .+++++ .|+.|++||++.. .... .+.+|...|++++|+|++
T Consensus 166 ----------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~-------~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 166 ----------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKT-------NHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp ----------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEE-------EECCCSSCEEEEEECTTS
T ss_pred ----------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceee-------EecCCCCcEEEEEECCCC
Confidence 136889999999998764 567788 9999999999944 4433 346899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 345 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~ 345 (487)
++|++++.||.|++||+++.+.+ ..+.. ...+.++.|+|++.+++++.|+.|++||++. .
T Consensus 228 -~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~-~ 287 (340)
T 4aow_A 228 -SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLCAATGPSIKIWDLEG-K 287 (340)
T ss_dssp -SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEEEEETTEEEEEETTT-T
T ss_pred -CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceeeccCCCEEEEEECCC-C
Confidence 99999999999999999987654 44544 3679999999999888888899999999986 6
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
..+..+..+...... ..+.. .|++++|+|||++|++|+.||.|+|||+++|.
T Consensus 288 ~~~~~~~~~~~~~~~---~~h~~---~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 288 IIVDELKQEVISTSS---KAEPP---QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECCC----------CCCC---CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eEEEeccccceeeec---cCCCC---CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 666555432211000 00111 23699999999999999999999999999883
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.8e-33 Score=258.62 Aligned_cols=250 Identities=15% Similarity=0.115 Sum_probs=185.9
Q ss_pred eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (487)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
..+.+|. +.|.+++| ++++++|++|+.|++|++||+.++.....
T Consensus 7 ~~~~~H~------------~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~~~---------------------- 50 (316)
T 3bg1_A 7 TVDTSHE------------DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQILI---------------------- 50 (316)
T ss_dssp -------------------CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEEEE----------------------
T ss_pred eeccccc------------CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcEEE----------------------
Confidence 3466888 99999999 57899999999999999999987643211
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCC-ceeEEeecCCCCCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMD 250 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~ 250 (487)
.. +.+|...|++++|+| ++++|++| .|++|++||++++. .... .+.
T Consensus 51 ----------------------~~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------~~~ 100 (316)
T 3bg1_A 51 ----------------------AD-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------EHA 100 (316)
T ss_dssp ----------------------EE-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE-------EEC
T ss_pred ----------------------EE-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE-------Ecc
Confidence 11 378999999999986 48999999 99999999998543 1221 356
Q ss_pred CCCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC----
Q 011368 251 DLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---- 324 (487)
Q Consensus 251 ~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---- 324 (487)
+|...|.+++|+|+ + .+|++++.|+.|++||++.+.... .... +.+|...|.+++|+|+
T Consensus 101 ~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~-~~~~-------------~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 101 GHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWE-VKKI-------------NNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp CCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEE-ECCB-------------TTSSSSCBCCCEECCCCCC-
T ss_pred CCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcc-eeee-------------eccccCCcceEEEccccCCc
Confidence 89999999999998 6 899999999999999998753110 0022 2345788999999997
Q ss_pred -------------CCEEEEEe-CCeEEEEeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCC----CE
Q 011368 325 -------------GQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LH 384 (487)
Q Consensus 325 -------------~~~l~s~~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~----~~ 384 (487)
+++|++|+ |+.|++||++... .++..+.+|...+ ++++|+|++ ++
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------RDVAWAPSIGLPTST 230 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------EEEECCCCSSCSCCE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------EEEEecCCCCCCCce
Confidence 46888876 6999999997522 3566778887754 699999986 89
Q ss_pred EEEEcCCCcEEEEEeCCCC---ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCC
Q 011368 385 FATGSYSNLLRIFSHGVGS---AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 447 (487)
Q Consensus 385 l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~ 447 (487)
|++|+.|++|+||++.+.. .....+..|...+..++|+| ++.. |++++.|+. ++|+
T Consensus 231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~-----las~~~D~~v~lw~ 290 (316)
T 3bg1_A 231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI--TANI-----LAVSGGDNKVTLWK 290 (316)
T ss_dssp EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT--TTCC-----EEEEESSSCEEEEE
T ss_pred EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC--CCCE-----EEEEcCCCeEEEEE
Confidence 9999999999999998631 12334556666666666666 4455 666666666 6663
No 85
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.3e-32 Score=264.49 Aligned_cols=294 Identities=15% Similarity=0.185 Sum_probs=222.9
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|.+.|++++|+|++ +|++|+.||+|++||+.+++. ...+.+|.
T Consensus 160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~---------------------------~~~~~~h~-------- 203 (464)
T 3v7d_B 160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC---------------------------THVFEGHN-------- 203 (464)
T ss_dssp CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS--------
T ss_pred CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE---------------------------EEEECCCC--------
Confidence 589999999999988 999999999999999887653 57788998
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|.+++|++.+++.++++++.|++|++||+.++.............. . +..+..
T Consensus 204 ----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~-~~~~~~------------------ 258 (464)
T 3v7d_B 204 ----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--V-FHTPEE------------------ 258 (464)
T ss_dssp ----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE--E-ESCGGG------------------
T ss_pred ----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce--E-eeccCC------------------
Confidence 899999998878889999999999999999987754432111110000 0 000000
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
...... .+.+|...|.++ ++++++++++ .|+.|++||+.+ ...... +.+|...|.+++|+|++ .+
T Consensus 259 --~~~~~~-~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~-------~~~~~~~v~~~~~~~~~-~~ 324 (464)
T 3v7d_B 259 --NPYFVG-VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ-MKCLYI-------LSGHTDRIYSTIYDHER-KR 324 (464)
T ss_dssp --CTTEEE-EECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTT-TEEEEE-------ECCCSSCEEEEEEETTT-TE
T ss_pred --CeEEEE-EccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCC-CcEEEE-------ecCCCCCEEEEEEcCCC-CE
Confidence 000111 237888888887 5678999999 999999999984 444432 46789999999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
+++++.||.|++||+++++.. ..+.. |...|.++.|+ +.+|++++ ||.|++||+.+ ...
T Consensus 325 l~sg~~dg~i~vwd~~~~~~~----~~~~~-------------h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~ 384 (464)
T 3v7d_B 325 CISASMDTTIRIWDLENGELM----YTLQG-------------HTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSR 384 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCE
T ss_pred EEEEeCCCcEEEEECCCCcEE----EEEeC-------------CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cce
Confidence 999999999999999988754 55555 47899999998 47888875 69999999986 444
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 427 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 427 (487)
..... +.... ..++|+|++++|++|+ ||.|++||+.+++.....+..|...+.+++++ +.
T Consensus 385 ~~~~~-~~~~~---------------~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~---~~ 444 (464)
T 3v7d_B 385 KFSYH-HTNLS---------------AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK---GK 444 (464)
T ss_dssp EEEEE-CTTCC---------------CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE---TT
T ss_pred eeeec-CCCCc---------------cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec---CC
Confidence 44443 22211 3789999999999998 89999999999865544577889999999996 33
Q ss_pred ccccccceeeecccce
Q 011368 428 RRSSLSNLTRGLYRQA 443 (487)
Q Consensus 428 ~~~~~~~l~~g~~~~~ 443 (487)
.+ +++++.++.
T Consensus 445 ~l-----~~~~~~~g~ 455 (464)
T 3v7d_B 445 TL-----VAAVEKDGQ 455 (464)
T ss_dssp EE-----EEEEEETTE
T ss_pred EE-----EEEEEeCCe
Confidence 33 566666665
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-33 Score=264.69 Aligned_cols=263 Identities=14% Similarity=0.183 Sum_probs=202.7
Q ss_pred ccCcEEEEEEcCC----CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 31 DVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 31 h~~~V~~~~~s~~----~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
|...|++++|+|+ +++|++|+.||.|++||+.+++. +..+.+|.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---------------------------~~~~~~~~----- 115 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC---------------------------IKHYVGHG----- 115 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE---------------------------EEEEESCC-----
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE---------------------------eeeecCCC-----
Confidence 6678999999999 67999999999999999886653 57788898
Q ss_pred ccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|.+++|+ | ++.+|++++.|+.|++||+.+++......
T Consensus 116 -------~~i~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------- 155 (366)
T 3k26_A 116 -------NAINELKFH--PRDPNLLLSVSKDHALRLWNIQTDTLVAIFG------------------------------- 155 (366)
T ss_dssp -------SCEEEEEEC--SSCTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred -------CcEEEEEEC--CCCCCEEEEEeCCCeEEEEEeecCeEEEEec-------------------------------
Confidence 899999994 6 78999999999999999999876554310
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeec--------------------
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM-------------------- 244 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~-------------------- 244 (487)
.+.+|...|.+++|+|++++|+++ .|+.|++||+++... ...+..
T Consensus 156 -------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 156 -------------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM-MNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp -------------STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHH-HHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred -------------ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcc-ccccceeEEecCCCCcccccceeecc
Confidence 015789999999999999999999 999999999984322 110000
Q ss_pred -CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368 245 -KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 323 (487)
Q Consensus 245 -~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~ 323 (487)
.......|...|.+++|+ + .+|++++.|+.|++||++++.... ..+..+.........+..|...|.+++|+|
T Consensus 222 ~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVTILGRFDYSQCDIWYMRFSM 295 (366)
T ss_dssp CSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred CccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccCCcchheeccccccCCcEEEEEEcC
Confidence 001223488999999999 5 799999999999999998865321 111111111122233556788999999999
Q ss_pred C--CCEEEEEe-CCeEEEEeCCCCCce----eeeeecc--cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368 324 D--GQHLLSRD-YMNLKLWDIRMDSTP----VATFKIH--EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 394 (487)
Q Consensus 324 ~--~~~l~s~~-d~~i~iwd~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i 394 (487)
+ +++|++++ ||.|++||+.. +.+ ...+..| ... |++++|+|++++|++++.||.|
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAA---------------IRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSC---------------EEEEEECTTSSEEEEEETTSEE
T ss_pred CCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCc---------------eEEEEeCCCCCeEEEEeCCCEE
Confidence 9 99999986 59999999986 443 3356666 232 2699999999999999999999
Q ss_pred EEEEeCC
Q 011368 395 RIFSHGV 401 (487)
Q Consensus 395 ~iwd~~~ 401 (487)
++||+.+
T Consensus 360 ~iwd~~~ 366 (366)
T 3k26_A 360 WRWDRLR 366 (366)
T ss_dssp EEEEC--
T ss_pred EEEEecC
Confidence 9999853
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=260.68 Aligned_cols=312 Identities=15% Similarity=0.211 Sum_probs=220.2
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
...+.+|. +.|.+++| +| ++++|++++.||.|++||+.++............
T Consensus 36 ~~~~~~h~------------~~v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------------- 88 (408)
T 4a11_B 36 RDVERIHG------------GGINTLDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC------------- 88 (408)
T ss_dssp EEECCCCS------------SCEEEEEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE-------------
T ss_pred eeeeeccC------------CcEEEEEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc-------------
Confidence 46778898 99999999 57 8999999999999999999887543321100000
Q ss_pred cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368 173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 250 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 250 (487)
........+|...|.+++|+| ++++|+++ .|+.|++||+.+ ......+
T Consensus 89 ---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~-------- 138 (408)
T 4a11_B 89 ---------------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVF-------- 138 (408)
T ss_dssp ---------------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT-TEEEEEE--------
T ss_pred ---------------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-Cccceec--------
Confidence 000000246999999999999 78899998 999999999994 4444332
Q ss_pred CCCCcEEEEEEecCCC--CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-
Q 011368 251 DLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH- 327 (487)
Q Consensus 251 ~~~~~v~~v~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~- 327 (487)
.+...+.++.|+|.++ .++++++.|+.|++||+++++.. ..+.. |...|.+++|+|++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----HILQG-------------HRQEILAVSWSPRYDYI 201 (408)
T ss_dssp ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----EEECC-------------CCSCEEEEEECSSCTTE
T ss_pred cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----eeecC-------------CCCcEEEEEECCCCCcE
Confidence 3567789999998541 49999999999999999987644 45555 4789999999999984
Q ss_pred EEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368 328 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 406 (487)
Q Consensus 328 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~ 406 (487)
+++++ |+.|++||++.....+..+..+..................+++++|+|++++|++++.||.|++||+.+++...
T Consensus 202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce
Confidence 77775 59999999987554666654333211110000000111124699999999999999999999999999875432
Q ss_pred EEEecc--CCcccc--ceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368 407 ITVEAG--KNENRK--PILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 479 (487)
Q Consensus 407 ~~~~~~--~~~v~~--~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~ 479 (487)
.+..+ ...... ...... .... ++.++.++. .+| ..++......+|...|.+++|+|++++|++++.
T Consensus 282 -~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 354 (408)
T 4a11_B 282 -VNYGKVCNNSKKGLKFTVSCG-CSSE-----FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR 354 (408)
T ss_dssp -CCCCCCCCCCSSCCCCEECCS-SSSC-----EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred -eccccccccccccceeEEecC-CCce-----EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC
Confidence 22111 111111 222221 1122 666777777 999 445556666789999999999999999999996
Q ss_pred Ce-EEEEe
Q 011368 480 NS-LFFHY 486 (487)
Q Consensus 480 ~~-~~i~~ 486 (487)
|+ +++|+
T Consensus 355 dg~i~iw~ 362 (408)
T 4a11_B 355 DCNILAWV 362 (408)
T ss_dssp TSCEEEEE
T ss_pred CCeEEEEe
Confidence 65 99996
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-32 Score=258.92 Aligned_cols=253 Identities=12% Similarity=0.141 Sum_probs=201.4
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|...|++++|+|++++|++|+.||.|++||+.+++. .....+..|.
T Consensus 50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------~~~~~~~~~~-------- 96 (372)
T 1k8k_C 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------KPTLVILRIN-------- 96 (372)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------EEEEECCCCS--------
T ss_pred CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------eeeEEeecCC--------
Confidence 5889999999999999999999999999999987742 1234456677
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..|.+++| ++++.+|++++.|+.|++||+..+.....
T Consensus 97 ----~~v~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~~~~~------------------------------------- 133 (372)
T 1k8k_C 97 ----RAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWV------------------------------------- 133 (372)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEE-------------------------------------
T ss_pred ----CceeEEEE--CCCCCEEEEEeCCCEEEEEEecCCCccee-------------------------------------
Confidence 88999999 57899999999999999999987753211
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccC-----------------CCceeEEeecCCCCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQCFNIVDMKPSNMDD 251 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~ 251 (487)
...+..+|...|.+++|+|++++|+++ .|+.|++||++. .+.... .+.+
T Consensus 134 ------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 200 (372)
T 1k8k_C 134 ------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-------ESSS 200 (372)
T ss_dssp ------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-------ECCC
T ss_pred ------eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE-------ecCC
Confidence 011136789999999999999999999 999999999642 223332 3567
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368 252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 331 (487)
Q Consensus 252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 331 (487)
|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+.. |...|.+++|+|++++|+++
T Consensus 201 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 201 SCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----ATLAS-------------ETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp CSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EEEEC-------------SSCCEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcee----EEEcc-------------CCCCeEEEEEecCCCEEEEE
Confidence 88999999999999 99999999999999999987654 55555 36789999999999999999
Q ss_pred eCCeEEEEeCCCC-C--ceeee------------------------------------e-ecccccccccccccCCCCcc
Q 011368 332 DYMNLKLWDIRMD-S--TPVAT------------------------------------F-KIHEHLRPKLCDLYNNDSIF 371 (487)
Q Consensus 332 ~d~~i~iwd~~~~-~--~~~~~------------------------------------~-~~~~~~~~~~~~~~~~~~~~ 371 (487)
.|+.|++|++... + ..+.. + .+|..
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------------- 327 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN--------------- 327 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS---------------
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC---------------
Confidence 8899999999751 1 11111 1 12332
Q ss_pred eeeEEEEc-CCC---CEEEEEcCCCcEEEEEeCCCCc
Q 011368 372 DKFECSVS-GDG---LHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 372 ~~~~~~~s-~d~---~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
.|++++|+ ++| ++|++|+.||.|++|++.+++.
T Consensus 328 ~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 328 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred CcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 23689866 677 9999999999999999987643
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=273.20 Aligned_cols=297 Identities=10% Similarity=0.052 Sum_probs=206.9
Q ss_pred cccCcEEEEEEcCC------CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368 30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (487)
Q Consensus 30 ~h~~~V~~~~~s~~------~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (487)
.|.+.|++++|+|+ +.+||+|+.||+|+|||+.+++..... . ....+....+.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~-----~-----------~~~~~p~~~l~~h~-- 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV-----F-----------KMCEKPSLTLSLAD-- 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE-----E-----------ECCCSCSEEECCTT--
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc-----c-----------eeecCceEEEEcCC--
Confidence 45788999999997 579999999999999999876431000 0 00011234678888
Q ss_pred cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|.+++|+ ++ ..|++|+.||+|++||+.++.....
T Consensus 267 ----------~~v~sv~~s--~~-~~lasgs~DgtV~lWD~~~~~~~~~------------------------------- 302 (524)
T 2j04_B 267 ----------SLITTFDFL--SP-TTVVCGFKNGFVAEFDLTDPEVPSF------------------------------- 302 (524)
T ss_dssp ----------TCEEEEEES--SS-SEEEEEETTSEEEEEETTBCSSCSE-------------------------------
T ss_pred ----------CCEEEEEec--CC-CeEEEEeCCCEEEEEECCCCCCceE-------------------------------
Confidence 899999995 43 4899999999999999986532110
Q ss_pred eeeeeeeeccceeeeecccCCCceeEE--EeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC--CcEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSI--SNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EVIT 257 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~ 257 (487)
.+.+|...|+++ +|+|++ ++|++| .|++|++||+++... ... +.+|. ..|.
T Consensus 303 ---------------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~-------~~~~~~~~~v~ 359 (524)
T 2j04_B 303 ---------------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKT-------TVSRFRGSNLV 359 (524)
T ss_dssp ---------------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCE-------EEEECSCCSCC
T ss_pred ---------------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccc-------cccccccCccc
Confidence 137899999999 578887 899999 999999999985432 221 22343 2478
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeE
Q 011368 258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 336 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i 336 (487)
+++|+|++ ..+++++.|+.|++||++++... ..+.+ |...|++++|+|+|++|++|+ |++|
T Consensus 360 ~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~----~~l~g-------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 360 PVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV----HPLVS-------------RETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp CEEEETTT-TEEEEECSSSEEEEEETTCTTCC----EEEEE-------------CSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred ceEeCCCc-CeEEEeCCCCcEEEEECcccccc----eeeec-------------CCCceEEEEeCCCCCeEEEEECCCEE
Confidence 99999998 89999999999999999987643 44445 578999999999999999986 5999
Q ss_pred EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
++||+.. +.+...+...... ....+++++|+|+++.+. ...+ +.+|+....+.....+.+|..+|
T Consensus 422 ~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V 486 (524)
T 2j04_B 422 IITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINI 486 (524)
T ss_dssp ECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSC
T ss_pred EEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceE
Confidence 9999864 2322221111000 001125899999998553 3322 33444432234677899999999
Q ss_pred ccceEeeCCc-cccccccceeeecccce-ecCCCC
Q 011368 417 RKPILQAAPR-ARRSSLSNLTRGLYRQA-HENSSS 449 (487)
Q Consensus 417 ~~~~~~~~~~-~~~~~~~~l~~g~~~~~-~~w~~~ 449 (487)
.+++|+|..+ +.. +++|+.++. ++|...
T Consensus 487 ~~Vafsp~~~~~~~-----lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 487 TCTKWNETSAGGKC-----YAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCEEECCSTTTTTE-----EEEECTTSEEEEEECS
T ss_pred EEEECCCCCCccHH-----HHhhccCceEEEEEcc
Confidence 9999999643 456 999999999 999553
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-32 Score=258.60 Aligned_cols=293 Identities=14% Similarity=0.187 Sum_probs=204.8
Q ss_pred cccccCcEEEEEEcCC----C---CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC
Q 011368 28 ELQDVDIVSAIEFDKT----G---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~----~---~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (487)
...|...|++++|+|+ + ++|++++.||.|++|++.+++.. .......+.+|
T Consensus 58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~ 115 (397)
T 1sq9_A 58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET----------------------KKVIFEKLDLL 115 (397)
T ss_dssp EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------------------CCEEEEEECCS
T ss_pred EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------------------ccccceeeccc
Confidence 3458899999999999 9 99999999999999999887631 11224666777
Q ss_pred CcccccccccccccceeEEEEEec--CCCcE-EEEEeCCCcEEEEEccc------cceeEeeecCCCCceeeeecccccc
Q 011368 101 EPEFDYLKSLEIEEKINRVRWCAA--PNGSM-FILSTNDKTIKLWKVRD------QKVKKIKEMDHFPFVSSENTLLAEK 171 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~I~~v~~~~~--~~~~~-l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (487)
.... . ...|.+++|++. +++.+ |++++.|+.|++||+.. ++......
T Consensus 116 ~~~~---~----~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------- 171 (397)
T 1sq9_A 116 DSDM---K----KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP----------------- 171 (397)
T ss_dssp CTTG---G----GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC-----------------
T ss_pred cccc---C----CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC-----------------
Confidence 2000 0 178999999522 67889 99999999999999987 44322000
Q ss_pred ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368 172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 250 (487)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 250 (487)
...+ .........|...|.+++|+|++ +|+++ .|+.|++||+++. ..... +.
T Consensus 172 ---------------~~~~---~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~-------~~ 224 (397)
T 1sq9_A 172 ---------------TLEL---QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYN-------FE 224 (397)
T ss_dssp ---------------EEEE---EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEE-------EE
T ss_pred ---------------ccee---eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEE-------Ee
Confidence 0000 00000014588899999999999 99999 9999999999854 44433 34
Q ss_pred C---C---CCcEEEEEEecCCCCEEEEEeCC---CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368 251 D---L---TEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 321 (487)
Q Consensus 251 ~---~---~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~ 321 (487)
. | ...|.+++|+|++ .+|++++.| +.|++||+++++.. ..+...............|...|.+++|
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE----EEECBC--------CCBSBSSCEEEEEE
T ss_pred ccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCccc----ceeccCcccccccccccccCCcEEEEEE
Confidence 4 7 8899999999999 999999999 99999999987644 4444300000000001115789999999
Q ss_pred cCCCCEEEEEe-CCeEEEEeCCCCCceeeeee------cccccccccc---cccCCCCcceeeEEEEcCCC---------
Q 011368 322 ANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK------IHEHLRPKLC---DLYNNDSIFDKFECSVSGDG--------- 382 (487)
Q Consensus 322 s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~s~d~--------- 382 (487)
+|++++|++++ |+.|++||+++ ++.+..+. .|......-. .-.+.. .|++++|+|++
T Consensus 300 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 300 NDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp CSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC---CEEEEEEECTTTSBSTTCTT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCC---ceeEEEeccccccccccccc
Confidence 99999999986 59999999987 78888888 5500000000 000011 23699999998
Q ss_pred -CEEEEEcCCCcEEEEEeCCC
Q 011368 383 -LHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 383 -~~l~sg~~dg~i~iwd~~~~ 402 (487)
++|++|+.||.|++|+++++
T Consensus 376 ~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCEEEEEETTTEEEEEEEEC-
T ss_pred cceEEEecCCCcEEEEEcCCC
Confidence 79999999999999999876
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.9e-32 Score=260.92 Aligned_cols=289 Identities=13% Similarity=0.126 Sum_probs=215.5
Q ss_pred cEEEEEEcCCCCEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 34 ~V~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
....++++|+...+ ++++.||.|+||++...... .+....+.+|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~----------- 81 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHT----------- 81 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCS-----------
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCC-----------
Confidence 34568899887544 45788999999998554210 11234578898
Q ss_pred ccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 113 EEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 113 ~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
+.|.+++| +| ++.+|++++.|++|++||+.++......
T Consensus 82 -~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~-------------------------------------- 120 (402)
T 2aq5_A 82 -APVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPL-------------------------------------- 120 (402)
T ss_dssp -SCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCB--------------------------------------
T ss_pred -CCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCcccc--------------------------------------
Confidence 99999999 46 7899999999999999999887432100
Q ss_pred ccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
..+... +.+|...|.+++|+|++ ++|+++ .|+.|++||++++ .....+ ...+|...|.+++|+|++ .+|
T Consensus 121 -~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l 191 (402)
T 2aq5_A 121 -REPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-AAVLTL-----GPDVHPDTIYSVDWSRDG-ALI 191 (402)
T ss_dssp -CSCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-EEEEEE-----CTTTCCSCEEEEEECTTS-SCE
T ss_pred -CCceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-CccEEE-----ecCCCCCceEEEEECCCC-CEE
Confidence 011112 37899999999999998 689998 9999999999954 443321 115789999999999999 999
Q ss_pred EEEeCCCeEEEEEccCCccccccceee-cccccccCcccccccccc-ceeEEEEcCCCCEEEEE----eCCeEEEEeCCC
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR----DYMNLKLWDIRM 343 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~s~----~d~~i~iwd~~~ 343 (487)
++++.||.|++||+++++.. ..+ ..| .. .+.++.|+|++++|++| .++.|++||++.
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~----~~~~~~~-------------~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVV----AEKDRPH-------------EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp EEEETTSEEEEEETTTTEEE----EEEECSS-------------CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred EEEecCCcEEEEeCCCCcee----eeeccCC-------------CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 99999999999999987654 444 342 33 38999999999999998 469999999987
Q ss_pred CCceeeeee-cccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcCCCcEEEEEeCCCCceeEEEec--cCCccccc
Q 011368 344 DSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEA--GKNENRKP 419 (487)
Q Consensus 344 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~ 419 (487)
...++.... .+... +..++|+|++++|+ +|+.||.|++||+.+++.....+.. |..++..+
T Consensus 255 ~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~ 319 (402)
T 2aq5_A 255 LEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM 319 (402)
T ss_dssp CSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE
T ss_pred ccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccce
Confidence 443343333 22222 25899999999986 5668999999999988643445544 45899999
Q ss_pred eEeeCCccccccccceeeecccce-ecCC
Q 011368 420 ILQAAPRARRSSLSNLTRGLYRQA-HENS 447 (487)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~ 447 (487)
+++| ++.+ ++++. +. ++|.
T Consensus 320 ~~sp--~~~~-----~~s~~--~~~~~~~ 339 (402)
T 2aq5_A 320 GYMP--KRGL-----EVNKC--EIARFYK 339 (402)
T ss_dssp EECC--GGGS-----CGGGT--EEEEEEE
T ss_pred EEec--cccc-----ceecc--eeEEEEE
Confidence 9998 5555 55433 34 7773
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=255.09 Aligned_cols=257 Identities=17% Similarity=0.212 Sum_probs=200.2
Q ss_pred cccccCcEEEEEEcCC---CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 28 ELQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
...|...|++++|+|+ +++|++|+.||.|++||+.+++. ....+.+|.
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~--- 111 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------------------------PVYSVKGHK--- 111 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS--------------------------CSEEECCCS---
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc--------------------------cEEEEEecc---
Confidence 3468899999999998 69999999999999999987752 146788898
Q ss_pred ccccccccccceeEEEEEe----cCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCC
Q 011368 105 DYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~----~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
..|.+++|.+ ++++.+|++++.|+.|++||+..++ .......
T Consensus 112 ---------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------------------ 158 (357)
T 3i2n_A 112 ---------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP------------------------ 158 (357)
T ss_dssp ---------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC------------------------
T ss_pred ---------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc------------------------
Confidence 8899998864 5789999999999999999998775 2222100
Q ss_pred CCcceeeeeeeeccceeeeecccCCCceeEEE----eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368 180 PSFAHGYHLEWTENMATKVYPHAHDFNINSIS----NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 254 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 254 (487)
....+...+.+++ |+|++++++++ .|+.|++||+++.. ... ...|..
T Consensus 159 -------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~--------~~~~~~ 210 (357)
T 3i2n_A 159 -------------------VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRW--------ETNIKN 210 (357)
T ss_dssp -------------------CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEE--------EEECSS
T ss_pred -------------------cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eee--------ecCCCC
Confidence 0012244788888 78999999999 99999999999543 322 245778
Q ss_pred cEEEEEEec---CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEE
Q 011368 255 VITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS 330 (487)
Q Consensus 255 ~v~~v~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s 330 (487)
.|.+++|+| ++ .+|++++.||.|++||+++++.. ..+.. ..+.+|...|.+++|+|+++ +|++
T Consensus 211 ~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~ 277 (357)
T 3i2n_A 211 GVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPT----KGFAS--------VSEKAHKSTVWQVRHLPQNRELFLT 277 (357)
T ss_dssp CEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETT----TEEEE--------EEEECCSSCEEEEEEETTEEEEEEE
T ss_pred ceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcc----cceee--------eccCCCcCCEEEEEECCCCCcEEEE
Confidence 999999999 88 99999999999999999986543 22221 01224678999999999998 7888
Q ss_pred Ee-CCeEEEEeCCCCC------------------ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcC
Q 011368 331 RD-YMNLKLWDIRMDS------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY 390 (487)
Q Consensus 331 ~~-d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~ 390 (487)
++ ||.|++||++... ..+..+..|...+ ++++|+|++++|+ +++.
T Consensus 278 ~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~s~~~ 342 (357)
T 3i2n_A 278 AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI---------------SSLDWSPDKRGLCVCSSF 342 (357)
T ss_dssp EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE---------------EEEEECSSSTTEEEEEET
T ss_pred EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe---------------eEEEEcCCCCeEEEEecC
Confidence 76 5999999997522 2355566665543 6999999999998 8999
Q ss_pred CCcEEEEEeCCC
Q 011368 391 SNLLRIFSHGVG 402 (487)
Q Consensus 391 dg~i~iwd~~~~ 402 (487)
||.|++||+.+.
T Consensus 343 d~~i~iw~~~~~ 354 (357)
T 3i2n_A 343 DQTVRVLIVTKL 354 (357)
T ss_dssp TSEEEEEEECC-
T ss_pred CCcEEEEECCCc
Confidence 999999999865
No 93
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.6e-32 Score=258.68 Aligned_cols=261 Identities=13% Similarity=0.161 Sum_probs=172.2
Q ss_pred CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD 204 (487)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
+++.+|++++.|++|+|||...++...... .. .+.+|.
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~-----------------------------------------~~-~~~gH~ 136 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQHV-----------------------------------------LG-GKSGHH 136 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEEE-----------------------------------------EC-TTTSCS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceeee-----------------------------------------ec-ccCCCC
Confidence 456789999999999999999876543211 11 147999
Q ss_pred CceeEEEeCC--------CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368 205 FNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 205 ~~v~~i~~s~--------~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 275 (487)
+.|++++|+| |+++|++| .|++|+|||+.+...... +.+|...|.+++|+|++..+|++++.|
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~~~p~~~~~l~~~~~d 208 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQFRPSNPNQLIVGERN 208 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEEECCCCCceEEecCCC
Confidence 9999999987 78999999 999999999985554443 346888999999999874689999999
Q ss_pred CeEEEEEccCCccccccceeeccc--------ccccCccccccccccceeEEEEc-CCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 276 GFVRLVDMRQSALCDHSARILRDA--------AESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 276 g~i~iwd~~~~~~~~~~~~~~~~h--------~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
+.|++||+++++...........+ ...........+|...+.++.|+ |+++.|++++ |+.+++||+.. +
T Consensus 209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~-~ 287 (393)
T 4gq1_A 209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA-N 287 (393)
T ss_dssp SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc-C
Confidence 999999999876432111111100 00011112235688899999987 8999999986 59999999986 5
Q ss_pred ceeeeeecccccccccc------cccCCCCcceeeEEEEcC--CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccc
Q 011368 346 TPVATFKIHEHLRPKLC------DLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 417 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~s~--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 417 (487)
.....+..+...+.... ........ ....++| ++.++++|+.||.|+|||+.+++.. .
T Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-~---------- 353 (393)
T 4gq1_A 288 NDYNEISDSTMKLGPKNLLPNVQGISLFPSL---LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-S---------- 353 (393)
T ss_dssp ----------------CCSCSEEEECSSCCS---SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-E----------
T ss_pred CCCceEeeecCccccEEEccccccccccCcc---eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-E----------
Confidence 55555554443221110 00001111 1344554 4557788899999999999877331 1
Q ss_pred cceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 418 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
...+|..+|.+++|||||++||+++++++.+|.
T Consensus 354 ------------------------------------~~~~~~~~V~svafspdG~~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 354 ------------------------------------IPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR 386 (393)
T ss_dssp ------------------------------------EEEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred ------------------------------------EecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 112345589999999999999999999999886
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.7e-32 Score=253.12 Aligned_cols=268 Identities=9% Similarity=0.035 Sum_probs=213.5
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
+.|.+++|+ |++.+|++++.|+.|++|++..+.....
T Consensus 12 ~~v~~~~~s--~~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------------------------------- 48 (342)
T 1yfq_A 12 DYISDIKII--PSKSLLLITSWDGSLTVYKFDIQAKNVD----------------------------------------- 48 (342)
T ss_dssp SCEEEEEEE--GGGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------------------
T ss_pred CcEEEEEEc--CCCCEEEEEcCCCeEEEEEeCCCCcccc-----------------------------------------
Confidence 899999995 6789999999999999999987751110
Q ss_pred ceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEc-cCCCceeEEeecCCCCCCC--CCCcEEEEEEecCCCCE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNL-EISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCNL 268 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~ 268 (487)
... ..+|...|.+++|+|+++ +|+++ .|+.|++||+ ... ... .+.+ |...|.+++|+| + .+
T Consensus 49 --~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~--------~~~~~~~~~~v~~l~~~~-~-~~ 114 (342)
T 1yfq_A 49 --LLQ-SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-SFQ--------ALTNNEANLGICRICKYG-D-DK 114 (342)
T ss_dssp --EEE-EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-SEE--------ECBSCCCCSCEEEEEEET-T-TE
T ss_pred --cee-eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-ceE--------eccccCCCCceEEEEeCC-C-CE
Confidence 001 257899999999999999 99999 9999999999 743 332 2466 999999999999 7 99
Q ss_pred EEEEeCCCeEEEEEccC---------CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEE
Q 011368 269 LAYSSSRGFVRLVDMRQ---------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL 338 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~i 338 (487)
|++++.|+.|++||+++ ++.. ..+. |...|.+++|+|++ ++++ .++.|++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~--------------~~~~v~~~~~~~~~--l~~~~~d~~i~i 174 (342)
T 1yfq_A 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNTK--------------VKNKIFTMDTNSSR--LIVGMNNSQVQW 174 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEESCS----SSSS--------------SCCCEEEEEECSSE--EEEEESTTEEEE
T ss_pred EEEEcCCCeEEEEcccccccccccccCCee----eEEe--------------eCCceEEEEecCCc--EEEEeCCCeEEE
Confidence 99999999999999986 4322 2222 36789999999988 5555 5699999
Q ss_pred EeCCC-CCceee-eeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCC-----CceeEEEe
Q 011368 339 WDIRM-DSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG-----SAGGITVE 410 (487)
Q Consensus 339 wd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~ 410 (487)
||++. ...... ....+... +.+++|+| ++++|++++.||.|++|++... ......+.
T Consensus 175 ~d~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 175 FRLPLCEDDNGTIEESGLKYQ---------------IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EESSCCTTCCCEEEECSCSSC---------------EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred EECCccccccceeeecCCCCc---------------eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 99986 333222 22233332 26999999 9999999999999999999887 36678888
Q ss_pred ccCC---------ccccceEeeCCccccccccceeeecccce-ecCCC--CCcccccccc-CCCeEEEEEcCCCCEEEEe
Q 011368 411 AGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNL-SSKLLHLAWHPTTNLIACA 477 (487)
Q Consensus 411 ~~~~---------~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~~-~~~v~~~~~spd~~~la~~ 477 (487)
.|.. ++.+++++| ++.+ |++|+.|+. ++|+. ++.......| ...|.+++ |++++|+++
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSP--RHKF-----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred cccccccccccceeEEEEEEcC--CCCE-----EEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEE
Confidence 8866 899999998 6667 999999999 99944 4445566677 89999999 999999999
Q ss_pred cCCeE
Q 011368 478 NGNSL 482 (487)
Q Consensus 478 s~~~~ 482 (487)
+.|+.
T Consensus 311 s~Dg~ 315 (342)
T 1yfq_A 311 TSDDT 315 (342)
T ss_dssp EECTH
T ss_pred ecCCc
Confidence 96653
No 95
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-31 Score=270.02 Aligned_cols=329 Identities=14% Similarity=0.115 Sum_probs=238.7
Q ss_pred cccC---cEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-c---CCC
Q 011368 30 QDVD---IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-Q---SHE 101 (487)
Q Consensus 30 ~h~~---~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~ 101 (487)
.|.. .|++++|+|+ +++|++|+.||.|++||+.+++. +..+ . +|.
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~~~~~~~ 253 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---------------------------LKYIEDDQEPVQ 253 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE---------------------------EEECCBTTBCCC
T ss_pred ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE---------------------------eEEecccccccC
Confidence 4777 8999999999 99999999999999999887654 3555 4 787
Q ss_pred cccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC---CCCceeeeeccccccccccccC
Q 011368 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD---HFPFVSSENTLLAEKNFMNEHN 178 (487)
Q Consensus 102 ~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 178 (487)
..|.+++| + ++.+|++++.|+.|++||+.+++........ ....+..+.+. ++..+..+.
T Consensus 254 ------------~~v~~~~~--~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 316 (615)
T 1pgu_A 254 ------------GGIFALSW--L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIISLS 316 (615)
T ss_dssp ------------SCEEEEEE--S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEEEEE
T ss_pred ------------CceEEEEE--c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEEEEE
Confidence 88999999 5 8899999999999999999988766554433 12333444442 444444443
Q ss_pred CCCcceeeeeeeeccceeeee--------------------------------cccCCCceeEEEeCCCCCEEEEe-cCC
Q 011368 179 PPSFAHGYHLEWTENMATKVY--------------------------------PHAHDFNINSISNNSDCETFVSA-DDL 225 (487)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~v~~i~~s~~~~~l~s~-~d~ 225 (487)
.+......... .......+ ..+|...|.+++| ++++.|+++ .|+
T Consensus 317 ~~g~i~~~d~~--~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 317 LDGTLNFYELG--HDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDD 393 (615)
T ss_dssp TTSCEEEEETT--EEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTT
T ss_pred CCCCEEEEECC--CCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCC
Confidence 33322221110 01111111 0345666666666 446677776 888
Q ss_pred eEEEEEccCCC----------------------ceeEEeecCC---CCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEE
Q 011368 226 RINLWNLEISD----------------------QCFNIVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVR 279 (487)
Q Consensus 226 ~i~iwd~~~~~----------------------~~~~~~~~~~---~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~ 279 (487)
.|++|++.... ..+.+++... .....+...+.+++|+ + .++++++. |+.|+
T Consensus 394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--Q-NYVAVGLEEGNTIQ 470 (615)
T ss_dssp EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--S-SEEEEEETTTSCEE
T ss_pred CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--C-CEEEEeecCCCeEE
Confidence 88888776311 1111111100 0011366788999999 6 89999999 99999
Q ss_pred EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeec-cccc
Q 011368 280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI-HEHL 357 (487)
Q Consensus 280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~-~~~~ 357 (487)
+||+.+++... .. +.+|...|.+++|+|++++|++++ |+.|++||+.+ ++.+..+.+ |...
T Consensus 471 ~~~~~~~~~~~---~~-------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~ 533 (615)
T 1pgu_A 471 VFKLSDLEVSF---DL-------------KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK 533 (615)
T ss_dssp EEETTEEEEEE---EC-------------SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC
T ss_pred EEECCCccccc---cc-------------cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc
Confidence 99998864320 12 234578999999999999999986 59999999987 788877776 7664
Q ss_pred ccccccccCCCCcceeeEEEEcC----------CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368 358 RPKLCDLYNNDSIFDKFECSVSG----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 427 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~s~----------d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 427 (487)
+ ++++|+| ++++|++|+.||.|++||+.++......+.+|...|.+++|+|..
T Consensus 534 v---------------~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~-- 596 (615)
T 1pgu_A 534 I---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-- 596 (615)
T ss_dssp E---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--
T ss_pred e---------------eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC--
Confidence 4 6999999 999999999999999999998866788899999999999999952
Q ss_pred ccccccceeeecccce-ecCCC
Q 011368 428 RRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 428 ~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
. |++++.|+. ++|+.
T Consensus 597 -----~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 597 -----T-LVSSGADACIKRWNV 612 (615)
T ss_dssp -----E-EEEEETTSCEEEEEE
T ss_pred -----C-eEEecCCceEEEEee
Confidence 2 688999998 99943
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-31 Score=249.83 Aligned_cols=302 Identities=17% Similarity=0.123 Sum_probs=204.5
Q ss_pred eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (487)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
..+.+|. +.|++++| ++++.+|++++.|+.|++||+.++.....
T Consensus 5 ~~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------------- 48 (351)
T 3f3f_A 5 PFDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNWE---------------------- 48 (351)
T ss_dssp CEECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCEE----------------------
T ss_pred ccCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcce----------------------
Confidence 4467888 99999999 57899999999999999999987542211
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCce-----eEEeecCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQC-----FNIVDMKP 246 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~-----~~~~~~~~ 246 (487)
.... +.+|...|.+++|+| ++++|+++ .|+.|++||++.+... ...+
T Consensus 49 --------------------~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---- 103 (351)
T 3f3f_A 49 --------------------LSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL---- 103 (351)
T ss_dssp --------------------EEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE----
T ss_pred --------------------ecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCccee----
Confidence 1111 368999999999999 69999999 9999999999854310 0110
Q ss_pred CCCCCCCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368 247 SNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 324 (487)
Q Consensus 247 ~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~ 324 (487)
..+.+|...|.+++|+|+ + .+|++++.||.|++||+++++.. ..+..............+|...+.+++|+|+
T Consensus 104 ~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (351)
T 3f3f_A 104 CTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDL----RSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178 (351)
T ss_dssp EEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCT----TCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred eeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHh----ccccccccccccccccCCcccceeEEEeccC
Confidence 135678999999999999 8 99999999999999999987654 2222101111111122356789999999997
Q ss_pred ---CCEEEEEe-CCeEEEEeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCC----CEEEEEcCCCcE
Q 011368 325 ---GQHLLSRD-YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LHFATGSYSNLL 394 (487)
Q Consensus 325 ---~~~l~s~~-d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~----~~l~sg~~dg~i 394 (487)
+.++++++ ++.+.+|+... +.. +..+.+|...+ ++++|+|++ ++|++|+.||.|
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 179 RFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp SSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCCSSCSSEEEEEEETTSCE
T ss_pred CCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCCCCCcceEEEEEcCCCeE
Confidence 88999886 48887777664 443 56666776644 699999998 899999999999
Q ss_pred EEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeeccc----ce-ecCCC--CCccccccccCCCeEEEEE
Q 011368 395 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR----QA-HENSS--SGHHELSYNLSSKLLHLAW 467 (487)
Q Consensus 395 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~----~~-~~w~~--~~~~~~~~~~~~~v~~~~~ 467 (487)
++||+.++.... ....+..........+ .... +..+..+ .. .+|.. .+......+|...|++++|
T Consensus 243 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 243 RIFKITEKLSPL-ASEESLTNSNMFDNSA--DVDM-----DAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EEEEEEECC-----------------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EEEeCCCCcCcc-ccCCcccceeccCCCc--cccc-----ccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999763322 2222222222222221 1111 2222222 22 33422 1234445678999999999
Q ss_pred cCCCCEEEEecCCe-EEEEe
Q 011368 468 HPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 468 spd~~~la~~s~~~-~~i~~ 486 (487)
+|++++||+++.|+ +++|+
T Consensus 315 s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEE
T ss_pred cCCCCEEEEecCCCcEEEEe
Confidence 99999999999665 99996
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-33 Score=266.34 Aligned_cols=283 Identities=12% Similarity=0.184 Sum_probs=212.2
Q ss_pred eEeee-cCCCcccccccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368 93 YKTEF-QSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (487)
Q Consensus 93 ~~~~~-~~h~~~~~~~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
.+..+ .+|. +.|.+++|+ + ++.+|++|+.|++|++||+.+.......
T Consensus 54 ~~~~~~~~h~------------~~V~~~~~s--~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~----------------- 102 (437)
T 3gre_A 54 LIATLMENEP------------NSITSSAVS--PGETPYLITGSDQGVIKIWNLKEIIVGEVY----------------- 102 (437)
T ss_dssp EEEEECTTTT------------SCEEEEEEE--CSSSCEEEEEETTSEEEEEEHHHHHTTCCC-----------------
T ss_pred EEeeeccCCC------------CceEEEEEC--CCCCCEEEEecCCceEEEeECcccccCccc-----------------
Confidence 45677 8898 899999995 6 8899999999999999999872210000
Q ss_pred cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEcc--CCCceeEEeecC--
Q 011368 171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMK-- 245 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~--~~~~~~~~~~~~-- 245 (487)
.+.. ...|...|.+++|+|++++|++| .|+.|++||++ ..+.........
T Consensus 103 -----------------------~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i 157 (437)
T 3gre_A 103 -----------------------SSSL--TYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECI 157 (437)
T ss_dssp -----------------------SCSE--EEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -----------------------ceee--eccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccccee
Confidence 0011 13689999999999999999999 99999999995 122232221100
Q ss_pred -CCCCCC--CCCcEEEEE--EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEE
Q 011368 246 -PSNMDD--LTEVITSAE--FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 320 (487)
Q Consensus 246 -~~~~~~--~~~~v~~v~--~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~ 320 (487)
...+.. +...+.++. ++|++ .+|++++.|+.|++||+++++.. ..+.. ..|...|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~-----------~~h~~~v~~~~ 221 (437)
T 3gre_A 158 RKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERL----QIIEN-----------SPRHGAVSSIC 221 (437)
T ss_dssp EEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEE----EEEEC-----------CGGGCCEEEEE
T ss_pred EEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeee----EEEcc-----------CCCCCceEEEE
Confidence 001122 566778887 55788 99999999999999999987654 55554 11468999999
Q ss_pred EcCCCCEEEEEe-CCeEEEEeCCCCCceeeeee-cccccccccccccCCCCcceeeEEEEc----CCCCEEEEEcCCCcE
Q 011368 321 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS----GDGLHFATGSYSNLL 394 (487)
Q Consensus 321 ~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s----~d~~~l~sg~~dg~i 394 (487)
|+|++++|++|+ |+.|++||+++ +.++..+. .|...+ ++++|+ |++.+|++|+.||.|
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPI---------------THVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEE---------------EEEEECTTTCTTEEEEEEESTTEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCce---------------EEEEeccccCCCccEEEEEcCCCcE
Confidence 999999999986 59999999997 78888775 454433 588555 578899999999999
Q ss_pred EEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCcccccc--ccCCCeEEEEEcCCCC
Q 011368 395 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY--NLSSKLLHLAWHPTTN 472 (487)
Q Consensus 395 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~--~~~~~v~~~~~spd~~ 472 (487)
++||+.++ .....+.+|...+..+.++|. ++. + ...... .|...|.+++|+ +++
T Consensus 286 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-----l---------------~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 286 TIWNFVKG-HCQYAFINSDEQPSMEHFLPI--EKG-----L---------------EELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEEETTTT-EEEEEEESSSSCCCGGGGSCB--CSS-----G---------------GGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEEEcCCC-cEEEEEEcCCCCCccceeccc--ccc-----c---------------ccceecccccCCceEEEEEC-Cce
Confidence 99999987 567889999999988888874 222 1 001122 377889999999 788
Q ss_pred EEEEec-CCeEEEEeC
Q 011368 473 LIACAN-GNSLFFHYA 487 (487)
Q Consensus 473 ~la~~s-~~~~~i~~~ 487 (487)
+|++|+ ++.+++|+.
T Consensus 342 ~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 342 ILLTDEATSSIVMFSL 357 (437)
T ss_dssp EEEEEGGGTEEEEEET
T ss_pred EEEecCCCCeEEEEEC
Confidence 999988 555999973
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-31 Score=253.31 Aligned_cols=216 Identities=16% Similarity=0.122 Sum_probs=164.9
Q ss_pred cceeEEEEEecCCCcEE-EEEeCCCcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+.|.+++| +|++++| ++++.|+.|++||+. +++......
T Consensus 103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------ 144 (450)
T 2vdu_B 103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------ 144 (450)
T ss_dssp CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence 67999999 6789886 889999999999998 665443310
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC---CC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YC 266 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~ 266 (487)
...|...|.+++|+|++++|++| .++.|++|++........ ....+.+|...|.+++|+|+ +
T Consensus 145 ---------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~~- 210 (450)
T 2vdu_B 145 ---------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF----TQEPILGHVSMLTDVHLIKDSDGH- 210 (450)
T ss_dssp ---------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC----CCCCSEECSSCEEEEEEEECTTSC-
T ss_pred ---------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc----cceeeecccCceEEEEEcCCCCCC-
Confidence 02567889999999999999999 999999999985443110 01246789999999999999 8
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.+|++++.|+.|++||+++++.. ..+. .+|...|.+++|+ ++++|++++ |+.|++||+++ +
T Consensus 211 ~~l~s~~~d~~i~vwd~~~~~~~----~~~~------------~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~-~ 272 (450)
T 2vdu_B 211 QFIITSDRDEHIKISHYPQCFIV----DKWL------------FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT-G 272 (450)
T ss_dssp EEEEEEETTSCEEEEEESCTTCE----EEEC------------CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT-C
T ss_pred cEEEEEcCCCcEEEEECCCCcee----eeee------------cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC-C
Confidence 99999999999999999987643 3311 2357899999999 999999986 59999999997 7
Q ss_pred ceeeeeecccccccccccc----------cCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEe
Q 011368 346 TPVATFKIHEHLRPKLCDL----------YNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSH 399 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~ 399 (487)
+.+..+..+.......... ........+.+++|+|++++|++++ .|+.|+||++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 7777776543111000000 0001112346999999999999998 8999999999
No 99
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=251.37 Aligned_cols=255 Identities=17% Similarity=0.204 Sum_probs=195.6
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
+..+.+|. +.|.+++| ++++.+|++++.|+.|++||+..+.....
T Consensus 4 ~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------------- 48 (379)
T 3jrp_A 4 VVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLI--------------------- 48 (379)
T ss_dssp -CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEE---------------------
T ss_pred cEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceee---------------------
Confidence 46688898 99999999 57899999999999999999984432211
Q ss_pred ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 250 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 250 (487)
.. +.+|...|++++|+++ +++|+++ .|+.|++||+..+.. ..+ ..+.
T Consensus 49 -----------------------~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~-----~~~~ 98 (379)
T 3jrp_A 49 -----------------------DT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQI-----AVHA 98 (379)
T ss_dssp -----------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-EEE-----EEEC
T ss_pred -----------------------eE-ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEe-----eeec
Confidence 11 3789999999999987 9999999 999999999995431 111 1346
Q ss_pred CCCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-----
Q 011368 251 DLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN----- 323 (487)
Q Consensus 251 ~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~----- 323 (487)
.|...|.+++|+|+ + .+|++++.|+.|++||++.+.... ...+. +|...|.+++|+|
T Consensus 99 ~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~-------------~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 99 VHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PIIID-------------AHAIGVNSASWAPATIEE 162 (379)
T ss_dssp CCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC--EEEEE-------------CCTTCEEEEEECCCC---
T ss_pred CCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee--eEEec-------------CCCCceEEEEEcCccccc
Confidence 78899999999999 8 999999999999999999864321 12222 3578999999999
Q ss_pred --------CCCEEEEEe-CCeEEEEeCCCCCc---eeeeeecccccccccccccCCCCcceeeEEEEcCC---CCEEEEE
Q 011368 324 --------DGQHLLSRD-YMNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATG 388 (487)
Q Consensus 324 --------~~~~l~s~~-d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~~~l~sg 388 (487)
++.+|++++ |+.|++||++.... ....+..|...+ ++++|+|+ +++|+++
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v---------------~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEECCCCSSSEEEEEE
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE---------------eEEEECCCCCCCCeEEEE
Confidence 689999986 59999999986332 345566676644 69999999 8999999
Q ss_pred cCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEc
Q 011368 389 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH 468 (487)
Q Consensus 389 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~s 468 (487)
+.||.|++||+.++...... .......+...|.+++|+
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKK------------------------------------------TLLKEEKFPDVLWRASWS 265 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEE------------------------------------------EESSSSCCSSCEEEEEEC
T ss_pred eCCCEEEEEeCCCCCcccee------------------------------------------eeeccccCCCcEEEEEEc
Confidence 99999999999876321000 001112355578888888
Q ss_pred CCCCEEEEecCCe-EEEEe
Q 011368 469 PTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 469 pd~~~la~~s~~~-~~i~~ 486 (487)
|++++|++++.|+ +++|+
T Consensus 266 ~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 266 LSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp SSSCCEEEEESSSSEEEEE
T ss_pred CCCCEEEEecCCCcEEEEe
Confidence 8888888877554 88875
No 100
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-31 Score=248.19 Aligned_cols=254 Identities=12% Similarity=0.187 Sum_probs=207.5
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|++++|+|++++|++++.||.|++||+.+++. ...+. |.
T Consensus 71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------------~~~~~-~~------- 115 (369)
T 3zwl_B 71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC---------------------------VATWK-SP------- 115 (369)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEE-CS-------
T ss_pred hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEee-cC-------
Confidence 34889999999999999999999999999999987754 34444 55
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCC-----CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|.+++| ++++.++++++.+ +.|++||+..+..........
T Consensus 116 -----~~v~~~~~--~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-------------------------- 162 (369)
T 3zwl_B 116 -----VPVKRVEF--SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS-------------------------- 162 (369)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC--------------------------
T ss_pred -----CCeEEEEE--ccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc--------------------------
Confidence 78999999 5789999999998 999999998765322111000
Q ss_pred eeeeeeeeccceeeeecccCCC--ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
...... +..|.. .+.+++|+|++++|+++ .|+.|++||+++....... +..|...|.+++
T Consensus 163 ---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~ 225 (369)
T 3zwl_B 163 ---------EEPIHK-IITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS-------IDLHEKSISDMQ 225 (369)
T ss_dssp ---------SSCSEE-EECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE-------EECCSSCEEEEE
T ss_pred ---------cceeee-ccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE-------EecCCCceeEEE
Confidence 001111 144555 89999999999999999 9999999999964555443 457889999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CC-----
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM----- 334 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~----- 334 (487)
|+|++ .+|++++.|+.|++||+++++.. ..+.. ...+..++|+|+++++++++ ++
T Consensus 226 ~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 226 FSPDL-TYFITSSRDTNSFLVDVSTLQVL----KKYET--------------DCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp ECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEECCC-----
T ss_pred ECCCC-CEEEEecCCceEEEEECCCCcee----eeecC--------------CCCceeEEecCCCceEEEeecCCCceEE
Confidence 99999 99999999999999999987654 44443 57899999999999999875 35
Q ss_pred ---------eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 335 ---------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 335 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+++||+.+ ++.+..+.+|...+ ++++|+|++++|++++.||.|++|+++++
T Consensus 287 ~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIF-EEEIGRVQGHFGPL---------------NTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp --------CEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EEecCCCcceeEEEecCC-CcchhheecccCcE---------------EEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 899999987 88888898888754 69999999999999999999999999865
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-31 Score=253.12 Aligned_cols=253 Identities=13% Similarity=0.095 Sum_probs=192.4
Q ss_pred cccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 30 ~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
.|...|.+++|+| ++++|++++.|+.|++||+.+... .......+|.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~~~~~------- 163 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-------------------------QVFAKTDSWD------- 163 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-------------------------EEEECCCCSS-------
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-------------------------EEEeccCCCC-------
Confidence 5899999999999 779999999999999999875321 1222223344
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++| ++++.+|++++.|+.|++||+.... ...
T Consensus 164 -----~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~-~~~------------------------------------ 199 (383)
T 3ei3_B 164 -----YWYCCVDV--SVSRQMLATGDSTGRLLLLGLDGHE-IFK------------------------------------ 199 (383)
T ss_dssp -----CCEEEEEE--ETTTTEEEEEETTSEEEEEETTSCE-EEE------------------------------------
T ss_pred -----CCeEEEEE--CCCCCEEEEECCCCCEEEEECCCCE-EEE------------------------------------
Confidence 78999999 4789999999999999999995332 221
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCC---ceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
+.+|...|.+++|+|+++ +|+++ .|+.|++||+++.. ..... .+|...|.+++|+|
T Consensus 200 -----------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~v~~~~~s~ 260 (383)
T 3ei3_B 200 -----------EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE--------MPHEKPVNAAYFNP 260 (383)
T ss_dssp -----------EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--------EECSSCEEEEEECT
T ss_pred -----------eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--------ecCCCceEEEEEcC
Confidence 268999999999999999 89998 99999999999632 23322 25889999999999
Q ss_pred -CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCc----cccccccccceeEEEEcCCCCEEEEE-eCCeEE
Q 011368 264 -IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS----KSFFTEIIASISDIKFANDGQHLLSR-DYMNLK 337 (487)
Q Consensus 264 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~ 337 (487)
++ .+|++++.|+.|++||+++++.. ..+..|...... ..........+..++|+|++++ ++ .|+.|+
T Consensus 261 ~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~ 333 (383)
T 3ei3_B 261 TDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTID 333 (383)
T ss_dssp TTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEE
T ss_pred CCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEE
Confidence 98 99999999999999999987654 444443211100 0000011234556777788777 44 469999
Q ss_pred EEeCCCCCceeeeeeccc--ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 338 LWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 338 iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+||+.+ ++.+..+.++. ..+ ..++|+|++++|++|+ ||.|+|||+++
T Consensus 334 iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 334 IYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999987 88888888743 222 3679999999999997 89999999874
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=260.04 Aligned_cols=248 Identities=11% Similarity=0.082 Sum_probs=183.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
++|.+++| +|++++|++++.|+.|++||+.++.....
T Consensus 12 ~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~----------------------------------------- 48 (377)
T 3dwl_C 12 KPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHA----------------------------------------- 48 (377)
T ss_dssp SCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEEEEC-----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCceEEE-----------------------------------------
Confidence 78999999 57899999999999999999987732111
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.. +.+|...|.+++|+|++++|+++ .|+.|++||+......... ..+.+|...|.+++|+|++ ++|+++
T Consensus 49 ---~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~-~~l~~~ 118 (377)
T 3dwl_C 49 ---RT-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT-----LVLLRLNRAATFVRWSPNE-DKFAVG 118 (377)
T ss_dssp ---CC-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE-----EECCCCSSCEEEEECCTTS-SCCEEE
T ss_pred ---EE-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee-----eEecccCCceEEEEECCCC-CEEEEE
Confidence 11 37899999999999999999999 9999999999855411111 1356799999999999999 999999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC-------
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD------- 344 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~------- 344 (487)
+.|+.|++||+++++... ..+.+.. .|...|.+++|+|++++|++++ |+.|++||+...
T Consensus 119 ~~d~~i~iwd~~~~~~~~-~~~~~~~------------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWW-VSKHLKR------------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ESSSCEEECCC-----CC-CCEEECS------------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred ecCCeEEEEEECCcccce-eeeEeec------------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 999999999999875210 0133332 1578999999999999999986 599999998531
Q ss_pred ----------CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 345 ----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 345 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
+.++..+ .|... +++++|+|++++|++++.||.|++||+.+++....
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~---------------v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~------- 242 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGW---------------VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR------- 242 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSS---------------EEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE-------
T ss_pred ccccccccchhhhhhcc-cCCce---------------EEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce-------
Confidence 2233333 44433 26999999999999999999999999998743100
Q ss_pred ccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 415 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
.......|...|.+++|+|++++|++++++++++|.
T Consensus 243 ------------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 243 ------------------------------------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp ------------------------------------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred ------------------------------------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 011223455678889999999999999888888875
No 103
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-32 Score=264.44 Aligned_cols=263 Identities=11% Similarity=0.057 Sum_probs=184.5
Q ss_pred cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
..+|.+.|++|+|+| ++++|++|+.||+|+|||++++.. +.......+.
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-------------------------~~~~~~~~~~----- 209 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-------------------------RVFASSDTIN----- 209 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-------------------------EEEECCSSCS-----
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-------------------------eEEeccCCCC-----
Confidence 346999999999998 689999999999999999876532 1111122222
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..+.+++| ++++.+|++|+.||.|++||+.+.....
T Consensus 210 -------~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~~----------------------------------- 245 (435)
T 4e54_B 210 -------IWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELWN----------------------------------- 245 (435)
T ss_dssp -------CCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCCC-----------------------------------
T ss_pred -------ccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeEE-----------------------------------
Confidence 56788999 5789999999999999999987543221
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
+.+|...|++++|+|++. +|++| .|+.|++||++........ ....+|...|++++|+|+
T Consensus 246 -------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~spd 307 (435)
T 4e54_B 246 -------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSLPHRHPVNAACFSPD 307 (435)
T ss_dssp -------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCCBCSSCEEECCBCTT
T ss_pred -------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEeeeccccccceeECCC
Confidence 378999999999999876 67778 9999999999854432211 234679999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccc----cccccccceeEEEEcCCCCEEEEE-eC-CeEEE
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS----FFTEIIASISDIKFANDGQHLLSR-DY-MNLKL 338 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~----~~~~~~~~v~~v~~s~~~~~l~s~-~d-~~i~i 338 (487)
| .+|++++.||.|++||++++... ..+..|........ ........+..+.+++++..++++ .+ +.|++
T Consensus 308 g-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i 382 (435)
T 4e54_B 308 G-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV 382 (435)
T ss_dssp S-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred C-CeeEEEcCCCEEEEEECCCCccc----eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE
Confidence 9 99999999999999999987654 33333221110000 000011223333344444433332 22 67999
Q ss_pred EeCCCCCceeeeee-cccccccccccccCCCCcceeeEE-EEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 339 WDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 339 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
||..+ ++.+..+. .|...+ .++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus 383 wd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 383 FDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp ECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 99987 77776664 444432 355 7999999999876 77999999998754
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-30 Score=243.53 Aligned_cols=249 Identities=11% Similarity=0.109 Sum_probs=174.8
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+|||++||+|+.++ ++||++++.+. .. ..+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~---------------------------~~--~~~~------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH---------------------------IM--SQEM------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE---------------------------EE--EEEC-------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce---------------------------ee--eeec-------
Confidence 34889999999999999999998775 78999875542 11 1111
Q ss_pred ccccccceeEEEEEecCCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..+..+++. ++++.+ ++++.|++|++||+.+++....
T Consensus 59 -----~~~~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~~~~~~----------------------------------- 96 (355)
T 3vu4_A 59 -----RHLSKVRML--HRTNYVAFVTGVKEVVHIWDDVKKQDVSR----------------------------------- 96 (355)
T ss_dssp -----SCCCEEEEC--TTSSEEEEECSSTTEEEEEETTTTEEEEE-----------------------------------
T ss_pred -----CCeEEEEEc--CCCCEEEEEECCccEEEEEECCCCcEEEE-----------------------------------
Confidence 336778884 455565 5677889999999998876543
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
..+...|.+++++++ .++++.|+.|++||+.+..+.+. .+.. ....+++++ .
T Consensus 97 -------------~~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~-------~~~~---~~~~~~~s~-~-- 148 (355)
T 3vu4_A 97 -------------IKVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT-------DDIR---FGGVCEFSN-G-- 148 (355)
T ss_dssp -------------EECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS-------CCEE---EEEEEEEET-T--
T ss_pred -------------EECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE-------Eecc---CCceEEEEc-c--
Confidence 235668999999875 45556788999999995523321 2222 344556777 3
Q ss_pred EEEE--EeCCCeEEEEEccCCccccccceeecccccccCc-cccccccccceeEEEEcCCCCEEEEEe-CCe-EEEEeCC
Q 011368 268 LLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRD-YMN-LKLWDIR 342 (487)
Q Consensus 268 ~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~-i~iwd~~ 342 (487)
++++ |+.||.|++||++++............ ....+ ...+.+|...|.+++|+|+|++|++|+ |++ |++||++
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~--~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ--KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccc--cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 4555 578999999999976421000000000 00001 223456789999999999999999986 598 9999999
Q ss_pred CCCceeeeee-c-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 343 MDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 343 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+ ++.+..+. + |...+ ++++|+|+|++|++++.|++|+|||+..+
T Consensus 227 ~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 227 D-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp T-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred C-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 7 88888887 4 66544 69999999999999999999999999875
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.4e-31 Score=253.61 Aligned_cols=267 Identities=16% Similarity=0.229 Sum_probs=204.4
Q ss_pred ccccccCcEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 27 EELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
..+.|.+.|++++|+|+ +.+||+|+.||.|+||++.+.... .......+....+.+|.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~-----------------~~~~~~~~~~~~~~~h~---- 181 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK-----------------PEPSGECQPDLRLRGHQ---- 181 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS-----------------CCTTCCCCCSEEEECCS----
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc-----------------cCccccCCCcEEecCCC----
Confidence 35679999999999997 689999999999999998763221 00011234467788898
Q ss_pred cccccccccceeEEEEEecCCCc-EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..|.+++| ++++. +|++++.||.|++|++..+......
T Consensus 182 --------~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------------------- 220 (430)
T 2xyi_A 182 --------KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHRV------------------------------- 220 (430)
T ss_dssp --------SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGGE-------------------------------
T ss_pred --------CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCce-------------------------------
Confidence 88999999 46666 9999999999999999874321000
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCC--ceeEEeecCCCCCCCCCCcEEEEE
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
...... +.+|...|.+++|+| ++.+|+++ .|+.|++||++... .... .+..|...|++++
T Consensus 221 --------~~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 221 --------IDAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH-------TVDAHTAEVNCLS 284 (430)
T ss_dssp --------EECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE-------EEECCSSCEEEEE
T ss_pred --------ecccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee-------EeecCCCCeEEEE
Confidence 001111 368999999999999 67888898 99999999999653 2222 2357889999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEE
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKL 338 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~i 338 (487)
|+|++..+|++++.||.|++||+++.... +..+.. |...|.+++|+|+++ +|++++ |+.|++
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~-------------h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLK---LHSFES-------------HKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEEC-------------CSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeec-------------CCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 99998458999999999999999974321 245554 478999999999996 567765 699999
Q ss_pred EeCCCCC-------------ceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCC
Q 011368 339 WDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 339 wd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~ 402 (487)
||+...+ ..+..+.+|...+ ++++|+|+++ +|++++.||.|+||++...
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9997522 3455555665533 6999999999 8999999999999999754
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-30 Score=249.63 Aligned_cols=274 Identities=16% Similarity=0.235 Sum_probs=196.1
Q ss_pred ccccceeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.+.+.|++++|+ |+ +.+|++++.||.|++|++...........
T Consensus 126 ~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~---------------------------------- 169 (430)
T 2xyi_A 126 NHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG---------------------------------- 169 (430)
T ss_dssp EESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC----------------------------------
T ss_pred cCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCccc----------------------------------
Confidence 334899999996 44 67899999999999999986311100000
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
....... +.+|...|++++|+|++. +|++| .||.|++|++.........+. ....+.+|...|.+++|+|++..
T Consensus 170 --~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~ 245 (430)
T 2xyi_A 170 --ECQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTGHTAVVEDVAWHLLHES 245 (430)
T ss_dssp --CCCCSEE-EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEEECCCSSCEEEEEECSSCTT
T ss_pred --cCCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cceeecCCCCCEeeeEEeCCCCC
Confidence 0011111 368999999999999988 99999 999999999986332111100 01235689999999999995448
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEEEeCCCCC
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~iwd~~~~~ 345 (487)
+|++++.||.|++||++++... .....+.. |...|++++|+|++. +|++|+ ||.|++||++...
T Consensus 246 ~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~-------------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 246 LFGSVADDQKLMIWDTRNNNTS-KPSHTVDA-------------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311 (430)
T ss_dssp EEEEEETTSEEEEEETTCSCSS-SCSEEEEC-------------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred EEEEEeCCCeEEEEECCCCCCC-cceeEeec-------------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC
Confidence 9999999999999999986311 11133333 478999999999998 577776 5999999999756
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 424 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 424 (487)
.++..+..|...+ ++++|+|+++ +|++++.||.|+|||+.......... .. .
T Consensus 312 ~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~---~- 364 (430)
T 2xyi_A 312 LKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE--------DA---E- 364 (430)
T ss_dssp SCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH--------HH---H-
T ss_pred CCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc--------cc---c-
Confidence 7788888887654 6999999985 69999999999999998743211000 00 0
Q ss_pred CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCC-EEEEecCCe-EEEEe
Q 011368 425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN-LIACANGNS-LFFHY 486 (487)
Q Consensus 425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~s~~~-~~i~~ 486 (487)
++. .+......+|...|.+++|+|+++ +|++++.|+ +.||.
T Consensus 365 -~~~--------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 365 -DGP--------------------PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -HCC--------------------TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -cCC--------------------cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 000 012223446777899999999999 788888655 88886
No 107
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-30 Score=239.49 Aligned_cols=247 Identities=19% Similarity=0.282 Sum_probs=200.5
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...|++++|+|++++||+|+.||+|+||++.+++. +..+.+|.
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~---------------------------~~~~~~h~------- 109 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---------------------------LRNMTSHS------- 109 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee---------------------------EEEecCcc-------
Confidence 35788999999999999999999999999999887754 57788998
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..+.++.+ ++..+++++.++.+++|+.........
T Consensus 110 -----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~------------------------------------ 144 (318)
T 4ggc_A 110 -----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA------------------------------------ 144 (318)
T ss_dssp -----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE------------------------------------
T ss_pred -----ceEEEeec----CCCEEEEEecCCceEeeecCCCceeEE------------------------------------
Confidence 77777665 357899999999999999876643221
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
.+.+|...+..+.+++++++++++ .|+.|++||++++...... ......+...|.++.++|.+..
T Consensus 145 ----------~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 210 (318)
T 4ggc_A 145 ----------TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKAVAWCPWQSN 210 (318)
T ss_dssp ----------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----SEEECCCCSCEEEEEECTTSTT
T ss_pred ----------EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----eeeecccCCceEEEEecCCCCc
Confidence 136899999999999999999999 9999999999854432111 1123567788999999998755
Q ss_pred EEE--EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---CCeEEEEeCC
Q 011368 268 LLA--YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIR 342 (487)
Q Consensus 268 ~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---d~~i~iwd~~ 342 (487)
.+. +++.++.|++||.+..... .... +...+..+.|+|++..+++++ |+.|++||++
T Consensus 211 ~~~~~~~~~~~~i~lwd~~~~~~~----~~~~--------------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 211 VLATGGGTSDRHIRIWNVCSGACL----SAVD--------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp EEEEEECTTTCEEEEEETTTCCEE----EEEE--------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred EEEEEecCCCCEEEEEeccccccc----cccc--------------ceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence 553 4557899999999886533 2222 256799999999999888653 5999999999
Q ss_pred CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+ ++++..+.+|...+ ++++|+|||++|++|+.||+|+|||+.+.
T Consensus 273 ~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 273 T-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp T-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred C-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7 89999999998765 69999999999999999999999999754
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-30 Score=236.20 Aligned_cols=241 Identities=17% Similarity=0.275 Sum_probs=196.7
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...|.+++|+|++++|++|+.||.|++|++..... .+....+.+|.
T Consensus 55 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------~~~~~~~~~~~------ 104 (313)
T 3odt_A 55 VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------EDPLYTLIGHQ------ 104 (313)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------SCC-CEECCCS------
T ss_pred eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------CCcccchhhcc------
Confidence 345788999999999999999999999999999876532 23356678888
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++| ++.++++++.|+.|++|| .++....
T Consensus 105 ------~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~----------------------------------- 137 (313)
T 3odt_A 105 ------GNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYN----------------------------------- 137 (313)
T ss_dssp ------SCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEE-----------------------------------
T ss_pred ------cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEe-----------------------------------
Confidence 88999999 356999999999999999 3322221
Q ss_pred eeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPI 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~ 264 (487)
+..|...+.+++|.| +++.++++ .|+.|++||.. ..... +.. |...+.+++|+|+
T Consensus 138 ------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~-------~~~~~~~~i~~~~~~~~ 195 (313)
T 3odt_A 138 ------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKT-------FSGIHNDVVRHLAVVDD 195 (313)
T ss_dssp ------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEE-------ECSSCSSCEEEEEEEET
T ss_pred ------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEE-------EeccCcccEEEEEEcCC
Confidence 267899999999988 89999999 99999999944 22222 233 8889999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCC
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM 343 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~ 343 (487)
+ . +++++.||.|++||+++++.. ..+.. |...|.+++|+|++. |+++ .|+.|++||+++
T Consensus 196 ~-~-~~~~~~dg~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 196 G-H-FISCSNDGLIKLVDMHTGDVL----RTYEG-------------HESFVYCIKLLPNGD-IVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp T-E-EEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEECTTSC-EEEEETTSEEEEECTTT
T ss_pred C-e-EEEccCCCeEEEEECCchhhh----hhhhc-------------CCceEEEEEEecCCC-EEEEecCCEEEEEECCC
Confidence 8 6 999999999999999987654 55555 478999999999995 5555 579999999987
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
++.+..+..|...+ ++++|+|+++ +++++.||.|++|++.+++.
T Consensus 256 -~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 256 -GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp -CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred -CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 88888888887644 6999999998 66799999999999987643
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9e-30 Score=245.89 Aligned_cols=265 Identities=13% Similarity=0.193 Sum_probs=217.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|.+.|++++|+ +++|++|+.||+|++||+.+++. ...+.+|.
T Consensus 156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~---------------------------~~~~~~h~------- 199 (445)
T 2ovr_B 156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC---------------------------IHTLYGHT------- 199 (445)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-------
T ss_pred cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE---------------------------EEEECCCC-------
Confidence 3588999999998 56999999999999999887653 57788998
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.+++|. +..+++++.|+.|++||+.+++....
T Consensus 200 -----~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~------------------------------------ 234 (445)
T 2ovr_B 200 -----STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV------------------------------------ 234 (445)
T ss_dssp -----SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE------------------------------------
T ss_pred -----CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE------------------------------------
Confidence 889999993 46899999999999999998765543
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+.+|...|.++++ +++.+++| .|+.|++||+++. .... .+.+|...|.++.| ++ .
T Consensus 235 -----------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~-------~~~~~~~~v~~~~~--~~-~ 290 (445)
T 2ovr_B 235 -----------LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLH-------TLQGHTNRVYSLQF--DG-I 290 (445)
T ss_dssp -----------EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EEEE-------EECCCSSCEEEEEE--CS-S
T ss_pred -----------EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cEeE-------EecCCCCceEEEEE--CC-C
Confidence 3688999999999 68899999 9999999999854 3433 24678899999999 66 8
Q ss_pred EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 346 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~ 346 (487)
++++++.||.|++||+++++.. ..+.. |...+.++.++ ++++++++ ||.|++||+++ ++
T Consensus 291 ~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~-~~ 350 (445)
T 2ovr_B 291 HVVSGSLDTSIRVWDVETGNCI----HTLTG-------------HQSLTSGMELK--DNILVSGNADSTVKIWDIKT-GQ 350 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEE----EEECC-------------CCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CC
T ss_pred EEEEEeCCCeEEEEECCCCCEE----EEEcC-------------CcccEEEEEEe--CCEEEEEeCCCeEEEEECCC-Cc
Confidence 9999999999999999987654 45555 36678887774 66888886 69999999987 78
Q ss_pred eeeeeec---ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEE-----eccCCcccc
Q 011368 347 PVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV-----EAGKNENRK 418 (487)
Q Consensus 347 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~ 418 (487)
.+..+.. |...+ ++++|+ +++|++|+.||.|++||+.+++. ...+ ..|...+.+
T Consensus 351 ~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 351 CLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp EEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCE-EEEEEECTTGGGTCEEEE
T ss_pred EEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCCce-eeeeeccccCCCCceEEE
Confidence 8888876 33322 578885 68999999999999999998854 4455 478889999
Q ss_pred ceEeeCCccccccccceeeecccce
Q 011368 419 PILQAAPRARRSSLSNLTRGLYRQA 443 (487)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~g~~~~~ 443 (487)
++++| ++.+ +++|+.|+.
T Consensus 413 ~~~s~--~~~~-----la~~~~dg~ 430 (445)
T 2ovr_B 413 IRASN--TKLV-----CAVGSRNGT 430 (445)
T ss_dssp EEECS--SEEE-----EEEECSSSS
T ss_pred EEecC--CEEE-----EEEcccCCC
Confidence 99998 6676 899998873
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-31 Score=244.33 Aligned_cols=246 Identities=15% Similarity=0.105 Sum_probs=181.9
Q ss_pred EEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeE
Q 011368 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (487)
Q Consensus 39 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~ 118 (487)
.+.+++++|++|+.||.|++||+.+++.. ..+. . ..|.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---------------------------~~~~--~------------~~v~~ 81 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI---------------------------TTIT--T------------PNPRT 81 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE---------------------------EEEE--E------------ECCCT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE---------------------------EEEe--c------------CCcee
Confidence 44568899999999999999999887642 2232 2 56778
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeee
Q 011368 119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKV 198 (487)
Q Consensus 119 v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (487)
+.|+ |+ +++++.|++|++|+.......... ......+.
T Consensus 82 ~~~~--~~---~~s~s~D~~i~~w~~~~~~~~~~~-------------------------------------~~~~~~~~ 119 (343)
T 3lrv_A 82 GGEH--PA---IISRGPCNRLLLLYPGNQITILDS-------------------------------------KTNKVLRE 119 (343)
T ss_dssp TCCC--CS---EEEECSTTEEEEEETTTEEEEEET-------------------------------------TTCCEEEE
T ss_pred eeeC--Cc---eEEecCCCeEEEEEccCceEEeec-------------------------------------CCcceeEE
Confidence 8885 33 999999999999998753211110 00111222
Q ss_pred ecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368 199 YPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 199 ~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 275 (487)
+..+|...|.+++|+| ++++++++ .|++|++||++++. ..... ...+...+.+++|+|++ .+|++|+.|
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~------~~~~~~~i~~~~~~pdg-~~lasg~~d 191 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVH------SAKSDVEYSSGVLHKDS-LLLALYSPD 191 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEE------CCCSSCCCCEEEECTTS-CEEEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEE------ecCCCCceEEEEECCCC-CEEEEEcCC
Confidence 2357778999999999 99999999 99999999999544 44332 13455679999999999 999999999
Q ss_pred CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeec--
Q 011368 276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI-- 353 (487)
Q Consensus 276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~-- 353 (487)
|.|++||+++++... ..+.. +|...|.+++|+|+|.+|++++++.|++||+++ ...+..+..
T Consensus 192 g~i~iwd~~~~~~~~---~~~~~------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~-~~~~~~~~~~~ 255 (343)
T 3lrv_A 192 GILDVYNLSSPDQAS---SRFPV------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK-DVGTLAYPTYT 255 (343)
T ss_dssp SCEEEEESSCTTSCC---EECCC------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTS-STTCBSSCCCB
T ss_pred CEEEEEECCCCCCCc---cEEec------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC-CCcceeecccc
Confidence 999999999876321 22332 257899999999999999999888999999987 555444443
Q ss_pred -ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCc
Q 011368 354 -HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSA 404 (487)
Q Consensus 354 -~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~ 404 (487)
+...+. . .+++|+|+|++|++++. |+.|+||++.+...
T Consensus 256 ~~~~~~~------------~-~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 256 IPEFKTG------------T-VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp C-----C------------C-EEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred ccccccc------------c-eEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 222110 0 26999999999999988 99999999976643
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.6e-30 Score=247.72 Aligned_cols=263 Identities=14% Similarity=0.130 Sum_probs=201.4
Q ss_pred cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...|.+.|++++|+| ++++|++|+.||.|+||++.++... ....+....+.+|.
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--------------------~~~~~~~~~~~~h~----- 131 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--------------------LPLREPVITLEGHT----- 131 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS--------------------SCBCSCSEEEECCS-----
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc--------------------cccCCceEEecCCC-----
Confidence 446999999999999 9999999999999999999877431 00112356788898
Q ss_pred ccccccccceeEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 107 LKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..|.+++|+ |++ .+|++++.|+.|++||+.+++......
