Query 011371
Match_columns 487
No_of_seqs 256 out of 2085
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 00:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3.6E-56 7.7E-61 438.7 54.2 435 37-476 13-452 (455)
2 PRK10189 MATE family multidrug 100.0 4.3E-52 9.3E-57 413.6 54.4 432 38-473 26-468 (478)
3 PRK00187 multidrug efflux prot 100.0 8.5E-51 1.8E-55 404.5 56.0 425 38-466 7-443 (464)
4 PRK01766 multidrug efflux prot 100.0 8.9E-49 1.9E-53 391.5 55.6 434 34-471 5-446 (456)
5 PRK10367 DNA-damage-inducible 100.0 1.3E-48 2.8E-53 385.1 54.0 422 38-471 6-434 (441)
6 PRK09575 vmrA multidrug efflux 100.0 8.1E-49 1.8E-53 389.8 52.7 425 38-470 9-438 (453)
7 KOG1347 Uncharacterized membra 100.0 1.3E-38 2.8E-43 311.0 35.2 451 34-486 21-471 (473)
8 TIGR01695 mviN integral membra 100.0 1.9E-36 4.1E-41 307.3 52.1 413 43-467 2-428 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 5.3E-36 1.1E-40 303.1 47.9 414 44-467 2-434 (488)
10 TIGR00797 matE putative efflux 100.0 1E-35 2.3E-40 286.8 43.1 337 49-388 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 7.1E-34 1.5E-38 280.7 46.1 404 43-466 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 7.7E-29 1.7E-33 244.9 50.7 386 71-467 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 4.1E-27 8.8E-32 228.2 50.8 420 40-467 6-437 (518)
14 PRK10459 colanic acid exporter 100.0 1.4E-27 3E-32 241.4 47.4 398 40-466 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 2.2E-25 4.7E-30 224.9 41.7 391 39-451 4-396 (480)
16 COG0534 NorM Na+-driven multid 99.9 5.7E-21 1.2E-25 188.8 27.6 208 257-468 13-222 (455)
17 PRK10367 DNA-damage-inducible 99.9 1.2E-20 2.5E-25 186.6 28.3 206 258-466 6-211 (441)
18 PRK10189 MATE family multidrug 99.9 2.5E-20 5.3E-25 186.1 28.1 204 258-465 26-235 (478)
19 PRK00187 multidrug efflux prot 99.9 2.2E-20 4.8E-25 186.4 27.7 205 257-466 6-214 (464)
20 PRK09575 vmrA multidrug efflux 99.9 3.9E-20 8.4E-25 184.3 26.9 206 258-467 9-215 (453)
21 PRK01766 multidrug efflux prot 99.9 6E-20 1.3E-24 183.8 28.3 207 257-467 8-218 (456)
22 PF01943 Polysacc_synt: Polysa 99.8 4.3E-16 9.3E-21 145.1 32.7 271 43-329 1-272 (273)
23 TIGR01695 mviN integral membra 99.8 2.6E-16 5.5E-21 160.0 32.3 204 38-243 220-428 (502)
24 TIGR00797 matE putative efflux 99.8 5.2E-17 1.1E-21 156.6 24.1 194 269-466 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.8 2.2E-18 4.7E-23 147.1 8.9 162 269-432 1-162 (162)
26 PF01554 MatE: MatE; InterPro 99.7 1.3E-17 2.9E-22 142.2 6.7 160 49-209 1-162 (162)
27 PF03023 MVIN: MviN-like prote 99.7 3.2E-14 6.9E-19 141.1 31.6 203 39-243 196-403 (451)
28 TIGR02900 spore_V_B stage V sp 99.7 3.2E-15 6.9E-20 151.4 25.0 201 37-242 221-433 (488)
29 COG0728 MviN Uncharacterized m 99.7 7.2E-13 1.6E-17 129.5 33.7 204 38-243 229-437 (518)
30 PRK10459 colanic acid exporter 99.7 4.6E-13 1E-17 135.6 33.7 199 38-242 204-404 (492)
31 PF13440 Polysacc_synt_3: Poly 99.6 1.2E-12 2.5E-17 120.4 30.8 247 59-328 2-250 (251)
32 PRK15099 O-antigen translocase 99.6 3.4E-13 7.3E-18 133.4 26.3 198 37-241 211-410 (416)
33 COG2244 RfbX Membrane protein 99.5 2.6E-12 5.7E-17 129.8 25.4 185 36-225 208-394 (480)
34 PF04506 Rft-1: Rft protein; 99.3 6.7E-09 1.5E-13 103.9 33.4 420 45-467 5-470 (549)
35 KOG1347 Uncharacterized membra 99.3 4.7E-10 1E-14 110.6 20.2 205 257-466 24-229 (473)
36 KOG2864 Nuclear division RFT1 99.1 4E-06 8.7E-11 78.8 34.5 414 39-466 6-448 (530)
37 PF07260 ANKH: Progressive ank 98.9 1.6E-05 3.4E-10 71.8 28.7 245 39-292 9-267 (345)
38 PF04506 Rft-1: Rft protein; 98.6 1.3E-05 2.8E-10 80.6 22.2 203 40-243 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.3 6.7E-05 1.4E-09 62.3 17.4 79 163-243 2-80 (146)
40 PF14667 Polysacc_synt_C: Poly 98.2 9.7E-06 2.1E-10 67.4 10.3 79 385-467 2-80 (146)
41 PF01943 Polysacc_synt: Polysa 98.2 0.0006 1.3E-08 63.1 22.2 186 265-466 3-190 (273)
42 KOG2864 Nuclear division RFT1 98.2 0.0021 4.6E-08 61.1 24.2 201 40-242 238-448 (530)
43 PF13440 Polysacc_synt_3: Poly 97.9 0.008 1.7E-07 54.8 23.2 163 285-465 8-171 (251)
44 PF07260 ANKH: Progressive ank 97.8 0.011 2.3E-07 54.0 21.2 155 257-421 7-168 (345)
45 COG4267 Predicted membrane pro 97.6 0.058 1.3E-06 50.3 36.6 335 88-449 71-429 (467)
46 PF05975 EcsB: Bacterial ABC t 83.3 48 0.001 32.4 17.1 38 334-371 89-126 (386)
47 COG4267 Predicted membrane pro 82.0 49 0.0011 31.7 19.9 136 313-466 75-210 (467)
48 PF04505 Dispanin: Interferon- 56.8 67 0.0014 23.3 6.6 40 316-355 34-73 (82)
49 PTZ00370 STEVOR; Provisional 46.5 33 0.00072 31.3 4.4 35 440-475 255-292 (296)
50 PF04995 CcmD: Heme exporter p 34.1 1.2E+02 0.0027 19.0 4.4 10 468-477 31-40 (46)
51 TIGR03141 cytochro_ccmD heme e 33.2 1.1E+02 0.0025 19.1 4.1 12 444-456 8-19 (45)
52 TIGR01478 STEVOR variant surfa 29.8 57 0.0012 29.8 3.2 32 440-472 259-293 (295)
53 TIGR00822 EII-Sor PTS system, 26.8 5E+02 0.011 23.8 16.0 33 311-343 109-141 (265)
54 TIGR00383 corA magnesium Mg(2+ 23.1 2.5E+02 0.0054 26.4 6.5 57 409-469 253-317 (318)
55 PF06422 PDR_CDR: CDR ABC tran 21.6 66 0.0014 24.5 1.8 28 439-467 49-76 (103)
56 PF10160 Tmemb_40: Predicted m 21.5 6.2E+02 0.014 23.1 10.0 81 333-416 109-189 (261)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3.6e-56 Score=438.65 Aligned_cols=435 Identities=24% Similarity=0.350 Sum_probs=409.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011371 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (487)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (487)
++..|+++++++|+++++++..+++.+|+.++||+|++++++.++++++..+ ...+..|++.+..+.+||++|+||+++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 4578999999999999999999999999999999999999999999999998 888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 011371 117 LGVYMQRSWIVLFVCCVLLL-PLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (487)
+++..+++++++++.+++.. +.+.+.++++.+++.++|+.+.+..|+++..++.|+..+...+.+.+|+.||++.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999997766 55899999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHhccCc--CCcCCCCchHhhhchHHHHHHHhHHH
Q 011371 196 SLVALLVHIFVSWLFVNR-MQ-LGVIGTAATLNFSWWILVFGLFGYVSCGGC--PLTWTGFTLEAFSGLWQFVKLSAASG 271 (487)
Q Consensus 196 ~~~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 271 (487)
++++.++|+++|++|++. ++ +|+.|+++||++++.+..++.++++.+++. .....+..+.+++..|++++.|.|.+
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~ 251 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF 251 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence 999999999999999997 57 999999999999999999999988887642 23322333344578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011371 272 VMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVI 351 (487)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (487)
+++..+...+...+.+++++| ++++|+|+++.++.++.++++.+++++..|.+++++|++|++++++..+.+..+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~ 329 (455)
T COG0534 252 LESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLL 329 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHH
Q 011371 352 IGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGC 431 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 431 (487)
+++..+++++++++++.++|++|+++.+.+..++++..+..++++.+.+..+.+||.||+|.+++.++.+.|.+.+|+.+
T Consensus 330 ~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~ 409 (455)
T COG0534 330 IALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAY 409 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 011371 432 LMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETA 476 (487)
Q Consensus 432 ~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 476 (487)
++.++. +|..|+|++.. .++.+..++..+++++++|+++..+.
