Query 011369
Match_columns 487
No_of_seqs 408 out of 2053
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 06:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1.9E-38 6.6E-43 309.4 6.4 372 63-486 26-409 (451)
2 3o7q_A L-fucose-proton symport 100.0 8E-38 2.7E-42 303.9 10.0 351 64-486 25-407 (438)
3 2gfp_A EMRD, multidrug resista 100.0 4.4E-36 1.5E-40 285.3 6.3 344 69-485 4-351 (375)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.9E-33 1.3E-37 274.9 10.5 371 110-486 47-448 (491)
5 4gc0_A D-xylose-proton symport 100.0 1.2E-33 4E-38 278.7 6.5 377 66-483 13-429 (491)
6 2cfq_A Lactose permease; trans 99.9 8.9E-30 3E-34 245.0 -5.8 332 108-486 34-375 (417)
7 2xut_A Proton/peptide symporte 99.9 1.6E-27 5.3E-32 236.8 6.1 153 106-258 37-200 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 9.9E-15 3.4E-19 141.7 10.2 150 108-257 279-434 (451)
9 2cfq_A Lactose permease; trans 99.4 2.3E-13 8E-18 130.4 9.3 145 115-259 257-402 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.4 4E-12 1.4E-16 124.7 14.7 151 108-259 310-474 (491)
11 3o7q_A L-fucose-proton symport 99.3 1.1E-12 3.7E-17 126.7 7.9 140 108-250 286-426 (438)
12 4gc0_A D-xylose-proton symport 99.2 2.4E-10 8.3E-15 112.0 13.4 155 106-260 301-466 (491)
13 2gfp_A EMRD, multidrug resista 99.0 9E-11 3.1E-15 110.7 1.2 135 106-243 223-363 (375)
14 2xut_A Proton/peptide symporte 98.8 4.9E-09 1.7E-13 103.5 7.0 142 118-259 336-505 (524)
15 2g9p_A Antimicrobial peptide l 49.9 6 0.00021 18.8 0.8 13 136-148 2-14 (26)
16 2dw3_A Intrinsic membrane prot 25.3 1.5E+02 0.0051 19.5 5.1 29 234-262 31-59 (77)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.9e-38 Score=309.45 Aligned_cols=372 Identities=12% Similarity=0.065 Sum_probs=289.0
Q ss_pred cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (487)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d 142 (487)
+++.+..+++..+..+++...++.. +|.+.+++ .+..+.+++.+++.++..++++++|+++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d 87 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD 87 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456777777778888777766643 48899999 99999999999999999999999999999
Q ss_pred hcCCCeEehhHHHHHHHHHHHhhc----chhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhh
Q 011369 143 SHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 218 (487)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 218 (487)
|+|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 167 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchh
Q 011369 219 VALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD 297 (487)
Q Consensus 219 ~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
.+++|++++.+.+..| ||+.|++.+++.++..++.++..||++++...++.++... . . ++ +.+
T Consensus 168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~-~~---~~~- 231 (451)
T 1pw4_A 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN--D---------Y-PD---DYN- 231 (451)
T ss_dssp HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC--C--------------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc--c---------c-cc---cch-
Confidence 9999999999888888 9999999999888877777777777544322111110000 0 0 00 000
Q ss_pred hhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeec
Q 011369 298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV 376 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~ 376 (487)
. ..++. ...++ ...++++++|.++...+..++.......+..+.|.|+++.++.+.... .+..+..+
T Consensus 232 -~--~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 232 -E--KAEQE-------LTAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp -----------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred -h--hhhcc-------ccccc--chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 00000 00000 114567889999999998888888888889999999998888886655 55566778
Q ss_pred ccchhhhhhhhhHhhh--cccchhhhHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeeEEEEee
Q 011369 377 CGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA-ISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHS 451 (487)
Q Consensus 377 ~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (487)
+.+++.++.+++.||+ ++| +.+..+..+.. +..++.... .+.+......++.+++.+...+....+..+.