T Consensus 132 -------~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------- 171 (402)
T 2aq5_A 132 -------KRVGIVAWH--PTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------------------------------- 171 (402)
T ss_dssp -------SCEEEEEEC--SSBTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred -------CeEEEEEEC--cCCCCEEEEEcCCCEEEEEECCCCCccEEEe-------------------------------
Confidence 899999994 666 699999999999999999886544310
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc-EEEEEEec
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHP 263 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p 263 (487)
..+|...|.+++|+|++++|+++ .|+.|++||++++ .....+ ...|... +.++.|+|
T Consensus 172 --------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~------~~~~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 172 --------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-TVVAEK------DRPHEGTRPVHAVFVS 230 (402)
T ss_dssp --------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEE------ECSSCSSSCCEEEECS
T ss_pred --------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-ceeeee------ccCCCCCcceEEEEcC
Confidence 15789999999999999999999 9999999999954 333321 1456554 89999999
Q ss_pred CCCCEEEEE---eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEE
Q 011368 264 IYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKL 338 (487)
Q Consensus 264 ~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~i 338 (487)
++ .+|+++ +.|+.|++||+++++... ..... .|...+.+++|+|++++|++ |+ |+.|++
T Consensus 231 ~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~---~~~~~------------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 231 EG-KILTTGFSRMSERQVALWDTKHLEEPL---SLQEL------------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp TT-EEEEEEECTTCCEEEEEEETTBCSSCS---EEEEC------------CCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred CC-cEEEEeccCCCCceEEEEcCccccCCc---eEEec------------cCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 99 899998 789999999999865321 22221 13567999999999999974 54 699999
Q ss_pred EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 407 (487)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~ 407 (487)
||+......+..+..+.... . +.+++|+|++.++++ .++.+++|++.++.....
T Consensus 295 ~d~~~~~~~~~~l~~~~~~~----------~---v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 295 FEITSEAPFLHYLSMFSSKE----------S---QRGMGYMPKRGLEVN--KCEIARFYKLHERKCEPI 348 (402)
T ss_dssp EEECSSTTCEEEEEEECCSS----------C---CSEEEECCGGGSCGG--GTEEEEEEEEETTEEEEE
T ss_pred EEecCCCcceEeecccccCC----------c---ccceEEeccccccee--cceeEEEEEcCCCcEEEE
Confidence 99987333355555543111 1 259999999998764 566999999998754433
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=8.5e-31 Score=253.30 Aligned_cols=248 Identities=14% Similarity=0.164 Sum_probs=169.5
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
.+.|.+++| +|++.+|++|+.||.|++||+.+++.........
T Consensus 28 ~~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~----------------------------------- 70 (447)
T 3dw8_B 28 ADIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE----------------------------------- 70 (447)
T ss_dssp GGSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCCCC-----------------------------------
T ss_pred cCcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc-----------------------------------
Confidence 489999999 5789999999999999999998765211000000
Q ss_pred cceeeeecccCC------------CceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecC------------
Q 011368 193 NMATKVYPHAHD------------FNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMK------------ 245 (487)
Q Consensus 193 ~~~~~~~~~~~~------------~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~------------ 245 (487)
...... +.+|. ..|++++|+|++ ..|+++ .|+.|++||+.........+...
T Consensus 71 ~~~~~~-~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~ 149 (447)
T 3dw8_B 71 YNVYST-FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV 149 (447)
T ss_dssp EEEEEE-EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC
T ss_pred eeEecc-cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc
Confidence 001111 25676 889999999998 789998 99999999998432210000000
Q ss_pred --------------------CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCc
Q 011368 246 --------------------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 305 (487)
Q Consensus 246 --------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~ 305 (487)
.....+|...|.+++|+|++ ++|+++ .|+.|++||+++..... ..+.. .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~---~~~~~------~ 218 (447)
T 3dw8_B 150 TTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSF---NIVDI------K 218 (447)
T ss_dssp CSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEE---EEEEC------C
T ss_pred cceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCcee---eeeec------c
Confidence 00135799999999999999 999998 89999999998533211 22111 0
Q ss_pred cccccccccceeEEEEcCCC-CEEEEEe-CCeEEEEeCCCCCce----eeeeecccccccccccccCCCCcceeeEEEEc
Q 011368 306 KSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 379 (487)
Q Consensus 306 ~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 379 (487)
...+.+|...|.+++|+|++ ++|++|+ |+.|++||+++ +.. +..+..|........ +. .....+.+++|+
T Consensus 219 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~v~~~~~s 294 (447)
T 3dw8_B 219 PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSF-FS--EIISSISDVKFS 294 (447)
T ss_dssp CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCH-HH--HHTTCEEEEEEC
T ss_pred cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCcccccc-cc--ccCceEEEEEEC
Confidence 11245678899999999998 8999886 59999999987 554 667777654100000 00 000023699999
Q ss_pred CCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368 380 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 380 ~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 414 (487)
|+|++|++++. +.|++||+.+.......+.+|..
T Consensus 295 ~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 295 HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp TTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred CCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 99999999999 99999999874455666766654
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.7e-31 Score=249.32 Aligned_cols=262 Identities=11% Similarity=0.076 Sum_probs=198.3
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
++...|.+|+| +|||+++|+++.|++|+ |...++.
T Consensus 13 ~~~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~----------------------------------------- 47 (588)
T 2j04_A 13 EFEDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKD----------------------------------------- 47 (588)
T ss_dssp CCSSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSC-----------------------------------------
T ss_pred HhhccEEEEEE--CCCCCEEEEEcCCceee--cccccce-----------------------------------------
Confidence 34488999999 68999999999999999 5333221
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
+.+|...|.+++|+|+| .++.+.+|+.+ +.... ++ .|...|.+++|+|+| ..||
T Consensus 48 ---------l~gh~~~v~~V~FsPdg------~~~~~~~~~~~-~~~~~--------~~-~~~~~V~~vawSPdG-~~LA 101 (588)
T 2j04_A 48 ---------INCNSKNLFHVKEFPLE------FENKLDFELAQ-QNGLL--------NS-QPVCYPRVCKPSPID-DWMA 101 (588)
T ss_dssp ---------CSSBGGGTEEEEEECCC------CCCTTTTSCCC-SSCSS--------TT-SCSCCEEEEEECSSS-SCEE
T ss_pred ---------ecCCCccEEEEEECCCC------CcceEEEEeCC-CceEe--------ec-CCCCcEEEEEECCCC-CEEE
Confidence 26899999999999999 45555555544 22211 22 457889999999999 9999
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc---
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST--- 346 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~--- 346 (487)
+++.||.|++||..+ .. ..+. |.... -...+.+++|||||++|++|+ ||+|++||+.. +.
T Consensus 102 s~s~dg~V~iwd~~~--~l----~~l~-~~~~~--------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~ 165 (588)
T 2j04_A 102 VLSNNGNVSVFKDNK--ML----TNLD-SKGNL--------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENT 165 (588)
T ss_dssp EEETTSCEEEEETTE--EE----EECC-CSSCS--------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTC
T ss_pred EEeCCCcEEEEeCCc--ee----eecc-CCCcc--------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Ccccc
Confidence 999999999999544 11 3333 31100 013599999999999999987 59999999986 43
Q ss_pred ----eeeee----ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc--eeEEE-eccCCc
Q 011368 347 ----PVATF----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--GGITV-EAGKNE 415 (487)
Q Consensus 347 ----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~--~~~~~-~~~~~~ 415 (487)
.+..+ .+|... |.+++|+||| +++++.|++|++|++.+++. ...++ .+|...
T Consensus 166 ~~~i~l~ti~~~~~gh~~~---------------V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDW---------------VTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp CCCEEEEEEECSCTTCCCC---------------EEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred ccceeeeeeeccccccccc---------------EEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 25565 344443 3699999999 88899999999999988753 23567 488999
Q ss_pred cccceEeeCCccccccccceeeecccce-ecCCCC-Ccc-ccccccCCCeEEEEE--cCCCCEEEEecCCeEEEEe
Q 011368 416 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHH-ELSYNLSSKLLHLAW--HPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~-~~~-~~~~~~~~~v~~~~~--spd~~~la~~s~~~~~i~~ 486 (487)
|.+++|+ +.. +++++ ++. ++|+.. ... ....+|...|.+++| +||+..|++++.++..+|.
T Consensus 229 V~svaFs----g~~-----LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~ 294 (588)
T 2j04_A 229 ITDLKIV----DYK-----VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLL 294 (588)
T ss_dssp CCCEEEE----TTE-----EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEE
T ss_pred EEEEEEE----CCE-----EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEe
Confidence 9999998 244 78877 466 999543 333 333489999999999 9999999999977767775
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=1.2e-29 Score=244.08 Aligned_cols=264 Identities=16% Similarity=0.248 Sum_probs=215.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.+++| +++++++|+.|+.|++||+.+++....
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~----------------------------------------- 168 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI----------------------------------------- 168 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------------------------
Confidence 67888876 688999999999999999988775543
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+.+|...|.+++| ++++|++| .||.|++||+.++. ... .+.+|...|.+++|++ ..++++
T Consensus 169 ------~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-~~~-------~~~~h~~~v~~l~~~~---~~l~s~ 229 (435)
T 1p22_A 169 ------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-MLN-------TLIHHCEAVLHLRFNN---GMMVTC 229 (435)
T ss_dssp ------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-EEE-------EECCCCSCEEEEECCT---TEEEEE
T ss_pred ------EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-EEE-------EEcCCCCcEEEEEEcC---CEEEEe
Confidence 3789999999999 68899999 99999999999554 443 2467899999999973 689999
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~ 351 (487)
+.||.|++||++++.... ....+ .+|...|.+++| +++++++|+ |+.|++||+++ +..+..+
T Consensus 230 s~dg~i~vwd~~~~~~~~-~~~~~-------------~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-~~~~~~~ 292 (435)
T 1p22_A 230 SKDRSIAVWDMASPTDIT-LRRVL-------------VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST-CEFVRTL 292 (435)
T ss_dssp ETTSCEEEEECSSSSCCE-EEEEE-------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-CCEEEEE
T ss_pred eCCCcEEEEeCCCCCCce-eeeEe-------------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-CcEEEEE
Confidence 999999999998865321 01222 346789999999 678999886 59999999997 8888889
Q ss_pred ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccc
Q 011368 352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 431 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 431 (487)
..|...+ .++++ ++++|++|+.||.|++||+.++ .....+.+|...+.++.+ ++..
T Consensus 293 ~~~~~~v---------------~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~----~~~~-- 348 (435)
T 1p22_A 293 NGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF----DNKR-- 348 (435)
T ss_dssp ECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC----CSSE--
T ss_pred cCCCCcE---------------EEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe----cCCE--
Confidence 8887654 47777 5789999999999999999987 557889999999999888 3455
Q ss_pred ccceeeecccce-ecCCCC--C---------ccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEeC
Q 011368 432 LSNLTRGLYRQA-HENSSS--G---------HHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA 487 (487)
Q Consensus 432 ~~~l~~g~~~~~-~~w~~~--~---------~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~~ 487 (487)
+++|+.|+. ++|+.. . ......+|...|.+++| +++.|++++.| .+++|+.
T Consensus 349 ---l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 349 ---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp ---EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred ---EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 899999999 999331 1 34455689999999999 78899999955 5899963
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.5e-30 Score=246.60 Aligned_cols=266 Identities=9% Similarity=-0.013 Sum_probs=174.3
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
|...+....+++++.+||+|+.|++|+|||.++++.. ....+..+.+|.
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~--------- 136 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH--------- 136 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS---------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC---------
Confidence 3334444555567788999999999999999887542 233456788999
Q ss_pred ccccceeEEEEEec------CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 111 EIEEKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 111 ~~~~~I~~v~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
+.|++|+|+|. .++++|++++.|++|+|||+.++.....
T Consensus 137 ---~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-------------------------------- 181 (393)
T 4gq1_A 137 ---NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-------------------------------- 181 (393)
T ss_dssp ---SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------------------------------
T ss_pred ---CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------------------------------
Confidence 99999999762 2688999999999999999987654332
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecC-----------------
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK----------------- 245 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~----------------- 245 (487)
+.+|...|.+++|+|++. +|+++ .|++|++||++++..........
T Consensus 182 ---------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 182 ---------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp ---------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred ---------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 257888999999999874 78888 99999999998654332211000
Q ss_pred CCCCCCCCCcEEEEEEe-cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccc------ccccccceeE
Q 011368 246 PSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF------FTEIIASISD 318 (487)
Q Consensus 246 ~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~------~~~~~~~v~~ 318 (487)
.....+|...+.++.|. |++ ..|++++.|+.+++||+..+... ..+..|......... ...+. ....
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 320 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPNVQGISLFP-SLLG 320 (393)
T ss_dssp -----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSC-CSSC
T ss_pred eeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccccccccccC-ccee
Confidence 01234677889999998 788 99999999999999999886543 233332111111000 01112 2223
Q ss_pred EEEcC-C-CCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368 319 IKFAN-D-GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 395 (487)
Q Consensus 319 v~~s~-~-~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~ 395 (487)
..++| . +.++++|+ |+.|++||+.+ +..+..+..|...+ ++++|||||++||+++.+| +.
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspdG~~LA~as~~G-v~ 383 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQDGSHLAIATEGS-VL 383 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTTSSEEEEEESSE-EE
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCCCCEEEEEeCCC-eE
Confidence 34443 3 34556665 59999999987 66676666676644 6999999999999998775 66
Q ss_pred EEEeC
Q 011368 396 IFSHG 400 (487)
Q Consensus 396 iwd~~ 400 (487)
+|.+.
T Consensus 384 lvrL~ 388 (393)
T 4gq1_A 384 LTRLM 388 (393)
T ss_dssp EEEEG
T ss_pred EEEEe
Confidence 77664
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.6e-30 Score=261.59 Aligned_cols=251 Identities=16% Similarity=0.152 Sum_probs=186.3
Q ss_pred eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (487)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
..+.+|. +.|++++| ++++++|++|+.||.|++||+.++.....
T Consensus 3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~---------------------- 46 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLI---------------------- 46 (753)
T ss_dssp -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEE----------------------
T ss_pred eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccc----------------------
Confidence 4578898 99999999 57899999999999999999985432211
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 251 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 251 (487)
.. +.+|...|++++|+|+ +++|++| .||.|++||+.++. .... ..+.+
T Consensus 47 ----------------------~~-l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-~~~~-----~~~~~ 97 (753)
T 3jro_A 47 ----------------------DT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-WSQI-----AVHAV 97 (753)
T ss_dssp ----------------------EE-ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE-EEEE-----EEECC
T ss_pred ----------------------ee-ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc-cccc-----ccccC
Confidence 11 3789999999999988 9999999 99999999999543 1111 13567
Q ss_pred CCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC------
Q 011368 252 LTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN------ 323 (487)
Q Consensus 252 ~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~------ 323 (487)
|...|.+++|+|+ + .++++++.||.|++||++++.... ...+ .+|...|.+++|+|
T Consensus 98 h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~--~~~~-------------~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 98 HSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PIII-------------DAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp CSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC--CEEE-------------ECCSSCEEEEEECCCC----
T ss_pred CCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc--eeEe-------------ecCCCceEEEEecCcccccc
Confidence 9999999999999 8 999999999999999999874221 1222 33578999999999
Q ss_pred -------CCCEEEEEe-CCeEEEEeCCCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCC---CCEEEEEc
Q 011368 324 -------DGQHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATGS 389 (487)
Q Consensus 324 -------~~~~l~s~~-d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~~~l~sg~ 389 (487)
++.++++|+ ||.|++||++... .....+.+|...+ ++++|+|+ +++|++|+
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---------------~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEECCCCSSSEEEEEEE
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---------------EEEEeccCCCCCCEEEEEe
Confidence 588899886 5999999998633 4455666777644 69999999 89999999
Q ss_pred CCCcEEEEEeCCCCc----eeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368 390 YSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 448 (487)
Q Consensus 390 ~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~ 448 (487)
.||.|++||+.++.. .......|...+.+++++| ++.. +++|+.|+. ++|+.
T Consensus 227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~-----l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNV-----LALSGGDNKVTLWKE 283 (753)
T ss_dssp SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT--TTCC-----EEEECSSSCEECCBC
T ss_pred cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC--CCCE-----EEEEcCCCEEEEEec
Confidence 999999999998632 1222233455555555555 3444 555555555 55543
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.4e-28 Score=236.70 Aligned_cols=280 Identities=7% Similarity=0.038 Sum_probs=210.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
....+.+++|+|++.++++++.++.|++||+.+++.. .......+.+|.
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~----------------------~~~~~~~~~~~~--------- 169 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV----------------------RLSPPEKYKKKL--------- 169 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE----------------------EECCCHHHHTTC---------
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe----------------------eecCcccccccC---------
Confidence 3455779999998888888888999999998877541 000001345676
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..|.+++| ++++.++++++.|+.|++||+.+++....
T Consensus 170 ---~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~-------------------------------------- 206 (433)
T 3bws_A 170 ---GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKAT-------------------------------------- 206 (433)
T ss_dssp ---CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEE--------------------------------------
T ss_pred ---CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEE--------------------------------------
Confidence 88999999 57889999999999999999988765443
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+..|...+.+++|+|+++.++ ++ .|+.|++||+++ +..... +. ....+.+++|+|++ ..
T Consensus 207 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~-------~~-~~~~~~~~~~~~~g-~~ 267 (433)
T 3bws_A 207 ---------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRK-------TD-KIGLPRGLLLSKDG-KE 267 (433)
T ss_dssp ---------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEE-------CC-CCSEEEEEEECTTS-SE
T ss_pred ---------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEE-------ec-CCCCceEEEEcCCC-CE
Confidence 256788899999999999885 55 799999999984 444433 22 23458999999999 88
Q ss_pred EEEEe--------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEE
Q 011368 269 LAYSS--------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKL 338 (487)
Q Consensus 269 l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~i 338 (487)
+++++ .|+.|++||+++++.. ..+. |...+..++|+|+++.++. +. ++.|++
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLI----DTIG--------------PPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEE----EEEE--------------EEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEE----eecc--------------CCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 88887 5889999999987643 2222 1357889999999986654 44 599999
Q ss_pred EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC---------------CCcEEEEEeCCCC
Q 011368 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---------------SNLLRIFSHGVGS 403 (487)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~---------------dg~i~iwd~~~~~ 403 (487)
||+.+ ++.+..+...... .+++|+|+|++|++++. ||.|++||+.+++
T Consensus 330 ~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 330 YDLKE-KKVQKSIPVFDKP----------------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EETTT-TEEEEEEECSSSE----------------EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EECCC-CcEEEEecCCCCC----------------CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 99986 7777666533221 58999999999988876 5799999998763
Q ss_pred ceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec--CCe
Q 011368 404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN--GNS 481 (487)
Q Consensus 404 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s--~~~ 481 (487)
. ...+. ....+.+++|+|||++|++++ ++.
T Consensus 393 ~-~~~~~-----------------------------------------------~~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 393 V-KEFWE-----------------------------------------------AGNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp E-EEEEE-----------------------------------------------CSSSEEEEEECTTSCEEEEEETTTTE
T ss_pred E-EEEec-----------------------------------------------CCCCCceEEEcCCCCEEEEEECCCCe
Confidence 2 21111 112567999999999998765 566
Q ss_pred EEEEe
Q 011368 482 LFFHY 486 (487)
Q Consensus 482 ~~i~~ 486 (487)
+++|.
T Consensus 425 i~v~~ 429 (433)
T 3bws_A 425 IRVYR 429 (433)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=4.8e-27 Score=222.78 Aligned_cols=309 Identities=11% Similarity=0.080 Sum_probs=217.4
Q ss_pred ccccCcEEEEEEcCCCCEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
+.+...+.+++|+|+|++| ++++.|+.|++||..+++. ...+..+
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAG------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECS-------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------------EEEEECC-------
Confidence 3344569999999999977 6777899999999877653 2334433
Q ss_pred cccccccceeEEEEEecCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..+.+++| +|++++|+.+ +.++.|++||+.+++....
T Consensus 74 ------~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~---------------------------------- 111 (391)
T 1l0q_A 74 ------SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGT---------------------------------- 111 (391)
T ss_dssp ------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEE----------------------------------
T ss_pred ------CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEE----------------------------------
Confidence 46899999 5788877554 5679999999998875543
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
..+...+.+++|+|+++.+ +++ .++.|++||+.+ ++....+ .. ...+.+++|+|+
T Consensus 112 --------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~-------~~-~~~~~~~~~~~d 168 (391)
T 1l0q_A 112 --------------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTV-------SV-GRSPKGIAVTPD 168 (391)
T ss_dssp --------------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEE-------EC-CSSEEEEEECTT
T ss_pred --------------EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEE-------ec-CCCcceEEECCC
Confidence 2234568999999999987 567 899999999984 4444332 22 345799999999
Q ss_pred CCCEE-EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----CCeEEEE
Q 011368 265 YCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLW 339 (487)
Q Consensus 265 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d~~i~iw 339 (487)
+ ..+ ++++.++.|++||+++++.. ..+.. ...+.+++|+|++++|++++ ++.|++|
T Consensus 169 g-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 169 G-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp S-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred C-CEEEEEeCCCCEEEEEECCCCeEE----EEEec--------------CCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 9 666 67778999999999987643 33333 35789999999999888764 4999999
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEE-EEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 418 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 418 (487)
|+.+ ++.+..+..+... .+++|+|++++| ++++.|+.|++||+.++ .....+..+..+...
T Consensus 230 d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~~~~~~~~ 291 (391)
T 1l0q_A 230 DTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAVGKNPYAS 291 (391)
T ss_dssp ETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEECC
T ss_pred ECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEECCcCCCcc
Confidence 9987 7777777766543 489999999987 67789999999999987 456677766655321
Q ss_pred ---ce------------EeeCCccccccc---cceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEe
Q 011368 419 ---PI------------LQAAPRARRSSL---SNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 477 (487)
Q Consensus 419 ---~~------------~~~~~~~~~~~~---~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~ 477 (487)
+. |+.........+ ..+...+.+.. .+|+.+.... .....+ ...|+|+|.+.+..
T Consensus 292 ~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~--~~~~~~--~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 292 GQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS--SKKQNP--THTYSETGIYTVRL 365 (391)
T ss_dssp SSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE--ECSSSC--EECCSSCEEEEEEE
T ss_pred ceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc--cCcCCC--eEEeCCCceEEEEE
Confidence 11 221100000000 11455555665 7885543221 122222 35799999887643
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.7e-28 Score=229.20 Aligned_cols=259 Identities=15% Similarity=0.169 Sum_probs=195.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
...|...|++++|+|++++|++|+.||.|++||+.+++. ..+.+|.
T Consensus 82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----------------------------~~~~~~~------ 127 (368)
T 3mmy_A 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA----------------------------IQIAQHD------ 127 (368)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------------EEEEECS------
T ss_pred eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc----------------------------eeecccc------
Confidence 345899999999999999999999999999999887753 2355677
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|.+++|++++++.+|++++.|+.|++||+.+++.....
T Consensus 128 ------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------------------------------- 167 (368)
T 3mmy_A 128 ------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL---------------------------------- 167 (368)
T ss_dssp ------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE----------------------------------
T ss_pred ------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE----------------------------------
Confidence 8899999988889999999999999999999987654431
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
.. ...+.++.+.+ ..++++ .++.+++|+++........+ ...+...+.++.+.+..
T Consensus 168 -------------~~-~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~- 224 (368)
T 3mmy_A 168 -------------QL-PERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRI------ESPLKHQHRCVAIFKDK- 224 (368)
T ss_dssp -------------EC-SSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEEC------CCSCSSCEEEEEEEECT-
T ss_pred -------------ec-CCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhc------cccccCCCceEEEcccC-
Confidence 22 23566666653 467777 99999999999655544432 12344456677776654
Q ss_pred CE----EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368 267 NL----LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 341 (487)
Q Consensus 267 ~~----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~ 341 (487)
.. +++++.||.|++||++..... .....+..|... .......+|...|.+++|+|++++|++++ ||.|++||+
T Consensus 225 ~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 225 QNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSN-GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp TSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC-----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecc-cccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 44 999999999999999986321 122455554221 11122234455899999999999999986 699999999
Q ss_pred CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
.+ ++++..+..|...+ ++++|+|+|++|++++.|+..+.|++.+
T Consensus 303 ~~-~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 303 DA-RTKLKTSEQLDQPI---------------SACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp TT-TEEEEECCCCSSCE---------------EEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred CC-CcEEEEecCCCCCc---------------eEEEECCCCCeEEEEecccccccccccC
Confidence 97 88888888887754 6999999999999999998666666543
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-28 Score=232.78 Aligned_cols=259 Identities=8% Similarity=0.021 Sum_probs=193.3
Q ss_pred cccCcEEEEEEcCCCCEE-EEEecCCcEEEEEee--CCcCCCCcccchhhhhccccccccCCCcceeEeeec--CCCccc
Q 011368 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF 104 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l-~~g~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~ 104 (487)
.|.+.|++++|+|++++| ++|+.||.|+||++. +++. ...+. .|.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~--- 149 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------------LKLRKRFCFS--- 149 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------------EEEEEEEECS---
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------------eeeeecccCC---
Confidence 467789999999999996 899999999999998 5543 23343 455
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..|.+++| +|++.+|++++.|+.|++|++.++.....
T Consensus 150 ---------~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~-------------------------------- 186 (450)
T 2vdu_B 150 ---------KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKF-------------------------------- 186 (450)
T ss_dssp ---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------------
T ss_pred ---------CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccc--------------------------------
Confidence 78999999 68899999999999999999987653310
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCC---CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
+.. .+.+|...|++++|+|+ +++|++| .|+.|++||+.++. ....+ +.+|...|.+++
T Consensus 187 ----------~~~-~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~------~~~h~~~v~~~~ 248 (450)
T 2vdu_B 187 ----------TQE-PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-IVDKW------LFGHKHFVSSIC 248 (450)
T ss_dssp ----------CCC-CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-CEEEE------CCCCSSCEEEEE
T ss_pred ----------cce-eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-eeeee------ecCCCCceEEEE
Confidence 000 13689999999999999 9999999 99999999998544 33221 457999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccc-cC-----------ccccccccccceeEEEEcCCCCEE
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HG-----------SKSFFTEIIASISDIKFANDGQHL 328 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~-----------~~~~~~~~~~~v~~v~~s~~~~~l 328 (487)
|+ ++ .+|++++.|+.|++||+++++.. ..+..+... +. ...........|.+++|+|++++|
T Consensus 249 ~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 249 CG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 99 88 99999999999999999998754 334321100 00 000001234679999999999999
Q ss_pred EEEe--CCeEEEEeC--CCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC------CCcEE
Q 011368 329 LSRD--YMNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLR 395 (487)
Q Consensus 329 ~s~~--d~~i~iwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~------dg~i~ 395 (487)
+++. ++.|++|++ .. + ..+..+..+. .+ ++++|+|++.++++++. +..|.
T Consensus 323 ~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~~-~v---------------~~~~~~~~~~~v~~~~~~~~~~~~~~i~ 385 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQ-KGDLALKQIITFPY-NV---------------ISLSAHNDEFQVTLDNKESSGVQKNFAK 385 (450)
T ss_dssp EEEETTCSEEEEEEECSSS-TTCEEEEEEEECSS-CE---------------EEEEEETTEEEEEECCTTCCSSCCCSEE
T ss_pred EEEECCCCeEEEEEeccCC-CCceeeccEeccCC-ce---------------EEEEecCCcEEEEEecccCCCCCCcceE
Confidence 9875 499999999 43 4 4556666662 22 59999996544444443 55689
Q ss_pred EEEeCCC
Q 011368 396 IFSHGVG 402 (487)
Q Consensus 396 iwd~~~~ 402 (487)
+|.+...
T Consensus 386 v~~~~~~ 392 (450)
T 2vdu_B 386 FIEYNLN 392 (450)
T ss_dssp EEEEETT
T ss_pred EEEEEcC
Confidence 9988654
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=7.4e-27 Score=221.50 Aligned_cols=224 Identities=10% Similarity=0.118 Sum_probs=173.2
Q ss_pred CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (487)
Q Consensus 45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~ 124 (487)
.++++++.|+.|++||+.+++. ...+..|. .+.+++| +
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~---------------------------~~~~~~~~-------------~~~~~~~--s 40 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV---------------------------TATIPVGS-------------NPMGAVI--S 40 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE---------------------------EEEEECSS-------------SEEEEEE--C
T ss_pred EEEEEcCCCCEEEEEECCCCeE---------------------------EEEeecCC-------------CcceEEE--C
Confidence 4678888999999999887654 45566554 4899999 6
Q ss_pred CCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 125 PNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 125 ~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
++++++ ++++.|+.|++||+.+++.... ..+
T Consensus 41 ~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------------------------------------------------~~~ 72 (391)
T 1l0q_A 41 PDGTKVYVANAHSNDVSIIDTATNNVIAT------------------------------------------------VPA 72 (391)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEE------------------------------------------------EEC
T ss_pred CCCCEEEEECCCCCeEEEEECCCCeEEEE------------------------------------------------EEC
Confidence 788876 6677999999999988876543 122
Q ss_pred CCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE-EEEeCCCeEEE
Q 011368 204 DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRL 280 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~i 280 (487)
...+.+++|+|+++.|++ + .++.|++||+.++ +....+ . +...+.+++|+|++ +.+ ++++.++.|++
T Consensus 73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~-------~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTV-------K-TGKSPLGLALSPDG-KKLYVTNNGDKTVSV 142 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE-------E-CSSSEEEEEECTTS-SEEEEEETTTTEEEE
T ss_pred CCCccceEECCCCCEEEEEECCCCEEEEEECCCC-eEEEEE-------e-CCCCcceEEECCCC-CEEEEEeCCCCEEEE
Confidence 338999999999998755 5 7799999999944 444332 2 33468999999999 766 67888999999
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-EEe-CCeEEEEeCCCCCceeeeeecccccc
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMDSTPVATFKIHEHLR 358 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~ 358 (487)
||+++++.. ..+.. ...+..++|+|++++|+ ++. ++.|++||+++ ++.+..+..+...
T Consensus 143 ~d~~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~- 202 (391)
T 1l0q_A 143 INTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKVEAAP- 202 (391)
T ss_dssp EETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSEE-
T ss_pred EECCCCcEE----EEEec--------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEecCCCc-
Confidence 999987654 44444 24678999999999885 554 49999999987 6666666544322
Q ss_pred cccccccCCCCcceeeEEEEcCCCCEEEEEc---CCCcEEEEEeCCCC
Q 011368 359 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGS 403 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~---~dg~i~iwd~~~~~ 403 (487)
..++|+|++++|++++ .++.|++||+.+++
T Consensus 203 ---------------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 203 ---------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp ---------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred ---------------cceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 5899999999999888 68999999998773
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.7e-28 Score=224.80 Aligned_cols=259 Identities=10% Similarity=0.044 Sum_probs=181.2
Q ss_pred CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD 204 (487)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
+++.++++|+.||+|++||+.+++..... . .
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~-----------------------------------------------~--~ 76 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTI-----------------------------------------------T--T 76 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEE-----------------------------------------------E--E
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEE-----------------------------------------------e--c
Confidence 56789999999999999999988755431 1 3
Q ss_pred CceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC-----CCCCCCCcEEEEEEec--CCCCEEEEEeCCC
Q 011368 205 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-----NMDDLTEVITSAEFHP--IYCNLLAYSSSRG 276 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg 276 (487)
..|.++.++|+ ++++ .|++|++|+.... ..+++.... ...+|...|.+++|+| ++ .++++++.||
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg 149 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQ---ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRG 149 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTE---EEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTC
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCc---eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCC
Confidence 45677778887 7788 9999999987621 111111100 1125668899999999 98 9999999999
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee-eeeec-
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV-ATFKI- 353 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~-~~~~~- 353 (487)
.|++||+++++.. ..... .|...+.+++|+|+|.+|++|+ |+.|++||+++ +..+ ..+..
T Consensus 150 ~i~~wd~~~~~~~----~~~~~------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~~~ 212 (343)
T 3lrv_A 150 TIGFQSYEDDSQY----IVHSA------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-PDQASSRFPVD 212 (343)
T ss_dssp CEEEEESSSSCEE----EEECC------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-TTSCCEECCCC
T ss_pred cEEEEECCCCcEE----EEEec------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CCCCccEEecc
Confidence 9999999987643 33322 1245799999999999999985 69999999997 5555 67777
Q ss_pred ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce--eEEEeccCCccc--cceEeeCCcccc
Q 011368 354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEAGKNENR--KPILQAAPRARR 429 (487)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~--~~~~~~~~~~~~ 429 (487)
|...+ ++++|+|++.+|++++.+ .|++||+++++.. ...+..|...+. .++|+| ++++
T Consensus 213 h~~~v---------------~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~ 274 (343)
T 3lrv_A 213 EEAKI---------------KEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD--SGKN 274 (343)
T ss_dssp TTSCE---------------EEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECT--TSSE
T ss_pred CCCCE---------------EEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECC--CCCE
Confidence 77654 699999999999999954 9999999987542 222223444554 377777 6777
Q ss_pred ccccceeeecc-cce-ecCCCCCccccccccCCCeEEEEEcC---CCCEEEEecCCe
Q 011368 430 SSLSNLTRGLY-RQA-HENSSSGHHELSYNLSSKLLHLAWHP---TTNLIACANGNS 481 (487)
Q Consensus 430 ~~~~~l~~g~~-~~~-~~w~~~~~~~~~~~~~~~v~~~~~sp---d~~~la~~s~~~ 481 (487)
|++++. ++. ++|+....... ... .++..++|+| +...|++++.|+
T Consensus 275 -----l~~~s~~d~~i~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 275 -----MIAYSNESNSLTIYKFDKKTKN-WTK-DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp -----EEEEETTTTEEEEEEECTTTCS-EEE-EEEEECCC----CCCCEEEEEEETT
T ss_pred -----EEEecCCCCcEEEEEEcccccc-eEe-cCceeEecCccccccceeEEEecCC
Confidence 888776 777 99943211110 001 4566778888 777777766443
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-26 Score=206.59 Aligned_cols=271 Identities=10% Similarity=0.057 Sum_probs=176.1
Q ss_pred EEEEEEcCCCC---EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 35 VSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 35 V~~~~~s~~~~---~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
+.++-|-.-|- -++++++ ..|++|+..++. ..+.+.+++.|+.. +..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~------------------------~~~~~~~~~~~~~~---v~~~~ 93 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAW------------------------QWEKLYTWHFAEVP---VLQIV 93 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSS------------------------BEEEEEEEECCSSC---EEEEC
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCc------------------------cceeeEEEeccCce---eEEEE
Confidence 66677765442 5666665 589999988762 34556777777621 11111
Q ss_pred cc----------------cceeEEEEEecCC----CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368 112 IE----------------EKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (487)
Q Consensus 112 ~~----------------~~I~~v~~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (487)
.- ..|.+|+| +|+ ++.+++++.+ +++|++.++++...........+..+.+.+ +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~sla~--spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~-d- 167 (356)
T 2w18_A 94 PVPDVYNLVCVALGNLEIREIRALFC--SSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAE-D- 167 (356)
T ss_dssp CCTTCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECT-T-
T ss_pred EcCcccceeeeeeccccccceEEEEE--CCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECC-C-
Confidence 11 36788888 567 7888887744 778888776655442222222222222211 1
Q ss_pred ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC---CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC
Q 011368 172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 247 (487)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 247 (487)
++.+.. +..|...++.++|+| ++..|+++ .|++|+|||+++ ++++..+
T Consensus 168 ---------------------G~~~~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL----- 219 (356)
T 2w18_A 168 ---------------------GGGKEN-QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKM----- 219 (356)
T ss_dssp ---------------------SCEEEE-EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEE-----
T ss_pred ---------------------Cceeee-eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEE-----
Confidence 112222 368888899999998 78999999 999999999995 4455543
Q ss_pred CCCCC---CCcEEEEEEecCCCCEE------------EEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc
Q 011368 248 NMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 312 (487)
Q Consensus 248 ~~~~~---~~~v~~v~~~p~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 312 (487)
.+| ...+.+++|+|+| .++ ++|+.|++|++||..+++.+ ..+... ...+|
T Consensus 220 --~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~~--------~p~Gh 284 (356)
T 2w18_A 220 --HIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLYC--------LPPGQ 284 (356)
T ss_dssp --ECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEEC--------CCTTC
T ss_pred --cCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEee--------ccCCC
Confidence 222 3467888999999 766 56788999999999988654 222110 00133
Q ss_pred ccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 313 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 313 ~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
...+.+..++ +.++++++ |++|+|||+.+ ++.+.++.+|...+. ..++|||||++|++|+.|
T Consensus 285 ~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vafSPDG~~LaSGS~D 347 (356)
T 2w18_A 285 AGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKWSGTDSHLLAGQKD 347 (356)
T ss_dssp CCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEECSSSSEEEEECTT
T ss_pred cceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEECCCCCEEEEEECC
Confidence 4444444444 77899886 69999999997 899999998876431 258999999999999999
Q ss_pred CcEEEEEe
Q 011368 392 NLLRIFSH 399 (487)
Q Consensus 392 g~i~iwd~ 399 (487)
++|+|||+
T Consensus 348 ~TIklWd~ 355 (356)
T 2w18_A 348 GNIFVYHY 355 (356)
T ss_dssp SCEEEEEE
T ss_pred CcEEEecC
Confidence 99999996
No 124
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.6e-26 Score=237.81 Aligned_cols=332 Identities=8% Similarity=0.055 Sum_probs=225.4
Q ss_pred cCcEEEEEEcCCCCEEEEEec-CC-----cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCc---
Q 011368 32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP--- 102 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--- 102 (487)
...|.+++|||||++|++++. |+ .|++||+.+++.. ..+..+..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~ 88 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG 88 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence 446999999999999999998 88 8999999887531 11111110
Q ss_pred ---------ccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---ceeEeeecCCCCceeeeeccccc
Q 011368 103 ---------EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE 170 (487)
Q Consensus 103 ---------~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
.......+.....|.+++| +|||++|++++. +.|++||+.++ ....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~------------------- 146 (741)
T 2ecf_A 89 TETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ------------------- 146 (741)
T ss_dssp ------------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------
T ss_pred cccccchhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------
Confidence 0000000000024788999 689999999886 89999999887 4332
Q ss_pred cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368 171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 250 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 250 (487)
+..|...+.+++|+|||+.|+++.++.|++||+.+ +....+. .
T Consensus 147 -----------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~-g~~~~~~-------~ 189 (741)
T 2ecf_A 147 -----------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLAS-GRQMQLT-------A 189 (741)
T ss_dssp -----------------------------CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTT-TEEEECC-------C
T ss_pred -----------------------------cccCCcccccccCCCCCCEEEEEeCCcEEEEecCC-CCEEEec-------c
Confidence 25677889999999999999999667999999984 4333321 1
Q ss_pred CCCC----------------cEEEEEEecCCCCEEEEEeCCC---------------------------------eEEEE
Q 011368 251 DLTE----------------VITSAEFHPIYCNLLAYSSSRG---------------------------------FVRLV 281 (487)
Q Consensus 251 ~~~~----------------~v~~v~~~p~~~~~l~~~~~dg---------------------------------~i~iw 281 (487)
.+.. .+.+++|+|+| +.|++++.|+ .|.+|
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 1221 14779999999 8888887665 78888
Q ss_pred EccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe------CCeEEEEeCCCCCceeeeeecc
Q 011368 282 DMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------YMNLKLWDIRMDSTPVATFKIH 354 (487)
Q Consensus 282 d~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~------d~~i~iwd~~~~~~~~~~~~~~ 354 (487)
|+.+ ++.. ..... ..|...+..++| |||++|+.+. +..|++||+.+ +.....+..+
T Consensus 269 d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~ 331 (741)
T 2ecf_A 269 SPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHET 331 (741)
T ss_dssp CSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEE
T ss_pred ECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcC
Confidence 8887 6532 11111 124578999999 9999998642 26899999987 6666655544
Q ss_pred cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccc-eEeeCCcccccccc
Q 011368 355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAAPRARRSSLS 433 (487)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ 433 (487)
... .+..+..++|+|||+++++++.||.++||.+..... ...+..+...+..+ .++| +++.
T Consensus 332 ~~~-----------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~--dg~~---- 393 (741)
T 2ecf_A 332 SPT-----------WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE--KAGL---- 393 (741)
T ss_dssp CSS-----------CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET--TTTE----
T ss_pred CCC-----------cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC--CCCE----
Confidence 321 000013789999999999999999888988874333 66777777777776 4887 4543
Q ss_pred ceeeecccc--e-ecCCC---CCccccccccCCCeEEEEEcCCCCEEEEecCC-----eEEEEe
Q 011368 434 NLTRGLYRQ--A-HENSS---SGHHELSYNLSSKLLHLAWHPTTNLIACANGN-----SLFFHY 486 (487)
Q Consensus 434 ~l~~g~~~~--~-~~w~~---~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-----~~~i~~ 486 (487)
.++++..++ . ++|.. +.....+.. ...+..++|+|||+.|+....+ .++++.
T Consensus 394 l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp EEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 035555554 4 78832 222333333 6678899999999998865422 366654
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=6.9e-26 Score=222.32 Aligned_cols=321 Identities=8% Similarity=0.045 Sum_probs=230.2
Q ss_pred EEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeE
Q 011368 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (487)
Q Consensus 39 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~ 118 (487)
+|+|++.++++++.|++|.+||..+++. +.++..+. . +..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------------~~~i~~g~------------~-~~~ 183 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY------------A-VHI 183 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECST------------T-EEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------------EEEEecCc------------c-cce
Confidence 4899999999999999999999887754 35555332 2 789
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEc--cccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecccee
Q 011368 119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (487)
Q Consensus 119 v~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (487)
++| +|++++|++++.|++|++||+ .+++....
T Consensus 184 v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~-------------------------------------------- 217 (543)
T 1nir_A 184 SRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAE-------------------------------------------- 217 (543)
T ss_dssp EEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEE--------------------------------------------
T ss_pred EEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEE--------------------------------------------
Confidence 999 689999999999999999999 66554332
Q ss_pred eeecccCCCceeEEEeCC----CCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCC---CCC-CcEEEEEEecCCC
Q 011368 197 KVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLT-EVITSAEFHPIYC 266 (487)
Q Consensus 197 ~~~~~~~~~~v~~i~~s~----~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~-~~v~~v~~~p~~~ 266 (487)
..+...+..++|+| +|++++++ .+++|.+||..+ .+++..+........ -|. ..+.++.++|+++
T Consensus 218 ----i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 218 ----IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp ----EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred ----EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 12345679999999 99999887 589999999984 445555432110111 132 3789999999885
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD 344 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~ 344 (487)
.++++...++.|.+||+.+.+.+. ...+.. ...+..+.|+|+|++++++. +++|.+||+.+
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~~--------------~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t- 355 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLT--VTSIGA--------------APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD- 355 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCE--EEEEEC--------------CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-
T ss_pred EEEEEECCCCeEEEEEecCCCcce--eEEecc--------------CcCccCceECCCCCEEEEEecCCCeEEEEECCC-
Confidence 677777889999999998865331 112221 34678899999999877653 49999999997
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEE-EcCC-CCEEEEEc-CCCcEEEEEeCCC------CceeEEEeccCCc
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGVG------SAGGITVEAGKNE 415 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d-~~~l~sg~-~dg~i~iwd~~~~------~~~~~~~~~~~~~ 415 (487)
++++..+.....+-+ . ..+. ++|+ +..++++. .|++|.+||+.+. ...+.++.+|...
T Consensus 356 g~l~~~i~~g~~ph~--------g-----~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 356 RRLSALVDVGKTPHP--------G-----RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp TEEEEEEECSSSBCC--------T-----TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred CeEEEeeccCCCCCC--------C-----CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 788777764221100 0 0222 4676 66677775 6899999999882 2568899999888
Q ss_pred cccceEeeCCccccccccceeeec-------ccce-ecCCCC--Cccccc---------cccCCCeEEEEEcCCCCEEEE
Q 011368 416 NRKPILQAAPRARRSSLSNLTRGL-------YRQA-HENSSS--GHHELS---------YNLSSKLLHLAWHPTTNLIAC 476 (487)
Q Consensus 416 v~~~~~~~~~~~~~~~~~~l~~g~-------~~~~-~~w~~~--~~~~~~---------~~~~~~v~~~~~spd~~~la~ 476 (487)
+..+.++| +++. |.++. .+.. .+|+.. +..... ..+.+.+.+++|+|||+.|.+
T Consensus 423 ~~~v~~~p--dg~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 495 (543)
T 1nir_A 423 SLFIKTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 495 (543)
T ss_dssp CCCEECCT--TCCE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred ceEEEcCC--CCCc-----EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence 88888888 6666 77765 1445 888443 222111 245678999999999999886
Q ss_pred ec------CCeEEEEeC
Q 011368 477 AN------GNSLFFHYA 487 (487)
Q Consensus 477 ~s------~~~~~i~~~ 487 (487)
+. ++.+.||..
T Consensus 496 s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 496 SVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEECCTTSCCEEEEEET
T ss_pred EeecCCCCCCeEEEEEC
Confidence 62 356888863
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=7.5e-26 Score=217.64 Aligned_cols=239 Identities=9% Similarity=0.071 Sum_probs=188.2
Q ss_pred cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
.|...|.+++|+|+++++++++.|+.|++||+++++. ...+..|.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~---------------------------~~~~~~~~-------- 211 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY---------------------------KATVDLTG-------- 211 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECSS--------
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---------------------------EEEEcCCC--------
Confidence 5778999999999999999999999999999876653 45666777
Q ss_pred cccccceeEEEEEecCCCcEEEE-EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
..+.+++| +++++++++ ++.|+.|++||+.+++....
T Consensus 212 ----~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~------------------------------------ 249 (433)
T 3bws_A 212 ----KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRK------------------------------------ 249 (433)
T ss_dssp ----SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEE------------------------------------
T ss_pred ----CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEE------------------------------------
Confidence 78999999 477887754 55899999999988765443
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c--------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 259 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 259 (487)
..+...+.+++|+|+++.++++ . |+.|++||+.++ +....+ .+...+.++
T Consensus 250 ------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~--------~~~~~~~~~ 308 (433)
T 3bws_A 250 ------------TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-KLIDTI--------GPPGNKRHI 308 (433)
T ss_dssp ------------CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEEE--------EEEECEEEE
T ss_pred ------------ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC-cEEeec--------cCCCCcceE
Confidence 2234458999999999999887 4 789999999844 443332 345578999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC------
Q 011368 260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY------ 333 (487)
Q Consensus 260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d------ 333 (487)
+|+|++..++++++.++.|++||+.+++.. ..+.. ...+.+++|+|+|++|+++..
T Consensus 309 ~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 309 VSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIPV--------------FDKPNTIALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp EECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred EECCCCCEEEEEecCCCEEEEEECCCCcEE----EEecC--------------CCCCCeEEEcCCCCEEEEEecCCCccc
Confidence 999999335566688999999999987643 33332 467899999999998887642
Q ss_pred ----------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCC
Q 011368 334 ----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV 401 (487)
Q Consensus 334 ----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~ 401 (487)
|.|++||+.+ ++.+..+..+... .+++|+|+|++|++++. |+.|++|+++.
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 4999999987 7777777664432 58999999999988764 99999999863
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=7.5e-27 Score=222.42 Aligned_cols=301 Identities=13% Similarity=0.106 Sum_probs=213.9
Q ss_pred cCcEEEEEEcCCC-CEEEEEe----cCC----cEEEEEe--eCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC
Q 011368 32 VDIVSAIEFDKTG-DYLAVGD----RGG----RVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (487)
Q Consensus 32 ~~~V~~~~~s~~~-~~l~~g~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (487)
...|...+|++.| +++++|+ .|| .|+|||+ .+++.. ....+.+|
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-------------------------~~~~~~~~ 116 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-------------------------AQNSYKVN 116 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-------------------------EEEEEEEC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-------------------------eeeEEEcC
Confidence 3578888999988 5666876 467 8999999 776531 12456777
Q ss_pred CcccccccccccccceeEEEEEe------------cCCCcEEEEEeCC------CcEEEEEccccceeEeeecCCCCcee
Q 011368 101 EPEFDYLKSLEIEEKINRVRWCA------------APNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVS 162 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~I~~v~~~~------------~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~ 162 (487)
. ..+..+++.+ .+.+..++.++.+ +.|++||+.++....
T Consensus 117 ~------------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~----------- 173 (415)
T 2hqs_A 117 K------------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFV----------- 173 (415)
T ss_dssp G------------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEE-----------
T ss_pred h------------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEE-----------
Confidence 6 3344444321 1125566666543 799999998654332
Q ss_pred eeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCC---eEEEEEccCCCce
Q 011368 163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQC 238 (487)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~---~i~iwd~~~~~~~ 238 (487)
+.+|...+.+++|+|+|+.|+++ .++ .|++||+.++ +.
T Consensus 174 -------------------------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-~~ 215 (415)
T 2hqs_A 174 -------------------------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-AV 215 (415)
T ss_dssp -------------------------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CE
T ss_pred -------------------------------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-cE
Confidence 25788899999999999999998 664 9999999854 33
Q ss_pred eEEeecCCCCCCCCCCcEEEEEEecCCCCEEE-EEeCCC--eEEEEEccCCccccccceeecccccccCccccccccccc
Q 011368 239 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 315 (487)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 315 (487)
.. +..|...+.+++|+|+| +.|+ +++.++ .|.+||+++++. ..+.. |...
T Consensus 216 ~~--------l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~-------------~~~~ 268 (415)
T 2hqs_A 216 RQ--------VASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQI-----RQVTD-------------GRSN 268 (415)
T ss_dssp EE--------EECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-----EECCC-------------CSSC
T ss_pred EE--------eecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCE-----EeCcC-------------CCCc
Confidence 33 24566789999999999 7777 666555 499999988653 23333 3567
Q ss_pred eeEEEEcCCCCEEEEEeC--C--eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 316 ISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 316 v~~v~~s~~~~~l~s~~d--~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
+.+++|+|||++|+++++ + .|++||+.+ +. ...+..+... +..++|+|||++|++++.+
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~---------------~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQ---------------NQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSE---------------EEEEEECTTSSEEEEEEEC
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCc---------------ccCeEECCCCCEEEEEECc
Confidence 999999999999887653 3 788889875 43 3333333332 2589999999999988764
Q ss_pred ---CcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccc---e-ecCCC-CCccccccccCCCeE
Q 011368 392 ---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ---A-HENSS-SGHHELSYNLSSKLL 463 (487)
Q Consensus 392 ---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~---~-~~w~~-~~~~~~~~~~~~~v~ 463 (487)
..|++||+.+++. ..+..+. .+..++|+| +++. |++++.++ . .+|+. ++....+..+...|.
T Consensus 332 ~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~sp--dg~~-----l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 332 GGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAP--NGTM-----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 401 (415)
T ss_dssp SSCEEEEEEETTTCCE--EECCCSS-SCEEEEECT--TSSE-----EEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred CCceEEEEEECCCCCE--EEecCCC-CcCCeEEcC--CCCE-----EEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCc
Confidence 5899999998744 3455554 788888888 6666 77776665 3 55533 445566778889999
Q ss_pred EEEEcCCCC
Q 011368 464 HLAWHPTTN 472 (487)
Q Consensus 464 ~~~~spd~~ 472 (487)
+++|+|...
T Consensus 402 ~~~~~~~~~ 410 (415)
T 2hqs_A 402 FPAWSPYLH 410 (415)
T ss_dssp EEEECCCCC
T ss_pred CCccccccc
Confidence 999999754
No 128
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=1.5e-24 Score=202.30 Aligned_cols=270 Identities=10% Similarity=0.039 Sum_probs=191.7
Q ss_pred EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
+..+++|. ..|.+++| +|++++|++|+.++ +++|++..++....
T Consensus 12 ~~~~~~h~------------~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~~--------------------- 55 (355)
T 3vu4_A 12 IVPENHVS------------NPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIMS--------------------- 55 (355)
T ss_dssp -------C------------CCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEEE---------------------
T ss_pred ccccccCC------------CceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceeee---------------------
Confidence 34567787 89999999 68999999888775 78999887654322
Q ss_pred ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 251 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 251 (487)
.+...+..+++.++++.++ ++ .|++|++||..++ ..+..+ .
T Consensus 56 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-~~~~~~--------~ 98 (355)
T 3vu4_A 56 ----------------------------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-QDVSRI--------K 98 (355)
T ss_dssp ----------------------------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-EEEEEE--------E
T ss_pred ----------------------------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-cEEEEE--------E
Confidence 1122477888888888875 45 8899999999854 444332 2
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCC-ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
+...|.++.|+++. ++++ .++.|++||+.++ +.+ ..+.. ....+++++ .+++.
T Consensus 99 ~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~----~~~~~----------------~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 99 VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRI----TDDIR----------------FGGVCEFSN--GLLVY 152 (355)
T ss_dssp CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBS----SCCEE----------------EEEEEEEET--TEEEE
T ss_pred CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceee----EEecc----------------CCceEEEEc--cEEEE
Confidence 55689999999864 4444 4789999999987 432 22221 234456666 56665
Q ss_pred --Ee-CCeEEEEeCCCCCc---------------e-eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 331 --RD-YMNLKLWDIRMDST---------------P-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 331 --~~-d~~i~iwd~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
|+ +|.|++||+.+ +. + +..+.+|...+ ++++|+|+|++|++|+.|
T Consensus 153 ~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v---------------~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQS-SGSATTQDQGVQQKAILGKGVLIKAHTNPI---------------KMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EESSCTTCEEEEECCC-------------------CCEEECCCSSCE---------------EEEEECTTSSEEEEEETT
T ss_pred eCCCcCcEEEEEECCC-CCccccccccccccccCcccEEEEccCCce---------------EEEEECCCCCEEEEEeCC
Confidence 33 59999999986 33 2 67778887754 699999999999999999
Q ss_pred Cc-EEEEEeCCCCceeEEEe-c-cCCccccceEeeCCccccccccceeeecccce-ecCCCCCccc----cc--------
Q 011368 392 NL-LRIFSHGVGSAGGITVE-A-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE----LS-------- 455 (487)
Q Consensus 392 g~-i~iwd~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~----~~-------- 455 (487)
|+ |+|||+.+++ ....+. + |...|.+++|+| ++++ |++++.|+. ++|+...... ..
T Consensus 217 ~~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s~--~~~~-----l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 217 GTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWST--DGSK-----LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp CSEEEEEETTTCC-EEEEEECTTCCSCEEEEEECT--TSCE-----EEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred CCEEEEEECCCCc-EEEEEEcCCCCCcEEEEEECC--CCCE-----EEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 98 9999999884 466676 5 999999999998 6777 999999999 9995432210 00
Q ss_pred -------------cccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368 456 -------------YNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 486 (487)
Q Consensus 456 -------------~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~ 486 (487)
.........++|+||++.|++++.|+ +++|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 00112236689999999999998665 66664
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=5.6e-24 Score=226.27 Aligned_cols=355 Identities=9% Similarity=0.058 Sum_probs=237.1
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEecC------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC
Q 011368 27 EELQDVDIVSAIEFDKTGDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (487)
Q Consensus 27 ~~~~h~~~V~~~~~s~~~~~l~~g~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (487)
....|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|
T Consensus 47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~----------------------------~~~lt~~ 98 (1045)
T 1k32_A 47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE----------------------------IKRITYF 98 (1045)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE----------------------------EEECCCC
T ss_pred EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC----------------------------eEEcccC
Confidence 345688899999999999999988643 378899987664 2556777
Q ss_pred Ccccccccccccccce-------eEEEEEecCCCcEEEEEeCC------CcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368 101 EPEFDYLKSLEIEEKI-------NRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~I-------~~v~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
. ..+ ..++| +|||+++++++.+ ..|.+|++.+++...+..... ..+.++
T Consensus 99 ~------------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----~~~~~s 160 (1045)
T 1k32_A 99 S------------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA----THILFA 160 (1045)
T ss_dssp C------------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC----SEEEEE
T ss_pred C------------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCc----ceeeeC
Confidence 6 556 89999 6888877777644 357778887776544332211 111111
Q ss_pred c---------------------------------------------------cccccccccCCCCcceeeeeeeeccc-e
Q 011368 168 L---------------------------------------------------AEKNFMNEHNPPSFAHGYHLEWTENM-A 195 (487)
Q Consensus 168 ~---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 195 (487)
+ ++ .++......... ....++... .
T Consensus 161 pG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~--~l~~~~~~g~~ 237 (1045)
T 1k32_A 161 DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFG--QIYSTDLDGKD 237 (1045)
T ss_dssp TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSC--EEEEEETTSCS
T ss_pred CCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCce--EEEEEeCCCCc
Confidence 1 11 111111111100 011111111 1
Q ss_pred eeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCC----CCCCCCCCcEEEEEEe-cCCCCEEE
Q 011368 196 TKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP----SNMDDLTEVITSAEFH-PIYCNLLA 270 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~v~~v~~~-p~~~~~l~ 270 (487)
.+. +..|. .+...+|+|||+.|+++.++.|++|++. ..... .+.... .....|...+.+++|+ |+| +.|+
T Consensus 238 ~~~-l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la 312 (1045)
T 1k32_A 238 LRK-HTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD-TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIA 312 (1045)
T ss_dssp CEE-CCCCC-SSCEEEEEESSSCEEEEETTEEEEECTT-TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEE
T ss_pred ceE-ecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCC-ceEee-eeccCcccccccccccccccceeeecCCCC-CEEE
Confidence 222 23343 4667899999999999988999999995 33332 211000 0011244568899999 999 8888
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc-ceeEEEEcCCCCEEEEEeC-CeEE-EEeCCCCCce
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDY-MNLK-LWDIRMDSTP 347 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~s~~d-~~i~-iwd~~~~~~~ 347 (487)
+++ ++.|.+|++..+.. ..+.. |.. .+..++|+ ||+.|+.+++ +.+. +||+.. +..
T Consensus 313 ~~~-~~~i~~~~~~~~~~-----~~~~~-------------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~ 371 (1045)
T 1k32_A 313 FVS-RGQAFIQDVSGTYV-----LKVPE-------------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GKA 371 (1045)
T ss_dssp EEE-TTEEEEECTTSSBE-----EECSC-------------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CCE
T ss_pred EEE-cCEEEEEcCCCCce-----EEccC-------------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CCc
Confidence 887 78999999887653 22222 244 78999999 9999998765 7888 889875 433
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 427 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 427 (487)
..+..+... +..++|||||++|++++.++.|++||+.+++ ....+..|...+..++|+| ++
T Consensus 372 -~~l~~~~~~---------------~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~Sp--DG 432 (1045)
T 1k32_A 372 -EKFEENLGN---------------VFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISD--NS 432 (1045)
T ss_dssp -EECCCCCCS---------------EEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECT--TS
T ss_pred -eEecCCccc---------------eeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECC--CC
Confidence 333344332 2589999999999999999999999999874 4555668999999999998 77
Q ss_pred ccccccceeeecccc----------e-ecCCCC-CccccccccCCCeEEEEEcCCCCEEEEecCC
Q 011368 428 RRSSLSNLTRGLYRQ----------A-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGN 480 (487)
Q Consensus 428 ~~~~~~~l~~g~~~~----------~-~~w~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~s~~ 480 (487)
+. |++++.+. . .+|+.. ........+...+..++|+|||+.|++++.+
T Consensus 433 ~~-----la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 433 RF-----IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp CE-----EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred Ce-----EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence 76 77666543 4 788443 2345556777888999999999999988753
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=6.2e-24 Score=202.27 Aligned_cols=243 Identities=14% Similarity=0.117 Sum_probs=185.9
Q ss_pred CCEEEEEecC------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccccee
Q 011368 44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (487)
Q Consensus 44 ~~~l~~g~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~ 117 (487)
+..++.++.+ +.|++||+++.. ...+.+|. ..|.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------------------------~~~l~~~~------------~~v~ 182 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN----------------------------QFVVHRSP------------QPLM 182 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS----------------------------CEEEEEES------------SCEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC----------------------------CEEEeCCC------------Ccce
Confidence 5667666654 799999987543 24566677 8899
Q ss_pred EEEEEecCCCcEEEEEeCCC---cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 118 ~v~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
+++| +|+|++|++++.++ .|++||+.+++...+
T Consensus 183 ~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l------------------------------------------ 218 (415)
T 2hqs_A 183 SPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------------------------------ 218 (415)
T ss_dssp EEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE------------------------------------------
T ss_pred eeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe------------------------------------------
Confidence 9999 68999999999875 999999998875433
Q ss_pred eeeeecccCCCceeEEEeCCCCCEEE-Ee-cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 195 ATKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
..|...+.+++|+|||+.|+ ++ .++ .|++||+.++ ... .+..|...+.+++|+|+| +.|+
T Consensus 219 ------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~~--------~l~~~~~~~~~~~~spdg-~~l~ 282 (415)
T 2hqs_A 219 ------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIR--------QVTDGRSNNTEPTWFPDS-QNLA 282 (415)
T ss_dssp ------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEE--------ECCCCSSCEEEEEECTTS-SEEE
T ss_pred ------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CEE--------eCcCCCCcccceEECCCC-CEEE
Confidence 56777899999999999888 55 554 4999999843 332 245677889999999999 8888
Q ss_pred EEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEEeCCC
Q 011368 271 YSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRM 343 (487)
Q Consensus 271 ~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iwd~~~ 343 (487)
+++. ++ .|.+||+.+++. ..+.. +...+..++|+|+|++|++++ + ..|++||+.+
T Consensus 283 ~~s~~~g~~~i~~~d~~~~~~-----~~l~~-------------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 283 FTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp EEECTTSSCEEEEEETTSSCC-----EECCC-------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred EEECCCCCcEEEEEECCCCCE-----EEEec-------------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 8876 45 677778887652 22222 245788999999999998764 3 5899999986
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC---cEEEEEeCCCCceeEEEeccCCccccce
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPI 420 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 420 (487)
+.. ..+..+. .+ .+++|+|||++|++++.++ .|++||+..+ ....+..|.+.+..++
T Consensus 345 -~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~ 404 (415)
T 2hqs_A 345 -GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPA 404 (415)
T ss_dssp -CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEE
T ss_pred -CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCc
Confidence 444 3344333 21 5899999999999988877 7999998743 4678899999999999
Q ss_pred EeeC
Q 011368 421 LQAA 424 (487)
Q Consensus 421 ~~~~ 424 (487)
|+|.
T Consensus 405 ~~~~ 408 (415)
T 2hqs_A 405 WSPY 408 (415)
T ss_dssp ECCC
T ss_pred cccc
Confidence 9984
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=7.4e-25 Score=224.81 Aligned_cols=329 Identities=11% Similarity=0.062 Sum_probs=210.3
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.+.+++|+|||+++++ +.||+|++||+.+++. ...+.+|... .
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---------------------------~~~~~~~~~~---------~ 60 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---------------------------TVLIEGKKIE---------S 60 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---------------------------EEEECTTTTT---------T
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---------------------------EEEecccccc---------c
Confidence 3678999999998876 6899999999988864 2445555400 0
Q ss_pred cceeEEEEEecCCCcEEEEEeCC---------CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..|.+++| +|||++|++++.+ +.+.+||+.+++...+..
T Consensus 61 ~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~------------------------------ 108 (723)
T 1xfd_A 61 LRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP------------------------------ 108 (723)
T ss_dssp TTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC------------------------------
T ss_pred cccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC------------------------------
Confidence 14899999 6899999998764 778899999887532210
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCC--CCCCC---------
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN--MDDLT--------- 253 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~--------- 253 (487)
..+|...+..++|+|||+.|+++.++.|++||+.+ +....+....... +.++.
T Consensus 109 ---------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 109 ---------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ---------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ---------------CccccccccccEECCCCCEEEEEECCeEEEEECCC-CceEEEecCCCCCceECcccceeEEEEec
Confidence 13455668899999999999999668999999985 4444332110000 00010
Q ss_pred CcEEEEEEecCCCCEEEEEeCCC----------------------------------eEEEEEccCCccccccceeeccc
Q 011368 254 EVITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQSALCDHSARILRDA 299 (487)
Q Consensus 254 ~~v~~v~~~p~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~h 299 (487)
..+.+++|+|+| +.|++++.++ .|.+||+.+++.. ..+..+
T Consensus 173 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~----~~l~~~ 247 (723)
T 1xfd_A 173 KTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD----LEMMPP 247 (723)
T ss_dssp SSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC----EECCCC
T ss_pred cCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee----EEeeCC
Confidence 123789999999 8898887543 7888888776532 222221
Q ss_pred ccccCccccccccccceeEEEEcCCCCEEEEEe----C-CeEEEEeCCCCCceeeeeecc-cccccccccccCCCCccee
Q 011368 300 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDK 373 (487)
Q Consensus 300 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d-~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 373 (487)
..+..+...+..++|+|||++|++.. + ..|++||+.+ ++....+..+ ...+. .. .
T Consensus 248 -------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~---------~~--~ 308 (723)
T 1xfd_A 248 -------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLH---------RQ--N 308 (723)
T ss_dssp -------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCC---------CC--C
T ss_pred -------ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEe---------cc--C
Confidence 01122356789999999999887653 1 5799999986 6655554433 22110 00 0
Q ss_pred eEEEEcCCCCEEEE--EcCCC------cEEEEE-eCCCCc-eeEEEeccCCccc-cceEeeCCccccccccceeee-ccc
Q 011368 374 FECSVSGDGLHFAT--GSYSN------LLRIFS-HGVGSA-GGITVEAGKNENR-KPILQAAPRARRSSLSNLTRG-LYR 441 (487)
Q Consensus 374 ~~~~~s~d~~~l~s--g~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~~g-~~~ 441 (487)
..++|||||+.|+. +..++ .|++|| ..++.. ....+..+...+. .+.++| +++. |+.. ..+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp--dg~~-----l~~~~~~~ 381 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE--KGNK-----IYFLSTED 381 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET--TTTE-----EEEEESSS
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC--CCCE-----EEEEEcCC
Confidence 26899999998775 44666 466677 333320 0233333223333 357777 5655 5444 333
Q ss_pred --ce-ecCCC--CC--ccccccc---cCCCeEEEEEcCCCCEEEEec
Q 011368 442 --QA-HENSS--SG--HHELSYN---LSSKLLHLAWHPTTNLIACAN 478 (487)
Q Consensus 442 --~~-~~w~~--~~--~~~~~~~---~~~~v~~~~~spd~~~la~~s 478 (487)
+. ++|.. .. ....+.. +...+..++|+|||++|+...
T Consensus 382 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 382 LPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 45 88832 21 1222222 566788999999999988654
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.2e-23 Score=187.57 Aligned_cols=278 Identities=11% Similarity=0.042 Sum_probs=173.9
Q ss_pred eeEEEEEecCCCc--EEEEEeCCCcEEEEEccccc-eeEeeecC-CCCceeeeeccccccccccccC-CCCcceeeeeee
Q 011368 116 INRVRWCAAPNGS--MFILSTNDKTIKLWKVRDQK-VKKIKEMD-HFPFVSSENTLLAEKNFMNEHN-PPSFAHGYHLEW 190 (487)
Q Consensus 116 I~~v~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 190 (487)
+.++.|- .++.+ .+++++ ...|++|+..++. ........ .+.+|..+.+.+..-.++.... +-.........+
T Consensus 42 ~~~~~~~-~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 42 VSAMFWE-RAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEC-----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred Eeeeeec-cCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 4556662 23332 455555 5689999998872 22222222 2334666666553333332221 111111111111
Q ss_pred ecc----ceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 191 TEN----MATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 191 ~~~----~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
... ...... .+|...|..+ ++++++.++ .|+.|++|++...++.... +..|...+..++|+|
T Consensus 120 spd~~~~~~~l~s-~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~~~~~v~~l~fs~ 188 (356)
T 2w18_A 120 SSDDESEKQVLLK-SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFLMPPEETILTFAE 188 (356)
T ss_dssp ------CCEEEEE-EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEECCCSSCEEEEEE
T ss_pred CCCccccccEEEe-CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeee-------eccCCCceeeEEeec
Confidence 111 111111 3344444443 456666663 4999999999655554432 356788888889998
Q ss_pred ---CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-----------
Q 011368 264 ---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL----------- 329 (487)
Q Consensus 264 ---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~----------- 329 (487)
++ ..|++++.|++|+|||+++++.+ +++.+|. .+...+.+++|+|+|++++
T Consensus 189 ~~g~~-~~LaSgS~D~TIkIWDl~TGk~l----~tL~g~~----------~~v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 189 VQGMQ-EALLGTTIMNNIVIWNLKTGQLL----KKMHIDD----------SYQASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp EETST-TEEEEEETTSEEEEEETTTCCEE----EEEECCC-------------CCCEEEEEEETTEEEEEEC--------
T ss_pred cCCCC-ceEEEecCCCcEEEEECCCCcEE----EEEcCCC----------cceeeeEEEEECCCCCEEEEeccCCCccee
Confidence 77 99999999999999999999866 6666531 1134678889999998874
Q ss_pred -EEe-CCeEEEEeCCCCCceeeeee-----cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 330 -SRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 330 -s~~-d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+|+ |++|++||..+ ++.+..+. +|... +.+..+ ++.++++|+.|++|+|||+.++
T Consensus 254 aSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~---------------~lsg~~--sg~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 254 SLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGR---------------FLEGDV--KDHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp ----CCEEEEEEETTT-TEEEEEEEECCCTTCCCC---------------EEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred eccCCCcEEEEEECCC-CEEEEEEEeeccCCCcce---------------eEcccc--CCCEEEEEcCCCcEEEEECCCC
Confidence 454 59999999987 77665542 33221 023344 4889999999999999999998
Q ss_pred CceeEEEeccCCccc-cceEeeCCccccccccceeeecccce-ecCC
Q 011368 403 SAGGITVEAGKNENR-KPILQAAPRARRSSLSNLTRGLYRQA-HENS 447 (487)
Q Consensus 403 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~ 447 (487)
....++.+|...+. .++|+| ++++ |++|+.|+. ++|+
T Consensus 316 -k~l~tL~gH~~~vvs~vafSP--DG~~-----LaSGS~D~TIklWd 354 (356)
T 2w18_A 316 -QCTALLPPVSDQHWSFVKWSG--TDSH-----LLAGQKDGNIFVYH 354 (356)
T ss_dssp -SEEEEECCC--CCCCEEEECS--SSSE-----EEEECTTSCEEEEE
T ss_pred -cEEEEecCCCCCeEEEEEECC--CCCE-----EEEEECCCcEEEec
Confidence 55788999988766 488998 7787 999999999 9994
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1e-23 Score=215.65 Aligned_cols=289 Identities=8% Similarity=0.003 Sum_probs=191.2
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..|.+++| +|+ ..++.+ .++.|++||+.+++...+
T Consensus 82 ~~v~~~~~--spd-~~~~~~-~~~~i~~~d~~~~~~~~l----------------------------------------- 116 (706)
T 2z3z_A 82 FPSFRTLD--AGR-GLVVLF-TQGGLVGFDMLARKVTYL----------------------------------------- 116 (706)
T ss_dssp CCCEEEEE--TTT-TEEEEE-ETTEEEEEETTTTEEEEE-----------------------------------------
T ss_pred cCceeEEE--CCC-CeEEEE-ECCEEEEEECCCCceEEc-----------------------------------------
Confidence 45899999 577 555555 459999999988865443
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCC----CceeEEeecCCC-------CCCCCCCcEEEEEEe
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPS-------NMDDLTEVITSAEFH 262 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~----~~~~~~~~~~~~-------~~~~~~~~v~~v~~~ 262 (487)
..+...+.+++|+|||+.|+++.++.|++||+.+. +....+...... ..+.+...+.++.|+
T Consensus 117 -------~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S 189 (706)
T 2z3z_A 117 -------FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS 189 (706)
T ss_dssp -------ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred -------cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence 34566788999999999999998899999999851 333322100000 000011125789999
Q ss_pred cCCCCEEEEEe---------------------------------CCCeEEEEEccCCccccccceeecccccccCccccc
Q 011368 263 PIYCNLLAYSS---------------------------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 309 (487)
Q Consensus 263 p~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 309 (487)
|+| +.|++++ .+..|.+||+.+++.. .....
T Consensus 190 pDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~~~~----------- 253 (706)
T 2z3z_A 190 PKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YLQTG----------- 253 (706)
T ss_dssp TTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----ECCCC-----------
T ss_pred CCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----eeccC-----------
Confidence 999 9999887 4467999999887532 11111
Q ss_pred cccccceeEEEEcCCCCEEEEEe-CC-----eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC--C
Q 011368 310 TEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG--D 381 (487)
Q Consensus 310 ~~~~~~v~~v~~s~~~~~l~s~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d 381 (487)
..|...+..++|+|||++|+++. ++ .|++||+.+ +.....+....... ....+..++|+| |
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~----------~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH----------YVEPLHPLTFLPGSN 322 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----------CCCCCSCCEECTTCS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----------eECccCCceeecCCC
Confidence 12356799999999999888753 33 899999986 52333332111110 000013689999 9
Q ss_pred CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc-ceEeeCCccccccccceeeecccc--e-ecC--CCCCccccc
Q 011368 382 GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRSSLSNLTRGLYRQ--A-HEN--SSSGHHELS 455 (487)
Q Consensus 382 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~~g~~~~--~-~~w--~~~~~~~~~ 455 (487)
|++|++++.||.++||.+.........+..+...+.. +.++| +++. .++++..++ . .+| +........
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp--dg~~----l~~~~~~~~~~~~~l~~~d~~~~~~~~ 396 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP--KGTR----LYFESTEASPLERHFYCIDIKGGKTKD 396 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT--TSSE----EEEEESSSCTTCBEEEEEETTCCCCEE
T ss_pred CEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC--CCCE----EEEEecCCCCceEEEEEEEcCCCCcee
Confidence 9999999999999999987433456677777766765 67877 4443 034444444 2 555 332222333
Q ss_pred cccCCCeEEEEEcCCCCEEEEec-CC----eEEEEeC
Q 011368 456 YNLSSKLLHLAWHPTTNLIACAN-GN----SLFFHYA 487 (487)
Q Consensus 456 ~~~~~~v~~~~~spd~~~la~~s-~~----~~~i~~~ 487 (487)
..+...+..++|+|||++|+.++ +. .+++|++
T Consensus 397 l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 397 LTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp SCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred ccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 44677899999999999988664 32 3888863
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=1.8e-23 Score=222.42 Aligned_cols=357 Identities=10% Similarity=0.054 Sum_probs=236.3
Q ss_pred ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (487)
..|...+.+++|+++ .++++++.|+.++||.++..... ...+..|.
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~--------------------------~~~l~~~~------- 245 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD--------------------------LRKHTSFT------- 245 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS--------------------------CEECCCCC-------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc--------------------------ceEecCCC-------
Confidence 457888999999998 67778888999999998742210 13344443
Q ss_pred ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC---------CCCceeeeeccccccccccccCC
Q 011368 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD---------HFPFVSSENTLLAEKNFMNEHNP 179 (487)
Q Consensus 109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
.+..++|+ |+|++|+++ .++.|.+|++.......+.... ....+..+.++++++..++....
T Consensus 246 ------~~~~~~~S--pDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~ 316 (1045)
T 1k32_A 246 ------DYYPRHLN--TDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR 316 (1045)
T ss_dssp ------SSCEEEEE--ESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET
T ss_pred ------CcceeeEc--CCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc
Confidence 25667884 688888887 5899999999554443221100 11134556665256655554431
Q ss_pred CCcceeeeeeeeccceeeeecccCCC-ceeEEEeCCCCCEEEEe-cCCeEE-EEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368 180 PSFAHGYHLEWTENMATKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVI 256 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~s~-~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v 256 (487)
. ....|+........+..|.. .+..++|+ ||+.|+++ .+..+. +|++.. +.... +.+|...+
T Consensus 317 ~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~~~--------l~~~~~~~ 381 (1045)
T 1k32_A 317 G-----QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GKAEK--------FEENLGNV 381 (1045)
T ss_dssp T-----EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CCEEE--------CCCCCCSE
T ss_pred C-----EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CCceE--------ecCCccce
Confidence 1 12223322221122356777 89999999 99999998 877888 889884 33222 23677889
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C--
Q 011368 257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-- 333 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-- 333 (487)
..++|+|+| +.|++++.++.|++||+.+++.. ..... |...+..++|+|||++|++++ +
T Consensus 382 ~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~-------------~~~~v~~~~~SpDG~~la~~~~~~~ 443 (1045)
T 1k32_A 382 FAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERS-------------REAMITDFTISDNSRFIAYGFPLKH 443 (1045)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------SSSCCCCEEECTTSCEEEEEEEECS
T ss_pred eeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccC-------------CCCCccceEECCCCCeEEEEecCcc
Confidence 999999999 99999999999999999987643 33333 356789999999999998764 2
Q ss_pred --------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC--
Q 011368 334 --------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-- 403 (487)
Q Consensus 334 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~-- 403 (487)
+.|++||+.+ ++ ...+..+.... ..++|+|||++|+.++.++...+|+.....
T Consensus 444 ~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~ 506 (1045)
T 1k32_A 444 GETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 506 (1045)
T ss_dssp STTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred ccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEecccCCcCcchhccccc
Confidence 3899999986 54 55555554322 479999999999999988777777643221
Q ss_pred ----------------------------------------ceeEEEeccCCccccceEeeCCccccccccceee----e-
Q 011368 404 ----------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTR----G- 438 (487)
Q Consensus 404 ----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~----g- 438 (487)
.....+..|...+..+.++| ++.. +++ |
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~--dg~~-----~~~~~~~g~ 579 (1045)
T 1k32_A 507 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE--SSIL-----IYSVPVHGE 579 (1045)
T ss_dssp CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS--SEEE-----EEECCCCCS
T ss_pred cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC--CCeE-----EEEecccCc
Confidence 11223334445556666665 5554 443 1
Q ss_pred ------cccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368 439 ------LYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 487 (487)
Q Consensus 439 ------~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~~ 487 (487)
+.+.. .+| +........ ....+..++|||||+.|++++.+.+++|.+
T Consensus 580 ~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~v~~~~~S~DG~~l~~~~~~~i~~~d~ 635 (1045)
T 1k32_A 580 FAAYYQGAPEKGVLLKYDVKTRKVTE--VKNNLTDLRLSADRKTVMVRKDDGKIYTFP 635 (1045)
T ss_dssp HHHHHHCCCCCEEEEEEETTTCCEEE--EEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ccccccccCCCceEEEEECCCCcEEE--eecCcceEEECCCCCEEEEEcCCcEEEEeC
Confidence 11222 444 332221111 116788999999999999999889999863
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=5.2e-22 Score=183.58 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=161.4
Q ss_pred EEEcCCCCE-EEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368 38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (487)
Q Consensus 38 ~~~s~~~~~-l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I 116 (487)
..|.+++++ +++++.++.|.+||..+++. ...+..+. ..+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~------------~~~ 43 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------------LNQITLGY------------DFV 43 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECCC------------CEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------------eeeEEccC------------Ccc
Confidence 346666655 66777899999999887754 23334333 456
Q ss_pred eEEEEEecCCCcEEEEEe-CCCcEEEEEccccce-eEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 117 NRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 117 ~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
.++| +|+++++++++ .++.|.+||..+++. ...
T Consensus 44 -~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------------ 78 (331)
T 3u4y_A 44 -DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVA------------------------------------------ 78 (331)
T ss_dssp -EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEE------------------------------------------
T ss_pred -eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEe------------------------------------------
Confidence 8999 67888766665 489999999988875 222
Q ss_pred eeeeecccCCCceeEEEeCCCCCEEEEe-cC-C--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE-
Q 011368 195 ATKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL- 269 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l- 269 (487)
+..+..+..+++|+|++++++++ .+ + .|.+||+.+ +.....+ . ....+.+++|+|+| +++
T Consensus 79 -----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~-~~~~~~~-------~-~~~~~~~~~~spdg-~~l~ 143 (331)
T 3u4y_A 79 -----IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK-NKFISTI-------P-IPYDAVGIAISPNG-NGLI 143 (331)
T ss_dssp -----EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT-TEEEEEE-------E-CCTTEEEEEECTTS-SCEE
T ss_pred -----cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC-CCeEEEE-------E-CCCCccceEECCCC-CEEE
Confidence 13444555559999999999976 44 3 999999984 4444332 1 23446899999999 644
Q ss_pred EEEeCCCe-EEEEEccCCcccccc-ceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368 270 AYSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS 345 (487)
Q Consensus 270 ~~~~~dg~-i~iwd~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~ 345 (487)
++...++. |.+|++......... ...+.. ......++|+|+|++++.+. ++.|++||+.+ +
T Consensus 144 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~ 208 (331)
T 3u4y_A 144 LIDRSSANTVRRFKIDADGVLFDTGQEFISG--------------GTRPFNITFTPDGNFAFVANLIGNSIGILETQN-P 208 (331)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEEEEECS--------------SSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-T
T ss_pred EEecCCCceEEEEEECCCCcEeecCCccccC--------------CCCccceEECCCCCEEEEEeCCCCeEEEEECCC-C
Confidence 45556677 999999864322110 011111 24578999999999776553 49999999986 6
Q ss_pred ce---eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCCC
Q 011368 346 TP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS 403 (487)
Q Consensus 346 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~ 403 (487)
+. +..+...... ..++|+|||++|++++ .++.|.+||+.+++
T Consensus 209 ~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 209 ENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp TSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred cccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 66 5556544332 4899999999776655 57889999998874
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=9.5e-22 Score=192.92 Aligned_cols=308 Identities=13% Similarity=0.070 Sum_probs=200.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEe--eCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
.+.+++|+|||++|++++.|++|++||+ .+++. +.++.. .
