Query 011369
Match_columns 487
No_of_seqs 408 out of 2053
Neff 11.1
Searched_HMMs 13730
Date Mon Mar 25 06:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011369.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011369hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 6.8E-39 5E-43 309.8 6.4 376 63-486 23-406 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 1E-26 7.6E-31 220.8 0.8 331 108-486 34-375 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.6 1.2E-15 8.7E-20 143.5 6.1 154 106-259 248-402 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 1.1E-13 7.8E-18 131.7 10.3 152 106-257 274-431 (447)
5 d2iuba2 f.17.3.1 (A:286-349) M 11.2 1.1E+02 0.0079 17.7 3.1 23 234-256 37-59 (64)
6 d3proc1 d.52.1.1 (C:6-85) Alph 10.9 81 0.0059 19.6 2.4 40 106-145 5-44 (80)
7 d1q90n_ f.23.27.1 (N:) PetN su 9.0 1.1E+02 0.0083 14.3 2.4 22 118-139 7-28 (31)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 7.8 5.4E+02 0.039 21.1 10.7 51 177-227 282-332 (383)
9 d2e74d2 f.23.12.1 (D:12-45) IS 4.5 2.4E+02 0.017 13.5 2.8 20 204-223 4-23 (34)
10 d2e74h1 f.23.27.1 (H:3-29) Pet 4.0 2.3E+02 0.017 12.6 2.3 19 120-138 5-23 (27)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=6.8e-39 Score=309.81 Aligned_cols=376 Identities=13% Similarity=0.045 Sum_probs=281.5
Q ss_pred cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (487)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d 142 (487)
+|+++..++++++..++++..++.. .|.++ |+|+|.+|+|++.+++.+++.++++++|+++|
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D 84 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSD 84 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888898888754 26565 68999999999999999999999999999999
Q ss_pred hcCCCeEehhHHHHHHHHHHHhhcch----hHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhh
Q 011369 143 SHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 218 (487)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~~~a~----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 218 (487)
|+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.|...+....++.|++|+++|++++++++.+..+|
T Consensus 85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 164 (447)
T d1pw4a_ 85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164 (447)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchh
Confidence 99999999999999999999988774 78899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchh
Q 011369 219 VALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD 297 (487)
Q Consensus 219 ~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
..+++.+++.+... .+||+.|++.+++.++..++.++..++.++....++..+...+. .+..
T Consensus 165 ~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-- 227 (447)
T d1pw4a_ 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY---------------PDDY-- 227 (447)
T ss_dssp HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------------
T ss_pred hhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhc---------------ccch--
Confidence 99999998876654 47999999999998888888777776644332221111110000 0000
Q ss_pred hhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeec
Q 011369 298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV 376 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~ 376 (487)
.+..+ ++........+..++++.++......++.....+....+.|.|+++..+.+.... ....+..+
T Consensus 228 --~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
T d1pw4a_ 228 --NEKAE---------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296 (447)
T ss_dssp -------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred --hhccc---------cccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchh
Confidence 00000 0001111335567888999998888888888888888999999999888886665 55566778
Q ss_pred ccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCC
Q 011369 377 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP 454 (487)
Q Consensus 377 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (487)
..+++.++.|++.||++++.... .......+.....+... ...+.+..++..++.+++.+...+....+..+..|+
T Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 374 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRGNRGA--TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHH--HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred hhhhhhhhhhhhhhhcccccccc--ccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 88999999999999999875421 11111111111111111 123455556666667777666666677778889999
Q ss_pred CchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369 455 SLRALSMAISTVSIHIFGDVPSSPLVGVLQVC 486 (487)
Q Consensus 455 ~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~ 486 (487)
+.|+++.|+.+...+..|.+++|.+.|++.|+
T Consensus 375 ~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~ 406 (447)
T d1pw4a_ 375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 406 (447)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975555666777789998988775
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=1e-26 Score=220.82 Aligned_cols=331 Identities=13% Similarity=0.016 Sum_probs=221.8
Q ss_pred cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHH----HHHHHHhhhh
Q 011369 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI----AICRMLVGVG 183 (487)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l----~~~r~l~G~g 183 (487)
+++++|+|+.++|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..+.... ++.+.+.+.+
T Consensus 34 l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T d1pv7a_ 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc
Confidence 677899999999999999999999999999999999999999999999999988888887765554 4556666666
Q ss_pred hhhhhhhhhhhhhhcCCC--CchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369 184 EASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (487)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (487)
.+...........+..++ +++.+..+........+..+++.+++.+.+. +|+..+........+..++.++..++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T d1pv7a_ 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred ccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccc
Confidence 665555555444444332 2445567777888888999999999988864 5666666666666666666666665543
Q ss_pred CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 011369 262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341 (487)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (487)
....++++.+....+ ......++..+++..+........