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 374 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 374 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 8999999999999999 777 55555554444 333333322 2455566666677777777777667888899
Q ss_pred cCCCchhHHHHHHHHHHHhh-cCCCccceeeeeecc
Q 011369 452 VKPSLRALSMAISTVSIHIF-GDVPSSPLVGVLQVC 486 (487)
Q Consensus 452 ~~~~~r~~~~g~~~~~~~~~-g~~~~p~~~g~l~~~ 486 (487)
.|++.|+++.|+. .....+ |..++|.+.|++.|+
T Consensus 375 ~~~~~~g~~~~~~-~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 375 APKKAAGTAAGFT-GLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp SCTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred hchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999997 556666 888999999988775
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=8e-38 Score=303.87 Aligned_cols=351 Identities=18% Similarity=0.219 Sum_probs=280.1
Q ss_pred chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (487)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr 143 (487)
++.+..+++..+..+++....+.. +|.+.+++|++..+.+++.+++.++..++++++|+++||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr 87 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDIL-----------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345666666777777776665542 488999999999999999999999999999999999999
Q ss_pred cCCCeEehhHHHHHHHHHHHh---hcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhh
Q 011369 144 HNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA 220 (487)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 220 (487)
+|||++++++.++.+++.+++ ++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..
T Consensus 88 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhc-cccc-------------------------hHHHHHHHHHHHHHHHHHHhhcc-ccccCCCCCCCcccch
Q 011369 221 LGYVYGGVVG-SHLN-------------------------WRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQ 273 (487)
Q Consensus 221 ~g~~~~~~l~-~~~~-------------------------wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 273 (487)
+++++++.+. +..+ ||+.|++.+++.++..++.++.. ||..++.+++++
T Consensus 168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---- 243 (438)
T 3o7q_A 168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK---- 243 (438)
T ss_dssp HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS----
T ss_pred HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc----
Confidence 9999999988 5554 99999988887766665554432 332111000000
Q ss_pred hhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecc
Q 011369 274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG 353 (487)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (487)
..+..+.+++++++|.++...+..++.......+..+.
T Consensus 244 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (438)
T 3o7q_A 244 ------------------------------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281 (438)
T ss_dssp ------------------------------------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112356678899999998888888888888888999
Q ss_pred cce-eeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369 354 PKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFT 431 (487)
Q Consensus 354 p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (487)
|.| +++.++.+.... ....+..++.+++.++.+++.||+++| +.+..+.++..+..++....++.+. +...+
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 355 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIALT 355 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHHH
Confidence 999 888778886655 555666788899999999999999998 6777766666666655555444443 34446
Q ss_pred HHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369 432 VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC 486 (487)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~ 486 (487)
+.+++.+..++....+..+.+|++ ++.+.++. . .+.+|.+++|.+.|++.|+
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI-V-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHH-H-HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHH-H-HHHHHHHHHHHHHHHHHHH
Confidence 677777777777777778888766 88888885 4 5567888999999988774
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=4.4e-36 Score=285.34 Aligned_cols=344 Identities=13% Similarity=0.086 Sum_probs=270.0
Q ss_pred HHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCe
Q 011369 69 IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR 148 (487)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 148 (487)
.+++..+...++...+.. .+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 66 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIP-----------------AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP 66 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHhh-----------------hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 345555555555555553 248899999999999999999999999999999999999999999
Q ss_pred EehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHh
Q 011369 149 LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228 (487)
Q Consensus 149 ~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 228 (487)
+++.+.++.+++.++.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 67 VILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhcccc
Q 011369 229 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308 (487)
Q Consensus 229 l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (487)
+.++.+||+.|++.+++.++..+...+..||++++.++++ +
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------------------------- 187 (375)
T 2gfp_A 147 LDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT--R------------------------------------- 187 (375)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC--C-------------------------------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc--c-------------------------------------
Confidence 9998999999999998887777656666666432211000 0
Q ss_pred ccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhh
Q 011369 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGF 387 (487)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 387 (487)
..+++++++++|.++...+..++.......+..+.|.|+++..+.++... .+.....++.+++.++.++
T Consensus 188 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 188 ----------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp ----------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00123455677888888888888888888888999999998778776555 4455666777888888888
Q ss_pred hHhhhcccchhhhHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHH
Q 011369 388 ILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS 464 (487)
Q Consensus 388 l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~ 464 (487)
+.||.+++ ....... .......+.... .++.+..++..++.+++.+...+....+..+..| ++|+++.|+.