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~---------------------------~~~i~~-g---------- 221 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK---------------------------VAEIKI-G---------- 221 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE---------------------------EEEEEC-C----------
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE---------------------------EEEEec-C----------
Confidence 3889999999999999999999999998 55432 344553 2
Q ss_pred cccceeEEEEEecC----CCcEEEEEe-CCCcEEEEEccccceeEeeecC----------CCCceeeeeccccccccccc
Q 011368 112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMD----------HFPFVSSENTLLAEKNFMNE 176 (487)
Q Consensus 112 ~~~~I~~v~~~~~~----~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 176 (487)
..+..++| +| +|+++++++ .+++|.+||..+++........ ..+.+..+.+.+....+++.
T Consensus 222 --~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 222 --IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp --SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred --CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 55789999 67 899999887 5899999999988776654431 12244555555544444444
Q ss_pred cCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368 177 HNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 254 (487)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 254 (487)
......... ...............+...+.++.|+|+|++++++ .+++|.+||..+ +++...+... ...|..
T Consensus 298 ~~~~g~i~v--vd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g---~~ph~g 371 (543)
T 1nir_A 298 VKETGKVLL--VNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVG---KTPHPG 371 (543)
T ss_dssp ETTTTEEEE--EECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECS---SSBCCT
T ss_pred ECCCCeEEE--EEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccC---CCCCCC
Confidence 433322221 11111122221112456678899999999987654 789999999995 4555554321 123544
Q ss_pred cEEEEEEecCCCCEEEEEe-CCCeEEEEEccCCccc---cccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 255 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
....+ ++|++...++++. .|++|.+||+.+.... .+.++.+.. |...+..++++|+|++|++
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~-------------~g~~~~~v~~~pdg~~l~v 437 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG-------------QGGGSLFIKTHPKSSHLYV 437 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SCSCCCCEECCTTCCEEEE
T ss_pred CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc-------------CCCCceEEEcCCCCCcEEE
Confidence 33333 5787426777775 5899999999872110 111244554 3567788999999999999
Q ss_pred Ee--------CCeEEEEeCCCCCcee-eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-----CCCcEEE
Q 011368 331 RD--------YMNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRI 396 (487)
Q Consensus 331 ~~--------d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-----~dg~i~i 396 (487)
+. +++|.+||+.+ .+.. ..+....-. .+. +....+..+.|+|+|+.|+++. .|+.|.|
T Consensus 438 ~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~~-----~~~--~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v 509 (543)
T 1nir_A 438 DTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWA-----DLG--EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV 509 (543)
T ss_dssp CCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHH-----CCC--SSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE
T ss_pred ecCCCCCcccCceEEEEECCC-CCCCeEEeechhhc-----ccC--CCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE
Confidence 75 47999999997 4443 444211000 000 0001236899999999988663 4799999
Q ss_pred EEeCCCCceeEEEecc
Q 011368 397 FSHGVGSAGGITVEAG 412 (487)
Q Consensus 397 wd~~~~~~~~~~~~~~ 412 (487)
||.++++ ++.+++..
T Consensus 510 ~D~~t~~-~~~~i~~~ 524 (543)
T 1nir_A 510 VDDKTLK-LKAVVKDP 524 (543)
T ss_dssp EETTTTE-EEEEECCT
T ss_pred EECCCce-EEEeecCC
Confidence 9999984 45666543
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.5e-23 Score=188.87 Aligned_cols=225 Identities=12% Similarity=0.136 Sum_probs=159.4
Q ss_pred EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCc
Q 011368 49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128 (487)
Q Consensus 49 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~ 128 (487)
.++.|+.|++||+.+++. ..+..|. ..|.+++| +|+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~--spdg~ 54 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNW--SPDGK 54 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEE--CTTSS
T ss_pred CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEE--CCCCC
Confidence 345789999999887653 3344465 78999999 68999
Q ss_pred EEEEEeCCCcEEEEEccc-cceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC-CCc
Q 011368 129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH-DFN 206 (487)
Q Consensus 129 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 206 (487)
+|++++ ++.|++||+.+ ++.... ...+ ...
T Consensus 55 ~l~~~~-~~~i~~~d~~~~~~~~~~-----------------------------------------------~~~~~~~~ 86 (297)
T 2ojh_A 55 YLLLNS-EGLLYRLSLAGDPSPEKV-----------------------------------------------DTGFATIC 86 (297)
T ss_dssp EEEEEE-TTEEEEEESSSCCSCEEC-----------------------------------------------CCTTCCCB
T ss_pred EEEEEc-CCeEEEEeCCCCCCceEe-----------------------------------------------cccccccc
Confidence 998876 78999999988 765433 1233 467
Q ss_pred eeEEEeCCCCCEEEEe-cC--CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE-EEeCCCeEEEEE
Q 011368 207 INSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVD 282 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~iwd 282 (487)
+.+++|+|+++.|+++ .+ +...+|.++........ +..+ ..+.+++|+|++ +.|+ +++.++.++||+
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEEEEEEEETTEEEEEE
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEEEEEECCCCceEEEE
Confidence 8999999999999987 33 45555555422222222 2222 348899999999 7666 778899999998
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeeeecccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPK 360 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 360 (487)
++..... ...+.. +...+.++.|+|+|++|+.+. ++.+++|++...+..+..+..+...+
T Consensus 158 ~~~~~~~---~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-- 219 (297)
T 2ojh_A 158 MDIDSGV---ETRLTH-------------GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD-- 219 (297)
T ss_dssp EETTTCC---EEECCC-------------SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE--
T ss_pred EECCCCc---ceEccc-------------CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc--
Confidence 7532111 122222 356789999999999888653 58899998874355566666554422
Q ss_pred cccccCCCCcceeeEEEEcCCCCEEEEEcCC-----------CcEEEEEeCCCC
Q 011368 361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLRIFSHGVGS 403 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-----------g~i~iwd~~~~~ 403 (487)
..++|+|+|++|++++.+ +.|++||+.+++
T Consensus 220 -------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 220 -------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp -------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred -------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 589999999999988876 569999998764
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=9.4e-22 Score=183.50 Aligned_cols=254 Identities=9% Similarity=0.009 Sum_probs=178.7
Q ss_pred cccCcEEEEEEcCCCCEEEEEec-------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (487)
.....+..++|+|+|++|++++. ++.|.+||..+++. ...+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~-- 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------------TQAIHND-- 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------------EEEEEES--
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------------EEEEecC--
Confidence 34567889999999999888774 56899999887753 2223221
Q ss_pred ccccccccccccceeEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 103 ~~~~~~~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
..+..++| ++++++++ +...++.|.+||..+++...........
T Consensus 89 -----------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------------------- 133 (353)
T 3vgz_A 89 -----------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK---------------------- 133 (353)
T ss_dssp -----------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC----------------------
T ss_pred -----------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc----------------------
Confidence 34678899 57888555 4556899999999988765442211000
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEE
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 258 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 258 (487)
. ........+.+++|+|+++.++++ .++.|.+||..+ ......+ ..+...+.+
T Consensus 134 ---------------~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-~~~~~~~-------~~~~~~~~~ 189 (353)
T 3vgz_A 134 ---------------R-TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-IKLKTAI-------QNTGKMSTG 189 (353)
T ss_dssp ---------------C-CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-TEEEEEE-------CCCCTTCCC
T ss_pred ---------------c-ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-CceEEEe-------cCCCCccce
Confidence 0 000111236889999999987775 378899999984 4444332 223445778
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeE
Q 011368 259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNL 336 (487)
Q Consensus 259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i 336 (487)
++|+|++ +.+++++.++.|.+||+.+++.. ..+... ..++...+..++|+|+|+++++++ + +.|
T Consensus 190 ~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~---------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 255 (353)
T 3vgz_A 190 LALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLL---------DDGKEHFFINISLDTARQRAFITDSKAAEV 255 (353)
T ss_dssp CEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECC---------CSSSCCCEEEEEEETTTTEEEEEESSSSEE
T ss_pred EEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcC---------CCCCCcccceEEECCCCCEEEEEeCCCCEE
Confidence 9999999 99999999999999999987654 232220 011245678899999999887664 3 999
Q ss_pred EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCCC
Q 011368 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS 403 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~ 403 (487)
.+||+.+ ++.+..+..... ..++|+|+|+++++++ .++.|.+||+.+++
T Consensus 256 ~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 256 LVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 9999987 777776665432 2799999999665554 78999999998773
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2.1e-21 Score=180.25 Aligned_cols=280 Identities=14% Similarity=0.121 Sum_probs=179.1
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecC-CcEEEEEee--CCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
.+.|...+.+++|+|+|++|++++.+ +.|.+|+++ +++. +.+..+..+
T Consensus 33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~~---- 83 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------------TFAAESALP---- 83 (343)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------------EEEEEEECS----
T ss_pred eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------------eeccccccC----
Confidence 34567789999999999999988876 999999997 3321 222333322
Q ss_pred ccccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 105 DYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..+..++| +++++++++++ .++.|.+||+..+......
T Consensus 84 ---------~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------ 122 (343)
T 1ri6_A 84 ---------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV------------------------------ 122 (343)
T ss_dssp ---------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEE------------------------------
T ss_pred ---------CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccccc------------------------------
Confidence 45789999 68888887765 4889999999533211110
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEe--ecCCCCCCCCCCcEEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMDDLTEVITSA 259 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~v~~v 259 (487)
.. ......+.+++|+|+++.++++ .++.|.+||+...+...... .. .......+.++
T Consensus 123 -------------~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~ 183 (343)
T 1ri6_A 123 -------------DV--VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----TTVEGAGPRHM 183 (343)
T ss_dssp -------------EE--ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----ECSTTCCEEEE
T ss_pred -------------cc--ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc----ccCCCCCcceE
Confidence 00 1223458899999999977765 79999999998534332211 00 01223468899
Q ss_pred EEecCCCCEEEEEe-CCCeEEEEEccC--CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CC
Q 011368 260 EFHPIYCNLLAYSS-SRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YM 334 (487)
Q Consensus 260 ~~~p~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~ 334 (487)
+|+|++ +++++++ .++.|.+||+.. ++.. ....... .+.. ......+..++|+|+|++|+++. ++
T Consensus 184 ~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~---~~~~----~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 184 VFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDM---MPEN----FSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp EECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEEC---SCTT----CCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred EECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccc---cCcc----ccccCCccceEECCCCCEEEEEecCCC
Confidence 999999 7665554 789999999964 3211 0011111 0000 00124577899999999887543 59
Q ss_pred eEEEEeCCCC---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC--CCCc-eeE
Q 011368 335 NLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG--VGSA-GGI 407 (487)
Q Consensus 335 ~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~--~~~~-~~~ 407 (487)
.|++||+... .+.+..+..+... ..++|+|+|++|++++ .++.|.+|++. ++.. ...
T Consensus 254 ~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 254 LITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 9999999731 2233333333321 4899999999888887 67999999665 4422 233
Q ss_pred EEeccCCccccceEee
Q 011368 408 TVEAGKNENRKPILQA 423 (487)
Q Consensus 408 ~~~~~~~~v~~~~~~~ 423 (487)
.+... .....+++.+
T Consensus 318 ~~~~g-~~p~~i~~~~ 332 (343)
T 1ri6_A 318 RYAVG-QGPMWVVVNA 332 (343)
T ss_dssp EEECS-SSCCEEEEEE
T ss_pred ccccC-CCCeeEEEEc
Confidence 33332 2334555555
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=6.5e-22 Score=203.48 Aligned_cols=308 Identities=10% Similarity=0.030 Sum_probs=196.9
Q ss_pred cceeEEEEEecCCCcEEEEEeC-CC-----cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTN-DK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..|..++| +|||++|++++. |+ .|++||+.+++........... +++..+....
T Consensus 37 ~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~---------~~~~~~~~~~--------- 96 (741)
T 2ecf_A 37 PTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL---------PGTETLSDEE--------- 96 (741)
T ss_dssp CCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------
T ss_pred CCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc---------cccccccchh---------
Confidence 56899999 689999999988 88 8999999988766543211100 0111110000
Q ss_pred eeeeccceeeee-cccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCC--ceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 188 LEWTENMATKVY-PHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
...+.. .......+.+++|+|||+.|+++.++.|++||+.++. .. ..+..+...+.+++|+|+
T Consensus 97 ------~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~--------~~l~~~~~~~~~~~~SPD 162 (741)
T 2ecf_A 97 ------KARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV--------RQLTHGEGFATDAKLSPK 162 (741)
T ss_dssp ----------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC--------CBCCCSSSCEEEEEECTT
T ss_pred ------hhhhhhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE--------EEcccCCcccccccCCCC
Confidence 000000 0011244789999999999999955999999998541 22 235567788999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCccccccceeeccccccc--C-ccccccccccceeEEEEcCCCCEEEEEe-CC------
Q 011368 265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH--G-SKSFFTEIIASISDIKFANDGQHLLSRD-YM------ 334 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~--~-~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~------ 334 (487)
| +.|++++. +.|.+||+.+++.. +....+.... . ......+....+..+.|||||++|++++ ++
T Consensus 163 G-~~la~~~~-~~i~~~d~~~g~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~ 236 (741)
T 2ecf_A 163 G-GFVSFIRG-RNLWVIDLASGRQM----QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQ 236 (741)
T ss_dssp S-SEEEEEET-TEEEEEETTTTEEE----ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEE
T ss_pred C-CEEEEEeC-CcEEEEecCCCCEE----EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceE
Confidence 9 99988874 58999999887532 2222210000 0 0000000012257899999999998764 33
Q ss_pred ---------------------------eEEEEeCCCCCceeeeee--cccccccccccccCCCCcceeeEEEEcCCCCEE
Q 011368 335 ---------------------------NLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 385 (487)
Q Consensus 335 ---------------------------~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 385 (487)
.|++||+.+.++...... .+... +..++| |||++|
T Consensus 237 ~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~-pDg~~l 300 (741)
T 2ecf_A 237 KRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY---------------LARVNW-RDPQHL 300 (741)
T ss_dssp EEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE---------------EEEEEE-EETTEE
T ss_pred ecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE---------------EEEEEe-CCCCEE
Confidence 788888864122222221 12221 258999 999999
Q ss_pred EEEcC-----CCcEEEEEeCCCCceeEEEeccCC----ccccceEeeCCccccccccceeeecccce-ecC--C-CCCcc
Q 011368 386 ATGSY-----SNLLRIFSHGVGSAGGITVEAGKN----ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHH 452 (487)
Q Consensus 386 ~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~-~~~~~ 452 (487)
++++. +..|++||+.+++. ...+..+.. .+..++|+| ++++ +++++.++. ++| + .++ .
T Consensus 301 ~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~~~~g~~~l~~~~~~~~-~ 371 (741)
T 2ecf_A 301 SFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLD--DGSI-----LWSSERTGFQHLYRIDSKGK-A 371 (741)
T ss_dssp EEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECT--TSCE-----EEEECTTSSCEEEEECSSSC-E
T ss_pred EEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECC--CCeE-----EEEecCCCccEEEEEcCCCC-e
Confidence 97654 56899999998854 344444433 456888888 5667 888888887 888 3 233 5
Q ss_pred ccccccCCCeEEE-EEcCCCCEEEE-ecCC---eEEEEe
Q 011368 453 ELSYNLSSKLLHL-AWHPTTNLIAC-ANGN---SLFFHY 486 (487)
Q Consensus 453 ~~~~~~~~~v~~~-~~spd~~~la~-~s~~---~~~i~~ 486 (487)
..+..+...|..+ +|+||++.|++ ++.+ .+.||.
T Consensus 372 ~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 372 AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 5566777788887 59999998764 4444 466774
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=4.5e-21 Score=178.06 Aligned_cols=212 Identities=13% Similarity=0.157 Sum_probs=138.4
Q ss_pred cceeEEEEEecCCCcEEEEEeCC-CcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+.+++| +|++++|++++.+ +.|.+|++. +++......
T Consensus 38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------------------ 79 (343)
T 1ri6_A 38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------------------------------------ 79 (343)
T ss_dssp SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------------------------------------
T ss_pred CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeeccc------------------------------------
Confidence 67889999 6889988888876 999999997 554332210
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
+.. ...+..++|+|+++.++++ .++.|.+||+. .+....... .+. ....+.+++|+|++ +.
T Consensus 80 ---------~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~----~~~-~~~~~~~~~~s~dg-~~ 142 (343)
T 1ri6_A 80 ---------SAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVD----VVE-GLDGCHSANISPDN-RT 142 (343)
T ss_dssp ---------EEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEE----EEC-CCTTBCCCEECTTS-SE
T ss_pred ---------ccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCccccccc----ccc-CCCCceEEEECCCC-CE
Confidence 122 2378899999999988665 58999999995 222222110 112 22347889999999 87
Q ss_pred EEEEe-CCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368 269 LAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD 344 (487)
Q Consensus 269 l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~ 344 (487)
+++++ .++.|.+||+.+ ++........+.. .....+..++|+|+|+++++++ ++.|++|++...
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~ 210 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 210 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred EEEecCCCCEEEEEEecCCCceeeeccccccc------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 77777 899999999987 4321000001111 0124678899999999876553 499999999632
Q ss_pred -Cce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcCCCcEEEEEeCC
Q 011368 345 -STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV 401 (487)
Q Consensus 345 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~dg~i~iwd~~~ 401 (487)
+.. ...+....... .....+..++|+|+|++|+ ++..++.|.+|++..
T Consensus 211 ~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 211 HGNIECVQTLDMMPENF---------SDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp TSCCEEEEEEECSCTTC---------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCcEEEEeeccccCccc---------cccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 221 11221111000 0011224799999999887 455789999999983
No 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=3.6e-22 Score=204.62 Aligned_cols=318 Identities=11% Similarity=0.054 Sum_probs=200.5
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I 116 (487)
+++|+|+|++++++ .|+.|++||+.+++. ...+.+|.. . ...|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---------------------------~~~~~~~~~-----~----~~~~ 62 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---------------------------YTILSNRTM-----K----SVNA 62 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE---------------------------EEEECHHHH-----H----TTTC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---------------------------EEEEccccc-----c----ccce
Confidence 78999999766655 699999999988764 233333320 0 0138
Q ss_pred eEEEEEecCCCcEEEEEeC---------CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 117 NRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 117 ~~v~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.+++| +|||++|++++. ++.|++||+.+++....
T Consensus 63 ~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~----------------------------------- 105 (719)
T 1z68_A 63 SNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG----------------------------------- 105 (719)
T ss_dssp SEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----------------------------------
T ss_pred eeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-----------------------------------
Confidence 89999 689999998876 78999999998875210
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE-----------
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI----------- 256 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v----------- 256 (487)
......+..++|+|||+.|+++.++.|++|++.++. ...+. ..++...|
T Consensus 106 -------------~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~-~~~l~------~~~~~~~v~~g~~~~v~~e 165 (719)
T 1z68_A 106 -------------NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDP-PFQIT------FNGRENKIFNGIPDWVYEE 165 (719)
T ss_dssp -------------SCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSC-CEECC------CCCBTTTEEESSCCHHHHH
T ss_pred -------------eecCcccccceECCCCCEEEEEECCeEEEEeCCCCC-cEEEe------cCCCcCCeEcccccceeee
Confidence 011245888999999999999988899999998443 33321 12222222
Q ss_pred ------EEEEEecCCCCEEEEEeCCC----------------------------------eEEEEEccCCccccccceee
Q 011368 257 ------TSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQSALCDHSARIL 296 (487)
Q Consensus 257 ------~~v~~~p~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~ 296 (487)
.+++|+|+| +.|++++.|. .|++||+.+++... . ..+
T Consensus 166 e~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~-~-~~~ 242 (719)
T 1z68_A 166 EMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG-P-QEV 242 (719)
T ss_dssp HTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC-C-EEC
T ss_pred ecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc-e-eEc
Confidence 489999999 9999887652 78888888765210 0 000
Q ss_pred cccccccCccccccccccceeEEEEcCCCCEEEEEeC-----CeEEEEe----CCCCCceeeee----eccccccccccc
Q 011368 297 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF----KIHEHLRPKLCD 363 (487)
Q Consensus 297 ~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-----~~i~iwd----~~~~~~~~~~~----~~~~~~~~~~~~ 363 (487)
. ....+.+|...+..++|+||++++++..+ ..|++|| +.+ ++....+ ..+...+..
T Consensus 243 ~-------~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~--- 311 (719)
T 1z68_A 243 P-------VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGG--- 311 (719)
T ss_dssp C-------CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSS---
T ss_pred c-------CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEcc---
Confidence 0 00112345778999999999887776432 3588899 765 4444444 234332200
Q ss_pred ccCCCCcceeeEEEEcCCCCEEEE--EcCCC--cEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeec
Q 011368 364 LYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL 439 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~s~d~~~l~s--g~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~ 439 (487)
.. ...+.|+|||+.|+. ...+| .|++|++.+++ ...+..+...+..+.+. ....+ ++++.
T Consensus 312 ----~~---~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~--d~~~i-----~~~~~ 375 (719)
T 1z68_A 312 ----FF---VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV--TQDSL-----FYSSN 375 (719)
T ss_dssp ----SS---CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE--CSSEE-----EEEES
T ss_pred ----cc---CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE--eCCEE-----EEEEe
Confidence 00 015789999996654 44555 46666766553 44555555555565655 23333 44444
Q ss_pred c----cce-ecCCC----CCc-ccccc----ccCCCeEEEEEcCCCCEEEEec
Q 011368 440 Y----RQA-HENSS----SGH-HELSY----NLSSKLLHLAWHPTTNLIACAN 478 (487)
Q Consensus 440 ~----~~~-~~w~~----~~~-~~~~~----~~~~~v~~~~~spd~~~la~~s 478 (487)
. ++. ++|.. +.. ...+. ++...+..++|+||+++++..+
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 4 355 88832 211 11111 2456788899999999887543
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=5.4e-22 Score=203.52 Aligned_cols=290 Identities=11% Similarity=0.064 Sum_probs=187.3
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+.+++| +|+|+++++ +.|++|++||+.+++.....
T Consensus 17 ~~~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~---------------------------------------- 53 (723)
T 1xfd_A 17 IHDPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLI---------------------------------------- 53 (723)
T ss_dssp CCCCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEE----------------------------------------
T ss_pred ccccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEe----------------------------------------
Confidence 45788899 688887765 78999999999998765441
Q ss_pred ceeeeecccCCC---ceeEEEeCCCCCEEEEe-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 194 MATKVYPHAHDF---NINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 194 ~~~~~~~~~~~~---~v~~i~~s~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
..|.. .|.+++|+|||++|+++ .+ +.|++||+.++. ...+ ....+|...+..++
T Consensus 54 -------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l-----~~~~~~~~~~~~~~ 120 (723)
T 1xfd_A 54 -------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-PQSL-----DPPEVSNAKLQYAG 120 (723)
T ss_dssp -------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-CEEC-----CCTTCCSCCCSBCC
T ss_pred -------ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc-eEec-----cCCccccccccccE
Confidence 33433 48999999999999998 53 788999998543 3221 12344555688999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccc---------cceeEEEEcCCCCEEEEE
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASISDIKFANDGQHLLSR 331 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~---------~~v~~v~~s~~~~~l~s~ 331 (487)
|+|+| +.|++++. +.|++||+.+++.. +....+... ..+.++. ..+..++|||||++|+++
T Consensus 121 ~SPdG-~~la~~~~-~~i~~~~~~~g~~~----~~~~~~~~~----~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 121 WGPKG-QQLIFIFE-NNIYYCAHVGKQAI----RVVSTGKEG----VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp BCSST-TCEEEEET-TEEEEESSSSSCCE----EEECCCBTT----TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred ECCCC-CEEEEEEC-CeEEEEECCCCceE----EEecCCCCC----ceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 99999 99998886 79999999887643 222221000 0001111 134789999999999976
Q ss_pred e-CC----------------------------------eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEE
Q 011368 332 D-YM----------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 376 (487)
Q Consensus 332 ~-d~----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
+ ++ .|++||+.+ ++....+..+..... ....+..+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~---------~~~~~~~~ 260 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRM---------REYYITMV 260 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGG---------SSEEEEEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCC---------ccceeEEE
Confidence 4 22 788888875 444444443311000 01123589
Q ss_pred EEcCCCCEEEEEcC----CCcEEEEEeCCCCceeEEEeccCCccc----cceEeeCCccccccccceee--ecccc----
Q 011368 377 SVSGDGLHFATGSY----SNLLRIFSHGVGSAGGITVEAGKNENR----KPILQAAPRARRSSLSNLTR--GLYRQ---- 442 (487)
Q Consensus 377 ~~s~d~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~l~~--g~~~~---- 442 (487)
+|||||++|++.+. +..|++||+.+++........+...+. .+.|+| +++. |+. +..++
T Consensus 261 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~-----l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK--DGRK-----FFFIRAIPQGGRGK 333 (723)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT--TSCS-----EEEEEEECCSSSSC
T ss_pred EEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcC--CCCe-----EEEEEecccCCCcc
Confidence 99999999877643 357999999988543333233444443 778887 6664 443 44555
Q ss_pred e-ecC--C--CCCc---cccccccCCCeEE-EEEcCCCCEEEEec-C---CeEEEEe
Q 011368 443 A-HEN--S--SSGH---HELSYNLSSKLLH-LAWHPTTNLIACAN-G---NSLFFHY 486 (487)
Q Consensus 443 ~-~~w--~--~~~~---~~~~~~~~~~v~~-~~~spd~~~la~~s-~---~~~~i~~ 486 (487)
. ++| + .+.. ...+......+.. ++|+|||+.|+..+ . ..+.||.
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 3 444 4 2223 3333333445555 69999999998655 3 3466664
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=3.3e-21 Score=174.85 Aligned_cols=234 Identities=12% Similarity=0.135 Sum_probs=167.2
Q ss_pred cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeC-CcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...|...|.+++|+|+|++|++++ ++.|++||+.+ ++. .....+|.
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------------~~~~~~~~----- 83 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------------EKVDTGFA----- 83 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------EECCCTTC-----
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------eEeccccc-----
Confidence 456788999999999999999986 78999999987 643 23333442
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
...|.+++| +|++++|++++ .++...||.++ ++....+
T Consensus 84 ------~~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------ 125 (297)
T 2ojh_A 84 ------TICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM------------------------------ 125 (297)
T ss_dssp ------CCBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC------------------------------
T ss_pred ------cccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEEe------------------------------
Confidence 156889999 68999999988 44567777664 3332211
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
.. ...+..++|+|+++.|+ ++ .++.+.+|+++....... .+..+...+.+++
T Consensus 126 ------------------~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~ 179 (297)
T 2ojh_A 126 ------------------TK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-------RLTHGEGRNDGPD 179 (297)
T ss_dssp ------------------CS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-------ECCCSSSCEEEEE
T ss_pred ------------------ec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-------EcccCCCccccce
Confidence 22 23488899999999887 56 899999999753333222 2455677899999
Q ss_pred EecCCCCEEEEEe-CCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C----
Q 011368 261 FHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---- 333 (487)
Q Consensus 261 ~~p~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---- 333 (487)
|+|++ +.|++++ .++.+++|++.. +... ..+.. |...+..+.|+|+|++|++++ +
T Consensus 180 ~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~----~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 180 YSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV----ERITD-------------SAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp ECTTS-SEEEEEECTTSSCEEEEEETTSSCE----EECCC-------------CSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred ECCCC-CEEEEEecCCCCccEEEECCCCCCc----EEEec-------------CCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 99999 8777666 588999998863 2221 33333 356788999999999988763 2
Q ss_pred -------CeEEEEeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 334 -------MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 334 -------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
+.|++||+.+ ++. +..+..|...+ ..++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEecc
Confidence 4699999986 444 33333444432 4789999999999887663
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=9.1e-21 Score=176.43 Aligned_cols=266 Identities=10% Similarity=0.114 Sum_probs=169.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEec---CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.+...+..++|+|+|+ |++++. ++.|.+|++.+++. +.+..+..+.
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~----- 85 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG----- 85 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES-----
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC-----
Confidence 3456678899999999 555543 68999999976642 2334444444
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEcc-ccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
..+..++| +|+|++|++++ .++.|.+|++. ++............
T Consensus 86 -------~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------------------------- 131 (347)
T 3hfq_A 86 -------TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG------------------------- 131 (347)
T ss_dssp -------CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-------------------------
T ss_pred -------CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-------------------------
Confidence 66889999 58899888887 78999999995 33332221100000
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
..+. ...+...+.+++|+|+|+++++. .++.|.+|++...+........ . ......+..++|+|
T Consensus 132 --------~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~---~-~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 132 --------HGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL---T-MEAGFGPRHLVFSP 196 (347)
T ss_dssp --------CCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE---E-CCTTCCEEEEEECT
T ss_pred --------CCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE---E-cCCCCCCceEEECC
Confidence 0000 01234568899999999966666 7899999999843433222100 0 11223578899999
Q ss_pred CCCCEEEE-EeCCCeEEEEEccC--CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEE
Q 011368 264 IYCNLLAY-SSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKL 338 (487)
Q Consensus 264 ~~~~~l~~-~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~i 338 (487)
+| +++++ ...++.|.+|++.. ++.. ....+...... + .....+..++|+|||++|++ .. ++.|.+
T Consensus 197 dg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~------~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 197 DG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPAD------Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp TS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTT------C-CSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred CC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCC------C-CCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 99 75555 55688999999885 3321 11111110000 0 01145889999999998865 44 599999
Q ss_pred EeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-CcEEEEEeC
Q 011368 339 WDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHG 400 (487)
Q Consensus 339 wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~i~iwd~~ 400 (487)
|++...+ ..+..+..+.... ..++|+|||++|++++.+ +.|.+|++.
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9996322 2333343322211 489999999988887754 899999664
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=8.5e-21 Score=175.39 Aligned_cols=253 Identities=10% Similarity=0.095 Sum_probs=169.2
Q ss_pred cCcEEEEEEcCCCCEEEEEec-CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
...+ +++|+|+|++|++++. ++.|.+||..+++.. ...+..+.
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--------------------------~~~~~~~~--------- 83 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--------------------------VVAIQEGQ--------- 83 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--------------------------EEEEEECS---------
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--------------------------EEecccCC---------
Confidence 4456 9999999997776665 889999999877530 23344444
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCC---cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
.+..+++| +|++++++++..++ .|.+||+.+++....
T Consensus 84 ---~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~----------------------------------- 123 (331)
T 3u4y_A 84 ---SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST----------------------------------- 123 (331)
T ss_dssp ---SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEE-----------------------------------
T ss_pred ---CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEE-----------------------------------
Confidence 44555899 68899988555443 899999988875543
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCe-EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
........+++|+|+|++++++ .++. |.+|++...+...... . ........+.+++|+|+
T Consensus 124 -------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~~~~~~~~~~~~spd 186 (331)
T 3u4y_A 124 -------------IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFISGGTRPFNITFTPD 186 (331)
T ss_dssp -------------EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEECSSSSEEEEEECTT
T ss_pred -------------EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---ccccCCCCccceEECCC
Confidence 1223446899999999866654 5678 9999998554432211 0 01123445799999999
Q ss_pred CCCEEEE-EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeC
Q 011368 265 YCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDI 341 (487)
Q Consensus 265 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~ 341 (487)
| +++++ +..++.|.+||+.+++.. .....+.. ...+..++|+|+|++|+++. ++.|.+||+
T Consensus 187 g-~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 187 G-NFAFVANLIGNSIGILETQNPENI-TLLNAVGT--------------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp S-SEEEEEETTTTEEEEEECSSTTSC-EEEEEEEC--------------SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred C-CEEEEEeCCCCeEEEEECCCCccc-ceeeeccC--------------CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 9 75554 456899999999987651 00133333 25678899999999877653 488999999
Q ss_pred CCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCC
Q 011368 342 RMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 402 (487)
Q Consensus 342 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~ 402 (487)
.+ ++. +..+..+-..- .........++|+|||++|++++ .++.|.+||+.+.
T Consensus 251 ~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 251 LS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 86 554 33322220000 00111113689999999886554 5679999999865
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.8e-21 Score=195.87 Aligned_cols=280 Identities=9% Similarity=0.065 Sum_probs=184.2
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
..|.+++|||| ++++.+ .++.|++||+.+++. ..+..+.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~----------------------------~~l~~~~----------- 120 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV----------------------------TYLFDTN----------- 120 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence 56999999999 666655 459999999877643 2334444
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----cceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..+..++| +|+|++|+++ .|+.|++|++.+ ++...+....... + .
T Consensus 121 -~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-~------------~------------- 170 (706)
T 2z3z_A 121 -EETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET-L------------V------------- 170 (706)
T ss_dssp -TCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT-E------------E-------------
T ss_pred -ccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC-e------------E-------------
Confidence 66888999 6899999885 689999999988 6654431111000 0 0
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------------------------------CeEEEEEcc
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD---------------------------------LRINLWNLE 233 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------------------------------~~i~iwd~~ 233 (487)
+ ... . ...+...+.+++|+|||+.|+++ .| ..|++||+.
T Consensus 171 --~--g~~--~-~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~ 243 (706)
T 2z3z_A 171 --Y--GQA--V-HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA 243 (706)
T ss_dssp --E--SSC--C-GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred --c--ccc--h-hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence 0 000 0 12334457899999999999987 32 579999998
Q ss_pred CCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-----eEEEEEccCCccccccceeecccccccCcccc
Q 011368 234 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSF 308 (487)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 308 (487)
+ +....+ .....|...+.+++|+|+| +.|++++.++ .|.+||+.+++... .....+.
T Consensus 244 ~-~~~~~~-----~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~~~~~~~-------- 305 (706)
T 2z3z_A 244 T-GKTVYL-----QTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVR---TLFVETD-------- 305 (706)
T ss_dssp T-TEEEEC-----CCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEE---EEEEEEC--------
T ss_pred C-CceEee-----ccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceee---EEEEccC--------
Confidence 4 333221 1112466789999999999 8898887765 89999999873221 1111100
Q ss_pred ccccccceeEEEEcC--CCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeE-EEEcCCCCE
Q 011368 309 FTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE-CSVSGDGLH 384 (487)
Q Consensus 309 ~~~~~~~v~~v~~s~--~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~~ 384 (487)
......+..+.|+| ||+++++++ ++.+++|++...+..+..+..+...+ .. ++|+|||+.
T Consensus 306 -~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v---------------~~~~~~spdg~~ 369 (706)
T 2z3z_A 306 -KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV---------------TNFAGFDPKGTR 369 (706)
T ss_dssp -SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE---------------EEEEEECTTSSE
T ss_pred -CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE---------------EeeeEEcCCCCE
Confidence 00011246789999 999888875 48888888764366666666554322 34 799999998
Q ss_pred EEEEcC-CC----cEEEEEeCCCCceeEEEeccCCccccceEeeCCcccc
Q 011368 385 FATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 429 (487)
Q Consensus 385 l~sg~~-dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 429 (487)
|+.++. ++ .|+.||+.++. ...+. +...+..++++| +++.
T Consensus 370 l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~sp--dg~~ 414 (706)
T 2z3z_A 370 LYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSP--DGSA 414 (706)
T ss_dssp EEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECT--TSSE
T ss_pred EEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECC--CCCE
Confidence 765554 44 56666766653 23333 566677888887 5655
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=5.2e-21 Score=190.97 Aligned_cols=263 Identities=8% Similarity=-0.029 Sum_probs=186.6
Q ss_pred cceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
.+|.+++| ++||+.|++++. |++++||++.+++...+
T Consensus 22 ~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~l---------------------------------------- 59 (582)
T 3o4h_A 22 VEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKL---------------------------------------- 59 (582)
T ss_dssp SCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEEC----------------------------------------
T ss_pred cchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEee----------------------------------------
Confidence 67999999 578999999886 99999999977665443
Q ss_pred cceeeeecccCC-CceeEEEeCCCCCEEEEe-c---CCeEEEEEccC--CCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 193 NMATKVYPHAHD-FNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 193 ~~~~~~~~~~~~-~~v~~i~~s~~~~~l~s~-~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
..+. ..+..++|+|| ++++++ . +....+|.+.. .+....+ ... ..+...+|+|++
T Consensus 60 --------t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--------~~~-~~~~~~~~s~dg 121 (582)
T 3o4h_A 60 --------NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL--------EAV-KPMRILSGVDTG 121 (582)
T ss_dssp --------CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC--------TTS-CSBEEEEEEECS
T ss_pred --------ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc--------cCC-CCceeeeeCCCC
Confidence 3444 68999999999 777766 4 45566766553 3332221 111 123456888887
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC----CeEEEEe
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY----MNLKLWD 340 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d----~~i~iwd 340 (487)
...+++.+.++.+.+||+.+++.. +.... .. .+++|||||++|+++ .+ +.|++||
T Consensus 122 ~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~--------------~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 122 EAVVFTGATEDRVALYALDGGGLR----ELARL--------------PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp SCEEEEEECSSCEEEEEEETTEEE----EEEEE--------------SS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEecCCCCceEEEccCCcEE----EeecC--------------CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 444455555555669999987642 22222 12 789999999999965 33 6799999
Q ss_pred CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC--cEEEEEeCCCCceeEEEeccCCcccc
Q 011368 341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEAGKNENRK 418 (487)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~ 418 (487)
+.+ ++. ..+..+...+ ..++|||||++|+++..++ .|++||+.+++.. .+..|...+..
T Consensus 182 ~~~-g~~-~~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~ 242 (582)
T 3o4h_A 182 LSS-GGL-RVFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSS 242 (582)
T ss_dssp TTT-CCC-EEECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHH
T ss_pred CCC-CCc-eEeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhh
Confidence 875 443 3555555432 5899999999999888888 8999999987554 77788888888
Q ss_pred ce--------EeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe----EEEE
Q 011368 419 PI--------LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS----LFFH 485 (487)
Q Consensus 419 ~~--------~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~----~~i~ 485 (487)
+. ++| ++++ ++++..++. ++|..+ .... .....|.+++|+ |++++++++.+. +++|
T Consensus 243 ~~~~~~~~~~~sp--dg~~-----~~~~~~~g~~~l~~~g-~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~ 311 (582)
T 3o4h_A 243 YRPTAITWLGYLP--DGRL-----AVVARREGRSAVFIDG-ERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL 311 (582)
T ss_dssp HCCSEEEEEEECT--TSCE-----EEEEEETTEEEEEETT-EEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred hhhccccceeEcC--CCcE-----EEEEEcCCcEEEEEEC-Ceec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence 88 888 5576 888989988 999762 2221 344678899999 999988776432 5555
Q ss_pred e
Q 011368 486 Y 486 (487)
Q Consensus 486 ~ 486 (487)
+
T Consensus 312 d 312 (582)
T 3o4h_A 312 P 312 (582)
T ss_dssp T
T ss_pred c
Confidence 3
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.1e-19 Score=167.15 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=137.7
Q ss_pred cceeEEEEEecCCCcEEEEEeC---CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+..++| +|+|+ |++++. ++.|.+|++.+++...+..
T Consensus 40 ~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~------------------------------------ 80 (347)
T 3hfq_A 40 QNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT------------------------------------ 80 (347)
T ss_dssp SCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE------------------------------------
T ss_pred CCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeee------------------------------------
Confidence 55778999 67888 555443 6899999998776433210
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCC----CCCCCCcEEEEEEecC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN----MDDLTEVITSAEFHPI 264 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~ 264 (487)
+..+...+..++|+|+|++|+++ .++.|.+|++...+....+....... .......+.+++|+|+
T Consensus 81 ---------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd 151 (347)
T 3hfq_A 81 ---------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD 151 (347)
T ss_dssp ---------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred ---------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC
Confidence 13456678899999999988776 68999999997444332221110000 0012345889999999
Q ss_pred CCCEEEEEeCCCeEEEEEcc-CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeC
Q 011368 265 YCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDI 341 (487)
Q Consensus 265 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~ 341 (487)
| +++++...++.|.+||+. +++... ...+..+ ....+..++|+|||++|++++ ++.|++|++
T Consensus 152 g-~l~v~~~~~~~v~~~~~~~~g~~~~--~~~~~~~------------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 216 (347)
T 3hfq_A 152 N-RLAVIDLGSDKVYVYNVSDAGQLSE--QSVLTME------------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKY 216 (347)
T ss_dssp S-CEEEEETTTTEEEEEEECTTSCEEE--EEEEECC------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred C-cEEEEeCCCCEEEEEEECCCCcEEE--eeeEEcC------------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 9 766666678999999998 443210 0111110 023567899999999777653 489999998
Q ss_pred CCC-Cce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcCCCcEEEEEeCC
Q 011368 342 RMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV 401 (487)
Q Consensus 342 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~dg~i~iwd~~~ 401 (487)
... +.. +..+....... .....+..++|+|||++|+ +...++.|.+|++..
T Consensus 217 ~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 217 DTQTGAFTQLGIVKTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp ETTTTEEEEEEEEESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred cCCCCceEEeeeeeecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 742 222 12222111100 0001235899999999874 555689999999974
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=7e-21 Score=190.02 Aligned_cols=271 Identities=14% Similarity=0.061 Sum_probs=179.6
Q ss_pred cCcEEEEEEcCCCCEEEEEec-CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
..+|++++|+|||++||+++. ||+++||++++++. ..+..|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~--------- 63 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREP--------- 63 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSC---------
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeeccc---------
Confidence 457999999999999999886 99999999976643 2233332
Q ss_pred ccccceeEEEEEecCCCcEEEEEeC---CCcEEEEEccc--c-ceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--Q-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
...+..++| +|| ++++++.. +...++|.+.. . ....+
T Consensus 64 --~~~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l-------------------------------- 106 (582)
T 3o4h_A 64 --INSVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL-------------------------------- 106 (582)
T ss_dssp --CSEECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC--------------------------------
T ss_pred --ccccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCccccc--------------------------------
Confidence 146899999 566 67776664 55667776654 2 11111
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCE--EEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCET--FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~--l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
.. ...+...+|+|+++. ++++.++.+.+||+.+ +....+. .+.. .+++|+
T Consensus 107 ----------------~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~~~~l~--------~~~~--~~~~~s 158 (582)
T 3o4h_A 107 ----------------EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDG-GGLRELA--------RLPG--FGFVSD 158 (582)
T ss_dssp ----------------TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEET-TEEEEEE--------EESS--CEEEEE
T ss_pred ----------------cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccC-CcEEEee--------cCCC--ceEEEC
Confidence 11 112335577777753 4445555556999984 4443332 1222 789999
Q ss_pred cCCCCEEEEEeCC----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CC--e
Q 011368 263 PIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM--N 335 (487)
Q Consensus 263 p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~--~ 335 (487)
|+| +.|++++.+ +.|.+||+.+++. +.+.. |...+..++|||||++|++++ ++ .
T Consensus 159 pDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~-------------~~~~~~~~~~SpDG~~l~~~~~~~~~~ 219 (582)
T 3o4h_A 159 IRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDS-------------GEGSFSSASISPGMKVTAGLETAREAR 219 (582)
T ss_dssp EET-TEEEEEEEEETTEEEEEEEETTTCCC-----EEECC-------------SSCEEEEEEECTTSCEEEEEECSSCEE
T ss_pred CCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeec-------------CCCccccceECCCCCEEEEccCCCeeE
Confidence 999 999988876 7899999988763 33333 356789999999999999765 46 8
Q ss_pred EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368 336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 415 (487)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 415 (487)
|++||+.+ +... .+..+...+.... ..+....+|+|||.++++++.|+.++||++ ++. .. .....
T Consensus 220 i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~-~~---~~~~~ 284 (582)
T 3o4h_A 220 LVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARREGRSAVFID--GER-VE---APQGN 284 (582)
T ss_dssp EEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE-EC---CCSSE
T ss_pred EEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe-ec---cCCCc
Confidence 99999986 5555 5555544321000 000123449999999999999999999999 422 21 33455
Q ss_pred cccceEeeCCccccccccceeeecccce--ecC
Q 011368 416 NRKPILQAAPRARRSSLSNLTRGLYRQA--HEN 446 (487)
Q Consensus 416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~w 446 (487)
+..++++ ++++ +++++.+.. .+|
T Consensus 285 v~~~~~s---dg~~-----l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 285 HGRVVLW---RGKL-----VTSHTSLSTPPRIV 309 (582)
T ss_dssp EEEEEEE---TTEE-----EEEEEETTEEEEEE
T ss_pred eEEEEec---CCEE-----EEEEcCCCCCCeEE
Confidence 6677776 5555 666665544 555
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.1e-20 Score=173.05 Aligned_cols=265 Identities=12% Similarity=0.022 Sum_probs=182.7
Q ss_pred cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC-c
Q 011368 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF-N 206 (487)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 206 (487)
+++++++.++.|.+||+.+++...... .++.. .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------------~~~~~~~ 35 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT----------------------------------------------IADAGPT 35 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------------------CTTCTTC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE----------------------------------------------cCCCCCC
Confidence 478899999999999999887554311 12222 4
Q ss_pred eeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-----------
Q 011368 207 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----------- 273 (487)
Q Consensus 207 v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~----------- 273 (487)
+..++|+|+++.+++ + .++.|.+||+.+.. ....+.... ...+...+.+++|+|+| +.+++++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-eEeeEEcCC--cccccccccceEECCCC-CEEEEEeccccccccccc
Confidence 788999999987655 5 78999999998544 443332110 00012246689999999 8888886
Q ss_pred -CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeee
Q 011368 274 -SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 274 -~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 352 (487)
.++.|.+||+.+++.. ..+.. ...+..++|+|+|++|+++ ++.|++||+.+ ++.+..+.
T Consensus 112 ~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~~ 171 (337)
T 1pby_B 112 VQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDKP 171 (337)
T ss_dssp ECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEEC
T ss_pred ccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeeee
Confidence 5799999999887643 33333 2457889999999988887 68999999986 66666665
Q ss_pred cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC------------------------cEEEEEeCCCCceeEE
Q 011368 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN------------------------LLRIFSHGVGSAGGIT 408 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg------------------------~i~iwd~~~~~~~~~~ 408 (487)
.+.... .+.|+||+++|+..+.++ .|.+||+.+++.....
T Consensus 172 ~~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 172 IQSWEA----------------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp STTTTT----------------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred ccccCC----------------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 443211 346788888766544332 4689999988665555
Q ss_pred EeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCc-cccccccCCCeEEEEEcCCCCEEEEec-CCeEEEE
Q 011368 409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH 485 (487)
Q Consensus 409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~-~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~ 485 (487)
+..+......++++| +++. ++++ ++. .+|+.... ..........+.+++|+|||++|++++ ++.+++|
T Consensus 236 ~~~~~~~~~~~~~s~--dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 236 VRIMDVFYFSTAVNP--AKTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EEECSSCEEEEEECT--TSSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred cCCCCCceeeEEECC--CCCE-----EEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 666666677788887 6665 5665 455 88854322 222333445678999999999888776 4568888
Q ss_pred eC
Q 011368 486 YA 487 (487)
Q Consensus 486 ~~ 487 (487)
.+
T Consensus 307 d~ 308 (337)
T 1pby_B 307 DA 308 (337)
T ss_dssp ET
T ss_pred EC
Confidence 63
No 152
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=1.4e-19 Score=185.41 Aligned_cols=323 Identities=10% Similarity=0.049 Sum_probs=196.7
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
...+++|+|||++|+++ |+.|++||+.+++. ...+.+|... . +.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------~~~~~~~~~~-----~--~~ 61 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------SVFLENSTFD-----E--FG 61 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------EEEECTTTTT-----T--CC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------EEEEechhhh-----h--hc
Confidence 35689999999999986 89999999988864 2445666510 0 00
Q ss_pred cceeEEEEEecCCCcEEEEEeCC---------CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
.....++| +|||++|+.++.+ +.+.+||+.+++...+
T Consensus 62 ~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l-------------------------------- 107 (740)
T 4a5s_A 62 HSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-------------------------------- 107 (740)
T ss_dssp SCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS--------------------------------
T ss_pred ccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc--------------------------------
Confidence 22345788 6899999998876 5567999998875432
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE--------
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-------- 256 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-------- 256 (487)
..+...+...+|||||+.||.+.++.|++|++.++ ...++ +..++...+
T Consensus 108 ----------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~-~~~~l------t~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 108 ----------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL-PSYRI------TWTGKEDIIYNGITDWV 164 (740)
T ss_dssp ----------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS-CCEEC------CSCCBTTTEEESBCCHH
T ss_pred ----------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCC-ceEEE------cCCCCccceecCccccc
Confidence 56677899999999999999998899999999844 33332 122332222
Q ss_pred ---------EEEEEecCCCCEEEEEeCCC------------------------------------eEEEEEccC---Ccc
Q 011368 257 ---------TSAEFHPIYCNLLAYSSSRG------------------------------------FVRLVDMRQ---SAL 288 (487)
Q Consensus 257 ---------~~v~~~p~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~~ 288 (487)
..+.|+|+| +.||.++.|. .|.+||+.+ ++.
T Consensus 165 ~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred ccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 348999999 8888876432 344555554 310
Q ss_pred ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----C-CeEEEEeCCCCCc----e--eeee--eccc
Q 011368 289 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST----P--VATF--KIHE 355 (487)
Q Consensus 289 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d-~~i~iwd~~~~~~----~--~~~~--~~~~ 355 (487)
.. ...+.. ...+.+|...+..++|+|||+.++... + ..|++||+.+ ++ + +..+ ..+.
T Consensus 244 ~~--~~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l~~~~~~ 313 (740)
T 4a5s_A 244 AT--SIQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQHIEMSTT 313 (740)
T ss_dssp CC--EEEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCEEEECSS
T ss_pred ce--EEEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEeeeccCC
Confidence 00 011110 000113567899999999999776542 1 4799999987 44 1 1222 2333
Q ss_pred ccccccccccCCCCcceeeEEEEcCCCCEEE-EEcC-C--CcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccc
Q 011368 356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-S--NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 431 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 431 (487)
..+.. .....+.|+|||+.|+ ..+. + ..|++|++.++.. ..+....-.+..+. .+. ...+
T Consensus 314 ~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~v~~~~-~~d-~~~i-- 377 (740)
T 4a5s_A 314 GWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWEVIGIE-ALT-SDYL-- 377 (740)
T ss_dssp SCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSCEEEEE-EEC-SSEE--
T ss_pred ceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEEEEEEE-EEe-CCEE--
Confidence 32210 0012678999999877 6653 3 3578888876533 23333333333332 232 2333
Q ss_pred ccceeeecc----cce-ecCCC--CCc-cc-ccc----ccCCCeEEEEEcCCCCEEEEecC
Q 011368 432 LSNLTRGLY----RQA-HENSS--SGH-HE-LSY----NLSSKLLHLAWHPTTNLIACANG 479 (487)
Q Consensus 432 ~~~l~~g~~----~~~-~~w~~--~~~-~~-~~~----~~~~~v~~~~~spd~~~la~~s~ 479 (487)
+.++.. .+. ++|.. ... .. .+. .....+..+.|+||+++++....
T Consensus 378 ---~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 378 ---YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp ---EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred ---EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 344433 233 66622 111 11 111 12356789999999998875553
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=6.4e-20 Score=170.70 Aligned_cols=258 Identities=9% Similarity=0.058 Sum_probs=173.4
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I 116 (487)
.++++++++++++++.++.|.+||..+++. ...+..+. ...+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~-----------~~~~ 45 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPD-----------KFGP 45 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSS-----------CCSS
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------EEEEecCC-----------CCCC
Confidence 457888999999999999999999887653 23333221 0246
Q ss_pred eEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368 117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (487)
Q Consensus 117 ~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
..++| ++++++++ +...++.|.+||+.+++..........+
T Consensus 46 ~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~------------------------------------ 87 (349)
T 1jmx_B 46 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------ 87 (349)
T ss_dssp CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred ceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc------------------------------------
Confidence 78999 67887655 5557899999999887755432100000
Q ss_pred eeeecccCCCceeEEEeCCCCCEEEEe-cC------------CeEEEEEccCCCc--eeEEeecCCCCCCCCCCcEEEEE
Q 011368 196 TKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d------------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
......+.+++|+|+|++++++ .+ +.|.+||+.++.. .... ..+...+.+++
T Consensus 88 -----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~ 154 (349)
T 1jmx_B 88 -----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--------FPMPRQVYLMR 154 (349)
T ss_dssp -----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--------EECCSSCCCEE
T ss_pred -----ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--------ccCCCccccee
Confidence 0002347889999999999998 55 9999999985321 1111 12233578899
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc-ccC--------------c--------------------
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHG--------------S-------------------- 305 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~~--------------~-------------------- 305 (487)
|+|+| + +++++. .|.+||+.+++.. ..+..+.. .+. .
T Consensus 155 ~s~dg-~-l~~~~~--~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 155 AADDG-S-LYVAGP--DIYKMDVKTGKYT----VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp ECTTS-C-EEEESS--SEEEECTTTCCEE----EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred ECCCC-c-EEEccC--cEEEEeCCCCcee----ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 99999 7 555543 4999999887644 22222100 000 0
Q ss_pred --------------------cccccccccceeEEEEcC-CCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccc
Q 011368 306 --------------------KSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 364 (487)
Q Consensus 306 --------------------~~~~~~~~~~v~~v~~s~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
...+..+...+..++|+| +|++++++ ++.|.+||+.+ ++.+..+......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~------- 297 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHTY------- 297 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEECSSCC-------
T ss_pred cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEcCCCCc-------
Confidence 000001123567888999 99999988 79999999987 7776666543332
Q ss_pred cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368 365 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 410 (487)
Q Consensus 365 ~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 410 (487)
..++|+|+|++|++++.++.|++||+++++. ...++
T Consensus 298 ---------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~-~~~~~ 333 (349)
T 1jmx_B 298 ---------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK-VKNIK 333 (349)
T ss_dssp ---------CEEEECSSSSCEEEESBSSEEEEEETTTTEE-EEEEE
T ss_pred ---------cceEECCCCCEEEEecCCCeEEEEeccccce-eeeee
Confidence 4899999999999898899999999988743 44443
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=3.6e-19 Score=169.96 Aligned_cols=229 Identities=9% Similarity=0.085 Sum_probs=147.8
Q ss_pred ccccCcEEEEEEcCCCCEEE----EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368 29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l~----~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (487)
+.|...|++++|+|+|++|| +|+.|+.|+|||+.+.... .............+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~----------------~~~~~~~~~~~~~~~~h~--- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE----------------AKQQKRPFAYHKLLKDAG--- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCT----------------TCSSCCCSEEEECCCSGG---
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccC----------------CcCCcceeeeeeccCCCC---
Confidence 45667899999999999999 7889999999998754110 000000122345677788
Q ss_pred ccccccccccceeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
..|.+++|+ |+ +.+|++++.|++|++||+.++.....
T Consensus 150 ---------~~V~~v~~~--p~~~~~las~s~Dg~v~iwD~~~~~~~~~------------------------------- 187 (434)
T 2oit_A 150 ---------GMVIDMKWN--PTVPSMVAVCLADGSIAVLQVTETVKVCA------------------------------- 187 (434)
T ss_dssp ---------GSEEEEEEC--SSCTTEEEEEETTSCEEEEEESSSEEEEE-------------------------------
T ss_pred ---------CceEEEEEC--CCCCCEEEEEECCCeEEEEEcCCCcceee-------------------------------
Confidence 889999995 54 78999999999999999988743221
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
..+|...|++++|+|+|++|++| .|+.|++||++ +. ....+......-..|...|.++.|+
T Consensus 188 ----------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 188 ----------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp ----------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred ----------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEe
Confidence 14688899999999999999999 99999999998 33 2332211111111344589999999
Q ss_pred cCCCCEEEEE-eCCC------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--
Q 011368 263 PIYCNLLAYS-SSRG------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-- 333 (487)
Q Consensus 263 p~~~~~l~~~-~~dg------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-- 333 (487)
+++ .++++. ..+| .+++|+++...... ...+..+..... .+.+....-..+.+-++.+++++++.
T Consensus 250 ~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~~---~~~~~r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 250 GTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPCY---GSCTERQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp ETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSSC---CCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred cCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCCC---CCCCCcCcceeeehhccCCEEEEecCCC
Confidence 987 665443 3443 38999998653110 022222111100 00111222233444477777776642
Q ss_pred CeEEEEeCC
Q 011368 334 MNLKLWDIR 342 (487)
Q Consensus 334 ~~i~iwd~~ 342 (487)
+.|.+....
T Consensus 324 ~dv~vl~~~ 332 (434)
T 2oit_A 324 TEVSILARQ 332 (434)
T ss_dssp SBCEEEEEC
T ss_pred CceeEEEec
Confidence 566666543
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.4e-18 Score=162.62 Aligned_cols=267 Identities=12% Similarity=0.080 Sum_probs=166.9
Q ss_pred ccCcEEEEEEcCCCCEEEEEecC----CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
+...+..++|+|+|++|++++.+ +.|.+|+++...- ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~----- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG----- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence 55677889999999999998875 7999999876311 122333344343
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeE-eeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
.....+++ ++++|++++ .++.|.+|++....... ........
T Consensus 100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~------------------------- 143 (361)
T 3scy_A 100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK------------------------- 143 (361)
T ss_dssp -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC-------------------------
T ss_pred -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc-------------------------
Confidence 44566665 567777665 68899999997543221 10000000
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCc----e-eEEe-ecCCCCCCCCCCcE
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ----C-FNIV-DMKPSNMDDLTEVI 256 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~----~-~~~~-~~~~~~~~~~~~~v 256 (487)
... ......+...+.+++|+|+|++++++ .++.|.+|++..... . +... ... .........+
T Consensus 144 --------g~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 213 (361)
T 3scy_A 144 --------GSG-PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE-AFKVAPGSGP 213 (361)
T ss_dssp --------CCC-SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE-EEECCTTCCE
T ss_pred --------CCC-CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc-ceecCCCCCC
Confidence 000 00012334557899999999976665 689999999885442 1 1100 000 0011234557
Q ss_pred EEEEEecCCCCEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e--
Q 011368 257 TSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-- 332 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~-- 332 (487)
..++|+|+| +++++++ .++.|.+||+.++.... ...+.. ...+......++|+|||++|+++ .
T Consensus 214 ~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 214 RHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred eEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCCCcccEEECCCCCEEEEECCCC
Confidence 899999999 8777777 68999999998764310 111111 11123456899999999988765 3
Q ss_pred CCeEEEEeCCCC-Cc--eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC
Q 011368 333 YMNLKLWDIRMD-ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 400 (487)
Q Consensus 333 d~~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~ 400 (487)
++.|.+|++... +. .+..+.....+ ..++|+|||++|++++ .++.|.+|++.
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~g~~~----------------~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLTGIHP----------------RNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEECSSCC----------------CEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEEcCCCCcEEEeeEecCCCCC----------------ceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 379999999621 33 23333321111 4899999999988887 67899997665
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=3.9e-19 Score=164.44 Aligned_cols=250 Identities=12% Similarity=0.070 Sum_probs=171.2
Q ss_pred CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec-CCCccccccccccccc-ceeEEEEE
Q 011368 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWC 122 (487)
Q Consensus 45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~I~~v~~~ 122 (487)
++|++++.++.|.+||..+++. ...+. ++. . .+..++|
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~- 41 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADA------------GPTPMVPMV- 41 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTC------------TTCCCCEEE-
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------------EEEEEcCCC------------CCCccceEE-
Confidence 4789999999999999877653 23333 221 1 4788999
Q ss_pred ecCCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecc
Q 011368 123 AAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPH 201 (487)
Q Consensus 123 ~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (487)
+|+++++ +++..++.|.+||+.+++......... ..
T Consensus 42 -s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------------------------------------~~ 78 (337)
T 1pby_B 42 -APGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------------------------------------PE 78 (337)
T ss_dssp -CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------------------------------------TT
T ss_pred -cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC------------------------------------------cc
Confidence 6788765 455678899999998887554321000 00
Q ss_pred cCCCceeEEEeCCCCCEEEEe-------------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 202 AHDFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
.+...+.+++|+|+++.++++ .++.|.+||+.+ +.....+ . ....+.+++|+|++ ++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~-------~-~~~~~~~~~~s~dg-~~ 148 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAF-------E-APRQITMLAWARDG-SK 148 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEE-------E-CCSSCCCEEECTTS-SC
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEE-------e-CCCCcceeEECCCC-CE
Confidence 122357789999999988887 369999999984 4444332 1 12346788999999 87
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccc-cc-----cCcc------------------------------------
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ES-----HGSK------------------------------------ 306 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~-----~~~~------------------------------------ 306 (487)
|+++ ++.|.+||+.+++.. ..+..+. .. +...
T Consensus 149 l~~~--~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 149 LYGL--GRDLHVMDPEAGTLV----EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp EEEE--SSSEEEEETTTTEEE----EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred EEEe--CCeEEEEECCCCcEe----eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 7777 688999999987643 2222111 00 0000
Q ss_pred -----------ccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeE
Q 011368 307 -----------SFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 375 (487)
Q Consensus 307 -----------~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
..+..+...+..++|+|+|++++++ ++.|++||+.+ ++.+..+...... .+
T Consensus 223 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~ 284 (337)
T 1pby_B 223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----------------YS 284 (337)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------------CE
T ss_pred EEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----------------ee
Confidence 0011233456679999999999988 69999999986 7776666544332 48
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368 376 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 376 ~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 412 (487)
++|+|||++|++++.++.|++||+.+++. ...+..+
T Consensus 285 ~~~s~dg~~l~~~~~~~~i~v~d~~~~~~-~~~~~~~ 320 (337)
T 1pby_B 285 VNVSTDGSTVWLGGALGDLAAYDAETLEK-KGQVDLP 320 (337)
T ss_dssp EEECTTSCEEEEESBSSEEEEEETTTCCE-EEEEECG
T ss_pred EEECCCCCEEEEEcCCCcEEEEECcCCcE-EEEEEcC
Confidence 99999999999999999999999998843 4445444
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.8e-18 Score=161.81 Aligned_cols=212 Identities=8% Similarity=0.083 Sum_probs=135.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCC----CcEEEEEccc--cceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d----~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..+..++| +|++++|++++.+ +.|.+|++.. ++...+..
T Consensus 50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~--------------------------------- 94 (361)
T 3scy_A 50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNT--------------------------------- 94 (361)
T ss_dssp SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeE---------------------------------
Confidence 56788999 6899999998875 7999999876 44332210
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeE---EeecC---CCCCCCCCCcEEEE
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN---IVDMK---PSNMDDLTEVITSA 259 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~---~~~~~---~~~~~~~~~~v~~v 259 (487)
...+......+++ ++++|+++ .++.|.+|++...+.... ..... +.....+...+.++
T Consensus 95 ------------~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (361)
T 3scy_A 95 ------------QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV 160 (361)
T ss_dssp ------------EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE
T ss_pred ------------eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE
Confidence 1234455677777 77877766 789999999975443211 11000 00111233457889
Q ss_pred EEecCCCCEEEEEe-CCCeEEEEEccCCcc------cccc--ceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 260 EFHPIYCNLLAYSS-SRGFVRLVDMRQSAL------CDHS--ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 260 ~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~------~~~~--~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
+|+|+| +++++++ .++.|.+|++..... +... ...... .+......++|+|||+++++
T Consensus 161 ~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 161 RITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp EECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCEEEEEECTTSSEEEE
T ss_pred EECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCCeEEEEcCCCCEEEE
Confidence 999999 7665555 588999999876431 1000 001111 11345788999999998877
Q ss_pred Ee--CCeEEEEeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC--CCcEEEEEeC
Q 011368 331 RD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHG 400 (487)
Q Consensus 331 ~~--d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~--dg~i~iwd~~ 400 (487)
+. ++.|.+||+.+ +.. +..+...... ......++|+|||++|+++.. ++.|.+|++.
T Consensus 228 ~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~------------~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 228 INEIGGTVIAFRYAD-GMLDEIQTVAADTVN------------AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EETTTCEEEEEEEET-TEEEEEEEEESCSSC------------CCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EcCCCCeEEEEEecC-CceEEeEEEecCCCC------------CCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 65 49999999975 433 2222211110 001248999999999876665 4899999996
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=4.3e-19 Score=169.43 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=152.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...++.+++++++.++++++.++ ++||+....... ... ........... ....+.
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~-------~~~----------~~~~~~~~~~~-------~~~~~~ 90 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ-------NKP----------GDDPNKIVDKV-------QGLLVP 90 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC-------CCT----------TCCTTCEEECC-------CCEEEC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh-------ccc----------ccCcccccccC-------cccccc
Confidence 44689999999999999999887 999886432110 000 00000000000 001112
Q ss_pred cccceeEEEEEecCCCcEEE----EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~----s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
+...|.+++| ++++++|+ +++.|+.|++||+.++....... ..+
T Consensus 91 ~~~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~--~~~---------------------------- 138 (434)
T 2oit_A 91 MKFPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ--KRP---------------------------- 138 (434)
T ss_dssp CSSCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS--CCC----------------------------
T ss_pred CCCcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCcCC--cce----------------------------
Confidence 2377999999 67899999 78899999999998651000000 000
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
....+ .+.+|...|.+++|+|+ +++|+++ .|++|++||+++...... ..+|...|.+++|+|+|
T Consensus 139 -----~~~~~-~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~--------~~~~~~~v~~v~wspdg 204 (434)
T 2oit_A 139 -----FAYHK-LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA--------TLPSTVAVTSVCWSPKG 204 (434)
T ss_dssp -----SEEEE-CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE--------EECGGGCEEEEEECTTS
T ss_pred -----eeeee-ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee--------ccCCCCceeEEEEcCCC
Confidence 00011 13679999999999997 8899999 999999999995532221 24578899999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C------CeEE
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y------MNLK 337 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d------~~i~ 337 (487)
++|++|+.||.|++||++ ++.. ..+..|.. ...+|...|.++.|++++.++++.+ + ..++
T Consensus 205 -~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~~------~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 205 -KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPPF------YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp -SCEEEEETTSCEEEECTT-CCEE----EEECCCTT------CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred -CEEEEEcCCCcEEEEccC-Cccc----ccccCCcc------cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 999999999999999998 3322 33333210 0112345899999999998887532 2 2499
Q ss_pred EEeCCC
Q 011368 338 LWDIRM 343 (487)
Q Consensus 338 iwd~~~ 343 (487)
+|+++.
T Consensus 273 i~~l~~ 278 (434)
T 2oit_A 273 MALLPK 278 (434)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 999975
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=3.9e-19 Score=168.10 Aligned_cols=239 Identities=14% Similarity=0.140 Sum_probs=153.9
Q ss_pred EEEcCCCCEEEEEec-CCc--EEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368 38 IEFDKTGDYLAVGDR-GGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (487)
Q Consensus 38 ~~~s~~~~~l~~g~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (487)
.+|||||++|+.++. +|. |.+||+.+++. .....++. .
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---------------------------~~lt~~~~------------~ 81 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA---------------------------TQLTEGRG------------D 81 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE---------------------------EECCCSSC------------B
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce---------------------------EEeeeCCC------------C
Confidence 789999999998886 674 77778766643 23334444 4
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
.+..++| +|+++.|+.++.++.|++||+.+++...+.
T Consensus 82 ~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~----------------------------------------- 118 (388)
T 3pe7_A 82 NTFGGFL--SPDDDALFYVKDGRNLMRVDLATLEENVVY----------------------------------------- 118 (388)
T ss_dssp CSSSCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEE-----------------------------------------
T ss_pred CccceEE--cCCCCEEEEEeCCCeEEEEECCCCcceeee-----------------------------------------
Confidence 4456778 689999999999999999999988755432
Q ss_pred eeeeecccCCCceeEE--EeCCCCCEEEEe-----------------------cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368 195 ATKVYPHAHDFNINSI--SNNSDCETFVSA-----------------------DDLRINLWNLEISDQCFNIVDMKPSNM 249 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i--~~s~~~~~l~s~-----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 249 (487)
..+...+... .++|+++.++.. .+..|.+||+.++ ....+
T Consensus 119 ------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~l-------- 183 (388)
T 3pe7_A 119 ------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-ESTVI-------- 183 (388)
T ss_dssp ------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-CEEEE--------
T ss_pred ------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-ceEEe--------
Confidence 2223333333 348888888742 3468999999854 33332
Q ss_pred CCCCCcEEEEEEec-CCCCEEEEEeCC------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 250 DDLTEVITSAEFHP-IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 250 ~~~~~~v~~v~~~p-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
..+...+..++|+| +| +.|+....+ ..|.++|...+.. +.+..+. ....+..+.|+
T Consensus 184 ~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~-----------~~~~~~~~~~s 246 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHA-----------EGESCTHEFWV 246 (388)
T ss_dssp EEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCC-----------TTEEEEEEEEC
T ss_pred ecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCC-----------CCcccccceEC
Confidence 23456689999999 98 888877753 3677777765532 2222210 01257788999
Q ss_pred CCCCEEEEEe--C-C---eEEEEeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE------
Q 011368 323 NDGQHLLSRD--Y-M---NLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG------ 388 (487)
Q Consensus 323 ~~~~~l~s~~--d-~---~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg------ 388 (487)
|||+.|+..+ + + .|++||+.+ ++. +..+..+..... ......|+|||+.|+..
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~------------~~~~~~~spdg~~l~~~~~~~~~ 313 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS------------NYDGSLMVGDGSDAPVDVQDDSG 313 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE------------CTTSSEEEEEECCC---------
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee------------cCCCCeEccCCCcceeEeeeccc
Confidence 9999876532 2 2 399999986 443 222222111000 00134799999988854
Q ss_pred ---cCCCcEEEEEeCCCC
Q 011368 389 ---SYSNLLRIFSHGVGS 403 (487)
Q Consensus 389 ---~~dg~i~iwd~~~~~ 403 (487)
..+..|++||+.+++
T Consensus 314 ~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 314 YKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ---CCCCEEEEEETTTTE
T ss_pred cccCCCCEEEEEeccCCc
Confidence 456789999998763
No 160
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=2.6e-18 Score=160.06 Aligned_cols=240 Identities=11% Similarity=0.061 Sum_probs=167.6
Q ss_pred cCcEEEEEEcCCCCEEEEE-ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc-cccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE-FDYLKS 109 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~ 109 (487)
...+..++|+|+|++++.+ ..++.|.+||..+++. ...+..+... .+...
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~~~~~~~~- 139 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV---------------------------KGRLVLDDRKRTEEVR- 139 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE---------------------------EEEEESCCCCCCSSCC-
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee---------------------------EEEEecCCCccccccC-
Confidence 4457789999999966554 5679999999887754 2333332200 00000
Q ss_pred cccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
...+.+++| +++++++++++ .++.|.+||..+++.....
T Consensus 140 ---~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------- 180 (353)
T 3vgz_A 140 ---PLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTAI---------------------------------- 180 (353)
T ss_dssp ---CCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEEE----------------------------------
T ss_pred ---CCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEEe----------------------------------
Confidence 012688999 57888777765 5788999999988755431
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
..+...+.+++|+|+++.++++ .++.|.+||..+. .....+.. ...++...+.+++|+|++
T Consensus 181 -------------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~---~~~~~~~~~~~~~~s~dg- 242 (353)
T 3vgz_A 181 -------------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN-KILSRKKL---LDDGKEHFFINISLDTAR- 242 (353)
T ss_dssp -------------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT-EEEEEEEC---CCSSSCCCEEEEEEETTT-
T ss_pred -------------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC-eEEEEEEc---CCCCCCcccceEEECCCC-
Confidence 2244557889999999999998 9999999999844 44433321 112345568899999999
Q ss_pred CEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCC
Q 011368 267 NLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRM 343 (487)
Q Consensus 267 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~ 343 (487)
+.+++++. ++.|.+||+.+++.. ..+.. .....++|+|+|++++++. ++.|.+||..+
T Consensus 243 ~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 243 QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 76666654 599999999887654 33333 1125689999999766553 59999999987
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
++.+..+.....+ ..++|+|||++|+++..++
T Consensus 304 -~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 304 -YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp -TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred -CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence 7777777655432 5899999999887776654
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=3.2e-18 Score=160.24 Aligned_cols=257 Identities=11% Similarity=0.013 Sum_probs=164.9
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEee-CCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+..++|+|+|++|++++.+ .|.+|++. +++.. .......+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~----------- 82 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG----------- 82 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence 357889999999999999887 99999987 55421 01111111
Q ss_pred cccceeEEEEEecCCCcE--EEEEe-------------CCCcEEEEEccc-cceeEeeecCCCCceeeeecccccccccc
Q 011368 112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~--l~s~~-------------~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (487)
+.+..++| +|+|++ ++++. .++.+.+|++.. ++.....
T Consensus 83 --g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~---------------------- 136 (365)
T 1jof_A 83 --GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV---------------------- 136 (365)
T ss_dssp --SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE----------------------
T ss_pred --CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE----------------------
Confidence 12344677 688884 44543 689999999973 5433210
Q ss_pred ccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEcc-CCCceeEEeecCCCCCCCC
Q 011368 176 EHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE-ISDQCFNIVDMKPSNMDDL 252 (487)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~ 252 (487)
..+...+...+.+++|+|||++++++ .++.|++|+++ ++. ...+... ....+
T Consensus 137 ---------------------~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~~---~~~~~ 191 (365)
T 1jof_A 137 ---------------------QNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-VELVGSV---DAPDP 191 (365)
T ss_dssp ---------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-EEEEEEE---ECSST
T ss_pred ---------------------eeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC-EEEeeeE---ecCCC
Confidence 00001345678999999999988876 57899999997 333 2211100 11224
Q ss_pred CCcEEEEEEecCCCCEEEEEeC-CCeEEEEEcc--CCcccc--ccceeecccccccCcccccccccc------ceeEEE-
Q 011368 253 TEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCD--HSARILRDAAESHGSKSFFTEIIA------SISDIK- 320 (487)
Q Consensus 253 ~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~--~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~------~v~~v~- 320 (487)
...+..++|+|+| +++++++. ++.|.+|++. +++... ..+..+.. .+.+|.. .+..++
T Consensus 192 g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 192 GDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP---------GIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT---------TCCCBCTTTSSBSEEEEEEE
T ss_pred CCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC---------CcCCcccccccccccccEEE
Confidence 5668999999999 88887775 7899999876 343210 00011111 0112222 588999
Q ss_pred EcCCCCEEEEEe--CC-----eEEEEeCCCCCceeee---eecccccccccccccCCCCcceeeEEEEcC---CCCEEEE
Q 011368 321 FANDGQHLLSRD--YM-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFAT 387 (487)
Q Consensus 321 ~s~~~~~l~s~~--d~-----~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~s 387 (487)
|+|||++|+++. .+ .|.+|++...++.... ...+.... ..++|+| ||++|++
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a~sp~~~dg~~l~v 326 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNAVSPCPWSDEWMAI 326 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCCEEECTTCTTEEEE
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------ccceecCCCcCCCEEEE
Confidence 999999988653 23 8999999632443321 22222111 3789999 8999999
Q ss_pred EcCC-CcEEEEEeCCC
Q 011368 388 GSYS-NLLRIFSHGVG 402 (487)
Q Consensus 388 g~~d-g~i~iwd~~~~ 402 (487)
++.+ +.|.+|++...
T Consensus 327 ~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 327 TDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSSCEEEEEEEETT
T ss_pred EEcCCCeEEEEEEchh
Confidence 8865 89999999865
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=8.9e-19 Score=179.43 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=171.6
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecccee
Q 011368 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (487)
Q Consensus 117 ~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (487)
..++| ++++++ +..+.|++|++||+.+++...+.
T Consensus 19 ~~~~~--s~dg~~-~~~~~d~~i~~~~~~~g~~~~~~------------------------------------------- 52 (719)
T 1z68_A 19 FFPNW--ISGQEY-LHQSADNNIVLYNIETGQSYTIL------------------------------------------- 52 (719)
T ss_dssp CCCEE--SSSSEE-EEECTTSCEEEEESSSCCEEEEE-------------------------------------------
T ss_pred CccEE--CCCCeE-EEEcCCCCEEEEEcCCCcEEEEE-------------------------------------------
Confidence 47889 678854 44557999999999998765442
Q ss_pred eeecccCC---CceeEEEeCCCCCEEEEe-c---------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 197 KVYPHAHD---FNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 197 ~~~~~~~~---~~v~~i~~s~~~~~l~s~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
..+. ..+.+++|||||++|+++ . ++.|++||+.++ .... ...+ ...+..++|+|
T Consensus 53 ----~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g-~~~~-----~~~l---~~~~~~~~~SP 119 (719)
T 1z68_A 53 ----SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG-EFVR-----GNEL---PRPIQYLCWSP 119 (719)
T ss_dssp ----CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECC-----SSCC---CSSBCCEEECS
T ss_pred ----ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC-cccc-----ceec---CcccccceECC
Confidence 2222 248899999999999987 5 689999999843 3310 0112 24578899999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccceee-cccccccCccccccccccc---------eeEEEEcCCCCEEEEEe-
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIAS---------ISDIKFANDGQHLLSRD- 332 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~---------v~~v~~s~~~~~l~s~~- 332 (487)
+| +.|+++. ++.|++||+.+++.. +.. .++ ....+.++... ..+++|||||++|++++
T Consensus 120 DG-~~la~~~-~~~i~~~~~~~g~~~----~l~~~~~-----~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~ 188 (719)
T 1z68_A 120 VG-SKLAYVY-QNNIYLKQRPGDPPF----QITFNGR-----ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF 188 (719)
T ss_dssp ST-TCEEEEE-TTEEEEESSTTSCCE----ECCCCCB-----TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred CC-CEEEEEE-CCeEEEEeCCCCCcE----EEecCCC-----cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence 99 8888885 789999999887642 111 110 00011122222 25899999999999864
Q ss_pred C-C---------------------------------eEEEEeCCCCCcee--ee------eecccccccccccccCCCCc
Q 011368 333 Y-M---------------------------------NLKLWDIRMDSTPV--AT------FKIHEHLRPKLCDLYNNDSI 370 (487)
Q Consensus 333 d-~---------------------------------~i~iwd~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~ 370 (487)
+ + .|++||+.+ +... .. +..+...
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~------------- 254 (719)
T 1z68_A 189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYY------------- 254 (719)
T ss_dssp ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEE-------------
T ss_pred CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcce-------------
Confidence 2 2 788899875 4332 11 1123222
Q ss_pred ceeeEEEEcCCCCEEEEEcCC----CcEEEEE----eCCCCceeEEE---eccCCccc-----cceEeeCCccccccccc
Q 011368 371 FDKFECSVSGDGLHFATGSYS----NLLRIFS----HGVGSAGGITV---EAGKNENR-----KPILQAAPRARRSSLSN 434 (487)
Q Consensus 371 ~~~~~~~~s~d~~~l~sg~~d----g~i~iwd----~~~~~~~~~~~---~~~~~~v~-----~~~~~~~~~~~~~~~~~ 434 (487)
+..++||||++++++.... ..|.+|| +.+++.....- ..|...+. .+.|+| +++. -.
T Consensus 255 --~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~---l~ 327 (719)
T 1z68_A 255 --FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY--DAIS---YY 327 (719)
T ss_dssp --EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT--TSSC---EE
T ss_pred --EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC--CCCe---EE
Confidence 2589999998877764432 2488899 76664322221 46777776 788887 5553 00
Q ss_pred eeeecccce-ecC--CC-CCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368 435 LTRGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIACANG 479 (487)
Q Consensus 435 l~~g~~~~~-~~w--~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s~ 479 (487)
+++...++. .+| +. +.....+......|..+.++ |++.|+..+.
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred EEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 334555555 666 32 22233344455567788777 8887776553
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=1.2e-17 Score=169.39 Aligned_cols=297 Identities=9% Similarity=0.016 Sum_probs=184.3
Q ss_pred cccCcEEEEEEcCCCCEEEEE--ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l~~g--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
.|...|..++|++++-+++.. +.++...||....+.. ...+..|.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~l~~~~------ 67 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---------------------------EESALPAP------ 67 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---------------------------EEESSCTT------
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---------------------------cceeCCCC------
Confidence 467889999999887777776 5688999999643321 23344444
Q ss_pred ccccccccee---------EEEEEecCCCcE-EEEEeC-CCcEEEEEcc--c-cceeEeeecCCCCceeeeecccccccc
Q 011368 108 KSLEIEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 108 ~~~~~~~~I~---------~v~~~~~~~~~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
..+. ..+|+.+|||+. |+.++. +..|.++++. + +....+....
