Query 011370
Match_columns 487
No_of_seqs 223 out of 1197
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 00:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 6.1E-12 1.3E-16 96.8 4.8 54 301-354 4-60 (60)
2 smart00353 HLH helix loop heli 99.2 2E-11 4.3E-16 92.5 6.0 49 306-354 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.2 1.2E-11 2.6E-16 95.0 3.8 49 302-350 2-55 (55)
4 KOG1318 Helix loop helix trans 98.9 2.5E-09 5.5E-14 112.4 6.6 65 291-355 223-291 (411)
5 cd04895 ACT_ACR_1 ACT domain-c 98.5 1.1E-06 2.4E-11 72.5 9.5 63 415-478 3-69 (72)
6 cd04927 ACT_ACR-like_2 Second 98.5 1.1E-06 2.3E-11 72.2 8.9 69 414-483 1-73 (76)
7 cd04897 ACT_ACR_3 ACT domain-c 98.4 1.3E-06 2.7E-11 72.7 9.2 67 415-482 3-73 (75)
8 KOG1319 bHLHZip transcription 98.4 1.1E-07 2.3E-12 91.2 3.0 64 300-363 61-131 (229)
9 KOG4304 Transcriptional repres 98.3 4.9E-07 1.1E-11 90.2 2.9 57 299-355 30-94 (250)
10 cd04900 ACT_UUR-like_1 ACT dom 98.2 1.1E-05 2.4E-10 65.0 10.1 66 414-480 2-72 (73)
11 cd04896 ACT_ACR-like_3 ACT dom 98.2 6.7E-06 1.5E-10 68.4 8.9 66 415-482 2-73 (75)
12 cd04925 ACT_ACR_2 ACT domain-c 98.0 6.7E-05 1.5E-09 61.0 9.6 67 415-481 2-72 (74)
13 KOG3561 Aryl-hydrocarbon recep 98.0 8.2E-06 1.8E-10 92.3 5.3 51 302-352 21-75 (803)
14 cd04926 ACT_ACR_4 C-terminal 97.8 0.0002 4.3E-09 57.9 9.5 67 414-482 2-68 (72)
15 KOG3960 Myogenic helix-loop-he 97.8 4.1E-05 8.9E-10 76.5 6.3 60 304-363 121-182 (284)
16 KOG2483 Upstream transcription 97.7 8.5E-05 1.8E-09 73.7 6.7 57 299-355 57-116 (232)
17 cd04928 ACT_TyrKc Uncharacteri 97.6 0.00055 1.2E-08 56.1 9.4 64 415-481 3-67 (68)
18 cd04899 ACT_ACR-UUR-like_2 C-t 97.6 0.00076 1.7E-08 52.7 9.8 65 415-480 2-69 (70)
19 PRK05007 PII uridylyl-transfer 97.5 0.00046 9.9E-09 79.6 10.6 79 402-481 796-878 (884)
20 KOG2588 Predicted DNA-binding 97.4 6.1E-05 1.3E-09 86.0 2.2 64 300-363 275-339 (953)
21 PRK04374 PII uridylyl-transfer 97.2 0.0017 3.6E-08 75.0 11.1 79 402-481 784-866 (869)
22 KOG0561 bHLH transcription fac 97.2 0.00022 4.7E-09 73.0 3.4 53 302-354 61-115 (373)
23 PRK01759 glnD PII uridylyl-tra 97.2 0.0015 3.2E-08 75.3 10.4 79 402-481 771-853 (854)
24 PRK00275 glnD PII uridylyl-tra 97.2 0.0021 4.6E-08 74.4 11.6 79 402-481 802-885 (895)
25 PRK03059 PII uridylyl-transfer 97.1 0.0024 5.3E-08 73.6 10.8 81 402-482 774-855 (856)
26 PF01842 ACT: ACT domain; Int 97.1 0.0064 1.4E-07 46.3 9.7 63 415-482 2-66 (66)
27 cd04873 ACT_UUR-ACR-like ACT d 97.1 0.0055 1.2E-07 47.2 9.0 64 415-479 2-68 (70)
28 PLN03217 transcription factor 97.1 0.00096 2.1E-08 57.2 5.0 53 313-365 19-77 (93)
29 KOG4029 Transcription factor H 97.1 0.00062 1.3E-08 66.6 4.5 62 299-360 107-172 (228)
30 PRK05092 PII uridylyl-transfer 96.9 0.0059 1.3E-07 70.9 11.9 79 402-481 831-914 (931)
31 PRK03381 PII uridylyl-transfer 96.8 0.0085 1.8E-07 68.5 11.3 76 402-478 695-773 (774)
32 PF13740 ACT_6: ACT domain; PD 96.7 0.0088 1.9E-07 48.8 8.0 66 413-482 2-67 (76)
33 PRK03381 PII uridylyl-transfer 96.7 0.012 2.5E-07 67.4 11.8 79 402-481 588-666 (774)
34 TIGR01693 UTase_glnD [Protein- 96.7 0.0095 2.1E-07 68.5 10.8 79 402-481 767-849 (850)
35 cd04893 ACT_GcvR_1 ACT domains 96.5 0.024 5.3E-07 46.4 9.3 64 414-481 2-65 (77)
36 PRK01759 glnD PII uridylyl-tra 96.4 0.028 6E-07 65.0 12.1 79 402-481 665-748 (854)
37 TIGR01693 UTase_glnD [Protein- 96.3 0.024 5.2E-07 65.3 11.2 70 411-481 666-740 (850)
38 PF13291 ACT_4: ACT domain; PD 96.3 0.063 1.4E-06 43.5 10.4 68 412-485 5-74 (80)
39 PRK05007 PII uridylyl-transfer 96.3 0.037 7.9E-07 64.3 12.2 79 402-481 689-772 (884)
40 COG2844 GlnD UTP:GlnB (protein 96.1 0.018 4E-07 65.9 8.4 67 402-469 779-846 (867)
41 PRK00194 hypothetical protein; 96.0 0.033 7.1E-07 46.3 7.8 67 413-481 3-69 (90)
42 PRK04374 PII uridylyl-transfer 95.7 0.065 1.4E-06 62.3 11.2 71 411-481 688-759 (869)
43 PRK00275 glnD PII uridylyl-tra 95.7 0.08 1.7E-06 61.7 11.6 69 412-481 703-777 (895)
44 cd04872 ACT_1ZPV ACT domain pr 95.5 0.066 1.4E-06 44.5 7.6 66 414-481 2-67 (88)
45 cd04875 ACT_F4HF-DF N-terminal 95.5 0.11 2.5E-06 41.5 8.7 66 416-481 2-67 (74)
46 PRK03059 PII uridylyl-transfer 95.5 0.07 1.5E-06 61.8 10.4 69 412-481 677-749 (856)
47 PRK05092 PII uridylyl-transfer 95.5 0.1 2.2E-06 60.9 11.8 80 401-481 719-804 (931)
48 cd04870 ACT_PSP_1 CT domains f 95.5 0.11 2.3E-06 42.1 8.4 64 416-482 2-65 (75)
49 cd04869 ACT_GcvR_2 ACT domains 95.4 0.14 3E-06 41.2 9.0 63 416-481 2-70 (81)
50 cd04894 ACT_ACR-like_1 ACT dom 95.3 0.085 1.8E-06 43.4 7.3 66 415-480 2-67 (69)
51 cd04887 ACT_MalLac-Enz ACT_Mal 95.3 0.26 5.6E-06 38.9 9.9 46 416-461 2-48 (74)
52 cd04886 ACT_ThrD-II-like C-ter 95.2 0.22 4.8E-06 37.9 9.0 46 416-461 1-51 (73)
53 KOG3910 Helix loop helix trans 95.1 0.021 4.6E-07 62.1 4.3 60 297-356 522-585 (632)
54 cd04876 ACT_RelA-SpoT ACT dom 94.2 0.67 1.4E-05 33.7 9.1 66 416-484 1-67 (71)
55 cd04881 ACT_HSDH-Hom ACT_HSDH_ 93.9 0.5 1.1E-05 36.5 8.5 47 414-460 1-49 (79)
56 cd04888 ACT_PheB-BS C-terminal 93.5 0.4 8.7E-06 37.8 7.4 67 415-483 2-69 (76)
57 cd04883 ACT_AcuB C-terminal AC 93.0 1.2 2.5E-05 34.8 9.2 62 415-483 3-66 (72)
58 PRK04435 hypothetical protein; 92.8 0.69 1.5E-05 42.8 8.8 72 410-483 66-138 (147)
59 cd04877 ACT_TyrR N-terminal AC 92.3 1.2 2.6E-05 35.8 8.7 37 415-452 2-38 (74)
60 cd02116 ACT ACT domains are co 92.2 1 2.2E-05 30.8 7.2 35 416-450 1-35 (60)
61 cd04874 ACT_Af1403 N-terminal 92.0 1.4 3E-05 33.6 8.3 63 415-482 2-65 (72)
62 cd04879 ACT_3PGDH-like ACT_3PG 91.9 0.95 2.1E-05 34.1 7.2 62 416-483 2-65 (71)
63 cd04878 ACT_AHAS N-terminal AC 91.8 1 2.2E-05 34.1 7.3 66 415-484 2-69 (72)
64 PRK07334 threonine dehydratase 91.8 1.3 2.8E-05 46.9 10.6 51 411-461 324-379 (403)
65 cd04909 ACT_PDH-BS C-terminal 91.7 1.6 3.5E-05 34.0 8.6 64 415-484 3-68 (69)
66 cd04903 ACT_LSD C-terminal ACT 91.2 1.3 2.9E-05 33.4 7.5 62 416-483 2-65 (71)
67 KOG3560 Aryl-hydrocarbon recep 91.0 0.22 4.7E-06 55.2 3.9 45 304-348 28-76 (712)
68 cd04882 ACT_Bt0572_2 C-termina 90.6 1.5 3.2E-05 33.3 7.2 59 416-483 2-62 (65)
69 KOG3558 Hypoxia-inducible fact 89.6 0.22 4.7E-06 56.4 2.5 50 301-350 46-99 (768)
70 cd04908 ACT_Bt0572_1 N-termina 89.5 3.1 6.7E-05 32.6 8.4 61 415-484 3-63 (66)
71 KOG4447 Transcription factor T 89.5 0.2 4.3E-06 47.5 1.8 50 302-351 79-130 (173)
72 PRK06027 purU formyltetrahydro 89.3 2.4 5.1E-05 43.4 9.6 67 413-481 6-74 (286)
73 cd04884 ACT_CBS C-terminal ACT 88.8 3.1 6.6E-05 33.0 8.0 62 416-480 2-66 (72)
74 PRK08577 hypothetical protein; 88.7 3.3 7.1E-05 37.4 9.1 68 413-482 56-125 (136)
75 cd04902 ACT_3PGDH-xct C-termin 88.2 2 4.3E-05 33.4 6.5 63 417-485 3-67 (73)
76 TIGR00655 PurU formyltetrahydr 87.9 2.9 6.3E-05 42.8 9.1 63 415-479 2-66 (280)
77 cd04880 ACT_AAAH-PDT-like ACT 87.7 4.9 0.00011 32.1 8.6 44 417-460 3-47 (75)
78 PRK13011 formyltetrahydrofolat 87.6 3.4 7.5E-05 42.3 9.4 66 413-481 7-74 (286)
79 cd04905 ACT_CM-PDT C-terminal 87.0 6 0.00013 32.1 8.8 46 416-461 4-50 (80)
80 cd04889 ACT_PDH-BS-like C-term 87.0 2.7 5.8E-05 31.6 6.3 45 416-460 1-46 (56)
81 PRK11589 gcvR glycine cleavage 86.5 1.9 4.2E-05 41.8 6.6 65 413-481 8-72 (190)
82 PRK13010 purU formyltetrahydro 86.3 3 6.5E-05 42.9 8.2 67 414-481 10-78 (289)
83 COG2844 GlnD UTP:GlnB (protein 86.3 3 6.5E-05 48.6 8.9 58 402-460 674-732 (867)
84 KOG3559 Transcriptional regula 85.3 0.91 2E-05 49.1 4.0 43 307-349 7-53 (598)
85 cd04901 ACT_3PGDH C-terminal A 84.4 0.95 2.1E-05 35.0 2.8 63 416-484 2-64 (69)
86 KOG3898 Transcription factor N 83.4 1.4 3.1E-05 44.5 4.3 53 300-352 71-126 (254)
87 PRK10872 relA (p)ppGpp synthet 81.1 16 0.00034 42.6 11.9 59 403-461 652-716 (743)
88 PRK11092 bifunctional (p)ppGpp 80.0 17 0.00037 41.9 11.8 77 403-485 612-693 (702)
89 cd04931 ACT_PAH ACT domain of 79.7 13 0.00028 32.0 8.2 47 414-460 15-62 (90)
90 PRK06382 threonine dehydratase 77.9 11 0.00023 40.2 8.7 71 410-484 327-402 (406)
91 KOG4395 Transcription factor A 77.1 3.4 7.4E-05 42.3 4.5 53 302-354 175-230 (285)
92 TIGR00691 spoT_relA (p)ppGpp s 77.0 24 0.00053 40.5 11.8 59 403-461 596-659 (683)
93 PRK00227 glnD PII uridylyl-tra 73.9 16 0.00034 42.2 9.2 64 416-481 549-613 (693)
94 cd04904 ACT_AAAH ACT domain of 73.9 18 0.00038 29.4 7.2 44 418-461 5-49 (74)
95 cd04885 ACT_ThrD-I Tandem C-te 71.4 24 0.00053 27.9 7.3 63 417-484 2-65 (68)
96 COG3830 ACT domain-containing 67.4 8.8 0.00019 33.6 4.2 70 414-485 4-73 (90)
97 TIGR00119 acolac_sm acetolacta 66.5 35 0.00075 32.4 8.4 62 415-480 3-66 (157)
98 TIGR01127 ilvA_1Cterm threonin 66.1 32 0.00069 36.0 8.9 70 410-483 302-376 (380)
99 COG0788 PurU Formyltetrahydrof 65.6 26 0.00057 36.4 7.9 67 413-481 7-75 (287)
100 PF05088 Bac_GDH: Bacterial NA 65.4 30 0.00065 43.4 9.7 69 412-481 488-561 (1528)
101 PRK11589 gcvR glycine cleavage 64.0 37 0.00081 33.0 8.3 67 414-481 96-166 (190)
102 PRK11152 ilvM acetolactate syn 64.0 44 0.00094 28.1 7.6 62 415-481 5-68 (76)
103 PRK11895 ilvH acetolactate syn 63.9 41 0.0009 32.0 8.4 61 415-479 4-66 (161)
104 PRK06737 acetolactate synthase 62.7 36 0.00079 28.7 6.9 62 414-479 3-66 (76)
105 PRK08526 threonine dehydratase 62.1 59 0.0013 34.9 10.2 71 410-484 323-398 (403)
106 PRK08198 threonine dehydratase 62.0 48 0.001 35.0 9.4 71 410-484 324-399 (404)