T Consensus 258 l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~ 331 (375)
T 2gfp_A 258 PNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALV 331 (375)
T ss_dssp TTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHH
Confidence 88887763 2222221 111111111111 2355556667777888888888888888888887 8999999997
Q ss_pred HHHHHhhcCCCccceeeeeec
Q 011369 465 TVSIHIFGDVPSSPLVGVLQV 485 (487)
Q Consensus 465 ~~~~~~~g~~~~p~~~g~l~~ 485 (487)
.....+|..++|.+.|.+.|
T Consensus 332 -~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 332 -GGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp -HHHHHHHHHCCSTTCTHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhc
Confidence 56677788899999988765
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=3.9e-33 Score=274.87 Aligned_cols=371 Identities=11% Similarity=0.001 Sum_probs=249.2
Q ss_pred cccccCccccchhhhHHHHHHHHHHHHHHHhhhh-cCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhh
Q 011369 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI 188 (487)
Q Consensus 110 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~ 188 (487)
+|+|.+..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3499999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCc--hhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 011369 189 SLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP 266 (487)
Q Consensus 189 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~ 266 (487)
+...+++.|++|+++ |+.++++++.+.++|..++|++++.+.++.|||+.|++.++..++..++.++..|+..++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 778889899999999999999999999999999999999887766666555554443322111
Q ss_pred CCccc-chhhccc-ccC----------------cccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhc
Q 011369 267 AESGK-AQVVASV-SEG----------------SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ 328 (487)
Q Consensus 267 ~~~~~-~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (487)
+++.+ ...+..+ .+. ..+....++..... ..... ... ........++.....+...+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL-TIVAI-AIP---VFYFAWMISSVKVTSTEHLR 281 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH-HHHHH-HHH---HHHHHHHC------------
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh-hHHHH-HHH---HHHHHHHhhcccccHHHHHH
Confidence 11110 0000000 000 00000000000000 00000 000 00000000000000111112
Q ss_pred chhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHH
Q 011369 329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407 (487)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 407 (487)
....+...+..+...........++|.|.++..+.+.... .......++.+++.++.+++.||++||+......+..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL 361 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 2233444444455555555566677888877666663333 445566677888899999999999998543323344555
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccc
Q 011369 408 FLGAISCLTAFCLS---------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 478 (487)
Q Consensus 408 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~ 478 (487)
.+..+..++..... +.+..+...++.+++.+...+....+..+..|++.|+++.|+. .....+|..++|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~i~~~ 440 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW-FLSSSVGSALNAQ 440 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 55555544443322 4455666777788888887888888999999999999999997 6677778889999
Q ss_pred eeeeeecc
Q 011369 479 LVGVLQVC 486 (487)
Q Consensus 479 ~~g~l~~~ 486 (487)
+.|++.|.
T Consensus 441 ~~~~~~~~ 448 (491)
T 4aps_A 441 LVTLYNAK 448 (491)
T ss_dssp HGGGGGGS
T ss_pred HHHHHhcc
Confidence 98887653
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.98 E-value=1.2e-33 Score=278.68 Aligned_cols=377 Identities=14% Similarity=0.107 Sum_probs=243.4
Q ss_pred hhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCcccccccc--------CccccchhhhHHHHHHHHHHHHH
Q 011369 66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL--------NNFQDGVLSSAFMVGLLVASPIF 137 (487)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~ 137 (487)
+..+.+++.+..++|.+.++.. +|.+.++++. +..+.|++.+++.+|..++++++
T Consensus 13 i~~~a~lg~~~~Gyd~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 13 ITLVATLGGLLFGYDTAVISGT-----------------VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGT-----------------HHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778888999988753 3667766643 34567899999999999999999
Q ss_pred HHhhhhcCCCeEehhHHHHHHHHHHHhh------------------cchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcC
Q 011369 138 ASLAKSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA 199 (487)
Q Consensus 138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~ 199 (487)
|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|+|.|...+....+++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc--------ccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccc
Q 011369 200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK 271 (487)
Q Consensus 200 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 271 (487)
|+++|++..++.+.+..+|.++++.++..+.. ..+||+.+.+..++.++..+. .+..||++++...+++.+
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQE 234 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchh
Confidence 99999999999999999999999988876653 246888888887776655444 445577765432222221
Q ss_pred chhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhH-HHHHHHHHHHHhhheeee
Q 011369 272 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY-VVNVLGYIAYNFVIGAYS 350 (487)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 350 (487)
+..+..++.. ..+ +..+ +..+.... ....++. .......+.+.. .......+.+..+.+.+.