T Consensus 68 ------~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~----------------- 124 (662)
T 3azo_A 68 ------WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS----------------- 124 (662)
T ss_dssp ------CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----------------
T ss_pred ------ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----------------
Confidence 2233 556653488988 776553 5566666665 3 4433221000
Q ss_pred ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC----------CeEEEEEccCC-----Cc
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRINLWNLEIS-----DQ 237 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----------~~i~iwd~~~~-----~~ 237 (487)
...|...+.+++|+|||+.|+++ .+ ..|++||+... +.
T Consensus 125 --------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 125 --------------------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp --------------------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred --------------------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 01156778899999999999987 65 58999999852 33
Q ss_pred eeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEEEeCC--------CeEEEEEcc-CCccccccceeecccccccCccc
Q 011368 238 CFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMR-QSALCDHSARILRDAAESHGSKS 307 (487)
Q Consensus 238 ~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~ 307 (487)
.. . +. .+...+..++|+|+| +.|+.++.+ ..|.+||+. ++... ........
T Consensus 179 ~~-~-------l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~~l~~~--------- 239 (662)
T 3azo_A 179 VR-E-------LSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTRTLLGG--------- 239 (662)
T ss_dssp SE-E-------SSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEEEEEEE---------
T ss_pred ee-E-------EEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccEEeCCC---------
Confidence 22 1 33 445677889999999 889887754 379999998 45210 00022222
Q ss_pred cccccccceeEEEEcCCCCEEEEEe-CC--eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE
Q 011368 308 FFTEIIASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 384 (487)
Q Consensus 308 ~~~~~~~~v~~v~~s~~~~~l~s~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 384 (487)
|...+..+.|+|||+++++++ ++ .|++||+.+ ++.......+.... ......++..++|+|++++
T Consensus 240 ----~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 240 ----PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp ----TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCCSEEECTTSCE
T ss_pred ----CCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cceeeccccccccc-------CccccccCceEeEeCCCEE
Confidence 246789999999999776665 35 677777754 44433333222110 0111111247899999999
Q ss_pred EEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC
Q 011368 385 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 446 (487)
Q Consensus 385 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w 446 (487)
+++++. +.++||.+.........+..+...+..+. ++..+..+ +++++.+.. .+|
T Consensus 308 ~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~-s~~~~~~~-----~~~~~~~~~~~i~ 363 (662)
T 3azo_A 308 AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATL-TVSGTRAV-----GVAASPRTAYEVV 363 (662)
T ss_dssp EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEE-EEETTEEE-----EEEEETTEEEEEE
T ss_pred EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEE-ecCCCEEE-----EEEcCCCCCCEEE
Confidence 999999 99999955432223566777766666551 33323333 445555544 666
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=7.3e-18 Score=156.71 Aligned_cols=163 Identities=10% Similarity=0.070 Sum_probs=110.5
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
.+++.++++++.++.|.+||..+++...... .+.
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------------~~~ 41 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCV----------------------------------------------MPD 41 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------------------CSS
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEe----------------------------------------------cCC
Confidence 4678889999999999999999887554311 122
Q ss_pred CCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC------
Q 011368 204 DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------ 275 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------ 275 (487)
...+..++|+|+++.+++ + .++.|.+||+.++ +....+..... -......+.+++|+|+| +++++++.+
T Consensus 42 ~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~~~~~~~~-~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~ 118 (349)
T 1jmx_B 42 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANLSSV-PGEVGRSMYSFAISPDG-KEVYATVNPTQRLND 118 (349)
T ss_dssp CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEESCCS-TTEEEECSSCEEECTTS-SEEEEEEEEEEECSS
T ss_pred CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEEEEEcccc-cccccccccceEECCCC-CEEEEEccccccccc
Confidence 224778999999986654 5 7899999999844 34333211100 00002236789999999 888888865
Q ss_pred ------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee
Q 011368 276 ------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 276 ------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~ 349 (487)
+.|.+||+.+++.. .....+.. ...+.+++|+|+|+ +++++ +.|++||+.+ ++.+.
T Consensus 119 ~~~~~~~~i~~~d~~~~~~~-~~~~~~~~--------------~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~-~~~~~ 180 (349)
T 1jmx_B 119 HYVVKPPRLEVFSTADGLEA-KPVRTFPM--------------PRQVYLMRAADDGS-LYVAG-PDIYKMDVKT-GKYTV 180 (349)
T ss_dssp CEEECCCEEEEEEGGGGGGB-CCSEEEEC--------------CSSCCCEEECTTSC-EEEES-SSEEEECTTT-CCEEE
T ss_pred ccccCCCeEEEEECCCcccc-ceeeeccC--------------CCcccceeECCCCc-EEEcc-CcEEEEeCCC-Cceec
Confidence 89999999886532 11122222 24588899999999 55543 4599999986 66666
Q ss_pred eeec
Q 011368 350 TFKI 353 (487)
Q Consensus 350 ~~~~ 353 (487)
.+..
T Consensus 181 ~~~~ 184 (349)
T 1jmx_B 181 ALPL 184 (349)
T ss_dssp EECS
T ss_pred cccc
Confidence 5543
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1.3e-16 Score=149.24 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=144.8
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEcc-ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..+..++| +|++++|++++.+ .|.+|++. +++.......
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------------------- 79 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------------------- 79 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-------------------------------------
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-------------------------------------
Confidence 45788999 6899999988887 99999997 6654332100
Q ss_pred cceeeeecccCCCceeEEEeCCCCCE--EEEe--------------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 256 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~--l~s~--------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 256 (487)
..+ +...+++|+|+|+. ++++ .++.+.+|++...+.....+.... ..+...+
T Consensus 80 --------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~ 147 (365)
T 1jof_A 80 --------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGI 147 (365)
T ss_dssp --------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCE
T ss_pred --------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcc
Confidence 111 12556889999994 4343 478999999974444333221100 1244678
Q ss_pred EEEEEecCCCCEEEEEeC-CCeEEEEEcc-CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--
Q 011368 257 TSAEFHPIYCNLLAYSSS-RGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 332 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-- 332 (487)
.+++|+|+| ++++++.. ++.|++||+. +++... ...+.. ..|...+..++|+|||++|+++.
T Consensus 148 ~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~~spdg~~l~v~~~~ 213 (365)
T 1jof_A 148 HGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp EEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEEECTTSSEEEEEETT
T ss_pred eEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeEECCCCCEEEEEECC
Confidence 999999999 87777664 6899999998 564320 111111 01134688999999999988764
Q ss_pred CCeEEEEeCCCC-Ccee---eeeecccccccccccccC-CC---CcceeeEEE-EcCCCCEEEEEcCCC------cEEEE
Q 011368 333 YMNLKLWDIRMD-STPV---ATFKIHEHLRPKLCDLYN-ND---SIFDKFECS-VSGDGLHFATGSYSN------LLRIF 397 (487)
Q Consensus 333 d~~i~iwd~~~~-~~~~---~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~s~d~~~l~sg~~dg------~i~iw 397 (487)
++.|.+|++... ++.. ..+....... .. .. ....+..++ |+|||++|++++.+. .|.+|
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~ 287 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGI------PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF 287 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTC------CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCc------CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence 389999987531 3332 1121110000 00 00 000125899 999999988776432 89999
Q ss_pred EeC-CCCceeE--EEeccCCccccceEee
Q 011368 398 SHG-VGSAGGI--TVEAGKNENRKPILQA 423 (487)
Q Consensus 398 d~~-~~~~~~~--~~~~~~~~v~~~~~~~ 423 (487)
++. +++.... ....+......++++|
T Consensus 288 ~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 288 KLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp EECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred EECCCCCEEEeeeeeecCCCCcccceecC
Confidence 996 4432111 1333444455566665
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=9.2e-17 Score=164.59 Aligned_cols=283 Identities=9% Similarity=0.039 Sum_probs=168.1
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.....++| ++++++++++ |++|++||+.+++...+.....
T Consensus 17 ~~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~------------------------------------ 56 (740)
T 4a5s_A 17 LKLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST------------------------------------ 56 (740)
T ss_dssp CCCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT------------------------------------
T ss_pred ccccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechh------------------------------------
Confidence 44678999 5788888876 9999999999987654421100
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
..........++|||||+.|+.+ .+ +.+.+||+.++ +.. .+..+...+..++|+|
T Consensus 57 ------~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~-~~~--------~l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 57 ------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLI--------TEERIPNNTQWVTWSP 121 (740)
T ss_dssp ------TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EEC--------CSSCCCTTEEEEEECS
T ss_pred ------hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC-cEE--------EcccCCCcceeeEECC
Confidence 01111223458899999999998 55 66779999944 322 3556777899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccc---------cceeEEEEcCCCCEEEEEe-C
Q 011368 264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASISDIKFANDGQHLLSRD-Y 333 (487)
Q Consensus 264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~---------~~v~~v~~s~~~~~l~s~~-d 333 (487)
+| +.||.+. ++.|.+||+.++.... .+..++ ....+.++. .....+.|||||++|+..+ |
T Consensus 122 dG-~~la~~~-~~~i~~~~~~~~~~~~---lt~~g~-----~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d 191 (740)
T 4a5s_A 122 VG-HKLAYVW-NNDIYVKIEPNLPSYR---ITWTGK-----EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (740)
T ss_dssp ST-TCEEEEE-TTEEEEESSTTSCCEE---CCSCCB-----TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred CC-CEEEEEE-CCeEEEEECCCCceEE---EcCCCC-----ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEc
Confidence 99 8888884 6899999998876320 111111 000111222 2234589999999999763 2
Q ss_pred -Ce-----------------------------------EEEEeCCC---CCc-eeeeeecccccccccccccCCCCccee
Q 011368 334 -MN-----------------------------------LKLWDIRM---DST-PVATFKIHEHLRPKLCDLYNNDSIFDK 373 (487)
Q Consensus 334 -~~-----------------------------------i~iwd~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (487)
.. |++||+.+ ... ....+..... +. +....+
T Consensus 192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-------~~--~~~~~~ 262 (740)
T 4a5s_A 192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-------ML--IGDHYL 262 (740)
T ss_dssp CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-------HH--TSCEEE
T ss_pred ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-------CC--CCCeEE
Confidence 43 44455442 110 1111111000 00 011123
Q ss_pred eEEEEcCCCCEEEEEcC----CCcEEEEEeCCCC-------ceeEEEeccCCccc-----cceEeeCCcccccccccee-
Q 011368 374 FECSVSGDGLHFATGSY----SNLLRIFSHGVGS-------AGGITVEAGKNENR-----KPILQAAPRARRSSLSNLT- 436 (487)
Q Consensus 374 ~~~~~s~d~~~l~sg~~----dg~i~iwd~~~~~-------~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~l~- 436 (487)
..++|||||+.++.... +..|++||+.+++ .....-..|...+. .+.|+| +++. ++
T Consensus 263 ~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp--DG~~-----l~~ 335 (740)
T 4a5s_A 263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL--DGNS-----FYK 335 (740)
T ss_dssp EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT--TSSE-----EEE
T ss_pred EEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC--CCCE-----EEE
Confidence 68999999997665532 3479999999886 12222256776665 678887 5654 44
Q ss_pred ee-cccce-ecC--CC-CCccccccccCCCeEEEEEcCCCCEEEEec
Q 011368 437 RG-LYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIACAN 478 (487)
Q Consensus 437 ~g-~~~~~-~~w--~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s 478 (487)
.. ..++. ++| +. +.....+....-.|..+. .+|++.|+..+
T Consensus 336 ~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~ 381 (740)
T 4a5s_A 336 IISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYIS 381 (740)
T ss_dssp EEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEE
T ss_pred EEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEE
Confidence 33 35554 665 22 233333444445566553 25576665444
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=3.4e-16 Score=141.18 Aligned_cols=261 Identities=12% Similarity=0.152 Sum_probs=178.3
Q ss_pred hhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcc
Q 011368 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (487)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (487)
..+.+...|+.. +....+...+.+++++++|+++++...++.|.+||.+...
T Consensus 11 ~~~~~~~~~g~~--g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~-------------------------- 62 (286)
T 1q7f_A 11 QRMIYHCKFGEF--GVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF-------------------------- 62 (286)
T ss_dssp EEECEEEEECCB--SSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--------------------------
T ss_pred ceeEEEEeccCC--CCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--------------------------
Confidence 345555566644 3344567789999999999988888889999999965321
Q ss_pred eeEeeec------CCCcccccccccccccceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeee
Q 011368 92 RYKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (487)
Q Consensus 92 ~~~~~~~------~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 164 (487)
...+. +|. ..+..+++. .+++.++++... ++.|.+||. +++.....
T Consensus 63 --~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~----------- 115 (286)
T 1q7f_A 63 --KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKF----------- 115 (286)
T ss_dssp --EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEE-----------
T ss_pred --EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEe-----------
Confidence 12221 222 467888884 256666666543 889999994 44433221
Q ss_pred eccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEee
Q 011368 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD 243 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 243 (487)
...+...+.+++++|+|+++++. .++.|.+||.. + .....+.
T Consensus 116 -----------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~ 158 (286)
T 1q7f_A 116 -----------------------------------GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G-NVLHKFG 158 (286)
T ss_dssp -----------------------------------CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEEEE
T ss_pred -----------------------------------cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C-CEEEEeC
Confidence 12344567899999999988887 88999999975 3 3333321
Q ss_pred cCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368 244 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 323 (487)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~ 323 (487)
...+...+.+++++|+| .++++...++.|++||.... .. ..+.. .++...+..+++++
T Consensus 159 -----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~-----------~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 159 -----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YL----RQIGG-----------EGITNYPIGVGINS 216 (286)
T ss_dssp -----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EE----EEESC-----------TTTSCSEEEEEECT
T ss_pred -----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EE----EEEcc-----------CCccCCCcEEEECC
Confidence 11344568999999999 87777778999999997543 22 33322 01124678999999
Q ss_pred CCCEEEEEe-CC-eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368 324 DGQHLLSRD-YM-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 324 ~~~~l~s~~-d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
+|+++++.. ++ .|.+||.. ++.+..+..+.... .+.+++++|+|+++++ +.|+.|++|++..
T Consensus 217 ~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------QCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------CEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------cceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 998888775 45 99999963 56666665543211 1148999999987776 5789999999865
Q ss_pred C
Q 011368 402 G 402 (487)
Q Consensus 402 ~ 402 (487)
.
T Consensus 281 ~ 281 (286)
T 1q7f_A 281 L 281 (286)
T ss_dssp C
T ss_pred c
Confidence 3
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=4.6e-17 Score=154.19 Aligned_cols=257 Identities=11% Similarity=0.042 Sum_probs=155.7
Q ss_pred CcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
..+.+++|||||++|+..... ..|.+|++.+++. ..+..+..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~----------------------------~~l~~~~~------- 80 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA----------------------------VQLTEGKG------- 80 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE----------------------------EECCCSSC-------
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE----------------------------EEeecCCC-------
Confidence 347788999999998877543 3677778776642 12222220
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.....+.| +|+|++|+.++.++.|++||+.+++...+...... ..+++..++........ ..
T Consensus 81 ----~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~----~~ 142 (396)
T 3c5m_A 81 ----DNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLV----GI 142 (396)
T ss_dssp ----BCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEE----EE
T ss_pred ----CccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCccc----cc
Confidence 22233678 68999999999999999999998876554321111 01111111111100000 00
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
....+.|+|+++.++.+ .+..|++||+.++ ....+ ..+...+..+.|+|
T Consensus 143 ----------------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~~--------~~~~~~~~~~~~sp 197 (396)
T 3c5m_A 143 ----------------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG-ELEVI--------HQDTAWLGHPIYRP 197 (396)
T ss_dssp ----------------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC-CEEEE--------EEESSCEEEEEEET
T ss_pred ----------------cccccccCCCCcceeeeeeccCCCcceEEEEECCCC-cEEee--------ccCCcccccceECC
Confidence 00124578898887653 4568999999843 33332 23456788999999
Q ss_pred -CCCCEEEEEeCC------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C--
Q 011368 264 -IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-- 333 (487)
Q Consensus 264 -~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-- 333 (487)
++ ..|+..+.+ ..|.+||+..++. +.+..+. ....+..+.|+|||++|+..+ +
T Consensus 198 ~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~-----------~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 198 FDD-STVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHA-----------EGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp TEE-EEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCC-----------TTEEEEEEEECTTSSCEEEEEEETT
T ss_pred CCC-CEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccC-----------CCccccceEECCCCCEEEEEecCCC
Confidence 77 767766543 3588888766532 1111100 013578899999999877642 2
Q ss_pred ---CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEc----------------CCCc
Q 011368 334 ---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGS----------------YSNL 393 (487)
Q Consensus 334 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~----------------~dg~ 393 (487)
+.|++||+.+ +....... ... ..+.|+| ||+++++++ .++.
T Consensus 261 ~~~~~l~~~d~~~-g~~~~l~~-~~~-----------------~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 261 QTDRVIYKANPET-LENEEVMV-MPP-----------------CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp TCCEEEEEECTTT-CCEEEEEE-CCS-----------------EEEEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred CccceEEEEECCC-CCeEEeee-CCC-----------------CCCCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 3499999976 44332221 111 1388999 999888754 3478
Q ss_pred EEEEEeCCCC
Q 011368 394 LRIFSHGVGS 403 (487)
Q Consensus 394 i~iwd~~~~~ 403 (487)
|++||+.+++
T Consensus 322 i~~~d~~~~~ 331 (396)
T 3c5m_A 322 LYVLNTKAKS 331 (396)
T ss_dssp EEEEETTTTB
T ss_pred EEEEecccCc
Confidence 9999998764
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=8.5e-16 Score=141.86 Aligned_cols=244 Identities=12% Similarity=0.084 Sum_probs=162.6
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
..|.+++|++++..++..+.++.++.|... ....+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~----------- 44 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKG----------- 44 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSC-----------
T ss_pred cccceeeecCCccceeEEeecccCcccccc------------------------------eeEEEeccC-----------
Confidence 357889999998888777778889999321 123445554
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..+.+++| ++++.+++++..++.|.+||..+++.....
T Consensus 45 -~~~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------- 82 (333)
T 2dg1_A 45 -LQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------------------------- 82 (333)
T ss_dssp -CCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE---------------------------------------
T ss_pred -ccccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe---------------------------------------
Confidence 56789999 578887778888999999999887654331
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cC----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
..+...+.+++++|++++++++ .+ +.|.+||.+... ...++. .......+.+++++|+| .
T Consensus 83 --------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~-----~~~~~~~~~~i~~d~~g-~ 147 (333)
T 2dg1_A 83 --------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIE-----DLSTAYCIDDMVFDSKG-G 147 (333)
T ss_dssp --------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEEC-----SSSSCCCEEEEEECTTS-C
T ss_pred --------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEc-----cCccCCcccceEECCCC-C
Confidence 2345679999999999988887 66 689999988433 222221 01234578999999998 7
Q ss_pred EEEEEeC------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEE
Q 011368 268 LLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLW 339 (487)
Q Consensus 268 ~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iw 339 (487)
++++... .+.|..+|..+++. ..+.. ....+..++|+|+|+.|+.+. ++.|++|
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~-------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~ 209 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQ-------------NISVANGIALSTDEKVLWVTETTANRLHRI 209 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEE-------------EESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred EEEEeccccccCCCceEEEEeCCCCEE-----EEeec-------------CCCcccceEECCCCCEEEEEeCCCCeEEEE
Confidence 7776653 34566666554432 11111 023578899999998766543 4899999
Q ss_pred eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
|+...+..+..+...... .+... ..+..++++++|+++++...++.|.+||..
T Consensus 210 d~~~~g~~~~~~~~~~~~-----~~~~~---~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPY-----YFTGH---EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EECTTSSSEEEEEEEEEE-----ECCSS---SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EecCCCcCcccccceEEE-----ecCCC---CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 996433333222100000 00000 012479999999988887778899999974
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=2.4e-15 Score=138.38 Aligned_cols=259 Identities=11% Similarity=0.079 Sum_probs=171.5
Q ss_pred CcEEEEEEcCCCCEEEEEecC------------------------CcEEEEEeeCCcCCCCcccchhhhhccccccccCC
Q 011368 33 DIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (487)
+.|.+++++|+|+++++...+ +.|.+||..+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------- 81 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------- 81 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence 469999999999999888777 3688888766643
Q ss_pred CcceeEeeec-CCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeec
Q 011368 89 PEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENT 166 (487)
Q Consensus 89 ~~~~~~~~~~-~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~ 166 (487)
...+. ++- .....|++ +++|.++++...++.|++|+..... ...........
T Consensus 82 -----~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------- 135 (329)
T 3fvz_A 82 -----LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------- 135 (329)
T ss_dssp -----EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-------
T ss_pred -----EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-------
Confidence 22222 222 56889999 5788988888889999999986542 11111000000
Q ss_pred cccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe--cCCeEEEEEccCCCceeEEee
Q 011368 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINLWNLEISDQCFNIVD 243 (487)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~ 243 (487)
-.-.++......++++| +++++++. .++.|++|+.. +.....+.
T Consensus 136 -------------------------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~--g~~~~~~~ 182 (329)
T 3fvz_A 136 -------------------------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS--GKFVTQWG 182 (329)
T ss_dssp -------------------------------CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT--SCEEEEEC
T ss_pred -------------------------------CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC--CCEEEEec
Confidence 00023455688999999 78888876 48999999954 34443331
Q ss_pred cCCCC---CCCCCCcEEEEEEecC-CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEE
Q 011368 244 MKPSN---MDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 319 (487)
Q Consensus 244 ~~~~~---~~~~~~~v~~v~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v 319 (487)
..... ..++-.....++++|+ + .++++...++.|++||..+++.. ..+.. ..+...+..+
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~~----~~~~~-----------~~~~~~~~~~ 246 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEFV----REIKH-----------ASFGRNVFAI 246 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCEE----EEECC-----------TTTTTCEEEE
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcEE----EEEec-----------cccCCCccee
Confidence 11000 0122345799999998 6 77777788999999999877644 44432 1223567889
Q ss_pred EEcCCCCEEEEE-------e-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368 320 KFANDGQHLLSR-------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 391 (487)
Q Consensus 320 ~~s~~~~~l~s~-------~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d 391 (487)
+++| +..+++. . ...|++||..+ ++.+..+...... ......++++|+|.++++...+
T Consensus 247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~------------~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH------------FDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp EEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC------------CSSEEEEEECTTSEEEEEESSS
T ss_pred eecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc------------cCCeeEEEECCCCCEEEEECCC
Confidence 9999 4333322 1 25899999986 7777776421110 0112589999999888888899
Q ss_pred CcEEEEEeCCC
Q 011368 392 NLLRIFSHGVG 402 (487)
Q Consensus 392 g~i~iwd~~~~ 402 (487)
+.|++|++...
T Consensus 313 ~~I~~~~~~~~ 323 (329)
T 3fvz_A 313 NTVWKFTLTEK 323 (329)
T ss_dssp CCEEEEEEEEC
T ss_pred CEEEEEeCCcc
Confidence 99999998743
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=1.5e-14 Score=134.64 Aligned_cols=305 Identities=10% Similarity=0.006 Sum_probs=186.5
Q ss_pred CCCEEEEEe------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368 43 TGDYLAVGD------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (487)
Q Consensus 43 ~~~~l~~g~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I 116 (487)
+++++++.. .|+.|.+||..+++. ...+..+. .+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~---------------------------~~~i~~g~------------~p- 53 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF---------------------------LGMVPTAF------------NG- 53 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCE---------------------------EEEEECCE------------EE-
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeE---------------------------EEEecCCC------------CC-
Confidence 555555543 477999999877653 34444443 43
Q ss_pred eEEEEEecCCCcEEEEEe----------CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 117 ~~v~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
.++| +|++++++++. .++.|.+||..+.+...........
T Consensus 54 -~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--------------------------- 103 (361)
T 2oiz_A 54 -HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--------------------------- 103 (361)
T ss_dssp -EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------------------------
T ss_pred -ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------------------------
Confidence 7888 68999998876 3678999999877655432110000
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEE-eecCCCCCCCCCCcEEEEEEe
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~ 262 (487)
..+......++++|||++|+++ . ++.|.+||+.+. +.+.. +. . .....+.+.
T Consensus 104 --------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~--------~-~~~~~v~~~ 159 (361)
T 2oiz_A 104 --------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTA--------A-AGCWSVIPQ 159 (361)
T ss_dssp --------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGG--------G-TTEEEEEEC
T ss_pred --------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEec--------C-CCcceeEEc
Confidence 1123457789999999999987 4 589999999954 44332 21 1 112335677
Q ss_pred cCCCCEEEEEeCCCeEEEEEccC-Cccccccc--eeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEE
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSA--RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 338 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~i 338 (487)
|++...+++.+.||.+.+|++.. ++...... ..+.. ...+ ..+.+++++..++..+ ++.|.+
T Consensus 160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~g~~~~~~~~~~~v~v 225 (361)
T 2oiz_A 160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV-------------KDDP-IFIAPALDKDKAHFVSYYGNVYS 225 (361)
T ss_dssp TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT-------------TTSC-BCSCCEECSSEEEEEBTTSEEEE
T ss_pred CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC-------------CCCc-eEEEecccCCEEEEEeCCCeEEE
Confidence 87657888889999999999865 33210000 01111 1111 1233466776666554 489999
Q ss_pred EeCCCCCce-eeeeecccc-cccccccccCCCCcceeeEEEEcCCCCEEEEEcC-----------CCcEEEEEeCCCCce
Q 011368 339 WDIRMDSTP-VATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-----------SNLLRIFSHGVGSAG 405 (487)
Q Consensus 339 wd~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-----------dg~i~iwd~~~~~~~ 405 (487)
+|+...... +..+..... ...... .... ...++|+||++.++++.. .+.|.+||+.++ +.
T Consensus 226 ~d~~~~~~~~~~~~~~~~~~~~~~~~---~p~g---~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~ 298 (361)
T 2oiz_A 226 ADFSGDEVKVDGPWSLLNDEDKAKNW---VPGG---YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QR 298 (361)
T ss_dssp EECSSSSCEEEEEEESCCHHHHHTTC---EECC---SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EE
T ss_pred EEecCCCceecccccccCcccccccc---ccCC---eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cE
Confidence 998642211 122211100 000000 0000 013789999888877643 348999999988 45
Q ss_pred eEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC----CccccccccCCCeEEEEEcCCCC
Q 011368 406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS----GHHELSYNLSSKLLHLAWHPTTN 472 (487)
Q Consensus 406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~----~~~~~~~~~~~~v~~~~~spd~~ 472 (487)
...+..+. ...++++| ++++ |.+++. +. .+|+.. +.+.........-..++++|||.
T Consensus 299 v~~i~~~~--p~~ia~sp--dg~~-----l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 299 VARIPGRD--ALSMTIDQ--QRNL-----MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECTT--CCEEEEET--TTTE-----EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEecCC--eeEEEECC--CCCE-----EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 77777776 88999998 5666 666665 55 999443 23333345666778999999986
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=5e-16 Score=146.68 Aligned_cols=251 Identities=13% Similarity=0.068 Sum_probs=153.3
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
.+..++|+|||++|+.++.++.|++||+.+++.. ..+..+.
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~---------------------------~~~~~~~------------ 122 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN---------------------------VVYQVPA------------ 122 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECCT------------
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCCcce---------------------------eeeechh------------
Confidence 3446789999999999999999999999887531 2233333
Q ss_pred cceeEEEEEecCCCcEEEEE----------------------eCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368 114 EKINRVRWCAAPNGSMFILS----------------------TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (487)
..+....|..++++.+++.. ..+..|.+||+.+++...+
T Consensus 123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l------------------- 183 (388)
T 3pe7_A 123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI------------------- 183 (388)
T ss_dssp TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-------------------
T ss_pred hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-------------------
Confidence 44545555446888887742 2346788888887765443
Q ss_pred ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-c------CCeEEEEEccCCCceeEEee
Q 011368 172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-D------DLRINLWNLEISDQCFNIVD 243 (487)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~ 243 (487)
..+...+..++|+| ||+.|+.+ . ...|.++|... +....
T Consensus 184 -----------------------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~~~~--- 230 (388)
T 3pe7_A 184 -----------------------------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-TNMRK--- 230 (388)
T ss_dssp -----------------------------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-CCCEE---
T ss_pred -----------------------------ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-CceEE---
Confidence 34556788999999 99998876 4 23777888763 32221
Q ss_pred cCCCCCCCCC--CcEEEEEEecCCCCEEEEEeC-CC----eEEEEEccCCccccccceeecccccccCccccccccc-cc
Q 011368 244 MKPSNMDDLT--EVITSAEFHPIYCNLLAYSSS-RG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-AS 315 (487)
Q Consensus 244 ~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~~ 315 (487)
+..+. ..+..+.|+|+| +.|+..+. ++ .|.+||+.+++.. .+..+..+ .|. ..
T Consensus 231 -----l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~-----------~~~~~~ 291 (388)
T 3pe7_A 231 -----VKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENR--QLTSMPAC-----------SHLMSN 291 (388)
T ss_dssp -----SCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEE--EEEEECCE-----------EEEEEC
T ss_pred -----eeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceE--EEEcCCCc-----------eeeeec
Confidence 22233 357789999999 76655443 22 3999999987632 01111110 000 00
Q ss_pred eeEEEEcCCCCEEEEE---------e-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEE
Q 011368 316 ISDIKFANDGQHLLSR---------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 385 (487)
Q Consensus 316 v~~v~~s~~~~~l~s~---------~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 385 (487)
...+.|+|||+.|+.. . +..|++||+.+ +. +..+..+...... +.. +....+..++|+|||+.|
T Consensus 292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~---~~~-~~~~~~~~~~~spDg~~l 365 (388)
T 3pe7_A 292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-GT-QHRVARHDTSWKV---FEG-DRQVTHPHPSFTPDDKQI 365 (388)
T ss_dssp TTSSEEEEEECCC------------CCCCEEEEEETTT-TE-EEEEEECCCCCCC---BTT-BSSTTCCCCEECTTSSEE
T ss_pred CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-Cc-eEEeccccCcccc---ccc-ccccCCCCccCCCCCCEE
Confidence 1223799999988742 2 36899999975 44 3444444330000 000 000001478999999988
Q ss_pred EEEc-CCCcEEEEEeC
Q 011368 386 ATGS-YSNLLRIFSHG 400 (487)
Q Consensus 386 ~sg~-~dg~i~iwd~~ 400 (487)
+..+ .+|...||.+.
T Consensus 366 ~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 366 LFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEECTTSSCEEEEEE
T ss_pred EEEecCCCceeEEEEE
Confidence 8665 46766676654
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=2.8e-15 Score=152.01 Aligned_cols=225 Identities=13% Similarity=0.006 Sum_probs=137.8
Q ss_pred EEEe--CCCCCE-EEEe--cCCeEEEEEcc--CCCceeEEeecCCCCCCC-----CCCcEEEEEEecCCCCEEEEEeCC-
Q 011368 209 SISN--NSDCET-FVSA--DDLRINLWNLE--ISDQCFNIVDMKPSNMDD-----LTEVITSAEFHPIYCNLLAYSSSR- 275 (487)
Q Consensus 209 ~i~~--s~~~~~-l~s~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~-----~~~~v~~v~~~p~~~~~l~~~~~d- 275 (487)
...| ||||+. |+.+ .+..|+++++. ..+.... +.. |...+.+++|+|+| +.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--------l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~ 151 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--------LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEF 151 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--------CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--------ccCCccCCCCccccCcEECCCC-CEEEEEEecc
Confidence 4445 499998 7776 45666666664 1022222 222 56678899999999 999888876
Q ss_pred ---------CeEEEEEccC------Cccccccceeec-ccccccCccccccccccceeEEEEcCCCCEEEEEe-C-----
Q 011368 276 ---------GFVRLVDMRQ------SALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----- 333 (487)
Q Consensus 276 ---------g~i~iwd~~~------~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d----- 333 (487)
..|.+||+.+ ++. +.+. . +...+..++|||||++|+.++ +
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~l~~~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-----RELSDD-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-----EESSCS-------------CSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-----eEEEec-------------CCCcccCceECCCCCEEEEEECCCCCCC
Confidence 5899999987 432 2222 2 135678899999999998654 3
Q ss_pred ---CeEEEEeCCCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC--cEEEEEeCCCCce
Q 011368 334 ---MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAG 405 (487)
Q Consensus 334 ---~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg--~i~iwd~~~~~~~ 405 (487)
..|++||+...+ ........+...+ ..+.|+|||+++++++.++ .|++||+.+++.
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~---------------~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~- 277 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGGPEEAI---------------AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA- 277 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEETTBCE---------------EEEEECTTSCEEEEECTTSSCEEEEECTTTCCE-
T ss_pred CCCcEEEEEEECCCCcccccEEeCCCCCceE---------------cceEECCCCeEEEEECCCCCeEEEEEECCCCce-
Confidence 379999997324 3333333333322 5899999999888888888 555555545532
Q ss_pred eEEEeccCCc---------cccceEeeCCccccccccceeeecccce-ecC--CC-CCccccccccCCCeEEEEEcCCCC
Q 011368 406 GITVEAGKNE---------NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTN 472 (487)
Q Consensus 406 ~~~~~~~~~~---------v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~-~~~~~~~~~~~~~v~~~~~spd~~ 472 (487)
..+..+... +..+++++ ++++ ++++.. +. ++| +. +.....+..+...+..+ |+++++
T Consensus 278 -~~l~~~~~~~~~p~w~~~~~~~~~~~--~~~~-----~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~ 347 (662)
T 3azo_A 278 -TQLCRREEEFAGPLWTPGMRWFAPLA--NGLI-----AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGT 347 (662)
T ss_dssp -EESSCCSSBSSCCCCSTTCCSEEECT--TSCE-----EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETT
T ss_pred -eecccccccccCccccccCceEeEeC--CCEE-----EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCC
Confidence 222222222 23445544 5666 777777 77 899 32 23344445566667666 255555
Q ss_pred EEE--EecCC---eEEEEe
Q 011368 473 LIA--CANGN---SLFFHY 486 (487)
Q Consensus 473 ~la--~~s~~---~~~i~~ 486 (487)
.++ +++.+ .++++.
T Consensus 348 ~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 348 RAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEcCCCCCCEEEEEE
Confidence 443 44444 255443
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=1.5e-13 Score=123.71 Aligned_cols=243 Identities=9% Similarity=0.100 Sum_probs=162.3
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+.++++ ++++.++++...++.|.+||.... .........
T Consensus 30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~------------------------------------ 70 (286)
T 1q7f_A 30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECG------------------------------------ 70 (286)
T ss_dssp SCEEEEEE--CTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBS------------------------------------
T ss_pred CCCceEEE--CCCCCEEEEECCCCEEEEECCCCc-EEEEecccC------------------------------------
Confidence 56889999 578888888888999999998743 322210000
Q ss_pred ceeeeecccCCCceeEEEe-CCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 194 MATKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~-s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
...++...+..+++ .++++++++. . ++.|.+||.. +.....+. ..+...+.+++++|+| ++++
T Consensus 71 -----~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~~------~~~~~~~~~i~~~~~g-~l~v 136 (286)
T 1q7f_A 71 -----KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKFG------ATILQHPRGVTVDNKG-RIIV 136 (286)
T ss_dssp -----SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEEC------TTTCSCEEEEEECTTS-CEEE
T ss_pred -----CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEec------CccCCCceEEEEeCCC-CEEE
Confidence 00244566889999 5788777777 4 8999999944 33443321 1234568999999999 8888
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~ 349 (487)
+...++.|.+||... +.. ..+.. ..+...+..++++|+|+++++.. ++.|++||.. +..+.
T Consensus 137 ~~~~~~~i~~~~~~g-~~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~ 198 (286)
T 1q7f_A 137 VECKVMRVIIFDQNG-NVL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLR 198 (286)
T ss_dssp EETTTTEEEEECTTS-CEE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEE
T ss_pred EECCCCEEEEEcCCC-CEE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEE
Confidence 877889999999653 222 22321 01134688999999998777765 5999999974 55555
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC-cEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 428 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 428 (487)
.+...... ..+..++++++|+++++...++ .|.+|+.. + .....+..+..
T Consensus 199 ~~~~~g~~-------------~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-~~~~~~~~~~~-------------- 249 (286)
T 1q7f_A 199 QIGGEGIT-------------NYPIGVGINSNGEILIADNHNNFNLTIFTQD-G-QLISALESKVK-------------- 249 (286)
T ss_dssp EESCTTTS-------------CSEEEEEECTTCCEEEEECSSSCEEEEECTT-S-CEEEEEEESSC--------------
T ss_pred EEccCCcc-------------CCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-CEEEEEcccCC--------------
Confidence 55433210 0125899999999888888776 99999954 3 22222211100
Q ss_pred cccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 429 RSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 429 ~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
...+.+++++|+|+++++..++.+++|.
T Consensus 250 ------------------------------~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 250 ------------------------------HAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp ------------------------------CSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred ------------------------------CCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 0135688999999887776666788886
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=2.5e-14 Score=129.62 Aligned_cols=241 Identities=8% Similarity=-0.027 Sum_probs=165.4
Q ss_pred ccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 31 h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
+.....+++|+|+|+ +++++..++.|.+|+..++ . ..+..+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~-------- 68 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS-------- 68 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence 455688999999998 7788888999999997655 2 3344444
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
..+.++++ +++|.++++...++.|.+||..+++........
T Consensus 69 ----~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~--------------------------------- 109 (296)
T 3e5z_A 69 ----HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSF--------------------------------- 109 (296)
T ss_dssp ----SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEE---------------------------------
T ss_pred ----CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc---------------------------------
Confidence 66899999 678888777777789999999777654331100
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEE----e-c-------------CCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCFNIVDMKPSNMDD 251 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s----~-~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 251 (487)
.......+++++++|+|+++++ + . .+.|..++.. +..... ..
T Consensus 110 ----------~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~--------~~ 169 (296)
T 3e5z_A 110 ----------EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAP--------IR 169 (296)
T ss_dssp ----------TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEE--------EC
T ss_pred ----------CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEe--------ec
Confidence 0111235678999999998887 3 1 2345555443 332221 23
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc-CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368 252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 330 (487)
+......++|+|++ +.+++.+.++.|.+||+. .+... .....+.. +...+..++++++|+++++
T Consensus 170 ~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~-~~~~~~~~-------------~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 170 DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETE-YQGVHFTV-------------EPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEE-EEEEEECC-------------SSSCCCSEEEBTTSCEEEE
T ss_pred CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCc-CCCeEeeC-------------CCCCCCeEEECCCCCEEEE
Confidence 44567899999999 877777778999999997 44320 00122211 1345678999999997777
Q ss_pred EeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEE-cCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 331 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 331 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
. ++.|.+||.. ++.+..+..+.. + ++++| +|+++.|++++.+ .+.-++.+++
T Consensus 235 ~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 235 A-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp E-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred c-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 7 7899999985 666777765554 2 48899 5899988888876 3444555544
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=5.1e-14 Score=131.05 Aligned_cols=276 Identities=9% Similarity=0.023 Sum_probs=168.4
Q ss_pred EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.++|+|||++|++++ .++.|.+||..+.+. ..++......
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---------------------------~~~i~~~~~~--- 103 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---------------------------EKEISLPPKR--- 103 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---------------------------EEEEEECTTB---
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---------------------------EEEEEcCccc---
Confidence 899999999999886 367899999876643 2222211000
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCcc
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
.........++| +|+|++|+++.. +++|.+||+.+++.... .
T Consensus 104 ---~~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i------------------------------ 148 (361)
T 2oiz_A 104 ---VQGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVT------------------------------ 148 (361)
T ss_dssp ---CCBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEG------------------------------
T ss_pred ---cccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEe------------------------------
Confidence 000034567888 689999988863 68999999998865432 1
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 261 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (487)
. . .....+.+.|++ ..+++. .||.+.+|+....++....... ...+...... ..+.+
T Consensus 149 -----------------~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-~~~~~~~~~~-~~~~~ 207 (361)
T 2oiz_A 149 -----------------A-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-KQMFSVKDDP-IFIAP 207 (361)
T ss_dssp -----------------G-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-CCCSCTTTSC-BCSCC
T ss_pred -----------------c-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-cceEcCCCCc-eEEEe
Confidence 0 1 111224566665 455555 8888888888754444322110 0112222222 23344
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e--------
Q 011368 262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-------- 332 (487)
Q Consensus 262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~-------- 332 (487)
+|++ ..++..+.++.+.++|+....... ...+........... + .......++++|+++.++++ .
T Consensus 208 ~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~~~-~--~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~ 281 (361)
T 2oiz_A 208 ALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDEDKAKN-W--VPGGYNLVGLHRASGRMYVFMHPDGKEGTH 281 (361)
T ss_dssp EECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHHHHHTT-C--EECCSSCEEEETTTTEEEEEEESSCCTTCT
T ss_pred cccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCccccccc-c--ccCCeeEEEEecCCCeEEEEEccCCCcccc
Confidence 6777 777778889999999997654210 011111000000000 0 00112237899998877764 3
Q ss_pred ---CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC-ceeEE
Q 011368 333 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGIT 408 (487)
Q Consensus 333 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~-~~~~~ 408 (487)
.+.|.+||+.+ .+.+..+..+. + .+++|+|||++|++++. +.|.+||..+++ +....
T Consensus 282 ~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 282 KFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp TCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred cCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 24899999997 88888888776 3 49999999999998887 999999999872 22444
Q ss_pred EeccCCccccceEee
Q 011368 409 VEAGKNENRKPILQA 423 (487)
Q Consensus 409 ~~~~~~~v~~~~~~~ 423 (487)
+......-..+++.|
T Consensus 343 i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 343 IEGAAEASLQVQFHP 357 (361)
T ss_dssp ETTSCSSEEEEEECC
T ss_pred eccCCCCcEEEEecC
Confidence 444444445566665
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=2.3e-12 Score=116.54 Aligned_cols=238 Identities=9% Similarity=0.029 Sum_probs=161.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...+.+++++++|+++++...++.|.+||.. ++.. ...+..+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~--------------------------~~~~~~~~---------- 56 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT--------------------------EYPLPTPD---------- 56 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE--------------------------EEECSSTT----------
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE--------------------------EecCCccc----------
Confidence 4579999999999988776667899999976 3210 01111222
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
..+..+++ .+++.++++...++.|..|+.. ++.....
T Consensus 57 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-------------------------------------- 93 (299)
T 2z2n_A 57 --AKVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEYT-------------------------------------- 93 (299)
T ss_dssp --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred --CceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEEe--------------------------------------
Confidence 56888998 5788877777778889999876 3322210
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
+......+.++++.++++++++. .++.|..||.. +. .... ........+.+++++++| .+++
T Consensus 94 --------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~------~~~~~~~~~~~i~~~~~g-~l~v 156 (299)
T 2z2n_A 94 --------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GK-IREY------ELPNKGSYPSFITLGSDN-ALWF 156 (299)
T ss_dssp --------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEE------ECSSTTCCEEEEEECTTS-CEEE
T ss_pred --------CCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CC-EEEe------cCCCCCCCCceEEEcCCC-CEEE
Confidence 12234568899999999988888 78899999983 33 2221 122334568999999998 8877
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~ 349 (487)
+...++.|..||. +++.. .+.. ......+..++++++|++.++.. .+.|.+||. + +...
T Consensus 157 ~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~- 216 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDIT-----EFKI-----------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S-GEIT- 216 (299)
T ss_dssp EETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEE-
T ss_pred EeCCCCEEEEEcC-CCcEE-----EeeC-----------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-C-CcEE-
Confidence 7777889999998 55422 1111 01124578999999998776664 489999998 4 4432
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
.+..... ...+.+++++++|+.+++...++.|.+||.
T Consensus 217 ~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 217 EFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 2221110 001258999999997777667889999997
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=1.5e-13 Score=126.40 Aligned_cols=258 Identities=9% Similarity=0.030 Sum_probs=161.1
Q ss_pred cceeEEEEEecCCCcEEEEEeCCC------------------------cEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDK------------------------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (487)
+.+.+|++ +++|+++++...++ .|.+||..+++....
T Consensus 24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 67999999 68899888887774 566666665554322
Q ss_pred ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC--C
Q 011368 170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--P 246 (487)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~ 246 (487)
+-.++......++++|+|+++++. .++.|++|+.......+..+... +
T Consensus 85 -----------------------------~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 85 -----------------------------SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp -----------------------------ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC
T ss_pred -----------------------------cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC
Confidence 112445578899999999988888 89999999987332133322110 0
Q ss_pred CCCCCCCCcEEEEEEec-CCCCEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368 247 SNMDDLTEVITSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 324 (487)
Q Consensus 247 ~~~~~~~~~v~~v~~~p-~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~ 324 (487)
..-.++...+..++++| ++ .++++.+ .++.|++||. ++... ..+....... ....++-.....++++|+
T Consensus 136 g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~~---~~~~~~~~~p~gia~d~~ 206 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSGS---SPRPGQFSVPHSLALVPH 206 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCSS---SCCTTEESCEEEEEEETT
T ss_pred CCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCCC---CCCCcccCCCcEEEEECC
Confidence 00023445689999999 77 7888776 6899999994 44433 3333210000 000112345789999999
Q ss_pred -CCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC------CCCEEEEEcCCCcEEE
Q 011368 325 -GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRI 396 (487)
Q Consensus 325 -~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------d~~~l~sg~~dg~i~i 396 (487)
+.++++.. ++.|++||..+ ++.+..+....... .+..++++| +|+..++...+..|++
T Consensus 207 ~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 207 LDQLCVADRENGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp TTEEEEEETTTTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred CCEEEEEECCCCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence 55555544 48999999985 77777775432211 114788888 3333333444568999
Q ss_pred EEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEE
Q 011368 397 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIAC 476 (487)
Q Consensus 397 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~ 476 (487)
|++.+++. ...+... ..+......|+++|||.++++
T Consensus 273 ~~~~~g~~-~~~~~~~-------------------------------------------~~~~~~p~~ia~~~dG~lyva 308 (329)
T 3fvz_A 273 MNFSSGEI-IDVFKPV-------------------------------------------RKHFDMPHDIVASEDGTVYIG 308 (329)
T ss_dssp EETTTCCE-EEEECCS-------------------------------------------SSCCSSEEEEEECTTSEEEEE
T ss_pred EEcCCCeE-EEEEcCC-------------------------------------------CCccCCeeEEEECCCCCEEEE
Confidence 99887743 2222100 011225678999999977776
Q ss_pred ec-CCeEEEEe
Q 011368 477 AN-GNSLFFHY 486 (487)
Q Consensus 477 ~s-~~~~~i~~ 486 (487)
.. .+.+.+|.
T Consensus 309 d~~~~~I~~~~ 319 (329)
T 3fvz_A 309 DAHTNTVWKFT 319 (329)
T ss_dssp ESSSCCEEEEE
T ss_pred ECCCCEEEEEe
Confidence 66 44577775
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=6e-14 Score=143.10 Aligned_cols=247 Identities=10% Similarity=0.069 Sum_probs=161.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCC-----cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
...+..++|||||++||.+..++ .|++||+.+++.. ...+. .
T Consensus 124 ~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~--------------------------~~~~~--~----- 170 (710)
T 2xdw_A 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL--------------------------PDVLE--R----- 170 (710)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE--------------------------EEEEE--E-----
T ss_pred CEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC--------------------------ccccc--C-----
Confidence 34688999999999999776543 8999999887541 00111 1
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCCc----------------EEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
..+..++| +|||+.|+.++.++. |++|++.+++....
T Consensus 171 -------~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~------------------ 223 (710)
T 2xdw_A 171 -------VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI------------------ 223 (710)
T ss_dssp -------ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE------------------
T ss_pred -------cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce------------------
Confidence 23567999 689999999887765 89999877652111
Q ss_pred cccccccCCCCcceeeeeeeeccceeeee-cccCCCceeEEEeCCCCCEEEEe-c-----CCeEEEEEccC------CCc
Q 011368 171 KNFMNEHNPPSFAHGYHLEWTENMATKVY-PHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEI------SDQ 237 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~-~-----d~~i~iwd~~~------~~~ 237 (487)
..+ ...+...+..+.|+|||++|+.+ . +..|++||+.+ +..
T Consensus 224 --------------------------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 224 --------------------------LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp --------------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred --------------------------EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 000 12345567899999999999886 4 57899999985 321
Q ss_pred eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC----CeEEEEEccCCccccccceeecccccccCccccccccc
Q 011368 238 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 313 (487)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 313 (487)
.... +..+...+.. .|+|+| ..|+..+.. +.|.+||+.++... ..+.+..| +.
T Consensus 278 ~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~------------~~ 334 (710)
T 2xdw_A 278 KWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLVPE------------HE 334 (710)
T ss_dssp CCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECC------------CS
T ss_pred ceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cceeccCC------------CC
Confidence 2222 2233444444 488998 766666543 36999998876310 01222221 11
Q ss_pred -cceeEEEEcCCCCEEEEEe-CC--eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-
Q 011368 314 -ASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG- 388 (487)
Q Consensus 314 -~~v~~v~~s~~~~~l~s~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg- 388 (487)
..+..+.|++++.++++.. ++ .|++|++.+ ++.+..+..+...+ ..++++|+++.|+..
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------VGYSGQKKDTEIFYQF 398 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------EEEECCTTCSEEEEEE
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------EEEecCCCCCEEEEEE
Confidence 2578889997777777764 45 567778754 66666666553322 478899998766633
Q ss_pred ---cCCCcEEEEEeCCCC
Q 011368 389 ---SYSNLLRIFSHGVGS 403 (487)
Q Consensus 389 ---~~dg~i~iwd~~~~~ 403 (487)
...+.|++||+.+++
T Consensus 399 ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 399 TSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ECSSCCCEEEEEETTSSS
T ss_pred eCCCCCCEEEEEECCCCc
Confidence 235789999998875
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=1.4e-12 Score=127.68 Aligned_cols=317 Identities=9% Similarity=-0.007 Sum_probs=194.3
Q ss_pred CCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEE
Q 011368 42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 121 (487)
Q Consensus 42 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~ 121 (487)
|.+.++++...++.|.++|..+++. +..+... ..+..+.|
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------~~~i~~g-------------~~p~~v~~ 204 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------KTVLDTG-------------YAVHISRL 204 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECS-------------SCEEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE---------------------------EEEEeCC-------------CCccceEE
Confidence 4455667777889999999887754 2333322 34678899
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeee
Q 011368 122 CAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVY 199 (487)
Q Consensus 122 ~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (487)
+|+|+++++++.|+.|.+||+. +.+.....
T Consensus 205 --SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i---------------------------------------------- 236 (567)
T 1qks_A 205 --SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI---------------------------------------------- 236 (567)
T ss_dssp --CTTSCEEEEEETTSEEEEEETTSSSCCEEEEE----------------------------------------------
T ss_pred --CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE----------------------------------------------
Confidence 6899999999999999999995 54433221
Q ss_pred cccCCCceeEEEeC----CCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCC---CCCC-cEEEEEEecCCCCEE
Q 011368 200 PHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTE-VITSAEFHPIYCNLL 269 (487)
Q Consensus 200 ~~~~~~~v~~i~~s----~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~-~v~~v~~~p~~~~~l 269 (487)
.. ......++|+ |||++++++ .+++|.++|..+ .+.+..+........ .|.. .+..+..+++++.++
T Consensus 237 -~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 237 -KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp -EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred -ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 11 2235789999 699998887 789999999885 445554432211111 1222 678899999885666
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCce
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP 347 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~ 347 (487)
+....+|.|.++|....+... +..+.. ......+.|+|+|++++++. ++.|.++|+.+ ++.
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl 376 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKL 376 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEE
T ss_pred EEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcE
Confidence 666678999999987653210 112221 23466889999999988764 49999999987 676
Q ss_pred eeeeec-ccccccccccccCCCCcceeeEEE-EcCCCC-EEEEEc-CCCcEEEEEeCCCC------ceeEEEeccCCccc
Q 011368 348 VATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGL-HFATGS-YSNLLRIFSHGVGS------AGGITVEAGKNENR 417 (487)
Q Consensus 348 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~-~l~sg~-~dg~i~iwd~~~~~------~~~~~~~~~~~~v~ 417 (487)
+..+.. ...+-+. ..+. ++|++. ..+++. .++.|.++|..+++ ....++........
T Consensus 377 ~~~i~vgg~~Phpg-------------~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~ 443 (567)
T 1qks_A 377 VAIEDTGGQTPHPG-------------RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL 443 (567)
T ss_dssp EEEEECSSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred EEEEeccCcCCCCc-------------cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE
Confidence 666654 2211100 1233 578744 445553 46899999998732 23455554322112
Q ss_pred cceEeeCCccccccccceeeec---cc----ce-ecCCCCCc-----c---ccc--------cccCCCeEEEEEcCCCCE
Q 011368 418 KPILQAAPRARRSSLSNLTRGL---YR----QA-HENSSSGH-----H---ELS--------YNLSSKLLHLAWHPTTNL 473 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~g~---~~----~~-~~w~~~~~-----~---~~~--------~~~~~~v~~~~~spd~~~ 473 (487)
.+...| +++. +-+.. .| .. .+++.... . ... ..-.+.+.++.|+|||+.
T Consensus 444 ~i~~~p--~~~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 516 (567)
T 1qks_A 444 FIKTHP--NSQY-----LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE 516 (567)
T ss_dssp CEECCT--TCSE-----EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred EEEeCC--CCCe-----EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence 233333 3332 22211 11 12 44422211 1 011 012457889999999998
Q ss_pred EEEec------CCeEEEEe
Q 011368 474 IACAN------GNSLFFHY 486 (487)
Q Consensus 474 la~~s------~~~~~i~~ 486 (487)
+.++. ++.+.|+.
T Consensus 517 ~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 517 VWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EEEEEECCTTSCCEEEEEE
T ss_pred EEEEeecCCCCCCcEEEEE
Confidence 76652 35577764
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=6.9e-14 Score=142.67 Aligned_cols=239 Identities=8% Similarity=-0.064 Sum_probs=156.2
Q ss_pred cCCCceeEEEeCCCCCEEEEe-c-CC----eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368 202 AHDFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 275 (487)
+|...+..++|||||++|+.+ . +| .|++||+.++ ...... +.. ..+..++|+|+| +.|+.++.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~------~~~--~~~~~~~wspDg-~~l~~~~~~ 191 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDV------LER--VKFSCMAWTHDG-KGMFYNAYP 191 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEE------EEE--ECSCCEEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCccc------ccC--cccceEEEEeCC-CEEEEEEEC
Confidence 455568899999999999886 4 33 8999999844 333221 111 124678999999 889888877
Q ss_pred Ce----------------EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe------C
Q 011368 276 GF----------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------Y 333 (487)
Q Consensus 276 g~----------------i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~------d 333 (487)
+. |.+|++.++..... ..+.. ..|...+..+.|+|||++|+... +
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred CccccccccccccCCCCEEEEEECCCCcccce--EEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 65 99999987652111 22222 11234578899999999988653 3
Q ss_pred CeEEEEeCCC------CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC----CcEEEEEeCCCC
Q 011368 334 MNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS 403 (487)
Q Consensus 334 ~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d----g~i~iwd~~~~~ 403 (487)
..|++||+.+ .......+..+.... ...|+|+|+.|+..+.. +.|.+||+.++.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 6899999874 222344555444322 34588999888766543 369999998764
Q ss_pred c-eeEEEeccCC--ccccceEeeCCccccccccceeeecccce-ecC--C--CCCccccccccCCCeEEEEEcCCCCEEE
Q 011368 404 A-GGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S--SSGHHELSYNLSSKLLHLAWHPTTNLIA 475 (487)
Q Consensus 404 ~-~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~--~~~~~~~~~~~~~~v~~~~~spd~~~la 475 (487)
. ....+..|.. .+..+.+.+ ++.+ +++...++. ++| . .++.......+...|..++++|+++.|+
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~--~~~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVR--SNFL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEET--TTEE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred cccceeccCCCCCCeEEEEEEEc--CCEE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 2 2345555544 566666663 4555 777777876 666 3 3433344444567788999999998776
Q ss_pred Eec-C----CeEEEEe
Q 011368 476 CAN-G----NSLFFHY 486 (487)
Q Consensus 476 ~~s-~----~~~~i~~ 486 (487)
... + ..+|+|.
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 442 1 3477775
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=2.2e-13 Score=126.32 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=149.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEe---------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC
Q 011368 31 DVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (487)
....+..+++ ||++++... .++.|.+|++.+++. ..+
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------~~l---- 58 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----------------------------RFI---- 58 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----------------------------EEE----
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce----------------------------EEc----
Confidence 3456888888 898887653 256788888876642 111
Q ss_pred cccccccccccccceeEEEEEecCCCcEEEEEeCC---C--cEEEEEccccceeEeeecCCCCceeeeeccccccccccc
Q 011368 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (487)
Q Consensus 102 ~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (487)
..+..++| +|+|++|+.++.+ + .|.+|++.+++...+
T Consensus 59 ------------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l------------------------ 100 (347)
T 2gop_A 59 ------------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI------------------------ 100 (347)
T ss_dssp ------------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE------------------------
T ss_pred ------------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEE------------------------
Confidence 23678899 6899999887643 3 377778877765433
Q ss_pred cCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------------------------CeEE
Q 011368 177 HNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD---------------------------LRIN 228 (487)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------------------------~~i~ 228 (487)
..+.. +..++|+|||+.|+.+ .+ ..|+
T Consensus 101 ------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 101 ------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp ------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred ------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 12223 8899999999988887 43 5788
Q ss_pred EEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-------eEEEEEccCCccccccceeeccccc
Q 011368 229 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAE 301 (487)
Q Consensus 229 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~h~~ 301 (487)
+||+.+ +.....+ .. . .+..+.|+|+| +++++..++ ...||.+.+++. +.+..
T Consensus 156 ~~d~~~-~~~~~~l-------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~l~~--- 215 (347)
T 2gop_A 156 IFDTES-EEVIEEF-------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-----EKMFE--- 215 (347)
T ss_dssp EEETTT-TEEEEEE-------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-----EEEEE---
T ss_pred EEECCC-CeEEeee-------cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-----EEecc---
Confidence 999984 4331222 11 2 56789999997 566665432 345554444331 22222
Q ss_pred ccCccccccccccceeEEEEcCCCCEEEEEe-C--------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcce
Q 011368 302 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 372 (487)
Q Consensus 302 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (487)
+ ..+..+ +|||++|+.++ + ..|++|| + ++.......+...+
T Consensus 216 ----------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~-------------- 265 (347)
T 2gop_A 216 ----------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGV-------------- 265 (347)
T ss_dssp ----------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEE--------------
T ss_pred ----------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCccc--------------
Confidence 1 233443 99999887654 2 3688888 3 44443333333322
Q ss_pred eeE-EEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368 373 KFE-CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 423 (487)
Q Consensus 373 ~~~-~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 423 (487)
.. +.|+ |+ ++++++.++.++|| +.++ .. ..+..+...+..+.+++
T Consensus 266 -~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 266 -GQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp -EEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS
T ss_pred -CCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC
Confidence 34 8899 88 88999999999999 8854 22 23333344455555543
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=2.3e-13 Score=121.31 Aligned_cols=238 Identities=9% Similarity=0.024 Sum_probs=158.5
Q ss_pred cEEEEEEcCCCCEEE-EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
...+++++++|++++ +...++.|.+|+..+.... .....+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~----------- 66 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGL----------- 66 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSC-----------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCc-----------
Confidence 688999999999777 5467889999986544320 0011121
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..+.++++ .+++.++++.. ++.|.+||..+......
T Consensus 67 -~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~---------------------------------------- 102 (270)
T 1rwi_B 67 -YQPQGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVL---------------------------------------- 102 (270)
T ss_dssp -CSCCCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEEC----------------------------------------
T ss_pred -CCcceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeee----------------------------------------
Confidence 45778898 57787666655 88999999876543221
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
.......+.+++++++|+++++. .++.|.+|+..+..... . .......+.+++++|+| +++++
T Consensus 103 -------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~-------~~~~~~~p~~i~~~~~g-~l~v~ 166 (270)
T 1rwi_B 103 -------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-L-------PFTGLNDPDGVAVDNSG-NVYVT 166 (270)
T ss_dssp -------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-C-------CCCSCCSCCCEEECTTC-CEEEE
T ss_pred -------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-e-------ccccCCCceeEEEeCCC-CEEEE
Confidence 01223567899999999988887 88999999765322211 0 11222356789999999 87777
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
...++.|.+||....... ..... +...+..++++++|.++++.. ++.|.+||... ... ..
T Consensus 167 ~~~~~~i~~~~~~~~~~~----~~~~~-------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~-~~ 227 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQV----VLPFT-------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS-TTS-TV 227 (270)
T ss_dssp EGGGTEEEEECTTTCCEE----ECCCS-------------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTC-SCC-EE
T ss_pred ECCCCEEEEEecCCCceE----eeccc-------------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCC-Ccc-ee
Confidence 777889999998765422 11111 124678999999997666664 48999999864 322 22
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
...... ..+.+++++++|+++++...++.|+++++...
T Consensus 228 ~~~~~~--------------~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 228 LPFTGL--------------NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CCCCSC--------------SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred eccCCC--------------CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 211110 01258999999998888899999999998765
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=5.7e-14 Score=142.84 Aligned_cols=248 Identities=11% Similarity=-0.010 Sum_probs=154.9
Q ss_pred ccCcEEEEEEcCCCCEEEE-----EecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 31 DVDIVSAIEFDKTGDYLAV-----GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~-----g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
|...+.+++|||||++||. |+.+..|++||+.+++.. . ..+...
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------------~--~~~~~~-- 167 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------------K--VDVIEG-- 167 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------------S--SCCBSC--
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------------C--CcccCc--
Confidence 4447999999999999984 444568999999888631 0 111100
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCc-------------EEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
.....++| +|||+.|+.++.|.. |++|++.++......
T Consensus 168 --------~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l------------------- 218 (695)
T 2bkl_A 168 --------GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV------------------- 218 (695)
T ss_dssp --------CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE-------------------
T ss_pred --------ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE-------------------
Confidence 11267899 689999999988776 999999876521100
Q ss_pred cccccCCCCcceeeeeeeeccceeeee-cccCCCceeEEEeCCCCCEEEEe-cCC----eEEEEEccCCCceeEEeecCC
Q 011368 173 FMNEHNPPSFAHGYHLEWTENMATKVY-PHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQCFNIVDMKP 246 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~-~d~----~i~iwd~~~~~~~~~~~~~~~ 246 (487)
.+ ...+...+..+.|+|||++|+.+ .++ .|++|+.. .+....+
T Consensus 219 -------------------------v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~-~~~~~~l----- 267 (695)
T 2bkl_A 219 -------------------------VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG-EKDFRLL----- 267 (695)
T ss_dssp -------------------------EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-CSSCEEE-----
T ss_pred -------------------------EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-CCceEEe-----
Confidence 00 13455678899999999999886 554 66666554 2232222
Q ss_pred CCCCCCCCcEEEEEEecCCCCEEEEEeC----CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 247 SNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 247 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
..+...+....+ ++| . ++..+. ++.|.+||+.++... ..+.+..| .....+..++|+
T Consensus 268 ---~~~~~~~~~~~~-~~g-~-l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~-----------~~~~~l~~~~~~ 328 (695)
T 2bkl_A 268 ---VKGVGAKYEVHA-WKD-R-FYVLTDEGAPRQRVFEVDPAKPARA--SWKEIVPE-----------DSSASLLSVSIV 328 (695)
T ss_dssp ---EECSSCCEEEEE-ETT-E-EEEEECTTCTTCEEEEEBTTBCSGG--GCEEEECC-----------CSSCEEEEEEEE
T ss_pred ---ecCCCceEEEEe-cCC-c-EEEEECCCCCCCEEEEEeCCCCCcc--CCeEEecC-----------CCCCeEEEEEEE
Confidence 233344555556 777 5 444443 578999998775420 00122211 002457788888
Q ss_pred CCCCEEEEEe-CCeEEEEeCCCCCceeeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEE----EEcCCCcEEE
Q 011368 323 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA----TGSYSNLLRI 396 (487)
Q Consensus 323 ~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~----sg~~dg~i~i 396 (487)
++.++++.. ++..++|.+...+.....+..+ ... +..++++|+++.|+ +....++|++
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~---------------v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGA---------------ASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSE---------------ECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeE---------------EEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 566666654 5777777654334545555443 221 13678889998777 3334578999
Q ss_pred EEeCCCCc
Q 011368 397 FSHGVGSA 404 (487)
Q Consensus 397 wd~~~~~~ 404 (487)
||+.+++.
T Consensus 393 ~d~~~g~~ 400 (695)
T 2bkl_A 393 TSVSTGKS 400 (695)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99988753
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=3.7e-13 Score=121.87 Aligned_cols=195 Identities=11% Similarity=0.056 Sum_probs=129.2
Q ss_pred cceeEEEEEecCCCc-EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
....+++|. ++++ +++++..++.|..|+..++ ....
T Consensus 28 ~~~eg~~~d--~~g~~l~~~~~~~~~i~~~~~~~~-~~~~---------------------------------------- 64 (296)
T 3e5z_A 28 TWTEGPVYV--PARSAVIFSDVRQNRTWAWSDDGQ-LSPE---------------------------------------- 64 (296)
T ss_dssp SSEEEEEEE--GGGTEEEEEEGGGTEEEEEETTSC-EEEE----------------------------------------
T ss_pred ccccCCeEe--CCCCEEEEEeCCCCEEEEEECCCC-eEEE----------------------------------------
Confidence 557899994 6777 7778888999999999877 3322
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
..+...+.+++++|+|+++++. .++.|.+||..++. ...+.... .......+..++++|+| .++++
T Consensus 65 --------~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~vt 131 (296)
T 3e5z_A 65 --------MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE-WESIADSF---EGKKLNSPNDVCLAPDG-SLWFS 131 (296)
T ss_dssp --------ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC-EEEEECEE---TTEECCCCCCEEECTTS-CEEEE
T ss_pred --------ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc-EEEEeecc---CCCCCCCCCCEEECCCC-CEEEE
Confidence 3455678999999999988887 77999999996443 32221100 01112346779999999 88877
Q ss_pred EeC-----------------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368 272 SSS-----------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 333 (487)
Q Consensus 272 ~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d 333 (487)
.+. .+.|..++.. ++. ..+.. +......++|+|+|+.+++.. +
T Consensus 132 d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~~~~-------------~~~~~~gi~~s~dg~~lv~~~~~ 192 (296)
T 3e5z_A 132 DPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-----SAPIR-------------DRVKPNGLAFLPSGNLLVSDTGD 192 (296)
T ss_dssp ECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----EEEEC-------------CCSSEEEEEECTTSCEEEEETTT
T ss_pred CCccccccccccccccccCCCcEEEEECCC-CCE-----EEeec-------------CCCCCccEEECCCCCEEEEeCCC
Confidence 321 2455555544 321 22222 134568899999999985554 3
Q ss_pred CeEEEEeCCCCCce---eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 334 MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 334 ~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+.|++|++...+.. ...+..+... +..++++++|+++++. ++.|.+|+..
T Consensus 193 ~~i~~~~~~~~g~~~~~~~~~~~~~~~---------------p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 193 NATHRYCLNARGETEYQGVHFTVEPGK---------------TDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp TEEEEEEECSSSCEEEEEEEECCSSSC---------------CCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CeEEEEEECCCCcCcCCCeEeeCCCCC---------------CCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 89999998632433 2223111111 1379999999877666 7889999976
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=1.5e-12 Score=119.93 Aligned_cols=245 Identities=11% Similarity=0.105 Sum_probs=155.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
+...+.+++|+|+|++++++..++.|.+||.++++. ......+.
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---------------------------~~~~~~~~--------- 86 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---------------------------KRPFVSHK--------- 86 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------EEEEECSS---------
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------EEEeeCCC---------
Confidence 445678999999999888888889999999876643 11121333
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCC----CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
..+.+++| +++++++++...+ +.|.+||..++.......
T Consensus 87 ---~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------------------------- 129 (333)
T 2dg1_A 87 ---ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-------------------------------- 129 (333)
T ss_dssp ---SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC--------------------------------
T ss_pred ---CCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc--------------------------------
Confidence 66899999 6788877777666 689999988776442210
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 259 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 259 (487)
...+...+.+++++|+|+++++. . .+.|..++... +....+ ......+..+
T Consensus 130 -------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-~~~~~~--------~~~~~~~~~i 187 (333)
T 2dg1_A 130 -------------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPI--------IQNISVANGI 187 (333)
T ss_dssp -------------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEE--------EEEESSEEEE
T ss_pred -------------cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC-CEEEEe--------ecCCCcccce
Confidence 01234568899999999888876 4 24555555542 222221 1122347889
Q ss_pred EEecCCCCEEE-EEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeE
Q 011368 260 EFHPIYCNLLA-YSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 336 (487)
Q Consensus 260 ~~~p~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i 336 (487)
+|+|++ +.|+ +.+.++.|.+||+.. +... ..+.... ...+.++ ..+..++++++|+++++.. ++.|
T Consensus 188 ~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~-----~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 188 ALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATI-----PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp EECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEE-----EEECCSS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred EECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceE-----EEecCCC-CCCCceEECCCCCEEEEEcCCCEE
Confidence 999998 7554 445678999999964 2211 1111000 0000111 3578899999999877765 4899
Q ss_pred EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
.+||.. ++.+..+..+.... .....+.+++|+||++.|+.++.++
T Consensus 257 ~~~d~~--g~~~~~~~~~~~~~---------g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 257 LVFNKR--GYPIGQILIPGRDE---------GHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEECTT--SCEEEEEECTTGGG---------TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEECCC--CCEEEEEEcCCCcc---------ccccCcceEEECCCCCEEEEEeCcc
Confidence 999984 55666665432200 0000114899999987777666553
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=1.1e-13 Score=140.79 Aligned_cols=238 Identities=6% Similarity=-0.060 Sum_probs=147.9
Q ss_pred ccCCCceeEEEeCCCCCEEEEe------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368 201 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 274 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 274 (487)
.+|...+..++|||||++|+.+ .+..|++||+.++..... ..+.... ...++|+|+| +.|+.++.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~~~--~~~~~wspDg-~~l~~~~~ 187 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV------DVIEGGK--YATPKWTPDS-KGFYYEWL 187 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS------CCBSCCT--TCCCEECTTS-SEEEEEEC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC------cccCccc--ccceEEecCC-CEEEEEEe
Confidence 3566678999999999999853 346899999995543100 0111111 1578999999 89999888
Q ss_pred CCe-------------EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CC----eE
Q 011368 275 RGF-------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM----NL 336 (487)
Q Consensus 275 dg~-------------i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~----~i 336 (487)
+.. |++|++.++..... ..+.. .++...+..+.|+|||++|+... ++ .|
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l 254 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER-----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDV 254 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC-----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec-----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence 765 99999988652211 22222 12345788999999999988753 34 67
Q ss_pred EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc---CCCcEEEEEeCCCCce-eEEEecc
Q 011368 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAG-GITVEAG 412 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~---~dg~i~iwd~~~~~~~-~~~~~~~ 412 (487)
++|+... + ....+..+.... ....+ ++|++++... .++.|.+||+.+++.. ...+-.+
T Consensus 255 ~~~~~~~-~-~~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 316 (695)
T 2bkl_A 255 YWKRPGE-K-DFRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE 316 (695)
T ss_dssp EEECTTC-S-SCEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred EEEcCCC-C-ceEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence 7776543 3 334444433321 24555 5666444444 2578999999876431 2333333
Q ss_pred --CCccccceEeeCCccccccccceeeecccce-ecC--C-CCCcccccccc-CCCeEEEEEcCCCCEEEEecC-----C
Q 011368 413 --KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSYNL-SSKLLHLAWHPTTNLIACANG-----N 480 (487)
Q Consensus 413 --~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~-~~~~~~~~~~~-~~~v~~~~~spd~~~la~~s~-----~ 480 (487)
...+..+.+. ++.+ +++...++. ++| . .++.......+ ...|..++++||++.|+.... .
T Consensus 317 ~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 388 (695)
T 2bkl_A 317 DSSASLLSVSIV---GGHL-----SLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR 388 (695)
T ss_dssp CSSCEEEEEEEE---TTEE-----EEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred CCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 3445555655 4455 788888888 888 3 23222222222 556778899999987774331 2
Q ss_pred eEEEEe
Q 011368 481 SLFFHY 486 (487)
Q Consensus 481 ~~~i~~ 486 (487)
.+|+|+
T Consensus 389 ~v~~~d 394 (695)
T 2bkl_A 389 QIYKTS 394 (695)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 477775
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.61 E-value=2.1e-14 Score=135.80 Aligned_cols=163 Identities=13% Similarity=0.035 Sum_probs=97.8
Q ss_pred cCCCceeEEEeCC-CCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCC--CCcEEEEEEecCCCCEEEE
Q 011368 202 AHDFNINSISNNS-DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDL--TEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 202 ~~~~~v~~i~~s~-~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~~ 271 (487)
.+...+..+.|+| +++.|+.. .+ ..|.+||+.. +.... +..+ ...+..++|+|+| +.|+.
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~ 254 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SNVRK--------IKEHAEGESCTHEFWIPDG-SAMAY 254 (396)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CCCEE--------SSCCCTTEEEEEEEECTTS-SCEEE
T ss_pred cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-CceeE--------eeccCCCccccceEECCCC-CEEEE
Confidence 4556788999999 78877665 32 4688888873 32222 1122 2357889999999 77776
Q ss_pred EeCC-----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-------------
Q 011368 272 SSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD------------- 332 (487)
Q Consensus 272 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~------------- 332 (487)
++.+ +.|.+||+.+++.. ..... .... +.|+| ||++++++.
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~----~l~~~---------------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 255 VSYFKGQTDRVIYKANPETLENE----EVMVM---------------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp EEEETTTCCEEEEEECTTTCCEE----EEEEC---------------CSEE-EEEECSSSSEEEEEECCC----------
T ss_pred EecCCCCccceEEEEECCCCCeE----EeeeC---------------CCCC-CCccCCCCceEEEecCCcceeecccccc
Confidence 6543 45999999887532 11111 1123 88999 999888642
Q ss_pred ----CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeC
Q 011368 333 ----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 400 (487)
Q Consensus 333 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~ 400 (487)
+..|++||+.+ +.. ..+..+...... ...+....+..++|+|||+.|+.++. ++...||.+.
T Consensus 315 ~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 315 NIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCCCcEEEEeccc-Cce-EEccCCCCcccc----ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 27899999975 443 334333321000 00000000136889999998887664 4555555443
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=2.4e-13 Score=126.04 Aligned_cols=231 Identities=9% Similarity=0.081 Sum_probs=144.2
Q ss_pred CcEEEEEEcCCCCEEEEEecC---Cc--EEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRG---GR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+.+++|||||++||.++.+ +. |.+|++.+++. ..+..+.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~----------------------------~~l~~~~------ 104 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS----------------------------KKILEAK------ 104 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE----------------------------EEEEEES------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce----------------------------EEEEcCC------
Confidence 468889999999999987754 34 66667665532 1122222
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCC---------------------------CcEEEEEccccce-eEeeecCCCC
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTND---------------------------KTIKLWKVRDQKV-KKIKEMDHFP 159 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~-~~~~~~~~~~ 159 (487)
. +..++| +|+|+.|+.++.+ ..|.+||+.+++. ..+
T Consensus 105 ------~-~~~~~w--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l------- 168 (347)
T 2gop_A 105 ------N-IRSLEW--NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF------- 168 (347)
T ss_dssp ------E-EEEEEE--CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE-------
T ss_pred ------C-ccceeE--CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee-------
Confidence 4 888999 6899988887643 4577777766654 221
Q ss_pred ceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC------C-eEEEEE
Q 011368 160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD------L-RINLWN 231 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d------~-~i~iwd 231 (487)
.. . .+..++|+|+| +++++ .+ . ...+|.
T Consensus 169 -----------------------------------------~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~ 204 (347)
T 2gop_A 169 -----------------------------------------EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYI 204 (347)
T ss_dssp -----------------------------------------EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred -----------------------------------------cC-C-CcccccCCCCe-EEEEEecccccccccccccEEE
Confidence 22 2 67889999999 77776 43 2 445555
Q ss_pred ccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC--------CeEEEEEccCCccccccceeeccccccc
Q 011368 232 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSALCDHSARILRDAAESH 303 (487)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~h~~~~ 303 (487)
++ .+....+ ..+ ..+..+ +|+| +.|+.++.+ ..|.+|| +++.. .....
T Consensus 205 ~d-~~~~~~l--------~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~~----- 260 (347)
T 2gop_A 205 WE-DGKEEKM--------FEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILDE----- 260 (347)
T ss_dssp EE-TTEEEEE--------EEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESSTT-----
T ss_pred eC-CCceEEe--------ccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCceE----ecccc-----
Confidence 55 4443332 122 344444 9999 878777644 3677777 43321 22222
Q ss_pred CccccccccccceeE-EEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC
Q 011368 304 GSKSFFTEIIASISD-IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 381 (487)
Q Consensus 304 ~~~~~~~~~~~~v~~-v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 381 (487)
+...+.. +.|+ ++ +++++. ++.++|| +.. +.....+. +... +.+++|+|
T Consensus 261 --------~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~~~~~~~-~~~~---------------v~~~~~s~- 311 (347)
T 2gop_A 261 --------VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GEIKPIAK-GRHW---------------IMGFDVDE- 311 (347)
T ss_dssp --------CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SSEEEEEC-SSSE---------------EEEEEESS-
T ss_pred --------CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-CceEEEec-CCCe---------------EEeeeeeC-
Confidence 2456776 8999 88 777764 5899999 873 55433333 2322 25899999
Q ss_pred CCEEEEEcCCCcE-EEEEeCCCCceeEEEeccCC
Q 011368 382 GLHFATGSYSNLL-RIFSHGVGSAGGITVEAGKN 414 (487)
Q Consensus 382 ~~~l~sg~~dg~i-~iwd~~~~~~~~~~~~~~~~ 414 (487)
.++++++.++.. .||.+. ++ ...+..|..
T Consensus 312 -~~~~~~~~~~~~~~l~~~~-g~--~~~lt~~n~ 341 (347)
T 2gop_A 312 -IVVYLKETATRLRELFTWD-GE--EKQLTDYND 341 (347)
T ss_dssp -SEEEEEECSSSCCEEEEES-SS--EEECCCTTS
T ss_pred -cEEEEEcCCCChHHheEeC-Cc--EEEeccccH
Confidence 677777777665 788776 42 334444443
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=2.5e-12 Score=114.50 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=167.7
Q ss_pred CCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEE
Q 011368 42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 121 (487)
Q Consensus 42 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~ 121 (487)
..+++|++++.++.|.+||.++++. +-.+..+.. ..+.++.+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~---------------------------~w~~~~~~~-----------~~~~~~~~ 44 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEI---------------------------VWEYPLEKG-----------WECNSVAA 44 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEE---------------------------EEEEECCTT-----------CCCCEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeE---------------------------EEEeCCCcc-----------CCCcCeEE
Confidence 3568899999999999999877764 244444320 24788888
Q ss_pred EecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecc
Q 011368 122 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPH 201 (487)
Q Consensus 122 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (487)
.|+|++++ +.++.|..||. +++.+.... .
T Consensus 45 --~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~----------------------------------------------~ 73 (276)
T 3no2_A 45 --TKAGEILF--SYSKGAKMITR-DGRELWNIA----------------------------------------------A 73 (276)
T ss_dssp --CTTSCEEE--ECBSEEEEECT-TSCEEEEEE----------------------------------------------C
T ss_pred --CCCCCEEE--eCCCCEEEECC-CCCEEEEEc----------------------------------------------C
Confidence 57898888 45778999998 666554321 1
Q ss_pred cCCCceeEEEeCCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368 202 AHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 279 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 279 (487)
.....+.++.+.++|+++++. . ++.|..+|.+ ++.+..+.... ....+......+.+.++| +++++...++.|.