107 PF13710 ACT_5: ACT domain; PD 61.9 51 0.0011 26.3 7.4 56 422-481 1-58 (63)
108 COG4492 PheB ACT domain-contai 57.8 52 0.0011 31.1 7.7 68 410-479 69-137 (150)
109 cd04930 ACT_TH ACT domain of t 54.7 76 0.0016 28.5 8.1 45 416-460 44-89 (115)
110 cd04906 ACT_ThrD-I_1 First of 53.6 1.1E+02 0.0023 25.4 8.3 65 415-484 3-68 (85)
111 cd04929 ACT_TPH ACT domain of 53.5 75 0.0016 26.2 7.3 55 419-478 6-61 (74)
112 cd04892 ACT_AK-like_2 ACT doma 53.3 50 0.0011 24.1 5.7 33 416-448 3-38 (65)
113 COG4747 ACT domain-containing 52.8 64 0.0014 30.1 7.3 45 415-459 5-49 (142)
114 CHL00100 ilvH acetohydroxyacid 52.2 70 0.0015 30.9 7.9 63 415-481 4-68 (174)
115 PRK13562 acetolactate synthase 50.3 58 0.0013 28.2 6.3 62 415-479 4-67 (84)
116 KOG3582 Mlx interactors and re 44.9 8.3 0.00018 44.4 0.5 64 300-363 650-718 (856)
117 cd04922 ACT_AKi-HSDH-ThrA_2 AC 44.7 77 0.0017 23.9 5.7 33 416-448 4-39 (66)
118 PF02120 Flg_hook: Flagellar h 41.4 1.1E+02 0.0024 24.8 6.5 46 402-448 27-78 (85)
119 PRK00227 glnD PII uridylyl-tra 40.4 38 0.00083 39.2 4.8 43 414-460 632-674 (693)
120 KOG4447 Transcription factor T 35.2 28 0.00061 33.5 2.3 42 308-349 29-72 (173)
121 COG0317 SpoT Guanosine polypho 35.0 2.9E+02 0.0062 32.4 10.6 60 402-461 612-676 (701)
122 cd04919 ACT_AK-Hom3_2 ACT doma 34.8 1.5E+02 0.0032 22.5 6.0 27 422-448 13-39 (66)
123 PRK11899 prephenate dehydratas 34.7 2.3E+02 0.0051 29.2 9.0 46 416-461 197-243 (279)
124 PRK08639 threonine dehydratase 34.4 1.9E+02 0.004 31.1 8.6 71 410-484 333-405 (420)
125 cd04868 ACT_AK-like ACT domain 34.2 1.7E+02 0.0036 20.6 6.0 26 423-448 13-38 (60)
126 cd04890 ACT_AK-like_1 ACT doma 33.8 66 0.0014 24.4 3.8 25 422-446 12-36 (62)
127 COG3978 Acetolactate synthase 31.9 2.7E+02 0.0057 24.4 7.3 60 414-478 4-65 (86)
128 cd04937 ACT_AKi-DapG-BS_2 ACT 30.6 2.5E+02 0.0055 21.6 7.1 24 422-445 13-36 (64)
129 PF02344 Myc-LZ: Myc leucine z 29.8 51 0.0011 23.9 2.3 18 308-325 12-29 (32)
130 cd04916 ACT_AKiii-YclM-BS_2 AC 29.0 2.5E+02 0.0054 21.0 7.2 33 416-448 4-39 (66)
131 TIGR02079 THD1 threonine dehyd 28.9 2.8E+02 0.0061 29.8 8.8 71 410-484 322-394 (409)
132 PRK08178 acetolactate synthase 28.4 2.9E+02 0.0064 24.5 7.3 63 414-479 9-71 (96)
133 cd04924 ACT_AK-Arch_2 ACT doma 27.6 2.6E+02 0.0057 20.8 7.3 58 416-481 4-64 (66)
134 PRK15385 magnesium transport p 26.8 3.6E+02 0.0079 27.3 8.6 68 412-482 141-214 (225)
135 KOG3582 Mlx interactors and re 25.9 26 0.00056 40.6 0.5 65 295-362 781-850 (856)
136 PF05687 DUF822: Plant protein 25.3 59 0.0013 31.0 2.6 27 300-326 10-36 (150)
137 PRK13702 replication protein; 25.1 2.2E+02 0.0048 24.9 5.8 27 303-329 22-50 (85)
138 cd04918 ACT_AK1-AT_2 ACT domai 25.0 2.6E+02 0.0057 21.8 5.9 32 422-453 12-43 (65)
139 PRK10820 DNA-binding transcrip 24.9 1.2E+02 0.0026 33.5 5.3 36 415-450 2-37 (520)
140 TIGR01124 ilvA_2Cterm threonin 22.3 4.8E+02 0.01 29.0 9.3 69 410-484 322-391 (499)
141 PRK12483 threonine dehydratase 22.1 5.3E+02 0.011 29.0 9.6 69 410-484 342-412 (521)
142 COG3074 Uncharacterized protei 22.1 1.1E+02 0.0025 26.0 3.4 26 339-364 13-38 (79)
143 PF09849 DUF2076: Uncharacteri 22.0 2E+02 0.0043 29.4 5.8 17 346-362 57-73 (247)
144 PRK11020 hypothetical protein; 21.9 1.4E+02 0.0031 27.4 4.2 52 309-360 3-54 (118)
145 PLN02705 beta-amylase 21.2 1E+02 0.0023 35.5 3.9 25 301-325 84-108 (681)
146 PF14689 SPOB_a: Sensor_kinase 21.1 2.7E+02 0.0058 22.2 5.3 41 310-357 17-57 (62)
147 COG3283 TyrR Transcriptional r 21.1 1.2E+02 0.0026 33.4 4.2 65 415-485 2-66 (511)
148 cd04913 ACT_AKii-LysC-BS-like_ 21.0 3.7E+02 0.0079 20.2 6.4 26 421-446 10-35 (75)
149 cd04915 ACT_AK-Ectoine_2 ACT d 20.8 3E+02 0.0065 21.7 5.5 28 423-450 14-41 (66)
150 PRK11790 D-3-phosphoglycerate 20.6 1.5E+02 0.0032 32.0 4.8 64 414-483 339-402 (409)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.26 E-value=6.1e-12 Score=96.84 Aligned_cols=54 Identities=37% Similarity=0.649 Sum_probs=50.0
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhccCCCC---CcCChhhHHHHHHHHHHHHHHHHH
Q 011370 301 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRIN 354 (487)
Q Consensus 301 ~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~qv~ 354 (487)
.+..|+++||+||.+||+.|..|+.+||.. .|++|++||..||+||+.|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 456799999999999999999999999987 899999999999999999998763
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.22 E-value=2e-11 Score=92.45 Aligned_cols=49 Identities=41% Similarity=0.649 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCC---CCcCChhhHHHHHHHHHHHHHHHHH
Q 011370 306 LMAERRRRKKLNDRLYMLRSVVPK---ISKMDRASILGDAIDYLKELLQRIN 354 (487)
Q Consensus 306 ~~~ERrRR~kiN~~~~~LRsLVP~---~sK~dKaSIL~dAI~YIk~Lq~qv~ 354 (487)
+.+||+||.+||+.|..|+++||. ..|++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6789999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.20 E-value=1.2e-11 Score=95.04 Aligned_cols=49 Identities=45% Similarity=0.672 Sum_probs=45.9
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCCC-----CcCChhhHHHHHHHHHHHHH
Q 011370 302 PAKNLMAERRRRKKLNDRLYMLRSVVPKI-----SKMDRASILGDAIDYLKELL 350 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~~-----sK~dKaSIL~dAI~YIk~Lq 350 (487)
+..|+.+||+||.+||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 35799999999999999999999999975 68999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.88 E-value=2.5e-09 Score=112.41 Aligned_cols=65 Identities=29% Similarity=0.477 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhhccCCCC----CcCChhhHHHHHHHHHHHHHHHHHH
Q 011370 291 VGDNKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQRIND 355 (487)
Q Consensus 291 ~~~~k~rr~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~qv~~ 355 (487)
......|.+.++..|+++|||||++||++|.+|..|||.+ .|..|..||..+++||++||+..++
T Consensus 223 ~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 223 DATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred ccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3344456677889999999999999999999999999985 4778999999999999999987663
No 5
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.47 E-value=1.1e-06 Score=72.49 Aligned_cols=63 Identities=32% Similarity=0.458 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCH----HHHHHHHH
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLP----KQIKSVLL 478 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~----eeIkaaLl 478 (487)
.|+|.+++|||+|.+|.++|..+||+|..|.|+|.++++.++|.+. ...|..+.- ++|+++|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~-d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVT-DQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEE-CCCCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999997 456666653 44454443
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.45 E-value=1.1e-06 Score=72.18 Aligned_cols=69 Identities=25% Similarity=0.318 Sum_probs=58.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEeeecCCcc---cCHHHHHHHHHHhcCC
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQD---VLPKQIKSVLLDTAGF 483 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~-~ng~v~~tf~aEq~keG~~---v~~eeIkaaLl~saG~ 483 (487)
+.|+|.|+.|||+|.+|..+|..+||+|+.|.|++ .+++++++|.+.. .++.. ...++|++.|.+.+|.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-ARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCCCCCHHHHHHHHHHHHHHHch
Confidence 36899999999999999999999999999999996 8999999999963 33331 3456788999999885
No 7
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.44 E-value=1.3e-06 Score=72.74 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=58.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccC----HHHHHHHHHHhcC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL----PKQIKSVLLDTAG 482 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~----~eeIkaaLl~saG 482 (487)
.|+|.|++|||||.+|..+|-.+|++|.+|.|+|.++++.++|.+.. .+|..+. .+.|+++|+.+++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999974 5676554 4677777777654
No 8
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.44 E-value=1.1e-07 Score=91.22 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=55.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhhccCCCC-------CcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011370 300 GLPAKNLMAERRRRKKLNDRLYMLRSVVPKI-------SKMDRASILGDAIDYLKELLQRINDLHNELEST 363 (487)
Q Consensus 300 ~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~-------sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl 363 (487)
+++..|.-+||+||+.||..+..|+.|||.+ .|+.||.||..+|+||.+|++++.+-+.+...+
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999963 388899999999999999999887777665444
No 9
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.25 E-value=4.9e-07 Score=90.23 Aligned_cols=57 Identities=25% Similarity=0.436 Sum_probs=49.3
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHhhccCCC--------CCcCChhhHHHHHHHHHHHHHHHHHH
Q 011370 299 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPK--------ISKMDRASILGDAIDYLKELLQRIND 355 (487)
Q Consensus 299 ~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~--------~sK~dKaSIL~dAI~YIk~Lq~qv~~ 355 (487)
..++..|-+.|||||.|||+.|.+|+.|||. .+|++||.||.-|++|+++|+...+.