T Consensus 235 ~a~~~l~~~~--~~~---~~~~----~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (491)
T 4gc0_A 235 QAEGILRKIM--GNT---LATQ----AVQEIKHS-------LDHGRKT-GGRLLMFGVGVIVIGVMLSIFQQFVGINVVL 297 (491)
T ss_dssp HHHHHHHHHH--HHH---HHHH----HHHHHHHH-------HHHHHHH-TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhHHHhc--CCc---hhHH----HHHHHHHH-------HHhhhhh-hhHHHHhcccHHHHHHHHHHHHHHhhhhHHH
Confidence 1111000000 000 0000 00000000 0000000 011112233333 333334444455555566
Q ss_pred ecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 011369 351 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS----SLYGF 426 (487)
Q Consensus 351 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 426 (487)
.|.|.+.++....+........+..+..+++.++++++.||+||| +.+..+.....+..+...... ..+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 372 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVA 372 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHHHhcccchHHH
Confidence 666666655433222222344556678888999999999999999 566555555555444333221 12223
Q ss_pred HHHHHHHHHHHhccCCC-eeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeee
Q 011369 427 LALFTVGELLVFATQAP-VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL 483 (487)
Q Consensus 427 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l 483 (487)
+...++...+++..+.+ .+.+..|.+|++.|+++.|+. ...+.+++++++.+.+.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~-~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA-VAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHH-HHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33333444444444443 356677888889999999997 555555666666554433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=8.9e-30 Score=244.96 Aligned_cols=332 Identities=12% Similarity=0.031 Sum_probs=211.5
Q ss_pred cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHH---HHhhcchhHH-HHHHHHHHhhhh
Q 011369 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGVG 183 (487)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~a~~~~-~l~~~r~l~G~g 183 (487)
+++++|.++.+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ..+++++... .++..+++.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667799999999999999999999999999999999999999998888765432 2223333221 245667777777
Q ss_pred hhhhhhhhhhhhhhcCCC--CchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369 184 EASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (487)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (487)
.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|++.+++.++..+..++..||++
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCS
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 666665555555555443 356777788888899999999999999886 58999999887765444443333333321
Q ss_pred CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 011369 262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341 (487)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (487)
+. . +++++. +. + . + +...++.++++++|.++...+..+.