T Consensus 410 ~l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 410 LLGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 999544 99999999999 99999999999999998888776554
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=4.3e-52 Score=413.64 Aligned_cols=432 Identities=15% Similarity=0.171 Sum_probs=396.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011371 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (487)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~ 117 (487)
+..|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++..+ ...+..|++.+..+.++|++|++|++++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 358999999999999999999999999999999999999999999999888 7788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC--CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 011371 118 GVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLG--QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (487)
++..+.++.++.+++++..+ .+.+.++++.++. .|+|+.+.+..|+++..++.++..+...+.+++|+.||++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 99999999999998887775 4778889998884 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHHHHhcc-C--cCCcCCC-CchHhhhchHHHHHH
Q 011371 195 VSLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCG-G--CPLTWTG-FTLEAFSGLWQFVKL 266 (487)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~ 266 (487)
.+++..++|+++++++++.+ ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ .+..+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 99999999999999999753 68999999999999999887776655432 1 2222222 112235678999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 011371 267 SAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSV 346 (487)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~ 346 (487)
|.|.+++.........+.+.+++++| +.++++|+++.++.++.+++..+++++..|.+++++|++|++++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999988888888899998 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHh
Q 011371 347 VTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIG 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 426 (487)
++++++++..+++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.+++.++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Q 011371 427 VPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEA 473 (487)
Q Consensus 427 i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~ 473 (487)
+|+.+++.+..++|+.|+|++.. +++.+.+++.++++++.+|++..
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~-~~~~~~~~~~~~r~~~~~W~~~~ 468 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMF-LDWAVRGVLFYWRMVSGRWLWKY 468 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHcCccccCC
Confidence 99999998777899999999999 99999999999999999999833
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=8.5e-51 Score=404.46 Aligned_cols=425 Identities=20% Similarity=0.258 Sum_probs=386.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011371 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (487)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~ 117 (487)
+..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+ ...+..|++.+..+.++|++|++|++++
T Consensus 7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~~ 85 (464)
T PRK00187 7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEGA 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 468999999999999999999999999999999999999999999999888 6678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 011371 118 GVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSL 197 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 197 (487)
++.++.++.+..+++++..++..+.++++.+++.++|+.+.+..|+++..++.++..+...+++++|+.||++.+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~ 165 (464)
T PRK00187 86 TRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISL 165 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999988887776655779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHHHHhccC--cCCcCC-CCchHhhhchHHHHHHHhHH
Q 011371 198 VALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGG--CPLTWT-GFTLEAFSGLWQFVKLSAAS 270 (487)
Q Consensus 198 ~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~p~ 270 (487)
++.++|+++++++++.+ ++|+.|+++|+.+++....+...+++++++ .+.+++ +..+.+++..|++++.++|.
T Consensus 166 ~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~ 245 (464)
T PRK00187 166 AGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPI 245 (464)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhH
Confidence 99999999999999753 379999999999998887776666665432 111211 11223346789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 011371 271 GVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSV 350 (487)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 350 (487)
+++++.+.....+++.+++++| ++++++++++.++..+.+++..+++++..+.+++++|++|++++++..+.++.++.
T Consensus 246 ~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~ 323 (464)
T PRK00187 246 GGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGA 323 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 67899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHhhhhcCC--cH---HHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHH
Q 011371 351 IIGLFFWLLIMIYHNELALIFSS--SE---AVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLI 425 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 425 (487)
+++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||+|.+++.++++.|++
T Consensus 324 ~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~ 403 (464)
T PRK00187 324 VVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLV 403 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999964 44 68899999999999999999999999999999999999999999998999
Q ss_pred hHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 426 GVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 426 ~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
++|+++++.+++++|+.|+|+++. +++.+..+....+++.
T Consensus 404 ~ipl~~ll~~~~~~g~~Gvw~~~~-i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 404 GAPLAWLLAFTLGWGAVGVWWGLA-LGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHhccCCCceeeHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999888899999999999 9999998877666643
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8.9e-49 Score=391.48 Aligned_cols=434 Identities=19% Similarity=0.350 Sum_probs=394.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 011371 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (487)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~ 113 (487)
++.++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++... ...+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456789999999999999999999999999999999999999999999998776 667788999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 011371 114 YYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (487)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (487)
+++.++.++.++.+.+++++++.++ +.+.++++.+++.++++.+.+..|+++.+++.++..+...+++++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999998877754 677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHhccCcC--C-cCCCCchHhhhchHHHHH
Q 011371 193 AWVSLVALLVHIFVSWLFVNR----MQLGVIGTAATLNFSWWILVFGLFGYVSCGGCP--L-TWTGFTLEAFSGLWQFVK 265 (487)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 265 (487)
++.++++.++|+++++++++. .++|+.|+++++.+++++..++..++.++++.. . .+.++...+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999863 247999999999999999988887777654211 1 111112223467899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 011371 266 LSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVS 345 (487)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~ 345 (487)
.++|..+++..+...+.++..+++++| ++++++++++.++.++..+++.+++++..+.+++++|++|++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999998 668999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHH
Q 011371 346 VVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLI 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 425 (487)
.++++.++++.+++++.+++++..+|++|+++.+.+..++++..+..++.+++.+..+++++.||++.+++.++++.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Q 011371 426 GVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDK 471 (487)
Q Consensus 426 ~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~ 471 (487)
++|+.+++.+.+++|..|+|+++. +++.+..++.+.++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLI-IGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777899999999999 999999998888887766554
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=385.13 Aligned_cols=422 Identities=17% Similarity=0.162 Sum_probs=369.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011371 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (487)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (487)
+..|+++++++|.++++++..+++.+|+.++||+ |++++++++++.++..+ ...+..+++.+..+.++|++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4579999999999999999999999999999998 77899999999999988 677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 011371 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (487)
+++..++++.++++++++..++ ..+.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999988877754 678888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc-CcC-CcCCCCchHhhhchHHHHHHHhHHHHH
Q 011371 196 SLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG-GCP-LTWTGFTLEAFSGLWQFVKLSAASGVM 273 (487)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (487)
++++.++|+++++++++.+++|+.|+++|+.+++.+..++..+++.++ +.+ .+.+.++.+.++..|++++.|.|..++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 999999999999999998889999999999999999888776666553 111 111111111124678999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 011371 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIG 353 (487)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (487)
+..+...+.+.+.+++++| ++++++|+++.++.++.+++..+++++..|.+++++|++|++++|+..+.+.+++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 66899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccC---cchhhHHHHHHHHHHHhHHHH
Q 011371 354 LFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSG---WQSYVAYINLGCYYLIGVPLG 430 (487)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~l~ 430 (487)
.+.+++++++++++..+|++|+|+.+.+..++++..+..+......+..+++++.+ |+|.++..+.++.|+..
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~---- 398 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTL---- 398 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999998876443334444444455555 59999999998865422
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Q 011371 431 CLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDK 471 (487)
Q Consensus 431 ~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~ 471 (487)
+.. +.+|..|+|++.. +++.+..++..+++++ +|++
T Consensus 399 -~~~--~~~g~~Gvw~a~~-~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 399 -LTL--PWLGNHGLWLALT-VFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred -HHH--HHcCchHHHHHHH-HHHHHHHHHHHHHHHH-HHhc
Confidence 222 4679999999999 9999999988877665 5754
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=8.1e-49 Score=389.75 Aligned_cols=425 Identities=18% Similarity=0.216 Sum_probs=386.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011371 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (487)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (487)
+..|++++.++|.+++++...+++++|+.+++|+ |++++++++++.++..+ ...+..+++.+..+.++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 4689999999999999999999999999999995 99999999999999988 666888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 011371 117 LGVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (487)
+++.++.++.++.+++++..+ ++.+.++++.+++.++++.+.+..|+++..++.++..+.....+++|+.|+++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999987775 4788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCcCCcC--CCCchHhhhchHHHHHHHhHHHHH
Q 011371 196 SLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTW--TGFTLEAFSGLWQFVKLSAASGVM 273 (487)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~ 273 (487)
++++.++|+++++++++.+++|+.|+++++.+++.+..++..++.++++...++ +.++ .+++..|++++.|.|..++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELR-FNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCC-cCHHHHHHHHHhChhHHHH
Confidence 999999999999999988889999999999999999988877776654222222 2122 2346689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 011371 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIG 353 (487)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (487)
...+.+...+.+.+++++|+ +.++++|+++.++..+.+++..+++++..|.+++++|++|+|++++..+.+.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999998888988884 45799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHhhhhcCC-cHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHH
Q 011371 354 LFFWLLIMIYHNELALIFSS-SEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCL 432 (487)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 432 (487)
++.+++++.+++++..+|++ |+|+.+.+..++++..++.++++++.+..+.+++.||++.++..++.. +++++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 789999999999999999999999999999999999999999999886 6889999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCChH
Q 011371 433 MGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWD 470 (487)
Q Consensus 433 l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~ 470 (487)
+. +.+|+.|+|+++. +++.+..++...++++ +++
T Consensus 405 l~--~~~G~~Gvw~a~~-~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 405 LP--KWLGVDGVWLAMP-LSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HH--HHHCcchHhhHHH-HHHHHHHHHHHHHHHH-HHH
Confidence 87 5589999999999 9999988877766654 444
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=310.95 Aligned_cols=451 Identities=44% Similarity=0.723 Sum_probs=427.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 011371 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (487)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~ 113 (487)
+..+...|++++++.|+....+.....+.+++.++||+|+.++++.+++++..+.....+..|+..+..+.++|++|.++
T Consensus 21 ~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~ 100 (473)
T KOG1347|consen 21 SQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK 100 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc
Confidence 33467889999999999999999999999999999999999999999999999987888999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 011371 114 YYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (487)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (487)
++....+.+++........++...++.+.++++..+++++++...+..|.++..+..+..........++|++++.....