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 3455667799999999999999999999994 37999999999999999999976443
No 10
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=1.1e-05 Score=65.01 Aligned_cols=66 Identities=33% Similarity=0.562 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEeeecCCcccC----HHHHHHHHHHh
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVL----PKQIKSVLLDT 480 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-ng~v~~tf~aEq~keG~~v~----~eeIkaaLl~s 480 (487)
..|.|.|+.++|+|.+|..+|..+||+|+.|.|.+. +++++++|.+.. .++.... .++|+..|.+.
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhh
Confidence 358899999999999999999999999999999888 799999999963 4454443 34455555543
No 11
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=6.7e-06 Score=68.43 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=56.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEeeecCCccc----CHHHHHHHHHHhcC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS--CFNGFALDVFRAEQCREGQDV----LPKQIKSVLLDTAG 482 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS--~~ng~v~~tf~aEq~keG~~v----~~eeIkaaLl~saG 482 (487)
.|+|.|.+|||||.+|.++|..+||+|..|.|+ +.+.++.++|.+ ... |..+ ..+.|+++|++++.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~-g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSD-GKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCC-CCccCCHHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999999 999999999999 544 4333 25678888887764
No 12
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=6.7e-05 Score=61.03 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=54.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcc----cCHHHHHHHHHHhc
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQD----VLPKQIKSVLLDTA 481 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~----v~~eeIkaaLl~sa 481 (487)
.|+|.|+.+||+|.+|..+|..+|++|+.|.+++.++.++++|.+.....+.. ...++|++.|.+.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999999863221332 22467777776654
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.95 E-value=8.2e-06 Score=92.35 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=47.9
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCCC----CcCChhhHHHHHHHHHHHHHHH
Q 011370 302 PAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQR 352 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~q 352 (487)
+..|..+|||||+|||..+.+|.+|||.+ .|+||.+||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999974 6999999999999999999984
No 14
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.79 E-value=0.0002 Score=57.92 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
..|.|.++.++|+|.+|..+|.+++++|++|.+.+.++.++++|++.. .++..... +..+.|.+++|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcCCH-HHHHHHHHHhc
Confidence 357788999999999999999999999999999999999999999964 44554443 45567888877
No 15
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.78 E-value=4.1e-05 Score=76.50 Aligned_cols=60 Identities=27% Similarity=0.406 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHHHHHHHHh-hccCCC-CCcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011370 304 KNLMAERRRRKKLNDRLYML-RSVVPK-ISKMDRASILGDAIDYLKELLQRINDLHNELEST 363 (487)
Q Consensus 304 ~H~~~ERrRR~kiN~~~~~L-RsLVP~-~sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl 363 (487)
.-.|+||||=+|+|+.|.+| |..+++ ..++-|..||..||+||..||.-++++.+....+
T Consensus 121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 34699999999999999999 666666 4678999999999999999999888887665433
No 16
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.67 E-value=8.5e-05 Score=73.75 Aligned_cols=57 Identities=26% Similarity=0.361 Sum_probs=47.6
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHhhccCCCC--CcC-ChhhHHHHHHHHHHHHHHHHHH
Q 011370 299 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI--SKM-DRASILGDAIDYLKELLQRIND 355 (487)
Q Consensus 299 ~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~--sK~-dKaSIL~dAI~YIk~Lq~qv~~ 355 (487)
...+..|+.-||+||..|.+.|..|+.+||.. .+. ..++||..|..||+.|+.+...
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~ 116 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSAT 116 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence 44567899999999999999999999999973 233 3689999999999999875433
No 17
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.61 E-value=0.00055 Score=56.15 Aligned_cols=64 Identities=25% Similarity=0.324 Sum_probs=52.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS-CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS-~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.|-|.|+.+||+|.+|..+|..+||+|+.|.|. +.+|+++++|.+...+ .-....|.++|++++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~---~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK---RGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC---ccchHHHHHHHHHhh
Confidence 477899999999999999999999999999988 5589999999996432 234567777777764
No 18
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00076 Score=52.72 Aligned_cols=65 Identities=31% Similarity=0.480 Sum_probs=52.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccC---HHHHHHHHHHh
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL---PKQIKSVLLDT 480 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~---~eeIkaaLl~s 480 (487)
.|.|.|..++|+|.+|+.+|.+++++|.++.+.+.++.++++|.+.. ..+.... .++|++.|.+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcCCHHHHHHHHHHHHhh
Confidence 47889999999999999999999999999999999999999999864 3333222 34466666543
No 19
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.51 E-value=0.00046 Score=79.64 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=63.7
Q ss_pred ceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccC---HHHHHHHH
Q 011370 402 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL---PKQIKSVL 477 (487)
Q Consensus 402 ~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~---~eeIkaaL 477 (487)
++|.+... .+.--.|+|.|.+|||||.+|.++|..+||+|..|.|+|.++++.++|.+. ...|..+. .++|+++|
T Consensus 796 ~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~-~~~g~~l~~~~~~~l~~~L 874 (884)
T PRK05007 796 TEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILA-TADRRALNEELQQELRQRL 874 (884)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEE-cCCCCcCCHHHHHHHHHHH
Confidence 34555432 234456999999999999999999999999999999999999999999996 34566555 46778888
Q ss_pred HHhc
Q 011370 478 LDTA 481 (487)
Q Consensus 478 l~sa 481 (487)
+.++
T Consensus 875 ~~~l 878 (884)
T PRK05007 875 TEAL 878 (884)
T ss_pred HHHH
Confidence 7766
No 20
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.43 E-value=6.1e-05 Score=86.02 Aligned_cols=64 Identities=28% Similarity=0.460 Sum_probs=56.6
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhhccCCC-CCcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011370 300 GLPAKNLMAERRRRKKLNDRLYMLRSVVPK-ISKMDRASILGDAIDYLKELLQRINDLHNELEST 363 (487)
Q Consensus 300 ~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~-~sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl 363 (487)
.++.+|+++|||-|..||+++.+|+.+||. ..|..|.++|..||+||++|+...+.++.+.+++
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 567899999999999999999999999997 5799999999999999999998877776655443
No 21
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.24 E-value=0.0017 Score=75.04 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=64.4
Q ss_pred ceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCccc---CHHHHHHHH
Q 011370 402 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDV---LPKQIKSVL 477 (487)
Q Consensus 402 ~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v---~~eeIkaaL 477 (487)
+.|.+... ......|+|.+..+||||.+|..+|..+||+|+.|.|+|.+++++++|.+.. .+|... ..++|+++|
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~~~l~~~L 862 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD-EHDRPLSESARQALRDAL 862 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHHHHHHHHH
Confidence 45666543 2346789999999999999999999999999999999999999999999963 344332 237888888
Q ss_pred HHhc
Q 011370 478 LDTA 481 (487)
Q Consensus 478 l~sa 481 (487)
++++
T Consensus 863 ~~~l 866 (869)
T PRK04374 863 CACL 866 (869)
T ss_pred HHHh
Confidence 8876
No 22
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.24 E-value=0.00022 Score=73.05 Aligned_cols=53 Identities=28% Similarity=0.444 Sum_probs=46.1
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCC--CCcCChhhHHHHHHHHHHHHHHHHH
Q 011370 302 PAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIDYLKELLQRIN 354 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~--~sK~dKaSIL~dAI~YIk~Lq~qv~ 354 (487)
+.--+.-||||=.-||..|..||+|+|. .-|..||.||+.+.+||.+|+.+.-
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 3444677999999999999999999996 5799999999999999999987543
No 23
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.23 E-value=0.0015 Score=75.29 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=63.5
Q ss_pred ceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccC---HHHHHHHH
Q 011370 402 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL---PKQIKSVL 477 (487)
Q Consensus 402 ~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~---~eeIkaaL 477 (487)
++|.+..- .+.--.|+|.+.+|||||.+|.++|.++|++|..|.|+|.++++.++|.+.. ..|..+. .++|+++|
T Consensus 771 ~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~~~l~~~L 849 (854)
T PRK01759 771 TEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEERKALKSRL 849 (854)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHHHHHHHHH
Confidence 45555432 2234679999999999999999999999999999999999999999999974 4555443 37788888
Q ss_pred HHhc
Q 011370 478 LDTA 481 (487)
Q Consensus 478 l~sa 481 (487)
++++
T Consensus 850 ~~~l 853 (854)
T PRK01759 850 LSNL 853 (854)
T ss_pred HHHh
Confidence 8765
No 24
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.22 E-value=0.0021 Score=74.40 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=62.9
Q ss_pred ceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCccc----CHHHHHHH
Q 011370 402 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDV----LPKQIKSV 476 (487)
Q Consensus 402 ~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v----~~eeIkaa 476 (487)
+.|.+... ......|.|+|..+||||.+|..+|..+||+|+.|.|+|.+++++++|.+.. .+|..+ ..++|+++
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~ 880 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDA 880 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHH
Confidence 45555543 2245779999999999999999999999999999999999999999999964 344433 24567888
Q ss_pred HHHhc
Q 011370 477 LLDTA 481 (487)
Q Consensus 477 Ll~sa 481 (487)
|.+.+
T Consensus 881 L~~~L 885 (895)
T PRK00275 881 ICEQL 885 (895)
T ss_pred HHHHH
Confidence 87765
No 25
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.12 E-value=0.0024 Score=73.57 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=62.2
Q ss_pred ceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHh
Q 011370 402 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDT 480 (487)
Q Consensus 402 ~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~s 480 (487)
+.|.+... ......|.|.|..+||+|.+|..+|..+||+|+.|.|+|.+++++++|.+...+....-..+.|++.|.++
T Consensus 774 ~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~ 853 (856)
T PRK03059 774 PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDA 853 (856)
T ss_pred ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 34555432 23467899999999999999999999999999999999999999999999421111123356788888776
Q ss_pred cC
Q 011370 481 AG 482 (487)
Q Consensus 481 aG 482 (487)
+.