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~ 149 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG-NYLVPLFATSEVR 149 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-CEEEEETTTTEEE
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-CEEEEecCCCEEE
Confidence 223457888999999999997 6 7777777764 44443332221 111222234556788999 9999999999999
Q ss_pred EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccc
Q 011368 280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 358 (487)
Q Consensus 280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~ 358 (487)
.||.. ++.+ ..+.. ......+...++|+.++++.+ +.|..+|..+ ++.+..+......-
T Consensus 150 ~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~ 209 (276)
T 3no2_A 150 EIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-NRIVRRVNANDIEG 209 (276)
T ss_dssp EECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-CCEEEEEEGGGSBS
T ss_pred EECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-CcEEEEecCCCCCC
Confidence 99988 7644 44443 134566788899999998765 7899999987 88888887443110
Q ss_pred cccccccCCCCcceeeEEEEcCCCCEEEEEcCC--------CcEEEEEeCCCCceeEEEecc
Q 011368 359 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~ 412 (487)
.....+..++..++|..+++.... +..+++++...++.+.++...
T Consensus 210 ---------~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 210 ---------VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp ---------CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred ---------ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 012234688899999988876321 244677775444555555444
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=1.6e-11 Score=120.14 Aligned_cols=309 Identities=13% Similarity=0.058 Sum_probs=177.8
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEee--CCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (487)
...+..+.|+|||+++++++.|+.|.+||+. +.+. +..+...
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~---------------------------v~~i~~G--------- 239 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---------------------------VAEIKIG--------- 239 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---------------------------EEEEECC---------
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---------------------------eEEEecC---------
Confidence 4457799999999999999999999999985 4432 2333322
Q ss_pred cccccceeEEEEEec----CCCcEEEEEe-CCCcEEEEEccccceeEeeecCC----------CCceeeeeccccccccc
Q 011368 110 LEIEEKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDH----------FPFVSSENTLLAEKNFM 174 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 174 (487)
.....++| + |+|+++++++ .+++|.++|..+.+......... .+.+..+..+.....++
T Consensus 240 ----~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 240 ----SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp ----SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred ----CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 33578888 5 5898888776 56999999988877765533211 11223332222211111
Q ss_pred cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeec-CCCCCCC
Q 011368 175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-KPSNMDD 251 (487)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~ 251 (487)
... .... .+....+..................++.|+|++++++++ .++.|.++|+.+ ++....+.. . ...
T Consensus 314 v~~-~~~g-~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg---~~P 387 (567)
T 1qks_A 314 VNV-KETG-KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGG---QTP 387 (567)
T ss_dssp EEE-TTTT-EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSS---SSB
T ss_pred EEe-cCCC-eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccC---cCC
Confidence 111 1111 111111111111111111233456788999999998775 789999999995 445554432 1 123
Q ss_pred CCC-cEEEEEEecCCCCEEEEEe-CCCeEEEEEccCCccc---cccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368 252 LTE-VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 326 (487)
Q Consensus 252 ~~~-~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~ 326 (487)
|.+ .+. + ++|++...++++. .++.|.++|....+.. .+.++.+... ...-..+..+|+++
T Consensus 388 hpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-------------g~g~~~i~~~p~~~ 452 (567)
T 1qks_A 388 HPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-------------GGGSLFIKTHPNSQ 452 (567)
T ss_dssp CCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-------------CSCCCCEECCTTCS
T ss_pred CCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-------------CCCCEEEEeCCCCC
Confidence 432 222 2 6887525555554 4689999999873211 0111333320 12224467899999
Q ss_pred EEEEEe--------CCeEEEEeCCCC-----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc----
Q 011368 327 HLLSRD--------YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---- 389 (487)
Q Consensus 327 ~l~s~~--------d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~---- 389 (487)
++.+.. .++|.++|+.+. ......+...+- ..+. +....+..+.|+|+|+++..+.
T Consensus 453 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~G~~~~~s~~~~~ 525 (567)
T 1qks_A 453 YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW-----AGIT--EGQPRVVQGEFNKDGTEVWFSVWNGK 525 (567)
T ss_dssp EEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH-----HTCC--SSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred eEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccc-----cccC--CCCcceEeeeECCCCCEEEEEeecCC
Confidence 988754 259999999863 222233321000 0000 0001235899999999887663
Q ss_pred -CCCcEEEEEeCCCCceeEEEec
Q 011368 390 -YSNLLRIFSHGVGSAGGITVEA 411 (487)
Q Consensus 390 -~dg~i~iwd~~~~~~~~~~~~~ 411 (487)
.++.|.|+|.++++ +...++.
T Consensus 526 ~~~~~i~v~D~~t~~-~~~~i~~ 547 (567)
T 1qks_A 526 DQESALVVVDDKTLE-LKHVIKD 547 (567)
T ss_dssp TSCCEEEEEETTTTE-EEEEECC
T ss_pred CCCCcEEEEECCCce-EEEEeCC
Confidence 36899999999874 3555543
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=5e-11 Score=107.78 Aligned_cols=237 Identities=8% Similarity=0.031 Sum_probs=160.5
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...+.+++++++|++.++...++.|.+|+.. ++.. . ..+..+.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-------------------------~-~~~~~~~---------- 61 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-------------------------E-FEVPTPD---------- 61 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-------------------------E-EECCCCC----------
Confidence 3468999999999988877678899999866 3210 0 1112222
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
..+..+++ .+++.++++...++.|..+|.. ++.....
T Consensus 62 --~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~-------------------------------------- 98 (300)
T 2qc5_A 62 --AKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEYP-------------------------------------- 98 (300)
T ss_dssp --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred --CcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEec--------------------------------------
Confidence 56888988 5778877777667889999987 5443221
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
.......+.++++.++++++++. .++.|..+|.. +. .... .+......+.++++++++ ++++
T Consensus 99 --------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~------~~~~~~~~~~~i~~d~~g-~l~v 161 (300)
T 2qc5_A 99 --------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IYEY------DLPNKGSYPAFITLGSDN-ALWF 161 (300)
T ss_dssp --------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEE------ECSSTTCCEEEEEECTTS-SEEE
T ss_pred --------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EEEc------cCCCCCCCceeEEECCCC-CEEE
Confidence 12233568899999999988888 78899999887 33 2221 122234568999999999 7666
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~ 349 (487)
+...++.|..+|. +++.. .+.. ..+...+..+++.++|.+.++... +.|.+||. . +....
T Consensus 162 ~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~ 222 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLE-----EYPL-----------PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-T-GEISE 222 (300)
T ss_dssp EETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEE
T ss_pred EecCCCeEEEECC-CCcEE-----EeeC-----------CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-C-CcEEE
Confidence 6666789999998 44322 1211 011346789999999987776644 78999998 3 33322
Q ss_pred e-eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 350 T-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 350 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
. +..... .+.+++++++|++.++...++.|..|+.
T Consensus 223 ~~~~~~~~---------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 223 YDIPTPNA---------------RPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EECSSTTC---------------CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EECCCCCC---------------CceEEEECCCCCEEEeccCCCeEEEECC
Confidence 2 111111 1258999999997777767789999997
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=2.7e-12 Score=117.80 Aligned_cols=199 Identities=13% Similarity=-0.025 Sum_probs=132.6
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.....+.+ .+++++++...++.|.+||..+++.....
T Consensus 44 ~~~~~i~~---~~~~lyv~~~~~~~v~viD~~t~~~~~~i---------------------------------------- 80 (328)
T 3dsm_A 44 DVAQSMVI---RDGIGWIVVNNSHVIFAIDINTFKEVGRI---------------------------------------- 80 (328)
T ss_dssp SCEEEEEE---ETTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------------------
T ss_pred ccceEEEE---ECCEEEEEEcCCCEEEEEECcccEEEEEc----------------------------------------
Confidence 34567777 24566666777899999999988765431
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
........++++++++.+++. .++.|.+||..+. +....+.... ..+.......+++ ..+ .++++.
T Consensus 81 --------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~-~~~~~i~~g~--~~~~~~~p~~i~~-~~~-~lyv~~ 147 (328)
T 3dsm_A 81 --------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY-EITGYIECPD--MDMESGSTEQMVQ-YGK-YVYVNC 147 (328)
T ss_dssp --------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT-EEEEEEECTT--CCTTTCBCCCEEE-ETT-EEEEEE
T ss_pred --------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC-eEEEEEEcCC--ccccCCCcceEEE-ECC-EEEEEc
Confidence 123557889998888666666 7999999999844 4443332210 0111123456666 344 444444
Q ss_pred e-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C----------CeEEEEe
Q 011368 273 S-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----------MNLKLWD 340 (487)
Q Consensus 273 ~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d----------~~i~iwd 340 (487)
. .++.|.++|+.+++.. ..+.. ......+.++|+|++++++. + +.|.++|
T Consensus 148 ~~~~~~v~viD~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id 209 (328)
T 3dsm_A 148 WSYQNRILKIDTETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID 209 (328)
T ss_dssp CTTCCEEEEEETTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred CCCCCEEEEEECCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence 3 4889999999987654 33333 13456788999999777753 2 6899999
Q ss_pred CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
..+ .+....+....... ...++++|+++.|+++.. .|.+||..+++
T Consensus 210 ~~t-~~v~~~~~~~~g~~--------------p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 210 AET-FTVEKQFKFKLGDW--------------PSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp TTT-TEEEEEEECCTTCC--------------CEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred CCC-CeEEEEEecCCCCC--------------ceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 986 66665555322110 158999999999888765 89999998763
No 194
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=1.8e-11 Score=111.54 Aligned_cols=246 Identities=11% Similarity=0.122 Sum_probs=156.3
Q ss_pred cEEEEEEcCCCCEEEE-------EecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEee--ecCCCccc
Q 011368 34 IVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEF 104 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~-------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~ 104 (487)
...+++|+++|+++++ +..++.|.+|+..+++.. .... ..++.
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------------~~~~~~~~~~~--- 70 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------------------------VICKPEVNGYG--- 70 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-------------------------EEECCEETTEE---
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-------------------------EEEecccCCCC---
Confidence 4679999999998888 677889999997666421 0000 01122
Q ss_pred ccccccccccceeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCc
Q 011368 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 105 ~~~~~~~~~~~I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
..+..+++ +++ +.++++.. .+.|.+||.. ++.... ....
T Consensus 71 ---------~~~~~i~~--~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~-------------------------- 111 (314)
T 1pjx_A 71 ---------GIPAGCQC--DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDS-------------------------- 111 (314)
T ss_dssp ---------CCEEEEEE--CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCT--------------------------
T ss_pred ---------CCCceEEE--ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccC--------------------------
Confidence 56889998 567 65555443 4478899987 654322 1000
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------------CeEEEEEccCCCceeEEeecCC
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLWNLEISDQCFNIVDMKP 246 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------------~~i~iwd~~~~~~~~~~~~~~~ 246 (487)
.......+.+++++++|+++++. .+ +.|..|+.. +......
T Consensus 112 -----------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~---- 168 (314)
T 1pjx_A 112 -----------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQVD---- 168 (314)
T ss_dssp -----------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEEE----
T ss_pred -----------------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCEEEec----
Confidence 01123457899999999988887 54 566666654 3322221
Q ss_pred CCCCCCCCcEEEEEEe----cCCCCEEEEE-eCCCeEEEEEcc-CCccccccceeecccccccCccccccccc-cceeEE
Q 011368 247 SNMDDLTEVITSAEFH----PIYCNLLAYS-SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEII-ASISDI 319 (487)
Q Consensus 247 ~~~~~~~~~v~~v~~~----p~~~~~l~~~-~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~~v~~v 319 (487)
.+......++|+ |++ +.++.+ ..++.|.+||+. .++... ...+.. +.++. ..+..+
T Consensus 169 ----~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~----------~~~~~~~~p~~i 231 (314)
T 1pjx_A 169 ----TAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH----------IPGTHEGGADGM 231 (314)
T ss_dssp ----EEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE----------CCCCSSCEEEEE
T ss_pred ----cCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE----------CCCCCCCCCCce
Confidence 122346889999 998 666555 467899999987 333110 011111 11112 457889
Q ss_pred EEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEE-EEEcCCCcEEEE
Q 011368 320 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIF 397 (487)
Q Consensus 320 ~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~sg~~dg~i~iw 397 (487)
+++++|+++++.. ++.|.+||..+ ++.+..+..+... +.+++|+|+|+.| ++...++.|..|
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCC---------------ceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 9999998888764 58999999875 5555555544221 2589999999955 455567899999
Q ss_pred EeCCC
Q 011368 398 SHGVG 402 (487)
Q Consensus 398 d~~~~ 402 (487)
++...
T Consensus 296 ~~~~~ 300 (314)
T 1pjx_A 296 EWQRN 300 (314)
T ss_dssp ECSSC
T ss_pred eCCCC
Confidence 98754
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=9.2e-12 Score=110.85 Aligned_cols=199 Identities=11% Similarity=0.072 Sum_probs=141.7
Q ss_pred CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD 204 (487)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
..+++|++++.|+.|.+||..+++..... ..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~-----------------------------------------------~~~~ 35 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEY-----------------------------------------------PLEK 35 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEE-----------------------------------------------ECCT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEe-----------------------------------------------CCCc
Confidence 34688999999999999999888866542 2222
Q ss_pred -CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEEEEE
Q 011368 205 -FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVD 282 (487)
Q Consensus 205 -~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd 282 (487)
..+.++.++|+|++++ +.++.|..||.. ++...+. .. +....+.++.+.|+| +++++.+. ++.+..+|
T Consensus 36 ~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~~~W~~-~~------~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd 105 (276)
T 3no2_A 36 GWECNSVAATKAGEILF-SYSKGAKMITRD-GRELWNI-AA------PAGCEMQTARILPDG-NALVAWCGHPSTILEVN 105 (276)
T ss_dssp TCCCCEEEECTTSCEEE-ECBSEEEEECTT-SCEEEEE-EC------CTTCEEEEEEECTTS-CEEEEEESTTEEEEEEC
T ss_pred cCCCcCeEECCCCCEEE-eCCCCEEEECCC-CCEEEEE-cC------CCCccccccEECCCC-CEEEEecCCCCEEEEEe
Confidence 4678999999999988 556679999983 5544432 11 122467889999999 99988887 77888887
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL 361 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 361 (487)
. +++.+ ..+.. .. . ...+......+.+.++|+++++.. ++.|..||.. ++.+..+.....+
T Consensus 106 ~-~Gk~l----~~~~~-~~--~----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~---- 167 (276)
T 3no2_A 106 M-KGEVL----SKTEF-ET--G----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGTP---- 167 (276)
T ss_dssp T-TSCEE----EEEEE-CC--S----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSCC----
T ss_pred C-CCCEE----EEEec-cC--C----CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCCc----
Confidence 6 45433 22322 00 0 011123455667899999999885 4999999985 7888888765332
Q ss_pred ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368 362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 411 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 411 (487)
.++...++|+.+++++.++.|..+|..+++. +..+..
T Consensus 168 ------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-~w~~~~ 204 (276)
T 3no2_A 168 ------------FSSAFLDNGDCLVACGDAHCFVQLNLESNRI-VRRVNA 204 (276)
T ss_dssp ------------CEEEECTTSCEEEECBTTSEEEEECTTTCCE-EEEEEG
T ss_pred ------------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-EEEecC
Confidence 3778889999999999888999999988844 455543
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=2.4e-12 Score=131.88 Aligned_cols=244 Identities=11% Similarity=0.060 Sum_probs=148.7
Q ss_pred CcEEEEEEcCCCCEEEEEecC-----CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..+..++|||||++||.+..+ ..|++||+.+++.. . ...+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~---------------------------~-~~~~~------ 208 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL---------------------------A-DELKW------ 208 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE---------------------------E-EEEEE------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---------------------------C-ccCCC------
Confidence 368899999999999887643 35999999888631 1 11111
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCc--------------EEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKT--------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
..+..++| +|| +.|+.++.++. |++|++.++.....
T Consensus 209 ------~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--------------------- 258 (741)
T 1yr2_A 209 ------VKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ--------------------- 258 (741)
T ss_dssp ------EESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE---------------------
T ss_pred ------ceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE---------------------
Confidence 22357889 678 88888776554 77788765542110
Q ss_pred ccccCCCCcceeeeeeeeccceeeee-cccCCCceeEEEeCCCCCEEEEe-cCC-----eEEEEEccCCCce-eEEeecC
Q 011368 174 MNEHNPPSFAHGYHLEWTENMATKVY-PHAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEISDQC-FNIVDMK 245 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~-~d~-----~i~iwd~~~~~~~-~~~~~~~ 245 (487)
..+ ...+...+..+.|+|||++|+.. .++ .|++||+.++... ...+
T Consensus 259 -----------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--- 312 (741)
T 1yr2_A 259 -----------------------PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL--- 312 (741)
T ss_dssp -----------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE---
T ss_pred -----------------------EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe---
Confidence 000 12333458899999999998886 543 8999999854211 2222
Q ss_pred CCCCCCCCCcEEEEEEecCCCCEEEEEeC----CCeEEEEEccCCc-cccccceeecccccccCccccccccccceeEEE
Q 011368 246 PSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIK 320 (487)
Q Consensus 246 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~ 320 (487)
..+...+... ++|+| ..|+..+. ++.|.+||+.++. .. ...+.. +...+..+.
T Consensus 313 ----~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~~~-------------~~~~l~~~~ 370 (741)
T 1yr2_A 313 ----IPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVVPE-------------SKDNLESVG 370 (741)
T ss_dssp ----ECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE---EEEECC-------------CSSEEEEEE
T ss_pred ----cCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc---EEEecC-------------CCCeEEEEE
Confidence 2233333444 34888 77777765 3469999987742 11 122222 234566777
Q ss_pred EcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE----EcCCCcEE
Q 011368 321 FANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT----GSYSNLLR 395 (487)
Q Consensus 321 ~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s----g~~dg~i~ 395 (487)
++ ++.++++. .++..+||.+...+.....+..+... .+..++++|+++.|+. ....++|+
T Consensus 371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 371 IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIG--------------SASGLSGRPGDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSC--------------EEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCe--------------EEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 77 45555555 45766666554224555555432111 1247889999886662 23457899
Q ss_pred EEEeCCCC
Q 011368 396 IFSHGVGS 403 (487)
Q Consensus 396 iwd~~~~~ 403 (487)
+||+.+++
T Consensus 436 ~~d~~tg~ 443 (741)
T 1yr2_A 436 ALDPATAK 443 (741)
T ss_dssp EEETTTTE
T ss_pred EEECCCCc
Confidence 99998774
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=5.3e-12 Score=129.29 Aligned_cols=237 Identities=9% Similarity=-0.003 Sum_probs=142.7
Q ss_pred cCCCceeEEEeCCCCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368 202 AHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 275 (487)
+|...+..++|||||+.|+.+ .+ ..|++||+.++. ..... . +...+..++|+|+ +.|+.++.+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~-~~~~~------~--~~~~~~~~~wspD--~~l~~~~~~ 228 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK-PLADE------L--KWVKFSGLAWLGN--DALLYSRFA 228 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC-EEEEE------E--EEEESCCCEESTT--SEEEEEECC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-CCCcc------C--CCceeccEEEECC--CEEEEEEec
Confidence 344568899999999999887 32 369999999544 33210 0 1111246889998 455555554
Q ss_pred C--------------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-----Ce
Q 011368 276 G--------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MN 335 (487)
Q Consensus 276 g--------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-----~~ 335 (487)
+ .|.+|++.++.... ...+.. ..+...+..+.|||||++|+... + ..
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSAD--QPVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGC--EEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred CcccccccccCCCCCEEEEEECCCCchhC--EEEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 3 38889887654211 122222 11223578999999999888653 2 48
Q ss_pred EEEEeCCCCCce-eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC----CcEEEEEeCCCC-ceeEEE
Q 011368 336 LKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS-AGGITV 409 (487)
Q Consensus 336 i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d----g~i~iwd~~~~~-~~~~~~ 409 (487)
|++||+.+.... ...+..+.... ... ++|+|+.|+..+.+ +.|.+||+.++. .....+
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred EEEEECCCCCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence 999999762112 44444433221 133 45889988877653 459999998752 333344
Q ss_pred eccCCccccceEeeCCccccccccceeeecccce-ecC--C-CCCcccccc-ccCCCeEEEEEcCCCCEEEEec--C---
Q 011368 410 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSY-NLSSKLLHLAWHPTTNLIACAN--G--- 479 (487)
Q Consensus 410 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~-~~~~~~~~~-~~~~~v~~~~~spd~~~la~~s--~--- 479 (487)
..+...+..+.+. ++.+ +++...++. ++| . .++...... .....|..++++||++.|+... .
T Consensus 360 ~~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 431 (741)
T 1yr2_A 360 PESKDNLESVGIA---GNRL-----FASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQP 431 (741)
T ss_dssp CCCSSEEEEEEEE---BTEE-----EEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred cCCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 4444444444444 4445 778888887 888 3 233222222 2356788999999998766432 2
Q ss_pred CeEEEEe
Q 011368 480 NSLFFHY 486 (487)
Q Consensus 480 ~~~~i~~ 486 (487)
..+|+|+
T Consensus 432 ~~i~~~d 438 (741)
T 1yr2_A 432 ATVLALD 438 (741)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 3477775
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=1.1e-11 Score=113.79 Aligned_cols=247 Identities=8% Similarity=0.055 Sum_probs=156.5
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
+....+++. +++++++...++.|.+||..+++. +.++.. .
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------~~~i~~-~----------- 83 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------VGRITG-F----------- 83 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEEC-C-----------
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------EEEcCC-C-----------
Confidence 346778875 355556666789999999887764 233422 2
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
.....++++ +++.++++...++.|.+||..+++.........
T Consensus 84 -~~p~~i~~~--~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~----------------------------------- 125 (328)
T 3dsm_A 84 -TSPRYIHFL--SDEKAYVTQIWDYRIFIINPKTYEITGYIECPD----------------------------------- 125 (328)
T ss_dssp -SSEEEEEEE--ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTT-----------------------------------
T ss_pred -CCCcEEEEe--CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCC-----------------------------------
Confidence 457889984 566555555489999999999887654321110
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
..+.......+++ .+++++++. . ++.|.++|..+. .....+.. ......+.++|+| ++++
T Consensus 126 -------~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~--------g~~p~~i~~~~dG-~l~v 187 (328)
T 3dsm_A 126 -------MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD-KVVDELTI--------GIQPTSLVMDKYN-KMWT 187 (328)
T ss_dssp -------CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT-EEEEEEEC--------SSCBCCCEECTTS-EEEE
T ss_pred -------ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEc--------CCCccceEEcCCC-CEEE
Confidence 0111224456667 345555554 3 899999999854 44433311 1234678899998 7666
Q ss_pred EEeCC----------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368 271 YSSSR----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 340 (487)
Q Consensus 271 ~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd 340 (487)
++..+ +.|.++|..+++.. ..+... .......++++|+++.|.++.. .|.+||
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~------------~g~~p~~la~~~d~~~lyv~~~-~v~~~d 250 (328)
T 3dsm_A 188 ITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFK------------LGDWPSEVQLNGTRDTLYWINN-DIWRMP 250 (328)
T ss_dssp EBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECC------------TTCCCEEEEECTTSCEEEEESS-SEEEEE
T ss_pred EECCCccCCccccCCceEEEEECCCCeEE----EEEecC------------CCCCceeEEEecCCCEEEEEcc-EEEEEE
Confidence 66554 78999999887643 233220 0125789999999999888764 899999
Q ss_pred CCCCCceee-e-eecccccccccccccCCCCcceeeEEEEcC-CCCEEEEE----cCCCcEEEEEeCCCCceeEEEe
Q 011368 341 IRMDSTPVA-T-FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG----SYSNLLRIFSHGVGSAGGITVE 410 (487)
Q Consensus 341 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg----~~dg~i~iwd~~~~~~~~~~~~ 410 (487)
..+ ++... . +..... ....++++| ++...++. ..++.|.+||.. + .....+.
T Consensus 251 ~~t-~~~~~~~~~~~~~~---------------~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~~i~ 309 (328)
T 3dsm_A 251 VEA-DRVPVRPFLEFRDT---------------KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLIDEFY 309 (328)
T ss_dssp TTC-SSCCSSCSBCCCSS---------------CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEEEEE
T ss_pred CCC-CceeeeeeecCCCC---------------ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEEEEE
Confidence 976 44321 1 111000 115899999 55666665 578999999987 5 3344443
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=5.1e-11 Score=106.04 Aligned_cols=197 Identities=8% Similarity=0.020 Sum_probs=128.7
Q ss_pred ceeEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 115 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
...++++ ++++.+++ +...++.|.+|+..+......
T Consensus 25 ~p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~----------------------------------------- 61 (270)
T 1rwi_B 25 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVL----------------------------------------- 61 (270)
T ss_dssp CEEEEEE--CTTCCEEEEECSSSCEEEEECC-----EEC-----------------------------------------
T ss_pred CccceEE--CCCCCEEEEccCCCCcEEEecCCCcccceE-----------------------------------------
Confidence 6788999 57888776 446788999998765442211
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
...+...+.+++++++++++++..++.|..||... .... .+ .......+.+++++|+| .++++..
T Consensus 62 ------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~-~~~~-~~------~~~~~~~p~~i~~~~~g-~l~v~~~ 126 (270)
T 1rwi_B 62 ------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS-NNQT-VL------PFDGLNYPEGLAVDTQG-AVYVADR 126 (270)
T ss_dssp ------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC-SCCE-EC------CCCSCSSEEEEEECTTC-CEEEEEG
T ss_pred ------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC-ceEe-ee------ecCCcCCCcceEECCCC-CEEEEEC
Confidence 02233457889999999865555788999999873 3222 11 01223568999999999 8777777
Q ss_pred CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeee
Q 011368 274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~ 352 (487)
.++.|.+|+..+.... ..... ....+..++++++|+++++.. ++.|.+||... ........
T Consensus 127 ~~~~i~~~~~~~~~~~----~~~~~-------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~ 188 (270)
T 1rwi_B 127 GNNRVVKLAAGSKTQT----VLPFT-------------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPF 188 (270)
T ss_dssp GGTEEEEECTTCCSCE----ECCCC-------------SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCC
T ss_pred CCCEEEEEECCCceeE----eeccc-------------cCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeecc
Confidence 7889999976543211 10001 123578899999998766664 48999999875 33222111
Q ss_pred cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.... .+..++++++|.++++...++.|.+|+....
T Consensus 189 ~~~~---------------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 189 TDIT---------------APWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp SSCC---------------SEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred cCCC---------------CceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 1111 1258999999988887778889999997644
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=3.6e-11 Score=109.65 Aligned_cols=204 Identities=12% Similarity=0.051 Sum_probs=130.2
Q ss_pred cceeEEEEEecCCCcEEEE-------EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368 114 EKINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (487)
....+++| .+++.++++ ...++.|.+||..+++.......
T Consensus 18 ~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------------------------- 64 (314)
T 1pjx_A 18 PGAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP------------------------------- 64 (314)
T ss_dssp TTCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-------------------------------
T ss_pred CCccCceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-------------------------------
Confidence 45688999 577877777 57788999999887765433100
Q ss_pred eeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEecCCeEEEEEccCCCceeEE-eecCCCCCCCCCCcEEEEEEecC
Q 011368 187 HLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMDDLTEVITSAEFHPI 264 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~ 264 (487)
. ..++...+.+++++++ ++++++.....|.+||.+ +. ...+ ... ........+.+++++++
T Consensus 65 -----------~-~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~-~~~~~~~~---~~~~~~~~~~~i~~d~~ 127 (314)
T 1pjx_A 65 -----------E-VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT-FEEIAKKD---SEGRRMQGCNDCAFDYE 127 (314)
T ss_dssp -----------E-ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC-EEECCSBC---TTSCBCBCCCEEEECTT
T ss_pred -----------c-cCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC-EEEEEecc---CCCccccCCcCEEECCC
Confidence 0 0224456889999999 776666654588899987 33 2221 100 00112245789999999
Q ss_pred CCCEEEEEeCC---------------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc----CCC
Q 011368 265 YCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA----NDG 325 (487)
Q Consensus 265 ~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s----~~~ 325 (487)
| .++++...+ +.|..||.. ++.. ..... ......++++ |++
T Consensus 128 g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~~--------------~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 128 G-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDTA--------------FQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp S-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEEE--------------ESSEEEEEEEECTTSCE
T ss_pred C-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----EeccC--------------CCCcceEEEecccCCCC
Confidence 8 777776654 567777655 3321 11111 2346788999 999
Q ss_pred CEEEEEe--CCeEEEEeCCCCCce-----eeeeeccc-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEE
Q 011368 326 QHLLSRD--YMNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 397 (487)
Q Consensus 326 ~~l~s~~--d~~i~iwd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iw 397 (487)
+.|..+. ++.|.+||+...+.. ...+..+. . ....++++++|+++++...++.|.+|
T Consensus 188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG---------------GADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC---------------EEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC---------------CCCceEECCCCCEEEEEcCCCEEEEE
Confidence 7666553 489999997621321 11222111 1 11489999999988887788899999
Q ss_pred EeCCC
Q 011368 398 SHGVG 402 (487)
Q Consensus 398 d~~~~ 402 (487)
|..++
T Consensus 253 d~~~g 257 (314)
T 1pjx_A 253 GPDGG 257 (314)
T ss_dssp CTTCB
T ss_pred cCCCC
Confidence 98755
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.6e-10 Score=104.39 Aligned_cols=232 Identities=9% Similarity=0.076 Sum_probs=148.3
Q ss_pred cEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 34 ~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
-.-+..|+|++ .++++...++.|..||..+++. ..+. ..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~----------- 53 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----------------------------QRVT-MD----------- 53 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----------------------------EEEE-CS-----------
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEe-CC-----------
Confidence 34578899965 4556666788999999876642 1111 12
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..+.++++ .++|+++++ . ++.|.+||..+++...+.....
T Consensus 54 -~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~----------------------------------- 93 (297)
T 3g4e_A 54 -APVSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN----------------------------------- 93 (297)
T ss_dssp -SCEEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT-----------------------------------
T ss_pred -CceEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC-----------------------------------
Confidence 56889999 578885554 3 5679999998876554321100
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 262 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (487)
......+++++++|+|+++++. .+ ..-.+|.+...+....+. ........++|+
T Consensus 94 --------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~pngi~~s 157 (297)
T 3g4e_A 94 --------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--------DQVDISNGLDWS 157 (297)
T ss_dssp --------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--------EEESBEEEEEEC
T ss_pred --------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--------eccccccceEEc
Confidence 1123457899999999988775 32 334666665333332221 222346789999
Q ss_pred cCCCCEE-EEEeCCCeEEEEEcc--CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEE
Q 011368 263 PIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 338 (487)
Q Consensus 263 p~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~i 338 (487)
|++ +.| ++.+.++.|.+||+. ++.... .+.+.. +..+......+++.++|++.++... +.|.+
T Consensus 158 pdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~ 224 (297)
T 3g4e_A 158 LDH-KIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEGKLWVACYNGGRVIR 224 (297)
T ss_dssp TTS-CEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTSCEEEEEETTTEEEE
T ss_pred CCC-CEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCCCEEEEEcCCCEEEE
Confidence 999 655 455567899999973 443210 111211 0112346788999999987777654 88999
Q ss_pred EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc-CCCCEEEEEcC
Q 011368 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 390 (487)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~l~sg~~ 390 (487)
||..+ ++.+..+..+...+ ++++|+ ||++.|+.++.
T Consensus 225 ~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 225 LDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred EcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence 99976 77777777653322 689998 88887665554
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=9.7e-10 Score=99.16 Aligned_cols=239 Identities=8% Similarity=0.010 Sum_probs=158.1
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...+.+++++++|+++++...++.|..|+.+ ++. +. ..+....
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-------------------------~~-~~~~~~~---------- 98 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-------------------------KE-YTLPNPD---------- 98 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-------------------------EE-EECSSTT----------
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-------------------------EE-EeCCCcC----------
Confidence 3568999999999988877768889999864 211 00 1111122
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
..+..+++ .+++.++++...++.|.+||. +++.....
T Consensus 99 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-------------------------------------- 135 (299)
T 2z2n_A 99 --SAPYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYE-------------------------------------- 135 (299)
T ss_dssp --CCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEE--------------------------------------
T ss_pred --CCceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEec--------------------------------------
Confidence 56888998 577887777777889999998 55433221
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
.......+..+++.++++++++. .++.|..||. ++. .... .+......+.+++++++| .+++
T Consensus 136 --------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~------~~~~~~~~~~~i~~~~~g-~l~v 198 (299)
T 2z2n_A 136 --------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD-ITEF------KIPTPASGPVGITKGNDD-ALWF 198 (299)
T ss_dssp --------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-EEEE------ECSSTTCCEEEEEECTTS-SEEE
T ss_pred --------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc-EEEe------eCCCCCCcceeEEECCCC-CEEE
Confidence 12234568899999999888888 7899999998 333 2221 122334568899999998 7777
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 349 (487)
+...++.|.+||. +++.. .+.. ..+...+..++++++|++.++. .++.|..||.. +. +.
T Consensus 199 ~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~-~~ 258 (299)
T 2z2n_A 199 VEIIGNKIGRITT-SGEIT-----EFKI-----------PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN--NI-IE 258 (299)
T ss_dssp EETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT--TE-EE
T ss_pred EccCCceEEEECC-CCcEE-----EEEC-----------CCCCCCceeEEECCCCCEEEeccCCceEEEECCC--Cc-eE
Confidence 7667889999998 55421 1211 0123568899999999876665 35899999983 33 33
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+...... ..+.++++ ++|.++++.. .+.+..++.+++
T Consensus 259 ~~~~~~~~-------------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 259 EYPIQIKS-------------AEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEECSSSS-------------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEeCCCCC-------------CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 33211110 01258888 8888777655 567778887755
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=7.5e-10 Score=102.94 Aligned_cols=256 Identities=10% Similarity=0.077 Sum_probs=152.1
Q ss_pred EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC-Ccccc
Q 011368 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (487)
.++|+|||++|+.+. .++.|.+||..+.+.. ..+.-- .+.+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---------------------------~~i~~~~~~~~- 121 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF- 121 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---------------------------EEEECCCcccc-
Confidence 899999999998886 3678999998766532 111110 0000
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCc
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
........++| +|+|++|+.+.. ++.|.++| .+++.... .
T Consensus 122 -----~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i----------------------------- 164 (373)
T 2mad_H 122 -----DVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL----------------------------- 164 (373)
T ss_pred -----ccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc-----------------------------
Confidence 00012356888 689999998874 57899999 88765432 1
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 260 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (487)
.... ++.+.|+++ .+++. .|+.+.++|. ++... ......+ ...+.........
T Consensus 165 -------------------~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~~~~~-~~~~~~p~~~~~~ 219 (373)
T 2mad_H 165 -------------------SSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GAGLVGA-MLTAAQNLLTQPA 219 (373)
T ss_pred -------------------CCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EEEeccc-cccCCcceeecce
Confidence 0111 234445543 33444 8899999999 44433 2111100 0111111123356
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--------
Q 011368 261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------- 332 (487)
Q Consensus 261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-------- 332 (487)
+.+++ ..++..+.++.+.+.|+..+.... ...+.......... .-.......+.++|+++.+....
T Consensus 220 ~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~~---~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 220 QANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKAD---TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCccccc---ceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 67776 555555578899999997653210 11121100000000 00012344578999998777642
Q ss_pred ---CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEc-CCCcEEEEEeCCCCce
Q 011368 333 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSAG 405 (487)
Q Consensus 333 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~-~dg~i~iwd~~~~~~~ 405 (487)
.+.|.++|+.+ .+.+..+.....+ ..++|+|||+ .++++. .++.|.+||+.+++..
T Consensus 294 ~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 294 HAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred cCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 15799999987 7777777654433 4899999999 777777 5899999999988553
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.41 E-value=2.7e-10 Score=104.51 Aligned_cols=248 Identities=10% Similarity=0.026 Sum_probs=149.9
Q ss_pred EEEcCCCCEEEEEec-----CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 38 IEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 38 ~~~s~~~~~l~~g~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
....|+++.++.... ++.|.+.|..+++. +.++..-.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------~~~I~vG~----------- 79 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF----------- 79 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS-----------
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------EEEEECCC-----------
Confidence 456799988888765 67899999887754 34443322
Q ss_pred ccceeEEEEEecCCCcEEEEEe----------CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368 113 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (487)
.+ . +++ +|+|++++.+. .++.|.+||..+.+...........
T Consensus 80 -~P-~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~----------------------- 131 (386)
T 3sjl_D 80 -LP-N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP----------------------- 131 (386)
T ss_dssp -SC-E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-----------------------
T ss_pred -CC-c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc-----------------------
Confidence 33 4 888 68999887765 3678999999988765542111000
Q ss_pred ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 259 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 259 (487)
+ .........++++|||++++++ . ++.|.++|+.+ .+....+.. .+ |.
T Consensus 132 --------------r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v-----~g------~~ 182 (386)
T 3sjl_D 132 --------------R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDV-----PD------CY 182 (386)
T ss_dssp --------------C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEEC-----CS------EE
T ss_pred --------------c---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEEC-----CC------cc
Confidence 0 0012345689999999998887 4 68999999995 445544321 11 12
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccce-eEEEE-cCCCCEEEEEeCCeE
Q 011368 260 EFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKF-ANDGQHLLSRDYMNL 336 (487)
Q Consensus 260 ~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-~~v~~-s~~~~~l~s~~d~~i 336 (487)
...|.+...+++.+.||.+.+.++.. ++... .... ...+. ...+ ....| .++|++++...+|.|
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~----~~~~-~~~~~--------~~~~~~~~~~~~~dG~~~~vs~~g~V 249 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTE-VFHPE--------DEFLINHPAYSQKAGRLVWPTYTGKI 249 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSSSCCEE----EECC-CCSCT--------TSCBCSCCEEETTTTEEEEEBTTSEE
T ss_pred eeecCCCceeEEECCCCCEEEEECCCCCeEEE----eecc-eeccc--------cccccccceeEcCCCcEEEEeCCCEE
Confidence 23354436778888899999999876 44321 1011 00000 1112 12355 478877776666999
Q ss_pred EEEeCCCCC-ceeeeeecc------cccccccccccCCCCcceeeEEEEcCCCCEEEEEcC----------CCcEEEEEe
Q 011368 337 KLWDIRMDS-TPVATFKIH------EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIFSH 399 (487)
Q Consensus 337 ~iwd~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~----------dg~i~iwd~ 399 (487)
++.|+.... ..+..+... ....+ +.. ..++++++++.|+.... .+.|.+.|+
T Consensus 250 ~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--------~g~---q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 250 HQIDLSSGDAKFLPAVEALTEAERADGWRP--------GGW---QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EEEECTTSSCEECCCEESSCHHHHHTTEEE--------CSS---SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEEECCCCcceeecceeccccccccccccC--------CCc---ceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 999997522 122222200 01000 000 24788999998887643 257889999
Q ss_pred CCCCc
Q 011368 400 GVGSA 404 (487)
Q Consensus 400 ~~~~~ 404 (487)
++++.
T Consensus 319 ~t~kv 323 (386)
T 3sjl_D 319 KTGER 323 (386)
T ss_dssp TTCCE
T ss_pred CCCeE
Confidence 88744
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=3.4e-10 Score=106.83 Aligned_cols=271 Identities=10% Similarity=0.046 Sum_probs=160.3
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
-.....|+|+++++++++...++.|++||.+++... ..... .
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------~~~~~-~---------- 171 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------TVHPG-F---------- 171 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------EEEET-C----------
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------Eeecc-C----------
Confidence 346889999999998787777889999998766431 11221 1
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.... ++| +++++.|+++..++ .|.+++..++.......
T Consensus 172 --~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g----------------------------------- 211 (409)
T 3hrp_A 172 --KGGK-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG----------------------------------- 211 (409)
T ss_dssp --CBCB-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE-----------------------------------
T ss_pred --CCCc-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEee-----------------------------------
Confidence 2234 888 67888888887765 68888876654321100
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE-E-EEEEecCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-T-SAEFHPIYC 266 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-~-~v~~~p~~~ 266 (487)
.........+.+++++|++..|+.+ .++.|+.||..... . .++... ...+....- . .++|+|++.
T Consensus 212 --------~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~-~~~~~~--~~~g~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 212 --------QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-V-TLIKQL--ELSGSLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp --------ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-E-EEEEEC--CCCSCCCCSSCCEEEEETTTT
T ss_pred --------eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-E-EEEecc--cccCCCCCCccccEEEeCCCC
Confidence 0001144567889999955555557 88899999998443 2 221000 011121111 3 899999542
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccc--cccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS--FFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR 342 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~ 342 (487)
.++++-..++.|+.|+..... ..+.++........ .....-.....++++|+|+++++-. . +.|+.|++.
T Consensus 280 ~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp EEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred EEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 666666678899999876531 22322110000000 0000113578999999999777755 4 899999976
Q ss_pred CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
. +. +..+.++.....................++++++|.++++-..++.|+.++++
T Consensus 354 ~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 354 D-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp T-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred C-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 4 44 44444431100000000000011223689999999888888888999888763
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.38 E-value=1.6e-09 Score=97.71 Aligned_cols=220 Identities=9% Similarity=0.099 Sum_probs=136.2
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.-..+..|++ .++.++++...++.|..||..++.....
T Consensus 13 ~~~Egp~w~~-~~~~l~~~d~~~~~i~~~d~~~~~~~~~----------------------------------------- 50 (297)
T 3g4e_A 13 RCGESPVWEE-VSNSLLFVDIPAKKVCRWDSFTKQVQRV----------------------------------------- 50 (297)
T ss_dssp SBEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEE-----------------------------------------
T ss_pred ccccCCeEEC-CCCEEEEEECCCCEEEEEECCCCcEEEE-----------------------------------------
Confidence 3456788953 2455666777889999999987764321
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
.....+.+++++++|+++++. +..|.+||.++ +....+.... .......+..++++|+| .++++..
T Consensus 51 --------~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~-g~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~ 116 (297)
T 3g4e_A 51 --------TMDAPVSSVALRQSGGYVATI-GTKFCALNWKE-QSAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTM 116 (297)
T ss_dssp --------ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTT-TEEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEE
T ss_pred --------eCCCceEEEEECCCCCEEEEE-CCeEEEEECCC-CcEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecC
Confidence 234568899999999955544 56899999874 3332222111 01123457899999999 7666543
Q ss_pred CC---------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCC
Q 011368 274 SR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR 342 (487)
Q Consensus 274 ~d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~ 342 (487)
.. ..-.||.+....... ..... ....+.++|+|+++.|+.++ .+.|.+|++.
T Consensus 117 ~~~~~~~~~~~~~~~l~~~d~~g~~~---~~~~~--------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 117 AEETAPAVLERHQGALYSLFPDHHVK---KYFDQ--------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp ECCSBTTBCCTTCEEEEEECTTSCEE---EEEEE--------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred CcccccccccCCCcEEEEEECCCCEE---EEeec--------------cccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 21 233455544321110 11111 23467899999999876654 3899999974
Q ss_pred -CCCcee-----eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 343 -MDSTPV-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 343 -~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
..+... ..+..... ....++++++|++.++...++.|.+||..+++ ....+..+...+
T Consensus 180 ~~~G~~~~~~~~~~~~~~~~---------------~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~-~~~~i~~p~~~~ 243 (297)
T 3g4e_A 180 LQTGQISNRRSVYKLEKEEQ---------------IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK-RLQTVKLPVDKT 243 (297)
T ss_dssp TTTCCEEEEEEEEECCGGGC---------------EEEEEEEBTTSCEEEEEETTTEEEEECTTTCC-EEEEEECSSSBE
T ss_pred CCCCcccCcEEEEECCCCCC---------------CCCeeEECCCCCEEEEEcCCCEEEEEcCCCce-EEEEEECCCCCc
Confidence 223321 11111111 11489999999888877778889999998774 455555555556
Q ss_pred ccceEe
Q 011368 417 RKPILQ 422 (487)
Q Consensus 417 ~~~~~~ 422 (487)
++++|.
T Consensus 244 t~~~f~ 249 (297)
T 3g4e_A 244 TSCCFG 249 (297)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 666665
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.38 E-value=3.6e-09 Score=98.36 Aligned_cols=252 Identities=11% Similarity=-0.024 Sum_probs=142.3
Q ss_pred EEcCCCCEEEEEec--CC---cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 39 ~~s~~~~~l~~g~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
...|+++++++... .. .|.+||..+++. +..+..-.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g~------------ 67 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF------------ 67 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE---------------------------EEEecCCC------------
Confidence 44578887777653 22 789999887753 23333222
Q ss_pred cceeEEEEEecCCCcEEEEEe----------CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
.+ .+++ +||+++++.+. .++.|.+||..+.+...........
T Consensus 68 ~p--~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~------------------------ 119 (373)
T 2mad_H 68 LP--NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------------------------ 119 (373)
T ss_pred CC--CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc------------------------
Confidence 22 7888 68999988875 3678999999876654432111000
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEE-eecCCCCCCCCCCcEEEE
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSNMDDLTEVITSA 259 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v 259 (487)
+ ..+......+.++|||++|+++ . ++.|.++| .+ ++.... +.. . .++
T Consensus 120 -------------~---~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~~~~~i~~-----~------~~~ 170 (373)
T 2mad_H 120 -------------R---FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSSDDQLLSS-----P------TCY 170 (373)
T ss_pred -------------c---cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCEEeEEcCC-----C------ceE
Confidence 0 0011234588999999999987 4 47899999 74 444433 211 1 135
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEEeCCeEEE
Q 011368 260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKL 338 (487)
Q Consensus 260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~d~~i~i 338 (487)
.+.|++...+++.+.||.+.++|. +++... .... .+ .+.+...-.....+.+++.. ++....+.+.+
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~----~~~~---~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~v 238 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG----AGLV---GA----MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQ 238 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcEEE----EEec---cc----cccCCcceeecceeEecCCEEEEEcCCceEEE
Confidence 566776567777888999999999 765331 1110 00 00000111223456666544 44444589999
Q ss_pred EeCCCCC-ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC----------CCcEEEEEeCCCC
Q 011368 339 WDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIFSHGVGS 403 (487)
Q Consensus 339 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~----------dg~i~iwd~~~~~ 403 (487)
.|+.... ..+..+......... ....... ...+.++||++.|+++.. ++.|.++|+.+++
T Consensus 239 id~~~~~~~v~~~~~~~~~~~~~--~~~~p~g---~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~ 309 (373)
T 2mad_H 239 ADISAAGATNKAPIDALSGGRKA--DTWRPGG---WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ 309 (373)
T ss_pred EeccCCcceEeeeeeecCCcccc--cceecCc---eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE
Confidence 9986422 122222211100000 0000000 124788999888877643 3579999988773
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=5.3e-10 Score=101.39 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=149.4
Q ss_pred ccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368 29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (487)
Q Consensus 29 ~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (487)
..........+|+|+|+ +++++..++.|..|+. +++ ...+..+.
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~----------------------------~~~~~~~~------ 85 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT----------------------------VDVLLDAT------ 85 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC----------------------------EEEEEESC------
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC----------------------------EEEEeCCC------
Confidence 33455677899999998 5666667889999986 332 12233333
Q ss_pred cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (487)
Q Consensus 108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (487)
..+..+++ +++|+++++...++.|.+|+.. ++...+...
T Consensus 86 ------~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~-------------------------------- 124 (305)
T 3dr2_A 86 ------AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR-------------------------------- 124 (305)
T ss_dssp ------SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECE--------------------------------
T ss_pred ------CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEec--------------------------------
Confidence 56889999 6788876666666889999976 543322100
Q ss_pred eeeeccceeeeecccCCCceeEEEeCCCCCEEEE----e-c-------------CCeEEEEEccCCCceeEEeecCCCCC
Q 011368 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCFNIVDMKPSNM 249 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s----~-~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~ 249 (487)
........++++++.|+|+++++ | . .+.|..+|..++ ....+
T Consensus 125 -----------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~~~~-------- 184 (305)
T 3dr2_A 125 -----------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRM-------- 184 (305)
T ss_dssp -----------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CCEEE--------
T ss_pred -----------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cEEEE--------
Confidence 00111244678999999998886 3 2 245666666533 22221
Q ss_pred CCCCCcEEEEEEecCCCCEEEEEeCC------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368 250 DDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 323 (487)
Q Consensus 250 ~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~ 323 (487)
. .......++|+|++ +.|+.+... +.|.+|++..+. +. ..+.+.. ........+++.+
T Consensus 185 ~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-~~~~~~~------------~~~~~pdgi~~d~ 248 (305)
T 3dr2_A 185 A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LH-DRRHFAS------------VPDGLPDGFCVDR 248 (305)
T ss_dssp E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EE-EEEEEEC------------CSSSCCCSEEECT
T ss_pred e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-cc-CCeEEEE------------CCCCCCCeEEECC
Confidence 1 22346789999999 877777665 789999987654 11 0112211 0123456789999
Q ss_pred CCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 324 DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 324 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
+|++.++. .+.|.+|+.. ++.+..+..+... ..++|+|+++.|..++.++
T Consensus 249 ~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp TSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEEETTE
T ss_pred CCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEEcCCe
Confidence 99965554 4569999984 6667666655432 4899999998888877764
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=1e-11 Score=114.51 Aligned_cols=189 Identities=10% Similarity=0.072 Sum_probs=127.7
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
..++.+++++...++++|+.+ .+++|+++.... .+..... + |......++
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~---------~~~~~~~-------~-------------~~~~~~~~l 87 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRD---------HITSDST-------P-------------LTFKWEKEI 87 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHH---------HHHSSSC-------C-------------CCCSEEEEC
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhh---------hhccccc-------c-------------ccceEEeeC
Confidence 369999999999999999987 466799764421 0000000 0 111111222
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
.. |+.|+| ++.+|+++ .++.|++||+.+......
T Consensus 88 p~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~---------------------------------------- 121 (388)
T 1xip_A 88 PD-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRT---------------------------------------- 121 (388)
T ss_dssp TT-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEE----------------------------------------
T ss_pred CC-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCc----------------------------------------
Confidence 26 999999 67888888 889999999987542221
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
...|...+.++.+.+.. ++++ .||.|.+||+.... ... +...|+|++|+|+| ++.
T Consensus 122 -------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~-~~~-----------~~~~Vs~v~WSpkG---~~v 177 (388)
T 1xip_A 122 -------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS-TKQ-----------LAQNVTSFDVTNSQ---LAV 177 (388)
T ss_dssp -------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC-EEE-----------EEESEEEEEECSSE---EEE
T ss_pred -------cceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc-ccc-----------ccCCceEEEEcCCc---eEE
Confidence 13455567787776543 7777 99999999998443 222 33579999999998 678
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCcccccc---ccccceeEEEEcCCCCEEEE
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT---EIIASISDIKFANDGQHLLS 330 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~s 330 (487)
|..||.+++|+...+.... .+.+.. + ..+. +|...|.++.|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~--k~~I~~------P-p~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEK--QFEFSL------P-SELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEE--EEEECC------C-HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccc--cceecC------C-cccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999999999888765210 022211 0 0011 25678999999999999986
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.35 E-value=1.1e-10 Score=118.52 Aligned_cols=245 Identities=13% Similarity=0.109 Sum_probs=148.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEe-----cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368 31 DVDIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (487)
|...+..++|||||++||.+. ....|++||+.+++.. ...+.+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~~~~~~------ 174 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------ETPLKD------ 174 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------EEEEEE------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------ccccCC------
Confidence 445788999999999998543 3357999999888631 001110
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeCCCc-------------EEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
.....++| + |++.|+.++.+.. |++|++.++.....
T Consensus 175 --------~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-------------------- 223 (693)
T 3iuj_A 175 --------VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR-------------------- 223 (693)
T ss_dssp --------EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE--------------------
T ss_pred --------ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce--------------------
Confidence 11356789 6 8888888877743 88888876542111
Q ss_pred cccccCCCCcceeeeeeeeccceeeee-ccc-CCCceeEEEeCCCCCEEEEe-c----CCeEEEEEccCCCceeEEeecC
Q 011368 173 FMNEHNPPSFAHGYHLEWTENMATKVY-PHA-HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMK 245 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~i~~s~~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~~~~ 245 (487)
..+ ... |...+..+.|+|||++|+.. . ++.|+++|+..+......+
T Consensus 224 ------------------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l--- 276 (693)
T 3iuj_A 224 ------------------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV--- 276 (693)
T ss_dssp ------------------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE---
T ss_pred ------------------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE---
Confidence 001 122 44557789999999988654 2 3589999998554333222
Q ss_pred CCCCCCCCCcEEEEEEecCCCCEEEEEeCC---CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 246 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 246 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
..+....... ++++|..+++....+ +.|..+|+.++... ..+.+..| ...+. .|+
T Consensus 277 ----~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~l~~~-------------~~~~~--~~s 334 (693)
T 3iuj_A 277 ----QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRDLIPE-------------RQQVL--TVH 334 (693)
T ss_dssp ----ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECC-------------CSSCE--EEE
T ss_pred ----eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEEEecC-------------CCCEE--EEE
Confidence 2333444444 666662444444433 57889998876421 11223331 23343 889
Q ss_pred CCCCEEEEEe--CC--eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC----CcE
Q 011368 323 NDGQHLLSRD--YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLL 394 (487)
Q Consensus 323 ~~~~~l~s~~--d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d----g~i 394 (487)
+++++|+... ++ .|++||+. +.....+...... .+..+.++++++.|+....+ +.+
T Consensus 335 ~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 335 SGSGYLFAEYMVDATARVEQFDYE--GKRVREVALPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp EETTEEEEEEEETTEEEEEEECTT--SCEEEEECCSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred EECCEEEEEEEECCeeEEEEEECC--CCeeEEeecCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 9999888653 33 78899886 3344444322211 11356778888776655444 789
Q ss_pred EEEEeCCCC
Q 011368 395 RIFSHGVGS 403 (487)
Q Consensus 395 ~iwd~~~~~ 403 (487)
+.||+.+++
T Consensus 399 ~~~d~~~g~ 407 (693)
T 3iuj_A 399 YRFEPKSGA 407 (693)
T ss_dssp EEECTTTCC
T ss_pred EEEECCCCe
Confidence 999998764
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=9e-10 Score=99.86 Aligned_cols=235 Identities=10% Similarity=-0.008 Sum_probs=144.0
Q ss_pred ccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeE
Q 011368 201 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 278 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 278 (487)
...........|+|+++ ++++. .++.|..|+.. +. . ..+ ..+...+..++++++| +++++...++.|
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~-~~~-------~~~~~~~~gl~~d~dG-~l~v~~~~~~~v 109 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V-DVL-------LDATAFTNGNAVDAQQ-RLVHCEHGRRAI 109 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E-EEE-------EESCSCEEEEEECTTS-CEEEEETTTTEE
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E-EEE-------eCCCCccceeeECCCC-CEEEEECCCCEE
Confidence 34455677899999998 55666 88999999885 33 2 221 2244568999999999 877666667889
Q ss_pred EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE----Ee--------------CCeEEEEe
Q 011368 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD--------------YMNLKLWD 340 (487)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s----~~--------------d~~i~iwd 340 (487)
.+|+.. ++. ..+..+... .....+..++++|+|++.++ |. .+.|+.+|
T Consensus 110 ~~~~~~-g~~-----~~~~~~~~~--------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 110 TRSDAD-GQA-----HLLVGRYAG--------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp EEECTT-SCE-----EEEECEETT--------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred EEECCC-CCE-----EEEEeccCC--------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 999976 432 222110000 00235678999999998886 32 14577777
Q ss_pred CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC------CcEEEEEeCCCCcee-EEE-ecc
Q 011368 341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGG-ITV-EAG 412 (487)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d------g~i~iwd~~~~~~~~-~~~-~~~ 412 (487)
..+ ++..... ....+ ..++|+||++.|+.+... +.|++|++..+.... ..+ ...
T Consensus 176 ~~~-g~~~~~~-~~~~p----------------~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~ 237 (305)
T 3dr2_A 176 PDG-SPLQRMA-DLDHP----------------NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP 237 (305)
T ss_dssp SSS-CCCEEEE-EESSE----------------EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS
T ss_pred CCC-CcEEEEe-cCCCC----------------cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC
Confidence 654 3332222 11111 489999999988777665 789999998653111 111 111
Q ss_pred CCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 413 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 413 ~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
......+.+.+ ++.+ .++ ..++..+|+..............+..++|+|+++.|.+++.+++|.+.
T Consensus 238 ~~~pdgi~~d~--~G~l-----wv~-~~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 238 DGLPDGFCVDR--GGWL-----WSS-SGTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp SSCCCSEEECT--TSCE-----EEC-CSSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCCCeEEECC--CCCE-----EEe-cCCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 22223444443 4443 333 344446664433333333333368899999999999998888888765
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.30 E-value=1.1e-08 Score=92.30 Aligned_cols=236 Identities=8% Similarity=-0.013 Sum_probs=154.2
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
..+.+++++++|+++++...++.|..||.. ++. + ...+....
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-------------------------~-~~~~~~~~----------- 103 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-------------------------T-EYPLPQPD----------- 103 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-------------------------E-EEECSSTT-----------
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-------------------------E-EecCCCCC-----------
Confidence 568999999999988777667889999865 321 0 01111122
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..+..+++ .+++.++++...++.|..++.. ++.....
T Consensus 104 -~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~--------------------------------------- 140 (300)
T 2qc5_A 104 -SGPYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYD--------------------------------------- 140 (300)
T ss_dssp -CCEEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEE---------------------------------------
T ss_pred -CCCccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEcc---------------------------------------
Confidence 55788998 5678877777778889999887 5443221
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
+......+.++++.++++++++. .++.|..++.. +. .... ........+.+++++++| .++++
T Consensus 141 -------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~------~~~~~~~~~~~i~~d~~g-~l~v~ 204 (300)
T 2qc5_A 141 -------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY------PLPTNAAAPVGITSGNDG-ALWFV 204 (300)
T ss_dssp -------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE------ECSSTTCCEEEEEECTTS-SEEEE
T ss_pred -------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe------eCCCCCCCcceEEECCCC-CEEEE
Confidence 12234567899999999977777 68899999984 33 2221 122334568999999998 77777
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
....+.|.+||. +++.. .+.. ......+.+++++++|++.++.. ++.|..||.. +... .
T Consensus 205 ~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~-~ 264 (300)
T 2qc5_A 205 EIMGNKIGRITT-TGEIS-----EYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQIGRITND--NTIQ-E 264 (300)
T ss_dssp ETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEE-E
T ss_pred ccCCCEEEEEcC-CCcEE-----EEEC-----------CCCCCCceEEEECCCCCEEEeccCCCeEEEECCC--CcEE-E
Confidence 767788999998 43321 1111 01134678999999998666664 4899999983 3322 2
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+...... ..+.+++++++|++.++.. . .|..++.+
T Consensus 265 ~~~~~~~-------------~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 265 YQLQTEN-------------AEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EECCSTT-------------CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EECCccC-------------CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 2211110 0114899999998666554 4 77777653
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=5.5e-09 Score=95.56 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=141.5
Q ss_pred EEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368 35 VSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (487)
Q Consensus 35 V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (487)
..+.+|+|++. ++++...++.|.+|+.++++. ..+. ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~------------ 89 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP------------ 89 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS------------
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEE-CC------------
Confidence 46789999754 556666788999999876532 1111 12
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+.+++|. ++|.++++. .+ .|.+||..+++...+....
T Consensus 90 ~~v~~i~~~--~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~------------------------------------- 128 (326)
T 2ghs_A 90 FMGSALAKI--SDSKQLIAS-DD-GLFLRDTATGVLTLHAELE------------------------------------- 128 (326)
T ss_dssp SCEEEEEEE--ETTEEEEEE-TT-EEEEEETTTCCEEEEECSS-------------------------------------
T ss_pred CcceEEEEe--CCCeEEEEE-CC-CEEEEECCCCcEEEEeeCC-------------------------------------
Confidence 568999995 577766654 44 4999998877654331100
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cC----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
.......+++++++|+|+++++. .+ ....||.+. .+....+. ........++|+|++ +.
T Consensus 129 ------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~--------~~~~~~~~i~~s~dg-~~ 192 (326)
T 2ghs_A 129 ------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF--------ADISIPNSICFSPDG-TT 192 (326)
T ss_dssp ------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE--------EEESSEEEEEECTTS-CE
T ss_pred ------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEee--------CCCcccCCeEEcCCC-CE
Confidence 00112458899999999987765 32 233444444 33332221 122346789999999 76
Q ss_pred EEEE-eCCCeEEEEEcc--CC-ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368 269 LAYS-SSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 269 l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~ 343 (487)
++.+ +.++.|.+||+. ++ .... .+.+.. +.........+++.++|.+.++.. .+.|.+||..
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~----------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~- 259 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGK--AEVFID----------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD- 259 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-
T ss_pred EEEEECCCCEEEEEEcccccCCcccC--ceEEEE----------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-
Confidence 6555 457899999986 44 3211 011211 001124567899999998777764 4899999983
Q ss_pred CCceeeeeecccccccccccccCCCCcceeeEEEEc-CCCCEEEEEcC
Q 011368 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 390 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~l~sg~~ 390 (487)
++.+..+..+... +++++|+ ++++.|++++.
T Consensus 260 -g~~~~~i~~~~~~---------------~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 260 -GNHIARYEVPGKQ---------------TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp -CCEEEEEECSCSB---------------EEEEEEESTTSCEEEEEEB
T ss_pred -CCEEEEEECCCCC---------------cEEEEEecCCCCEEEEEec
Confidence 5666666544322 2589998 88877755543
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=4.3e-09 Score=99.27 Aligned_cols=216 Identities=10% Similarity=0.056 Sum_probs=131.8
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.....|+| ++++.++++...++.|++||..++....+.
T Consensus 131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~---------------------------------------- 168 (409)
T 3hrp_A 131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVH---------------------------------------- 168 (409)
T ss_dssp CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------------
T ss_pred CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEee----------------------------------------
Confidence 46788999 578887777777899999999887655431
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCC--eEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l 269 (487)
.. ..... ++|+++++.|+++ .++ .|..++...... ...+. .+.. ....+.+++++|++ ..|
T Consensus 169 -------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~~~g----~~~~~~~~~p~~iav~p~~-g~l 233 (409)
T 3hrp_A 169 -------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PTRIG----QLGSTFSGKIGAVALDETE-EWL 233 (409)
T ss_dssp -------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EEEEE----ECCTTSCSCCCBCEECTTS-SEE
T ss_pred -------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-eEEee----eccchhcCCcEEEEEeCCC-CeE
Confidence 11 22233 8999999988887 544 788888874433 22210 0111 33556889999954 455
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccc--eeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQHLLSRD--YMNLKLWDIRMDS 345 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~--v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~ 345 (487)
+++..++.|..||..++.. ..+.. ... .++... ...++|+|++..|..++ .+.|+.|+...
T Consensus 234 yv~d~~~~I~~~d~~~~~~-----~~~~~-~~~-------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-- 298 (409)
T 3hrp_A 234 YFVDSNKNFGRFNVKTQEV-----TLIKQ-LEL-------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-- 298 (409)
T ss_dssp EEECTTCEEEEEETTTCCE-----EEEEE-CCC-------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC--
T ss_pred EEEECCCcEEEEECCCCCE-----EEEec-ccc-------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC--
Confidence 5577788999999987642 22211 000 000111 13899999655555543 38999999753
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 402 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~ 402 (487)
. +..+.++.....................++++|+|+++++-+ .++.|+.|++.++
T Consensus 299 ~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 299 E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 3 333333220000000000000011236899999999888887 8899999998766
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.29 E-value=4.4e-09 Score=96.20 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=119.7
Q ss_pred eeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 116 INRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 116 I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
....+|+ ++ +.++++...++.|..||..+++....
T Consensus 51 ~egp~~~--~~~~~l~~~d~~~~~i~~~d~~~~~~~~~------------------------------------------ 86 (326)
T 2ghs_A 51 GEGPTFD--PASGTAWWFNILERELHELHLASGRKTVH------------------------------------------ 86 (326)
T ss_dssp EEEEEEE--TTTTEEEEEEGGGTEEEEEETTTTEEEEE------------------------------------------
T ss_pred CcCCeEe--CCCCEEEEEECCCCEEEEEECCCCcEEEE------------------------------------------
Confidence 4678895 54 55666666788999999987754322
Q ss_pred eeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368 195 ATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 274 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 274 (487)
.....+.+++++++|++++++.+ .|.+||..++ ....+.... .......+..++++|+| .++++...
T Consensus 87 -------~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g-~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~ 153 (326)
T 2ghs_A 87 -------ALPFMGSALAKISDSKQLIASDD-GLFLRDTATG-VLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMG 153 (326)
T ss_dssp -------ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTC-CEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEE
T ss_pred -------ECCCcceEEEEeCCCeEEEEECC-CEEEEECCCC-cEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCC
Confidence 12346889999999988776644 4999998743 332222110 01112468899999999 76665432
Q ss_pred ------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCC--CC
Q 011368 275 ------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR--MD 344 (487)
Q Consensus 275 ------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~--~~ 344 (487)
.+.|..++ +++. ..+.. +......++|+|+|+.|+.++ ++.|.+||+. +
T Consensus 154 ~~~~~~~~~l~~~~--~g~~-----~~~~~-------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~- 212 (326)
T 2ghs_A 154 RKAETGAGSIYHVA--KGKV-----TKLFA-------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART- 212 (326)
T ss_dssp TTCCTTCEEEEEEE--TTEE-----EEEEE-------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT-
T ss_pred CcCCCCceEEEEEe--CCcE-----EEeeC-------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc-
Confidence 23455555 3332 11111 023467899999999776654 3899999985 3
Q ss_pred C-ce-----eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 345 S-TP-----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 345 ~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
+ .. +..+..... ....++++++|.+.++...++.|.+|+.
T Consensus 213 Gl~~~~~~~~~~~~~~~~---------------~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 213 GLPTGKAEVFIDSTGIKG---------------GMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp CCBSSCCEEEEECTTSSS---------------EEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred CCcccCceEEEECCCCCC---------------CCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 3 21 111111111 1147999999988777766788999987
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=2.8e-09 Score=97.83 Aligned_cols=262 Identities=11% Similarity=0.089 Sum_probs=147.9
Q ss_pred EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.++++|||++|++++ .++.|.+||..+.+.. ..+.-..+
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------------------~~I~v~~g---- 130 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDA---- 130 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTC----
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------------------EEEECCCc----
Confidence 499999999887765 3678999999877642 22210000
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (487)
+..........++| ++||++++.+.. ++.|.++|+.+++.......
T Consensus 131 -~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----------------------------- 178 (386)
T 3sjl_D 131 -PRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----------------------------- 178 (386)
T ss_dssp -CCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-----------------------------
T ss_pred -cccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-----------------------------
Confidence 00000023456888 689999888763 68999999999886654211
Q ss_pred eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE-EEEEEe
Q 011368 185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TSAEFH 262 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~v~~~ 262 (487)
.+ + ...+....+.+++. .||++.+.++...++..... .+ .+..-...+ ....|.
T Consensus 179 ----------------~g----~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~--~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 179 ----------------PD----C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TE--VFHPEDEFLINHPAYS 234 (386)
T ss_dssp ----------------CS----E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CC--CCSCTTSCBCSCCEEE
T ss_pred ----------------CC----c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cc--eeccccccccccceeE
Confidence 01 0 01111122333333 55666666655322221110 00 011111111 123665
Q ss_pred -cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---------
Q 011368 263 -PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--------- 332 (487)
Q Consensus 263 -p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--------- 332 (487)
++| + ++..+.+|.+.+.|+.+..... ...+..-....... .-.......++++++++.++...
T Consensus 235 ~~dG-~-~~~vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~~~~~---g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk 307 (386)
T 3sjl_D 235 QKAG-R-LVWPTYTGKIHQIDLSSGDAKF--LPAVEALTEAERAD---GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 307 (386)
T ss_dssp TTTT-E-EEEEBTTSEEEEEECTTSSCEE--CCCEESSCHHHHHT---TEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred cCCC-c-EEEEeCCCEEEEEECCCCccee--ecceeccccccccc---cccCCCcceeeECCCCCeEEEEeccccccccC
Confidence 566 4 4446678999999997654210 01111000000000 00012344577899998887642
Q ss_pred C--CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEE-cCCCcEEEEEeCCCCceeEE
Q 011368 333 Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIFSHGVGSAGGIT 408 (487)
Q Consensus 333 d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg-~~dg~i~iwd~~~~~~~~~~ 408 (487)
+ +.|.+.|+.+ .+.+..+...... +++++++|++ +|++. ..++.|.++|..+++. ..+
T Consensus 308 ~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~-~~~ 369 (386)
T 3sjl_D 308 TASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRS 369 (386)
T ss_dssp SCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSSSSCEEEEEETTTTEEEEEETTTCCE-EEE
T ss_pred CCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE-EEE
Confidence 1 5799999998 8888887755432 4899999997 66664 4589999999999853 444
Q ss_pred Ee
Q 011368 409 VE 410 (487)
Q Consensus 409 ~~ 410 (487)
++
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=2.9e-10 Score=104.85 Aligned_cols=190 Identities=7% Similarity=0.034 Sum_probs=124.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..++.+++ ++...++++|+.++ +.+|++...+.... ...+.
T Consensus 38 ~~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~----------------------------------- 79 (388)
T 1xip_A 38 ASLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPL----------------------------------- 79 (388)
T ss_dssp SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCC-----------------------------------
T ss_pred ccccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccc-----------------------------------
Confidence 46899999 46778899998875 66699875431000 00000
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
++.. ...+.. |+.++| |++.|+++.++.|++||+.+..+... ...+...+.++.+.+. .++++
T Consensus 80 -~~~~--~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~--------~~~~~~~v~~i~~~~p---~~av~ 142 (388)
T 1xip_A 80 -TFKW--EKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRT--------VTSFEKPVFQLKNVNN---TLVIL 142 (388)
T ss_dssp -CCSE--EEECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEE--------EEECSSCEEEEEECSS---EEEEE
T ss_pred -cceE--EeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCc--------cceeecceeeEEecCC---CEEEE
Confidence 0000 123556 999999 89999999889999999985543322 2345556777776643 38889
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCce--eee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP--VAT 350 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~--~~~ 350 (487)
+.||.|.+||+.++... . . ...|++++|||+| ..+...||.+++|+... ... ..+
T Consensus 143 ~~dG~L~v~dl~~~~~~----~---~--------------~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~-~~~~~k~~ 199 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTK----Q---L--------------AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRN-GEMEKQFE 199 (388)
T ss_dssp ETTSEEEEEETTTCCEE----E---E--------------EESEEEEEECSSE-EEEEETTSCEEEEEEET-TEEEEEEE
T ss_pred ECCCCEEEEEccCCccc----c---c--------------cCCceEEEEcCCc-eEEEEcCCcEEEEcCCC-ccccccce
Confidence 99999999999976532 1 1 3479999999999 44444579999998875 443 444
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 387 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 387 (487)
+....... + +.+.-..|.++.|.+++.++++
T Consensus 200 I~~Pp~~~----~--~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 200 FSLPSELE----E--LPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ECCCHHHH----T--SCTTTSEEEEEEESSSSEEEEE
T ss_pred ecCCcccc----c--ccCCCeeEEEEEEecCCeEEEE
Confidence 53211100 0 0001123479999999999886
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=1.1e-08 Score=94.22 Aligned_cols=263 Identities=8% Similarity=0.007 Sum_probs=150.1
Q ss_pred CcEEEEEEcCCCCEEEEEe--cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
..+..++++|+|+++++.. .++.++||.+++++.. ..|... ....+|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-------------------~~p~~~--~~~~~~~--------- 66 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-------------------PFPPQS--GNAIITF--------- 66 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-------------------ESCCCC--SSCCCCC---------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-------------------cCCCcc--cCcccce---------
Confidence 4789999999999988864 2344677777644220 000000 0111233
Q ss_pred ccccceeEEEEEecCCCcEEEEEeC-----CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (487)
..+..|++ .+++.++++-.. +..|.+||+.+++..........
T Consensus 67 ---~~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~--------------------------- 114 (343)
T 2qe8_A 67 ---DTVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP--------------------------- 114 (343)
T ss_dssp ---SCEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT---------------------------
T ss_pred ---eEeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh---------------------------
Confidence 67899999 577776665543 57899999998875443221100
Q ss_pred eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-----cCCeEEEEEccCCCceeEEeecCCCC--------CCC-
Q 011368 186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSN--------MDD- 251 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~- 251 (487)
...+...+..+++++++..++.+ .++.|.+||+.+ +...+++...+.. ..+
T Consensus 115 --------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~~~~~~~~~~~~~~~~g~ 179 (343)
T 2qe8_A 115 --------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQGYPGIAPEDIDLVIDGV 179 (343)
T ss_dssp --------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECTTCTTTSCCSCCCEETTE
T ss_pred --------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEecCCCcccccccceeECCE
Confidence 01233457899999865555444 367999999984 4444443210000 000
Q ss_pred -------------CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc---cceeecccccccCccccccccccc
Q 011368 252 -------------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIAS 315 (487)
Q Consensus 252 -------------~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~ 315 (487)
....+..++|+|++ +.|+++..++. ++|.+........ ....+.. ....++...
T Consensus 180 ~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~g~ 249 (343)
T 2qe8_A 180 PVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSK--------IERYSEKPI 249 (343)
T ss_dssp ECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTT--------CEEEEECCS
T ss_pred EEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcc--------eEecccCCC
Confidence 11246889999999 88888877653 4444432110000 0000000 000112345
Q ss_pred eeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368 316 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 394 (487)
Q Consensus 316 v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i 394 (487)
...++++++|.++++.. .+.|.+||... ++........... ...+++|+++++++++.+..+.+
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~--------------~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSAD-RAYKLLVTDEKLS--------------WTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTT-TEEEEEEECGGGS--------------CEEEEEECTTSCEEEEECCGGGS
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCC-CCEEEEEECCcee--------------cCCeeEECCCCcEEEEeCccccc
Confidence 67899999998887765 49999999843 4432222211110 12589999999888887765555
Q ss_pred EEE
Q 011368 395 RIF 397 (487)
Q Consensus 395 ~iw 397 (487)
.+|
T Consensus 315 ~~f 317 (343)
T 2qe8_A 315 APL 317 (343)
T ss_dssp GGG
T ss_pred ccc
Confidence 433
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.23 E-value=1.8e-08 Score=93.13 Aligned_cols=265 Identities=13% Similarity=0.122 Sum_probs=146.5
Q ss_pred EEc--CCCCEEEEE-ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368 39 EFD--KTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (487)
Q Consensus 39 ~~s--~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (487)
.++ +++++|+.. ..++.|.|+|+.+... ..+..+++..-+ ..+.... ..
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~-----------------------~p~~~k~ie~~~----~~~~~g~-s~ 139 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPR-----------------------EPKIIKVIEPEE----VKKVSGY-SR 139 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTT-----------------------SCEEEEEECHHH----HHHHHCE-EE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCC-----------------------Cceeeeeechhh----cccccCC-Cc
Confidence 346 788877664 4788999999865532 112233332000 0000000 13
Q ss_pred eeEEEEEecCCCcEEEEEeCC------CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
-..+.. .|+| +++++..+ +.|.+.|..+.+.+......
T Consensus 140 Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~--------------------------------- 183 (462)
T 2ece_A 140 LHTVHC--GPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID--------------------------------- 183 (462)
T ss_dssp EEEEEE--CSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB---------------------------------
T ss_pred ccceeE--CCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC---------------------------------
Confidence 344555 5788 66666554 78999999988766542111
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEec--------------------CCeEEEEEccCCCceeEEeecCCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNM 249 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~ 249 (487)
..-...-+.+.|+|+++.++++. +.+|.+||+.+ ++....++..
T Consensus 184 -----------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg---- 247 (462)
T 2ece_A 184 -----------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLG---- 247 (462)
T ss_dssp -----------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESC----
T ss_pred -----------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecC----
Confidence 01112234688899999988883 78999999995 4555544221
Q ss_pred CCCCCcEEEEEE--ecCCCCEEEEEe------CCCeEEEEEccCCccccccceeecccccccCcc------ccccccccc
Q 011368 250 DDLTEVITSAEF--HPIYCNLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGSK------SFFTEIIAS 315 (487)
Q Consensus 250 ~~~~~~v~~v~~--~p~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~------~~~~~~~~~ 315 (487)
........+.| +|++ +++++++ .+++|.+|....+... ..+.+.. ...+... ..+.+-...
T Consensus 248 -~~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi-~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 248 -EENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEI-PAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp -TTEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEE-CCEECCSSCCGGGGGGTEECCC
T ss_pred -CCCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeC-CCccccccccccccccccCCCc
Confidence 11223456656 9999 7666665 4668888777654321 1111111 0000000 001111245
Q ss_pred eeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368 316 ISDIKFANDGQHLLSRD--YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 389 (487)
Q Consensus 316 v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~ 389 (487)
...|.+||||++|.++. .+.|.+||+...+ +.+..+...... .......+.........++++|||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 78899999999999875 3999999986322 333333322100 0000000000000014799999999999888
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.22 E-value=1e-08 Score=95.92 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=56.3
Q ss_pred EEEEcCCCCEEEEEe-----------CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EE
Q 011368 318 DIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HF 385 (487)
Q Consensus 318 ~v~~s~~~~~l~s~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l 385 (487)
.++++|+++.+++.. .+.|.+.|+.+ .+.+..+.....+ ..+.|+|||+ ++
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~l 385 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPLL 385 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEE
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEEE
Confidence 478999988777642 25799999998 8888888765543 4899999999 88
Q ss_pred EEEc-CCCcEEEEEeCCCCc
Q 011368 386 ATGS-YSNLLRIFSHGVGSA 404 (487)
Q Consensus 386 ~sg~-~dg~i~iwd~~~~~~ 404 (487)
++.. .++.|.++|+.+++.
T Consensus 386 yv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 386 YALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEEETTTTEEEEEETTTCCE
T ss_pred EEEcCCCCeEEEEECCCCCE
Confidence 8887 589999999999854
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=1.7e-08 Score=93.12 Aligned_cols=225 Identities=7% Similarity=0.074 Sum_probs=133.2
Q ss_pred cceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
..+..|++ +++|+.+++.. .++.++||.+.+++........
T Consensus 17 ~~p~~va~--~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~----------------------------------- 59 (343)
T 2qe8_A 17 LAPGNITL--TPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQS----------------------------------- 59 (343)
T ss_dssp SCEEEEEE--CTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCC-----------------------------------
T ss_pred CCcceEEE--CCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcc-----------------------------------
Confidence 35788999 67888888864 2343677776644432110000
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-c-----CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
. ....+...+..++++++++++++- . +..|.+||+.+ ++....+.... ....+...+..++++|++
T Consensus 60 -----~-~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~-~~~~~~~~~~~v~vd~~~ 131 (343)
T 2qe8_A 60 -----G-NAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN-NQLSRVIYLPP-PITLSNSFVNDLAVDLIH 131 (343)
T ss_dssp -----S-SCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT-TEEEEEEECCT-TTSCTTCCCCEEEEETTT
T ss_pred -----c-CcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC-CeEEEEEECCh-hhcccccccceEEEecCC
Confidence 0 013456789999999999877765 4 68999999984 44444443321 112233456889999865
Q ss_pred CCEEEEEe---CCCeEEEEEccCCccccccceeeccccc-ccCc-cccccc--------------cccceeEEEEcCCCC
Q 011368 266 CNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAE-SHGS-KSFFTE--------------IIASISDIKFANDGQ 326 (487)
Q Consensus 266 ~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~~~-~~~~~~--------------~~~~v~~v~~s~~~~ 326 (487)
...+++.. .++.|.+||+.+++.. +.+..|.. .+.. .....+ ....+..|+|+|+|+
T Consensus 132 g~~yvtd~~~~~~~~i~v~d~~~g~~~----r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~ 207 (343)
T 2qe8_A 132 NFVYISDPAPDDKAALIRVDLQTGLAA----RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE 207 (343)
T ss_dssp TEEEEEECCSGGGCEEEEEETTTCCEE----EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC
T ss_pred CEEEEEcCccCCCCeEEEEECCCCCEE----EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC
Confidence 14445554 5789999999877643 33333211 0000 000000 012468899999999
Q ss_pred EEEEEeC--CeEEEEeCCC--CCc-----eeeeee--cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368 327 HLLSRDY--MNLKLWDIRM--DST-----PVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 395 (487)
Q Consensus 327 ~l~s~~d--~~i~iwd~~~--~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~ 395 (487)
.|+.++. ..+..++... ... ....+. ++... ...++++++|.++++...++.|.