T Consensus 101 ~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 101 FTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCcCCcCCCCchHhhhchHHHHHHHhHHHHH
Q 011371 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (487)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (487)
+......++++.+++++++..++|..|++++..+++.+.......+......+..|..++.+ ++.++++++.+.|..++
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence 99999999999999999999999999999999999999999888887665555666666666 78899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 011371 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIG 353 (487)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (487)
..++.+.+.+..++.+.+++...++++.++..++....++++.+++.+...++++.+|+++++.+|.........++..+
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g 339 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIG 339 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999998778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHH
Q 011371 354 LFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLM 433 (487)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 433 (487)
...+..+....+.+..+|++|+++.+...+..++++...++++.+.++.+..++.|+++...++++.+.+++++|+...+
T Consensus 340 ~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l 419 (473)
T KOG1347|consen 340 ASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYL 419 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhhhhhhc
Q 011371 434 GWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANTRVRKWAET 486 (487)
Q Consensus 434 ~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
.+..++|..|.|++.. .+..++.........+.+|+++.++..++...++.+
T Consensus 420 ~~~~~~g~~glw~G~~-~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~ 471 (473)
T KOG1347|consen 420 GFFTKFGVKGLWIGIL-LGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVL 471 (473)
T ss_pred EEEEecCceEEEeehH-HHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccC
Confidence 9888999999999999 998888888888888899999999999998887664
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.9e-36 Score=307.28 Aligned_cols=413 Identities=14% Similarity=0.091 Sum_probs=347.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchHHH
Q 011371 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIEL-AAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGV 119 (487)
Q Consensus 43 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-g~~~~a~~~~~~~~~~~~-~g~~~~~~~~~s~~~~~~~~~~~~~ 119 (487)
+.|.+.-.+++++++.+++++|..+++| +|++++ |+++.+.++...+..... .|++++..+...++.+++ +++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788899999999999999999999999 799999 899999999877333333 578888777777664322 56776
Q ss_pred HHHHHHHHHHHHH-HHHH-HHHHhHHHHHHHc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 011371 120 YMQRSWIVLFVCC-VLLL-PLYLFASPVLKLL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (487)
Q Consensus 120 ~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (487)
.+..........+ ++.. +.+.+.+++..++ +.+++..+.+..|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6766665555444 3334 3467778887877 4466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHHHHHHHHHhccCcCCcCCCCchHhhhchHHHHHHHhHHHHH
Q 011371 196 SLVALLVHIFVSWLFVNRMQLGVIGTA--ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (487)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (487)
+++..++++...+++. .++|..|++ +++++++.+..++.+.+.+|++.+.+. +++ .+++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 9998887766443333 567999988 999999999888777666554322211 111 1235689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH
Q 011371 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMM-IPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (487)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (487)
+....+...+|..+.+.++ +.++++|+.+.++.++... +..+++++..|.+++++|++|+++.++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877776 5678999999999988764 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHhhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHH
Q 011371 353 GLFFWLLIMIYHNELALIFSS----SEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (487)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (487)
+.+.++++.++++++..++.+ |++.++.+..++++++++.++.+++.++.+.+++.||+|.+++.+..+ .+++++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHH
Confidence 999999999999999999976 567788999999999999999999999999999999999999999998 688999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011371 429 LGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 467 (487)
Q Consensus 429 l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 467 (487)
+++++. +.+|..|+|+++. +++.+..++..++.+|+
T Consensus 393 l~~~l~--~~~G~~G~~~a~~-i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 393 LSLLLI--FPLGLVGIALATS-AASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 999987 7799999999999 99999988887777765
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5.3e-36 Score=303.05 Aligned_cols=414 Identities=12% Similarity=0.117 Sum_probs=345.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 011371 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (487)
Q Consensus 44 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~ 122 (487)
.|.+.|.+++++...+.+++|+.+++| +|++++|.++.+.++..++......|++++..+.++|..|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 7999999999999998885555567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 011371 123 RSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (487)
.++.+..+.+++..++ +.+.+++...+..+++. ..++++..+..++..+....++++|+.+|.+..+..+++..+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999988877754 56677766666555443 346788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cCCCcchhHHHHHHHHHHHHHHHHHHHhcc-CcC--CcCCCCchHhhhchHHHHHHHhHHHHH
Q 011371 202 VHIFVSWLFVNR-----MQLGVIGTAATLNFSWWILVFGLFGYVSCG-GCP--LTWTGFTLEAFSGLWQFVKLSAASGVM 273 (487)
Q Consensus 202 ~~i~l~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (487)
+++.++..++.. .++++.|+++++.++..+..++..++.+|+ +.+ ..+.+.+..+++..|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776655542 134677888899999888888776655443 211 111111223346789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 011371 274 LCLENWYYRILISMTGNLQN-----AE---IAVDAL-SICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIV 344 (487)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~-~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~ 344 (487)
++...+...+|+.++++... .. ...+.| +++.++.++...+..+++++..|.+++..|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888765321 01 223333 3566777788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHH
Q 011371 345 SVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYL 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (487)
..++...++.|.++++..+++++..++.++++ +..+++++++..++.+++.+..+++++.||+|..++.+.++ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999886543 67789999999999999999999999999999999999998 68
Q ss_pred HhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011371 425 IGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 467 (487)
Q Consensus 425 ~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 467 (487)
+++++++.+...|.+|..|+|+++. +++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~-i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFI-ITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999988876557899999999999 99999999888888764
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1e-35 Score=286.80 Aligned_cols=337 Identities=26% Similarity=0.473 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 011371 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (487)
Q Consensus 49 p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 128 (487)
|.++++++..+...+|+.+++++|++++|+++++.++..+ ...+..|++++..+.++++.|++|+++.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998887 777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 011371 129 FVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVS 207 (487)
Q Consensus 129 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 207 (487)
.+++++..++ +.+.+++..+++.+++..+++..+++++.+..++..+..++.+++++.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999887754 788889988888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CCcchhHHHHHHHHHHHHHHHHHHHhcc-CcCCcCCCCchHhhhchHHHHHHHhHHHHHHHHHHHHHHHH
Q 011371 208 WLFVN-RMQ-LGVIGTAATLNFSWWILVFGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRIL 284 (487)
Q Consensus 208 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 284 (487)
+++++ .++ +|+.|+++++.+++++..++..++.+|+ +.+.++++....+++..|++++++.|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 567 8899999999999999988887776653 33333222222234678999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011371 285 ISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYH 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
+.+++.++ +.++++|+++.++.++..+++.+++++..|.++++++++|+++.++..+++.++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCcHHHHHHHHHHHHHH
Q 011371 365 NELALIFSSSEAVLQAVNKLSILL 388 (487)
Q Consensus 365 ~~i~~l~~~~~~~~~~~~~~l~i~ 388 (487)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=7.1e-34 Score=280.71 Aligned_cols=404 Identities=11% Similarity=0.007 Sum_probs=339.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHH
Q 011371 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (487)
Q Consensus 43 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~ 121 (487)
++|.+.+...++++..+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 79999999999999998756656888888888999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 011371 122 QRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL 200 (487)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (487)
++++.+.++.++++.+ ++.+.+++...+..+++. ..+..+..+..++..+...+.+.+|+.||++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888775 478888888877666642 24456666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc-CcCCcCCCCchHhhhchHHHHHHHhHHHHHHHHHHH
Q 011371 201 LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENW 279 (487)
Q Consensus 201 ~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 279 (487)
++|+.+ +++.+.. .|+.|+++++++++.+..+...++.+|+ +.+.+..+.+. +++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444322 3999999999999999877766666543 22221112222 245689999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 011371 280 YYRILISMTG-NLQNAEIAVDALSICMTINGW-EMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFW 357 (487)
Q Consensus 280 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (487)
....++.+++ .+| ++++|+|+.+.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998885 776 7799999999999874 5899999999999999985 6788999999999999999999999
Q ss_pred HHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHHh
Q 011371 358 LLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVF 437 (487)
Q Consensus 358 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 437 (487)
+++++++++++.++.+|+ ++++..++++++++.++...+..+...+.+.++++......+.. .++++++++++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999876 67788899999999999888888877777888888777777665 789999999999 8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 438 HQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 438 ~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
.+|..|+++++. +++.+...+......+
T Consensus 384 ~~G~~G~a~a~~-is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYM-ATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 899999999999 9999999877765553
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=7.7e-29 Score=244.93 Aligned_cols=386 Identities=16% Similarity=0.117 Sum_probs=333.5
Q ss_pred cChh-hHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Q 011371 71 LGDI-ELAAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLP-LYLFASPVLK 147 (487)
Q Consensus 71 lg~~-~~g~~~~a~~~~~~~~~~~~-~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 147 (487)
+|.. +..++..+.++..++...+. .+++++..|..++.. ++++++.++..+..+....+.++++++ .+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 56789999999998544444 568999999999998 788899999999888777777766664 4788899888
Q ss_pred Hc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCC---cchhH
Q 011371 148 LL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLG---VIGTA 222 (487)
Q Consensus 148 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~a 222 (487)
.+ +.+++..+.+...+++..+..++.++..++.+++++++|...+....++.++..++..+++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 4567888999999999999999999999999999999999999999988887765544443332 46 88899
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcCCcCCCCchHhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 011371 223 ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALS 302 (487)
Q Consensus 223 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (487)
+|..++.++..++.+...+|.+.+.+.+. +. +.+..|++++...|..++....++...+++.+.+.++ +.++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKF-DW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccC-CC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHHH
Confidence 99999999999888887777644433221 11 1246889999999999999999999999999999988 55788999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcC----CcHHH
Q 011371 303 ICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFS----SSEAV 377 (487)
Q Consensus 303 ~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~ 377 (487)
.+.++.++.. .+..+++++..|.+++...++|.++.++..+++++..+.+.+|.++++..+++++++++. -|++.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999987 567799999999999999999999999999999999999999999999999999999974 25666
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 011371 378 LQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQT 457 (487)
Q Consensus 378 ~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~ 457 (487)
.+.....+++++++.++.+++..+...+++.||+|.++..+.++ .++++.+++++. +.+|..|+++++. ++.++..