T Consensus 854 L~ 855 (856)
T PRK03059 854 LA 855 (856)
T ss_pred hc
Confidence 54
No 26
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.11 E-value=0.0064 Score=46.35 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=47.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC--EEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG--FALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng--~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
.|.|.|+.+||+|.+|.++|.++|++|.++.+....+ ..+..+.... ....+++.+.|.+..|
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-----EEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-----GHGHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-----CCCHHHHHHHHHcccC
Confidence 5888999999999999999999999999999999987 3333332221 2456677777766543
No 27
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.06 E-value=0.0055 Score=47.24 Aligned_cols=64 Identities=34% Similarity=0.526 Sum_probs=50.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcc---cCHHHHHHHHHH
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQD---VLPKQIKSVLLD 479 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~---v~~eeIkaaLl~ 479 (487)
.|.|.|..++|+|.+|+.+|.+.++.|.++.+.+.++....+|++.. .++.. ...+.|++.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPLDPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcCCHHHHHHHHHHHHh
Confidence 47789999999999999999999999999999998888888998864 33222 234445555544
No 28
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.06 E-value=0.00096 Score=57.22 Aligned_cols=53 Identities=25% Similarity=0.552 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhccCCCC------CcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011370 313 RKKLNDRLYMLRSVVPKI------SKMDRASILGDAIDYLKELLQRINDLHNELESTPT 365 (487)
Q Consensus 313 R~kiN~~~~~LRsLVP~~------sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl~~ 365 (487)
-++|++.+..|+.|+|.. .|..-+-+|.++..||+.|+.+|..|.+++.++-.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999963 34555669999999999999999999999877653
No 29
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.05 E-value=0.00062 Score=66.64 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=52.5
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHhhccCCC----CCcCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011370 299 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLKELLQRINDLHNEL 360 (487)
Q Consensus 299 ~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~----~sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~ 360 (487)
...+..++.+||+|=+.+|..|..||.+||. ..|..|..+|.-||.||+.|+.-++.-+..+
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 3445567788999999999999999999995 4688999999999999999998777665544
No 30
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.95 E-value=0.0059 Score=70.93 Aligned_cols=79 Identities=32% Similarity=0.422 Sum_probs=63.6
Q ss_pred ceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCccc----CHHHHHHH
Q 011370 402 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDV----LPKQIKSV 476 (487)
Q Consensus 402 ~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v----~~eeIkaa 476 (487)
+.|.+... ......|.|.|..+||+|.+|..+|.++|++|..|.|.|.++++.++|.+.. .+|..+ ..++|++.
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRA 909 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHH
Confidence 45666543 2345789999999999999999999999999999999999999999999974 334432 24678888
Q ss_pred HHHhc
Q 011370 477 LLDTA 481 (487)
Q Consensus 477 Ll~sa 481 (487)
|.+.+
T Consensus 910 L~~~L 914 (931)
T PRK05092 910 LLAAL 914 (931)
T ss_pred HHHHh
Confidence 88776
No 31
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.78 E-value=0.0085 Score=68.46 Aligned_cols=76 Identities=26% Similarity=0.347 Sum_probs=59.5
Q ss_pred ceEEEEEec-CcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccC--HHHHHHHHH
Q 011370 402 ARVEVRIRE-GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL--PKQIKSVLL 478 (487)
Q Consensus 402 ~~VEV~vie-G~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~--~eeIkaaLl 478 (487)
+.|.+.... +....|+|.|..+||+|.+|..+|..+|++|+.|.|+|.++.++++|.+. ..+|..+. .+.|+++|+
T Consensus 695 ~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~-d~~g~~~~~~~~~l~~~L~ 773 (774)
T PRK03381 695 PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVT-GAAGGPLADARAAVEQAVL 773 (774)
T ss_pred cEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEE-CCCCCcCchHHHHHHHHhh
Confidence 355554432 23578999999999999999999999999999999999999999999996 34554443 455555554
No 32
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.72 E-value=0.0088 Score=48.79 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=54.4
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011370 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
.+.|++.+++|||++..|..+|.+.|.+|..++.++.++.+..++.++.. .-..++|++.|.+.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~----~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP----EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC----cccHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999998888743 2367888888877643
No 33
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.72 E-value=0.012 Score=67.39 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=62.6
Q ss_pred ceEEEEEecCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 402 ARVEVRIREGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 402 ~~VEV~vieG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
+.|.++......+.|.|+|..+||++.+|..+|..+|++|++|.|.+.+|.++++|.+.. ..|.....++|++.|.+.+
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcchHHHHHHHHHHHH
Confidence 445554322346789999999999999999999999999999999999999999999963 3444344577777776654
No 34
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.68 E-value=0.0095 Score=68.47 Aligned_cols=79 Identities=32% Similarity=0.413 Sum_probs=63.1
Q ss_pred ceEEEEEec-CcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccC---HHHHHHHH
Q 011370 402 ARVEVRIRE-GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL---PKQIKSVL 477 (487)
Q Consensus 402 ~~VEV~vie-G~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~---~eeIkaaL 477 (487)
+.|.+.... ..-..|+|.|.+|||+|.+|.++|..+|++|.+|.|+|.++++.++|.+.. ..|.... .+.|+++|
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~~~~~~l~~~L 845 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTDEEEQRLLEVL 845 (850)
T ss_pred CeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCHHHHHHHHHHH
Confidence 355554322 235679999999999999999999999999999999999999999999963 4454433 57788888
Q ss_pred HHhc
Q 011370 478 LDTA 481 (487)
Q Consensus 478 l~sa 481 (487)
+.++
T Consensus 846 ~~~l 849 (850)
T TIGR01693 846 AASV 849 (850)
T ss_pred HHHh
Confidence 7765
No 35
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.51 E-value=0.024 Score=46.40 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=54.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
+.|.+.|+++||+..+|-+.|.+.|.+|..++....++.++..+.++. . ....++|++.|...+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~-~---~~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG-S---WDAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe-c---cccHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999888777764 2 246788888777655
No 36
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.38 E-value=0.028 Score=65.03 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=60.8
Q ss_pred ceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEeeecCCcccCH---HHHHHH
Q 011370 402 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQDVLP---KQIKSV 476 (487)
Q Consensus 402 ~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~-~ng~v~~tf~aEq~keG~~v~~---eeIkaa 476 (487)
+.|.++.. ......|.|.|+.++|+|.+|..+|..+||+|+.|.|.+ .+|.++++|.+.. .+|..+.. +.|++.
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~~~~~~~l~~~ 743 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLEFDRRRQLEQA 743 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCCHHHHHHHHHH
Confidence 45555432 234578999999999999999999999999999999977 8999999999974 34554443 346666
Q ss_pred HHHhc
Q 011370 477 LLDTA 481 (487)
Q Consensus 477 Ll~sa 481 (487)
|.+++
T Consensus 744 L~~aL 748 (854)
T PRK01759 744 LTKAL 748 (854)
T ss_pred HHHHH
Confidence 66654
No 37
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.34 E-value=0.024 Score=65.27 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=57.3
Q ss_pred CcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEeeecCCcccC----HHHHHHHHHHhc
Q 011370 411 GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS-CFNGFALDVFRAEQCREGQDVL----PKQIKSVLLDTA 481 (487)
Q Consensus 411 G~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS-~~ng~v~~tf~aEq~keG~~v~----~eeIkaaLl~sa 481 (487)
.....|.|.+.+++|+|.+|..+|..+||+|+.|.|. +.+|.++++|.+.. ..|..+. .+.|++.|.+.+
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHH
Confidence 3467799999999999999999999999999999999 88999999999974 3444333 345666766665
No 38
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.28 E-value=0.063 Score=43.52 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=51.7
Q ss_pred cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCCC
Q 011370 412 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFHD 485 (487)
Q Consensus 412 ~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~~ 485 (487)
..+.|+|.|..++|+|.+|..+|.+.++.|.++++... ++.+.-.|.++. ...++|...+.+.-...|
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~~i~~ 74 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLRQIPG 74 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHCTSTT
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHHCCCC
Confidence 35778999999999999999999999999999999984 788888888886 345666666554444433
No 39
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.26 E-value=0.037 Score=64.30 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=60.3
Q ss_pred ceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEeeecCCcccCH---HHHHHH
Q 011370 402 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVLP---KQIKSV 476 (487)
Q Consensus 402 ~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-ng~v~~tf~aEq~keG~~v~~---eeIkaa 476 (487)
+.|.++.. ......|.|+|..++|+|.+|..+|..+||+|+.|.|.+. +|.++++|.+.. .+|..+.. ++|++.
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~~~~~~~I~~~ 767 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLSQDRHQVIRKA 767 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCCHHHHHHHHHH
Confidence 34555442 2346789999999999999999999999999999998866 559999999963 44544443 346777
Q ss_pred HHHhc
Q 011370 477 LLDTA 481 (487)
Q Consensus 477 Ll~sa 481 (487)
|.+++
T Consensus 768 L~~aL 772 (884)
T PRK05007 768 LEQAL 772 (884)
T ss_pred HHHHH
Confidence 77665
No 40
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.018 Score=65.88 Aligned_cols=67 Identities=27% Similarity=0.378 Sum_probs=55.6
Q ss_pred ceEEEEEec-CcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccC
Q 011370 402 ARVEVRIRE-GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL 469 (487)
Q Consensus 402 ~~VEV~vie-G~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~ 469 (487)
+.|.+.... .+...|++.+..|||+|..|-.+|..++|+|++|.|+|++.++.++|.+. ...|+.+.
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt-~~~~~~l~ 846 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT-DADGQALN 846 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEe-ccccccCC
Confidence 456655432 23567999999999999999999999999999999999999999999996 45566653
No 41
>PRK00194 hypothetical protein; Validated
Probab=96.05 E-value=0.033 Score=46.26 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=52.7
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|.|.|+++||++.+|.+.|-+.|++|...+..+.++.+.-.+.+.-. +.....+.|++.|....
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999988888877776666532 22344677877666544
No 42
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.74 E-value=0.065 Score=62.27 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=55.8
Q ss_pred CcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 411 GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 411 G~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~-~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.....|.|.|..++|+|.+|.-+|..+||+|+.|.|.+ .+|.++++|.+....+......++|++.|.+.+
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999986 699999999996432221223445666665544
No 43
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.68 E-value=0.08 Score=61.66 Aligned_cols=69 Identities=23% Similarity=0.425 Sum_probs=55.2
Q ss_pred cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEeeecCCccc-----CHHHHHHHHHHhc
Q 011370 412 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVI-SCFNGFALDVFRAEQCREGQDV-----LPKQIKSVLLDTA 481 (487)
Q Consensus 412 ~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsI-S~~ng~v~~tf~aEq~keG~~v-----~~eeIkaaLl~sa 481 (487)
....|.|.|..+||+|.+|..+|..+||+|+.|.| ++-+|.++++|.+.. .+|..+ ..++|++.|.+.+
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999997 567899999999964 334331 2344667776654
No 44
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.52 E-value=0.066 Score=44.50 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
+.|.+.|+++||++.+|.+.|-+.|++|...+..+.++.+.-.+.+.- . +.....++|+..|...+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~-~-~~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI-S-ESNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe-C-CCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999888888777776653 2 22456788887766544
No 45
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.52 E-value=0.11 Score=41.55 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=46.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
|+|.|+.++|++.+|.+.|-++|+++...+..+..+-....++++..-....+..++|+++|...+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999998885322112222333211111356888888776654
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.52 E-value=0.07 Score=61.85 Aligned_cols=69 Identities=19% Similarity=0.353 Sum_probs=55.1
Q ss_pred cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEeeecCCcc---cCHHHHHHHHHHhc
Q 011370 412 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVI-SCFNGFALDVFRAEQCREGQD---VLPKQIKSVLLDTA 481 (487)
Q Consensus 412 ~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsI-S~~ng~v~~tf~aEq~keG~~---v~~eeIkaaLl~sa 481 (487)
....|.|+|..++|+|.+|.-+|..+||+|+.|.| ++.+|+++++|.|.. ..|.. -..++|++.|.+++
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEEDVHYRDIINLVEHELAERL 749 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCCCChHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999 567999999999964 33331 12455666665544
No 47
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.51 E-value=0.1 Score=60.87 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=60.8
Q ss_pred cceEEEEEe-cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEeeecCCcc----cCHHHHH
Q 011370 401 AARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQD----VLPKQIK 474 (487)
Q Consensus 401 ~~~VEV~vi-eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~-~ng~v~~tf~aEq~keG~~----v~~eeIk 474 (487)
.+.|.++.. +.....|.|.|..++|+|.+|..+|..+|++|+.|.|.+ .+|+++++|.+.. ..|.. -..+.|+
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLA 797 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHH
Confidence 345666543 224678999999999999999999999999999999887 7999999999863 33322 2355566
Q ss_pred HHHHHhc
Q 011370 475 SVLLDTA 481 (487)
Q Consensus 475 aaLl~sa 481 (487)
+.|...+
T Consensus 798 ~~L~~~l 804 (931)
T PRK05092 798 KAIEDAL 804 (931)
T ss_pred HHHHHHH
Confidence 6776655
No 48
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.47 E-value=0.11 Score=42.09 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=53.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
|++.+.+|||+..+|.++|.++|++|...+.++..+.+...+.+.- .. ....+++++.|...+.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~-p~--~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI-PD--SADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc-CC--CCCHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999988777777753 22 2567888888876553
No 49
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.44 E-value=0.14 Score=41.25 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=50.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN------GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n------g~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
|+|.|+.++|++.+|-+.|.+.|++|...+..+.+ +.+.-.+.+.- .. .....+|++.|...+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~-p~--~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL-PA--GTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec-CC--CCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999998887 55655555543 22 356788887776654
No 50
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.085 Score=43.40 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHh
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDT 480 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~s 480 (487)
.|+|.|+++.||-.+|.+.+-+.||.|+...+++-+...+-+|-+........+.=+-||..|++.
