BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011374
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 21/191 (10%)
Query: 212 TFDTLAXXXXXXXXXXXXLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271
TFD + +E LK E ++RVG +G LLYGPPGTGK+ L A+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 272 LNFDVYDLELSSV------EGNKDLRQILI-ATENKS-ILVVEDIDCCLEMQDRLAKAKA 323
+ + S + E + +R++ A E++ I+ ++++D R ++ +
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAI--GGRRFSEGTS 296
Query: 324 AIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDV 383
A ++ R TL LL +DG + + G +II+ TN D LDPALLRPGR+D
Sbjct: 297 ADREIQR---------TLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDR 345
Query: 384 HIHMSYCTPCG 394
+ + G
Sbjct: 346 KVEIPLPNEAG 356
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 211 ATFDTLAXXXXXXXXXXXXLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270
+T+D + +E +K E ++ +G A +G +LYGPPGTGK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 271 YLN---FDVYDLELSSV---EGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAK 322
+ + V EL EG++ +R++ + SI+ +++ID R+ +
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI--GSTRVEGSG 262
Query: 323 AAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 382
++ R T+ LLN +DG +S + II TN D LDPALLRPGR+D
Sbjct: 263 GGDSEVQR---------TMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRID 311
Query: 383 VHIH 386
I
Sbjct: 312 RKIE 315
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 21/161 (13%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
L + + Y+++G RG LLYGPPGTGK+ L+ A+AN + S EG
Sbjct: 192 LVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGP 251
Query: 288 KDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345
+ +R + +A EN SI+ ++++D + D + + R+ + LL
Sbjct: 252 RMVRDVFRLARENAPSIIFIDEVDSIATKR----------FDAQTGSDREVQRILIE-LL 300
Query: 346 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 386
+DG S + +I TN D LDPALLRPGR+D I
Sbjct: 301 TQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIE 339
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 27/165 (16%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 288 KDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR---VTLS 342
++ I + K SI+ +++ID AI A G+R TL
Sbjct: 97 SLVKDIFKLAKEKAPSIIFIDEID--------------AIAAKRTDALTGGDREVQRTLM 142
Query: 343 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
LL +DG + + GD + II TN D LDPA+LRPGR D I +
Sbjct: 143 QLLAEMDG-FDARGDVK-IIGATNRPDILDPAILRPGRFDRIIEV 185
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 19/161 (11%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS-VE-----G 286
FLK E Y +G +G LL GPPGTGK+ L A+A + + + SS +E G
Sbjct: 29 FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLG 88
Query: 287 NKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGL 344
+R + + + SI+ +++ID + K++AA + + N TL+ L
Sbjct: 89 ASRVRDLFETAKKQAPSIIFIDEIDA-------IGKSRAAGGVV---SGNDEREQTLNQL 138
Query: 345 LNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
L +DG S I++ TN + LDPAL+RPGR D +
Sbjct: 139 LAEMDGFGSENA-PVIVLAATNRPEILDPALMRPGRFDRQV 178
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 73/168 (43%), Gaps = 35/168 (20%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQ 292
FLK + R+G +G LL GPPGTGK+ L A+A N + + S D +
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGS------DFVE 87
Query: 293 ILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDL-----------YRSACNQGN---- 337
+ + ++D A+AKA P + +R A G
Sbjct: 88 LFVGV------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDER 135
Query: 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
TL+ LL +DG S G I++ TN D LDPALLRPGR D I
Sbjct: 136 EQTLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
+KR + +K +G +G L+YGPPGTGK+ L A A N L + EG
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260
Query: 288 KDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345
K +R + K +I+ ++++D R K+ ++ R T+ LL
Sbjct: 261 KLVRDAFALAKEKAPTIIFIDELDAI--GTKRFDSEKSGDREVQR---------TMLELL 309
Query: 346 NFIDGLWSSCGDERI-IIFTTNHKDRLDPALLRPGRMDVHIH 386
N +DG S D+R+ ++ TN D LDPALLR GR+D I
Sbjct: 310 NQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 29/168 (17%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284
+E L E Y+ +G +G +LYG PGTGK+ L A+AN + + S +
Sbjct: 198 VELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257
Query: 285 -EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN---- 337
+G + RQI +A EN SI+ +++ID R N G