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~--~~~g~~Glala~s-l~~~i~~ 393 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLV--PFFGVAGLALATS-LSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHH
Confidence 88899999999999999999999999999999999999999998 799999998888 8999999999999 9999999
Q ss_pred HHHHHHHHhC
Q 011371 458 LILAIITIRC 467 (487)
Q Consensus 458 ~~~~~~~~~~ 467 (487)
++....++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888888776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.98 E-value=4.1e-27 Score=228.18 Aligned_cols=420 Identities=12% Similarity=0.037 Sum_probs=348.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh-hHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHhhhcCCCcch
Q 011371 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDI-ELAAISIANNVIVGFDFGLLL-GMASALETLCGQAFGAKRYYM 116 (487)
Q Consensus 40 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~g~~~~a~~~~~~~~~~~~~-g~~~~~~~~~s~~~~~~~~~~ 116 (487)
.+.++|.+.-....++++.+.+++...+++. +|.. ...++.+|..+.+++--.+.. .++++..|...++..+++.++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3567777777888888889999998888888 7885 567999999999985554444 479999999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCC---hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 011371 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQP---DDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (487)
.++..+........+.+.++++ .++.+++......+ ++....+....+++.+..++.++.....+.+++.+|...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 7777777664555555555544 56667666344222 3333357778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCcCCcCCCCchHhhhchHHHHHHHhHHHH
Q 011371 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGV 272 (487)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 272 (487)
.+..+..++.-+.....+.........+.++++.++.+++.++.+...+|.+...+++.. .+ .+..|++.+.-.|..+
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~-~~-~~~lk~~~~~~~p~~l 243 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFG-FK-DPGLKRFLKLMLPALL 243 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCC-CC-chhHHHHHHHHHHHHH
Confidence 999988888777555544443222367889999999999999999888886433332211 11 1568999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011371 273 MLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVI 351 (487)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (487)
.....++...+|+.+.+.+. +.+++.++.+.|+.++.. .+..+++++..|.++++..++|.++.++..+.+++++++
T Consensus 244 ~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 457889999999999988 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHhhhhcC----CcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhH
Q 011371 352 IGLFFWLLIMIYHNELALIFS----SSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGV 427 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 427 (487)
.++|.++++.++++++++++. -+++........+..+.++.++..+..++...+++.+|+|.|+++.+++ .++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHH
Confidence 999999999999999999873 2455577888999999999999999999999999999999999999998 79999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011371 428 PLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 467 (487)
Q Consensus 428 ~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 467 (487)
.+++.+. +.+|..|.+.+.. ++.++...+.++..+|+
T Consensus 401 ~l~~~l~--~~~~~~giala~s-~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 401 LLNLLLI--PPLGHVGLALATS-LAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHH--hhccchHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 9997777 8899999999999 88888888888877776
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=1.4e-27 Score=241.40 Aligned_cols=398 Identities=11% Similarity=0.066 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 011371 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLG 118 (487)
Q Consensus 40 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~ 118 (487)
.++..+.+.+..+++....+.+++..++++| +||+++|.++.+..+..++......|++++. .|. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccCC--H
Confidence 4678899999999999999999999999999 7999999999999999986777778888764 222 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 011371 119 VYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSL 197 (487)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 197 (487)
+..++.+.+..+.++++.++ +.+.+++..+++ +++. ...+++..+..++..+...+...++..++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 34455566666666665544 444555544443 4332 34567777778888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCcCCcCCCCchHhhhchHHHHHHHhHHHHHHHHH
Q 011371 198 VALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLE 277 (487)
Q Consensus 198 ~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 277 (487)
...+....+...+.. .++|..+.+++..++..+..+......++ +.++++ ++ +++..|++++++.|...+++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-ee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 888877777666554 47899999999999987776554333222 222221 11 2356789999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 011371 278 NWYYRILISMTGNLQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (487)
.+..+.|.++++++.. ++++|.|+.+.++.+... .+...++++..|.+++. ++|.++.++.+++..+....+++|.
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888763 788999999999998765 45556788999999885 5788999999999999999999999
Q ss_pred HHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHH
Q 011371 357 WLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWV 436 (487)
Q Consensus 357 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 436 (487)
++++.+++++++.++.+|+ +..+...+++++++.++..+.......+++.||+|..+..+++. .++.+|..+.+.
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~-- 375 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGG-- 375 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHH--
Confidence 9999999999999988766 78899999999999999999999999999999999999999887 678888877777
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 437 FHQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 437 ~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
+.+|..|+++++. +++.+......+...|
T Consensus 376 ~~~G~~g~a~a~~-i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QLAGLIGVALGFL-LVQIINTILSYFLMIK 404 (492)
T ss_pred hhccHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7789999999999 9999888877776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=2.2e-25 Score=224.89 Aligned_cols=391 Identities=14% Similarity=0.093 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011371 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (487)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~ 117 (487)
..+++.|.+.....+++.+.+.+++....++| +|++++|.++.+.++..++......|++.+..+.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 46888999999999999999999999999999 79999999999999999977777899999999999988655554444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 011371 118 GVY-MQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (487)
Q Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (487)
+.. ....+......+.+.........+. + +.....+++..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------D----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 3444433333333333222222211 1 1233446778888899999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCcCCcCCCCchHhhhchHHHHHHHhHHHHHHHH
Q 011371 197 LVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCL 276 (487)
Q Consensus 197 ~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 276 (487)
+.. ..-......+.. .......++..++......+...+..+++........+. .++..|++++++.|...++..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHHH
Confidence 444 111122222221 244445666666666655555544432211111111111 346789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 011371 277 ENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (487)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (487)
..+..+.|.++++.+.. ++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998873 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHH
Q 011371 357 WLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWV 436 (487)
Q Consensus 357 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 436 (487)
.+++..+++++..++.+++ +..+...++++++..++.++.......+++.|+++...+.+.++ .++++.+++.++
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li-- 382 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLI-- 382 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHH--
Confidence 9999999999999988776 55688999999999999999999999999999999999999998 689999999998
Q ss_pred hcCchhHHHHHHHHH
Q 011371 437 FHQGVMGIWAGMIFG 451 (487)
Q Consensus 437 ~~~g~~G~~~a~~~~ 451 (487)
+.+|..|+..++. .
T Consensus 383 ~~~g~~g~~~a~~-~ 396 (480)
T COG2244 383 PRFGLIGAAIATA-S 396 (480)
T ss_pred HhhhhhhHHHHHH-H
Confidence 8899999999886 5
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=5.7e-21 Score=188.84 Aligned_cols=208 Identities=24% Similarity=0.261 Sum_probs=198.9
Q ss_pred hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011371 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (487)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 336 (487)
++..|+++++++|..+.++.......+|++++++++ ++++++-+++.++..+.+.+..+++.+..+.++|.+|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 357889999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHH
Q 011371 337 GAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAY 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (487)
++++..+++...+++++++..++...+++++..++++++|+.+.+..|+++..++.++..+..+..+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH-hc-CchhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011371 417 INLGCYYLIGVPLGCLMGWV-FH-QGVMGIWAGMIFGGTAIQTLILAIITIRCD 468 (487)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~-~~-~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~ 468 (487)
.++++ .++|+.+++++++. .. +|+.|+++|+. +++.+..++...++++++
T Consensus 171 ~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~-ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATV-IARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHH-HHHHHHhhHHHHHhccccccchhHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 99998 69999999999976 35 99999999999 999999998888888765
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=1.2e-20 Score=186.60 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=192.8
Q ss_pred hchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 011371 258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKG 337 (487)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~ 337 (487)
+..|++++.+.|..++++.......+|+.++++++. +.++++.+++.++.++...+..+++.+..+.+++++|++|+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 457899999999999999999999999999999852 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHH
Q 011371 338 AKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYI 417 (487)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 417 (487)
+++..++++.++++++++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+..++.+++++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 418 NLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 418 ~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
++++ .++++++++++++.+++|+.|+++|+. +++.+..++...++++
T Consensus 165 ~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~-is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVG-NILNIVLDLWLVMGLHMNVQGAALATV-IAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9998 689999999999878899999999999 9999988776665554
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=2.5e-20 Score=186.07 Aligned_cols=204 Identities=16% Similarity=0.127 Sum_probs=190.8
Q ss_pred hchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 011371 258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKG 337 (487)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~ 337 (487)
+..|++++.++|..++++.......+|+.+++++| ++++++++++.++..+.+.+..+++++..+.+++++|++|+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45889999999999999999999999999999998 7789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcC--CcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhH
Q 011371 338 AKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFS--SSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVA 415 (487)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (487)
+++..+.++.+++.++++.+++.+++++++..++. .|+|+.+.+..++++..++.++..+..+..+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011371 416 YINLGCYYLIGVPLGCLMGWV----FHQGVMGIWAGMIFGGTAIQTLILAIITI 465 (487)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~i~~~~~~~~~~ 465 (487)
+.++++ .++++++.+++++. +++|+.|+|+|+. +++.+..++..+.+.