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 489999999999999999999999999999999999998888888654434456778888888764
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.26 E-value=0.26 Score=38.89 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=39.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEee
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQ 461 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-ng~v~~tf~aEq 461 (487)
|+|.+..++|+|.+|+.+|.+.|.+|...++... ++.+...|.++.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev 48 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA 48 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc
Confidence 6788899999999999999999999999998776 467766777765
No 52
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.17 E-value=0.22 Score=37.89 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=36.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEee
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQ 461 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-----ng~v~~tf~aEq 461 (487)
+.|.++.+||.|.+|+++|.+.|++|.+..+... .+.....|+++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~ 51 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET 51 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe
Confidence 3577889999999999999999999998887654 355555666654
No 53
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.15 E-value=0.021 Score=62.14 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=49.7
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHhhccCCC----CCcCChhhHHHHHHHHHHHHHHHHHHH
Q 011370 297 KRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLKELLQRINDL 356 (487)
Q Consensus 297 rr~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~----~sK~dKaSIL~dAI~YIk~Lq~qv~~L 356 (487)
|.++++..++.+||-|=+.||+.|.+|..+.-- -..-.|.-||..||.-|-.|++||.+-
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 456778899999999999999999999877642 122367889999999999999998763
No 54
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.15 E-value=0.67 Score=33.65 Aligned_cols=66 Identities=20% Similarity=0.154 Sum_probs=46.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-g~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
|+|.|..++|.+.+|++.|.+.++++....+...+ +.....|.++... ....+.+.+.|...-|++
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~v~ 67 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD---LEHLARIMRKLRQIPGVI 67 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC---HHHHHHHHHHHhCCCCcE
Confidence 45778899999999999999999999999887765 5444455555322 123455566665555544
No 55
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.93 E-value=0.5 Score=36.47 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-C-CEEEEEEEEe
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-N-GFALDVFRAE 460 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-n-g~v~~tf~aE 460 (487)
++|.|.+..++|+|.+|+..|.+.++++.+...... + +...-.+.++
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 368999999999999999999999999999887655 3 5554445444
No 56
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.53 E-value=0.4 Score=37.78 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=49.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 483 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~ 483 (487)
.|.|.+..++|+|.+|+.+|.+.+++|...+.+.. ++.+.-.|.++. .+.+...++|.+.|.+.-|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v--~~~~~~l~~l~~~L~~i~~V 69 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT--STMNGDIDELLEELREIDGV 69 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc--CchHHHHHHHHHHHhcCCCe
Confidence 57888999999999999999999999999887553 455555666654 22233566777777665554
No 57
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.99 E-value=1.2 Score=34.83 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=45.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 483 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~ 483 (487)
.|.+.+++++|.|.++++.|.+.|++|.+...... .+...-+|+++. ..+++++++|.+ .||
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~------~~~~~~~~~L~~-~G~ 66 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT------MNPRPIIEDLRR-AGY 66 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec------CCHHHHHHHHHH-CCC
Confidence 46778889999999999999999999998765433 356666677654 234578877654 465
No 58
>PRK04435 hypothetical protein; Provisional
Probab=92.78 E-value=0.69 Score=42.85 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=54.2
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 483 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~-~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~ 483 (487)
.|+.+.|.+.+..++|+|.+|+++|.+.+++|...+.+. .++.+.-+|.++.. +.....++|.+.|...=|.
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~~~~~L~~Li~~L~~i~gV 138 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--SMEGDIDELLEKLRNLDGV 138 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--ChHHHHHHHHHHHHcCCCc
Confidence 478899999999999999999999999999999988655 36777777777652 2223456666666554443
No 59
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=92.35 E-value=1.2 Score=35.76 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF 452 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~ 452 (487)
.|+|.|..++|+|.+|+.++.+.+.++...++... +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 47899999999999999999999999999998775 54
No 60
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.16 E-value=1 Score=30.77 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=30.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN 450 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n 450 (487)
|.|.|..++|.+.+|+.+|...++.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788899999999999999999999999876653
No 61
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.00 E-value=1.4 Score=33.59 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=45.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
.|.|.|..++|.|.+++..|.+.++.|.+...... ++...-++.+.. . ...+++.+.|.+.=|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~----~-~~~~~~~~~L~~~~~ 65 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG----V-GDIEELVEELRSLPI 65 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec----c-ccHHHHHHHHhCCCC
Confidence 47788999999999999999999999998887765 344444444432 1 355566666665444
No 62
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.86 E-value=0.95 Score=34.08 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=48.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHHhcCC
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 483 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~ 483 (487)
+.|.+..++|.|.+|++.|.+.+++|.+..+.... +.....|+++. ...++|.+.|...-|+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~------~~~~~l~~~l~~~~~V 65 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS------PVPEEVLEELKALPGI 65 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC------CCCHHHHHHHHcCCCe
Confidence 56788899999999999999999999999887754 67666766631 2366777777766554
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.80 E-value=1 Score=34.14 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=47.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
.|.|.+..++|+|.+|+..|.+.++++.+...... ++.+...|.+... . ...++|...|.+.-|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~l~~~~~v~ 69 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD---D-DVIEQIVKQLNKLVDVL 69 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC---H-HHHHHHHHHHhCCccEE
Confidence 46778889999999999999999999999887764 4566666666531 1 34555666666554443
No 64
>PRK07334 threonine dehydratase; Provisional
Probab=91.80 E-value=1.3 Score=46.89 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=43.3
Q ss_pred CcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEee
Q 011370 411 GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQ 461 (487)
Q Consensus 411 G~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-----ng~v~~tf~aEq 461 (487)
+..+.|+|.+..|+|+|.+|+.+|.+.+++|.++++... ++.+.-.|.++.
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V 379 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET 379 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe
Confidence 456899999999999999999999999999999998764 567666677765
No 65
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.70 E-value=1.6 Score=33.99 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=44.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-C-EEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-G-FALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-g-~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
.+.+.++.+||.|.++++.|.+.|++|......... + .....|.++. .+ ..++++++|.+ +||.
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~----~~-~~~~~~~~L~~-~G~~ 68 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT----QE-DRERAKEILKE-AGYE 68 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC----HH-HHHHHHHHHHH-cCCc
Confidence 467788899999999999999999999988766542 2 2222344431 12 56677777544 5663
No 66
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.21 E-value=1.3 Score=33.45 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=44.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCC
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 483 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~ 483 (487)
|.+.+..++|.|.+|+..|.+.+++|.+...... ++.....|.++. . ...++.+.|.+.-|+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~----~--~~~~~i~~l~~~~~v 65 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ----P--IDEEVIEEIKKIPNI 65 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC----C--CCHHHHHHHHcCCCc
Confidence 5678889999999999999999999998876652 355544555543 1 455666666655443
No 67
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=90.98 E-value=0.22 Score=55.21 Aligned_cols=45 Identities=36% Similarity=0.551 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCC----CCcCChhhHHHHHHHHHHH
Q 011370 304 KNLMAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLKE 348 (487)
Q Consensus 304 ~H~~~ERrRR~kiN~~~~~LRsLVP~----~sK~dKaSIL~dAI~YIk~ 348 (487)
.+.---||-|+|+|..+..|.+|||- ++|.||.|||.-++.|++-
T Consensus 28 tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 28 TKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred ccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 34456678899999999999999995 6899999999999999863
No 68
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.58 E-value=1.5 Score=33.27 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=42.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHHhcCC
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 483 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~ 483 (487)
|.|.-+.+||.|.+++..|.+.|++|.+....... +.....|+++. .+.++++|.+ .||
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--------~~~~~~~L~~-~G~ 62 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--------IEKAIEVLQE-RGV 62 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--------HHHHHHHHHH-CCc
Confidence 45666789999999999999999999877665443 45555555542 6677776544 466
No 69
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.58 E-value=0.22 Score=56.42 Aligned_cols=50 Identities=36% Similarity=0.470 Sum_probs=42.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhccCCC----CCcCChhhHHHHHHHHHHHHH
Q 011370 301 LPAKNLMAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLKELL 350 (487)
Q Consensus 301 ~~~~H~~~ERrRR~kiN~~~~~LRsLVP~----~sK~dKaSIL~dAI~YIk~Lq 350 (487)
+|.+-..+-|-||.|=|+-|++|..+||- .+..|||+|+.-||-|++-=+
T Consensus 46 rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk 99 (768)
T KOG3558|consen 46 RKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRK 99 (768)
T ss_pred HhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHH
Confidence 35555688999999999999999999994 467899999999999987543
No 70
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=89.53 E-value=3.1 Score=32.59 Aligned_cols=61 Identities=26% Similarity=0.468 Sum_probs=44.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
.|.|..+.+||.|.+|+++|.+.|++|.+..+....+. .++++.. . ..+.++++| +..||.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~-~-----~~~~~~~~L-~~~G~~ 63 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV-S-----DPDKAKEAL-KEAGFA 63 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE-C-----CHHHHHHHH-HHCCCE
Confidence 46677889999999999999999999999887766553 5555543 1 256666665 444663
No 71
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=89.45 E-value=0.2 Score=47.55 Aligned_cols=50 Identities=28% Similarity=0.427 Sum_probs=44.3
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCC--CCcCChhhHHHHHHHHHHHHHH
Q 011370 302 PAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIDYLKELLQ 351 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~--~sK~dKaSIL~dAI~YIk~Lq~ 351 (487)
...|++.||+|=..+|+.|..||.++|. +.|..|.--|.-|..||-.|-+
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 3568999999999999999999999995 6788888889999999998864
No 72
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=89.35 E-value=2.4 Score=43.42 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=52.1
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~--~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|++.|.+|||+...|-++|.++|++|...+.++ .++.+.-.+.+.. +......++|+++|....
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLIFNLETLRADFAALA 74 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999 8886555554432 122344778888776554
No 73
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.76 E-value=3.1 Score=33.02 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=42.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEeeecCCcccCHHHHHHHHHHh
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF---NGFALDVFRAEQCREGQDVLPKQIKSVLLDT 480 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~---ng~v~~tf~aEq~keG~~v~~eeIkaaLl~s 480 (487)
+++.-+.+||.|.+++..|.+.|++|++...... .+.-...+++.. +... ..+.|.++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~--e~~~-~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP--MDRS-KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE--ecch-HHHHHHHHHhCc
Confidence 4556678999999999999999999999877664 334444555543 1111 266777777443
No 74
>PRK08577 hypothetical protein; Provisional
Probab=88.70 E-value=3.3 Score=37.44 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=50.2
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011370 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
.+.|.|.+..++|+|.+|+.+|.+.++++.+.+..+. ++.+.-.+.++... .....++|.+.|.+.=|
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~--~~~~l~~l~~~L~~l~~ 125 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSK--SDIDLEELEEELKKLEE 125 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCC--chhhHHHHHHHHHcCCC
Confidence 6889999999999999999999999999998887765 35555556665422 11345677777765444
No 75
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=88.25 E-value=2 Score=33.36 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=48.6
Q ss_pred EEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCCC
Q 011370 417 HMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFHD 485 (487)
Q Consensus 417 ~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~--~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~~ 485 (487)
-+....++|.+.++.+.|.+.|++|.+..+.. .++....+|+++. ..+.++.+.|.+.=|++-
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~------~~~~~~~~~l~~~~~v~~ 67 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE------PVPDEVLEELRALPGILS 67 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC------CCCHHHHHHHHcCCCccE
Confidence 45778899999999999999999998887655 4577777777753 235688888877766653
No 76
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=87.91 E-value=2.9 Score=42.76 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=50.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHH
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLD 479 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~ 479 (487)
.|++.|++++|+...|-..|-+.|++|+.++-+... ++++-.+.+.. .+.....++|+++|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~--~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQL--EGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHH
Confidence 488999999999999999999999999999988753 66665555542 2234678888888877
No 77
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=87.70 E-value=4.9 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=34.8
Q ss_pred EEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEe
Q 011370 417 HMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAE 460 (487)
Q Consensus 417 ~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng-~v~~tf~aE 460 (487)
.+..+++||.|.+|++.+.+.|+++.+..+....+ ..-+.|.++
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id 47 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD 47 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE
Confidence 34456799999999999999999999998877655 444555565
No 78
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=87.61 E-value=3.4 Score=42.33 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=48.2
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|+|.|+++||+...|-+.|-++|++|...+..+- .+.+.-.+.+. ... ....++|++.|...+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~-~p~--~~~~~~L~~~L~~l~ 74 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFH-SEE--GLDEDALRAGFAPIA 74 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEe-cCC--CCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999998743 33333233332 122 356888888876654
No 79
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=86.97 E-value=6 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=36.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEee
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQ 461 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-g~v~~tf~aEq 461 (487)
|.+....++|.|.+|++.+.+.|+++++..+.... +...++|+++.