T Consensus 208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G~l~va~~~~~~V~ 272 (343)
T 2qe8_A 208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDHNIYVGDLAHSAIG 272 (343)
T ss_dssp EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTCCEEEEEGGGTEEE
T ss_pred EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCCCEEEEccCCCeEE
Confidence 8887753 4555555321 010 000000 11110 03799999999999999999999
Q ss_pred EEEeCCC
Q 011368 396 IFSHGVG 402 (487)
Q Consensus 396 iwd~~~~ 402 (487)
+||.+++
T Consensus 273 ~~d~~~G 279 (343)
T 2qe8_A 273 VITSADR 279 (343)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9998555
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.11 E-value=8.7e-09 Score=104.51 Aligned_cols=237 Identities=11% Similarity=0.044 Sum_probs=142.4
Q ss_pred ccCCCceeEEEeCCCCCEEEEe------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368 201 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 274 (487)
Q Consensus 201 ~~~~~~v~~i~~s~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 274 (487)
.++...+..++|||||++|+.+ ....|++||+.++. .+.. .+... ....++|+ ++ +.|+.++.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~~------~~~~~--k~~~~~Ws-Dg-~~l~y~~~ 193 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-PLET------PLKDV--KFSGISWL-GN-EGFFYSSY 193 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-EEEE------EEEEE--ESCCCEEE-TT-TEEEEEES
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-CCcc------ccCCc--eeccEEEe-CC-CEEEEEEe
Confidence 3456678899999999999864 22579999999554 3221 01111 12467899 99 88888877
Q ss_pred CC-------------eEEEEEccCCccccccceeecccccccCccccccc-cccceeEEEEcCCCCEEEEE-e---C-Ce
Q 011368 275 RG-------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR-D---Y-MN 335 (487)
Q Consensus 275 dg-------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~s~-~---d-~~ 335 (487)
+. .|.+|++.++.... ..++.. .. |...+..+.|+|||++|+.. . . +.
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDD--RLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGC--EEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred cCcccccccccCCCcEEEEEECCCCcccc--eEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 63 48899987754211 122332 11 23457789999999988753 2 2 58
Q ss_pred EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CC---CcEEEEEeCCCCc-eeEEEe
Q 011368 336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YS---NLLRIFSHGVGSA-GGITVE 410 (487)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~d---g~i~iwd~~~~~~-~~~~~~ 410 (487)
|+++|+.........+..+.... ... ++++|..|+..+ .+ +.|..+++.++.. ....+.
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred EEEEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 99999976333445555444322 133 667666655443 33 6799999987643 134555
Q ss_pred ccCCccccceEeeCCccccccccceeee-cccce---ecCCCCCccccc--cccCCCeEEEEEcCCCCEEEEec-C----
Q 011368 411 AGKNENRKPILQAAPRARRSSLSNLTRG-LYRQA---HENSSSGHHELS--YNLSSKLLHLAWHPTTNLIACAN-G---- 479 (487)
Q Consensus 411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g-~~~~~---~~w~~~~~~~~~--~~~~~~v~~~~~spd~~~la~~s-~---- 479 (487)
.|...+. .+++. +.. |+.. ..++. .+|......... ......+..+.++|+++.|+... +
T Consensus 325 ~~~~~~~--~~s~~--g~~-----lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP 395 (693)
T 3iuj_A 325 PERQQVL--TVHSG--SGY-----LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP 395 (693)
T ss_dssp CCCSSCE--EEEEE--TTE-----EEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC
T ss_pred cCCCCEE--EEEEE--CCE-----EEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC
Confidence 6655554 67763 333 4443 34443 344432222222 23345677888999998776543 2
Q ss_pred CeEEEEe
Q 011368 480 NSLFFHY 486 (487)
Q Consensus 480 ~~~~i~~ 486 (487)
..+|.|+
T Consensus 396 ~~l~~~d 402 (693)
T 3iuj_A 396 PTLYRFE 402 (693)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 4577664
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.08 E-value=1.1e-08 Score=95.57 Aligned_cols=251 Identities=10% Similarity=0.095 Sum_probs=141.8
Q ss_pred EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC-Ccccc
Q 011368 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (487)
.++++|||++|+++. .++.|.++|..+.+.. ..+.-- .+.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv---------------------------~~I~v~g~~r-- 172 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPR-- 172 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCCC--
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE---------------------------EEEECCCccc--
Confidence 799999999888876 3678999998877542 222100 000
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCce-----eeeeccccccccccccC
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFV-----SSENTLLAEKNFMNEHN 178 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 178 (487)
.........++| ++||++++.+.. ++.|.+.|..+++............+ ..+....+++.++....
T Consensus 173 ----~~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 173 ----FLVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp ----CCBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred ----cccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence 000022355778 689999988864 57899999999887655433211000 00001112222222211
Q ss_pred CCCcceeeeeeeeccceeeeecccCCCc-eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCcee-EEeecCCCCCCC---C
Q 011368 179 PPSFAHGYHLEWTENMATKVYPHAHDFN-INSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDD---L 252 (487)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~---~ 252 (487)
....... .. . ..+ .....+ ...+.+.+++..++.. ..+.+.+.|.......+ ..+......... .
T Consensus 247 ~~~~v~~-~~-----~--~~~-~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 247 ADGETKV-TN-----T--EVF-HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp CTTCCEE-EE-----C--CCC-SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCcEEE-Ee-----e--eee-ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 1100000 00 0 111 111112 2245678888877776 77899999987332111 000000000000 0
Q ss_pred CCcEEEEEEecCCCCEEEEEeC----------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 253 TEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 253 ~~~v~~v~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
......++++|++ ..+++... ++.|.++|..+.+.. ..+.. ......+.|+
T Consensus 318 p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv----~~I~v--------------g~~P~gia~s 378 (426)
T 3c75_H 318 PGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI----NKIEL--------------GHEIDSINVS 378 (426)
T ss_dssp ECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEE--------------EEEECEEEEC
T ss_pred cCCceeeEEcCCC-CEEEEEecccccccccCCCCEEEEEECCCCeEE----EEEEC--------------CCCcCeEEEc
Confidence 1112236899998 66655532 357999999998765 44444 2357899999
Q ss_pred CCCC-EEEEEe--CCeEEEEeCCCCCceeeee
Q 011368 323 NDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 323 ~~~~-~l~s~~--d~~i~iwd~~~~~~~~~~~ 351 (487)
|||+ ++++.. ++.|.++|+.+ .+.+..+
T Consensus 379 pDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI 409 (426)
T 3c75_H 379 QDAEPLLYALSAGTQTLHIYDAAT-GEELRSV 409 (426)
T ss_dssp CSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred cCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence 9999 787765 59999999997 7878776
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=1.8e-08 Score=92.57 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=56.8
Q ss_pred EEEcCCCCEEEEE-e-C--------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE-EEE
Q 011368 319 IKFANDGQHLLSR-D-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FAT 387 (487)
Q Consensus 319 v~~s~~~~~l~s~-~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~s 387 (487)
++++|+++.++.+ . . +.+.++|+.+ .+.+..+.....+ ..++|+|||++ +++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNYA 331 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEEE
Confidence 6899999887754 2 2 3566999998 7778877766543 48999999984 555
Q ss_pred Ec-CCCcEEEEEeCCCCceeEEEeccC
Q 011368 388 GS-YSNLLRIFSHGVGSAGGITVEAGK 413 (487)
Q Consensus 388 g~-~dg~i~iwd~~~~~~~~~~~~~~~ 413 (487)
.. .++.|.++|+.+++ ....+....
T Consensus 332 ~~~~~~~VsVID~~t~k-vv~~I~vg~ 357 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQ-DQSSVELDK 357 (368)
T ss_dssp EETTTTEEEEEESSSCE-EEEECCCCS
T ss_pred ccCCCCeEEEEECCCCc-EEEEEECCC
Confidence 55 58999999999984 345554443
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.01 E-value=2.5e-06 Score=75.33 Aligned_cols=217 Identities=11% Similarity=-0.007 Sum_probs=128.1
Q ss_pred cceeEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 114 EKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 114 ~~I~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
..+..++|. +++ .++++-..++.|..++..++....+
T Consensus 36 ~~~~gi~~d--~~~~~ly~~d~~~~~I~~~~~~g~~~~~~---------------------------------------- 73 (267)
T 1npe_A 36 KVIIGLAFD--CVDKVVYWTDISEPSIGRASLHGGEPTTI---------------------------------------- 73 (267)
T ss_dssp EEEEEEEEE--TTTTEEEEEETTTTEEEEEESSSCCCEEE----------------------------------------
T ss_pred CcEEEEEEe--cCCCEEEEEECCCCEEEEEecCCCCcEEE----------------------------------------
Confidence 446889995 544 4445555678999999876543222
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
..........+++++++..|+.+ ..+.|.+++.+. .....+. .........++++|++ ..|+
T Consensus 74 -------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~-------~~~~~~P~~i~vd~~~-g~ly 137 (267)
T 1npe_A 74 -------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQRRVLF-------DTGLVNPRGIVTDPVR-GNLY 137 (267)
T ss_dssp -------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE-------CSSCSSEEEEEEETTT-TEEE
T ss_pred -------EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC-CCEEEEE-------ECCCCCccEEEEeeCC-CEEE
Confidence 11222457889999876665554 678999999873 2222221 1112356899999965 4555
Q ss_pred EEeC---CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368 271 YSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS 345 (487)
Q Consensus 271 ~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~ 345 (487)
.+.. .+.|..+++..... +.+.. ........+++++++..|..++ .+.|.++|+.. .
T Consensus 138 v~~~~~~~~~I~~~~~dg~~~-----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~ 199 (267)
T 1npe_A 138 WTDWNRDNPKIETSHMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-P 199 (267)
T ss_dssp EEECCSSSCEEEEEETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-E
T ss_pred EEECCCCCcEEEEEecCCCCc-----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-C
Confidence 4443 36888888764321 22211 0023578899999888777664 38999999863 3
Q ss_pred ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC-CccccceEeeC
Q 011368 346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAA 424 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~ 424 (487)
.....+.....+ ..++.. ++..+++....+.|.++|..+++. ...+.... .....+++.|.
T Consensus 200 ~~~~~~~~~~~P----------------~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~-~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 200 GRRKVLEGLQYP----------------FAVTSY-GKNLYYTDWKTNSVIAMDLAISKE-MDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEEECCCSE----------------EEEEEE-TTEEEEEETTTTEEEEEETTTTEE-EEEECCSSCCCCCCEEEECS
T ss_pred ceEEEecCCCCc----------------eEEEEe-CCEEEEEECCCCeEEEEeCCCCCc-eEEEccccccccceeeecCc
Confidence 222222221111 366654 344444444668999999988743 44554332 23455666653
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.97 E-value=2.1e-07 Score=86.93 Aligned_cols=194 Identities=10% Similarity=0.032 Sum_probs=105.8
Q ss_pred CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC
Q 011368 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF 205 (487)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (487)
++..++.++.++.|..+|..+++......... .....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-------------------------------------------~~~~~ 138 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-------------------------------------------EALSR 138 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSS-------------------------------------------CCCSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-------------------------------------------ceEcC
Confidence 35678888899999999999888654321110 00011
Q ss_pred ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC--CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368 206 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 282 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 282 (487)
++ .. +..++.+ .++.|..+|..++......- ..... ...... .... + ..+++++.++.+..+|
T Consensus 139 p~----~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~----~~~~-~--~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 139 PV----VS--DGLVLIHTSNGQLQALNEADGAVKWTVN-LDMPSLSLRGESA----PTTA-F--GAAVVGGDNGRVSAVL 204 (376)
T ss_dssp CE----EE--TTEEEEECTTSEEEEEETTTCCEEEEEE-CCC-----CCCCC----CEEE-T--TEEEECCTTTEEEEEE
T ss_pred CE----EE--CCEEEEEcCCCeEEEEECCCCcEEEEEe-CCCCceeecCCCC----cEEE-C--CEEEEEcCCCEEEEEE
Confidence 11 11 3466666 89999999998665544331 11000 000111 1222 3 4677888899999999
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL 361 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 361 (487)
..+++.. ..... ..+.....+............ .+..++.++ ++.+..+|.++ ++.+........
T Consensus 205 ~~tG~~~----w~~~~--~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~~~~~----- 270 (376)
T 3q7m_A 205 MEQGQMI----WQQRI--SQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRS-GQIMWKRELGSV----- 270 (376)
T ss_dssp TTTCCEE----EEEEC--CC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTT-CCEEEEECCCCE-----
T ss_pred CCCCcEE----EEEec--ccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCC-CcEEeeccCCCC-----
Confidence 9988743 12211 000000000000000001111 134555554 59999999987 666655442211
Q ss_pred ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
..+.. ++..|+.++.++.|..+|..+++.
T Consensus 271 ------------~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 271 ------------NDFIV--DGNRIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp ------------EEEEE--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred ------------CCceE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 13333 356788888899999999999854
No 227
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=1.6e-05 Score=82.09 Aligned_cols=334 Identities=10% Similarity=0.057 Sum_probs=184.0
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (487)
Q Consensus 35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (487)
|.++...++|++.+ |..++.|..|+..+++.. ... ...+. .
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-------------------------~~~-~~~~~------------~ 215 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE-------------------------KVI-PILGT------------K 215 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE-------------------------ECC-----C------------C
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE-------------------------Eec-CCCCC------------C
Confidence 88888888887555 555545888886554321 000 00112 5
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
.|.++... .++. |..++.++-+.+||..+++..........+
T Consensus 216 ~i~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~----------------------------------- 257 (795)
T 4a2l_A 216 QIQAILQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNP----------------------------------- 257 (795)
T ss_dssp CEEEEEEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCT-----------------------------------
T ss_pred eeEEEEEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCc-----------------------------------
Confidence 57888773 4555 445554445888998776654331100000
Q ss_pred eeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCC-CCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368 195 ATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSS 273 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~ 273 (487)
..-....|.++...++|.+.+...+ -|.+||..+ .. +..+...+ ....-....|.++..+++| . |-.|+
T Consensus 258 -----~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt 327 (795)
T 4a2l_A 258 -----KSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT-DS-FASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGT 327 (795)
T ss_dssp -----TSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT-TE-EEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEE
T ss_pred -----cccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC-Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEE
Confidence 0112456999999988887766654 588898773 32 22221110 0111134579999999987 4 55677
Q ss_pred CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeec
Q 011368 274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI 353 (487)
Q Consensus 274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~ 353 (487)
.++.|..|+..++.. ..+.. ...+ . .-....|.++...++|.+.+...++-|..|+..+ +. ...+..
T Consensus 328 ~~~Gl~~~~~~~~~~-----~~~~~-~~~~---~--~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~-~~~~~~ 394 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRF-----KNIRN-IPYK---N--SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QR-FTSYTL 394 (795)
T ss_dssp SSSCEEEECGGGGSS-----EEECC-CTTS---S--SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CC-EEEECC
T ss_pred CCCCeEEeCCCcccc-----eEEcC-CCCC---C--CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-Cc-EEEEec
Confidence 777789998766432 11211 0000 0 0013569999999998866655557899999865 33 222221
Q ss_pred cc-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec-----cCCccccceEeeCCcc
Q 011368 354 HE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRA 427 (487)
Q Consensus 354 ~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~ 427 (487)
.. ..... . ....|.+++..++|+.|..|+.++-|.+||..+++. ..+.. +...|.++... +++
T Consensus 395 ~~~~~~~~----l---~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d--~~g 463 (795)
T 4a2l_A 395 QEDESARG----I---GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPD--GEG 463 (795)
T ss_dssp C------C----C---SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEEC--SSS
T ss_pred CCCCcccC----C---CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEEC--CCC
Confidence 11 00000 0 011235888888888466677777899999887643 22221 12233333332 244
Q ss_pred ccccccceeeecccceecCCCCCcccccc-------c-cCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 428 RRSSLSNLTRGLYRQAHENSSSGHHELSY-------N-LSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 428 ~~~~~~~l~~g~~~~~~~w~~~~~~~~~~-------~-~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
.+ -.|...+...++......... . ....|.++...++|.+.+... ++++.|.
T Consensus 464 ~l------wigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 464 NL------WLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK 523 (795)
T ss_dssp CE------EEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred CE------EEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence 43 333334444442221111111 1 235789999999998877665 7888875
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.92 E-value=3.4e-07 Score=92.06 Aligned_cols=192 Identities=10% Similarity=0.105 Sum_probs=112.1
Q ss_pred eeEEEeCCCCCEEEEe-cCC-------------------eEEEEEccCCCceeEEeecCCCC---CCCCCCcEEEEEEec
Q 011368 207 INSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHP 263 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p 263 (487)
...++++|++..++.+ .++ .|..+|.++++.....- ..+.. +.. .....-+....
T Consensus 245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~-~~~~d~wd~~~-~~~p~l~~~~~ 322 (677)
T 1kb0_A 245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ-ETPGDNWDYTS-TQPMILADIKI 322 (677)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE-SSTTCCSCCCC-CSCCEEEEEEE
T ss_pred ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe-cCCCccccccc-CCCcEEEeccc
Confidence 3467788888888877 553 58999999666554431 11110 001 11222233334
Q ss_pred CCC--CEEEEEeCCCeEEEEEccCCccccccceeecccccc-------cCcc-------------cccc---ccccceeE
Q 011368 264 IYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-------HGSK-------------SFFT---EIIASISD 318 (487)
Q Consensus 264 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-------~~~~-------------~~~~---~~~~~v~~ 318 (487)
+|. ..++.++.+|.+.++|.++++.+. .+...... .... ..++ +.. .-..
T Consensus 323 dG~~~~~l~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~-~w~~ 397 (677)
T 1kb0_A 323 AGKPRKVILHAPKNGFFFVLDRTNGKFIS----AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH-NWHP 397 (677)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS-CSSC
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCCEec----cccccccCcccccCCCCceeeccccCcCCCccEECcCccccc-CCCC
Confidence 552 468888999999999999998642 11110000 0000 0000 000 1136
Q ss_pred EEEcCCCCEEEEEe--------------------------------------------CCeEEEEeCCCCCceeeeeecc
Q 011368 319 IKFANDGQHLLSRD--------------------------------------------YMNLKLWDIRMDSTPVATFKIH 354 (487)
Q Consensus 319 v~~s~~~~~l~s~~--------------------------------------------d~~i~iwd~~~~~~~~~~~~~~ 354 (487)
++++|++.++++.. .+.|..||+.+ ++.+..+...
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~ 476 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHV 476 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEES
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCC
Confidence 78899888777631 16799999987 7777666543
Q ss_pred cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC-CccccceEee
Q 011368 355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQA 423 (487)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~ 423 (487)
... +...++.++..+++++.||.+++||.++++. +..+.... .....+.+..
T Consensus 477 ~~~----------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~~y~~ 529 (677)
T 1kb0_A 477 SPW----------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTGVVAAPSTYMV 529 (677)
T ss_dssp SSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEE
T ss_pred CCC----------------cCcceEeCCCEEEEECCCCcEEEEECCCCce-eeeeeCCCCcccCCEEEEe
Confidence 221 2445666788889999999999999999955 45554333 2333444433
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.89 E-value=7.6e-07 Score=82.41 Aligned_cols=172 Identities=10% Similarity=0.019 Sum_probs=101.1
Q ss_pred ceeEEEeCCCCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-----
Q 011368 206 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----- 273 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~----- 273 (487)
.-..+..+|+| +++++ .+ +.|.++|.++ .+.+..+... ......-+.+.|+|++ +.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T-~~v~~~~~~~----~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~ 211 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS-FEPLGKWEID----RGDQYLAYDFWWNLPN-EVLVSSEWAVPN 211 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT-CCEEEECCSB----CTTCCCCCCEEEETTT-TEEEECBCCCHH
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC-CeEEEEEccC----CCCccccceEEECCCC-CEEEEccCcCcc
Confidence 34567788999 77776 55 7899999984 4444443111 0111223467889999 8888874
Q ss_pred --------------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE--cCCCCEEEEE-e----
Q 011368 274 --------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSR-D---- 332 (487)
Q Consensus 274 --------------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~--s~~~~~l~s~-~---- 332 (487)
.+.+|.+||+.+++.. ..+.. . ........+.| +|+++++..+ .
T Consensus 212 ~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~----~tI~v-g----------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~ 276 (462)
T 2ece_A 212 TIEDGLKLEHLKDRYGNRIHFWDLRKRKRI----HSLTL-G----------EENRMALELRPLHDPTKLMGFINMVVSLK 276 (462)
T ss_dssp HHTTCCCTTTHHHHSCCEEEEEETTTTEEE----EEEES-C----------TTEEEEEEEEECSSTTCCEEEEEEEEETT
T ss_pred ccccccchhhhhhccCCEEEEEECCCCcEe----eEEec-C----------CCCCccceeEeeECCCCCEEEEEEeeecc
Confidence 3689999999987543 33333 0 00123445555 9999987764 4
Q ss_pred -C-CeEEEEeCCCCCce--eeeeeccccccc-cccccc----CCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCC
Q 011368 333 -Y-MNLKLWDIRMDSTP--VATFKIHEHLRP-KLCDLY----NNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 402 (487)
Q Consensus 333 -d-~~i~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~ 402 (487)
. ++|.+|.... +.. ...+......+. .+..+. .... ....+.+||||++|.++.. .+.|.+||+...
T Consensus 277 ~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~--~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 277 DLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP--LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp TCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECC--CCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred CCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCC--ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 4 7888877653 321 111111110000 000000 0000 1248999999999987775 589999999643
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=1.4e-09 Score=101.18 Aligned_cols=189 Identities=10% Similarity=0.009 Sum_probs=96.4
Q ss_pred CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEE
Q 011368 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (487)
Q Consensus 43 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~ 122 (487)
++..+++++.||.|+.||..+++.. -.+.. . .+.+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------W~~~~-~-------------~~~s~p~- 45 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------WTLKE-D-------------PVLQVPT- 45 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---------------------------EEEEC-C-------------CSCCCC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEecC-C-------------Cceecce-
Confidence 5678999999999999999888652 12221 1 1222223
Q ss_pred ecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeeccc
Q 011368 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHA 202 (487)
Q Consensus 123 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (487)
..++..+++++.|+.|+.||..+++........... ..
T Consensus 46 -~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-----------------------------------------~~ 83 (369)
T 2hz6_A 46 -HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-----------------------------------------LV 83 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CCSEECSCCHHH-----------------------------------------HH
T ss_pred -EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-----------------------------------------cc
Confidence 245667778889999999999888654321100000 00
Q ss_pred CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 203 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
...++ +. ++..++++ .++.|+.||.++++..... ..+. ...++|++ ..+++++.++.|..|
T Consensus 84 ~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~--------~~~~----~~~~~p~~-~~v~~~~~dg~v~a~ 145 (369)
T 2hz6_A 84 QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTL--------SSAF----ADSLSPST-SLLYLGRTEYTITMY 145 (369)
T ss_dssp TTCSC----C------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECC
T ss_pred ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEe--------cCCC----cccccccC-CEEEEEecCCEEEEE
Confidence 01111 11 24456666 8999999999966544321 2221 23456677 889999999999999
Q ss_pred EccCCccccccceeecccccccCccccccccccceeEEEEcCC----CCEEEEEeCCeEEEEeCCCCCceeeeeec
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKLWDIRMDSTPVATFKI 353 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~----~~~l~s~~d~~i~iwd~~~~~~~~~~~~~ 353 (487)
|.++++.+ ..+..+ ......+.++ +..++++.++.|+.||.++ ++.+.....
T Consensus 146 d~~tG~~~----W~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~ 201 (369)
T 2hz6_A 146 DTKTRELR----WNATYF---------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES-GDVLWIQNY 201 (369)
T ss_dssp CSSSSSCC----CEEEEE---------------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT-CCEEEEEEC
T ss_pred ECCCCCEE----EeEecc---------------cccCccccCCccccceEEEECCCCEEEEEECCC-CcEEEEecC
Confidence 99998744 222220 1122223332 4444444569999999987 777766653
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.87 E-value=9e-07 Score=89.21 Aligned_cols=200 Identities=12% Similarity=0.087 Sum_probs=114.8
Q ss_pred eEEEeCCCCCEEEEe-cCC-------------------eEEEEEccCCCceeEEeecCCCCCCC--CCCcEEEEEEecCC
Q 011368 208 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIY 265 (487)
Q Consensus 208 ~~i~~s~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~ 265 (487)
..++++|++.+++.+ .++ .|..+|.++++.....- ..+...-. ....+.-.....+|
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~-~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ-TTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee-cCCcccccccCCCCcEEEeeccCC
Confidence 467788888888888 665 39999999766555431 11111000 11222222333355
Q ss_pred CC---EEEEEeCCCeEEEEEccCCccccccce---eeccccc----cc-----------Cc--cccccccc--cceeEEE
Q 011368 266 CN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----SH-----------GS--KSFFTEII--ASISDIK 320 (487)
Q Consensus 266 ~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~h~~----~~-----------~~--~~~~~~~~--~~v~~v~ 320 (487)
+ .++.++.+|.+.++|.++++.+..... .+..+.. .+ .. ...+++.. ..-..++
T Consensus 317 -~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a 395 (689)
T 1yiq_A 317 -KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS 395 (689)
T ss_dssp -EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred -cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence 4 788999999999999999986421000 0000000 00 00 00000000 0122378
Q ss_pred EcCCCCEEEEEe----------------------------------------------CCeEEEEeCCCCCceeeeeecc
Q 011368 321 FANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIH 354 (487)
Q Consensus 321 ~s~~~~~l~s~~----------------------------------------------d~~i~iwd~~~~~~~~~~~~~~ 354 (487)
++|+..++++.. +|.|+.||+.+ ++.+..+..+
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~ 474 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYV 474 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEES
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCC
Confidence 888877776541 26688999987 7777776654
Q ss_pred cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc-cccceEeeCCcccc
Q 011368 355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE-NRKPILQAAPRARR 429 (487)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~ 429 (487)
... ....++..+.++++|+.||.++.||.++|+. +..++..... ...+.+.. +++.
T Consensus 475 ~~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~ty~~--~G~q 531 (689)
T 1yiq_A 475 TIF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAASGVMAAPVTYSV--DGEQ 531 (689)
T ss_dssp SSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEE--TTEE
T ss_pred CCc----------------cCccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCCCCcccCceEEEE--CCEE
Confidence 322 1335556778999999999999999999955 5555544332 34455544 4543
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.85 E-value=8.2e-10 Score=102.83 Aligned_cols=186 Identities=10% Similarity=0.057 Sum_probs=99.2
Q ss_pred CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC
Q 011368 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF 205 (487)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (487)
++..+++++.|+.|+.||..+|+...... . +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-----------------------------------------------~--~ 38 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-----------------------------------------------E--D 38 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE-----------------------------------------------C--C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec-----------------------------------------------C--C
Confidence 57789999999999999999998765421 1 2
Q ss_pred ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC-CcEE-EEEEecCCCCEEEEEeCCCeEEEEE
Q 011368 206 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVIT-SAEFHPIYCNLLAYSSSRGFVRLVD 282 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~-~v~~~p~~~~~l~~~~~dg~i~iwd 282 (487)
.+.+..+..++..++++ .|+.|+.||.++++..... ..+. ..+. +..+. .+ ..+++++.++.|..||
T Consensus 39 ~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~--------~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D 108 (369)
T 2hz6_A 39 PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL--------PFTIPELVQASPCRS-SD-GILYMGKKQDIWYVID 108 (369)
T ss_dssp CSCCCC-----CCEEECTTTCCEEEC-----CCSEEC--------SCCHHHHHTTCSCC-------CCCCEEEEEEEEEC
T ss_pred CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee--------eccCccccccCceEe-cC-CEEEEEeCCCEEEEEE
Confidence 23333344567788887 9999999999855543321 1110 0000 00111 23 5677888899999999
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL 361 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 361 (487)
.++++.. ..+..+ . ...++|++..+++++ ++.|+.||.++ ++.+..+......
T Consensus 109 ~~tG~~~----w~~~~~--------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~---- 162 (369)
T 2hz6_A 109 LLTGEKQ----QTLSSA--------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA---- 162 (369)
T ss_dssp CC-------------------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC----
T ss_pred CCCCcEE----EEecCC--------------C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc----
Confidence 9998754 233321 1 134456777777765 59999999987 6666555432211
Q ss_pred ccccCCCCcceeeEEEEcCCC---CEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368 362 CDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVE 410 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~s~d~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 410 (487)
..+++++. ..+++++.||.|+.||..+++. .....
T Consensus 163 -------------~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~ 200 (369)
T 2hz6_A 163 -------------ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV-LWIQN 200 (369)
T ss_dssp -------------CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE-EEEEE
T ss_pred -------------CccccCCccccceEEEECCCCEEEEEECCCCcE-EEEec
Confidence 23333332 4577788999999999998854 33333
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.84 E-value=9.1e-08 Score=87.98 Aligned_cols=250 Identities=9% Similarity=-0.003 Sum_probs=135.5
Q ss_pred EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC-Ccccc
Q 011368 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (487)
Q Consensus 37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (487)
.++|+||+++++++. .++.|.+||..+++. ..++... .+.|
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---------------------------v~~I~v~~~~~~- 120 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---------------------------IADIELPDAPRF- 120 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------------------------EEEEEETTSCSC-
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---------------------------EEEEECCCcccc-
Confidence 799999999988886 368899999988764 2333211 0000
Q ss_pred cccccccccceeEEEEEecCCCcEEEEEeC--CCcEEE--EEccccceeEeeecCCCCceeeeeccccccc-cccccCCC
Q 011368 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKL--WKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPP 180 (487)
Q Consensus 106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 180 (487)
..-.....+++ +|||++++.+.. +..+.+ +|..+ ...+ .... ++.. .+++. .+.....
T Consensus 121 -----~~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~~-----~~~~-~p~g~~~~~~~~~- 183 (368)
T 1mda_H 121 -----SVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSAS-----CFHI-HPGAAATHYLGSC- 183 (368)
T ss_dssp -----CBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECSS-----CCCC-EEEETTEEECCCC-
T ss_pred -----ccCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECCC-----ceEE-ccCCCeEEEEEcC-
Confidence 00012456888 689999988864 467888 88877 2222 1110 0111 12221 1111111
Q ss_pred Ccceeeeeeeec-----cceee---eecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCce-eEEeecCCCCCC
Q 011368 181 SFAHGYHLEWTE-----NMATK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMD 250 (487)
Q Consensus 181 ~~~~~~~~~~~~-----~~~~~---~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~ 250 (487)
+..... ...+. .+... ..+.-...+. . .+++..++.. . +.+.+.|+...... ...+........
T Consensus 184 dg~~~~-vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~ 257 (368)
T 1mda_H 184 PASLAA-SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK 257 (368)
T ss_dssp TTSCEE-EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred CCCEEE-EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc
Confidence 111111 11111 00000 0011112232 3 4555555555 7 89999998743221 111100000000
Q ss_pred CC---CCcEEEEEEecCCCCEEEEEeC---------CCeEEEEEccCCccccccceeecccccccCccccccccccceeE
Q 011368 251 DL---TEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 318 (487)
Q Consensus 251 ~~---~~~v~~v~~~p~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 318 (487)
.+ ......++++|++ +.++++.. ++.+.++|+.+.+.. ..+.. ......
T Consensus 258 ~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v--------------g~~p~g 318 (368)
T 1mda_H 258 ADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN--------------GHDSDA 318 (368)
T ss_dssp HTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------EEEECE
T ss_pred ccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC--------------CCCcce
Confidence 01 1111226899999 66665532 235679999998755 44443 235889
Q ss_pred EEEcCCCCE-EEEEe--CCeEEEEeCCCCCceeeeeeccccc
Q 011368 319 IKFANDGQH-LLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 357 (487)
Q Consensus 319 v~~s~~~~~-l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~ 357 (487)
++|+|||+. +++.. ++.|.++|+.+ .+.+..+.....+
T Consensus 319 i~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 319 IIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred EEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 999999984 45554 59999999998 8888888866654
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=2.8e-05 Score=68.47 Aligned_cols=218 Identities=12% Similarity=0.126 Sum_probs=129.8
Q ss_pred cEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
.+..++|++++..|+.+. .++.|.+++.++... ...+....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------------------------~~~~~~~~----------- 78 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------------------TTIIRQDL----------- 78 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------------------EEEECTTC-----------
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------------------EEEEECCC-----------
Confidence 467999999776666554 567899999865532 11111111
Q ss_pred ccceeEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 113 EEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.....+++. +++ .++++-...+.|.+++.+......+
T Consensus 79 -~~p~~ia~d--~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--------------------------------------- 116 (267)
T 1npe_A 79 -GSPEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVL--------------------------------------- 116 (267)
T ss_dssp -CCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEE---------------------------------------
T ss_pred -CCccEEEEE--ecCCeEEEEECCCCEEEEEEcCCCCEEEE---------------------------------------
Confidence 356889984 544 4445555678899988865432211
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe--c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
..........++++|++..|+.+ . .+.|..++++. .....+. .........++++|++ .
T Consensus 117 --------~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~-------~~~~~~P~gia~d~~~-~ 179 (267)
T 1npe_A 117 --------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILA-------QDNLGLPNGLTFDAFS-S 179 (267)
T ss_dssp --------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEE-------CTTCSCEEEEEEETTT-T
T ss_pred --------EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEE-------ECCCCCCcEEEEcCCC-C
Confidence 01112346789999966655554 3 46888888873 2221111 1122357899999987 5
Q ss_pred EEE-EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368 268 LLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD 344 (487)
Q Consensus 268 ~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~ 344 (487)
.|+ +-...+.|..+|+...... ..... ......++.. +..|..++ .+.|.++|..+
T Consensus 180 ~lyv~d~~~~~I~~~~~~g~~~~----~~~~~--------------~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~- 238 (267)
T 1npe_A 180 QLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI- 238 (267)
T ss_dssp EEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT-
T ss_pred EEEEEECCCCEEEEEecCCCceE----EEecC--------------CCCceEEEEe--CCEEEEEECCCCeEEEEeCCC-
Confidence 554 4455689999998754321 11111 1223456554 45555553 38999999986
Q ss_pred CceeeeeecccccccccccccCCCCcceeeEEEEcCCCC
Q 011368 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 383 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 383 (487)
++.+..+.......+ ..+++.|++.
T Consensus 239 g~~~~~i~~g~~~~p--------------~gi~~~~~~~ 263 (267)
T 1npe_A 239 SKEMDTFHPHKQTRL--------------YGITIALSQC 263 (267)
T ss_dssp TEEEEEECCSSCCCC--------------CCEEEECSCC
T ss_pred CCceEEEcccccccc--------------ceeeecCccC
Confidence 777777754332111 3788888764
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.76 E-value=6.3e-06 Score=83.07 Aligned_cols=200 Identities=11% Similarity=-0.005 Sum_probs=107.3
Q ss_pred EEEEecCCCCEEEEEeCCCe-------------------EEEEEccCCccccccceeecccccccCccccccccccceeE
Q 011368 258 SAEFHPIYCNLLAYSSSRGF-------------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 318 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 318 (487)
.++++|++ .+++.++.++. |..+|.++++.. -.++.... .... +. ....+.-
T Consensus 239 ~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~----W~~~~~~~--d~wd-~~-~~~~~~l 309 (689)
T 1yiq_A 239 SFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV----WHYQTTPG--DAWD-YT-ATQHMIL 309 (689)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE----EEEESSTT--CCSC-CC-CCSCEEE
T ss_pred ceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee----EeeecCCc--cccc-cc-CCCCcEE
Confidence 57889988 88888887764 999999998754 22222000 0000 00 0111222
Q ss_pred EEEcCCCC---EEEEEe-CCeEEEEeCCCCCceeeeeecccc-cc-------------------------cccccccCCC
Q 011368 319 IKFANDGQ---HLLSRD-YMNLKLWDIRMDSTPVATFKIHEH-LR-------------------------PKLCDLYNND 368 (487)
Q Consensus 319 v~~s~~~~---~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~~~ 368 (487)
.....+|+ .++.++ +|.++++|.++ ++++........ .. ...++-....
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg 388 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA 388 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc
Confidence 22223564 666665 49999999987 777644322110 00 0000000000
Q ss_pred CcceeeEEEEcCCCCEEEEEcC---------------------------------------------CCcEEEEEeCCCC
Q 011368 369 SIFDKFECSVSGDGLHFATGSY---------------------------------------------SNLLRIFSHGVGS 403 (487)
Q Consensus 369 ~~~~~~~~~~s~d~~~l~sg~~---------------------------------------------dg~i~iwd~~~~~ 403 (487)
..+ ..++++|+..++++... +|.|+.||+.+++
T Consensus 389 ~~w--~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 389 HDW--QPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp SCS--SCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cCC--CcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 011 24789998887776522 3789999999995
Q ss_pred ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCcccccc-ccCCCeEEEEEcCCCCE-EEEec
Q 011368 404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSY-NLSSKLLHLAWHPTTNL-IACAN 478 (487)
Q Consensus 404 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~-~~~~~v~~~~~spd~~~-la~~s 478 (487)
. ....+.+.. +....+.. .+.+ ++.|+.|+. +.| .+++.+.... +....-.-+.|..||+. +++.+
T Consensus 467 ~-~W~~~~~~~-~~~g~~~t--aggl-----vf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 467 A-AWEVPYVTI-FNGGTLST--AGNL-----VFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp E-EEEEEESSS-CCCCEEEE--TTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred e-EeEccCCCC-ccCccceE--CCCE-----EEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 4 444444432 33333333 2223 677888887 888 4555554433 22211234667889875 44443
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.75 E-value=3.9e-06 Score=84.41 Aligned_cols=198 Identities=9% Similarity=-0.045 Sum_probs=106.9
Q ss_pred EEEEEecCCCCEEEEEeCCC-------------------eEEEEEccCCccccccceeecccccccCcccccccccccee
Q 011368 257 TSAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 317 (487)
Q Consensus 257 ~~v~~~p~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 317 (487)
..++++|++ ..++.++.++ .|..+|.++++.. -.++.... ...-+.. .....
T Consensus 246 ~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~----W~~~~~~~---d~wd~~~-~~~p~ 316 (677)
T 1kb0_A 246 DSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK----WHYQETPG---DNWDYTS-TQPMI 316 (677)
T ss_dssp SCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE----EEEESSTT---CCSCCCC-CSCCE
T ss_pred cceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE----EEEecCCC---ccccccc-CCCcE
Confidence 357889988 8888887664 5899999998744 22222000 0000000 11222
Q ss_pred EEEEcCCC---CEEEEEe-CCeEEEEeCCCCCceeeeeeccccc-c--------c-------------ccccccCCCCcc
Q 011368 318 DIKFANDG---QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHL-R--------P-------------KLCDLYNNDSIF 371 (487)
Q Consensus 318 ~v~~s~~~---~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~-~--------~-------------~~~~~~~~~~~~ 371 (487)
-+....+| ..++.++ +|.++++|..+ ++++..+...... . + ..++-......+
T Consensus 317 l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w 395 (677)
T 1kb0_A 317 LADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW 395 (677)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS
T ss_pred EEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCC
Confidence 23333467 5677775 49999999987 7777665432110 0 0 000000000011
Q ss_pred eeeEEEEcCCCCEEEEEcC-------------------------------------------CCcEEEEEeCCCCceeEE
Q 011368 372 DKFECSVSGDGLHFATGSY-------------------------------------------SNLLRIFSHGVGSAGGIT 408 (487)
Q Consensus 372 ~~~~~~~s~d~~~l~sg~~-------------------------------------------dg~i~iwd~~~~~~~~~~ 408 (487)
..++++|++.++++... .|.|..||+.+++. ...
T Consensus 396 --~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~ 472 (677)
T 1kb0_A 396 --HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWS 472 (677)
T ss_dssp --SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEE
T ss_pred --CCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-Eee
Confidence 26789999888877543 27899999999854 333
Q ss_pred EeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCcccccc-ccCCCeEEEEEcCCCCEEE
Q 011368 409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSY-NLSSKLLHLAWHPTTNLIA 475 (487)
Q Consensus 409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~-~~~~~v~~~~~spd~~~la 475 (487)
.+. ..++....+.. ++.. ++.|+.++. +.| .+++.+.... +....-.-+.|.++|+.++
T Consensus 473 ~~~-~~~~~~g~~~~--~g~~-----v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 473 VEH-VSPWNGGTLTT--AGNV-----VFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEE-SSSCCCCEEEE--TTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cCC-CCCCcCcceEe--CCCE-----EEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 332 23344444444 2333 566777777 777 3444444332 2211223356778887544
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.73 E-value=0.00018 Score=74.10 Aligned_cols=342 Identities=10% Similarity=0.016 Sum_probs=182.8
Q ss_pred cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
...|.++...++|.+.+ |..++.+.+|+..+++. ..+...... ...+.
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~----------------------------~~~~~~~~~---~~~l~ 261 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEI----------------------------KNYLHSPSN---PKSIS 261 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEE----------------------------EEECCCTTC---TTSCS
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeE----------------------------EEeecCCCC---ccccC
Confidence 45688888888887555 44444488888665432 111100000 00000
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
...|.++.. .++|.+ ..|+.+ -|.+|+..++...........+
T Consensus 262 -~~~i~~i~~--d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~-------------------------------- 304 (795)
T 4a2l_A 262 -SNYIRSLAM--DSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVEN-------------------------------- 304 (795)
T ss_dssp -CSBEEEEEE--CTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTST--------------------------------
T ss_pred -CCeEEEEEE--cCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCC--------------------------------
Confidence 156888887 456654 445555 5888998777654432111000
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
..-....|.++...++|.+.+...++-|..|+..... +..+...+..-.-....|.++...++| . |-.
T Consensus 305 --------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWi 372 (795)
T 4a2l_A 305 --------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWI 372 (795)
T ss_dssp --------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTS-C-EEE
T ss_pred --------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEE
Confidence 0123456999999999987766677778888876322 222211110001124569999998887 4 555
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
|+.++.|..||..++... .+......+. . ......|.++...++|+.|..|. ++.|.+||..+ ++ ...
T Consensus 373 Gt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~--~--~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~ 441 (795)
T 4a2l_A 373 GTNDGGLNLYNPITQRFT-----SYTLQEDESA--R--GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VEN 441 (795)
T ss_dssp EESSSCEEEECTTTCCEE-----EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEE
T ss_pred EECCCCeEEEcCCCCcEE-----EEecCCCCcc--c--CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEE
Confidence 777777999998775421 1111000000 0 00125789999989998444454 47899999875 33 333
Q ss_pred eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe-----ccCCccccceEeeCC
Q 011368 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-----AGKNENRKPILQAAP 425 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~ 425 (487)
+....... ....|.++...++|.+.+.. . +.+.+|+..++........ .....+.++... .
T Consensus 442 ~~~~~~~l----------~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d--~ 507 (795)
T 4a2l_A 442 FNQRNSQL----------VNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD--S 507 (795)
T ss_dssp ECTTTSCC----------SCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC--T
T ss_pred eecCCCCc----------CCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC--C
Confidence 32111000 01123588888888866544 4 4588899876632211110 011233333332 2
Q ss_pred ccccccccceeeecccceecCCCCCccccc-------cccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 426 RARRSSLSNLTRGLYRQAHENSSSGHHELS-------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 426 ~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~-------~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
++.+ -.|...+...++........ .-....|.++...++|.+.+.... +++.|+
T Consensus 508 ~g~l------Wigt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d 568 (795)
T 4a2l_A 508 HKRL------WIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFN 568 (795)
T ss_dssp TCCE------EEEESSCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEE
T ss_pred CCCE------EEEeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeEC
Confidence 4443 22333444444211111011 113457899999999987665554 888875
No 238
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.69 E-value=5.6e-05 Score=68.06 Aligned_cols=235 Identities=12% Similarity=0.135 Sum_probs=130.1
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
.....++|+++|+++++-..++.|..||.++.. ...+. -.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~----------------------------~~~~~-~~----------- 71 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------------------QIHAT-VE----------- 71 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE----------------------------EEEEE-CS-----------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce----------------------------EEEEe-CC-----------
Confidence 457789999999977776678889888865431 11111 11
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+..+++ .++++++++..... .|..++..+++...+...
T Consensus 72 -~~p~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~----------------------------------- 113 (306)
T 2p4o_A 72 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL----------------------------------- 113 (306)
T ss_dssp -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred -CCceeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-----------------------------------
Confidence 45788998 57888666554333 355566666665433110
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCcEEEEEEecCCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
........++..+++..+++. .++.|+.+|.......+...... .......-.....+ +|++ .
T Consensus 114 -----------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg-~ 179 (306)
T 2p4o_A 114 -----------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG-N 179 (306)
T ss_dssp -----------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET-T
T ss_pred -----------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC-C
Confidence 011112344444555555555 68888888876321111111000 00011111234555 7887 5
Q ss_pred EEEEE-eCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368 268 LLAYS-SSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 344 (487)
Q Consensus 268 ~l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~ 344 (487)
.|+.+ ...+.|..+|+.. +... ....+.. ......+++.++|+++++.. .+.|.++|..
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-- 241 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-- 241 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECBTTCCEEEECTT--
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeCCCCeEEEECCC--
Confidence 55544 5578999999875 3211 1122211 12457789999998766654 4889999874
Q ss_pred Cceee--eeecccccccccccccCCCCcceeeEEEEc---CCCCEEEEEcCCC
Q 011368 345 STPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSN 392 (487)
Q Consensus 345 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~~l~sg~~dg 392 (487)
++... .+...-. ..++++|. ||++.|+.++..+
T Consensus 242 G~~~~~~~~~~~~~---------------~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 242 RSTTIIAQAEQGVI---------------GSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCEEEEECGGGTCT---------------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCEEEEeecccccC---------------CceEEEEecccCCCCEEEEECCCC
Confidence 44322 2221101 12589998 8887777665543
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.64 E-value=7.3e-06 Score=71.11 Aligned_cols=209 Identities=9% Similarity=0.004 Sum_probs=123.9
Q ss_pred eeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 116 INRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 116 I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
...+.| ++++.++++.+. ++.|+++|..+++.......
T Consensus 23 ~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------------------------------------- 62 (266)
T 2iwa_A 23 TQGLVY--AENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-------------------------------------- 62 (266)
T ss_dssp EEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--------------------------------------
T ss_pred cccEEE--eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--------------------------------------
Confidence 578999 466655555543 68999999999987654221
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
.. ......+++. +..| ++. .++.+.++|..+. +.+..+... .+. ...++++| ..+++
T Consensus 63 -------~~-~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-~v~~~i~~g----~~~-----g~glt~Dg-~~l~v 121 (266)
T 2iwa_A 63 -------DD-SYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-SNIKNFTHQ----MKD-----GWGLATDG-KILYG 121 (266)
T ss_dssp -------CT-TCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT-EEEEEEECC----SSS-----CCEEEECS-SSEEE
T ss_pred -------CC-CcceEEEEEe--CCEEEEEEecCCEEEEEECCCC-cEEEEEECC----CCC-----eEEEEECC-CEEEE
Confidence 11 1112244554 4444 445 8999999999844 444443211 011 12355677 66666
Q ss_pred EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
+..++.|.++|..+.+.. ..+.. ...+ ..-..++.+.|. +|+..+... .+.|.+.|..+ ++.+..
T Consensus 122 s~gs~~l~viD~~t~~v~----~~I~V-g~~~-------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t-g~V~~~ 187 (266)
T 2iwa_A 122 SDGTSILYEIDPHTFKLI----KKHNV-KYNG-------HRVIRLNELEYI-NGEVWANIWQTDCIARISAKD-GTLLGW 187 (266)
T ss_dssp ECSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT-CCEEEE
T ss_pred ECCCCeEEEEECCCCcEE----EEEEE-CCCC-------cccccceeEEEE-CCEEEEecCCCCeEEEEECCC-CcEEEE
Confidence 667889999999887654 33332 0000 001236678888 675444443 48999999997 888887
Q ss_pred eecccccccc-cccccCCCCcceeeEEEEcCCCCE-EEEEcCCCcEEEEEeCCC
Q 011368 351 FKIHEHLRPK-LCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 351 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~d~~~-l~sg~~dg~i~iwd~~~~ 402 (487)
+......... .......+. ...++|+|+++. ++++...+.+++.++...
T Consensus 188 I~~~g~~~~~~~~~~~~~~v---~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 188 ILLPNLRKKLIDEGFRDIDV---LNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EECHHHHHHHHHTTCTTCCC---EEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EECCCcccccccccccccCc---eEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 7643110000 000000001 158999999765 556667789999998754
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.64 E-value=6.8e-06 Score=78.92 Aligned_cols=147 Identities=13% Similarity=0.164 Sum_probs=94.1
Q ss_pred CCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE-e-cCCCCEEEEEe----------------
Q 011368 214 SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-H-PIYCNLLAYSS---------------- 273 (487)
Q Consensus 214 ~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~-p~~~~~l~~~~---------------- 273 (487)
+||++++.+ .+.+|.+.|++ ..++.+++.++ ....+..+++ + |++ .++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip------~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCG
T ss_pred cCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCC------CCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccc
Confidence 388888887 67789999999 44566654322 1234678887 4 898 8887774
Q ss_pred --CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCC----------------e
Q 011368 274 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM----------------N 335 (487)
Q Consensus 274 --~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~----------------~ 335 (487)
.++.+.+.|..+.+.. ..+.. .+....++++|+|+++++.+.+ .
T Consensus 171 ~~~~~~vtvID~~t~~v~----~qI~V--------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp GGEEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cccCceEEEEECCCCeEE----EEEEe--------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 2457889999886543 22222 1234667889999998876521 1
Q ss_pred EEEEe-----------------------CCCC-Cce-eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-
Q 011368 336 LKLWD-----------------------IRMD-STP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS- 389 (487)
Q Consensus 336 i~iwd-----------------------~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~- 389 (487)
|.+.| .++. +.. +..+.....+ .++.++|||+++++++
T Consensus 233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P----------------hGv~~sPDGk~v~V~~~ 296 (595)
T 1fwx_A 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKKHLCVAGK 296 (595)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC----------------CCEEECTTSSEEEEECT
T ss_pred EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc----------------eEEEEcCCCCEEEEeCC
Confidence 44444 3320 011 2222222211 4799999999877665
Q ss_pred CCCcEEEEEeCCC
Q 011368 390 YSNLLRIFSHGVG 402 (487)
Q Consensus 390 ~dg~i~iwd~~~~ 402 (487)
.+.+|.++|+.+.
T Consensus 297 ~s~~VsVid~~~~ 309 (595)
T 1fwx_A 297 LSPTVTVLDVTRF 309 (595)
T ss_dssp TSSBEEEEEGGGH
T ss_pred CCCeEEEEECccc
Confidence 6789999999864
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.64 E-value=2.1e-06 Score=82.45 Aligned_cols=215 Identities=8% Similarity=0.085 Sum_probs=124.1
Q ss_pred CCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368 126 NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD 204 (487)
Q Consensus 126 ~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
||+++.... .+..|.+.|+.+.+...+.... ..
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip----------------------------------------------~g 133 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP----------------------------------------------NA 133 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS----------------------------------------------SC
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC----------------------------------------------CC
Confidence 567766654 5667999999998866643211 12
Q ss_pred CceeEEEe-C-CCCCEEEEe-------------------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368 205 FNINSISN-N-SDCETFVSA-------------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 263 (487)
Q Consensus 205 ~~v~~i~~-s-~~~~~l~s~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 263 (487)
.....+++ + |++++++++ .++.+.+.|.++.....++. ..+ ....++++|
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~------Vgg---~pd~~~~sp 204 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL------VSG---NLDNCDADY 204 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE------ESS---CCCCEEECS
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE------eCC---CccceEECC
Confidence 23556665 3 666666555 24578888888544333321 112 235577899
Q ss_pred CCCCEEEEEeCCC---------------eEEEEEccCCccc--------cccceeecccccccCcc--ccccccccceeE
Q 011368 264 IYCNLLAYSSSRG---------------FVRLVDMRQSALC--------DHSARILRDAAESHGSK--SFFTEIIASISD 318 (487)
Q Consensus 264 ~~~~~l~~~~~dg---------------~i~iwd~~~~~~~--------~~~~~~~~~h~~~~~~~--~~~~~~~~~v~~ 318 (487)
+| +++++.+.+. .|.+.|....... ...+..+... ...... ..++ -.....+
T Consensus 205 dG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~-~~~~~~~~~~Ip-vg~~PhG 281 (595)
T 1fwx_A 205 EG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR-KEASSLFTRYIP-IANNPHG 281 (595)
T ss_dssp SS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS-GGGCCSSEEEEE-EESSCCC
T ss_pred CC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc-ccCCceeEEEEe-cCCCceE
Confidence 98 8888777542 3555554432100 0111222220 000000 0000 0235678
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEeCCCCCc------------eeeeeecccccccccccccCCCCcceeeEEEEcCCCCE
Q 011368 319 IKFANDGQHLLSRD--YMNLKLWDIRMDST------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 384 (487)
Q Consensus 319 v~~s~~~~~l~s~~--d~~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 384 (487)
+.++|||+++++++ +.+|.++|+.+ .+ .+..+.....+ +.++|+|+|..
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~gP----------------~h~aF~~dG~a 344 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGLGP----------------LHTAFDGRGNA 344 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCSCE----------------EEEEECTTSEE
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCCCc----------------ceEEECCCCeE
Confidence 99999999998875 49999999975 21 22233322222 58999999944
Q ss_pred EEEEcCCCcEEEEEeCCC---------CceeEEEeccCCc
Q 011368 385 FATGSYSNLLRIFSHGVG---------SAGGITVEAGKNE 415 (487)
Q Consensus 385 l~sg~~dg~i~iwd~~~~---------~~~~~~~~~~~~~ 415 (487)
.++.--|+.|.+||+.+. ...+..+..|..+
T Consensus 345 Y~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 345 YTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred EEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 445667899999999872 2446666666543
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=3.5e-05 Score=69.97 Aligned_cols=254 Identities=11% Similarity=0.057 Sum_probs=142.3
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc-------
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY------- 106 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------- 106 (487)
...+++|+++|+++.++..++.|..|+..+++. ..+.... .+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~----------------------------~~~~~~~-~~~~~~~~~g~ 70 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF----------------------------VDFAYAS-PYWNKAFCENS 70 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE----------------------------EEEEESC-TTCCHHHHTTC
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce----------------------------EEEeccc-ccccccccccc
Confidence 356788999999788888889999998765432 1111000 0000
Q ss_pred --ccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368 107 --LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (487)
Q Consensus 107 --~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (487)
.........+..+++ .+ ++. |+.+...+.|..+|..++....+...
T Consensus 71 ~~~~~~~~~~~p~gi~~--~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~---------------------------- 119 (322)
T 2fp8_A 71 TDAEKRPLCGRTYDISY--NLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATS---------------------------- 119 (322)
T ss_dssp CCGGGHHHHCCEEEEEE--ETTTTE-EEEEETTTEEEEECTTCEECEEEESE----------------------------
T ss_pred cchhccccCCCCceEEE--cCCCCc-EEEEECCCCEEEEeCCCCEEEEeccc----------------------------
Confidence 000001135788888 44 454 45554445588888765543322100
Q ss_pred eeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-c-----------------CCeEEEEEccCCCceeEEeec
Q 011368 184 HGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDM 244 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~ 244 (487)
.........+.+++.+ +|++.++. . ++.|..+|..+. ......
T Consensus 120 ---------------~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~~~-- 181 (322)
T 2fp8_A 120 ---------------VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK-ETTLLL-- 181 (322)
T ss_dssp ---------------ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT-EEEEEE--
T ss_pred ---------------CCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC-EEEEec--
Confidence 0001123467899999 89877764 3 266888887632 222111
Q ss_pred CCCCCCCCCCcEEEEEEecCCCCEEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368 245 KPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 323 (487)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~ 323 (487)
........++++|++ +.|+.+ +..+.|..|++.....- ....+.. ..+ ...+++.+
T Consensus 182 ------~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~ 238 (322)
T 2fp8_A 182 ------KELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNA 238 (322)
T ss_dssp ------EEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECT
T ss_pred ------cCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECC
Confidence 011224678999998 766555 55689999998753210 0111111 012 67789999
Q ss_pred CCCEEEEE-e----------CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368 324 DGQHLLSR-D----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 392 (487)
Q Consensus 324 ~~~~l~s~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg 392 (487)
+|++.++. . .+.|..+|.. ++.+..+....... ...++.+++ .++++.++...++
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCS
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCC
Confidence 99877764 3 2567777763 66666665443210 001135666 3666666666778
Q ss_pred cEEEEEeCCC
Q 011368 393 LLRIFSHGVG 402 (487)
Q Consensus 393 ~i~iwd~~~~ 402 (487)
.|.++++...
T Consensus 305 ~i~~~~~~~~ 314 (322)
T 2fp8_A 305 SVGILVYDKK 314 (322)
T ss_dssp EEEEEEC---
T ss_pred ceEEEecccc
Confidence 9999998644
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.63 E-value=2.5e-06 Score=77.87 Aligned_cols=211 Identities=10% Similarity=0.028 Sum_probs=118.3
Q ss_pred CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccce
Q 011368 216 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 294 (487)
Q Consensus 216 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 294 (487)
+..+..+ .++.|..+|.. +...... ......+.++...+++ . +..++.++.|..+|.. ++.. .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~----~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEK----W 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEE----E
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEe----E
Confidence 3455556 88999999987 4443322 1122334555666676 4 6667888999999988 5432 2
Q ss_pred eecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceee
Q 011368 295 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 374 (487)
Q Consensus 295 ~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (487)
.+.. ....+.++...+++.+.++. +.|..+| .+ +..+.........+ .
T Consensus 171 ~~~~-------------~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~---------------~ 218 (330)
T 3hxj_A 171 RFKT-------------NDAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWTV---------------T 218 (330)
T ss_dssp EEEC-------------SSCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCCC---------------S
T ss_pred EEec-------------CCCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcce---------------e
Confidence 2221 02346667777788766555 8899999 54 55555554332211 3
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC-CCcc
Q 011368 375 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHH 452 (487)
Q Consensus 375 ~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~-~~~~ 452 (487)
++...++|. |..++.++.|..++. ++ .....+.........+.... ++. +..++.++. ..++. ++..
T Consensus 219 ~~~~~~~g~-l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~~~~~~~~--~g~------l~v~t~~ggl~~~d~~g~~~ 287 (330)
T 3hxj_A 219 RPAISEDGT-IYVTSLDGHLYAINP-DG-TEKWRFKTGKRIESSPVIGN--TDT------IYFGSYDGHLYAINPDGTEK 287 (330)
T ss_dssp CCEECTTSC-EEEEETTTEEEEECT-TS-CEEEEEECSSCCCSCCEECT--TSC------EEEECTTCEEEEECTTSCEE
T ss_pred ceEECCCCe-EEEEcCCCeEEEECC-CC-CEeEEeeCCCCccccceEcC--CCe------EEEecCCCCEEEECCCCcEE
Confidence 677888875 455677788888874 34 33344443333333333321 333 455666644 44432 2222
Q ss_pred ccccccCCCeEEEEEcCCCCEEEEecCCeEEEE
Q 011368 453 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 485 (487)
Q Consensus 453 ~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~ 485 (487)
.........+.++...++|.+.+.+.+..+++.
T Consensus 288 ~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 288 WNFETGSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp EEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred EEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 222222344556677778876664444445543
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=2e-05 Score=68.40 Aligned_cols=209 Identities=7% Similarity=-0.018 Sum_probs=124.6
Q ss_pred cEEEEEEcCCCCEEEEEec--CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec--CCCcccccccc
Q 011368 34 IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLKS 109 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~ 109 (487)
....++|++++.++++.+. ++.|+++|..+++.. ..+. .+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~---------------------------~~i~l~~~--------- 65 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE---------------------------NIHKMDDS--------- 65 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE---------------------------EEEECCTT---------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE---------------------------EEEecCCC---------
Confidence 3679999998765555443 579999999988652 2221 21
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.....+++. ++.+.++.-.++.+.++|..+.+......
T Consensus 66 ----~fgeGi~~~---g~~lyv~t~~~~~v~viD~~t~~v~~~i~----------------------------------- 103 (266)
T 2iwa_A 66 ----YFGEGLTLL---NEKLYQVVWLKNIGFIYDRRTLSNIKNFT----------------------------------- 103 (266)
T ss_dssp ----CCEEEEEEE---TTEEEEEETTCSEEEEEETTTTEEEEEEE-----------------------------------
T ss_pred ----cceEEEEEe---CCEEEEEEecCCEEEEEECCCCcEEEEEE-----------------------------------
Confidence 112345552 23444555578999999999877654421
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
.+ ... ...+++||+.++.+ .++.|.++|..+.. ....+.... -...-..+..+.|. ++ ..
T Consensus 104 -----------~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~Vg~--~~~p~~~~nele~~-dg-~l 164 (266)
T 2iwa_A 104 -----------HQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNVKY--NGHRVIRLNELEYI-NG-EV 164 (266)
T ss_dssp -----------CC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEECEE--TTEECCCEEEEEEE-TT-EE
T ss_pred -----------CC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEECC--CCcccccceeEEEE-CC-EE
Confidence 11 011 12245578888888 88899999998544 343332110 00111236778888 66 66
Q ss_pred EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC-CeEEEEeCCC
Q 011368 269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRM 343 (487)
Q Consensus 269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d-~~i~iwd~~~ 343 (487)
++....++.|.+.|..+++.. ..+......+.....-..-......|+|+|+++.++.+ .. +.+.+.++..
T Consensus 165 yvn~~~~~~V~vID~~tg~V~----~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLL----GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEE----EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEecCCCCeEEEEECCCCcEE----EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 666656889999999998765 33332000000000000001356899999998866654 33 8888888864
No 245
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.58 E-value=4.1e-05 Score=71.25 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=109.2
Q ss_pred CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCc
Q 011368 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFN 206 (487)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (487)
+..++.++.++.|..+|..+++........... .. ......+
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~-------------------------------------~~-~~~~~~~ 184 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS-------------------------------------LS-LRGESAP 184 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-------------------------------------------CCCCCC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc-------------------------------------ee-ecCCCCc
Confidence 347788888999999999988766543211100 00 0111111
Q ss_pred eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC---CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368 207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 282 (487)
Q Consensus 207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 282 (487)
+ .. +..++.+ .++.+..+|..++......-...+.. +............ .+ ..++.++.++.+..+|
T Consensus 185 ~----~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 185 T----TA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALD 255 (376)
T ss_dssp E----EE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ET-TEEEEECTTSCEEEEE
T ss_pred E----EE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEE
Confidence 1 11 3466667 88999999998655544321000000 0000000001111 13 5677888899999999
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeeccccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKL 361 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 361 (487)
.++++.. +... ......+... +..+..+ .++.|..+|..+ ++.+..........
T Consensus 256 ~~tG~~~------w~~~-------------~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~--- 310 (376)
T 3q7m_A 256 LRSGQIM------WKRE-------------LGSVNDFIVD--GNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL--- 310 (376)
T ss_dssp TTTCCEE------EEEC-------------CCCEEEEEEE--TTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSC---
T ss_pred CCCCcEE------eecc-------------CCCCCCceEE--CCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCc---
Confidence 9988743 2220 0123334433 4455555 458999999987 66665554211110
Q ss_pred ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368 362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 411 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 411 (487)
. ..... .+..|+.++.+|.++++|..+++. ......
T Consensus 311 --------~---~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~-~~~~~~ 346 (376)
T 3q7m_A 311 --------L---TSPVL--YNGNLVVGDSEGYLHWINVEDGRF-VAQQKV 346 (376)
T ss_dssp --------C---CCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEEEEC
T ss_pred --------c---cCCEE--ECCEEEEEeCCCeEEEEECCCCcE-EEEEec
Confidence 0 12222 246788899999999999999854 333433
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.55 E-value=2.7e-06 Score=77.66 Aligned_cols=219 Identities=12% Similarity=0.067 Sum_probs=114.4
Q ss_pred ceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccC
Q 011368 206 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 285 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~ 285 (487)
.+.++...+++.+++...+ |..+|.. +.... ............... + ..+..++.++.|..+|..
T Consensus 61 ~~~~~~~~~~g~l~v~t~~--l~~~d~~-g~~~~--------~~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~- 125 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK--VYAINPD-GTEKW--------RFDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD- 125 (330)
T ss_dssp EEECCEETTTTEECCSSCE--EEEECCC-GGGGG--------GSCC-----CCEEEE-T--TEEEEECTTSEEEEECTT-
T ss_pred cccceEEecCCcEEEecCc--EEEECCC-CcEEE--------EEECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC-
Confidence 3466667666654443344 8888753 33221 111111112223333 4 567788889999999988
Q ss_pred CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccccccccccc
Q 011368 286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 365 (487)
Q Consensus 286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (487)
++.. ..... ....+.++...+++.+++...++.|..+|.. +..+..+......+
T Consensus 126 g~~~----~~~~~-------------~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~------- 179 (330)
T 3hxj_A 126 GTEK----WRFKT-------------KKAIYATPIVSEDGTIYVGSNDNYLYAINPD--GTEKWRFKTNDAIT------- 179 (330)
T ss_dssp SCEE----EEEEC-------------SSCCCSCCEECTTSCEEEECTTSEEEEECTT--SCEEEEEECSSCCC-------
T ss_pred CCEE----EEEcC-------------CCceeeeeEEcCCCEEEEEcCCCEEEEECCC--CCEeEEEecCCCce-------
Confidence 5432 11121 0234556677778876665556999999986 55555554332221
Q ss_pred CCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-e
Q 011368 366 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H 444 (487)
Q Consensus 366 ~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~ 444 (487)
.++...+++.+++ ++ +.|..+| .+++ ...........+..+...+ ++. +..+..++. .
T Consensus 180 --------~~~~~d~~g~l~v-~t--~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~--~g~------l~v~t~~~gl~ 238 (330)
T 3hxj_A 180 --------SAASIGKDGTIYF-GS--DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISE--DGT------IYVTSLDGHLY 238 (330)
T ss_dssp --------SCCEECTTCCEEE-ES--SSEEEEC-TTSC-EEEEECCSSCCCSCCEECT--TSC------EEEEETTTEEE
T ss_pred --------eeeEEcCCCEEEE-Ee--CEEEEEC-CCCc-EEEEEccCCcceeceEECC--CCe------EEEEcCCCeEE
Confidence 3667777877554 44 7899999 6553 3444444445555555543 333 344444333 3
Q ss_pred cCCC-CCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 445 ENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 445 ~w~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
.+.. +............+..+...+++.+.+....++++.|+
T Consensus 239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 239 AINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred EECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC
Confidence 3322 22222211112222334555566555444444788775
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.52 E-value=0.00023 Score=64.01 Aligned_cols=203 Identities=10% Similarity=0.086 Sum_probs=113.7
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.....++| .+++.++++-..++.|..||..+.. ...
T Consensus 32 ~~pegia~--~~~g~lyv~d~~~~~I~~~d~~g~~-~~~----------------------------------------- 67 (306)
T 2p4o_A 32 TFLENLAS--APDGTIFVTNHEVGEIVSITPDGNQ-QIH----------------------------------------- 67 (306)
T ss_dssp CCEEEEEE--CTTSCEEEEETTTTEEEEECTTCCE-EEE-----------------------------------------
T ss_pred CCcceEEE--CCCCCEEEEeCCCCeEEEECCCCce-EEE-----------------------------------------
Confidence 34678999 5678877776678889888876532 211
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
.........+++.++++++++. ... .|..++..+ +....+... . .......++..+.+ ..++
T Consensus 68 -------~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v 132 (306)
T 2p4o_A 68 -------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTL-----P-DAIFLNGITPLSDT-QYLT 132 (306)
T ss_dssp -------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEEC-----T-TCSCEEEEEESSSS-EEEE
T ss_pred -------EeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeEEEEEeC-----C-CccccCcccccCCC-cEEE
Confidence 1112357889999999977665 332 466666653 333333221 1 11223445555554 4454
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCce-
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP- 347 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~- 347 (487)
+-..++.|..+|...+.... ..... ..... ...+.-.....+ +|++++|..++ .+.|..+++...+..
T Consensus 133 ~d~~~g~i~~~d~~~~~~~v---~~~~~-~~~~~---~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~ 203 (306)
T 2p4o_A 133 ADSYRGAIWLIDVVQPSGSI---WLEHP-MLARS---NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG 203 (306)
T ss_dssp EETTTTEEEEEETTTTEEEE---EEECG-GGSCS---STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC
T ss_pred EECCCCeEEEEeCCCCcEeE---EEECC-ccccc---cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC
Confidence 44468888888876542100 00000 00000 000001123445 78888877764 389999998642221
Q ss_pred -eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368 348 -VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~ 400 (487)
...+.....+ ..++++++|+++++....+.|.+++..
T Consensus 204 ~~~~~~~~~~P----------------~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 204 EPEIFVEQTNI----------------DDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp CCEEEEESCCC----------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred ccEEEeccCCC----------------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 1111111111 379999999887777777899999864
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=0.00058 Score=70.24 Aligned_cols=248 Identities=10% Similarity=0.014 Sum_probs=132.2
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEee-------cCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 276 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 276 (487)
...|.++...++|.+.+....+-|.++|..... ...... .....-.-....|.++...++| . |-.|+.++
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQ-FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSS
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCe-eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCC
Confidence 456899999888876665565678888887332 111100 0000011234579999999887 4 55667677
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccc
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 356 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 356 (487)
.|..++...+.. ..+.. ........ ......|.++...++|.+.+...++-|..||..+ + ....+.....
T Consensus 334 Gl~~~~~~~~~~-----~~~~~-~~~~~~~~--~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~ 403 (781)
T 3v9f_A 334 GINFISNAPPTF-----HTWSY-SPTQMNES--SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENRE 403 (781)
T ss_dssp CEEEECSSCCSC-----EEEC-----CCCSS--CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----
T ss_pred eEEEeCCCCCcc-----eeecc-CccccccC--CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCC
Confidence 788888776432 11211 00000000 0013568999999888766655457788898753 2 2222211000
Q ss_pred cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec---cCCccccceEeeCCcccccccc
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---GKNENRKPILQAAPRARRSSLS 433 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ 433 (487)
. ....|.++...++|.+.+ |+.++-|..++..+++. ..+.. ....+.++... +++.+
T Consensus 404 ~-----------~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d--~~g~l---- 463 (781)
T 3v9f_A 404 L-----------LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYED--KNKKI---- 463 (781)
T ss_dssp C-----------CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEEC--TTSEE----
T ss_pred C-----------CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEEC--CCCCE----
Confidence 0 011235888888887655 67667788898876632 22211 12333333332 24443
Q ss_pred ceeeecccceecCCCCC-cccccc------ccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368 434 NLTRGLYRQAHENSSSG-HHELSY------NLSSKLLHLAWHPTTNLIACANGNSLFFHY 486 (487)
Q Consensus 434 ~l~~g~~~~~~~w~~~~-~~~~~~------~~~~~v~~~~~spd~~~la~~s~~~~~i~~ 486 (487)
-.|...+...++... ...... .....|.++...++|.+.+....++++.|+
T Consensus 464 --wigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 464 --WIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT 521 (781)
T ss_dssp --EEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred --EEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence 333334443332111 111111 114678999999999887766667888875
No 249
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=0.00055 Score=63.69 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=118.9
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+..++|.+ .++.++++-...+.|..+++.++....+.
T Consensus 116 ~~~~gl~~d~-~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---------------------------------------- 154 (386)
T 3v65_B 116 ENAIALDFHH-RRELVFWSDVTLDRILRANLNGSNVEEVV---------------------------------------- 154 (386)
T ss_dssp SCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCCEEEEE----------------------------------------
T ss_pred CccEEEEEec-CCCeEEEEeCCCCcEEEEecCCCCcEEEE----------------------------------------
Confidence 4578899953 34455555557788888888766533321
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
.........+++.+.+..|+.+ ..+.|.+.+++. .....++ .........++++|.+ ..|+.
T Consensus 155 -------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg-~~~~~l~-------~~~l~~P~giavdp~~-g~ly~ 218 (386)
T 3v65_B 155 -------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLL-------WQSLEKPRAIALHPME-GTIYW 218 (386)
T ss_dssp -------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS-CSCEEEE-------CSSCSCEEEEEEETTT-TEEEE
T ss_pred -------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC-CceEEee-------cCCCCCCcEEEEEcCC-CeEEE
Confidence 1222334678888765555554 677888888873 3222221 1223456899999976 45544
Q ss_pred Ee-CC-CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCce
Q 011368 272 SS-SR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP 347 (487)
Q Consensus 272 ~~-~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~ 347 (487)
+. .. +.|..+++...... ..... .-.....++++|++..|..++ .+.|..+|+.. ...
T Consensus 219 td~~~~~~I~r~~~dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~ 280 (386)
T 3v65_B 219 TDWGNTPRIEASSMDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHR 280 (386)
T ss_dssp EECSSSCEEEEEETTSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSC
T ss_pred eccCCCCEEEEEeCCCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-Cee
Confidence 44 44 67888887654311 11111 023568999998888777765 38899999863 222
Q ss_pred eeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 348 VATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 348 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
...+... ..+ ..+++. ++..+++-...+.|..++..+++.
T Consensus 281 ~~~~~~~~~~P----------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 281 KAVISQGLPHP----------------FAITVF-EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EEEECSSCSSE----------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEECCCCCc----------------eEEEEE-CCEEEEeeCCCCeEEEEECCCCcc
Confidence 2222211 111 377773 455556666778898888666644
No 250
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.48 E-value=0.00046 Score=59.46 Aligned_cols=220 Identities=11% Similarity=0.132 Sum_probs=128.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+..++|+|. ++.++++...++.|...|.. ++......
T Consensus 27 ~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~--------------------------------------- 65 (255)
T 3qqz_A 27 NNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIP--------------------------------------- 65 (255)
T ss_dssp SCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEE---------------------------------------
T ss_pred cCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEe---------------------------------------
Confidence 67999999642 34455556778888888887 55443311
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc--eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
.........|++.+++.++++. .++.+.++++..... .......+. .....+.....++|+|.+ +.|.
T Consensus 66 -------l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d~~~-~~L~ 136 (255)
T 3qqz_A 66 -------LDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCGFEGLAYSRQD-HTFW 136 (255)
T ss_dssp -------CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEETTT-TEEE
T ss_pred -------cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCCcceEEEeCCC-CEEE
Confidence 1223557788999989887887 889999999875553 122222111 012345567999999998 6777
Q ss_pred EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCcee
Q 011368 271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~ 348 (487)
++.+.....+|.+. +..-......... .... . ..+...+.+++++|....|..-+ ...+..+|.. ++.+
T Consensus 137 va~E~~p~~i~~~~-g~~~~~~l~i~~~-~~~~---~--~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~ 207 (255)
T 3qqz_A 137 FFKEKNPIEVYKVN-GLLSSNELHISKD-KALQ---R--QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVI 207 (255)
T ss_dssp EEEESSSEEEEEEE-STTCSSCCEEEEC-HHHH---H--TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEE
T ss_pred EEECcCCceEEEEc-ccccCCceeeecc-hhhc---c--ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEE
Confidence 77665555666655 2100001121111 0000 0 01124578999999866555544 3889999975 5566
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~ 399 (487)
..+......-.. ...+...-.++|.++|+. ...++.+.++++.-
T Consensus 208 ~~~~L~~g~~~l------~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 208 GEMSLTKGSRGL------SHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEECSTTGGGC------SSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred EEEEcCCccCCc------ccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence 555433211000 000111148999999984 44577777666653
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.48 E-value=0.00076 Score=61.77 Aligned_cols=200 Identities=13% Similarity=0.057 Sum_probs=118.9
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+..++|.+ .++.++.+-...+.|..+++.++....+.
T Consensus 73 ~~~~~l~~d~-~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---------------------------------------- 111 (349)
T 3v64_C 73 ENAIALDFHH-RRELVFWSDVTLDRILRANLNGSNVEEVV---------------------------------------- 111 (349)
T ss_dssp SCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEE----------------------------------------
T ss_pred CceEEEEEec-cccEEEEEeccCCceEEEecCCCCceEEE----------------------------------------
Confidence 4578899953 34445555557788888888766533321
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
.........+++.+.+..|+.+ ..+.|.+.+++. .....++ .........++++|.+..++.+
T Consensus 112 -------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~-------~~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 112 -------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLL-------WQSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp -------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE-------CTTCSCEEEEEEETTTTEEEEE
T ss_pred -------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC-CceEEEE-------eCCCCCcceEEEecCcCeEEEe
Confidence 1222345678888755555444 678999999873 3222221 1223456899999966244444
Q ss_pred EeCC-CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCcee
Q 011368 272 SSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV 348 (487)
Q Consensus 272 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~ 348 (487)
-... +.|..+++..... ..+-. ..-.....++++|++..|..++. +.|..+|+.. ....
T Consensus 177 d~~~~~~I~r~~~dG~~~-----~~~~~------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~ 238 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSGR-----RIIAD------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRK 238 (349)
T ss_dssp ECSSSCEEEEEETTSCSC-----EESCC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCE
T ss_pred ccCCCCEEEEEeCCCCCc-----EEEEE------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceE
Confidence 4444 7888888765321 11111 00235689999998887777653 8899999863 2222
Q ss_pred eeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 349 ATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 349 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
..+... ..+ ..+++. ++...++-...+.|..++..+++.
T Consensus 239 ~~~~~~~~~P----------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 239 AVISQGLPHP----------------FAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEECSSCSSE----------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEeCCCCCc----------------eEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 222211 111 377773 455555666678888888666644
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.45 E-value=7.7e-05 Score=63.91 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=113.7
Q ss_pred cceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.-...+.| + ++.++.+.+.+| .|+++|+.+++........
T Consensus 43 ~ftqGL~~--~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----------------------------------- 84 (262)
T 3nol_A 43 AFTEGFFY--R-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG----------------------------------- 84 (262)
T ss_dssp CEEEEEEE--E-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------------------------------
T ss_pred cccceEEE--E-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------------------------------
Confidence 34578888 3 566677777665 8999999999876553211
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
. ...-..++. ++..|.. . .++.+.+||.++.. .+..+. ..+.. ..+.+++ ..|
T Consensus 85 ----------~-~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~-~~~ti~-----~~~eG-----~glt~dg-~~L 139 (262)
T 3nol_A 85 ----------K-RYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR-QVRSFN-----YDGEG-----WGLTHND-QYL 139 (262)
T ss_dssp ----------T-TCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC-EEEEEE-----CSSCC-----CCEEECS-SCE
T ss_pred ----------C-ccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc-EEEEEE-----CCCCc-----eEEecCC-CEE
Confidence 1 111122333 3444444 4 89999999998544 444332 12211 2333566 666
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 348 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~ 348 (487)
+.+..++.|.++|..+.+.. ..+... ... ..-..++.+.|. +|+..+..- ++.|.+.|.++ ++.+
T Consensus 140 ~~SdGs~~i~~iDp~T~~v~----~~I~V~-~~g-------~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t-G~V~ 205 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESLTPV----RTITVT-AHG-------EELPELNELEWV-DGEIFANVWQTNKIVRIDPET-GKVT 205 (262)
T ss_dssp EECCSSSEEEEECTTTCSEE----EEEECE-ETT-------EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT-CBEE
T ss_pred EEECCCCeEEEEcCCCCeEE----EEEEec-cCC-------ccccccceeEEE-CCEEEEEEccCCeEEEEECCC-CcEE
Confidence 66666788999999987654 332220 000 001234567776 676544443 48999999997 8888
Q ss_pred eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368 349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 390 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~ 390 (487)
..+....-...........+.. +.++++|+++.|.+.+.