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~-is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLT-ISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999997 79999999998864 4789999999999 999998877655554
No 19
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=2.2e-20 Score=186.37 Aligned_cols=205 Identities=20% Similarity=0.121 Sum_probs=187.8
Q ss_pred hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011371 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (487)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 336 (487)
++..|++++.+.|.+++++...+...+|+.+++++| ++++++++++.++..+...+..+++++..|.+++++|++|++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 356899999999999999999999999999999998 678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHH
Q 011371 337 GAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAY 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (487)
++++..+.+..+.++++++..++.+ +.+++..+++.|+|+.+.+..++++..++.++..+.....+++++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877765 578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 417 INLGCYYLIGVPLGCLMGWV----FHQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
.++++ .++++++++++++. |++|+.|+++|+. +++.+..+....++++
T Consensus 163 ~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~-i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 163 ISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTA-LVSNGMALALALYIRR 214 (464)
T ss_pred HHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHH-HHHHHHHHHHHHHHHh
Confidence 99998 68899999998743 3589999999999 9988777655555544
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=3.9e-20 Score=184.31 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=193.7
Q ss_pred hchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011371 258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNL-QNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (487)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 336 (487)
+..|++++.+.|..++++...+...+|+.+++++ | ++++++++++.++.++...+..+++.+..+.+++++|++|+|
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4578999999999999999999999999999996 6 778999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHH
Q 011371 337 GAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAY 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (487)
++++..+.+..+.++++++.+++..++++++..+++.|+++.+.+..++++..++.++..+.....+++++.||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011371 417 INLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 467 (487)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 467 (487)
.++++ .++++++++++++.+++|+.|+++|+. +++.+..++..++++++
T Consensus 167 ~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~-is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 167 LMVIG-ALINIVLDYLFIGWLDWGLTGAAIATA-LAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 99998 699999999999777899999999999 99999988776666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=6e-20 Score=183.77 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=192.5
Q ss_pred hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011371 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (487)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 336 (487)
++..|++++.+.|..++++.......+|..+++++| ++++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 467899999999999999999999999999999998 668899999999988888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHH
Q 011371 337 GAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAY 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (487)
+.++..+.++.+.+.++++.+++++++++++..+++.|+++.+.+..++++..++.++..+.....+++++.||+|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011371 417 INLGCYYLIGVPLGCLMGWV----FHQGVMGIWAGMIFGGTAIQTLILAIITIRC 467 (487)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 467 (487)
.+.++ .++++++++++++. +.+|+.|+++++. +++.+..++..++.+++
T Consensus 166 ~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~-is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATA-IVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 99998 58999999988743 4689999999999 99999988777766654
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=4.3e-16 Score=145.08 Aligned_cols=271 Identities=15% Similarity=0.118 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHH
Q 011371 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (487)
Q Consensus 43 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~ 121 (487)
+.|.+.....+++...+.+++...+++| +|++++|.++.+.++..++......|++++..+.+++...+ +++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888999999999999999999999 79999999999999999866667899999999888877432 34445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 011371 122 QRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (487)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (487)
........+.+++...+..... ..+.+ +... .+........+..........++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS----FFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444443333333322212 33333 2211 12222222225677888889999999999999999999988
Q ss_pred HHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCcCCcCCCCchHhhhchHHHHHHHhHHHHHHHHHHHHH
Q 011371 202 VHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYY 281 (487)
Q Consensus 202 ~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 281 (487)
...++...++.. +.+..+..++..++..+...+...+.+|+. +.++. ..+++..|++++++.|..++++...+..
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRFS---FFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccc---ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776666653 345888999999999888887777776542 22222 2224678999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 282 RILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANE 329 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~ 329 (487)
..|.++++.+.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998874 88999999999999999999999999999999875
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.79 E-value=2.6e-16 Score=159.97 Aligned_cols=204 Identities=14% Similarity=0.108 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011371 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (487)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~ 117 (487)
+..|++++.+.|..++++...+...+|+.+.+++|++++++++.+.++..+....+..+++++..|.++++++++|+++.
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46799999999999999999999999998866689999999999999988744456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 011371 118 GVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQ----PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (487)
++.+++.+......+++..+ +..+++++..++.+ ++|..+.+..++++++++.++..+.....+.+++.||++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 99999999999998888875 47889999887755 45778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011371 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (487)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (487)
++.+....++|++++++++.. +|..|+++++.+++.+..++..++.+|+
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988764 5999999999999999988887777663
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.78 E-value=5.2e-17 Score=156.56 Aligned_cols=194 Identities=18% Similarity=0.205 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011371 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (487)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (487)
|.+++++...+...+|+.++++++ ++++++|+.+.++..+...+..+++++..|.++++.|++|+|+.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999998 668899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHH
Q 011371 349 SVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (487)
.+.++++.+++++++++++..+++.|++..+.+..+++++.++.++.++.....+.+++.||++...+.++++ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987888889999999999999999999999999999999999999999998 588999
Q ss_pred HHHHHHH-Hhc-CchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 429 LGCLMGW-VFH-QGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 429 l~~~l~~-~~~-~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
.++++.+ ..+ .|..|++++.. +++.+..++...+.++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~-~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATV-ISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 9888875 345 67999999999 9999988877766664
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.76 E-value=2.2e-18 Score=147.13 Aligned_cols=162 Identities=23% Similarity=0.389 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011371 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (487)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (487)
|..++++.+.....++..+++++| ++++++++++.++.++...+..+++++..+.+++++|++|++++++..+.+..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999997 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHH
Q 011371 349 SVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (487)
...++++.++...++++++..+|++|+++.+.+..++++..++.++.++.....+++++.||+|.+++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 011371 429 LGCL 432 (487)
Q Consensus 429 l~~~ 432 (487)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=1.3e-17 Score=142.23 Aligned_cols=160 Identities=26% Similarity=0.386 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 011371 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (487)
Q Consensus 49 p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 128 (487)
|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++.+..+.++|++|++|++++++.++.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999999 777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-HHHHHH
Q 011371 129 FVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL-LVHIFV 206 (487)
Q Consensus 129 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 206 (487)
..++++..++ +.+.+++..+++.++|+.+.+..|+++..+..++..+.....+++++.||++..++.+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999988865 78899999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 011371 207 SWL 209 (487)
Q Consensus 207 ~~~ 209 (487)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 27
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.71 E-value=3.2e-14 Score=141.09 Aligned_cols=203 Identities=15% Similarity=0.147 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 011371 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLG 118 (487)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~ 118 (487)
..|++++...|..++....++...+|+.+.+++++.++++++.+.++.++....+..++++...|.+++...++|.++.+
T Consensus 196 ~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~ 275 (451)
T PF03023_consen 196 NLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFR 275 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 011371 119 VYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (487)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (487)
+.+++++....++.++..+ ++.++++++..+. .++|..+.....+++++++.++..+...+...+.+.+|++.++
T Consensus 276 ~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~ 355 (451)
T PF03023_consen 276 KTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPV 355 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHH
Confidence 9999999999999999985 4799999997663 2556677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011371 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (487)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (487)
+.++++.++|++++..+... +|..|.++++.++..+..++.....+|+
T Consensus 356 ~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 356 RISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888865 5999999999999999998888887764
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.71 E-value=3.2e-15 Score=151.41 Aligned_cols=201 Identities=15% Similarity=0.127 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh---------hHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011371 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDI---------ELAAI-SIANNVIVGFDFGLLLGMASALETLC 105 (487)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~---------~~g~~-~~a~~~~~~~~~~~~~g~~~~~~~~~ 105 (487)
++..|++++.+.|.+++++...+.+.+|+.++++ +++. .+|.+ +.+.++..+ ...+..+++.+..|.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999988 4321 22322 345556666 4567889999999999
Q ss_pred HhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011371 106 GQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQ 184 (487)
Q Consensus 106 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 184 (487)
++..|++|+++.++..++.+.+..+++++..+ +..++++++.++..++ ++.++++++++..++..+.....+.++
T Consensus 300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~ 375 (488)
T TIGR02900 300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQ 375 (488)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888775 4788888888776543 356789999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011371 185 SQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (487)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (487)
+.||++..++.++...++|++++++++....+|+.|+++++.+++.+..++..++.+|
T Consensus 376 ~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 376 GLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988874345799999999999999998888777765
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.66 E-value=7.2e-13 Score=129.47 Aligned_cols=204 Identities=15% Similarity=0.141 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 011371 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (487)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~ 117 (487)
...|++.+...|+.++..++++...+|+.+.+.+.+...+.+.++..+.++..-.+..++++...|.+|++..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 36899999999999999999999999999999999999999999999999977789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 011371 118 GVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (487)
++..+.++.++.+.+++... +..+++|+...+. -+++........+..+.++.++..+..++...+.+++|+|.+
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 99999999999999999985 4799999997653 244556667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011371 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (487)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (487)
+++.+++.++|+.+++.+... +|..|.++++.++.++++.+.++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999777754 5888899999999989888887777765
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.66 E-value=4.6e-13 Score=135.63 Aligned_cols=199 Identities=13% Similarity=-0.004 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011371 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (487)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (487)
+..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.......+...++....|.+++. ++|+++
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~ 281 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEK 281 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHH
Confidence 467999999999999999999999999999999 69999999999999988745555566778888999886 578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 011371 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (487)
.++.+++.......++++..++ ..++++++.++.+++ +.++.+.++++++...+..+.......+++.||++.....