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 44555678999999999999999999999866653 35567777764
No 80
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=86.95 E-value=2.7 Score=31.62 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=37.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEe
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAE 460 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-g~v~~tf~aE 460 (487)
|.|.+..+||.|.++.++|.+.|++|....+.... +..+..|.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35677899999999999999999999888877665 6777777665
No 81
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=86.47 E-value=1.9 Score=41.77 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=52.8
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|++.+++|||+...|-++|.++|.++..++.+..+|.+--++.+. +......+|+..|-...
T Consensus 8 ~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~~~~~~le~~L~~l~ 72 (190)
T PRK11589 8 YLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSWNAITLIESTLPLKG 72 (190)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CChhHHHHHHHHHHhhh
Confidence 466889999999999999999999999999999999999887777663 23346677777765443
No 82
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=86.35 E-value=3 Score=42.90 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS--CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS--~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
+.|++.|++++|+...|-+.|-+.|++|+.++-. +..+.++-.+.+. +.....+..++|+++|...+
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~-~~~~~~~~~~~l~~~l~~l~ 78 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH-AQSAEAASVDTFRQEFQPVA 78 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE-cCCCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999999999999999985 3333333332232 11122567888888886643
No 83
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.33 E-value=3 Score=48.62 Aligned_cols=58 Identities=29% Similarity=0.438 Sum_probs=48.3
Q ss_pred ceEEEEEecCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEe
Q 011370 402 ARVEVRIREGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS-CFNGFALDVFRAE 460 (487)
Q Consensus 402 ~~VEV~vieG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS-~~ng~v~~tf~aE 460 (487)
+.+.++... ....|.|.|+.+|.++..|..++...|++|+.|+|. +.+|+++++|.+.
T Consensus 674 v~~~~r~~~-~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~ 732 (867)
T COG2844 674 VLISVRPHS-GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVL 732 (867)
T ss_pred eeeeecccC-CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEe
Confidence 334444443 356789999999999999999999999999999976 5688999999986
No 84
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=85.32 E-value=0.91 Score=49.06 Aligned_cols=43 Identities=40% Similarity=0.532 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCC----CCcCChhhHHHHHHHHHHHH
Q 011370 307 MAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLKEL 349 (487)
Q Consensus 307 ~~ERrRR~kiN~~~~~LRsLVP~----~sK~dKaSIL~dAI~YIk~L 349 (487)
-+-|.||++-|-.|.+|..++|- .+..||++|+.-|-.|||.-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 57799999999999999999995 36789999999999999853
No 85
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=84.41 E-value=0.95 Score=34.97 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=45.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
|-+.+..++|+|.+|+..|.+.++++........++..+-.|.++.. ..+++.+.|.+.-|++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~------~l~~li~~l~~~~~V~ 64 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE------VSEELLEALRAIPGTI 64 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC------CCHHHHHHHHcCCCeE
Confidence 34577889999999999999999999777655545676666666531 5556666666555544
No 86
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=83.43 E-value=1.4 Score=44.46 Aligned_cols=53 Identities=32% Similarity=0.369 Sum_probs=45.1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhhccCCC---CCcCChhhHHHHHHHHHHHHHHH
Q 011370 300 GLPAKNLMAERRRRKKLNDRLYMLRSVVPK---ISKMDRASILGDAIDYLKELLQR 352 (487)
Q Consensus 300 ~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~---~sK~dKaSIL~dAI~YIk~Lq~q 352 (487)
.++.+=+..||+|=-.+|+.|..||.++|. ..|+.|...|.-|-+||..|++-
T Consensus 71 ~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 71 LRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 344555788998889999999999999994 57889999999999999988753
No 87
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=81.06 E-value=16 Score=42.59 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=48.2
Q ss_pred eEEEEEecC----cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEee
Q 011370 403 RVEVRIREG----RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQ 461 (487)
Q Consensus 403 ~VEV~vieG----~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq 461 (487)
-|+|..... ..+.|.|.+..++|+|.+|..+|.+.+++|.++++... ++.+.-.|.+++
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV 716 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI 716 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE
Confidence 477777421 34689999999999999999999999999999998765 477767777775
No 88
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=80.01 E-value=17 Score=41.90 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=55.4
Q ss_pred eEEEEEecC----cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEeeecCCcccCHHHHHHHH
Q 011370 403 RVEVRIREG----RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVL 477 (487)
Q Consensus 403 ~VEV~vieG----~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-g~v~~tf~aEq~keG~~v~~eeIkaaL 477 (487)
-|+|+...+ ..+.|.|.+..++|+|.+|+.+|-+.+++|.++++.... +.+.-.|.+++ -..++|...+
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~ 685 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIM 685 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHH
Confidence 477777422 256899999999999999999999999999999987765 56666677775 2344555444
Q ss_pred HHhcCCCC
Q 011370 478 LDTAGFHD 485 (487)
Q Consensus 478 l~saG~~~ 485 (487)
...-+..|
T Consensus 686 ~~Lr~i~~ 693 (702)
T PRK11092 686 RKIRVMPD 693 (702)
T ss_pred HHHhCCCC
Confidence 44333333
No 89
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.72 E-value=13 Score=32.00 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=36.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEe
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF-ALDVFRAE 460 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~-v~~tf~aE 460 (487)
..|-+..++++|.|.+++..+...|+++.+..+-..-+. --+.|.++
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD 62 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN 62 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE
Confidence 345555678899999999999999999999998776433 34566666
No 90
>PRK06382 threonine dehydratase; Provisional
Probab=77.85 E-value=11 Score=40.21 Aligned_cols=71 Identities=25% Similarity=0.293 Sum_probs=51.6
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE-----eeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS-----CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS-----~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
.++.+.+.|.-+.+||.|.+|++.|.+.+.+|++.... .-.+...-+|+++... .-..++|++.| +..||+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~---~~~~~~v~~~L-~~~Gy~ 402 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG---QDHLDRILNAL-REMGYK 402 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC---HHHHHHHHHHH-HHCCCC
Confidence 35678888888999999999999999999999988764 2245666777777521 13345677664 446664
No 91
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=77.10 E-value=3.4 Score=42.25 Aligned_cols=53 Identities=30% Similarity=0.299 Sum_probs=44.9
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCC---CCcCChhhHHHHHHHHHHHHHHHHH
Q 011370 302 PAKNLMAERRRRKKLNDRLYMLRSVVPK---ISKMDRASILGDAIDYLKELLQRIN 354 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~---~sK~dKaSIL~dAI~YIk~Lq~qv~ 354 (487)
+..-+..||+|=..||..|..||.+||. ..|..|-..|..|-.||--|-..++
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 3455689999999999999999999996 3677888899999999988876553
No 92
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=76.98 E-value=24 Score=40.49 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=48.2
Q ss_pred eEEEEEecC----cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEee
Q 011370 403 RVEVRIREG----RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQ 461 (487)
Q Consensus 403 ~VEV~vieG----~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-ng~v~~tf~aEq 461 (487)
-|.|..... ..+.|.|.+..++|+|.+|+.+|-+.+.+|.++++... ++.+.-.|.+++
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV 659 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI 659 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE
Confidence 467777432 35789999999999999999999999999999999877 466666677775
No 93
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=73.89 E-value=16 Score=42.22 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=55.4
Q ss_pred EEE-EcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 416 IHM-FCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 416 I~I-~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
++| .|++++|+|+++.-+|--.++.|.+|++.+ +|..+..|.+.. .-|....+..+++.+...+
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~ 613 (693)
T PRK00227 549 FTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDFDPQEFLQAYKSGV 613 (693)
T ss_pred EEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCCChHHHHHHHHHhh
Confidence 444 459999999999999999999999999999 999999999864 6788888999998887654
No 94
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=73.87 E-value=18 Score=29.39 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=35.2
Q ss_pred EEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEee
Q 011370 418 MFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF-ALDVFRAEQ 461 (487)
Q Consensus 418 I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~-v~~tf~aEq 461 (487)
+..+++||.|.+++..+...|+++.+..+-...+. .-+.|.++.
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 44467899999999999999999999998877654 445666663
No 95
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.35 E-value=24 Score=27.85 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=41.1
Q ss_pred EEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 417 HMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 417 ~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-g~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
.+.-+.+||-|.+++++|.+ +.+|+.......+ +...-.+.++... .-..++|.+.|.+ .||.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~---~~~~~~i~~~L~~-~G~~ 65 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD---REDLAELKERLEA-LGYP 65 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC---HHHHHHHHHHHHH-cCCC
Confidence 45567899999999999999 9999988876643 1222223344311 2345666666654 6764
No 96
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=67.37 E-value=8.8 Score=33.62 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCCC
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFHD 485 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~~ 485 (487)
+.|+|.-.+|+|+...|..+|-++|+++...+=+...+++--.+.+...+ ......+++..|...+--+|
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~--~~~d~~~lr~~l~~~~~~lg 73 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK--EVVDFAALRDELAAEGKKLG 73 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh--HhccHHHHHHHHHHHHHhcC
Confidence 45778888999999999999999999999999999999887777775422 24556666666655544333
No 97
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=66.54 E-value=35 Score=32.36 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=47.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHHh
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDT 480 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~s 480 (487)
.|.|.-..+||.|.+|..+|...|+++.+..+...+ +...-+|++.. .+...++|..-|.+.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~----d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG----DDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC----CHHHHHHHHHHHhcC
Confidence 477788899999999999999999999999888765 56666666642 245567777666543
No 98
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=66.10 E-value=32 Score=35.96 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=50.4
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 483 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-----ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~ 483 (487)
+++.+.+.|.-+.+||.|.++++.+.+.+.+|++...... .+.+.-+++++... .-..++|.+.|.+ .||
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~---~~~~~~i~~~L~~-~G~ 376 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG---KEHLDEILKILRD-MGY 376 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC---HHHHHHHHHHHHH-cCC
Confidence 4677888999999999999999999999999998876632 24555566666421 2344566666644 455
No 99
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=65.62 E-value=26 Score=36.37 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=48.6
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.+.+.|+.++|+...|-..|-+.|..|++++-... .|+++- +++=..++.....++|++.+-..+
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFm--R~~f~~~~~~~~~~~l~~~f~~~a 75 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFM--RVEFEGEGGPLDREALRAAFAPLA 75 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEE--EEEEecCCCcccHHHHHHHHHHHH
Confidence 4678999999999999999999999999999886632 233332 233222344477888888876644
No 100
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=65.38 E-value=30 Score=43.36 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=51.7
Q ss_pred cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-----CEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 412 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-----GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 412 ~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-----g~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
..+.++|....++..|++||-+|+++||.|+...-..+. ...+|-|.+.. ..+......+++..|.+++
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~-~~~~~~~~~~~~~~~~~a~ 561 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY-PDGDALDLDDIRERFEEAF 561 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec-CCCccccHHHHHHHHHHHH
Confidence 468999999999999999999999999999988644332 25777788763 4444456666666665544
No 101
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=63.99 E-value=37 Score=33.01 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=46.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC----EEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG----FALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng----~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
+.|++.-.++||++.+|-++|-+.|++|...+.-+... .-++..+++. .--.....++|+..|.+.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v-~lP~~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITA-HSPASQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEE-EcCCCCCHHHHHHHHHHHH
Confidence 56777777999999999999999999999988877753 2233333332 1111355777887776543
No 102
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=63.96 E-value=44 Score=28.13 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=46.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.|.|.-..+||.|.+|+..+.-.|++|.+.++... .+...-++.+. .+...++|..-|.+-.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-----~~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-----SERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-----CCchHHHHHHHHhcCc
Confidence 46777789999999999999999999999998874 44444444442 3567777777665543
No 103
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=63.87 E-value=41 Score=32.02 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=45.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHH
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLD 479 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~ 479 (487)
.|.|.-..+||.|.+|...|...|++|.+..+.... +...-+|++. +.+...++|..-|.+
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~----~~~~~i~qi~kQl~K 66 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS----GDEQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE----CCHHHHHHHHHHHhc
Confidence 477778899999999999999999999998887654 5666667664 234555666655543
No 104
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=62.66 E-value=36 Score=28.68 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=44.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHH
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLD 479 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~ 479 (487)
..|.+....+||+|.+|..++.-.|++|.+.++...+ +...-++.+. |.+...++|..-|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~----~~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV----CTENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE----CCHHHHHHHHHHHhC
Confidence 3577788899999999999999999999998888655 3444444442 334555666655544
No 105
>PRK08526 threonine dehydratase; Provisional
Probab=62.09 E-value=59 Score=34.86 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=51.3
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-----EEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF-----ALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~-----v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
+++.+.+.+.-+.+||-|.+++..+-+.+.+|+.......... +.-.+.+|.. ..-..++|.+.|. ..||.