T Consensus 193 ~~-~-~~~~~~-------------~~--~-~-----------~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T 2cfq_A 193 SS-A-TVANAV-------------GA--N-H-----------S------------AFSLKLALELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp CS-S-CSSSSS-------------SS--C-C-----------C------------CCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cc-c-cccccc-------------cc--c-c-----------c------------cccHHHHHHHhcCCchhhHHHHHHH
Confidence 10 0 000000 00 0 0 0 0001234556778887776655444
Q ss_pred HHhhheeeeecccceeeeccccc---ccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 011369 342 YNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA 417 (487)
Q Consensus 342 ~~~~~~~~~~~~p~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (487)
....+..+..++|.|+.+.++.. .... ....+..++.+++.++.++++||+++| +.+..+..+.++..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHH
Confidence 44444444455676665543321 1111 223344566778899999999999988 66665555555444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369 418 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC 486 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~ 486 (487)
...++.+..++..++.+++.....+....+..+..|++.|+++.+......+.+|++++|.+.|++.|+
T Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp TTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 333344444444444444444444444567788888899999999843455667888999999988764
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.94 E-value=1.6e-27 Score=236.81 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=138.7
Q ss_pred Cccccccc------cCccccchhhhHHHHHHHHHHHHHHHhhhhc-CCCeEehhHHHHHHHHHHHhhcch-hHHHHHHHH
Q 011369 106 SGIQGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICR 177 (487)
Q Consensus 106 ~~i~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r 177 (487)
+.+.+++| .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34677888 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHH---HHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHh
Q 011369 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (487)
Q Consensus 178 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (487)
+++|++.+...+...+++.|++|+++|+++.+. ++.+.++|..++|.+++.+.+..+||+.|++.+++.++..+..+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 89999999999999999999889999999999888766555544
Q ss_pred hccc
Q 011369 255 VIKP 258 (487)
Q Consensus 255 ~~~p 258 (487)
+..|
T Consensus 197 ~~~~ 200 (524)
T 2xut_A 197 LGRK 200 (524)
T ss_dssp SSSS
T ss_pred Hhcc
Confidence 4333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=9.9e-15 Score=141.65 Aligned_cols=150 Identities=11% Similarity=-0.036 Sum_probs=133.0
Q ss_pred cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc--CCCeEehhHHHHHH-HHHHHhhcc--hhHHHHHHHHHHhhh
Q 011369 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGCGSS--FDFWSIAICRMLVGV 182 (487)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~a--~~~~~l~~~r~l~G~ 182 (487)
+++.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|+
T Consensus 279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358 (451)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4444899999999999999999999999999999999 99999888877776 677777766 378888889999999
Q ss_pred hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh-hhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (487)
Q Consensus 183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (487)
+.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|++.+++.++..++.++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999999999999999999988877766665543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.43 E-value=2.3e-13 Score=130.39 Aligned_cols=145 Identities=8% Similarity=0.010 Sum_probs=126.1
Q ss_pred CccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011369 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF 194 (487)
Q Consensus 115 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~ 194 (487)
+..+.++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888899999999999999999999999998888888888888888888888888898887777778899
Q ss_pred hhhcCCCCchhHHHHH-HHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369 195 IDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (487)
Q Consensus 195 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (487)
+.|.+|++.|+.+.++ ++....+|..++|.+++.+.+..|++..|.+.+++.++..++.++..||
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999998 4888889999999999999988899999999988887777666665554
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.38 E-value=4e-12 Score=124.67 Aligned_cols=151 Identities=14% Similarity=0.059 Sum_probs=125.5
Q ss_pred cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEeh-----hHHHHHHHHHHHhhcch---------hHHHH
Q 011369 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-----VGLSVWTFATAGCGSSF---------DFWSI 173 (487)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~a~---------~~~~l 173 (487)
..+.++.+..+.+++.+...++..++.++.|++.||+|||+... ++.++.+++.++.++.. +.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 34446766678899999999999999999999999999998877 78888888877776643 77888
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 011369 174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA 253 (487)
Q Consensus 174 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~ 253 (487)
.+.-++.|++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+. ++.+.|++.+++.++..++.
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999888764 67788888888887777777
Q ss_pred hhcccc
Q 011369 254 FVIKPL 259 (487)
Q Consensus 254 ~~~~p~ 259 (487)
++..++
T Consensus 469 ~~~~~~ 474 (491)
T 4aps_A 469 VFLSKR 474 (491)
T ss_dssp HHC---
T ss_pred HHHHHH
Confidence 666554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.34 E-value=1.1e-12 Score=126.72 Aligned_cols=140 Identities=9% Similarity=-0.128 Sum_probs=121.8
Q ss_pred cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhh
Q 011369 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 187 (487)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~ 187 (487)
+++.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++..++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 445569999999999999999999999999999999999999999999999999999988887765554 8889999999
Q ss_pred hhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHH
Q 011369 188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFA 250 (487)
Q Consensus 188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~ 250 (487)
.+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++..