T Consensus 282 ~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 359 (492)
T PRK10459 282 LRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKW 359 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHH
Confidence 9999999999888888887754 688888887776543 5667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011371 196 SLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (487)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (487)
+++..+++++..+.+.. .+|..|+++++.+++.+......++..|
T Consensus 360 ~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 360 NVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888877666654 3599999999999999888877776644
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.63 E-value=1.2e-12 Score=120.37 Aligned_cols=247 Identities=13% Similarity=0.099 Sum_probs=177.5
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 011371 59 SMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLP 137 (487)
Q Consensus 59 ~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (487)
..+++...+++| +|++++|.++....+..+.......|+++.... . .++|+++.++..+..+....+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999 799999999999999998555557777776444 2 2355666666666655554444433332
Q ss_pred HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011371 138 LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLG 217 (487)
Q Consensus 138 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 217 (487)
+. ..+..++ .+++ ...++....+..+...........+++.+|.+.....+....+....+..++.. .+.+
T Consensus 77 ~~---~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 LA---ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred HH---HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 21 1111233 3332 223455666777888889999999999999999999999988887555444444 3448
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccCcCCcCCCCchHhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 011371 218 VIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIA 297 (487)
Q Consensus 218 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
..+..++..++.++..++.....++ +.+ ..+ +.+..| .++.+.|....++......+.|.++++.+. ++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRR-KLR--LSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-ccC--CCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 8888888888888777665543332 111 111 112234 799999999999999999999999999944 3889
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011371 298 VDALSICMTINGWEM-MIPLAFFAGTGVRVAN 328 (487)
Q Consensus 298 ~~~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~ 328 (487)
+|.|+++.++..... .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 9999999999999986
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.61 E-value=3.4e-13 Score=133.44 Aligned_cols=198 Identities=7% Similarity=-0.046 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 011371 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (487)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (487)
++..|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 4568999999999999999999999999999985 89999999999999988645778999999999999995 5677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 011371 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (487)
+.++.+++.......++++..++ ++++++++.++.+++ .+++.+++++++++.++...+..+...+.+.++.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988888888888777654 689999998887654 334677889988888888877777777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 011371 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVS 241 (487)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 241 (487)
..+...++++++++++++. +|..|+++++.+++.+...+......
T Consensus 366 ~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999998875 59999999999999998887665543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.54 E-value=2.6e-12 Score=129.80 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 011371 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (487)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~ 114 (487)
.++..|++++.++|..++.....+.+.+|+.++++ +|++++|.|+.+..+... ...+...++.+..|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 35689999999999999999999999999999999 699999999988888887 7888899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 011371 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (487)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (487)
++.++..++.+.+....+++..++ ..++++++..+.+++. ..+...++++++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999988865 7888899877766543 2267788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHH
Q 011371 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATL 225 (487)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~ 225 (487)
..+.++.++|++++++++.. +|..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 99999999999999999864 5888888888
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.34 E-value=6.7e-09 Score=103.95 Aligned_cols=420 Identities=10% Similarity=-0.022 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 011371 45 YIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVG-FDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (487)
Q Consensus 45 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~g~~~~a~~~~~~-~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~ 122 (487)
+.+.-.++.++...+.+++-+.++-| ++|+.+|..++=..+... ..+..=-++..+..+.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45566777788888888875555555 899999988655444432 2333445676665443332211112222222222
Q ss_pred HHHHHHHHHHHHHHHHHH--hH--HHH--HHHcCCC-hH---HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHhccc
Q 011371 123 RSWIVLFVCCVLLLPLYL--FA--SPV--LKLLGQP-DD---VAELSGMVSIWMIPLHFSFAF----QFPLQRFLQSQLK 188 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~--~~--~~i--~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~----~~~~~~~l~~~~~ 188 (487)
....+..++.+++..+++ .. ... ..+.... ++ ..+.....+.+...+.....+ ....+..+.-..|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 222223333322221111 00 000 1111111 11 111222223334444443333 3333455555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-cCCCc-----ch-hHHHHHHHHHHHHHHHHH-HHh-cc-C---cCCcCCCCch-
Q 011371 189 NMVIAWVSLVALLVHIFVSWLFVNR-MQLGV-----IG-TAATLNFSWWILVFGLFG-YVS-CG-G---CPLTWTGFTL- 254 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~i~l~~~li~~-~~~g~-----~g-~a~a~~i~~~~~~~~~~~-~~~-~~-~---~~~~~~~~~~- 254 (487)
.+.-........+++..+....... ++++. .+ +.++..++++...+.... +.. .. . .+...++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 5555555555555554443333211 11111 11 234444455444332211 111 11 1 1111111111
Q ss_pred --HhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 011371 255 --EAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGN--LQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANE 329 (487)
Q Consensus 255 --~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~ 329 (487)
+....-+++++........++...+..+.|.+++.. +.+ .++-|.|++++++.+++- ++...+..+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011124689999999999999999999999998888 664 778899999999998875 66777888888888887
Q ss_pred hcCCCh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 011371 330 LGAGNG---------KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPI 400 (487)
Q Consensus 330 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 400 (487)
..+++. +++.+.....++....+++.+.......++.+..++.+++=....+...++.++.+.++.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 754422 44666777777777777777777777777788888765432223467889999999999999999
Q ss_pred hhhHhhccCcchhhHHHHHH--HHHHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011371 401 LSGVAVGSGWQSYVAYINLG--CYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 467 (487)
Q Consensus 401 ~~~~l~~~g~~~~~~~~~~~--~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 467 (487)
...+.++..+.+.....+-. ...++.+..++++... ++|..|..+|-. +...++-+.+..+.++.
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~-iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANC-INMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999887765554432 1235666677887733 699999999999 99999999887777653
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.27 E-value=4.7e-10 Score=110.63 Aligned_cols=205 Identities=12% Similarity=0.141 Sum_probs=185.2
Q ss_pred hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 011371 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGW-EMMIPLAFFAGTGVRVANELGAGNG 335 (487)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~a~~p~~~~~~g~~~~ 335 (487)
..+.|++.+++.|..+..........++....+++| +..+++.+++....+. -+-+..++..+..|.+++++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 467899999999999999999999999999999999 4578899998888776 4567789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhH
Q 011371 336 KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVA 415 (487)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (487)
+.......++........++... ++.+.+++...+++|+++...+..+.++..+..+-......+...+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999998888888888765 45567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 416 YINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
++...+ ..+++++++++++.+++|..|+..+.. +++++.......+...
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~-~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALV-ASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHH-HHHHHHHHHHHHHhee
Confidence 999998 799999999999999999999999999 9999988876666654
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=4e-06 Score=78.84 Aligned_cols=414 Identities=13% Similarity=0.010 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCC---
Q 011371 39 ESKKLWYIVGPAIFSRLASYSMLVI-TQAFAGHLGDIELAAISIANNVIVG-FDFGLLLGMASALETLCGQAFGAKR--- 113 (487)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~~~~~~~i-~~~~i~~lg~~~~g~~~~a~~~~~~-~~~~~~~g~~~~~~~~~s~~~~~~~--- 113 (487)
...+-.+.+...+..+++..+.+++ +...+.+++++.+|..++-..+.+- ..+..--++.-+ ....|..+
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d~ 80 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPADT 80 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCcc
Confidence 3444555566666667777666665 5555555899999999877666554 122222244444 22233322
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 011371 114 YYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDD-VAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (487)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (487)
.++..+..+.+..+.++..+.+.-+|+ ..... .++. ..+....-..+...++....+...+.-..|..-+.+.-
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~wl--~~~~s---~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~ 155 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYFWL--GFLSS---SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLR 155 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHH--HHhhc---cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 224444444444444444444332221 11110 0110 01111111233333334334444444555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hc-CCCcchhHHHHHHHHHHHHHHHHHH-HhccC-cCCc---------CCCCchH--hh
Q 011371 193 AWVSLVALLVHIFVSWLFVN-RM-QLGVIGTAATLNFSWWILVFGLFGY-VSCGG-CPLT---------WTGFTLE--AF 257 (487)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~-~~-~~g~~g~a~a~~i~~~~~~~~~~~~-~~~~~-~~~~---------~~~~~~~--~~ 257 (487)
.+...+..++.-...+.... .. .+++.-.|+|.....+...+...++ +..++ .+.. +++.... ..
T Consensus 156 ~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ 235 (530)
T KOG2864|consen 156 AIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGI 235 (530)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccc
Confidence 66666665555222222222 21 2344445555555544444422222 22222 1100 0010000 00
Q ss_pred hchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCh
Q 011371 258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQN-AEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNG 335 (487)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~ 335 (487)
-.-++..+.........+...+....+..+++.... +-.+-|.|.++++..++.. ++...+-.......++...+++.