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~---~~~~~~~~~~~l~-~~g~~ 398 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK---GKEHQEEIRKILT-EKGFN 398 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC---CHHHHHHHHHHHH-HCCCC
Confidence 5788999999999999999999999999999999988665433 3333445531 1234556666664 36664
No 106
>PRK08198 threonine dehydratase; Provisional
Probab=61.96 E-value=48 Score=35.02 Aligned_cols=71 Identities=25% Similarity=0.384 Sum_probs=50.0
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-----ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
.++.+.+.|.-+.+||.|.++++.|-+.|.+|........ .+.+.-.+.++. + +.+ ..++|...|.+ .||.
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~-~-~~~-~~~~l~~~L~~-~G~~ 399 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET-R-GPE-HIEEILDALRD-AGYE 399 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe-C-CHH-HHHHHHHHHHH-CCCe
Confidence 4567788888899999999999999999999998887653 345555555654 1 112 45566666543 5553
No 107
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=61.86 E-value=51 Score=26.30 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 422 RRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 422 krpGLL~~ImeALEsLgLdVvsAsIS~--~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+||.|.+|+..+.-.|++|.+.++.. .++..-.++.+. |.+...++|..-|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~----~~~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS----GDDREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE----S-CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe----eCchhHHHHHHHHhccC
Confidence 368999999999999999999999998 555655555553 33456777777766543
No 108
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=57.79 E-value=52 Score=31.11 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=52.9
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEE-EEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHH
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAV-ISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLD 479 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAs-IS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~ 479 (487)
+++.+.+.+.-.+|-|.|+++++++-..++.|.+.+ ....+|++--++.+... +-+-..+.|..+|..
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s--sm~~~V~~ii~kl~k 137 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS--SMEKDVDKIIEKLRK 137 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch--hhhhhHHHHHHHHhc
Confidence 456778888888999999999999999999999876 44788888777777542 334556677766654
No 109
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.68 E-value=76 Score=28.50 Aligned_cols=45 Identities=4% Similarity=-0.110 Sum_probs=34.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEe
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF-ALDVFRAE 460 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~-v~~tf~aE 460 (487)
|-+..++++|.|.++|..+...|+.+.+..+-...+. --+.|.++
T Consensus 44 lifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId 89 (115)
T cd04930 44 LLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR 89 (115)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE
Confidence 3344467899999999999999999999998776333 33555565
No 110
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.60 E-value=1.1e+02 Score=25.40 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=39.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-g~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
.+.+.-+.+||-|.+++++|- +.+|......... +...-.+.++. +++ .-..+++.++| +..||.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-~~~-~~~~~~i~~~L-~~~G~~ 68 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-ANG-AEELAELLEDL-KSAGYE 68 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-CCc-HHHHHHHHHHH-HHCCCC
Confidence 467777899999999999998 6777765555432 23323333443 111 23456666665 446764
No 111
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.55 E-value=75 Score=26.23 Aligned_cols=55 Identities=9% Similarity=0.144 Sum_probs=38.6
Q ss_pred EcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEeeecCCcccCHHHHHHHHH
Q 011370 419 FCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAEQCREGQDVLPKQIKSVLL 478 (487)
Q Consensus 419 ~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng-~v~~tf~aEq~keG~~v~~eeIkaaLl 478 (487)
..++++|.|.+++..++..|+.+.+..+-...+ ..-+.|.++ ++.. .+.|+++|.
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id-~e~~----~~~i~~~l~ 61 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD-CECD----QRRLDELVQ 61 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC----HHHHHHHHH
Confidence 336789999999999999999999998876533 344566665 3322 235555553
No 112
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=53.26 E-value=50 Score=24.06 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=26.3
Q ss_pred EEEEcC---CCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 011370 416 IHMFCA---RRPGLLLSTMRALDSLGLDIQQAVISC 448 (487)
Q Consensus 416 I~I~C~---krpGLL~~ImeALEsLgLdVvsAsIS~ 448 (487)
|+|.+. ..++.+.+++++|.+.++.|.....+.
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 556544 568899999999999999998776644
No 113
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=52.84 E-value=64 Score=30.09 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEE
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRA 459 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~a 459 (487)
.|+++.+.+||.|..+..+|.+.|+++...+|.-.++|=+.-+.+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV 49 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVV 49 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEc
Confidence 478899999999999999999999999998888777765444333
No 114
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=52.19 E-value=70 Score=30.88 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=46.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~--~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.|.+.-..+||+|.+|...|...|++|.+.++.. ..+..--++.+. ++... .++|+..|.+-+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~---~~~~~-ieqL~kQL~KLi 68 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP---GDDRT-IEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE---CCHHH-HHHHHHHHHHHh
Confidence 4777888999999999999999999999999876 444443444432 22223 788888776654
No 115
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=50.28 E-value=58 Score=28.20 Aligned_cols=62 Identities=11% Similarity=0.016 Sum_probs=44.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE--EEEEEEEeeecCCcccCHHHHHHHHHH
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF--ALDVFRAEQCREGQDVLPKQIKSVLLD 479 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~--v~~tf~aEq~keG~~v~~eeIkaaLl~ 479 (487)
.|.+.-..+||+|.+|-.++.-.|..|.+.+++..... ..-+|.++ .|.+...++|..-|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~---~~d~~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD---IQDDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe---CCCHHHHHHHHHHHhC
Confidence 46777789999999999999999999988888766554 33444443 1445566677666654
No 116
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=44.93 E-value=8.3 Score=44.38 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=53.1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhhccCCC-----CCcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011370 300 GLPAKNLMAERRRRKKLNDRLYMLRSVVPK-----ISKMDRASILGDAIDYLKELLQRINDLHNELEST 363 (487)
Q Consensus 300 ~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~-----~sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl 363 (487)
.+...|+-+|.+||..+.-.|..|.+++-+ ..|+.++.-+...+.||..++++...+.+|-..+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~l 718 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSL 718 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhh
Confidence 567889999999999999999999999876 3577777789999999999988777776664443
No 117
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=44.68 E-value=77 Score=23.88 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.8
Q ss_pred EEEEcC---CCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 011370 416 IHMFCA---RRPGLLLSTMRALDSLGLDIQQAVISC 448 (487)
Q Consensus 416 I~I~C~---krpGLL~~ImeALEsLgLdVvsAsIS~ 448 (487)
|.|.+. ..++++.+|+++|.+.++.|.-.+.+.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 455553 468999999999999999997765544
No 118
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=41.39 E-value=1.1e+02 Score=24.79 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=32.3
Q ss_pred ceEEEEEecCcEEEEEEEcCCC------CCHHHHHHHHHHhCCCeEEEEEEEe
Q 011370 402 ARVEVRIREGRAVNIHMFCARR------PGLLLSTMRALDSLGLDIQQAVISC 448 (487)
Q Consensus 402 ~~VEV~vieG~~V~I~I~C~kr------pGLL~~ImeALEsLgLdVvsAsIS~ 448 (487)
+.|.|+.. +..+.|+|.+... ..-+..+-++|...|+.|.+.++..
T Consensus 27 v~v~l~~~-~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~ 78 (85)
T PF02120_consen 27 VEVKLRLQ-GGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQ 78 (85)
T ss_dssp EEEEEEEE-TTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEES
T ss_pred EEEEEEEe-CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEE
Confidence 46666665 4589999999764 2356778889999999999877654
No 119
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=40.37 E-value=38 Score=39.16 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=40.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEe
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAE 460 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aE 460 (487)
..++|....|+|+|..|+.+|. ||.-|.+++.+..++++|.+.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 4588999999999999999999 999999999999999999885
No 120
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=35.20 E-value=28 Score=33.47 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC--CcCChhhHHHHHHHHHHHH
Q 011370 308 AERRRRKKLNDRLYMLRSVVPKI--SKMDRASILGDAIDYLKEL 349 (487)
Q Consensus 308 ~ERrRR~kiN~~~~~LRsLVP~~--sK~dKaSIL~dAI~YIk~L 349 (487)
.||.|.+++++.+.-|+.|+|.. .++.+---|..+-.||+.|
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 68999999999999999999973 3333322255455555444
No 121
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=35.00 E-value=2.9e+02 Score=32.43 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=45.7
Q ss_pred ceEEEEEecC----cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEee
Q 011370 402 ARVEVRIREG----RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQ 461 (487)
Q Consensus 402 ~~VEV~vieG----~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-ng~v~~tf~aEq 461 (487)
--|+|..... ..+.|.|....++|+|.+|+++|-+.+..|.++++.+. ++.+.-.|.++.
T Consensus 612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v 676 (701)
T COG0317 612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV 676 (701)
T ss_pred eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE
Confidence 3466766432 45778888889999999999999999999999999886 334444455554
No 122
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.82 E-value=1.5e+02 Score=22.47 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 011370 422 RRPGLLLSTMRALDSLGLDIQQAVISC 448 (487)
Q Consensus 422 krpGLL~~ImeALEsLgLdVvsAsIS~ 448 (487)
.+++.+.+++++|.+.+++|.-...+.
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 468999999999999999997665544
No 123
>PRK11899 prephenate dehydratase; Provisional
Probab=34.74 E-value=2.3e+02 Score=29.17 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=37.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEee
Q 011370 416 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQ 461 (487)
Q Consensus 416 I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n-g~v~~tf~aEq 461 (487)
|-+..+++||.|.++|.++...|++++...+=... ...-|.|.++.
T Consensus 197 l~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 197 FVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 33444689999999999999999999999988774 44667777764
No 124
>PRK08639 threonine dehydratase; Validated
Probab=34.40 E-value=1.9e+02 Score=31.14 Aligned_cols=71 Identities=15% Similarity=0.026 Sum_probs=46.5
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEE--EEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFAL--DVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~--~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
+++.+.+++.-+.|||-|.++++.+-..+-+|+..+.-...+.-. -.+.+|. ++ .-..++|++.|.+ +||.
