Query 011371
Match_columns 487
No_of_seqs 256 out of 2085
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 06:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011371.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011371hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 42.2 98 0.0071 26.4 40.4 26 437-463 405-430 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 41.9 99 0.0072 26.3 20.5 24 216-239 407-430 (447)
3 d1nkzb_ f.3.1.1 (B:) Light-har 7.9 1.8E+02 0.013 15.5 4.0 34 334-367 7-40 (41)
4 d2oara1 f.16.1.1 (A:10-118) Ga 5.3 1.7E+02 0.012 19.8 2.2 15 443-458 61-75 (109)
5 d1m56d_ f.23.8.1 (D:) Bacteria 4.9 2.9E+02 0.021 14.9 4.1 28 330-357 4-31 (42)
6 d1jt8a_ b.40.4.5 (A:) Archaeal 4.4 2.4E+02 0.018 18.6 2.5 18 1-18 1-18 (102)
7 d1ijdb_ f.3.1.1 (B:) Light-har 3.7 3.5E+02 0.025 14.2 3.8 31 334-364 8-38 (40)
8 d3dhwa1 f.58.1.1 (A:6-208) D-m 3.5 5.7E+02 0.042 18.4 4.6 36 39-74 129-165 (203)
9 d1j1va_ a.4.12.2 (A:) Chromoso 3.2 3.5E+02 0.026 17.2 2.6 31 314-344 40-70 (94)
10 d1oiga_ g.3.18.1 (A:) Dumpy {F 3.1 1.9E+02 0.014 13.2 0.6 10 2-11 11-20 (26)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=42.15 E-value=98 Score=26.36 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=14.1
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHH
Q 011371 437 FHQGVMGIWAGMIFGGTAIQTLILAII 463 (487)
Q Consensus 437 ~~~g~~G~~~a~~~~~~~i~~~~~~~~ 463 (487)
..+|..+.++... ....+..++....
T Consensus 405 ~~~g~~~~~~~~~-~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 405 DFFGWDGGFMVMI-GGSILAVILLIVV 430 (447)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHH-HHHHHHHHHHHHH
Confidence 4667766666555 5444544444333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=41.91 E-value=99 Score=26.33 Aligned_cols=24 Identities=17% Similarity=-0.039 Sum_probs=11.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHH
Q 011371 216 LGVIGTAATLNFSWWILVFGLFGY 239 (487)
Q Consensus 216 ~g~~g~a~a~~i~~~~~~~~~~~~ 239 (487)
.|..+..+......++..++....
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444444444444333
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.85 E-value=1.8e+02 Score=15.48 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 011371 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNEL 367 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (487)
+.|+..+....+.+....++++.=++.+...+++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4567778888888888888887777777666553
No 4
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.26 E-value=1.7e+02 Score=19.84 Aligned_cols=15 Identities=0% Similarity=-0.099 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 011371 443 GIWAGMIFGGTAIQTL 458 (487)
Q Consensus 443 G~~~a~~~~~~~i~~~ 458 (487)
|.++... +..++.+.
T Consensus 61 G~fi~a~-InFlIiA~ 75 (109)
T d2oara1 61 NVLLSAA-INFFLIAF 75 (109)
T ss_dssp HHHHHHH-HHHHHHHH
T ss_pred HHHHHHH-HHHHHHHH
Confidence 4555555 55444444
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.86 E-value=2.9e+02 Score=14.86 Aligned_cols=28 Identities=7% Similarity=-0.152 Sum_probs=14.7
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 011371 330 LGAGNGKGAKFATIVSVVTSVIIGLFFW 357 (487)
Q Consensus 330 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (487)
.|+-|.+.-.+.+.--+++..-..+.+.
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i 31 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIV 31 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655655555555444444333
No 6
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.35 E-value=2.4e+02 Score=18.59 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=13.6
Q ss_pred CCCCCcccccCCCccCCC
Q 011371 1 MPSNGALEDTKVPLLDDL 18 (487)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (487)
|++++++...+.+++.++
T Consensus 1 m~~~~~~~~~~~~lp~~e 18 (102)
T d1jt8a_ 1 MAEQQQEQQIRVRIPRKE 18 (102)
T ss_dssp CCCCSSCCCCCCCCSCCS
T ss_pred CCccccCcceeeECCCCC
Confidence 788888888888777544
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.74 E-value=3.5e+02 Score=14.19 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=21.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011371 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYH 364 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
+.++..+....+.+....+.++.=++.+...
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 3567777778888887777777666655543
No 8
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=3.48 E-value=5.7e+02 Score=18.42 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh
Q 011371 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDI 74 (487)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~ 74 (487)
..|.++..+.|..++.........+....+.. +|..
T Consensus 129 ~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 129 VRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred hHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666665555554 4443
No 9
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=3.24 E-value=3.5e+02 Score=17.22 Aligned_cols=31 Identities=6% Similarity=0.048 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 011371 314 IPLAFFAGTGVRVANELGAGNGKGAKFATIV 344 (487)
Q Consensus 314 ~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~ 344 (487)
++--......+.+++.+|.+|+..+-..+++
T Consensus 40 L~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kk 70 (94)
T d1j1va_ 40 LAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHhCCCCchHHHHHHHH
Confidence 3344445567889999988888887776665
No 10
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.13 E-value=1.9e+02 Score=13.19 Aligned_cols=10 Identities=50% Similarity=0.567 Sum_probs=0.0
Q ss_pred CCCCcccccC
Q 011371 2 PSNGALEDTK 11 (487)
Q Consensus 2 ~~~~~~~~~~ 11 (487)
|||++-...+
T Consensus 11 psn~acvnqk 20 (26)
T d1oiga_ 11 PSNQACVNQK 20 (26)
T ss_dssp STTCEECSSS
T ss_pred CccHhHhccc
Done!