T Consensus 236 ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~q 315 (530)
T KOG2864|consen 236 FFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQ 315 (530)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccch
Confidence 112466777777777777788888877766652211 1224458999998887765 67778888888888887766655
Q ss_pred hhHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcch
Q 011371 336 KGAKF---ATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQS 412 (487)
Q Consensus 336 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 412 (487)
|+.|+ +....++....+++.+.......++.+..++++++=.-..+...+++++++.++.+++.+...+..+.++.+
T Consensus 316 e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~ 395 (530)
T KOG2864|consen 316 ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSR 395 (530)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHH
Confidence 55554 444555555555555555555566778888866442222356789999999999999999999999987766
Q ss_pred hhHHHH---HHHHHHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 413 YVAYIN---LGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 413 ~~~~~~---~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
.....+ .+. -++.+.+++++. ..+|..|...|-. +...++-+....+.++
T Consensus 396 qi~~~n~~mlaf-SviflilsylL~--~~~~~~GlIlANi-iNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 396 QIDKHNKFMLAF-SVIFLILSYLLI--RWFGLVGLILANI-INMSLRILYSLRFIRH 448 (530)
T ss_pred HHHhcccchhHH-HHHHHHHHHHHH--HHhchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 554333 232 456677889988 7788999999988 8888877766555544
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.86 E-value=1.6e-05 Score=71.79 Aligned_cols=245 Identities=13% Similarity=0.042 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 011371 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-L-GD-IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (487)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g~-~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (487)
..+.+.++-.|+.++..+..+...+-+.-++| - .+ +.+++|+++..+.-+ ...+...+-+....++ +++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~~V-----~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLVFV-----NSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHHHh-----cchhh
Confidence 57899999999999999999998888888887 4 33 449999999999887 6666666666644444 33333
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHH-HhHHHHH-HHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 011371 116 MLGVYMQRSWIVLFVCCVLLL-PLY-LFASPVL-KLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (487)
+.+..... .....+...+.. +.+ .+...++ ..++.++++.+.+...+.++.+.-++.++...+++++--.+++...
T Consensus 83 rr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 RRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 22222222 222222222222 223 3344444 5668899999999999999999999999999999988877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCc-chhH---HHHHHHHHH---HHHHHHHHHhccCcCCcCCCCchHhhhchHHHHH
Q 011371 193 AWVSLVALLVHIFVSWLFVNRMQLGV-IGTA---ATLNFSWWI---LVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVK 265 (487)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~g~-~g~a---~a~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (487)
...++...+..+++...++.. +... ..+. .+...+..+ ...+.++.--+++. +...+...+....++++++
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~-p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDII-PQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcccCCChhHHHHHH
Confidence 666666655555555455531 1211 1111 122222211 11111111111111 1122222222345789999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhc-CC
Q 011371 266 LSAASGVMLCLENWYYRILISMTGN-LQ 292 (487)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~-~~ 292 (487)
+.+|.+........+..+.+.+++| ++
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~ 267 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLS 267 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999998 44
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.58 E-value=1.3e-05 Score=80.61 Aligned_cols=203 Identities=9% Similarity=0.012 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc--
Q 011371 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH--L-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY-- 114 (487)
Q Consensus 40 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~-- 114 (487)
-+++++.+...+.+.+.-.+.+-.|+.++.. + +.++-|.|+++.++-++..=.+...+..+.....++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4788899999999999999999999999999 6 8899999999999999977788889999998899988765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 011371 115 -------YMLGVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQ 186 (487)
Q Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 186 (487)
++..+.+...+.+...++++... ....++.++.++.++.-..+.+...+++++..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 23555666667777777766554 3667777777765543333445677899999999999999999999988
Q ss_pred cchhHHHHHH---HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011371 187 LKNMVIAWVS---LVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (487)
Q Consensus 187 ~~~~~~~~~~---~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (487)
...+.....+ ....++.+..+++++.. ++|..|..+|..+...+-......+.+|.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766655544 44456667778888875 78999999999999999888888777663
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.34 E-value=6.7e-05 Score=62.32 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=72.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011371 163 SIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (487)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (487)
+++.+++.++..+....+..+++.||++.....++++.++|+++++.+++. +|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999854 699999999999999998888877776
Q ss_pred c
Q 011371 243 G 243 (487)
Q Consensus 243 ~ 243 (487)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.25 E-value=9.7e-06 Score=67.40 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011371 385 SILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIIT 464 (487)
Q Consensus 385 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~ 464 (487)
+++++++.++.++....++++++.||+|..++.+.++ .++++++++.+. |++|..|+++|+. +++.+...+..+..
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li--~~~G~~Gaa~a~~-i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILI--PRFGIYGAAIATA-ISEIVSFILNLWYV 77 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHH--HHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999998 799999999998 9999999999999 99999999888888
Q ss_pred HhC
Q 011371 465 IRC 467 (487)
Q Consensus 465 ~~~ 467 (487)
+|.
T Consensus 78 ~k~ 80 (146)
T PF14667_consen 78 RKK 80 (146)
T ss_pred HHH
Confidence 875
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.19 E-value=0.0006 Score=63.06 Aligned_cols=186 Identities=19% Similarity=0.172 Sum_probs=112.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 011371 265 KLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMI-PLAFFAGTGVRVANELGAGNGKGAKFATI 343 (487)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~a~~p~~~~~~g~~~~~~~~~~~~ 343 (487)
|-+......+........+...++++.. ++++.|.|+....+.++...+ ..+++++..-.+++...+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 4445555556666655555555555554 288899999999999888766 668888887777765432 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHH-HHhhHHhhhhhHhhccCcchhhHHHHHHHH
Q 011371 344 VSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTI-LLNSVQPILSGVAVGSGWQSYVAYINLGCY 422 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 422 (487)
.......+..+.... ...+...+..++ .+.. ..+..... ++..........+++.++.+.....++..
T Consensus 80 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLL-----ILLIASFFGNPS--LSLI---LIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS- 148 (273)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHcCCch--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333333332222222 222222444332 1111 12222222 56778888899999999999988888887
Q ss_pred HHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 423 YLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 423 ~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
.+..+.....+.+ ...+..+..++.. ++..+..++.....+|
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 149 SLLSLLLILLLLF-LGSSLWGFLLGLV-ISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3555555555443 3335888888888 8888888777777765
No 42
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=0.0021 Score=61.07 Aligned_cols=201 Identities=8% Similarity=0.048 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011371 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH---LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (487)
Q Consensus 40 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (487)
-++..+......-+.+.-.+.+--|++++.. ++-++-|.|.++.++-++..-.+...+........+|...++++|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 3556666666677788888888899999884 3667888999998888886777778888888889999888777776
Q ss_pred HHH---HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 011371 117 LGV---YMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (487)
Q Consensus 117 ~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (487)
.++ ++...+.+...++++.+. ....++.++.+.+++.-....+...+++++..+++.+++.+..+++.+....+..
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 655 445555555666655443 3566777777776654333445567899999999999999999999987766554
Q ss_pred H---HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011371 193 A---WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (487)
Q Consensus 193 ~---~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (487)
- ....+..+...+++++++-.+ |..|..+|..+...+-.+..+.+.++
T Consensus 398 ~~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 398 DKHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344555677788899998765 77999999999887777776666654
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.89 E-value=0.008 Score=54.77 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=101.9
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 285 ISMTGNLQNAEIAVDALSICMTINGWEMMIP-LAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIY 363 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
..++++..+ +++.|.|+....+..+...+. .++.+.. .+. .++|+++.++..........+.+.+..+ +
T Consensus 8 ~~~lar~l~-~~~~G~~~~~~s~~~~~~~~~~~g~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 77 (251)
T PF13440_consen 8 LILLARYLG-PEDFGIYALIFSIVSILSIVASLGLRQSL----VRS-AARDKQDIRSLLRFSLLVSLLLAVILAI----L 77 (251)
T ss_pred HHHHHHHCC-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hccCHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 344444442 788999999999888877764 3443332 222 3356666666666555444444433333 2
Q ss_pred hHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHHhcCchhH
Q 011371 364 HNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMG 443 (487)
Q Consensus 364 ~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G 443 (487)
...+...+ ++++ ...++.+..+..++..+.......+++.+|.+.......... +..+.....+.+ ...+..+
T Consensus 78 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~ 150 (251)
T PF13440_consen 78 AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNLWS 150 (251)
T ss_pred HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhHHH
Confidence 23333333 3332 334456666777788899999999999999999988888873 444333333332 3348888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011371 444 IWAGMIFGGTAIQTLILAIITI 465 (487)
Q Consensus 444 ~~~a~~~~~~~i~~~~~~~~~~ 465 (487)
..++.. ++..+..+......+
T Consensus 151 ~~~~~~-~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFI-ISALLALLISFYLLR 171 (251)
T ss_pred HHHHHH-HHHHHHHHHHHHHhc
Confidence 889988 888887775555444
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.80 E-value=0.011 Score=53.98 Aligned_cols=155 Identities=10% Similarity=0.110 Sum_probs=109.4
Q ss_pred hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011371 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAE-IAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNG 335 (487)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~ 335 (487)
..++++++++-.|..+++....+..++.+.-+++-.+++ +.+++|+++..+.-++..+...+.++....+.. +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 356889999999999999999999999988887743333 558999999999999888888887776666532 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----HHHhhH-HhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccC
Q 011371 336 KGAKFATIVSVVTSVIIGLFFWLL-----IMIYHN-ELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSG 409 (487)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 409 (487)
+ ++....+. ...+..++.+ .--++. .+.++++-|+++.+.+...+.++.+..+++++.....+++.=..