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~-~~--~~h~~~i~~~L~~-~Gy~ 405 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIEL-KD--AEDYDGLIERMEA-FGPS 405 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEe-CC--HHHHHHHHHHHHH-CCCc
Confidence 578899999999999999999996666666888876653222211 1223332 21 2355777777755 6763
No 125
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=34.18 E-value=1.7e+02 Score=20.63 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEe
Q 011370 423 RPGLLLSTMRALDSLGLDIQQAVISC 448 (487)
Q Consensus 423 rpGLL~~ImeALEsLgLdVvsAsIS~ 448 (487)
.++.+.+++++|.+.+++|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67999999999999999997765543
No 126
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=33.84 E-value=66 Score=24.44 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEE
Q 011370 422 RRPGLLLSTMRALDSLGLDIQQAVI 446 (487)
Q Consensus 422 krpGLL~~ImeALEsLgLdVvsAsI 446 (487)
..+|...+|+++|++.+++|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4689999999999999999998854
No 127
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=31.90 E-value=2.7e+02 Score=24.39 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=44.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHH
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLL 478 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl 478 (487)
+.+.|....+|+.|.+|+.+.+..|+.|-..+.+.. .+.+---|.+.- +..++-|..-|.
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-----~R~~~lL~~QLe 65 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-----DRSVDLLTSQLE 65 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-----CCChHHHHHHHH
Confidence 456677778999999999999999999999998887 555555555532 355555555443
No 128
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=30.61 E-value=2.5e+02 Score=21.65 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEE
Q 011370 422 RRPGLLLSTMRALDSLGLDIQQAV 445 (487)
Q Consensus 422 krpGLL~~ImeALEsLgLdVvsAs 445 (487)
..+|++.+++++|.+.+++|.+..
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEE
Confidence 579999999999999999997433
No 129
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=29.85 E-value=51 Score=23.87 Aligned_cols=18 Identities=44% Similarity=0.672 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 011370 308 AERRRRKKLNDRLYMLRS 325 (487)
Q Consensus 308 ~ERrRR~kiN~~~~~LRs 325 (487)
.=|+||+++..++..||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 347889999999999985
No 130
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.01 E-value=2.5e+02 Score=21.02 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=25.2
Q ss_pred EEEEcC---CCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 011370 416 IHMFCA---RRPGLLLSTMRALDSLGLDIQQAVISC 448 (487)
Q Consensus 416 I~I~C~---krpGLL~~ImeALEsLgLdVvsAsIS~ 448 (487)
|.|.+. +.++++.+++.+|.+.+++|.-.+.+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 444443 468999999999999999997665443
No 131
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=28.88 E-value=2.8e+02 Score=29.75 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=47.7
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-C-CEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-N-GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-n-g~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
+++.+.+++.-+.|||-|.++++.+-..+.+|.....-.. + +...-.+.+|... .-..++|...|.+ .||.
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~---~~h~~~i~~~L~~-~Gy~ 394 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND---KEDFAGLLERMAA-ADIH 394 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC---HHHHHHHHHHHHH-CCCC
Confidence 5788899999999999999999977777779997776532 1 2232334455321 2345667776654 5764
No 132
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=28.39 E-value=2.9e+02 Score=24.51 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=42.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHH
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLD 479 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~ 479 (487)
..|.+....+||+|.+|.-.+--.|..|.+.++.....--+.-+.+... + +-..++|..-|.+
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~--~~~i~Qi~kQL~K 71 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D--DQRLEQMISQIEK 71 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C--chHHHHHHHHHhC
Confidence 4577888899999999999999999988888777665433333333232 2 3455666555543
No 133
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.59 E-value=2.6e+02 Score=20.82 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=35.0
Q ss_pred EEEEcC---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011370 416 IHMFCA---RRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 416 I~I~C~---krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
|.|.+. ..++.+.+++++|.+.+++|.-...+..+.. -.|.+.. -..++..+.|++.+
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~--isf~i~~------~~~~~~~~~Lh~~~ 64 (66)
T cd04924 4 VAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYN--ISFVVAE------DDGWAAVKAVHDEF 64 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccce--EEEEEeH------HHHHHHHHHHHHHh
Confidence 444443 4689999999999999999966654432211 2233332 12345566666554
No 134
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=26.76 E-value=3.6e+02 Score=27.27 Aligned_cols=68 Identities=9% Similarity=0.051 Sum_probs=44.8
Q ss_pred cEEEEEEEcCCCCC--HHHHHHHHHHhCCCeEEEEEEEeeC--CEEE--EEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011370 412 RAVNIHMFCARRPG--LLLSTMRALDSLGLDIQQAVISCFN--GFAL--DVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 412 ~~V~I~I~C~krpG--LL~~ImeALEsLgLdVvsAsIS~~n--g~v~--~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
..+.++|.|.+... +...+++.|++.++.+.+.++.... +.+. ..+.+.. -.+...++|.+.|...-|
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~---~~~~~le~iv~~L~~~pg 214 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHA---DYRKTRELIISRIGDNDN 214 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecC---CchhhHHHHHHHHhCCCC
Confidence 35678899988654 5788889999999999999997653 2222 2232321 234566677666655443
No 135
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=25.94 E-value=26 Score=40.58 Aligned_cols=65 Identities=23% Similarity=0.257 Sum_probs=52.5
Q ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHhhccCCC-----CCcCChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011370 295 KGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPK-----ISKMDRASILGDAIDYLKELLQRINDLHNELES 362 (487)
Q Consensus 295 k~rr~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~-----~sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~es 362 (487)
+.......+.|+.++||||-.+-++|..|..|.|. ..+..+++||. +.|+.+++.-+.+.++.+.
T Consensus 781 ep~n~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 781 EPFNGMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred ccccceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 44445567889999999999999999999999985 35678899999 7888888888887776543
No 136
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=25.33 E-value=59 Score=30.98 Aligned_cols=27 Identities=30% Similarity=0.199 Sum_probs=18.0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhhcc
Q 011370 300 GLPAKNLMAERRRRKKLNDRLYMLRSV 326 (487)
Q Consensus 300 ~~~~~H~~~ERrRR~kiN~~~~~LRsL 326 (487)
..+...+..||+||.---.-|.-||..
T Consensus 10 kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 10 KERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667789999995555556666654
No 137
>PRK13702 replication protein; Provisional
Probab=25.10 E-value=2.2e+02 Score=24.87 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=20.7
Q ss_pred ccccHHHHHHH--HHHHHHHHHhhccCCC
Q 011370 303 AKNLMAERRRR--KKLNDRLYMLRSVVPK 329 (487)
Q Consensus 303 ~~H~~~ERrRR--~kiN~~~~~LRsLVP~ 329 (487)
.....+||+|+ .+..+-..+|.-.||+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n 50 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQN 50 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecH
Confidence 45678999995 5666667788888986
No 138
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.02 E-value=2.6e+02 Score=21.77 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEE
Q 011370 422 RRPGLLLSTMRALDSLGLDIQQAVISCFNGFA 453 (487)
Q Consensus 422 krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v 453 (487)
+.+|++.+++++|.+.+++|.-...++.+-.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si 43 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNI 43 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceE
Confidence 45789999999999999999777665554444
No 139
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=24.87 E-value=1.2e+02 Score=33.53 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN 450 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n 450 (487)
.++|+|.+|-|+..+|+..|-..++++....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999987663
No 140
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=22.28 E-value=4.8e+02 Score=29.04 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=44.2
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEE-EEeeecCCcccCHHHHHHHHHHhcCCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVF-RAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf-~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
+++.+.+.+.-+.|||-|.+++++|-. .+|+..+.-..+...-+++ .++. + ..-..++|.+.|.+ .||.
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~-~--~~~~~~~l~~~L~~-~Gy~ 391 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQL-S--NPQERQEILARLND-GGYS 391 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEe-C--CHHHHHHHHHHHHH-cCCC
Confidence 578899999999999999999999987 4777666654333222332 2332 1 12344556665544 5664
No 141
>PRK12483 threonine dehydratase; Reviewed
Probab=22.07 E-value=5.3e+02 Score=29.01 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=45.0
Q ss_pred cCcEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEE-EEEEeeecCCcccCH-HHHHHHHHHhcCCC
Q 011370 410 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALD-VFRAEQCREGQDVLP-KQIKSVLLDTAGFH 484 (487)
Q Consensus 410 eG~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~-tf~aEq~keG~~v~~-eeIkaaLl~saG~~ 484 (487)
+++.+.+.|.-+.+||-|.++++.|-+. +|+.......+..-.. .+.+|. + + .-.. ++|.+.|.+ .||+
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-~-~-~~~~~~~i~~~l~~-~g~~ 412 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT-H-P-RHDPRAQLLASLRA-QGFP 412 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe-C-C-hhhhHHHHHHHHHH-CCCC
Confidence 5778899999999999999999999877 8887777654332222 233443 1 1 1222 566666654 4554
No 142
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.07 E-value=1.1e+02 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011370 339 LGDAIDYLKELLQRINDLHNELESTP 364 (487)
Q Consensus 339 L~dAI~YIk~Lq~qv~~Le~e~esl~ 364 (487)
+..||+-|.-||-+|++|+.+..++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 78899999999999999999877654
No 143
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=22.01 E-value=2e+02 Score=29.40 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhc
Q 011370 346 LKELLQRINDLHNELES 362 (487)
Q Consensus 346 Ik~Lq~qv~~Le~e~es 362 (487)
||.+++||++|+.++..
T Consensus 57 L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 68899999999999744
No 144
>PRK11020 hypothetical protein; Provisional
Probab=21.90 E-value=1.4e+02 Score=27.43 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011370 309 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNEL 360 (487)
Q Consensus 309 ERrRR~kiN~~~~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~ 360 (487)
++.-=.+||+++..+|.=++.....+.+.|+..--+-|..|..+|+.|+...
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678999999998888877777778888888888888888888776654
No 145
>PLN02705 beta-amylase
Probab=21.16 E-value=1e+02 Score=35.47 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=15.6
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhc
Q 011370 301 LPAKNLMAERRRRKKLNDRLYMLRS 325 (487)
Q Consensus 301 ~~~~H~~~ERrRR~kiN~~~~~LRs 325 (487)
.+.....+||+||.--..-|.-||.
T Consensus 84 e~e~~~~rer~rrai~~ki~aglr~ 108 (681)
T PLN02705 84 EKERTKLRERHRRAITSRMLAGLRQ 108 (681)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999888544444444444
No 146
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.15 E-value=2.7e+02 Score=22.16 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcCChhhHHHHHHHHHHHHHHHHHHHH
Q 011370 310 RRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLH 357 (487)
Q Consensus 310 RrRR~kiN~~~~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~qv~~Le 357 (487)
|.-|=.+...+..+..++- ..+ .++|.+||+++-..++.+.
T Consensus 17 R~~RHD~~NhLqvI~gllq-lg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQ-LGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-CCC------HHHHHHHHHHHHHHHHHHH
Confidence 6667788888899988884 233 6789999999999988873
No 147
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=21.15 E-value=1.2e+02 Score=33.42 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=44.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCCC
Q 011370 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFHD 485 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~~ 485 (487)
.|+|+|..|-|+.-+++..|-..++++....|-..+..-++. .+=.-...++|.+.|...-|..+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~~IYln~------p~l~~~~fs~L~aei~~I~GV~~ 66 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNF------PELEFESFSSLMAEIRRIPGVTD 66 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCCeEEEec------cccCHHHHHHHHHHHhcCCCccc
Confidence 489999999999999999999999999988884333222221 11112345666777766666554
No 148
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=20.97 E-value=3.7e+02 Score=20.16 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEE
Q 011370 421 ARRPGLLLSTMRALDSLGLDIQQAVI 446 (487)
Q Consensus 421 ~krpGLL~~ImeALEsLgLdVvsAsI 446 (487)
...+|.+.+++++|.+.|+.|.-...
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 46789999999999999999975543
No 149
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=20.78 E-value=3e+02 Score=21.72 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 011370 423 RPGLLLSTMRALDSLGLDIQQAVISCFN 450 (487)
Q Consensus 423 rpGLL~~ImeALEsLgLdVvsAsIS~~n 450 (487)
++|++.+++++|.+.+++|...+.+..+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 6789999999999999999777766543
No 150
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=20.57 E-value=1.5e+02 Score=32.01 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCC
Q 011370 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 483 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~ 483 (487)
..|-|.-..+||.+.+|..+|.+.+++|..-.+...++..+.+|.+.. ..++++.+.|...-++
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~------~~~~~~~~~i~~i~~v 402 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA------DYAEEALDALKAIPGT 402 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC------CCcHHHHHHHHcCCCe
Confidence 455666667999999999999999999998888888888887775532 4466777777765444
Done!