T Consensus 206 ~~Id~~~L~~~~~~~~~~~~vl---NGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 206 GIIDLNGILAEAGPLPSPIDVL---NGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTGGGGSCSCCSSCCCE---EEEEEETTTTEEEEEET
T ss_pred EEEECCcCccccccccCcCCce---EEEEEcCCCCEEEEECC
Confidence 7776542110000000011122 58999998877776665
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.44 E-value=7.7e-05 Score=63.92 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=95.5
Q ss_pred CceeEEEeCCCCCEEEEe-cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 205 FNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
.....+.|+ ++.++.++ .+| .|+.+|+++++ ....+.+ ... ..-..++. .+..+.+..-.++.+.+|
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk-v~~~~~l-----~~~-~FgeGit~--~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK-TLQQIEL-----GKR-YFGEGISD--WKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC-EEEEEEC-----CTT-CCEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCc-EEEEEec-----CCc-cceeEEEE--eCCEEEEEEeeCCEEEEE
Confidence 345788888 66665665 555 99999999554 4443322 111 11123444 341444444468899999
Q ss_pred EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccc
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK 360 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 360 (487)
|..+.+.. ..+.. .. ....+++|++.|+.++ .+.|.++|..+ .+.+..+.......+
T Consensus 113 D~~t~~~~----~ti~~--------------~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~- 170 (262)
T 3nol_A 113 NIRNLRQV----RSFNY--------------DG--EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEE- 170 (262)
T ss_dssp ETTTCCEE----EEEEC--------------SS--CCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEE-
T ss_pred ECccCcEE----EEEEC--------------CC--CceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCcc-
Confidence 99998755 44443 11 2223345677776654 48899999987 777777665432110
Q ss_pred cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
+.....+.|. +|+..+..-.++.|.+.|.++++
T Consensus 171 ---------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 171 ---------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGK 203 (262)
T ss_dssp ---------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred ---------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence 0011357776 77655555567899999999884
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.42 E-value=7.8e-05 Score=74.87 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=103.0
Q ss_pred eEEEeCCCCCEEEEe-cCC-------------------eEEEEEccCCCceeEEeecCCCCCCC--CCCcEEEEEEecCC
Q 011368 208 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIY 265 (487)
Q Consensus 208 ~~i~~s~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~ 265 (487)
..+++.|+..+++.+ .++ .|..+|.++++.....- ..+...-. .........+..+|
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~-~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ-VTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee-cCCCccccccCCCCcEEEEeccCC
Confidence 456788877788777 655 48899998666555431 11100000 11223333333455
Q ss_pred CC---EEEEEeCCCeEEEEEccCCccccccce---eeccccc----ccCc--c--------ccccccc--cceeEEEEcC
Q 011368 266 CN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----SHGS--K--------SFFTEII--ASISDIKFAN 323 (487)
Q Consensus 266 ~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~h~~----~~~~--~--------~~~~~~~--~~v~~v~~s~ 323 (487)
+ .++.++.+|.+.++|.++++.+..... .+..... .+.. . ..+++.. ..-..++++|
T Consensus 312 -~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp 390 (668)
T 1kv9_A 312 -KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP 390 (668)
T ss_dssp -EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred -cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence 4 688899999999999999986521000 0000000 0000 0 0000000 0012366777
Q ss_pred CCCEEEEE------------------------------------e-CCeEEEEeCCCCCceeeeeecccccccccccccC
Q 011368 324 DGQHLLSR------------------------------------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 366 (487)
Q Consensus 324 ~~~~l~s~------------------------------------~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (487)
+...++.. . +|.|..||+.+ ++.+.........
T Consensus 391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~--------- 460 (668)
T 1kv9_A 391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW--------- 460 (668)
T ss_dssp TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC---------
T ss_pred CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC---------
Confidence 76655431 1 27789999987 7777666543321
Q ss_pred CCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368 367 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 367 ~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 412 (487)
....+...+.++++++.||.++.||.++++. +..++..
T Consensus 461 -------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~-l~~~~~~ 498 (668)
T 1kv9_A 461 -------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEA-LWQFEAQ 498 (668)
T ss_dssp -------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred -------cCceeEeCCCEEEEECCcccchhhhhhcChh-heEecCC
Confidence 1233444677889999999999999999854 4455444
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.39 E-value=6.6e-05 Score=64.32 Aligned_cols=197 Identities=9% Similarity=0.025 Sum_probs=114.7
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.-...+.|. ++.++.+.+.+|.|+++|+.+++..... .
T Consensus 55 ~ftqGL~~~---~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------------------------------------- 92 (268)
T 3nok_A 55 AFTQGLVFH---QGHFFESTGHQGTLRQLSLESAQPVWME-R-------------------------------------- 92 (268)
T ss_dssp CCEEEEEEE---TTEEEEEETTTTEEEECCSSCSSCSEEE-E--------------------------------------
T ss_pred cccceEEEE---CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--------------------------------------
Confidence 345788883 4677777888899999999999866542 1
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
.. ...-..+++.. +++.+.. .++.+.+||.++. +.+..+. ..+.. +.++ +++ ..|+.+
T Consensus 93 -------~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl-~~~~ti~-----~~~eG---wGLt--~Dg-~~L~vS 151 (268)
T 3nok_A 93 -------LG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP-QRERTTR-----YSGEG---WGLC--YWN-GKLVRS 151 (268)
T ss_dssp -------CT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTT-EEEEEEE-----CSSCC---CCEE--EET-TEEEEE
T ss_pred -------CC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcC-cEEEEEe-----CCCce---eEEe--cCC-CEEEEE
Confidence 11 11112344442 3444445 8999999999954 4444432 12221 3333 567 677777
Q ss_pred eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368 273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~ 351 (487)
..++.|.++|..+.+.. ..+.. ...+ ..-..++.+.|. +|+..+... .+.|.+.|.++ ++.+..+
T Consensus 152 dGs~~l~~iDp~T~~v~----~~I~V-~~~g-------~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T-G~V~~~I 217 (268)
T 3nok_A 152 DGGTMLTFHEPDGFALV----GAVQV-KLRG-------QPVELINELECA-NGVIYANIWHSSDVLEIDPAT-GTVVGVI 217 (268)
T ss_dssp CSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT-CBEEEEE
T ss_pred CCCCEEEEEcCCCCeEE----EEEEe-CCCC-------cccccccccEEe-CCEEEEEECCCCeEEEEeCCC-CcEEEEE
Confidence 77899999999987654 33332 0000 001245667777 775444443 48999999997 8888777
Q ss_pred ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368 352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 389 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~ 389 (487)
....-...........+... +.++++|+++.|...+
T Consensus 218 dl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 218 DASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEE
T ss_pred ECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeC
Confidence 65421100000000011111 5899999766555444
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.39 E-value=0.00028 Score=59.94 Aligned_cols=210 Identities=9% Similarity=0.049 Sum_probs=120.1
Q ss_pred cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCC--CcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (487)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
.++.+.++ .|.+. .-...+.|+ ++.++.+.+.+ ..|+.+|+.+++........
T Consensus 8 ~~~v~~~~-phd~~----------~ftqGL~~~---~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----------- 62 (243)
T 3mbr_X 8 GYRVVKRY-PHDTT----------AFTEGLFYL---RGHLYESTGETGRSSVRKVDLETGRILQRAEVP----------- 62 (243)
T ss_dssp CEEEEEEE-ECCTT----------CCEEEEEEE---TTEEEEEECCTTSCEEEEEETTTCCEEEEEECC-----------
T ss_pred ceEEEEEc-CCCCc----------cccccEEEE---CCEEEEECCCCCCceEEEEECCCCCEEEEEeCC-----------
Confidence 44556666 56533 557789994 35666666654 48999999999876653211
Q ss_pred ccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCC
Q 011368 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 246 (487)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 246 (487)
.+ ..-..++.. ++++.+.. .++.+.+||.++. +.+..+.
T Consensus 63 ----------------------------------~~-~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl-~~~~ti~--- 102 (243)
T 3mbr_X 63 ----------------------------------PP-YFGAGIVAW-RDRLIQLTWRNHEGFVYDLATL-TPRARFR--- 102 (243)
T ss_dssp ----------------------------------TT-CCEEEEEEE-TTEEEEEESSSSEEEEEETTTT-EEEEEEE---
T ss_pred ----------------------------------CC-cceeEEEEe-CCEEEEEEeeCCEEEEEECCcC-cEEEEEe---
Confidence 11 011223333 23344445 8999999999854 4444432
Q ss_pred CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368 247 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 326 (487)
Q Consensus 247 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~ 326 (487)
..+. -..++ +++ ..|+.+..++.|.++|..+.+.. ..+.. ...+. --..++.+.+. +|+
T Consensus 103 --~~~~---Gwglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V-~~~g~-------~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 103 --YPGE---GWALT--SDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKV-TAGGR-------PLDNLNELEWV-NGE 161 (243)
T ss_dssp --CSSC---CCEEE--ECS-SCEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------ECCCEEEEEEE-TTE
T ss_pred --CCCC---ceEEe--eCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEE-ccCCc-------ccccceeeEEe-CCE
Confidence 1121 13343 566 56666667889999999987654 33332 00000 01245566665 666
Q ss_pred EEEEE-eCCeEEEEeCCCCCceeeeeeccccccccccc--ccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368 327 HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATGSY 390 (487)
Q Consensus 327 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~d~~~l~sg~~ 390 (487)
..+.. ....|.+.|.++ ++.+..+....-... ... ....+.. +.++++|+++.|...+.
T Consensus 162 lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~-~~~~~~~~~~vl---NGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPAS-GKVVAWIDLQALVPD-ADALTDSTNDVL---NGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTT-CBEEEEEECGGGSTT-TTSCCCTTSSCE---EEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCC-CCEEEEEECCcCccc-cccccCCcCCce---EEEEEcCCCCEEEEECC
Confidence 55444 348999999997 888877765432100 000 0011122 58999998776665554
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.38 E-value=0.00036 Score=60.11 Aligned_cols=218 Identities=11% Similarity=0.137 Sum_probs=123.1
Q ss_pred CcEEEEEEcCCCCEEE-EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee--cCCCcccccccc
Q 011368 33 DIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--QSHEPEFDYLKS 109 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~ 109 (487)
+.+..++++|++..|+ +...++.|...|.. ++. ...+ .+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---------------------------~~~i~l~g~--------- 69 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---------------------------IRTIPLDFV--------- 69 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---------------------------EEEEECSSC---------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---------------------------EEEEecCCC---------
Confidence 4699999999876554 56677777777765 332 1222 221
Q ss_pred cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeE-eeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (487)
Q Consensus 110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (487)
.....|++ .+++.++++.-.++.+.++++....... ......
T Consensus 70 ----~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~------------------------------- 112 (255)
T 3qqz_A 70 ----KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKI------------------------------- 112 (255)
T ss_dssp ----SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEEC-------------------------------
T ss_pred ----CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecc-------------------------------
Confidence 34677888 4677666666677889998886544211 110000
Q ss_pred eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccC--CCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368 189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 265 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 265 (487)
.............++|+|.++.|.++ ......+|.++. ....+.+.+.+...-......+.+++++|..
T Consensus 113 --------~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 113 --------PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp --------CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred --------ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 00002345668999999998777776 444445555441 1122333211000001122346889999987
Q ss_pred CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeC
Q 011368 266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 341 (487)
Q Consensus 266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~ 341 (487)
..+++.+..++.|.++|.... .. ..+..... ..-+..--..-..|+|.++|++.+++.-+.++.+.-
T Consensus 185 g~lliLS~~s~~L~~~d~~g~-~~----~~~~L~~g----~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVGE-VI----GEMSLTKG----SRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp TEEEEEETTTTEEEEECTTCC-EE----EEEECSTT----GGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred CeEEEEECCCCeEEEEcCCCC-EE----EEEEcCCc----cCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 466666667788999997653 22 22221000 000000123568899999999777765476666653
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=5.8e-05 Score=64.68 Aligned_cols=157 Identities=11% Similarity=-0.018 Sum_probs=97.7
Q ss_pred CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368 204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 282 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 282 (487)
......+.|+ ++.++.+. .++.|+.+|+++++....+ +. . ...-..+++ .+..+.+..-.++.+.+||
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~-----~-~~FgeGit~--~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RL-----G-NIFAEGLAS--DGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--EC-----T-TCCEEEEEE--CSSCEEEEESSSCEEEEEE
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CC-----C-CcceeEEEE--eCCEEEEEEccCCEEEEEE
Confidence 3445788887 34555555 8889999999965543332 22 1 111123444 3425555555789999999
Q ss_pred ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368 283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL 361 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 361 (487)
..+.+.+ ..+.. ...-..++ +|++.|+.++ ++.|.++|..+ .+.+..+.......+
T Consensus 123 ~~Tl~~~----~ti~~--------------~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~-- 179 (268)
T 3nok_A 123 GMPPQRE----RTTRY--------------SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQP-- 179 (268)
T ss_dssp TTTTEEE----EEEEC--------------SSCCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEE--
T ss_pred CCcCcEE----EEEeC--------------CCceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcc--
Confidence 9998765 44443 11113333 5677777664 59999999987 777777765443221
Q ss_pred ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
+...+.+.|. +|+..+..-.++.|.+.|.++++
T Consensus 180 --------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 180 --------VELINELECA-NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp --------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred --------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence 1111467777 77655555567899999999884
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.36 E-value=0.00029 Score=71.87 Aligned_cols=158 Identities=12% Similarity=0.154 Sum_probs=89.9
Q ss_pred cEEEEEEc-CCCCEEEEEec-CC----cEEEEEeeCC-cCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368 34 IVSAIEFD-KTGDYLAVGDR-GG----RVILFETVGG-KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (487)
Q Consensus 34 ~V~~~~~s-~~~~~l~~g~~-dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (487)
.+...+|| |||++||.+.. +| +|+++|+.++ +.. ..+-
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------------------------------~~~~----- 219 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------------------------------ADKV----- 219 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------------------------------CCCE-----
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------------------------------Cccc-----
Confidence 57889999 99999886543 23 4999998877 531 0000
Q ss_pred ccccccccceeEEEEEecCCCcEEEEEeCCC-----cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (487)
Q Consensus 107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
+.....++| +|||+.|+....|. .|.++++.++.....
T Consensus 220 ------~~~~~~~~W--spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~----------------------------- 262 (751)
T 2xe4_A 220 ------SGTNGEIVW--GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDV----------------------------- 262 (751)
T ss_dssp ------EEECSCCEE--CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCE-----------------------------
T ss_pred ------cCceeeEEE--ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcE-----------------------------
Confidence 022346789 67888887776542 466666655431100
Q ss_pred cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCcee--EEeecCCCCCCCCCCc
Q 011368 182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCF--NIVDMKPSNMDDLTEV 255 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~ 255 (487)
..+-.........+.|+|||++|+.. ....|+++|+.++.... ..+ .......
T Consensus 263 ---------------lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l------~~~~~~~ 321 (751)
T 2xe4_A 263 ---------------CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV------RPREKGV 321 (751)
T ss_dssp ---------------EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES------SCCCTTC
T ss_pred ---------------EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe------ecCCCCc
Confidence 00101222345678999999988774 24568888887542222 221 1223344
Q ss_pred EEEEEEecCCCCEEEEEeCC--C--eEEEEEccC
Q 011368 256 ITSAEFHPIYCNLLAYSSSR--G--FVRLVDMRQ 285 (487)
Q Consensus 256 v~~v~~~p~~~~~l~~~~~d--g--~i~iwd~~~ 285 (487)
..++.|+..+ .+++....+ + .|..+|+.+
T Consensus 322 ~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 322 RYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTT-EEEEEECTTTCTTCEEEEEETTS
T ss_pred eEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCC
Confidence 5566655443 444444443 2 566666654
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=0.0003 Score=59.74 Aligned_cols=158 Identities=12% Similarity=0.028 Sum_probs=95.7
Q ss_pred CCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEE
Q 011368 204 DFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 280 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 280 (487)
......+.|++ +.++.+. . .+.|+.+|+.+++ ....+.+ ..+. .-..++.. +..+....-.++.+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk-v~~~~~l-----~~~~-fgeGi~~~--~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR-ILQRAEV-----PPPY-FGAGIVAW--RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC-EEEEEEC-----CTTC-CEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC-EEEEEeC-----CCCc-ceeEEEEe--CCEEEEEEeeCCEEEE
Confidence 34466889986 5555554 4 3599999999554 4443322 2211 11234443 3145555556899999
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccc
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP 359 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~ 359 (487)
||..+.+.+ ..+.. ...-..++ ++++.|+.++ ++.|.++|..+ .+.+..+.......+
T Consensus 90 ~D~~tl~~~----~ti~~--------------~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 90 YDLATLTPR----ARFRY--------------PGEGWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRP 148 (243)
T ss_dssp EETTTTEEE----EEEEC--------------SSCCCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEE
T ss_pred EECCcCcEE----EEEeC--------------CCCceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcc
Confidence 999997755 44443 11113443 5666666553 58999999987 777777765432211
Q ss_pred ccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 360 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
+...+.+.+. +|+..+..-.+..|.+.|.++++
T Consensus 149 ----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 149 ----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp ----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred ----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence 1111366666 67655555467799999999984
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.0045 Score=63.61 Aligned_cols=340 Identities=10% Similarity=0.057 Sum_probs=175.6
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (487)
..|.++...++|.+.+. ..+ -+.+||..+++.. .+...... ...+ .
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~----------------------------~~~~~~~~---~~~l-~ 256 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFT----------------------------NFHNNPGN---IHGA-L 256 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEE----------------------------C---------------C
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEE----------------------------EEEcCCCc---cccc-c
Confidence 46899999888876654 444 5888886554321 01000000 0000 0
Q ss_pred ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
...|.++.. ..+|. |..|+..+-|.+++..++............ +
T Consensus 257 ~~~i~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~------------------------------~-- 301 (781)
T 3v9f_A 257 SSYIFSIKQ--LKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEF------------------------------I-- 301 (781)
T ss_dssp CCCEEEEEE--CTTSE-EEEEESSSCEEEEETTCC---------CEE------------------------------E--
T ss_pred CceEEEEEE--CCCCC-EEEEeCCCCeEEECCCCCeeeeeecccccc------------------------------c--
Confidence 156888887 45554 556666456888888776543321100000 0
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCC---CCCCCCCcEEEEEEecCCCCEE
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~p~~~~~l 269 (487)
........-....|.++...++|.+-+...++-|..++.... . +..+...+. .-.-....|.++...++| . |
T Consensus 302 -~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-l 376 (781)
T 3v9f_A 302 -REGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPP-T-FHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-L 376 (781)
T ss_dssp -CBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCC-S-CEEEC----CCCSSCCSSSCEEEEEECTTS-C-E
T ss_pred -cCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCC-c-ceeeccCccccccCCCCCcceEEEEEcCCC-C-E
Confidence 000000012345689999998887666557778888887632 2 222211000 011123569999988887 4 5
Q ss_pred EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee
Q 011368 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~ 349 (487)
..|+.++.|..||..++... .+.. +. ......|.++...++|.+.+...++.|..+|..+ ++ ..
T Consensus 377 Wigt~~~Gl~~~~~~~~~~~-----~~~~----~~-----~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~ 440 (781)
T 3v9f_A 377 WIGTDGGGINVFENGKRVAI-----YNKE----NR-----ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-KK-FQ 440 (781)
T ss_dssp EEEEBSSCEEEEETTEEEEE-----CC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-CE-EE
T ss_pred EEEeCCCcEEEEECCCCeEE-----EccC----CC-----CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-Cc-EE
Confidence 56666666888988764321 1110 00 0113578999988888766644447788898865 33 22
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc-----CCccccceEeeC
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQAA 424 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~ 424 (487)
.+..... ....|.++...++|.+.+ |+. +-|..|+..+++..... ... ...+.++...
T Consensus 441 ~~~~~~~------------~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d-- 503 (781)
T 3v9f_A 441 IIELEKN------------ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHY-DTSNSQLLENFVRSIAQD-- 503 (781)
T ss_dssp ECCSTTT------------CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEE-CTTTSSCSCSCEEEEEEC--
T ss_pred EeccCCC------------CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecc-cCcccccccceeEEEEEc--
Confidence 2221100 001235788888887555 444 56888998876432221 111 1233333322
Q ss_pred Cccccccccceeeecc-cceecCCCCC-cccccc---c-cCCCeEEEEEcCCCCEEEEecCCeE-EEEe
Q 011368 425 PRARRSSLSNLTRGLY-RQAHENSSSG-HHELSY---N-LSSKLLHLAWHPTTNLIACANGNSL-FFHY 486 (487)
Q Consensus 425 ~~~~~~~~~~l~~g~~-~~~~~w~~~~-~~~~~~---~-~~~~v~~~~~spd~~~la~~s~~~~-~i~~ 486 (487)
.++.+ -.|.. .+...+.... ...... + ....|.++...++|.+.+... +++ +.|.
T Consensus 504 ~~g~l------Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 504 SEGRF------WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp TTCCE------EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred CCCCE------EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 24433 33333 3333332211 111111 1 235788999999998766555 777 7764
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.00093 Score=63.11 Aligned_cols=184 Identities=9% Similarity=0.064 Sum_probs=91.3
Q ss_pred ceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE-EEEeCCCeEEEEE
Q 011368 206 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVD 282 (487)
Q Consensus 206 ~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd 282 (487)
....++++| ++.++++- .++.|..++... .....+.. ... ......++|+|+| ++| ++-...+.|..++
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~-----~~~-~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~ 298 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFT-----IQD-SGWEFHIQFHPSG-NYAYIVVVNQHYILRSD 298 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEE-----CSS-SSCCEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEE-----cCC-CCcceeEEEcCCC-CEEEEEECCCCEEEEEe
Confidence 356788999 67766666 888999999873 33212211 111 2346789999999 744 4445678899988
Q ss_pred ccCCccccccceeecccccccCccc-c-cccccccee-EEEEc--------CCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368 283 MRQSALCDHSARILRDAAESHGSKS-F-FTEIIASIS-DIKFA--------NDGQHLLSRD-YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~~~~~~-~-~~~~~~~v~-~v~~s--------~~~~~l~s~~-d~~i~iwd~~~~~~~~~~ 350 (487)
.............+.+......... . ....-.... .++.. ++|.+.++-. .+.|+.++.. +. +..
T Consensus 299 ~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~--G~-v~~ 375 (430)
T 3tc9_A 299 YDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ--GR-VTT 375 (430)
T ss_dssp EETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT--SE-EEE
T ss_pred CCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC--Cc-EEE
Confidence 7642100001122222000000000 0 000011223 45553 3354444433 3788888842 43 333
Q ss_pred eecccc-ccccccc--ccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeC
Q 011368 351 FKIHEH-LRPKLCD--LYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 351 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~ 400 (487)
+.+... ......+ ............++++| ++.++++-..++.|+.++++
T Consensus 376 ~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 376 FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 322200 0000000 00000112236899999 46666666677888888764
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.30 E-value=0.00024 Score=69.81 Aligned_cols=61 Identities=8% Similarity=-0.026 Sum_probs=39.6
Q ss_pred CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 412 (487)
+.|..||+.+ ++.+..+....... ...+...+..++.++.||.|+.+|.++++. +..++..
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~~----------------~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~-lw~~~~~ 504 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAAW----------------GGTLYTKGGLVWYATLDGYLKALDNKDGKE-LWNFKMP 504 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCCC----------------SBCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred CeEEEEECCC-CCEEEEecCCCCcc----------------ceeEEECCCEEEEEcCCCeEEEEECCCCCE-EEEEeCC
Confidence 6788888886 66666655332211 222223456777899999999999999855 4444433
No 264
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.26 E-value=0.0015 Score=61.62 Aligned_cols=184 Identities=10% Similarity=0.036 Sum_probs=95.2
Q ss_pred CceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE-EeCCCeEEEE
Q 011368 205 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLV 281 (487)
Q Consensus 205 ~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~iw 281 (487)
.....++++| ++.++++- .++.|+.++..++.....+... +.......++|+|++ +.|+. -...+.|+.+
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~------~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~ 300 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM------DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV 300 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC------SCCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc------CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence 3456788999 67666666 7889999988733321222211 111223579999999 74544 4557889998
Q ss_pred EccC--CccccccceeecccccccCccc--cccccccceeEEEE---------cCCCCEEEEEeC-CeEEEEeCCCCCce
Q 011368 282 DMRQ--SALCDHSARILRDAAESHGSKS--FFTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP 347 (487)
Q Consensus 282 d~~~--~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~v~~v~~---------s~~~~~l~s~~d-~~i~iwd~~~~~~~ 347 (487)
+... +... ....+.+......... .....-.....+++ .++|.++++-.. +.|+.++.. + .
T Consensus 301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~ 375 (433)
T 4hw6_A 301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-R 375 (433)
T ss_dssp EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-E
T ss_pred eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-C
Confidence 8763 2211 0112222000000000 00001124567888 666665555433 889998852 4 3
Q ss_pred eeeeeccccc-cccccc--ccCCCCcceeeEEEEc-CCCCEEEEEcCCCcEEEEEeC
Q 011368 348 VATFKIHEHL-RPKLCD--LYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG 400 (487)
Q Consensus 348 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~s-~d~~~l~sg~~dg~i~iwd~~ 400 (487)
+..+.+.... .....+ ............++++ ++|.++++-..++.|+.++++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3333322110 000000 0000111223689999 677777766777888888764
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.19 E-value=0.0012 Score=59.72 Aligned_cols=215 Identities=9% Similarity=0.016 Sum_probs=117.8
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
...+++| .+++.++.++..++.|..|+..++............ .. ..+. . .
T Consensus 20 ~p~~i~~--d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~------------~~-~~~~-g-------------~ 70 (322)
T 2fp8_A 20 APNSFTF--DSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYW------------NK-AFCE-N-------------S 70 (322)
T ss_dssp CCCCEEC--CTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTC------------CH-HHHT-T-------------C
T ss_pred CceEEEE--cCCCCEEEEEcCCCeEEEECCCCCceEEEecccccc------------cc-cccc-c-------------c
Confidence 3566888 567887888888899999988766543321100000 00 0000 0 0
Q ss_pred eeeeecccCCCceeEEEeCC-CCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEec-CCCCEEEE
Q 011368 195 ATKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHP-IYCNLLAY 271 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p-~~~~~l~~ 271 (487)
.... ..........+++.+ +++++++...+.|..+|... +. ++.+.. ...+ .......+++.+ +| .+.++
T Consensus 71 ~~~~-~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~-g~-~~~~~~---~~~~~~~~~p~~i~~d~~~G-~l~v~ 143 (322)
T 2fp8_A 71 TDAE-KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEG-GH-ATQLAT---SVDGVPFKWLYAVTVDQRTG-IVYFT 143 (322)
T ss_dssp CCGG-GHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTC-EE-CEEEES---EETTEECSCEEEEEECTTTC-CEEEE
T ss_pred cchh-ccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCC-CE-EEEecc---cCCCCcccccceEEEecCCC-EEEEE
Confidence 0000 001123478899997 66555554555588888662 22 222100 0111 123468899999 88 76666
Q ss_pred EeC-----------------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--
Q 011368 272 SSS-----------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 332 (487)
Q Consensus 272 ~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-- 332 (487)
... ++.|..+|..+++.. ..... -.....++++|+|+.|..++
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~----~~~~~--------------~~~p~gia~~~dg~~lyv~d~~ 205 (322)
T 2fp8_A 144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT----LLLKE--------------LHVPGGAEVSADSSFVLVAEFL 205 (322)
T ss_dssp ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE----EEEEE--------------ESCCCEEEECTTSSEEEEEEGG
T ss_pred CCcccccccccceehcccCCCceEEEEeCCCCEEE----EeccC--------------CccCcceEECCCCCEEEEEeCC
Confidence 432 367888887665421 11111 12456799999999777664
Q ss_pred CCeEEEEeCCCCC-ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC----------CCcEEEEEe
Q 011368 333 YMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIFSH 399 (487)
Q Consensus 333 d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~----------dg~i~iwd~ 399 (487)
.+.|.+|++.... .....+.....+ ..++++++|++.++... .+.|..+|.
T Consensus 206 ~~~I~~~~~~~~~~~~~~~~~~~~gP----------------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 206 SHQIVKYWLEGPKKGTAEVLVKIPNP----------------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp GTEEEEEESSSTTTTCEEEEEECSSE----------------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred CCeEEEEECCCCcCCccceEEeCCCC----------------CCeEECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence 3899999986411 111111111111 47999999987666544 355666665
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.15 E-value=0.00029 Score=71.93 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=73.4
Q ss_pred cCCC-ceeEEEeC-CCCCEEEEe-c-CC----eEEEEEccCC-CceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368 202 AHDF-NINSISNN-SDCETFVSA-D-DL----RINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 272 (487)
Q Consensus 202 ~~~~-~v~~i~~s-~~~~~l~s~-~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 272 (487)
+|.. .+...+|| |||++|+.+ . +| .|+++|+.++ .... ..+. .....++|+|+| +.|+..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------~~~~---~~~~~~~WspDg-~~l~y~ 238 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------DKVS---GTNGEIVWGPDH-TSLFYV 238 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------CCEE---EECSCCEECSST-TEEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------cccc---CceeeEEEecCC-CEEEEE
Confidence 3443 67889999 999999875 2 33 4999999855 3111 0111 112467899999 777776
Q ss_pred eCC-----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----CCeEEEEeCCC
Q 011368 273 SSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRM 343 (487)
Q Consensus 273 ~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d~~i~iwd~~~ 343 (487)
..+ ..|.++++.++.... ..++.. ........+.|+|||++|+... ...|+++|+..
T Consensus 239 ~~d~~~~~~~v~~~~lgt~~~~~--~lv~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 239 TKDETLRENKVWRHVMGKLQSED--VCLYEE------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EECTTCCEEEEEEEETTSCGGGC--EEEEEC------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EECCCCCCCEEEEEECCCCchhc--EEEEec------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 654 257777776653211 122221 0123456789999999988643 26788899875
No 267
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.14 E-value=0.0016 Score=65.42 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=48.3
Q ss_pred EEEEecCCCCEEEEEeCCC-------------------eEEEEEccCCccccccceeecccccccCccccccccccceeE
Q 011368 258 SAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 318 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 318 (487)
.++++|.. ..++.++.++ .|.-+|.++++.. -.++. . +.....+. ...+...
T Consensus 234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~----W~~~~--~-~~~~wd~~-~~~~~~~ 304 (668)
T 1kv9_A 234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA----WHYQV--T-PGDSWDFT-ATQQITL 304 (668)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE----EEEES--S-TTCCSCCC-CCSCEEE
T ss_pred ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee----eEeec--C-CCcccccc-CCCCcEE
Confidence 47888887 7888887766 3889999998743 22221 0 00000000 0112222
Q ss_pred EEEcCCCC---EEEEEe-CCeEEEEeCCCCCceeeee
Q 011368 319 IKFANDGQ---HLLSRD-YMNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 319 v~~s~~~~---~l~s~~-d~~i~iwd~~~~~~~~~~~ 351 (487)
..+..+|+ .++.++ +|.++++|..+ ++.+...
T Consensus 305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~ 340 (668)
T 1kv9_A 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAE 340 (668)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEE
T ss_pred EEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccc
Confidence 22333665 566665 59999999987 7776443
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=0.00063 Score=68.33 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=24.7
Q ss_pred eEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEe
Q 011368 117 NRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKI 152 (487)
Q Consensus 117 ~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~ 152 (487)
.++++ ..++++++.|+ .+..+.+||..+++....
T Consensus 246 ~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~ 280 (656)
T 1k3i_A 246 PGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPG 280 (656)
T ss_dssp CEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEEC
T ss_pred ccccC--CCCCCEEEeCCCCCCceEEecCcCCceeEC
Confidence 34555 46888888887 456899999988765543
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.07 E-value=0.0011 Score=65.21 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368 381 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412 (487)
Q Consensus 381 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 412 (487)
.+..++.++.||.++.||.++|+. +..++..
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~-lW~~~l~ 513 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDL-LWKFKIP 513 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred cCCEEEEECCCCeEEEEECCCCCE-EEEeeCC
Confidence 566777899999999999999965 4444443
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.05 E-value=0.0016 Score=65.42 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=48.5
Q ss_pred CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-CC-----C
Q 011368 205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-----G 276 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-----g 276 (487)
....++++..++++++.| .+..+.+||..+. ....+ ..+...... .+++..+++ ++++.|+ .+ .
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~----~~~~~~R~~-~s~~~~~dg-~iyv~GG~~~~~~~~~ 314 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPG----PDMQVARGY-QSSATMSDG-RVFTIGGSWSGGVFEK 314 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT--EEEEC----CCCSSCCSS-CEEEECTTS-CEEEECCCCCSSSCCC
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCC--ceeEC----CCCCccccc-cceEEecCC-eEEEEeCcccCCcccc
Confidence 334457788899999997 5678999999843 22221 112221111 345566788 8888888 34 4
Q ss_pred eEEEEEccCCc
Q 011368 277 FVRLVDMRQSA 287 (487)
Q Consensus 277 ~i~iwd~~~~~ 287 (487)
.+.+||..+++
T Consensus 315 ~~e~yd~~t~~ 325 (656)
T 1k3i_A 315 NGEVYSPSSKT 325 (656)
T ss_dssp CEEEEETTTTE
T ss_pred cceEeCCCCCc
Confidence 68999998764
No 271
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.01 E-value=0.0015 Score=64.21 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=40.3
Q ss_pred CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368 334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 413 (487)
Q Consensus 334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 413 (487)
|.|..||+.+ ++.+.......... .-.....+.+++.|+.||.++.||.++|+. +..++...
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~~----------------~g~~~tagglvf~g~~dg~l~A~D~~tG~~-lW~~~~~~ 527 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPLW----------------AGVLATAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGS 527 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCCC----------------SCCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSS
T ss_pred ceEEEEECCC-CCEEEEecCCCCCc----------------ccceEeCCCEEEEECCCCcEEEEECCCCCE-EEEecCCC
Confidence 7788899887 77666655332110 111112466788899999999999999955 44555443
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.96 E-value=0.012 Score=55.46 Aligned_cols=210 Identities=10% Similarity=-0.012 Sum_probs=112.7
Q ss_pred ceeEEEEEecCC--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368 115 KINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (487)
Q Consensus 115 ~I~~v~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (487)
....|+|. ++ +..|..+...+.|+.++..++....+
T Consensus 140 ~P~gvavd--~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~---------------------------------------- 177 (433)
T 4hw6_A 140 NIWRMMFD--PNSNYDDLYWVGQRDAFRHVDFVNQYVDIK---------------------------------------- 177 (433)
T ss_dssp CCCEEEEC--TTTTTCEEEEECBTSCEEEEETTTTEEEEE----------------------------------------
T ss_pred CCceEEEc--cccCCCEEEEEeCCCCEEEEECCCCEEEEe----------------------------------------
Confidence 45688884 42 33444443338888888877765443
Q ss_pred cceeeeecccCCCceeEEEeCCCCCEEEEecCC-----eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-CCC
Q 011368 193 NMATKVYPHAHDFNINSISNNSDCETFVSADDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYC 266 (487)
Q Consensus 193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~ 266 (487)
.........++++++|+++++...+ .+...+..........+ . .......++++| ++
T Consensus 178 --------~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-------~-~~~~P~giavd~~~G- 240 (433)
T 4hw6_A 178 --------TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL-------C-NARGAKTCAVHPQNG- 240 (433)
T ss_dssp --------CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE-------E-ECSSBCCCEECTTTC-
T ss_pred --------ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc-------c-ccCCCCEEEEeCCCC-
Confidence 2234457899999999955554321 23333332111100110 1 123346688999 66
Q ss_pred CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368 267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD 344 (487)
Q Consensus 267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~ 344 (487)
.++++-..++.|+.+|..++.... ..+.. .. ...-..++|+|+|++|..++ .+.|+.++....
T Consensus 241 ~lyv~d~~~~~V~~~d~~~g~~~~---~~~~~-~~-----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 241 KIYYTRYHHAMISSYDPATGTLTE---EEVMM-DT-----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE 305 (433)
T ss_dssp CEEECBTTCSEEEEECTTTCCEEE---EEEEC-SC-----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred eEEEEECCCCEEEEEECCCCeEEE---EEecc-CC-----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 666566667889999988665310 11111 00 12234699999999776664 388999887531
Q ss_pred Cce---eeeeecccccccccccc-cCCCCcceeeEEEE---------cCCCCEEEEEcCCCcEEEEEe
Q 011368 345 STP---VATFKIHEHLRPKLCDL-YNNDSIFDKFECSV---------SGDGLHFATGSYSNLLRIFSH 399 (487)
Q Consensus 345 ~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------s~d~~~l~sg~~dg~i~iwd~ 399 (487)
... ...+.+..... ...+- ...........+++ .++|.+.++-..++.|+.++.
T Consensus 306 ~~~~~~~~~~ag~~g~~-g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 306 TGKLAVPYIVCGQHSSP-GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TCCBCCCEEEEECTTCC-CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CcccCcEEEEEecCCCC-ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 111 11222210000 00000 00001112257898 677777777777788888874
No 273
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.012 Score=55.83 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=93.4
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
....|+|.|..++.++++....+.|++.|..++.+..+....
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-------------------------------------- 181 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-------------------------------------- 181 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT--------------------------------------
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC--------------------------------------
Confidence 456888853112444444444567888888877665442100
Q ss_pred eeeeecccCCCceeEEEe-------CCCCCEEEEe-cCC-------eEEEEEccCCCcee-----EEeecCCCCCCCCCC
Q 011368 195 ATKVYPHAHDFNINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTE 254 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~-------s~~~~~l~s~-~d~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~ 254 (487)
.........++| +++++.|+++ ..+ .|.+.+....+... ..+ ... .
T Consensus 182 ------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~~-~ 247 (496)
T 3kya_A 182 ------TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AAY-K 247 (496)
T ss_dssp ------TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EEE-S
T ss_pred ------ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------ccC-C
Confidence 112345789999 9999966665 332 26666544312211 111 111 1
Q ss_pred cEEEEEEecCCCCEEEEEeCCCeEEEEEcc-------CCccccc--------cceeecccccccCccccccccccceeEE
Q 011368 255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMR-------QSALCDH--------SARILRDAAESHGSKSFFTEIIASISDI 319 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~--------~~~~~~~h~~~~~~~~~~~~~~~~v~~v 319 (487)
....++++|++..++++-..++.|..+|+. ++..... ....+.. +.......|
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~------------~~~~~p~~i 315 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI------------ADPSWEFQI 315 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC------------SSSSCCEEE
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec------------CCCCCceEE
Confidence 235678899552666666678899999998 5442000 0011111 012346789
Q ss_pred EEcCCCCEEEEEe--CCeEEEEeCC
Q 011368 320 KFANDGQHLLSRD--YMNLKLWDIR 342 (487)
Q Consensus 320 ~~s~~~~~l~s~~--d~~i~iwd~~ 342 (487)
+|+|+|++|..++ ...|+.++..
T Consensus 316 a~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 316 FIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEcCCCCEEEEEeCCCCEEEEEecC
Confidence 9999999766664 3888887654
No 274
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.95 E-value=0.0049 Score=55.26 Aligned_cols=159 Identities=8% Similarity=0.053 Sum_probs=90.2
Q ss_pred CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE--ecCCCC-EEEEEeCCCeEEEEEcc---CCccccccceeec
Q 011368 224 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMR---QSALCDHSARILR 297 (487)
Q Consensus 224 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~-~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~ 297 (487)
+++|.+|++......+..+......+..-...++.+++ +|.+.. ++++...+|.+..|++. .+....+.++.|.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68999998852222333321000000011144566676 674313 67778889999999884 3333333446666
Q ss_pred ccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC----CceeeeeecccccccccccccCCCCcce
Q 011368 298 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFD 372 (487)
Q Consensus 298 ~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (487)
. .+.+..|...+....|+.+. +..|..++.+.. ...+..+.. .. ...+
T Consensus 178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~------------l~aD 230 (355)
T 3amr_A 178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RH------------LTRD 230 (355)
T ss_dssp C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SS------------BCSC
T ss_pred C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-Cc------------cccC
Confidence 5 35788999999888888886 445777775421 223333321 11 1112
Q ss_pred eeEEEE--cCCCC-EEEEEc-CCCcEEEEEeCCCCceeEEE
Q 011368 373 KFECSV--SGDGL-HFATGS-YSNLLRIFSHGVGSAGGITV 409 (487)
Q Consensus 373 ~~~~~~--s~d~~-~l~sg~-~dg~i~iwd~~~~~~~~~~~ 409 (487)
+-.|++ .++++ +|++.+ .+++..+||.+........+
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 346766 45666 666665 56799999997332334444
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.91 E-value=0.015 Score=54.22 Aligned_cols=161 Identities=9% Similarity=0.007 Sum_probs=96.6
Q ss_pred CCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC--CCeE
Q 011368 203 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFV 278 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i 278 (487)
.......+++.+.+..|+.+ ..+.|.+.+++ +.....++ .........++++|.+ ..|+.... .+.|
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~-------~~~~~~P~~iavdp~~-g~ly~td~~~~~~I 227 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI 227 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEE-------ECSSCCEEEEEEETTT-TEEEEEECSSSCCE
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEEE-------eCCCCCcceEEEeccc-CeEEEEeCCCCCEE
Confidence 34456788888755555544 77899999887 33333222 1223347899999976 55555542 3678
Q ss_pred EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeee-eccc
Q 011368 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATF-KIHE 355 (487)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~-~~~~ 355 (487)
...++...... ..... .-.....|++++++..|..++ .+.|..+|+.. .....+ ....
T Consensus 228 ~~~~~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~~~ 288 (400)
T 3p5b_L 228 KKGGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEK 288 (400)
T ss_dssp EEEETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCCEEEEECSS
T ss_pred EEEeCCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--CccEEEEeCCC
Confidence 88887654321 11111 024678999999888888775 38899999863 333333 2111
Q ss_pred ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368 356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 405 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~ 405 (487)
... ...++++. .+..+.+-...+.|..++..+++..
T Consensus 289 ~l~-------------~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 289 RLA-------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp TTS-------------SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CCC-------------CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 100 01367764 3445556667788999997777543
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.88 E-value=0.0087 Score=55.56 Aligned_cols=206 Identities=8% Similarity=-0.006 Sum_probs=115.5
Q ss_pred cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
...+..++|++.+..|+... ..+.|..++.++... ...+....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---------------------------~~~~~~~~--------- 158 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---------------------------EEVVSTGL--------- 158 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---------------------------EEEECSSC---------
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---------------------------EEEEeCCC---------
Confidence 34577899998666555544 567788888765432 01111111
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
.....+++.+ ..+.++++-...+.|.+.+++......+
T Consensus 159 ---~~p~glavd~-~~g~lY~~d~~~~~I~~~~~dg~~~~~l-------------------------------------- 196 (386)
T 3v65_B 159 ---ESPGGLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVL-------------------------------------- 196 (386)
T ss_dssp ---SCCCCEEEET-TTTEEEEEETTTTEEEECBTTSCSCEEE--------------------------------------
T ss_pred ---CCccEEEEEe-CCCeEEEEcCCCCeEEEEeCCCCceEEe--------------------------------------
Confidence 2345677742 2445555556667788777765432221
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+.........+++.|.+..|+.+ .. +.|...+++. .....++ ...-.....|+++|++ .
T Consensus 197 ---------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~-------~~~~~~PnGlavd~~~-~ 258 (386)
T 3v65_B 197 ---------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIA-------DTHLFWPNGLTIDYAG-R 258 (386)
T ss_dssp ---------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEE-------CSSCSCEEEEEEEGGG-T
T ss_pred ---------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CCcEEEE-------ECCCCCeeeEEEeCCC-C
Confidence 12233456889999876666665 44 7788888773 3222221 1223346899999876 4
Q ss_pred EEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 268 LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 268 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
.|+.+ +..+.|..+|+...... ..+.. .......+++. .+.++++-. .+.|..++..+ +
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~----~~~~~-------------~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~-G 319 (386)
T 3v65_B 259 RMYWVDAKHHVIERANLDGSHRK----AVISQ-------------GLPHPFAITVF-EDSLYWTDWHTKSINSANKFT-G 319 (386)
T ss_dssp EEEEEETTTTEEEEECTTSCSCE----EEECS-------------SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-C
T ss_pred EEEEEECCCCEEEEEeCCCCeeE----EEEEC-------------CCCCceEEEEE-CCEEEEeeCCCCeEEEEECCC-C
Confidence 45444 45678999988653211 12221 01345677773 333333332 38888888554 5
Q ss_pred ceeeeee
Q 011368 346 TPVATFK 352 (487)
Q Consensus 346 ~~~~~~~ 352 (487)
..+..+.
T Consensus 320 ~~~~~i~ 326 (386)
T 3v65_B 320 KNQEIIR 326 (386)
T ss_dssp CSCEEEE
T ss_pred cceEEEc
Confidence 5444443
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.87 E-value=0.014 Score=52.47 Aligned_cols=158 Identities=10% Similarity=0.013 Sum_probs=95.1
Q ss_pred CceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-C-CeEEE
Q 011368 205 FNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRL 280 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-d-g~i~i 280 (487)
.....+++.+.+..|+ +- ..+.|.+.+.+ +.....++ .........++++|.+ ..|+.+.. . +.|..
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~ 147 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK 147 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCC-CEEEEEccCCCCeEEE
Confidence 3457888886555554 44 78899999987 33332222 1122456899999976 45544443 3 67888
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCceeeeeec-cccc
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI-HEHL 357 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~~~~-~~~~ 357 (487)
.++..... +.+.. ..-.....++++|++..|..++. +.|..+|+.. .....+.. ....
T Consensus 148 ~~~dG~~~-----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~~~~ 208 (316)
T 1ijq_A 148 GGLNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRL 208 (316)
T ss_dssp EETTSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECTTTT
T ss_pred EcCCCCCe-----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecCCcc
Confidence 88764321 22211 00245789999998888877653 8999999863 32333321 1110
Q ss_pred ccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
. ....+++. ++..+++-...+.|..++..+++.
T Consensus 209 ~-------------~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 209 A-------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp S-------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred C-------------CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 0 01377775 455556666778999999877754
No 278
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.86 E-value=0.012 Score=57.76 Aligned_cols=26 Identities=4% Similarity=0.060 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCcEEEEEccccceeEe
Q 011368 127 GSMFILSTNDKTIKLWKVRDQKVKKI 152 (487)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~ 152 (487)
+..++.++.|+.+..+|..+++....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 45778888899999999999987654
No 279
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.84 E-value=0.049 Score=57.90 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=27.1
Q ss_pred cCcEEEEEEcCC------CCEEEEEec-CCcEEEEEeeCC
Q 011368 32 VDIVSAIEFDKT------GDYLAVGDR-GGRVILFETVGG 64 (487)
Q Consensus 32 ~~~V~~~~~s~~------~~~l~~g~~-dg~i~iw~~~~~ 64 (487)
...|.|+++.|. ++++|.|.. |++|+|+++++.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 457999999863 379999995 999999998754
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.82 E-value=0.019 Score=52.47 Aligned_cols=203 Identities=9% Similarity=0.002 Sum_probs=115.5
Q ss_pred CcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+..++|++.+..|.... ..+.|..++.++.... ..+....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------------------~~~~~~~---------- 115 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------------------EVVSTGL---------- 115 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCce---------------------------EEEeCCC----------
Confidence 3467899997666665554 5677888887655321 1111111
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.....+++.+ .++.++++-...+.|.+.++++.....+
T Consensus 116 --~~p~glavd~-~~g~ly~~d~~~~~I~~~~~dG~~~~~l--------------------------------------- 153 (349)
T 3v64_C 116 --ESPGGLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVL--------------------------------------- 153 (349)
T ss_dssp --SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE---------------------------------------
T ss_pred --CCccEEEEec-CCCeEEEEcCCCCeEEEEcCCCCceEEE---------------------------------------
Confidence 3356778742 2455556666678888888875432221
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
..........+++.|.+..|+.+ .. +.|...+++. .....+ ....-.....++++|++ ..
T Consensus 154 --------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~-------~~~~~~~PnGla~d~~~-~~ 216 (349)
T 3v64_C 154 --------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRII-------ADTHLFWPNGLTIDYAG-RR 216 (349)
T ss_dssp --------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEES-------CCSSCSCEEEEEEETTT-TE
T ss_pred --------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEE-------EECCCCCcceEEEeCCC-CE
Confidence 12233456889999866666555 44 7888888773 222211 11223457899999876 55
Q ss_pred EEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368 269 LAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS 345 (487)
Q Consensus 269 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~ 345 (487)
|+.+ ...+.|..+|+...... ..+.. .......+++. .+ .|..++ .+.|..++..+ +
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~~----~~~~~-------------~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~-G 276 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHRK----AVISQ-------------GLPHPFAITVF-ED-SLYWTDWHTKSINSANKFT-G 276 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCE----EEECS-------------SCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT-C
T ss_pred EEEEECCCCEEEEEeCCCCceE----EEEeC-------------CCCCceEEEEE-CC-EEEEecCCCCeEEEEEccC-C
Confidence 5544 45678999998753211 11211 01345677773 33 444443 37888887544 4
Q ss_pred ceeeee
Q 011368 346 TPVATF 351 (487)
Q Consensus 346 ~~~~~~ 351 (487)
+.+..+
T Consensus 277 ~~~~~i 282 (349)
T 3v64_C 277 KNQEII 282 (349)
T ss_dssp CSCEEE
T ss_pred CccEEe
Confidence 444443
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.78 E-value=0.045 Score=55.64 Aligned_cols=163 Identities=8% Similarity=0.001 Sum_probs=97.4
Q ss_pred CCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-C-CeE
Q 011368 203 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFV 278 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-d-g~i 278 (487)
.......|++.+.++.|+.+ ..+.|.+.+++ +.....++ .........|+++|.+ ..|+.+.. . +.|
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l~-------~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI 539 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEE
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEEE-------eCCCCCcceEEEecCC-CCEEEecCCCCCeE
Confidence 34456788888877666665 78899999988 33333222 1223457899999986 45555543 3 678
Q ss_pred EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCceeeeeecccc
Q 011368 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEH 356 (487)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~~~~~~~ 356 (487)
...++...... ..... .-.....|++.+.+..|+.++. +.|...++.. ......+.....
T Consensus 540 ~~~~~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~ 601 (791)
T 3m0c_C 540 KKGGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKR 601 (791)
T ss_dssp EEEETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTT
T ss_pred EEEecCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCc
Confidence 88888754321 11211 0246789999988887777653 7899999863 322222222111
Q ss_pred cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 406 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~ 406 (487)
.. ...+|++.. +.++++-...+.|...+..+++...
T Consensus 602 l~-------------~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 602 LA-------------HPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp TS-------------SEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred cC-------------CCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceE
Confidence 10 013666643 3444455566888888877775543
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=0.03 Score=53.18 Aligned_cols=186 Identities=8% Similarity=0.008 Sum_probs=93.9
Q ss_pred eeEEEeCCC-CCEEEEe-cCCeEEEEEcc-------CCCc------e----e-EEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 207 INSISNNSD-CETFVSA-DDLRINLWNLE-------ISDQ------C----F-NIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 207 v~~i~~s~~-~~~l~s~-~d~~i~iwd~~-------~~~~------~----~-~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
...++.+|+ +.++++- .++.|..+|+. ++.. . . .+. .. +.....+.++|+|+|
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-----~~-~~~~~p~~ia~~p~G- 321 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-----TI-ADPSWEFQIFIHPTG- 321 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-----EC-SSSSCCEEEEECTTS-
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE-----ec-CCCCCceEEEEcCCC-
Confidence 457788995 4445555 88899999987 3322 0 1 111 11 122345899999999
Q ss_pred CEEEEE-eCCCeEEEEEccCCccccccceeecccccccCcc-cc-cccccccee-EEEEc-------CCCCEEEEEe-CC
Q 011368 267 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-SF-FTEIIASIS-DIKFA-------NDGQHLLSRD-YM 334 (487)
Q Consensus 267 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-~~-~~~~~~~v~-~v~~s-------~~~~~l~s~~-d~ 334 (487)
+.|+.+ +....|+.++.............+-+........ .. ....-.... .++.. ++|.++++-. ..
T Consensus 322 ~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~ 401 (496)
T 3kya_A 322 KYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF 401 (496)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGT
T ss_pred CEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCC
Confidence 754444 5577898876643210000001222200000000 00 000011233 44444 4455444433 38
Q ss_pred eEEEEeCCCCCceeeeeecccccc---c----cccc--ccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCC
Q 011368 335 NLKLWDIRMDSTPVATFKIHEHLR---P----KLCD--LYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~~---~----~~~~--~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.|+.++. . + .+.++.+..... + ...+ ............++++++ |.++++=..++.|+.++++..
T Consensus 402 rIr~i~~-~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 402 CVRKVTP-E-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEEECT-T-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEEEEeC-C-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 9999984 2 4 455554431100 0 0000 000111223468999996 777777777889999998754
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.74 E-value=0.024 Score=51.23 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=81.8
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368 205 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 284 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 284 (487)
..+..+.+.++++.++++.++.| |.....+.....+. ......+..+.+.|++ .+++++...+..+-.|-
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~------~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~- 191 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALV------QEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEP- 191 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEE------CSCCCCEEEEEECTTS-CEEEEETTSSEEEEECT-
T ss_pred CCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEee------cCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCC-
Confidence 34667777666777766655544 33333455454431 2334568899999987 77766644433333332
Q ss_pred CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccc
Q 011368 285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
.+... ..... .....+..+.+.+++..++.+.+|.+++.+... +..-..+......
T Consensus 192 gG~tW----~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW~~~~~~~~~------- 247 (327)
T 2xbg_A 192 GQTAW----EPHNR------------TTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRR------- 247 (327)
T ss_dssp TCSSC----EEEEC------------CSSSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEECCCBCTTSS-------
T ss_pred CCCce----eECCC------------CCCCccceeEECCCCCEEEEeCCceEEEecCCC-CCeeEeccCCccc-------
Confidence 12211 11111 113468889999999888777778887764221 2222222111000
Q ss_pred cCCCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368 365 YNNDSIFDKFECSVSGDGLHFATGSYSNLL 394 (487)
Q Consensus 365 ~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i 394 (487)
.. ..+..+.+.+++..++++. +|.|
T Consensus 248 -~~---~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 248 -NS---VGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp -CC---SCEEEEEESSSSCEEEEES-TTCE
T ss_pred -CC---cceEEEEecCCCEEEEEeC-CCeE
Confidence 00 0125888988887776655 5655
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.71 E-value=0.025 Score=50.76 Aligned_cols=200 Identities=11% Similarity=0.052 Sum_probs=118.2
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+..+.|.+ .++.++.+-...+.|..++..++......
T Consensus 35 ~~~~~ld~d~-~~~~lyw~D~~~~~I~r~~~~g~~~~~~~---------------------------------------- 73 (318)
T 3sov_A 35 EDAAAVDFVF-SHGLIYWSDVSEEAIKRTEFNKTESVQNV---------------------------------------- 73 (318)
T ss_dssp EEEEEEEEEG-GGTEEEEEETTTTEEEEEETTSSSCCCEE----------------------------------------
T ss_pred CccEEEEEEe-CCCEEEEEECCCCcEEEEEccCCCceEEE----------------------------------------
Confidence 3467888963 34555555567788888888765321100
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
+.........+++.+.+..|+.+ ..+.|.+++++. .....++ .........++++|.+ ..|+.
T Consensus 74 ------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~-------~~~~~~P~giavdp~~-g~ly~ 138 (318)
T 3sov_A 74 ------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLF-------WQELDQPRAIALDPSS-GFMYW 138 (318)
T ss_dssp ------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE-------CSSCSSEEEEEEEGGG-TEEEE
T ss_pred ------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEE-------eCCCCCccEEEEeCCC-CEEEE
Confidence 01122345678888755555444 778999999873 3222221 1223456899999976 45555
Q ss_pred Ee--CCCeEEEEEccCCccccccceee-cccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCCc
Q 011368 272 SS--SRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDST 346 (487)
Q Consensus 272 ~~--~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~~ 346 (487)
+. ..+.|...++..... +.+ .. .-.....++++|++..|..++ . +.|..+|+.. .
T Consensus 139 td~~~~~~I~r~~~dG~~~-----~~~~~~-------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--~ 198 (318)
T 3sov_A 139 TDWGEVPKIERAGMDGSSR-----FIIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--T 198 (318)
T ss_dssp EECSSSCEEEEEETTSCSC-----EEEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--C
T ss_pred EecCCCCEEEEEEcCCCCe-----EEEEEC-------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--C
Confidence 54 257888888764321 121 11 023568999999888777765 3 8999999863 2
Q ss_pred eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
....+...... ....+++.. +..+.+-...+.|..++..+++.
T Consensus 199 ~~~~~~~~~~~--------------~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 199 NRQAVVKGSLP--------------HPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCEEEECSCCS--------------CEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred ceEEEecCCCC--------------CceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 22222211110 013677753 34555666778899999877754
No 285
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.65 E-value=0.033 Score=54.76 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=46.7
Q ss_pred EEEEecCCCCEEEEEeCC----------------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368 258 SAEFHPIYCNLLAYSSSR----------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 321 (487)
Q Consensus 258 ~v~~~p~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~ 321 (487)
.+++.+.. .+++.+..+ +.|.-+|.++++.. -.++.. +....-+.....++. +..
T Consensus 245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~----W~~q~~---~~d~wd~d~~~~p~l-~d~ 315 (599)
T 1w6s_A 245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK----FGYQKT---PHDEWDYAGVNVMML-SEQ 315 (599)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE----EEEESS---TTCSSCCCCCCCCEE-EEE
T ss_pred ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee----eEeecC---CCccccccCCCccEE-Eec
Confidence 35667776 677777655 37889999998753 222220 000000000011121 222
Q ss_pred c-CCC---CEEEEEe-CCeEEEEeCCCCCceeeeee
Q 011368 322 A-NDG---QHLLSRD-YMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 322 s-~~~---~~l~s~~-d~~i~iwd~~~~~~~~~~~~ 352 (487)
. .+| ..++.++ +|.++++|.++ ++++....
T Consensus 316 ~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 350 (599)
T 1w6s_A 316 KDKDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK 350 (599)
T ss_dssp ECTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred cccCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence 2 567 3555564 59999999987 77766554
No 286
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.58 E-value=0.069 Score=52.44 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCcEEEEEccccceeEe
Q 011368 127 GSMFILSTNDKTIKLWKVRDQKVKKI 152 (487)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~ 152 (487)
+..++.++.|+.|..+|..+|+....
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEee
Confidence 45677888899999999999987654
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.57 E-value=0.041 Score=49.65 Aligned_cols=158 Identities=9% Similarity=0.007 Sum_probs=87.9
Q ss_pred CCCceeEEEeCCCCCEEEEecCCeEEE-EEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 203 HDFNINSISNNSDCETFVSADDLRINL-WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 203 ~~~~v~~i~~s~~~~~l~s~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
....+..+.+.+++.+++.+.++.+.. +|- ++...+.+. ......+..+.+.+++ .++ .++.+|.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s 230 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFS 230 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEEe
Confidence 345688899999998888885555443 332 133333221 1234568889999987 655 55567887776
Q ss_pred EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccccccc
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 361 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 361 (487)
+...++ .+.. ...+. + .....+..+.+.+++..++++.++.| ++.... ++.-..+.......
T Consensus 231 ~~D~G~-------tW~~-~~~~~----~-~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~Dg-G~tW~~~~~~~~~~--- 292 (327)
T 2xbg_A 231 DPDNSE-------NWGE-LLSPL----R-RNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDG-GQTWQQDVDVKKVP--- 292 (327)
T ss_dssp ETTEEE-------EECC-CBCTT----S-SCCSCEEEEEESSSSCEEEEESTTCE-EEESST-TSSCEECGGGTTSS---
T ss_pred cCCCCC-------eeEe-ccCCc----c-cCCcceEEEEecCCCEEEEEeCCCeE-EEeCCC-CcccEEcCccCCCC---
Confidence 433232 2222 00000 0 01235788999998888888877776 333332 43333332111000
Q ss_pred ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368 362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd 398 (487)
..+ .++.|.++++ +++++.+|.|.-++
T Consensus 293 ------~~~---~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 293 ------SNF---YKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp ------SCC---CEEEEEETTE-EEEECSTTEEEEEC
T ss_pred ------CCe---EEEEEECCCc-eEEEcCCceEEEEc
Confidence 011 4788875554 56677788776554
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.57 E-value=0.04 Score=49.44 Aligned_cols=210 Identities=9% Similarity=0.047 Sum_probs=116.0
Q ss_pred cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
...+..++|++.+..|+.+. ..+.|..++.++.... ... ...+...-
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~---------------------~~~--~~~~~~~~--------- 76 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------------------SSY--DTVISRDI--------- 76 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------------C--EEEECSSC---------
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC---------------------ccc--EEEEeCCC---------
Confidence 34578999998766665554 5678888887652100 000 01121111
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
.....+++.+ .++.++++-...+.|.+.+........+
T Consensus 77 ---~~p~glavd~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~-------------------------------------- 114 (316)
T 1ijq_A 77 ---QAPDGLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTL-------------------------------------- 114 (316)
T ss_dssp ---SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEE--------------------------------------
T ss_pred ---CCcCEEEEee-cCCeEEEEECCCCEEEEEeCCCCceEEE--------------------------------------
Confidence 3357788742 2445555556778899988875433222
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
..........+++.|.+..|+.+ .. +.|...+++ +.....+. ...-.....++++|++ .
T Consensus 115 ---------~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~-------~~~~~~P~gla~d~~~-~ 176 (316)
T 1ijq_A 115 ---------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TENIQWPNGITLDLLS-G 176 (316)
T ss_dssp ---------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE-------CSSCSCEEEEEEETTT-T
T ss_pred ---------EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE-------ECCCCCceEEEEeccC-C
Confidence 12223456889999866655554 33 688888877 33222221 1122457899999887 5
Q ss_pred EEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368 268 LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD 344 (487)
Q Consensus 268 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~ 344 (487)
.|+.+ +..+.|..+|+..... +.+.... ..-.....+++. .+ .|...+ .+.|..++..+
T Consensus 177 ~lY~~D~~~~~I~~~d~dg~~~-----~~~~~~~----------~~~~~P~giav~-~~-~ly~~d~~~~~V~~~~~~~- 238 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVNGGNR-----KTILEDE----------KRLAHPFSLAVF-ED-KVFWTDIINEAIFSANRLT- 238 (316)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-----EEEEECT----------TTTSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEEECCCCeEEEEecCCCce-----EEEeecC----------CccCCcEEEEEE-CC-EEEEEECCCCeEEEEeCCC-
Confidence 55554 4567999999875321 2221100 001234667774 23 444443 38888888765
Q ss_pred Cceeeee
Q 011368 345 STPVATF 351 (487)
Q Consensus 345 ~~~~~~~ 351 (487)
++.+..+
T Consensus 239 g~~~~~i 245 (316)
T 1ijq_A 239 GSDVNLL 245 (316)
T ss_dssp CCCCEEE
T ss_pred CcceEEE
Confidence 4444444
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.55 E-value=0.04 Score=49.45 Aligned_cols=205 Identities=7% Similarity=0.004 Sum_probs=116.1
Q ss_pred CcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+.+++|++.+..|.... ..+.|..++.++.... + ..+...-
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~------------------------~--~~~~~~l---------- 78 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV------------------------Q--NVVVSGL---------- 78 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC------------------------C--EEEEECC----------
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce------------------------E--EEEcCCC----------
Confidence 3467899998655555444 5678888887655310 0 0111111
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.....+++.+ .++.++++-...+.|.+++.++.....+
T Consensus 79 --~~p~glavd~-~~g~ly~~d~~~~~I~~~~~dG~~~~~l--------------------------------------- 116 (318)
T 3sov_A 79 --LSPDGLACDW-LGEKLYWTDSETNRIEVSNLDGSLRKVL--------------------------------------- 116 (318)
T ss_dssp --SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE---------------------------------------
T ss_pred --CCccEEEEEc-CCCeEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 3356777742 3455556656778898888875432222
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 268 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 268 (487)
..........+++.|.+..|+.+ . .+.|...+++ +.....++ ...-.....++++|++ ..
T Consensus 117 --------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-------~~~l~~Pnglavd~~~-~~ 179 (318)
T 3sov_A 117 --------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII-------NSEIYWPNGLTLDYEE-QK 179 (318)
T ss_dssp --------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE-------CSSCSCEEEEEEETTT-TE
T ss_pred --------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE-------ECCCCCccEEEEeccC-CE
Confidence 12333456789999866666555 2 5778888877 32222221 1122346899999976 55
Q ss_pred EEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368 269 LAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS 345 (487)
Q Consensus 269 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~ 345 (487)
|+.+ +..+.|..+|+...... ..... .......+++.. ..++..+ .+.|..++..+ +
T Consensus 180 lY~aD~~~~~I~~~d~dG~~~~----~~~~~-------------~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~-G 239 (318)
T 3sov_A 180 LYWADAKLNFIHKSNLDGTNRQ----AVVKG-------------SLPHPFALTLFE--DILYWTDWSTHSILACNKYT-G 239 (318)
T ss_dssp EEEEETTTTEEEEEETTSCSCE----EEECS-------------CCSCEEEEEEET--TEEEEEETTTTEEEEEETTT-C
T ss_pred EEEEECCCCEEEEEcCCCCceE----EEecC-------------CCCCceEEEEeC--CEEEEEecCCCeEEEEECCC-C
Confidence 5544 45788999998753211 11121 013456677653 3444333 38899999865 5
Q ss_pred ceeeeee
Q 011368 346 TPVATFK 352 (487)
Q Consensus 346 ~~~~~~~ 352 (487)
+....+.
T Consensus 240 ~~~~~i~ 246 (318)
T 3sov_A 240 EGLREIH 246 (318)
T ss_dssp CSCEEEE
T ss_pred CceEEEe
Confidence 4444443
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.007 Score=57.09 Aligned_cols=155 Identities=7% Similarity=-0.004 Sum_probs=90.7
Q ss_pred CceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CC----e
Q 011368 205 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG----F 277 (487)
Q Consensus 205 ~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg----~ 277 (487)
.....++++| ++..|+.+ ..+.|+.+|+. .+....+. ........++|++++ +.|+++.. ++ .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~--------~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVY--------SGLSKVRTICWTHEA-DSMIITNDQNNNDRPN 206 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEE--------CCCSCEEEEEECTTS-SEEEEEECCSCTTSEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEe--------cCCCCcceEEEeCCC-CEEEEEeCCCCcccce
Confidence 3467889998 45566666 44889999987 33333322 133457899999999 75555554 22 2
Q ss_pred EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-CCeEEEEeCCCCCceeeeeeccc
Q 011368 278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE 355 (487)
Q Consensus 278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~ 355 (487)
+..++. .+.... ...+.. -.....++++| +|.++++-. .+.|+.++... ...........
T Consensus 207 v~~~~~-~g~~~~--~~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~ 268 (430)
T 3tc9_A 207 NYILTR-ESGFKV--ITELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQD 268 (430)
T ss_dssp EEEEEG-GGTSCS--EEEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSS
T ss_pred EEEEeC-CCceee--eeeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCC
Confidence 333333 332110 011111 13457788999 566555543 48999999864 33212222111
Q ss_pred ccccccccccCCCCcceeeEEEEcCCCCEE-EEEcCCCcEEEEEeCC
Q 011368 356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGV 401 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~sg~~dg~i~iwd~~~ 401 (487)
... ...++|+|+|++| ++-...+.|..++...
T Consensus 269 ~~~--------------P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 269 SGW--------------EFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSC--------------CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCc--------------ceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 100 1489999999954 4555678899988764
No 291
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.48 E-value=0.02 Score=51.93 Aligned_cols=167 Identities=10% Similarity=0.089 Sum_probs=95.4
Q ss_pred CCceeEEEeCCCCCEEEEe-------------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--CCCCE
Q 011368 204 DFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNL 268 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~ 268 (487)
.....++...|+|..++++ .+|.|.++|.++.......+......+.........+.+.+ ++...
T Consensus 49 ~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 49 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3456677788888777775 58899999987433222222211100222334567777766 34123
Q ss_pred EEEE-eC--CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----C--------
Q 011368 269 LAYS-SS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-------- 333 (487)
Q Consensus 269 l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d-------- 333 (487)
|+++ .. +..|.+|++............+.+. .-...+.+.+.++|.+.++.. +
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~------------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~ 196 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM 196 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT------------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccC------------CCCCCceEEEeCCCCEEecCCcEeCCcccccchh
Confidence 4444 33 5678888877643222222333320 124678999999999887753 1
Q ss_pred ------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCC
Q 011368 334 ------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 401 (487)
Q Consensus 334 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~ 401 (487)
|.|+.+|. ++.......-..+ +.++||||++.|+.+. ..+.|+.|++..
T Consensus 197 ~~~~~~g~vyr~d~---~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 197 HLGLAWSFVTYYSP---NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HTTCCCEEEEEECT---TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred hccCCccEEEEEEC---CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 33444443 2222112211111 5899999998777654 568999999974
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.46 E-value=0.04 Score=50.30 Aligned_cols=115 Identities=14% Similarity=0.044 Sum_probs=63.1
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC---CCCEEEEEeCC-----
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSR----- 275 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~d----- 275 (487)
-.....++|.|+|+++++-.++.|++++ . + ....+.+.+ ...........++++|+ +..+.++-...
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g-~~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR-E-G-RLSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE-T-T-EEEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE-C-C-CccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 3456799999999976666669999998 3 2 222221111 12222456799999998 41444443332
Q ss_pred CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368 276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 331 (487)
Q Consensus 276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 331 (487)
+.|..++...+.. ......+..- +.. .-..| ....++|.|||.+.++.
T Consensus 105 ~~v~r~~~~~~~~-~~~~~l~~~~---p~~--~~~~h--~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 105 NQVVRLRHLGERG-VLDRVVLDGI---PAR--PHGLH--SGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEEECSSCE-EEEEEEEEEE---CCC--TTCCC--CCCCEEECTTSCEEEEC
T ss_pred cEEEEEEeCCCCc-CceEEEEEeC---CCC--CCCCc--CCceEEECCCCCEEEEE
Confidence 5777887764321 1111112110 000 00112 23689999999776663
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.45 E-value=0.11 Score=51.52 Aligned_cols=197 Identities=9% Similarity=0.030 Sum_probs=120.4
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+..|+|.+ .++..+.+-..++.|..+++.+.....+.
T Consensus 37 ~~~~~l~~d~-~~~~lywtD~~~~~I~r~~~~g~~~~~v~---------------------------------------- 75 (628)
T 4a0p_A 37 KEASALDFDV-TDNRIYWTDISLKTISRAFMNGSALEHVV---------------------------------------- 75 (628)
T ss_dssp SCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEE----------------------------------------
T ss_pred CceEEEEEEC-CCCEEEEEECCCCeEEEEECCCCCcEEEE----------------------------------------
Confidence 4578899963 34455555567888988888765433221
Q ss_pred ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 271 (487)
.........+++.+.+..|+.+ ..+.|.+.+++. .....++ ...-.....++++|.. ..|+.
T Consensus 76 -------~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~-------~~~l~~P~~iavdp~~-G~lY~ 139 (628)
T 4a0p_A 76 -------EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLV-------WKDLDSPRALALDPAE-GFMYW 139 (628)
T ss_dssp -------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEE-------CSSCCCEEEEEEETTT-TEEEE
T ss_pred -------eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEE-------eCCCCCcccEEEccCC-CeEEE
Confidence 1122345678887766666555 678999999873 3222221 1222456899999965 45555
Q ss_pred EeC--CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCce
Q 011368 272 SSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTP 347 (487)
Q Consensus 272 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~ 347 (487)
... .+.|...++...... ..... -.....+++++++..|..++. +.|..+|+.. ...
T Consensus 140 tD~g~~~~I~r~~~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~~ 200 (628)
T 4a0p_A 140 TEWGGKPKIDRAAMDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNR 200 (628)
T ss_dssp EECSSSCEEEEEETTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC
T ss_pred eCCCCCCEEEEEeCCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cce
Confidence 542 567777777654321 11222 246789999998888887753 8899999864 222
Q ss_pred eeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 348 VATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 348 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
..+... ..+ .++++.. +...++-...+.|...|..+++.
T Consensus 201 -~v~~~~l~~P----------------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 201 -EVIADDLPHP----------------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp -EEEEECCSCE----------------EEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred -EEeeccCCCc----------------eEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 233211 111 3777765 44445555678898888777654
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.45 E-value=0.11 Score=52.82 Aligned_cols=202 Identities=9% Similarity=0.030 Sum_probs=113.1
Q ss_pred cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
...+..|+|++.+..|+... ..+.|+.+++++.... ......+....
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----------------------~~~~~vi~~~l--------- 470 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI--------- 470 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC---------
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----------------------cceeEEEecCC---------
Confidence 44577899998655555444 5577888887643110 00011122111
Q ss_pred ccccceeEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.....|++. ..+ .++++-...+.|.+.++.+.....+
T Consensus 471 ---~~P~GLAvD--~~~~~LY~tD~~~~~I~v~~ldG~~~~~l------------------------------------- 508 (791)
T 3m0c_C 471 ---QAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTL------------------------------------- 508 (791)
T ss_dssp ---SCCCEEEEE--TTTTEEEEEETTTTEEEEEETTSSSEEEE-------------------------------------
T ss_pred ---CCcceeeee--ecCCcEEEEecCCCeEEEEeCCCCeEEEE-------------------------------------
Confidence 445678874 344 5555556778899998876543322
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 266 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 266 (487)
+.........|++.|.+..|+.+ .. +.|...+++ +.....++ ...-.....|++++.+
T Consensus 509 ----------~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv-------~~~l~~P~GLavD~~~- 569 (791)
T 3m0c_C 509 ----------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TENIQWPNGITLDLLS- 569 (791)
T ss_dssp ----------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE-------CSSCSCEEEEEEETTT-
T ss_pred ----------EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEE-------eCCCCCceEEEEecCC-
Confidence 12233457899999876666555 33 678888887 33333322 1223467899999877
Q ss_pred CEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCC
Q 011368 267 NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRM 343 (487)
Q Consensus 267 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~ 343 (487)
..|+.+. ..+.|...++...... ...... +.-.....|++. +..|+..+ . +.|...+..+
T Consensus 570 ~~LYwaD~~~~~I~~~d~dG~~~~----~v~~~~-----------~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSIDVNGGNRK----TILEDE-----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE----EEEECT-----------TTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CeEEEEeCCCCcEEEEecCCCceE----EEecCC-----------CccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 5555554 4678999998654321 222210 001223456654 34565554 3 7888887655
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.42 E-value=0.0026 Score=64.01 Aligned_cols=157 Identities=11% Similarity=0.027 Sum_probs=86.8
Q ss_pred ceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-CC-CeEEEE
Q 011368 206 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRLV 281 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-g~i~iw 281 (487)
....|++.+.+..|+.+ ..+.|.+.++. +.....++ .........++++|.+ ..|+.+. .. +.|..+
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l~-------~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEEC-------CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEEE-------eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEE
Confidence 34578888655455444 67889999987 33322221 1112234678899876 4444433 22 677777
Q ss_pred EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeeeecc-cccc
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIH-EHLR 358 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~-~~~~ 358 (487)
++..... +.+.. ..-.....|+|+|++..|+.++ .+.|..+++.. .....+... ....
T Consensus 525 ~~dG~~~-----~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~~~ 585 (699)
T 1n7d_A 525 GLNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLA 585 (699)
T ss_dssp CSSSCCC-----CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCSSSCS
T ss_pred eCCCCCe-----eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC--CceEEEEecCCcCC
Confidence 6654321 11111 0013467899999877776664 38899999863 222222211 1000
Q ss_pred cccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 359 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
....+++..+ .++++....+.|..++..+++.
T Consensus 586 -------------~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 586 -------------HPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp -------------SCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred -------------CceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 0025666544 4445555678999999877643
No 296
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.41 E-value=0.083 Score=49.16 Aligned_cols=211 Identities=9% Similarity=0.029 Sum_probs=117.7
Q ss_pred cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
...+..|+|++.+..|+..+ ..+.|+.+++++.... ......+....
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-----------------------~~~~~~~~~~~--------- 158 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI--------- 158 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------------CCCEEEECSSC---------
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-----------------------CcceEEEeCCC---------
Confidence 45678999998766666554 5677888887653100 00011122111
Q ss_pred ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
.....|++.+ ..+.++++-...+.|.+.++++.....+
T Consensus 159 ---~~p~glavD~-~~~~lY~~d~~~~~I~~~~~~g~~~~~l-------------------------------------- 196 (400)
T 3p5b_L 159 ---QAPDGLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTL-------------------------------------- 196 (400)
T ss_dssp ---SCEEEEEEET-TTTEEEEEETTTTEEEEECTTTCSEEEE--------------------------------------
T ss_pred ---CCcccEEEEe-cCCceEEEECCCCeEEEEeCCCCceEEE--------------------------------------
Confidence 4567788842 2455556666778888888876543322
Q ss_pred eccceeeeecccCCCceeEEEeCCCCCEEEEe--c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
+.........|++.|.+..|+.+ . .+.|...+++ +.....++ ...-.....|+++|++ .
T Consensus 197 ---------~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~-------~~~l~~P~glavd~~~-~ 258 (400)
T 3p5b_L 197 ---------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TENIQWPNGITLDLLS-G 258 (400)
T ss_dssp ---------EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEE-------CSSCSCEEEEEEETTT-T
T ss_pred ---------EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEE-------ECCCCceEEEEEEeCC-C
Confidence 12233446889999866666555 2 4778888887 33322221 1222457899999887 5
Q ss_pred EEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC-CeEEEEeCCCC
Q 011368 268 LLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMD 344 (487)
Q Consensus 268 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d-~~i~iwd~~~~ 344 (487)
.|+.+. ..+.|..+|+...... ...... +.-.....+++. +..|+.. .. +.|..+|..+
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~----~~~~~~-----------~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~- 320 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDVNGGNRK----TILEDE-----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT- 320 (400)
T ss_dssp EEEEEETTTTEEEEEETTSCCCE----EEEECS-----------STTSSEEEEEEE--TTEEEEEESSSCSEEEEESSS-
T ss_pred EEEEEECCCCEEEEEeCCCCccE----EEEeCC-----------CCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCC-
Confidence 565554 5678999998754321 111110 001234566663 3344433 33 7888888655
Q ss_pred Cceeeeee
Q 011368 345 STPVATFK 352 (487)
Q Consensus 345 ~~~~~~~~ 352 (487)
++.+..+.
T Consensus 321 G~~~~~i~ 328 (400)
T 3p5b_L 321 GSDVNLLA 328 (400)
T ss_dssp CCCCEEEE
T ss_pred CCceEEEe
Confidence 54444443
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.37 E-value=0.036 Score=49.20 Aligned_cols=173 Identities=10% Similarity=0.061 Sum_probs=103.6
Q ss_pred ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (487)
Q Consensus 115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
--.+++|.+ .++.++++.-..++|..|+...+....+.......
T Consensus 14 yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~----------------------------------- 57 (334)
T 2p9w_A 14 TPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASS----------------------------------- 57 (334)
T ss_dssp CCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCC-----------------------------------
T ss_pred CCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccc-----------------------------------
Confidence 346788952 34444444458999999999766543331000000
Q ss_pred eeeeecccCCCceeEEEe---CCCCCEEEEe-c-------------CCeEEEEEcc---CCCceeEEeecCCCCCCC---
Q 011368 195 ATKVYPHAHDFNINSISN---NSDCETFVSA-D-------------DLRINLWNLE---ISDQCFNIVDMKPSNMDD--- 251 (487)
Q Consensus 195 ~~~~~~~~~~~~v~~i~~---s~~~~~l~s~-~-------------d~~i~iwd~~---~~~~~~~~~~~~~~~~~~--- 251 (487)
-......+..+.| .|+++++++. . +..|..+|+. +++.... .++.. ...+
T Consensus 58 -----~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~-~~~~~~~ 130 (334)
T 2p9w_A 58 -----NGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS-VNFEK-VQDEFEK 130 (334)
T ss_dssp -----SSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE-EESHH-HHHHHHH
T ss_pred -----cCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEE-ecCcc-ccccccc
Confidence 0001123578899 6887777764 2 6779999988 5544332 22110 0000
Q ss_pred ----CCCcEEEEEEecCCCCEEEEEeCC-CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368 252 ----LTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 326 (487)
Q Consensus 252 ----~~~~v~~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~ 326 (487)
-......++..++| +..++++.. +.|...+...... ..+.. .... .......+.|+++|+|+
T Consensus 131 ~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~~-----~~~~~-~~~~------~~~~~G~nGIv~~pdg~ 197 (334)
T 2p9w_A 131 KAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKTV-----STFAW-ESGN------GGQRPGYSGITFDPHSN 197 (334)
T ss_dssp HHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCCE-----EEEEE-CCCC------SSSCCSCSEEEEETTTT
T ss_pred cccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCEE-----eeeee-cCCC------cccccCcceEEEeCCCC
Confidence 11347899999999 999988888 8877777664321 22221 0000 01123578999999999
Q ss_pred EEEEEe-CCeEEEEeCCC
Q 011368 327 HLLSRD-YMNLKLWDIRM 343 (487)
Q Consensus 327 ~l~s~~-d~~i~iwd~~~ 343 (487)
.|++.. .+.|..+|+..