T Consensus 193 ~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T d1pv7a_ 193 SSATVANAVGANHSA-----------------------------------------FSLKLALELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp SSSCSSHHHHSCCCC-----------------------------------------CCHHHHHHHTTSSHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccc-----------------------------------------ccccccccccccccccchhhhhHH
Confidence 322211111100000 000111112222222222222111
Q ss_pred HH---hhhe-eeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHH
Q 011369 342 YN---FVIG-AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT 416 (487)
Q Consensus 342 ~~---~~~~-~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (487)
.. .... ....+.+.+..+ .+.+.... .......++..++..+.+++.||.+++ +.+..+..+..+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 232 VSCTYDVFDQQFANFFTSFFAT-GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccccc-cccchhhhcccccccccccccchhhhhhhhcccccc-----cchhhhHHHHHHhhhc
Confidence 11 1111 111222222222 22232222 333455677788999999999999998 7777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369 417 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC 486 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~ 486 (487)
....++.+..++..++.+++.+...+....+..+.+|++.|+++.|+.....+.+|.+++|.+.|++.|+
T Consensus 306 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~ 375 (417)
T d1pv7a_ 306 SSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777878888888888888888888889999999999999999864556667888999999998875
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.55 E-value=1.2e-15 Score=143.50 Aligned_cols=154 Identities=7% Similarity=-0.018 Sum_probs=139.2
Q ss_pred CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (487)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g 185 (487)
+...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (417)
T d1pv7a_ 248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327 (417)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHH
Confidence 33445556677788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhcCCCCchhHHHHHH-HhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369 186 SFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (487)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (487)
...+....++.|.+|+++|+++.++. +....+|..++|.++|.+.++.||+..|++.+++.++..++..+..++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999985 566779999999999999999999999999999988888777777644
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.44 E-value=1.1e-13 Score=131.72 Aligned_cols=152 Identities=11% Similarity=-0.040 Sum_probs=122.6
Q ss_pred CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHH---HHHHHh--hcchhHHHHHHHHHHh
Q 011369 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGC--GSSFDFWSIAICRMLV 180 (487)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~--~~a~~~~~l~~~r~l~ 180 (487)
..+.+.++.+..+.++..+...++..++.++.|++.||++||+.......... ++.+.. ....+.+..+++-++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
T d1pw4a_ 274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353 (447)
T ss_dssp HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34667789999999999999999999999999999999998875443333322 222222 2345778888888999
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh-hhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (487)
Q Consensus 181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (487)
|++.+...+....++.|.+|+++|+++.|+.+....+ |.+++|.+.+.+.++.||+..|++.++..++..++..++.
T Consensus 354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888999999999999999999999999887766 5677899999999999999999998887777666665554
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.18 E-value=1.1e+02 Score=17.72 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=8.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhc
Q 011369 234 NWRYAFWGEAILMLPFAVLAFVI 256 (487)
Q Consensus 234 ~wr~~f~~~~~~~~~~~~~~~~~ 256 (487)
+|.+.|+....+.+...+..+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ 59 (64)
T d2iuba2 37 RWKWGYPVVLAVMGVIAVIMVVY 59 (64)
T ss_dssp -----CHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHHHH
Confidence 46655555544444444444443
No 6
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=10.85 E-value=81 Score=19.57 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=27.0
Q ss_pred CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 011369 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145 (487)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G 145 (487)
..|++|+|+++.|..-=...-.-..-+-.-.-.-+.|+||
T Consensus 5 ~AmqRDLgLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~fa 44 (80)
T d3proc1 5 FAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFA 44 (80)
T ss_dssp HHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4588999999988766655555555555555556666654
No 7
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.03 E-value=1.1e+02 Score=14.26 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=13.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHH
Q 011369 118 QDGVLSSAFMVGLLVASPIFAS 139 (487)
Q Consensus 118 ~~~~~~s~~~~~~~i~~~~~g~ 139 (487)
+++|......+.+.+...+||+
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 4456555566666666666664
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.83 E-value=5.4e+02 Score=21.14 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHH
Q 011369 177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227 (487)
Q Consensus 177 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 227 (487)
-++.|+..|........++.+...-++---+.++...+.-.|.+..++++.
T Consensus 282 A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~ 332 (383)
T d1u7ga_ 282 ALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAA 332 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhcC
Confidence 344566666566666666665566566667788888887777777776643
No 9
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.52 E-value=2.4e+02 Score=13.49 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=10.8
Q ss_pred hhHHHHHHHhhhhhhhhhHH
Q 011369 204 KTAWLSMFYMCIPTGVALGY 223 (487)
Q Consensus 204 r~~~~~~~~~~~~~G~~~g~ 223 (487)
|-..+.+...+...|..+|.
T Consensus 4 rrqfmnlltfgt~tg~alg~ 23 (34)
T d2e74d2 4 RRQFMNLLAFGTVTGVALGA 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhh
Confidence 33456666655555555544
No 10
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.00 E-value=2.3e+02 Score=12.56 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=9.7
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 011369 120 GVLSSAFMVGLLVASPIFA 138 (487)
Q Consensus 120 ~~~~s~~~~~~~i~~~~~g 138 (487)
||+.-...+...+...+||
T Consensus 5 gwv~llvvftwsiamvvwg 23 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWG 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHhhheeeeEEEc
Confidence 4444444445555555555
Done!