T Consensus 82 s--rr~~vl~~---~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r 156 (345)
T PF07260_consen 82 S--RRKAVLCM---AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHR 156 (345)
T ss_pred h--hHHHHHHH---HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 2 12222222 2222222211 112333 33466677899999999999999999999999999999887556
Q ss_pred cchhhHHHHHHH
Q 011371 410 WQSYVAYINLGC 421 (487)
Q Consensus 410 ~~~~~~~~~~~~ 421 (487)
++......++..
T Consensus 157 ~s~iV~~aSI~~ 168 (345)
T PF07260_consen 157 HSWIVGSASIAD 168 (345)
T ss_pred ceeEeehHHHHH
Confidence 666655555554
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.62 E-value=0.058 Score=50.30 Aligned_cols=335 Identities=12% Similarity=0.063 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHH
Q 011371 88 GFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMI 167 (487)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 167 (487)
++..+++.|+....++.+|+..=++|.+++..-+.-...+....+.++... +-....+.+. .|=...+
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si-----~yk~l~~ 138 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSI-----VYKILAC 138 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhH-----HHHHHHH
Confidence 345668889999999999999988888887665554444444433333311 1111222222 1112333
Q ss_pred hHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc-CcC
Q 011371 168 PLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG-GCP 246 (487)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~ 246 (487)
......+...+...++.+.+|.+...+.-.++.++...+..++-. .+..|..++..++..+.......+..|. +-+
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 444555666677789999999999999999998888887776654 3899999999999888777766666553 111
Q ss_pred CcCCCCchHhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH------HHHHHHHHHHHHHHHH-----
Q 011371 247 LTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVD------ALSICMTINGWEMMIP----- 315 (487)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~----- 315 (487)
. ...++.- ...+--....+-.+...++..+|+++.=..+++++-.+ .|.+..-...+...|.
T Consensus 216 ~-~i~FdFL------~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 216 R-RIGFDFL------LYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred c-ccceehh------hhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 1 1111111 11111112233445566666677655332222222211 2333222223322222
Q ss_pred HHHHHHHHHHHHH----hhcCC-------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHH
Q 011371 316 LAFFAGTGVRVAN----ELGAG-------NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKL 384 (487)
Q Consensus 316 ~~i~~a~~p~~~~----~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 384 (487)
..+.+...+.--+ -.|.+ +.++.....++...-..-+-..+++.++.+++.+...++-|+- ..+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHH
Confidence 1222233332211 11222 2333344444455555566677788888899999888876542 3444
Q ss_pred HHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHH-hcCchhHHHHHHH
Q 011371 385 SILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWV-FHQGVMGIWAGMI 449 (487)
Q Consensus 385 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-~~~g~~G~~~a~~ 449 (487)
+++-.++..+......+-++..-..+-+..+-.+..- .+.|-.+.++.... |.+--.|...|..
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~lgp~~~g~gff~a~f 429 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLELGPGYYGVGFFLASF 429 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHHhCccceehHHHHHHH
Confidence 5555566555555555555555556656655555443 45666666654421 3333344444444
No 46
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=83.30 E-value=48 Score=32.44 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Q 011371 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIF 371 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 371 (487)
+.++.+++.+++.+.+........+++.+..-|+...-
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999988888888777777643
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=82.05 E-value=49 Score=31.71 Aligned_cols=136 Identities=16% Similarity=0.088 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHH
Q 011371 313 MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTI 392 (487)
Q Consensus 313 ~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 392 (487)
.+..++.....-.++...=+|++++....+.-+.......+...+..+++. .++. ....+ ...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~---si~yk--~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQY---SIVYK--ILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCch---hHHHH--HHHHHHH
Confidence 455666666666777777677788877777666666655555555322211 2221 11222 2233334
Q ss_pred HHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011371 393 LLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIR 466 (487)
Q Consensus 393 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 466 (487)
+..+...+....+.+.+|.|.......++ ..+.+.++.++- +.+..|...+.. ++..+...+......|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~---~~~ie~lLL~~~-IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFL---KSPIEGLLLTLD-IGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HhHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 44566667788889999999988877777 677787877775 558899999999 8888877766655554
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=56.79 E-value=67 Score=23.32 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH
Q 011371 316 LAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLF 355 (487)
Q Consensus 316 ~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 355 (487)
.-++......+.+.+.++|++++++.-+++.++..+-...
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444566777888899999999999988777554444
No 49
>PTZ00370 STEVOR; Provisional
Probab=46.54 E-value=33 Score=31.27 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhC---ChHHHHHH
Q 011371 440 GVMGIWAGMIFGGTAIQTLILAIITIRC---DWDKEAET 475 (487)
Q Consensus 440 g~~G~~~a~~~~~~~i~~~~~~~~~~~~---~~~~~~~~ 475 (487)
+..|++.-.+ +.-.+..++++++++|+ .|+++.++
T Consensus 255 ~Pygiaalvl-lil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 255 YPYGIAALVL-LILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred cccHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 3445554444 55566666666666655 68887765
No 50
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=34.07 E-value=1.2e+02 Score=19.04 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=4.4
Q ss_pred ChHHHHHHHH
Q 011371 468 DWDKEAETAN 477 (487)
Q Consensus 468 ~~~~~~~~~~ 477 (487)
+..+++++..
T Consensus 31 ~~~~~l~~~~ 40 (46)
T PF04995_consen 31 RLRKELKRLE 40 (46)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 51
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=33.16 E-value=1.1e+02 Score=19.10 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 011371 444 IWAGMIFGGTAIQ 456 (487)
Q Consensus 444 ~~~a~~~~~~~i~ 456 (487)
+|.++. ++..+.
T Consensus 8 VW~sYg-~t~l~l 19 (45)
T TIGR03141 8 VWLAYG-ITALVL 19 (45)
T ss_pred HHHHHH-HHHHHH
Confidence 444544 443333
No 52
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=29.82 E-value=57 Score=29.76 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhC---ChHHH
Q 011371 440 GVMGIWAGMIFGGTAIQTLILAIITIRC---DWDKE 472 (487)
Q Consensus 440 g~~G~~~a~~~~~~~i~~~~~~~~~~~~---~~~~~ 472 (487)
...|++.-.+ +.-.+..++++++++|+ .|+++
T Consensus 259 ~Pcgiaalvl-lil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 259 LPYGIAALVL-IILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred cccHHHHHHH-HHHHHHHHHHHHHHHHhhccccccc
Confidence 3445555444 55566666666666655 67765
No 53
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=26.82 E-value=5e+02 Score=23.84 Aligned_cols=33 Identities=3% Similarity=-0.152 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 011371 311 EMMIPLAFFAGTGVRVANELGAGNGKGAKFATI 343 (487)
Q Consensus 311 ~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~ 343 (487)
+..+...++.......-+...++|.++.++...
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 334455556666666666777788888766543
No 54
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.12 E-value=2.5e+02 Score=26.45 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=28.4
Q ss_pred CcchhhHHHHHHHHHHHhHHHHHHHHHH-------hcCc-hhHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q 011371 409 GWQSYVAYINLGCYYLIGVPLGCLMGWV-------FHQG-VMGIWAGMIFGGTAIQTLILAIITIRCDW 469 (487)
Q Consensus 409 g~~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g-~~G~~~a~~~~~~~i~~~~~~~~~~~~~~ 469 (487)
..++..-..++++ .+.+|..++-+.+ |... ..|.++... ..++..+..+++++|++|
T Consensus 253 ~~N~~mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~--~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLI--VMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHHHHH--HHHHHHHHHHHHHHHcCC
Confidence 3444444455554 4556666664432 1111 124444333 333445557778888787
No 55
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=21.58 E-value=66 Score=24.53 Aligned_cols=28 Identities=14% Similarity=-0.092 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011371 439 QGVMGIWAGMIFGGTAIQTLILAIITIRC 467 (487)
Q Consensus 439 ~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 467 (487)
+--.|+.++.. +..++..++..-+.+..
T Consensus 49 WRN~GIli~f~-i~f~~~~~~~~e~~~~~ 76 (103)
T PF06422_consen 49 WRNFGILIAFW-IFFIVLTLLATEFIKFE 76 (103)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 33556667777 66666666555555443
No 56
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=21.54 E-value=6.2e+02 Score=23.06 Aligned_cols=81 Identities=9% Similarity=-0.049 Sum_probs=42.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcch
Q 011371 333 GNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQS 412 (487)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 412 (487)
+..+..++....+..++...++.=++..+.+++ ..++.+|.+....+...++ +.-..++..++......-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW-~~~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFW-FISSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehH-HHHHHHHHHHHHHHHHHHhcccccc
Confidence 345566666666666666666666666666665 5566555555555444333 3333344444443333344455555
Q ss_pred hhHH
Q 011371 413 YVAY 416 (487)
Q Consensus 413 ~~~~ 416 (487)
.|..
T Consensus 186 LPar 189 (261)
T PF10160_consen 186 LPAR 189 (261)
T ss_pred CCCC
Confidence 4443
Done!