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999999999999965 888888877 566999999999999999988 9999998766544433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.15 E-value=2.4e-10 Score=111.95 Aligned_cols=155 Identities=8% Similarity=-0.023 Sum_probs=116.2
Q ss_pred CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-----hhHHHHHHHHHHh
Q 011369 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLV 180 (487)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~ 180 (487)
|.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...-+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 55666677777677777778888899999999999999999999999888887776665432 2222222222222
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc------ccchHHHHHHHHHHHHHHHHHHh
Q 011369 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAF 254 (487)
Q Consensus 181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~ 254 (487)
+.......+....+.+|.+|.+.|++++|+......+|..+++.+...+.+ ..++.+.|++.++++++..++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222223456778899999999999999999999999999888877665543 34566789999999999888888
Q ss_pred hccccc
Q 011369 255 VIKPLQ 260 (487)
Q Consensus 255 ~~~p~~ 260 (487)
++.||+
T Consensus 461 ~~~PET 466 (491)
T 4gc0_A 461 KFVPET 466 (491)
T ss_dssp HHCCCC
T ss_pred heecCC
Confidence 888985
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.97 E-value=9e-11 Score=110.70 Aligned_cols=135 Identities=8% Similarity=-0.019 Sum_probs=109.1
Q ss_pred Ccccc-ccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHH-HHHHHHHhhc----chhHHHHHHHHHH
Q 011369 106 SGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGS----SFDFWSIAICRML 179 (487)
Q Consensus 106 ~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~----a~~~~~l~~~r~l 179 (487)
|.+.+ ++|.++.+.+++.+...++..++.++.+++.||+|+| +..+..+ ...+..+... .++.+.+++..++
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL 300 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 44444 4899999999999999999999999999999999872 2333333 2222221122 2377778889999
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHH
Q 011369 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 243 (487)
Q Consensus 180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~ 243 (487)
.|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+|+..+.+.+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999998 899999999999999999999999999988878888877754
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.80 E-value=4.9e-09 Score=103.53 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=102.6
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhh----hhcCCC----eEehhHHHHHHHHHHHhhcc---------hhHHHHHHHHHHh
Q 011369 118 QDGVLSSAFMVGLLVASPIFASLA----KSHNPF----RLIGVGLSVWTFATAGCGSS---------FDFWSIAICRMLV 180 (487)
Q Consensus 118 ~~~~~~s~~~~~~~i~~~~~g~l~----dr~Grr----~~l~~~~~~~~~~~~~~~~a---------~~~~~l~~~r~l~ 180 (487)
..+++.+...++..++.++.+++. ||.|+| +.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 345555555566666776666654 555433 35667888888888777764 3778888899999
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc--ch---------HHHHHHHHHHHHHH
Q 011369 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NW---------RYAFWGEAILMLPF 249 (487)
Q Consensus 181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--~w---------r~~f~~~~~~~~~~ 249 (487)
|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988742 24 34477777776666
Q ss_pred HHHHhhcccc
Q 011369 250 AVLAFVIKPL 259 (487)
Q Consensus 250 ~~~~~~~~p~ 259 (487)
.++.+++.++
T Consensus 496 ~~~~~~~~~~ 505 (524)
T 2xut_A 496 AIVFALYARS 505 (524)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHHH
Confidence 6665555444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=49.86 E-value=6 Score=18.84 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=10.3
Q ss_pred HHHHhhhhcCCCe
Q 011369 136 IFASLAKSHNPFR 148 (487)
Q Consensus 136 ~~g~l~dr~Grr~ 148 (487)
+.|.+..+||||.
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 3678889999985
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=25.34 E-value=1.5e+02 Score=19.52 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccccccC
Q 011369 234 NWRYAFWGEAILMLPFAVLAFVIKPLQLK 262 (487)
Q Consensus 234 ~wr~~f~~~~~~~~~~~~~~~~~~p~~~~ 262 (487)
||-.++.+...+.++..-.+=.++||..+
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 46556655555544444444555677443
Done!