T Consensus 198 ~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 198 KLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEESSSSSEEEEECSS
T ss_pred EEEEEcCCCeEEEEcCCC
Confidence 888874 59999999874
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.30 E-value=0.067 Score=47.53 Aligned_cols=182 Identities=9% Similarity=-0.004 Sum_probs=103.9
Q ss_pred cCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC-CCcEEEEEE---ecCCCCEEEEEe--
Q 011368 202 AHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEF---HPIYCNLLAYSS-- 273 (487)
Q Consensus 202 ~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~---~p~~~~~l~~~~-- 273 (487)
....--.+++|.+ ++.++++. ..++|..|+... +....+ ..+.....+. ...+..|.| .|++ .++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~ 86 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA 86 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence 3344456889977 45555556 899999999873 333332 1110000011 124578999 6887 7777544
Q ss_pred -----------CCCeEEEEEcc---CCccccccceeecccccccCccccccc-cccceeEEEEcCCCCEEEEEe-C-CeE
Q 011368 274 -----------SRGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRD-Y-MNL 336 (487)
Q Consensus 274 -----------~dg~i~iwd~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~s~~-d-~~i 336 (487)
.+..|..||+. +++.. ............ ....+ -......++..++|+..++++ - +.|
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL~~~~~~~-~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I 161 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPV----WSVNFEKVQDEF-EKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI 161 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCS----EEEESHHHHHHH-HHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEE----EEecCccccccc-cccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence 26789999998 66533 111110000000 00000 013488999999999888775 3 566
Q ss_pred EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
...+.. ++.+..+-....... .....+.++++|+|..|++...+|.+..+|+.+.
T Consensus 162 ~rV~pd--G~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 162 ARVSAD--GKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEECTT--SCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EEEeCC--CCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 555553 443333321111000 0111258999999998888877999999998843
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.18 E-value=0.0039 Score=62.77 Aligned_cols=122 Identities=8% Similarity=-0.004 Sum_probs=66.2
Q ss_pred CceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368 205 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 281 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 281 (487)
.....+++.|.+..|+.+ .. +.|...++.. .....++ ...-.....|+|+|++..++++-+..+.|..+
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~-------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~ 567 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEES-------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEE-------eCCCCCccEEEEeccCCEEEEEecCCCeEEEE
Confidence 345788899866555554 33 6787777762 2221111 11123456799999863555555567889999
Q ss_pred EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e-CCeEEEEeCCCCCceeeeee
Q 011368 282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRMDSTPVATFK 352 (487)
Q Consensus 282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~ 352 (487)
++..... +.+.... ..-.....|++..+ .|+.. . .+.|..++..+ ++.+..+.
T Consensus 568 d~dG~~~-----~~~~~~~----------~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~-G~~~~~i~ 622 (699)
T 1n7d_A 568 DVNGGNR-----KTILEDE----------KRLAHPFSLAVFED--KVFWTDIINEAIFSANRLT-GSDVNLLA 622 (699)
T ss_dssp CSSSSCC-----EEECCCS----------SSCSSCCCCEEETT--EEEEECSTTTCEEEEETTT-EEEEECCC
T ss_pred ccCCCce-----EEEEecC----------CcCCCceEeEEECC--EEEEEeCCCCeEEEEEccC-CCceEEee
Confidence 9865321 2221100 00112344555443 44443 3 38899998765 55555553
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.10 E-value=0.15 Score=46.14 Aligned_cols=153 Identities=10% Similarity=0.123 Sum_probs=86.6
Q ss_pred ceeEEEeCC--CCC--EEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEEEEEeC---
Q 011368 206 NINSISNNS--DCE--TFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSS--- 274 (487)
Q Consensus 206 ~v~~i~~s~--~~~--~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~--- 274 (487)
....+.+.+ +++ ++++- . +.+|.+|+++..+.....+. ++.+ .-...+.+.+.++| .+.++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ft 187 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFI 187 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCS
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeC
Confidence 445555533 343 44442 3 67888988875544444331 1222 22457899999998 76666531
Q ss_pred --------------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368 275 --------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL 338 (487)
Q Consensus 275 --------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i 338 (487)
.|.|.-+|. ++.. ..... -..-+.++|+||++.|..++ .+.|+.
T Consensus 188 d~~~~~~e~~~~~~~g~vyr~d~--~~~~----~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 188 DPYLKSWEMHLGLAWSFVTYYSP--NDVR----VVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp SHHHHHHHHHTTCCCEEEEEECT--TCCE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred CcccccchhhccCCccEEEEEEC--CeEE----EeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 133444433 2211 11222 23568999999999888875 389999
Q ss_pred EeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCC-CcEEEEEe
Q 011368 339 WDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSH 399 (487)
Q Consensus 339 wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~d-g~i~iwd~ 399 (487)
|++...+.. ...+.....+ -.+++.+ +|++.+++..+ +.|..|+.
T Consensus 248 ~~~~~~g~l~~~~~~~~~g~P----------------DGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 248 YEKHANWTLTPLRVLSFDTLV----------------DNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEECTTSCEEEEEEEECSSEE----------------EEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEECCCCcEecCEEEeCCCCC----------------ceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 998643322 1222111111 3789998 59887766544 34444443
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.05 E-value=0.18 Score=45.99 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~ 60 (487)
.....++|.|+|+++++ ..+|.|.+++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence 35679999999996555 5679998888
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.05 E-value=0.18 Score=45.97 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~ 60 (487)
.....|+|.|+|++++ +..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe
Confidence 3578999999998555 45669998886
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.01 E-value=0.32 Score=48.10 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=92.2
Q ss_pred CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC--CCeEEE
Q 011368 205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL 280 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i~i 280 (487)
.....+++.+.++.|+.+ ..+.|.+.+++ +.....++ ...-.....|+++|.+ ..|+.+.. .+.|..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~-------~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLF-------WQELDQPRAIALDPSS-GFMYWTDWGEVPKIER 154 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCCEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEE-------eCCCCCCceEEEecCC-CeEEEeccCCCCEEEE
Confidence 457889998866666655 78899999998 33322222 1222345789999976 45555443 356666
Q ss_pred EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCceeeeeec--ccc
Q 011368 281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI--HEH 356 (487)
Q Consensus 281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~~~~--~~~ 356 (487)
.++...... ..... .-.....+++++++..|..++. +.|...|+.. .....+.. ...
T Consensus 155 ~~~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--~~~~~~~~~~~~~ 215 (619)
T 3s94_A 155 AGMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKGSLPH 215 (619)
T ss_dssp EETTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--CEEC---------
T ss_pred EECCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--CccEEEEeCCCCC
Confidence 666543211 11111 0245789999998887777653 7888888863 32222211 111
Q ss_pred cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
+ .++++..+ ...++-...+.|...|..+++.
T Consensus 216 P----------------~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 216 P----------------FALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp C----------------CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred c----------------eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 1 36777655 4444555678899999887754
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.81 E-value=0.18 Score=46.31 Aligned_cols=166 Identities=11% Similarity=0.115 Sum_probs=98.4
Q ss_pred eCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc
Q 011368 212 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 291 (487)
Q Consensus 212 ~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 291 (487)
...+|..++.+.++.||.-++... ..++++..+. .+ .-..|..+..+|+| .+||..+.. .|.|..+..+.....
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~-~~Yk~L~~~~-~i--~f~~i~qlvlSpsG-~lLAl~g~~-~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTD-SLYHSLNFSR-HL--VLDDTFHVISSTSG-DLLCLFNDN-EIFVMEVPWGYSNVE 101 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTC-SSCEEEECTT-TC--CCCTTCEEEECTTS-SEEEEECSS-EEEEEECCTTCSCCC
T ss_pred EEcCCCEEEEEECCEEEEEECCCC-CcceEEecCc-cc--ccCceeEEEECCCC-CEEEEecCC-eEEEEEecCccccCc
Confidence 345788888888889998888733 3455543220 00 11246789999999 888887654 789998884321110
Q ss_pred ------cce--eecccccccCccccccccccceeEEEEcCCC---CEEEE-EeCCeEEEEeCCCC-Cceeeeeecccccc
Q 011368 292 ------SAR--ILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLS-RDYMNLKLWDIRMD-STPVATFKIHEHLR 358 (487)
Q Consensus 292 ------~~~--~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~ 358 (487)
..+ .+.. ... ......+|..+.|+|-+ ..|++ .+|+.|++||+... .++. .++....
T Consensus 102 ~~~~~~~~q~~ty~l--~~~-----~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~-- 171 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSI--DEE-----EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN-- 171 (452)
T ss_dssp CHHHHHTTEEEEEEG--GGC-----C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS--
T ss_pred ccccccccceeEEEc--CCc-----ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc--
Confidence 111 1221 000 01125689999999854 45665 46799999999752 2333 3331111
Q ss_pred cccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEE
Q 011368 359 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIF 397 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iw 397 (487)
.+...+.+..+.+++|++++-.|...+ .+|.|+-.
T Consensus 172 ----~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 ----SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ----EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ----ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 011112234567999999887676644 77877643
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.77 E-value=0.28 Score=43.97 Aligned_cols=133 Identities=11% Similarity=0.123 Sum_probs=77.7
Q ss_pred CceeEEEe--CCC-CC-EEEEe-cCCeEEEEEccCC--C-ceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368 205 FNINSISN--NSD-CE-TFVSA-DDLRINLWNLEIS--D-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 276 (487)
Q Consensus 205 ~~v~~i~~--s~~-~~-~l~s~-~d~~i~iwd~~~~--~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 276 (487)
..+..+++ +|. ++ ++++. .++.+..|++... + ...+.+ +++. ..+.+..+...+.. ..|+.+-++.
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV----R~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~ 201 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV----RAFK-MNSQTEGMAADDEY-GRLYIAEEDE 201 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE----EEEE-CSSCEEEEEEETTT-TEEEEEETTT
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE----EEec-CCCCcceEEEcCCC-CeEEEecccc
Confidence 45667777 774 44 45555 8899999998432 1 111111 1111 23467888999887 8999999987
Q ss_pred eEEEEEccCCccc-cccceeecccccccCccccccccccceeEEEE--cCCCC-EEEEEe--CCeEEEEeCCCCCceeee
Q 011368 277 FVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQ-HLLSRD--YMNLKLWDIRMDSTPVAT 350 (487)
Q Consensus 277 ~i~iwd~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~s~~--d~~i~iwd~~~~~~~~~~ 350 (487)
.|..++.+..... ...+..+.. ......+..|++ .++++ ||++++ ++++.+||.....+.+..
T Consensus 202 GIw~~da~p~~~~~~~~v~~~~~-----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 202 AIWKFSAEPDGGSNGTVIDRADG-----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp EEEEEECSTTSCSCCEEEEEBSS-----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred eEEEEeCCcCCCCCceEEEEecC-----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 7777775522100 000111111 011235777777 56666 666554 489999999733666766
Q ss_pred eecc
Q 011368 351 FKIH 354 (487)
Q Consensus 351 ~~~~ 354 (487)
+...
T Consensus 271 f~Ig 274 (355)
T 3amr_A 271 FRIT 274 (355)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6533
No 306
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.77 E-value=0.29 Score=44.12 Aligned_cols=118 Identities=11% Similarity=0.022 Sum_probs=65.7
Q ss_pred cCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC----CCCEEEEEe--C
Q 011368 202 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSS--S 274 (487)
Q Consensus 202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~~~~--~ 274 (487)
..-...+.|+|.|+|+++++- ..|.|++++... +....+... +............|+++|+ + .+.++-+ .
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~ 105 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT-GRKTELGEV-PGVSPSGEGGLLGIALSPDYASDH-MVYAYFTSAS 105 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-TTCCCBTTBSEEEEEECTTHHHHC-EEEEEEECSS
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCC-CcEeeeccc-CceeecCCCCceeeEeccccccCC-EEEEEEecCC
Confidence 334567899999999988888 599999998653 332222111 1122233456899999995 4 3333322 3
Q ss_pred CCeEEEEEccCCc----cccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368 275 RGFVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 331 (487)
Q Consensus 275 dg~i~iwd~~~~~----~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 331 (487)
++.|.-|.+..+. ........+.. . +. -..| .-..|+|.|||.+.++.
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~--~-p~----~~~H--~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRG--I-PK----GVIH--NGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEE--E-CC----CSSC--CCCCEEECTTSCEEEEC
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEc--C-CC----CCCc--cCccccCCCCCCEEEEE
Confidence 4455556555421 11111112221 0 00 0122 35679999999877763
No 307
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.65 E-value=0.3 Score=43.26 Aligned_cols=136 Identities=7% Similarity=-0.038 Sum_probs=71.9
Q ss_pred EeCCCCCEEEEec---CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEEEEEccCC
Q 011368 211 SNNSDCETFVSAD---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQS 286 (487)
Q Consensus 211 ~~s~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~~~ 286 (487)
.++++++.|+-+. ++.-.||.+...+...+.+ ..+.. ..++|++ ..|+-.+. ...|..-++..+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~l-------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI-------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEE-------ESSCC----CCSEEET-TEEEEECTTTCCEEEEETTTT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEE-------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEECCCC
Confidence 5667888887653 4444444443223222221 11211 3467888 67776655 567777777665
Q ss_pred ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C-CeEEEEeCCCCCceeeeeeccccccccccc
Q 011368 287 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 363 (487)
Q Consensus 287 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
... +.+.+ ... ..+.|++.+|+-.+ + ..|..-++. +.....+....
T Consensus 178 ~~~----~l~~~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~-------- 226 (302)
T 3s25_A 178 SEA----LFYDC----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN-------- 226 (302)
T ss_dssp EEE----EEECS----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC--------
T ss_pred CEE----EEeCC----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC--------
Confidence 421 22222 122 23569999888654 2 355555554 44344443211
Q ss_pred ccCCCCcceeeEEEEcCCCCEEEEEcC--CCcEEEEEeC
Q 011368 364 LYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHG 400 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~s~d~~~l~sg~~--dg~i~iwd~~ 400 (487)
...|+|++++|.-++. .+.|..-++.
T Consensus 227 -----------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 227 -----------IEHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp -----------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred -----------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence 2347888888876533 3455555554
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.64 E-value=0.4 Score=44.07 Aligned_cols=114 Identities=8% Similarity=0.034 Sum_probs=70.1
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccc--cccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368 263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE--IIASISDIKFANDGQHLLSRDYMNLKLWD 340 (487)
Q Consensus 263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~s~~d~~i~iwd 340 (487)
.+| .-++.+- ++.||..++..... + +.+.. +. .-..+..+..+|+|++||..++..|.|-.
T Consensus 30 ~n~-t~i~~a~-~n~iR~~~i~~~~~-Y---k~L~~-----------~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~ 92 (452)
T 3pbp_A 30 QNG-TRIVFIQ-DNIIRWYNVLTDSL-Y---HSLNF-----------SRHLVLDDTFHVISSTSGDLLCLFNDNEIFVME 92 (452)
T ss_dssp TTT-TEEEEEE-TTEEEEEETTTCSS-C---EEEEC-----------TTTCCCCTTCEEEECTTSSEEEEECSSEEEEEE
T ss_pred cCC-CEEEEEE-CCEEEEEECCCCCc-c---eEEec-----------CcccccCceeEEEECCCCCEEEEecCCeEEEEE
Confidence 444 4444443 46788888774321 1 33333 00 01257889999999999998888999999
Q ss_pred CCCCCcee-----------eeeecccccccccccccCCCCcceeeEEEEcC---CCCEEEEEcCCCcEEEEEeCCC
Q 011368 341 IRMDSTPV-----------ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 341 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+....... +.+..... .. ..-..|..+.|+| .+..|++-..|+.|++||+...
T Consensus 93 LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~-~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 93 VPWGYSNVEDVSIQDAFQIFHYSIDEE--------EV-GPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp CCTTCSCCCCHHHHHTTEEEEEEGGGC--------C---CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred ecCccccCcccccccccceeEEEcCCc--------cc-CCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 87321111 11111110 00 0011246999999 4668999999999999999864
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.54 E-value=0.12 Score=47.17 Aligned_cols=114 Identities=13% Similarity=0.016 Sum_probs=62.4
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC---CCCEEEEEeC---C--
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS---R-- 275 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~---d-- 275 (487)
-.....++|.|+|+++++-.++.|++++.. +. ..+...+ ...........|+++|+ +..+.++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~--G~-~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISPS--GK-KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECSS--CE-EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeCC--Cc-eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 345789999999986666666999998743 33 2222111 11222356789999997 4144444332 3
Q ss_pred --CeEEEEEccCCcc-ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368 276 --GFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 331 (487)
Q Consensus 276 --g~i~iwd~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 331 (487)
..|..|+...... .......+.. . + .-..| ....++|.|||.++++.
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~--~-~----~~~~h--~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDG--I-P----GAYIH--NGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEE--E-E----CCSSC--CCCCEEECTTSCEEEEC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEc--C-C----CCCCc--CCceEEECCCCcEEEEE
Confidence 5677777665410 1000011111 0 0 00112 34679999999877763
No 310
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.19 E-value=0.48 Score=44.76 Aligned_cols=118 Identities=10% Similarity=0.077 Sum_probs=63.1
Q ss_pred CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC--CCCCcEEEEEEecC---CCCEEEEEeC---
Q 011368 204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPI---YCNLLAYSSS--- 274 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~---~~~~l~~~~~--- 274 (487)
-...+.|+|.|+|+++++- ..+.|++++... +....+.... ..+. .....+..|+|+|+ +..+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~-~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVP-EIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECT-TCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCC-ccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3456799999999988887 445788887652 3332222221 1111 13456889999994 4144444332
Q ss_pred ---------CCeEEEEEccCCc-cccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368 275 ---------RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 332 (487)
Q Consensus 275 ---------dg~i~iwd~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 332 (487)
...|.-++...+. .+......+.. . +. -.. .....|+|.|||.+.++..
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~--~-p~----~~~--H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG--L-PS----SKD--HQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEE--E-CC----CSS--CCEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEc--C-CC----CCC--CCCCeEeECCCCeEEEEEC
Confidence 1345555554321 01111112221 0 00 011 2468999999998777643
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.16 E-value=0.73 Score=41.86 Aligned_cols=30 Identities=7% Similarity=0.353 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~ 145 (487)
.....|+| .++|..|+.+...+.|++++..
T Consensus 18 ~~P~~i~~--~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAF--LPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEE--CSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEE--cCCCCEEEEEeCCceEEEEeCC
Confidence 44688999 5788734455567888888753
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.13 E-value=0.66 Score=41.01 Aligned_cols=214 Identities=12% Similarity=0.093 Sum_probs=124.1
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
+|..+.+|.-. ..++.++|+++.+..+.. ..
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~------------------------------------------------~~ 105 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAH------------------------------------------------TM 105 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEE------------------------------------------------EC
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcce------------------------------------------------ec
Confidence 35566666654 678999999988655442 22
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-------CC
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-------RG 276 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------dg 276 (487)
...|.-=.|-. .+.|+--.+..|+-|++.....+.++.+-. ..+. ...|-.-..+++. ++++..+- .|
T Consensus 106 ~e~VvfWkWis-~~~L~lVT~taVyHWs~~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G 180 (365)
T 2xzh_A 106 TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVG 180 (365)
T ss_dssp SSCEEEEEECS-SSEEEEEESSEEEEEESSTTCCCEEEEECC-GGGT--TCEEEEEEECTTS-CEEEEEEEEEETTEEEE
T ss_pred CCccEEEEecC-CCeEEEEcCCcEEEEcccCCCCCceeeecc-hhcc--cceEEEEEECCCC-CEEEEEeEeccCCccce
Confidence 34566667753 345655567799999998655666655322 2232 3567777778887 77766543 36
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---CCEEEEEe---C-CeEEEEeCCCC--Cce
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSRD---Y-MNLKLWDIRMD--STP 347 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~s~~---d-~~i~iwd~~~~--~~~ 347 (487)
.+.+|..+.+.. +.+++| .+....+.+..+ ..+++.+. . +.++|-++..+ +.+
T Consensus 181 ~mQLYS~er~~s-----Q~ieGh-------------aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~ 242 (365)
T 2xzh_A 181 AMQLYSVDRKVS-----QPIEGH-------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 242 (365)
T ss_dssp EEEEEETTTTEE-----EEECCS-------------EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCC
T ss_pred eEEEEeeccccc-----ceeeee-------------eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCC
Confidence 788998877542 566664 333333332211 11233232 2 68899988542 111
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
....+.-+-. ..+...+|-- .++..|+.-..+..-+.-|.|++||++++. ....-+-..+++
T Consensus 243 ~f~kk~vdi~---fppea~~DFP---Vamqvs~kygviyviTK~G~ihlyDleTgt-~i~~nrIS~d~i 304 (365)
T 2xzh_A 243 PFPKKAVDVF---FPPEAQNDFP---VAMQISEKHDVVFLITKYGYIHLYDLETGT-CIYMNRISGETI 304 (365)
T ss_dssp CCCCEEEEEC---CCTTCTTCCE---EEEEEETTTTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCE
T ss_pred Ccccccceee---CCccccCCce---EEEEecccCCEEEEEeCCcEEEEEEcccCc-EEEEeccCCCce
Confidence 1100000000 0000111222 478889888889999999999999999993 344444444444
No 313
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.07 E-value=1.3 Score=43.80 Aligned_cols=203 Identities=7% Similarity=-0.087 Sum_probs=105.0
Q ss_pred cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368 32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (487)
Q Consensus 32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (487)
...+..++|++.+..|+.+. ..+.|..++.++.... ...+....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--------------------------~~v~~~~~--------- 83 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------------QNVVVSGL--------- 83 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------------------------EEEECSSC---------
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------------------------EEEEeCCC---------
Confidence 34578999999777776665 4567888887654210 11122211
Q ss_pred ccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368 111 EIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (487)
Q Consensus 111 ~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.....|++. . .+.++++-...+.|.+.+.++.....+..... .....+++.+..+.++....... ..+....
T Consensus 84 ---~~P~GlAvD--~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l-~~P~~Iavdp~~g~ly~tD~g~~-~~I~r~~ 156 (619)
T 3s94_A 84 ---LSPDGLACD--WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-DQPRAIALDPSSGFMYWTDWGEV-PKIERAG 156 (619)
T ss_dssp ---SCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-SCCCCEEEETTTTEEEEEECSSS-CEEEEEE
T ss_pred ---CCcCeEEEE--ecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC-CCCceEEEecCCCeEEEeccCCC-CEEEEEE
Confidence 457888884 4 44555555678899999988765433332111 11234444444443333322111 1111111
Q ss_pred eeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368 190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 267 (487)
++ +.....+....-...+.+++++++..|+.+ ..+.|...+++ +.....++ .+.......+++..+ .
T Consensus 157 ~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~~-------~~~~~~P~gi~~~~~--~ 225 (619)
T 3s94_A 157 MD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVV-------KGSLPHPFALTLFED--I 225 (619)
T ss_dssp TT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC----------------CCCEEESSS--E
T ss_pred CC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEEE-------eCCCCCceEEEEeCC--E
Confidence 11 111222223334567899999987777776 67788888887 33222221 111112245566543 3
Q ss_pred EEEEEeCCCeEEEEEccCCc
Q 011368 268 LLAYSSSRGFVRLVDMRQSA 287 (487)
Q Consensus 268 ~l~~~~~dg~i~iwd~~~~~ 287 (487)
++.+-...+.|...|..+++
T Consensus 226 ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 226 LYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEECTTTCSEEEEESSSCC
T ss_pred EEEecCCCCEEEEEECCCCc
Confidence 44444456788888887765
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.97 E-value=1.4 Score=43.51 Aligned_cols=200 Identities=11% Similarity=-0.071 Sum_probs=110.2
Q ss_pred CcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (487)
..+..|+|++.+..|+.+. .++.|..+++++.... ..+....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------------------------~v~~~g~---------- 79 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------------------------HVVEFGL---------- 79 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------------------------EEEeCCC----------
Confidence 4578999999776666554 6678888887654321 1111111
Q ss_pred cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (487)
Q Consensus 112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
.....|++.+ ..++++++-...+.|.+.++++.....+..... .....++..+..+.++....... ..+.....+
T Consensus 80 --~~P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-~~P~~iavdp~~G~lY~tD~g~~-~~I~r~~~d 154 (628)
T 4a0p_A 80 --DYPEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-DSPRALALDPAEGFMYWTEWGGK-PKIDRAAMD 154 (628)
T ss_dssp --SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSSC-CCEEEEEEETTTTEEEEEECSSS-CEEEEEETT
T ss_pred --CCcceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-CCcccEEEccCCCeEEEeCCCCC-CEEEEEeCC
Confidence 3356777742 334555555677889999987654433332222 22345555554444444332111 111111111
Q ss_pred ccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368 192 ENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 269 (487)
. .....+ ...-...+.++++++++.|+.+ ..+.|...|++.... +++ .........+++.. + .++
T Consensus 155 G-~~~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~-------~~~l~~P~glav~~-~-~ly 221 (628)
T 4a0p_A 155 G-SERTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVI-------ADDLPHPFGLTQYQ-D-YIY 221 (628)
T ss_dssp S-CSCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE-------EECCSCEEEEEEET-T-EEE
T ss_pred C-CceEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEe-------eccCCCceEEEEEC-C-EEE
Confidence 1 111222 2234567899999987777777 678899999974333 222 11223356777765 3 455
Q ss_pred EEEeCCCeEEEEEccCCc
Q 011368 270 AYSSSRGFVRLVDMRQSA 287 (487)
Q Consensus 270 ~~~~~dg~i~iwd~~~~~ 287 (487)
.+-...+.|...|..+++
T Consensus 222 ~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EecCCCCEEEEEECCCCC
Confidence 555557788888865553
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.95 E-value=0.18 Score=41.71 Aligned_cols=112 Identities=13% Similarity=-0.083 Sum_probs=64.3
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCc--------EEEEEEecCCCCEEEEEeCCC
Q 011368 205 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV--------ITSAEFHPIYCNLLAYSSSRG 276 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------v~~v~~~p~~~~~l~~~~~dg 276 (487)
..+.+++|+|+|.+.++ .++.++-.+..+.... ..-+.... -.++.|.|+| .+.++ .||
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~---------~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG 107 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND---------NWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKD 107 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC---------CHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETT
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcc---------cccccccEecccccccceEEEECCCC-CEEEe--CCC
Confidence 47789999999987777 7777655554321110 00011111 3678899999 66666 569
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 340 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd 340 (487)
.|.-++..+... ..+-. . . ...-..-=..+..|.+.|+|.+.+.. ++.++-+.
T Consensus 108 ~iyr~~pP~~~~-----~~Wl~-~-a---~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~ 160 (236)
T 1tl2_A 108 KLYKASPPQSDT-----DNWIA-R-A---TEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKAL 160 (236)
T ss_dssp EEEEESCCCSTT-----CCHHH-H-S---EEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEEC
T ss_pred EEEEeCCCcCCC-----Cceec-c-c---cEeccCCCCceEEEEECCCceEEEEe-CCcEEecC
Confidence 887776533211 11110 0 0 00000001357999999999988888 88765433
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.67 E-value=1.2 Score=40.39 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEe
Q 011368 34 IVSAIEFDKTGDYLAVGDRGGRVILFET 61 (487)
Q Consensus 34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~ 61 (487)
....|+|.|+|++|..+...|.|++++.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 5689999999993444556799988874
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.54 E-value=0.67 Score=38.37 Aligned_cols=116 Identities=7% Similarity=-0.154 Sum_probs=61.6
Q ss_pred cEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCC
Q 011368 255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 334 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~ 334 (487)
.+..++|+|+| .+.++ .+|.+.-.+..+... ..+-. .. . ... -.+ -....++.|.|+|.+.++ +||
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~-s~-t-~IG-~~G-w~~F~a~~fD~~G~LYav-~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMG-RA-K-KIG-NGG-WNQFQFLFFDPNGYLYAV-SKD 107 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHH-HC-E-EEE-CSC-GGGCSEEEECTTSCEEEE-ETT
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccc-cc-c-Eec-ccc-cccceEEEECCCCCEEEe-CCC
Confidence 46699999998 65555 777766555543211 11111 00 0 000 000 012578999999998888 779
Q ss_pred eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368 335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 395 (487)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~ 395 (487)
.|+-++-.+.+.. .-+.. ...+ ....-.++..+.+.|+|.+.++. |+.++
T Consensus 108 ~iyr~~pP~~~~~-~Wl~~-a~~v-------g~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 108 KLYKASPPQSDTD-NWIAR-ATEV-------GSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EEEEESCCCSTTC-CHHHH-SEEE-------ECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEEEeCCCcCCCC-ceecc-ccEe-------ccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 9988876431211 00000 0000 00000123589999999877666 77743
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.47 E-value=1.2 Score=39.12 Aligned_cols=147 Identities=10% Similarity=0.084 Sum_probs=70.5
Q ss_pred CCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----CeEEEEEc
Q 011368 215 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 283 (487)
Q Consensus 215 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~ 283 (487)
++++++.| .+ ..+.+||..+. ....+...+.....| ..+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~----~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGA----GLVVA--SG-VIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSC----EEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccc----eEEEE--CC-EEEEECCCCCCcccceEEEEeC
Confidence 46666665 32 35788888743 232221111111111 12222 55 777777654 45888998
Q ss_pred cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCCceeeeeeccccc
Q 011368 284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MNLKLWDIRMDSTPVATFKIHEHL 357 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~ 357 (487)
.+.+-. .... .+.. ......+.+ ++++++.|. + ..+.+||+.+ .. -..+......
T Consensus 183 ~~~~W~-----~~~~---~p~~-------r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~ 243 (301)
T 2vpj_A 183 HTGHWT-----NVTP---MATK-------RSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTP 243 (301)
T ss_dssp TTTEEE-----EECC---CSSC-------CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSC
T ss_pred CCCcEE-----eCCC---CCcc-------cccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCc
Confidence 875421 1111 1110 111122222 455666553 1 5789999875 32 2222211111
Q ss_pred ccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368 358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS 403 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-----g~i~iwd~~~~~ 403 (487)
. .. .+++.. +++.++.|+.+ ..+.+||+++.+
T Consensus 244 r----------~~---~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 244 R----------CY---VGATVL-RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp C----------BS---CEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred c----------cc---eeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1 00 122222 67777788765 357788887653
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.26 E-value=1.5 Score=38.83 Aligned_cols=167 Identities=6% Similarity=0.039 Sum_probs=90.7
Q ss_pred CCceeEEEeCCCCCEEEE-e---c----CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEe
Q 011368 204 DFNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS 273 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~ 273 (487)
...|.....+++.++++. | . .|.+.+|..+. + ..+. +++|...-..+... +...++++.+.
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~-~sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-K-VSQP-------IEGHAASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-T-EEEE-------ECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-c-ccce-------eeeeeeeeEEEecCCCCCCceEEEEEE
Confidence 456777788888887765 2 2 36778998883 2 2222 45665433222221 11113444443
Q ss_pred C---CCeEEEEEccCCc-cc-cccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 274 S---RGFVRLVDMRQSA-LC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 274 ~---dg~i~iwd~~~~~-~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
. .+.++|-++.... .. .-..+..+. ..++. .-..-.-++..|+.-..+..-+ .|.|.+||+.+ +.+
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi-~fppe------a~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~ 293 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTC 293 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEE-CCCTT------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCE
T ss_pred ecCCCcEEEEEEcCCCCCCCCCccccccee-eCCcc------ccCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcE
Confidence 3 2588888885431 00 000011111 00010 0123445677777666666554 49999999998 888
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+..-+.....+ +..+-+....-++.....|.|.--.++..
T Consensus 294 i~~nrIS~d~i---------------F~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 294 IYMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEECCSSCE---------------EEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEeccCCCce---------------EEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 87766555533 23344444444555667787777776654
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.88 E-value=2.4 Score=39.20 Aligned_cols=167 Identities=6% Similarity=0.038 Sum_probs=94.7
Q ss_pred CCceeEEEeCCCCCEEEE-e---c----CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEe
Q 011368 204 DFNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS 273 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~ 273 (487)
...|.....+++.++++. | . .|.+.+|..+.. . .+ .+++|...-..+... +....+++.+.
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~-sQ-------~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-V-SQ-------PIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-C-EE-------EECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-c-cc-------hheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 466777888899888765 2 2 467889988832 2 22 246775544333322 11113455554
Q ss_pred CC---CeEEEEEccCCc-cc-cccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368 274 SR---GFVRLVDMRQSA-LC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 347 (487)
Q Consensus 274 ~d---g~i~iwd~~~~~-~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 347 (487)
.. +.++|.++.... .. .-..+..+. ..++. .-..-..++..|+.-..+..-+ .|.|.+||+.+ +.+
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fppe------~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~ 292 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTC 292 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCTT------STTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCE
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeee-eCCcc------cccCceeEEEecccCCEEEEEecCceEEEEeccc-cee
Confidence 43 789999885431 00 000011111 00110 1123445777887766666655 49999999998 888
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
+..-+.....+ +..+-+....-++.....|.|.--.++..
T Consensus 293 i~~nrIs~~~i---------------F~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 293 IYMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEECCSSCE---------------EEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eeeecccCCce---------------EEecccCCCCcEEEEccCceEEEEEEccc
Confidence 77766555433 24444444455666668888777777654
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.57 E-value=6.2 Score=42.55 Aligned_cols=172 Identities=12% Similarity=0.075 Sum_probs=93.0
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-------CC
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-------RG 276 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------dg 276 (487)
..+|.-=.|-. .+.|+--.+..|+.|++.....+.++++-. ..+. +..|-.-..+++. ++++..+- .|
T Consensus 105 ~e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 105 TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVG 179 (1630)
T ss_pred CCCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccc
Confidence 34566666653 345555567799999997433333332111 1122 3456667778887 77765442 47
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc--C-CCCEEEEEe----CCeEEEEeCCCC--Cce
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA--N-DGQHLLSRD----YMNLKLWDIRMD--STP 347 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s--~-~~~~l~s~~----d~~i~iwd~~~~--~~~ 347 (487)
.+.+|..+.+.. +.+++| .+....+... + ....++.+. .+.+.|-++... +.+
T Consensus 180 ~mQLyS~er~~s-----Q~iegh-------------a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~ 241 (1630)
T 1xi4_A 180 AMQLYSVDRKVS-----QPIEGH-------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 241 (1630)
T ss_pred eeeeeecccccc-----hhhhHh-------------HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC
Confidence 888888876542 455554 3333333332 1 122222221 168888888542 111
Q ss_pred eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368 348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~ 404 (487)
...-+.-.-. ..+-..+|-. .++..|+.-..+..-+.-|.|++||+.++..
T Consensus 242 ~f~kk~~~~~---~~~~~~~Dfp---v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 242 PFPKKAVDVF---FPPEAQNDFP---VAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred CCcccccccc---CCcccccCcc---eEEEeccccCEEEEEecCceEEEEecccchh
Confidence 1100000000 0000111222 3788888888888899999999999999843
No 322
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.31 E-value=5.2 Score=40.60 Aligned_cols=172 Identities=10% Similarity=-0.039 Sum_probs=90.3
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011368 205 FNINSISNNSDCETFVSADDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 283 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 283 (487)
..|.++.-..+|++.+...+| +..++..++. ..+..+......-.-....|.++.-.++| .+.+ |+ ++.|..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWi-gt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWI-AT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEE-EE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEE-Ee-CCcHhhcCc
Confidence 468888888888776665544 5566654321 11222111000001123468888888887 5444 45 457899998
Q ss_pred cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC----Ccee---eeeecccc
Q 011368 284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD----STPV---ATFKIHEH 356 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~----~~~~---~~~~~~~~ 356 (487)
.+++.. .+.. ...... .....|.++...++|.+.+....+-|.++|..+. .... ..+.....
T Consensus 400 ~~~~~~-----~~~~-~~~~~~-----~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (758)
T 3ott_A 400 ATRQFI-----HYNI-VDNTGT-----YNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNG 468 (758)
T ss_dssp TTTEEE-----EEEE-ECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGT
T ss_pred CCCcEE-----Eeec-CCCcCC-----CCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccc
Confidence 876532 1111 000000 0124688888888876555443467888885420 0111 11111111
Q ss_pred cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
. ....|.++...++|.+.+.++..+-|..+|..++
T Consensus 469 l-----------~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~ 503 (758)
T 3ott_A 469 L-----------SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTR 503 (758)
T ss_dssp C-----------SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTT
T ss_pred c-----------ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC
Confidence 0 0012358888888887764444456888898765
No 323
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.06 E-value=5.8 Score=42.73 Aligned_cols=134 Identities=8% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCceeEEEeCCCCCEEEE-e-------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEe
Q 011368 204 DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS 273 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s-~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~ 273 (487)
...|.....+++.++++. | -.|.+.+|.++.... +.++||...-..+... +..+.+++.+.
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s---------Q~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---------QPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc---------hhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 456777777888888764 2 247788888873221 2346665543333322 22113444333
Q ss_pred C---CCeEEEEEccCC-ccccccceeecccccccCccc-ccc--ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368 274 S---RGFVRLVDMRQS-ALCDHSARILRDAAESHGSKS-FFT--EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 345 (487)
Q Consensus 274 ~---dg~i~iwd~~~~-~~~~~~~~~~~~h~~~~~~~~-~~~--~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~ 345 (487)
. .+.++|-++... ... ..|.. .... .++ .-..-..++..++.-..+..-+ .|.|.+||+.+ +
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~----~~f~k-----k~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~ 290 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGN----QPFPK-----KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-G 290 (1630)
T ss_pred ecCCCceEEEEecCCCccCC----CCCcc-----ccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc-c
Confidence 2 268888888543 100 11111 0000 000 0112334667776655555544 49999999998 7
Q ss_pred ceeeeeecccc
Q 011368 346 TPVATFKIHEH 356 (487)
Q Consensus 346 ~~~~~~~~~~~ 356 (487)
.++..-+....
T Consensus 291 ~~i~~~ris~~ 301 (1630)
T 1xi4_A 291 TCIYMNRISGE 301 (1630)
T ss_pred hhhhhccccCC
Confidence 76665554443
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.83 E-value=4.4 Score=38.11 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCC
Q 011368 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (487)
Q Consensus 33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 64 (487)
...+.|+|.|+|+++++-...+.|++++..++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 35679999999997776544346877765433
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.64 E-value=3.4 Score=36.18 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=16.4
Q ss_pred CCCEEEEEcCCC-----cEEEEEeCCC
Q 011368 381 DGLHFATGSYSN-----LLRIFSHGVG 402 (487)
Q Consensus 381 d~~~l~sg~~dg-----~i~iwd~~~~ 402 (487)
+++.++.|+.++ .+.+||+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 677778887653 4888888766
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.45 E-value=3.7 Score=36.03 Aligned_cols=23 Identities=0% Similarity=0.189 Sum_probs=17.0
Q ss_pred CCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368 381 DGLHFATGSYS-----NLLRIFSHGVGS 403 (487)
Q Consensus 381 d~~~l~sg~~d-----g~i~iwd~~~~~ 403 (487)
++++++.|+.+ ..+.+||+.+.+
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 67788888854 468888888764
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.38 E-value=3.2 Score=37.19 Aligned_cols=25 Identities=8% Similarity=-0.124 Sum_probs=18.3
Q ss_pred CCEEEEe-cCCeEEEEEccCCCceeE
Q 011368 216 CETFVSA-DDLRINLWNLEISDQCFN 240 (487)
Q Consensus 216 ~~~l~s~-~d~~i~iwd~~~~~~~~~ 240 (487)
+..++++ .++.+.-.|+.++....+
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEE
Confidence 4566677 899999999986655443
No 328
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.33 E-value=5.4 Score=37.57 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=35.2
Q ss_pred CceeEEEeCCCCC--EEEEecCCeEEEEEccCCCceeEEeecCCCCCC----CCCCcEEEEEEecC
Q 011368 205 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI 264 (487)
Q Consensus 205 ~~v~~i~~s~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~p~ 264 (487)
..-+.|+|.|++. ++++-..|.|++++.........+.+++..... ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999985 555558899999975422111111111111111 12456889999996
No 329
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.19 E-value=4.2 Score=35.83 Aligned_cols=104 Identities=12% Similarity=0.039 Sum_probs=57.4
Q ss_pred EeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC--CeEEEEEccCC
Q 011368 211 SNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--GFVRLVDMRQS 286 (487)
Q Consensus 211 ~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--g~i~iwd~~~~ 286 (487)
+++++++.|+-. ....|...++. ++....+. . +... ..+.|++ ..|+-...+ ..|..-++..+
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~-g~~~~~l~-------~---~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTA-SQSEALFY-------D---CNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETT-TTEEEEEE-------C---SCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSSC
T ss_pred EeeEECCEEEEEeCCCceEEEEECC-CCCEEEEe-------C---CCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCCC
Confidence 456778888766 36778777776 33322221 1 1112 2356888 777776543 35555566554
Q ss_pred ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC---CeEEEEeCCCCCceeeee
Q 011368 287 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATF 351 (487)
Q Consensus 287 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d---~~i~iwd~~~~~~~~~~~ 351 (487)
.. +.+.. ..+ ..|+|++++|.-+++ +.|..-++. +.....+
T Consensus 218 ~~-----~~Lt~---------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l 261 (302)
T 3s25_A 218 NP-----VVLTE---------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKEL 261 (302)
T ss_dssp CC-----EECSC---------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEE
T ss_pred Ce-----EEEeC---------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEe
Confidence 32 22222 223 347888998886643 556666654 4444444
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.96 E-value=5.7 Score=36.76 Aligned_cols=216 Identities=13% Similarity=0.084 Sum_probs=123.8
Q ss_pred cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH 203 (487)
Q Consensus 124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (487)
+|..+.++.-. ..++.++|+++....+.. ..
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~------------------------------------------------~~ 104 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAH------------------------------------------------TM 104 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEE------------------------------------------------EC
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcce------------------------------------------------ec
Confidence 35556666554 679999999987655442 12
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-------CC
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-------RG 276 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------dg 276 (487)
...|..=.|-. .+.|+--.+..|+-|++.....+.++++-. ..+. ...|-.-..+++. ++++..+- .|
T Consensus 105 ~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 105 TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVG 179 (494)
T ss_dssp SSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEE
T ss_pred CCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCC-CeEEEEeecccCCcccc
Confidence 33455556642 356666677899999998555566554322 1222 3567777788888 77775542 36
Q ss_pred eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC---CEEEEEe----CCeEEEEeCCCCCceee
Q 011368 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSRD----YMNLKLWDIRMDSTPVA 349 (487)
Q Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s~~----d~~i~iwd~~~~~~~~~ 349 (487)
.+.+|..+.+.. +.+++| .+....+....+. ..++.+. .+.+.|-++......-.
T Consensus 180 ~mQLYS~er~~s-----Q~ieGh-------------aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~ 241 (494)
T 1bpo_A 180 AMQLYSVDRKVS-----QPIEGH-------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 241 (494)
T ss_dssp EEEEEESTTCCE-----EEECCS-------------EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred eEEEeecccccc-----chheee-------------eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence 788998877542 566664 4444444333211 1222232 17899998854210000
Q ss_pred eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368 350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 416 (487)
.+......+ -..+...+|-- .++..|+.-..+..-+.-|.|++||++++. ....-+-..+++
T Consensus 242 ~f~kk~vdv-~fppe~~~DFP---vamqvs~kygviyviTK~G~i~lyDleTgt-~i~~nrIs~~~i 303 (494)
T 1bpo_A 242 PFPKKAVDV-FFPPEAQNDFP---VAMQISEKHDVVFLITKYGYIHLYDLETGT-CIYMNRISGETI 303 (494)
T ss_dssp CCCCEEEEC-CCCTTSTTCCE---EEEEEETTTTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCE
T ss_pred Cccceeeee-eCCcccccCce---eEEEecccCCEEEEEecCceEEEEecccce-eeeeecccCCce
Confidence 110000000 00000111222 488999988899999999999999999993 344444444433
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.92 E-value=6.1 Score=34.69 Aligned_cols=147 Identities=11% Similarity=0.092 Sum_probs=70.4
Q ss_pred CCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----CeEEEEEc
Q 011368 215 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 283 (487)
Q Consensus 215 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~ 283 (487)
++++++.| .+ ..+.+||..+. ....+. .+......-..+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVA----PMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTT--EEEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCC--eEeECC----CCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence 56666665 32 46788888733 233221 11111111122222 55 777777654 45888888
Q ss_pred cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCCceeeeeeccccc
Q 011368 284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MNLKLWDIRMDSTPVATFKIHEHL 357 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~ 357 (487)
.+.+-. ... ..+.. ......+.+ ++++++.|. + ..+.+||+.+ .. -..+......
T Consensus 192 ~~~~W~-----~~~---~~p~~-------r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~ 252 (308)
T 1zgk_A 192 ERNEWR-----MIT---AMNTI-------RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET-ET-WTFVAPMKHR 252 (308)
T ss_dssp TTTEEE-----ECC---CCSSC-------CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEECCCCSSC
T ss_pred CCCeEe-----eCC---CCCCc-------cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC-Cc-EEECCCCCCC
Confidence 775421 111 01111 111222333 556666553 1 5789999875 32 2222111111
Q ss_pred ccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368 358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS 403 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-----g~i~iwd~~~~~ 403 (487)
+ .. .+++.. ++++++.|+.+ ..+.+||+.+.+
T Consensus 253 r----------~~---~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 253 R----------SA---LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C----------BS---CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred c----------cc---eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 00 133332 67777778754 357788887653
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=90.88 E-value=7.8 Score=33.91 Aligned_cols=27 Identities=7% Similarity=0.246 Sum_probs=18.1
Q ss_pred CCcEEEEEeCC------CcEEEEEccccceeEe
Q 011368 126 NGSMFILSTND------KTIKLWKVRDQKVKKI 152 (487)
Q Consensus 126 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~ 152 (487)
++.+++.|+.+ ..+.+||..+.+....
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 56677777654 4578888887765543
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=90.86 E-value=8.8 Score=34.49 Aligned_cols=27 Identities=4% Similarity=-0.144 Sum_probs=17.0
Q ss_pred CCCCEEEEEcCCC------cEEEEEeCCCCcee
Q 011368 380 GDGLHFATGSYSN------LLRIFSHGVGSAGG 406 (487)
Q Consensus 380 ~d~~~l~sg~~dg------~i~iwd~~~~~~~~ 406 (487)
.++++++.|+.++ .|.++++++++...
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 4678888888653 35666887765443
No 334
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=90.68 E-value=20 Score=38.30 Aligned_cols=121 Identities=9% Similarity=0.118 Sum_probs=69.8
Q ss_pred CEEEEEe----------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeE
Q 011368 267 NLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 336 (487)
Q Consensus 267 ~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i 336 (487)
.++++|+ ..|.|.+|++..+++ +.+.. ....+.+++++-- +| +|++|-...|
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-----~lv~~-----------~~v~g~v~al~~~-~g-~Lla~ig~~l 906 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-----QTVAE-----------KEVKGAVYSMVEF-NG-KLLASINSTV 906 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-----EEEEE-----------EEESSCEEEEEEE-TT-EEEEEETTEE
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECCEE-----EEEEE-----------EEcCCcCEEEeee-CC-EEEEEcCCEE
Confidence 6888886 247899999875432 22211 1124678887744 34 6666666899
Q ss_pred EEEeCCCCCceee-eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc--C
Q 011368 337 KLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--K 413 (487)
Q Consensus 337 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~ 413 (487)
++|++.. .+.+. ....... + ..+.....+.+|+.|..-..|.+...+........+..+ .
T Consensus 907 ~vy~l~~-~~~L~~~~~~~~~-------------i---~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~ 969 (1158)
T 3ei3_A 907 RLYEWTT-EKELRTECNHYNN-------------I---MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP 969 (1158)
T ss_dssp EEEEECT-TSCEEEEEEECCC-------------S---CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSC
T ss_pred EEEECCC-CceEEEEeecccc-------------E---EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccc
Confidence 9999975 43333 1111111 0 122333357789999888888887766544444444433 3
Q ss_pred CccccceEe
Q 011368 414 NENRKPILQ 422 (487)
Q Consensus 414 ~~v~~~~~~ 422 (487)
.+++++.+-
T Consensus 970 ~~vta~~~l 978 (1158)
T 3ei3_A 970 NWMSAVEIL 978 (1158)
T ss_dssp BCEEEEEEE
T ss_pred ccEEEEEEE
Confidence 444555554
No 335
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.48 E-value=19 Score=36.35 Aligned_cols=163 Identities=9% Similarity=-0.024 Sum_probs=87.3
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEEEccCC----Ccee---EEeecCCCCCCC-CCCcEEEEEEecCCCCEEEEEeCC
Q 011368 204 DFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCF---NIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~----~~~~---~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d 275 (487)
...|.++...+++++.+....+-+.++|..+. ...+ ..+.. ..+ ....|.++...++| .+.+.++..
T Consensus 418 ~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~i~~i~~d~~g-~lWi~~~t~ 492 (758)
T 3ott_A 418 TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV----HNGLSGMFINQIIPDNEG-NVWVLLYNN 492 (758)
T ss_dssp SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG----GGTCSCSCEEEEEECTTS-CEEEEETTC
T ss_pred CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccc----ccccccceeeeEEEcCCC-CEEEEccCC
Confidence 34588888888877666556666788886521 0111 11100 011 22458999999988 766644444
Q ss_pred CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccc
Q 011368 276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE 355 (487)
Q Consensus 276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~ 355 (487)
+.|..+|..+++.. .+.. .. +. ....+.++....+|.+.++.. +-+..|+..+ .. ...+.. .
T Consensus 493 ~Gl~~~d~~~~~~~-----~~~~-~~-------~~-~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~-~~-~~~~~~-~ 554 (758)
T 3ott_A 493 KGIDKINPRTREVT-----KLFA-DE-------LT-GEKSPNYLLCDEDGLLWVGFH-GGVMRINPKD-ES-QQSISF-G 554 (758)
T ss_dssp SSEEEEETTTTEEE-----EECT-TT-------SC-GGGCEEEEEECTTSCEEEEET-TEEEEECC---CC-CCBCCC-C
T ss_pred CCcEEEeCCCCceE-----EecC-CC-------cC-CCcccceEEECCCCCEEEEec-CceEEEecCC-Cc-eEEecc-c
Confidence 55888898775432 1111 00 00 024577888888888776554 5688888764 22 222211 1
Q ss_pred ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368 356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~ 403 (487)
... ... +.++... +|. |-.++.+| |..+|..+.+
T Consensus 555 gl~--------~~~---i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~ 588 (758)
T 3ott_A 555 SFS--------NNE---ILSMTCV-KNS-IWVSTTNG-LWIIDRKTMD 588 (758)
T ss_dssp C-----------CC---EEEEEEE-TTE-EEEEESSC-EEEEETTTCC
T ss_pred CCC--------ccc---eEEEEEC-CCC-EEEECCCC-eEEEcCCCce
Confidence 100 011 2356553 565 44455555 7778887653
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.85 E-value=15 Score=32.99 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=63.9
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
.....|+| .|+|.++++--..|.|++++..+++...+....
T Consensus 32 ~~P~~ia~--~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~------------------------------------- 72 (347)
T 3das_A 32 NSPWGLAP--LPGGDLLVSSRDEATITRVDAKTGRKTELGEVP------------------------------------- 72 (347)
T ss_dssp SSEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECT-------------------------------------
T ss_pred CCceEEEE--cCCCcEEEEEecCCEEEEEECCCCcEeeecccC-------------------------------------
Confidence 45689999 578887666655899998876555432221100
Q ss_pred ceeeeecccCCCceeEEEeCCC---CCEEEEe----cCCeEEEEEccCCC-------ceeEEeecCCCCCCCCCCcEEEE
Q 011368 194 MATKVYPHAHDFNINSISNNSD---CETFVSA----DDLRINLWNLEISD-------QCFNIVDMKPSNMDDLTEVITSA 259 (487)
Q Consensus 194 ~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~----~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~v 259 (487)
............|+++|+ +..|+.+ .++.|.-|...... ....++...+. -..|. ...|
T Consensus 73 ----~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~--g~~l 145 (347)
T 3das_A 73 ----GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHN--GGRI 145 (347)
T ss_dssp ----TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCC--CCCE
T ss_pred ----ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCcc--Cccc
Confidence 001334567889999995 3444432 45566666665311 11122211111 12343 3579
Q ss_pred EEecCCCCEEEEEeC
Q 011368 260 EFHPIYCNLLAYSSS 274 (487)
Q Consensus 260 ~~~p~~~~~l~~~~~ 274 (487)
.|.|+| .++++.+.
T Consensus 146 ~fgpDG-~Lyvt~Gd 159 (347)
T 3das_A 146 AFGPDK-MLYAGTGE 159 (347)
T ss_dssp EECTTS-CEEEECBC
T ss_pred cCCCCC-CEEEEECC
Confidence 999999 76666543
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=85.12 E-value=19 Score=31.48 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=34.6
Q ss_pred CCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----CeEEEEEc
Q 011368 215 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 283 (487)
Q Consensus 215 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~ 283 (487)
++++++.| .+ ..+.+||+.+. ....+. .+......-..+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMIT----AMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCC----CCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence 56666665 43 45888888733 333321 11111111122222 55 777777664 46889998
Q ss_pred cCCc
Q 011368 284 RQSA 287 (487)
Q Consensus 284 ~~~~ 287 (487)
.+.+
T Consensus 239 ~~~~ 242 (308)
T 1zgk_A 239 ETET 242 (308)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8754
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=84.30 E-value=8.3 Score=34.49 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=22.1
Q ss_pred CcEEEEEeCCCcEEEEEccccceeEee
Q 011368 127 GSMFILSTNDKTIKLWKVRDQKVKKIK 153 (487)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~ 153 (487)
+..++.++.||.|.-.|..+|+.+...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~ 36 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSI 36 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 347888999999999999998877654
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.64 E-value=17 Score=34.81 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=53.3
Q ss_pred CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeE--EeecC---CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368 205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMK---PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~--~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 277 (487)
.....+..+|||++++.+ -+.++.++|+++-...+. +++.. ....+ ..-.....+|.++| ....+.--|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 344678889999999886 799999999984211000 00000 00111 23456889999998 76667778999
Q ss_pred EEEEEccCC
Q 011368 278 VRLVDMRQS 286 (487)
Q Consensus 278 i~iwd~~~~ 286 (487)
|.-|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999999763
No 340
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.74 E-value=28 Score=31.63 Aligned_cols=157 Identities=8% Similarity=0.062 Sum_probs=84.2
Q ss_pred eEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEEEe---cC---CCCEEEEEe-CCCeEEEEEccCCccccccceeec
Q 011368 226 RINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFH---PI---YCNLLAYSS-SRGFVRLVDMRQSALCDHSARILR 297 (487)
Q Consensus 226 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~---p~---~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 297 (487)
.|.+||+.+.. +.++.+.++..... ....+..+.+. |. +..+.+.+. ..+.|.++|+.+++.. +...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence 56677777541 55555554432333 24568888888 22 113333333 4678999999998765 4332
Q ss_pred ccccccCcccc--cccc----ccceeEEEEcCC----CCEEEEEeCCeEEEEeCCCC----Cc---eeeeeecccccccc
Q 011368 298 DAAESHGSKSF--FTEI----IASISDIKFAND----GQHLLSRDYMNLKLWDIRMD----ST---PVATFKIHEHLRPK 360 (487)
Q Consensus 298 ~h~~~~~~~~~--~~~~----~~~v~~v~~s~~----~~~l~s~~d~~i~iwd~~~~----~~---~~~~~~~~~~~~~~ 360 (487)
. ...+..... ..|. ...+..|+++|+ ++.|.-..-..-++|.+.+. .. .+..+ +.....
T Consensus 199 ~-~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~-- 274 (381)
T 3q6k_A 199 P-TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKY-- 274 (381)
T ss_dssp G-GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTT--
T ss_pred C-CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCC--
Confidence 2 222221111 1111 247889999998 77777654333344444320 11 11111 111100
Q ss_pred cccccCCCCcceeeEEEEc-CCCCEEEEEcCCCcEEEEEeCC
Q 011368 361 LCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~s-~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
.++ ..+++. .+|.++++--..+.|..|+..+
T Consensus 275 ------s~~----~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 275 ------NDA----IALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ------CCE----EEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred ------CCc----ceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 011 256775 5777777777888999999875
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.15 E-value=43 Score=33.42 Aligned_cols=157 Identities=10% Similarity=0.027 Sum_probs=76.6
Q ss_pred CCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC--eEEEEEccC
Q 011368 215 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ 285 (487)
Q Consensus 215 ~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~iwd~~~ 285 (487)
++++++.| .+ ..+.+||..+. .+..+. .+...... .+++...++ .+++.|+.++ .+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~--~W~~~~----~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR--EWSMIK----SLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT--EEEECC----CCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC--cEEECC----CCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 56677765 32 35778888742 333221 11111111 122222366 7888887654 688999888
Q ss_pred CccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEeC--------CeEEEEeCCCCCc--e--eeeee
Q 011368 286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY--------MNLKLWDIRMDST--P--VATFK 352 (487)
Q Consensus 286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~d--------~~i~iwd~~~~~~--~--~~~~~ 352 (487)
..-. ........+. .......+.+..+ +++++.|+. +.+.+||+.+... . -..+.
T Consensus 523 ~~W~-----~~~~~g~~p~-------~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~ 590 (695)
T 2zwa_A 523 EIFK-----DVTPKDEFFQ-------NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL 590 (695)
T ss_dssp TEEE-----ECCCSSGGGG-------SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEE
T ss_pred CceE-----EccCCCCCCC-------cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcC
Confidence 5421 1110000010 0122234555555 555555531 4688999876321 0 11111
Q ss_pred cc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC--------CcEEEEEeCCCCc
Q 011368 353 IH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSA 404 (487)
Q Consensus 353 ~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d--------g~i~iwd~~~~~~ 404 (487)
.. ...+. - .+++...++++++.|+.+ ..+.+||+.+..-
T Consensus 591 ~~p~~~R~----------~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 591 QHPLFQRY----------G---SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp ECGGGCCB----------S---CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred CCCCCCcc----------c---ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 11 11110 0 134444347777878743 4688999887643
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.07 E-value=26 Score=36.56 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=29.6
Q ss_pred cEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368 255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 289 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 289 (487)
.+.+++..++. .++++-+.|+++|+|++.+++++
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeE
Confidence 56777888887 89999999999999999998765
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.17 E-value=30 Score=32.52 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCC-EEEEEeCCCeEEEEEcc
Q 011368 255 VITSAEFHPIYCN-LLAYSSSRGFVRLVDMR 284 (487)
Q Consensus 255 ~v~~v~~~p~~~~-~l~~~~~dg~i~iwd~~ 284 (487)
..+.|+|.|+| . .|+++...|.|++++..
T Consensus 15 ~P~~~a~~pdG-~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDG-SQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSS-SCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCC-CeEEEEEeCCceEEEEeCC
Confidence 45889999998 5 46666788999999754
No 344
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=79.37 E-value=30 Score=29.88 Aligned_cols=149 Identities=7% Similarity=0.004 Sum_probs=67.0
Q ss_pred CCcEEEEEeCC-----CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc-eeeeeeeeccceeeee
Q 011368 126 NGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTENMATKVY 199 (487)
Q Consensus 126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 199 (487)
++.+++.|+.+ ..+.+||..+.+..............++.. .++.++..++..... ......++.....-..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 46677777643 358888988877666544332211111211 134444444322211 1112222221111100
Q ss_pred ---cccCCCceeEEEeCCCCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368 200 ---PHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 270 (487)
Q Consensus 200 ---~~~~~~~v~~i~~s~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 270 (487)
+.........+.+ ++++++.| .+ ..+.+||+.+. ....+.. +.........+.+ ++ .+++
T Consensus 190 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~----~p~~r~~~~~~~~--~~-~i~v 258 (301)
T 2vpj_A 190 VTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD--SWTTVTS----MTTPRCYVGATVL--RG-RLYA 258 (301)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--EEEEECC----CSSCCBSCEEEEE--TT-EEEE
T ss_pred CCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC--cEEECCC----CCCcccceeEEEE--CC-EEEE
Confidence 0111111122222 56677776 43 56889998743 3333211 1111111122222 55 7777
Q ss_pred EEeCC-----CeEEEEEccCCc
Q 011368 271 YSSSR-----GFVRLVDMRQSA 287 (487)
Q Consensus 271 ~~~~d-----g~i~iwd~~~~~ 287 (487)
.|+.+ ..+.+||+++.+
T Consensus 259 ~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 259 IAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBEEEEEEEETTTTE
T ss_pred EcCcCCCcccccEEEEcCCCCe
Confidence 77765 357788887754
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=78.40 E-value=57 Score=32.54 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=38.5
Q ss_pred CCCEEEEe-cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC-CCCEEEEEeC--C-----CeEEEEEc
Q 011368 215 DCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI-YCNLLAYSSS--R-----GFVRLVDM 283 (487)
Q Consensus 215 ~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~--d-----g~i~iwd~ 283 (487)
++++++.| .++ .+.+||..+. .+..+... ..+......-.++.+... + .+++.|+. + ..+.+||+
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~-g~~p~~r~~~~a~v~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~ 575 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEE--IFKDVTPK-DEFFQNSLVSAGLEFDPVSK-QGIILGGGFMDQTTVSDKAIIFKY 575 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTT--EEEECCCS-SGGGGSCCBSCEEEEETTTT-EEEEECCBCTTSSCBCCEEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEEECCCC--ceEEccCC-CCCCCcccceeEEEEeCCCC-EEEEECCcCCCCCeeeCcEEEEEc
Confidence 67787776 433 6888888743 33332110 001111112233555655 5 67777775 2 46889999
Q ss_pred cCCc
Q 011368 284 RQSA 287 (487)
Q Consensus 284 ~~~~ 287 (487)
.+..
T Consensus 576 ~~~~ 579 (695)
T 2zwa_A 576 DAEN 579 (695)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 8865
No 346
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=75.29 E-value=40 Score=29.13 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=17.0
Q ss_pred CCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368 381 DGLHFATGSYS-----NLLRIFSHGVGS 403 (487)
Q Consensus 381 d~~~l~sg~~d-----g~i~iwd~~~~~ 403 (487)
++++++.|+.+ ..+.+||+.+..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 67777888765 368899988763
No 347
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=74.43 E-value=43 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=16.7
Q ss_pred CCCEEEEEcCCC-----cEEEEEeCCCC
Q 011368 381 DGLHFATGSYSN-----LLRIFSHGVGS 403 (487)
Q Consensus 381 d~~~l~sg~~dg-----~i~iwd~~~~~ 403 (487)
+++.++.|+.++ .+.+||+.+..
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 677777887654 47888887763
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=71.31 E-value=14 Score=35.41 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=49.8
Q ss_pred cceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC-----Cce-------eeeeecccccccccccccCCCCcceeeEEEEc
Q 011368 314 ASISDIKFANDGQHLLSRD--YMNLKLWDIRMD-----STP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 379 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 379 (487)
.....+..+|||++++++. +.++.++|++.. .+. +....... +....+|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl----------------GPlHt~Fd 386 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL----------------GPLHTTFD 386 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS----------------CEEEEEEC
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC----------------cccEEEEC
Confidence 4556789999999999875 489999998731 111 11111111 22589999
Q ss_pred CCCCEEEEEcCCCcEEEEEeCC
Q 011368 380 GDGLHFATGSYSNLLRIFSHGV 401 (487)
Q Consensus 380 ~d~~~l~sg~~dg~i~iwd~~~ 401 (487)
++|.-..+---|..|.-|++..
T Consensus 387 ~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 387 GRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SSSEEEEEETTTTEEEEEEHHH
T ss_pred CCCceEeeeeecceEEEEeccH
Confidence 9995455556899999999975
No 349
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=68.63 E-value=59 Score=28.26 Aligned_cols=64 Identities=3% Similarity=0.031 Sum_probs=34.1
Q ss_pred CCCEEEEe-c-C-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-----eEEEEE
Q 011368 215 DCETFVSA-D-D-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVD 282 (487)
Q Consensus 215 ~~~~l~s~-~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~iwd 282 (487)
++++++.| . + ..+.+||..+. ....+. .+......-.++.+ ++ .+++.|+.++ .+.+||
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELA----PMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECC----CCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECC----CCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEE
Confidence 45666666 4 2 46888888743 333221 11111111122222 55 7788887654 578888
Q ss_pred ccCCc
Q 011368 283 MRQSA 287 (487)
Q Consensus 283 ~~~~~ 287 (487)
+.+.+
T Consensus 219 ~~~~~ 223 (315)
T 4asc_A 219 ITDNK 223 (315)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 88754
No 350
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=63.68 E-value=74 Score=27.64 Aligned_cols=24 Identities=4% Similarity=-0.038 Sum_probs=16.0
Q ss_pred cCCCCEEEEEeC------CCeEEEEEccCCc
Q 011368 263 PIYCNLLAYSSS------RGFVRLVDMRQSA 287 (487)
Q Consensus 263 p~~~~~l~~~~~------dg~i~iwd~~~~~ 287 (487)
.++ .+++.|+. -..+.+||+.+.+
T Consensus 157 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 157 HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp ETT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred ECC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 355 67777764 2358899988754
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=58.32 E-value=89 Score=26.82 Aligned_cols=146 Identities=10% Similarity=-0.035 Sum_probs=75.8
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368 205 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 284 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 284 (487)
..|..++...+...++ . |+.|+.|-....++.-. .......|..++..... .++ -. ||.|..|-..
T Consensus 102 ~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~--------~~~~~~~i~~i~~G~~~--~~~-l~-~G~v~~wG~n 167 (282)
T 3qhy_B 102 SGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTV--------PAEAQSGVTALDGGVYT--ALA-VK-NGGVIAWGDN 167 (282)
T ss_dssp SSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSC--------CGGGGSSEEEEEECSSE--EEE-EE-TTEEEEEECC
T ss_pred CCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCC--------CccCCCCeEEEEcccCE--EEE-EE-CCEEEEecCC
Confidence 3577777664443333 4 99999998765444210 01123457777655442 233 33 7999999655
Q ss_pred CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccc
Q 011368 285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
....+. . .. .....|..++...+. .++. .+|.|+.|=....++.-.......
T Consensus 168 ~~gqlg----~-p~------------~~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~p~~~~~--------- 219 (282)
T 3qhy_B 168 YFGQTT----V-PA------------EAQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTVPTEALS--------- 219 (282)
T ss_dssp TTSTTS----C-CG------------GGGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGGGGS---------
T ss_pred CCCCCC----C-ce------------ecCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCCCcccCC---------
Confidence 422110 0 00 002457777766543 3334 689999997654332211000000
Q ss_pred cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368 365 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 402 (487)
Q Consensus 365 ~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~ 402 (487)
.+..++-..+.. ++ -. ||.|+.|-....
T Consensus 220 -------~v~~i~~G~~h~-~a-l~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 220 -------GVSAIASGEWYS-LA-LK-NGKVIAWGSSRT 247 (282)
T ss_dssp -------SCCEEEECSSCE-EE-EE-TTEEEEESTTCC
T ss_pred -------CceEEEcCCCEE-EE-EE-CCEEEEecCCCC
Confidence 123555543332 33 33 899999987654
No 352
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=54.73 E-value=63 Score=31.14 Aligned_cols=61 Identities=15% Similarity=-0.010 Sum_probs=38.3
Q ss_pred cceeEEEEcCCCCEEEEEeC-------------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC
Q 011368 314 ASISDIKFANDGQHLLSRDY-------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 380 (487)
Q Consensus 314 ~~v~~v~~s~~~~~l~s~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 380 (487)
.....|.|.++|.+.++.+. +.+..++..+ ++....+...... .++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 45788999999987774321 1566666544 4544444333211 126999999
Q ss_pred CCCEEEEEc
Q 011368 381 DGLHFATGS 389 (487)
Q Consensus 381 d~~~l~sg~ 389 (487)
|++.|.++-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999887653
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=51.43 E-value=1.2e+02 Score=26.07 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=58.7
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368 205 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 284 (487)
Q Consensus 205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 284 (487)
..|..++...... ++. .|+.|+.|-....++.-. + ......|..++..... .++. . ||.|..|-..
T Consensus 24 ~~i~~ia~G~~h~-~~l-~~G~v~~wG~n~~Gqlg~-----p---~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n 89 (282)
T 3qhy_B 24 SGVDAIAGGYFHG-LAL-KGGKVLGWGANLNGQLTM-----P---AATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGN 89 (282)
T ss_dssp SSCCEEEECSSEE-EEE-ETTEEEEEECCSSSTTSC-----C---GGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECC
T ss_pred CCCcEEEeCCCeE-EEE-ECCEEEEEeCCCCCCCCC-----C---ccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCC
Confidence 3577777764332 233 389999998775444210 0 0112356677765543 3343 4 8999999655
Q ss_pred CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCC
Q 011368 285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 343 (487)
Q Consensus 285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~ 343 (487)
....+. . |.. ....|..++...+..++++ +|.|+.|=...
T Consensus 90 ~~Gqlg----~-------P~~------~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~ 129 (282)
T 3qhy_B 90 EDGQTT----V-------PAE------ARSGVDAIAAGAWASYALK--DGKVIAWGDDS 129 (282)
T ss_dssp TTSTTC----C-------CGG------GSSSEEEEEEETTEEEEEE--TTEEEEEECCT
T ss_pred CCCCCC----C-------Ccc------cCCCeEEEECcCCEEEEEe--CCeEEEecCCC
Confidence 422110 0 000 0236777777655434444 89999997654
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.75 E-value=2.4e+02 Score=29.41 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=30.3
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEee
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 153 (487)
..|.+++. .++..++++-+.|+++|+|++.++++....
T Consensus 236 ~~~~~~~~--~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEE--ETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEee--cCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 34556665 467789999999999999999999877654
No 355
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=49.02 E-value=1.3e+02 Score=25.99 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=32.4
Q ss_pred CCCEEEEe-c------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----CeEEEEE
Q 011368 215 DCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVD 282 (487)
Q Consensus 215 ~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd 282 (487)
++++++.| . -..+.+||..+. ....+.. +.........+.+ ++ .+++.|+.+ ..+.+||
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~----~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAP----MKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECC----CSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCC----CCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEE
Confidence 56666665 3 235888888743 3333211 1111111122222 45 777777653 3466788
Q ss_pred ccCCc
Q 011368 283 MRQSA 287 (487)
Q Consensus 283 ~~~~~ 287 (487)
+.+.+
T Consensus 229 ~~~~~ 233 (318)
T 2woz_A 229 LKTNK 233 (318)
T ss_dssp TTTCC
T ss_pred CCCCe
Confidence 77653
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=48.68 E-value=1.6e+02 Score=26.74 Aligned_cols=126 Identities=5% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCceeEEEeC---CC----CCEEEEe--cCCeEEEEEccCCCceeEEeecC--CC-----CCCCC----CCcEEEEEEec
Q 011368 204 DFNINSISNN---SD----CETFVSA--DDLRINLWNLEISDQCFNIVDMK--PS-----NMDDL----TEVITSAEFHP 263 (487)
Q Consensus 204 ~~~v~~i~~s---~~----~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~--~~-----~~~~~----~~~v~~v~~~p 263 (487)
...+..+++. |+ +.++..+ ....|.++|+. .++..++.+.. +. ...+. ...+..++.+|
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~-~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp 229 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK-KQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD 229 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT-TTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC-CCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecC
Confidence 3456677765 22 3444445 57789999999 45566654211 00 00111 24688899998
Q ss_pred C----CCCEEEEEeCCCeEEEEEccCCcccc----ccceeecccccccCccccccccccceeEEEEc-CCCCEEEEE-eC
Q 011368 264 I----YCNLLAYSSSRGFVRLVDMRQSALCD----HSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR-DY 333 (487)
Q Consensus 264 ~----~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~s~-~d 333 (487)
+ + ..|+...-.+. ++|.+.+..+.. ..++.+.. .+-...-..+++. .+|.++++- ..
T Consensus 230 ~~~~~~-~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-----------kg~~s~~~~~~~D~~~G~ly~~~~~~ 296 (381)
T 3q6k_A 230 RDSEGN-RPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-----------RGKYNDAIALAYDPKTKVIFFAEANT 296 (381)
T ss_dssp CCTTSC-CEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-----------CCTTCCEEEEEECTTTCEEEEEESSS
T ss_pred CcCCCC-eEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-----------cCCCCCcceEEEeCCCCeEEEEeccC
Confidence 7 5 66666655542 455554422111 11111111 0001233455665 566555554 34
Q ss_pred CeEEEEeCCC
Q 011368 334 MNLKLWDIRM 343 (487)
Q Consensus 334 ~~i~iwd~~~ 343 (487)
+.|..|+...
T Consensus 297 ~aI~~w~~~~ 306 (381)
T 3q6k_A 297 KQVSCWNTQK 306 (381)
T ss_dssp SEEEEEETTS
T ss_pred CeEEEEeCCC
Confidence 8999999863
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=48.39 E-value=2.2e+02 Score=28.41 Aligned_cols=33 Identities=3% Similarity=-0.134 Sum_probs=23.1
Q ss_pred cEEEEE-EcCCCCEEEEEe-cC----CcEEEEEeeCCcC
Q 011368 34 IVSAIE-FDKTGDYLAVGD-RG----GRVILFETVGGKN 66 (487)
Q Consensus 34 ~V~~~~-~s~~~~~l~~g~-~d----g~i~iw~~~~~~~ 66 (487)
....+. ++|++++++.+- .. ..++++|+.+++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~ 168 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDF 168 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEE
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCc
Confidence 344555 899998877653 22 3689999988864
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=46.47 E-value=87 Score=30.42 Aligned_cols=59 Identities=15% Similarity=0.001 Sum_probs=36.8
Q ss_pred ceeEEEEcCCCCEEEEEeC-------------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC
Q 011368 315 SISDIKFANDGQHLLSRDY-------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 381 (487)
Q Consensus 315 ~v~~v~~s~~~~~l~s~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 381 (487)
..-.|+|+|.|.++++-+. +.+.+.+..+ ++..+.+.++... .++.++|+||
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~ga--------------E~TG~~fspD 541 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCc--------------cCcCeeECCC
Confidence 4578999999986665321 1344555543 5554445544331 1269999999
Q ss_pred CCEEEEE
Q 011368 382 GLHFATG 388 (487)
Q Consensus 382 ~~~l~sg 388 (487)
++.|.+.
T Consensus 542 g~tlfvn 548 (592)
T 3zwu_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9887754
No 359
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=42.39 E-value=1.8e+02 Score=25.61 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=13.2
Q ss_pred CCcEEEEEeC-CCcEEEEEccc
Q 011368 126 NGSMFILSTN-DKTIKLWKVRD 146 (487)
Q Consensus 126 ~~~~l~s~~~-d~~i~iwd~~~ 146 (487)
++.+++.|+. ...+.++|...
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 4566666653 34677778763
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.30 E-value=54 Score=35.06 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=27.9
Q ss_pred cEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368 255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 289 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 289 (487)
.+.+++..++. .++++-+.|+++|+|++.+++++
T Consensus 239 ~~vs~~~~~~~-~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTT-TEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCc-cEEEEEeCCCEEEEEECCCCCeE
Confidence 34555666776 89999999999999999998765
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.80 E-value=1.5e+02 Score=29.60 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=30.0
Q ss_pred cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeec
Q 011368 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (487)
Q Consensus 114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 155 (487)
..|.++.+ +..++++-+.|.++|+|++.++++......
T Consensus 222 ~~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35666655 367999999999999999999987766543
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.46 E-value=39 Score=33.54 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=27.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcC
Q 011368 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66 (487)
Q Consensus 31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 66 (487)
....|.|+.+. ..+|++-+.|+++|+|++.++++
T Consensus 220 ~~~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 220 YDSVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp CCCEEEEEEET--TTEEEEEETTCEEEEEETTTTEE
T ss_pred cCceEEEeccC--CcEEEEEEcCCeEEEEEcCCCce
Confidence 34567777664 67999999999999999998864
No 363
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=33.19 E-value=4e+02 Score=26.95 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=34.5
Q ss_pred eeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368 207 INSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 207 v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 275 (487)
+..+++.|. .+.++.+ ..+. ||.....++..+.+...+ .+......+..+.++|..+..++++..+
T Consensus 123 ~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~-~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 123 GERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIP-DAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSC-CCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred eeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCc-cccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 456777764 3455555 4443 444444556555442211 0001124578899998653566666554
No 364
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=31.91 E-value=2.8e+02 Score=24.83 Aligned_cols=70 Identities=10% Similarity=0.024 Sum_probs=36.5
Q ss_pred CceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCC--CCCC----CCCcEEEEEEecCCCCEEEEEeCCC
Q 011368 205 FNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS--NMDD----LTEVITSAEFHPIYCNLLAYSSSRG 276 (487)
Q Consensus 205 ~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~----~~~~v~~v~~~p~~~~~l~~~~~dg 276 (487)
..+.+|.+.|. ...|..+ .++.|. .....+...+.+..... .+.. ....+.++.++|..+..|..+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~--~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVF--ESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEE--EESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEE--EECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 45788999873 4445555 555443 33334454443311100 0000 0134889999997435666666544
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.58 E-value=1.5e+02 Score=28.82 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=37.4
Q ss_pred cEEEEEEecCCCCEEEEEeCC------------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368 255 VITSAEFHPIYCNLLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 322 (487)
Q Consensus 255 ~v~~v~~~p~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s 322 (487)
..-.|+|+|.| .+++.-..+ ..+.+.+..++++. +.+... ....++.++|+
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~----rf~~~P------------~gaE~TG~~fs 539 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR----RFMVGP------------IGCEVTGISFS 539 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE----EEEECC------------TTCEEEEEEEC
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEE----EEEeCC------------CCccCcCeeEC
Confidence 45779999999 755554322 23444555555432 333331 13689999999
Q ss_pred CCCCEEEEE
Q 011368 323 NDGQHLLSR 331 (487)
Q Consensus 323 ~~~~~l~s~ 331 (487)
||++.|+..
T Consensus 540 pDg~tlfvn 548 (592)
T 3zwu_A 540 PDQKTLFVG 548 (592)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999988764
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.34 E-value=3e+02 Score=29.34 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=29.2
Q ss_pred ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC
Q 011368 206 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 245 (487)
Q Consensus 206 ~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 245 (487)
.+.+++..++..++++- .|+++++|++. .+.++...++.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~-t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLS-TNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETT-TTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECC-CCCeEEeechh
Confidence 44556666777888775 99999999999 46677666654
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=28.88 E-value=2.3e+02 Score=27.43 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=37.9
Q ss_pred CcEEEEEEecCCCCEEEEEeC------------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368 254 EVITSAEFHPIYCNLLAYSSS------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 321 (487)
Q Consensus 254 ~~v~~v~~~p~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~ 321 (487)
.....|.|+++| .+.++... ...+..++..++++. +.+.. .....++.++|
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~----~fl~~------------P~~aEpnGiaf 538 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR----RFMVG------------PIGCEVTGISF 538 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEE----EEEEC------------CTTCEEEEEEE
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEE----EEEeC------------CCCccccCCEE
Confidence 456789999998 66663321 124555565555432 22222 00246899999
Q ss_pred cCCCCEEEEE
Q 011368 322 ANDGQHLLSR 331 (487)
Q Consensus 322 s~~~~~l~s~ 331 (487)
+||++.|+..
T Consensus 539 SPD~ktLfV~ 548 (592)
T 4a9v_A 539 SPDQKTLFVG 548 (592)
T ss_dssp CTTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999988875
No 368
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=24.33 E-value=5.4e+02 Score=25.62 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=20.8
Q ss_pred eeEEE-eCCCCCEEEEe-c-----CCeEEEEEccCC
Q 011368 207 INSIS-NNSDCETFVSA-D-----DLRINLWNLEIS 235 (487)
Q Consensus 207 v~~i~-~s~~~~~l~s~-~-----d~~i~iwd~~~~ 235 (487)
...+. ++|++++++.+ + -..++++|+.++
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~ 166 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKK 166 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTT
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcC
Confidence 34555 89999988875 2 236899999854
No 369
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=20.19 E-value=6.7e+02 Score=25.23 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=36.7
Q ss_pred CceeEEEeCCC-CCEEEEe-cCCe----EEEEEccCCCceeEEeecCCCCCCC---CCCcEEEEEEecCCCCEEEEEeCC
Q 011368 205 FNINSISNNSD-CETFVSA-DDLR----INLWNLEISDQCFNIVDMKPSNMDD---LTEVITSAEFHPIYCNLLAYSSSR 275 (487)
Q Consensus 205 ~~v~~i~~s~~-~~~l~s~-~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~~~p~~~~~l~~~~~d 275 (487)
..|.+|++.|. .+.++.+ .+.. -.||.....++..+.+... ....+ ....+..++++|..+..++.+...
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~-~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~ 142 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESP-FPMGANDMGRNNGERLAVNPFNSNEVWMGTRT 142 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECS-SCCCTTSTTTTSCCCEEEETTEEEEEEEECSS
T ss_pred CceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCC-cccCccCCCccceeEEEEcCCCCCEEEEEecc
Confidence 46889999874 3444444 3321 4455555566666655322 11111 011345688887653566666544
Q ss_pred C
Q 011368 276 G 276 (487)
Q Consensus 276 g 276 (487)
+
T Consensus 143 ~ 143 (789)
T 1sqj_A 143 E 143 (789)
T ss_dssp S
T ss_pred C
Confidence 3
Done!