Sbjct: 258 GDGPRLCRQIFKVAGENAPSIVFIDEIDAI---------------GTKRYDSNSGGEREI 302
Query: 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
+ T+ LLN +DG + GD ++I+ TN + LDPAL+RPGR+D I
Sbjct: 303 QRTMLELLNQLDG-FDDRGDVKVIM-ATNKIETLDPALIRPGRIDRKI 348
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 72/168 (42%), Gaps = 35/168 (20%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQ 292
FLK + R+G +G LL GPPGTG + L A+A N + + S D +
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGS------DFVE 87
Query: 293 ILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDL-----------YRSACNQGN---- 337
+ + ++D A+AKA P + +R A G
Sbjct: 88 LFVGV------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDER 135
Query: 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
TL+ LL +DG S G I++ TN D LDPALLRPGR D I
Sbjct: 136 EQTLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 26/162 (16%)
Query: 240 YKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY--LNF-DVYDLELSSV---EGNKDLRQI 293
+K +G G LL GPPG GK+ L A+AN LNF V EL ++ E + +RQ+
Sbjct: 36 FKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV 95
Query: 294 LIATENKSILVV--EDIDC-CLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG 350
+N + V+ +++D C DR A + NQ LL +DG
Sbjct: 96 FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRV-------VNQ--------LLTEMDG 140
Query: 351 LWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTP 392
L + + I+ TN D +DPA+LRPGR+D + + P
Sbjct: 141 LEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 24/169 (14%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE------- 285
+LK E + ++G +G LL GPPG GK+ L A+A V L ++ E
Sbjct: 24 YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVPFLAMAGAEFVEVIGG 81
Query: 286 -GNKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLS 342
G +R + ++ I+ +++ID + K ++ + N TL+
Sbjct: 82 LGAARVRSLFKEARARAPCIVYIDEIDA-------VGKKRSTTMSGF---SNTEEEQTLN 131
Query: 343 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 391
LL +DG+ ++ D I++ +TN D LD AL+RPGR+D H+ + T
Sbjct: 132 QLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 238 EFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLR 291
E + +G +G LLYGPPGTGK+ A+AN + + S + EG + +R
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 292 QILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL 351
++ K C+ D + A D N+ R L L+ +DG
Sbjct: 293 ELFEMARTKK--------ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE-LITQLDG- 342
Query: 352 WSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
+ G+ +++ F TN + LDPALLRPGR+D + S
Sbjct: 343 FDPRGNIKVM-FATNRPNTLDPALLRPGRIDRKVEFS 378
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 17/154 (11%)
Query: 240 YKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN--YLNF-DVYDLELSSV---EGNKDLRQI 293
+ + G +G L YGPPG GK+ L A+AN NF + EL ++ E ++R+I
Sbjct: 41 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 100
Query: 294 LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353
+ V+ + D +AKA+ A ++ ++ +L +DG+
Sbjct: 101 FDKARQAAPCVL-----FFDELDSIAKARGGNIGDGGGAADR----VINQILTEMDGM-- 149
Query: 354 SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
S II TN D +DPA+LRPGR+D I++
Sbjct: 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 183
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS---VEGN 287
L+ +K +G RG LLYGPPGTGK+ + A+AN F + E+ S E
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 288 KDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345
+LR+ E +I+ ++++D AI + R +S LL
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELD--------------AIAPKREKTHGEVERRIVSQLL 329
Query: 346 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 394
+DGL I++ TN + +DPAL R GR D + + G
Sbjct: 330 TLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 17/154 (11%)
Query: 240 YKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN--YLNF-DVYDLELSSV---EGNKDLRQI 293
+ + G +G L YGPPG GK+ L A+AN NF + EL ++ E ++R+I
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
Query: 294 LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353
+ V+ + D +AKA+ A ++ ++ +L +DG+
Sbjct: 563 FDKARQAAPCVL-----FFDELDSIAKARGGNIGDGGGAADR----VINQILTEMDGM-- 611
Query: 354 SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
S II TN D +DPA+LRPGR+D I++
Sbjct: 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS---VEGN 287
L+ +K +G RG LLYGPPGTGK+ + A+AN F + E+ S E
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 288 KDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345
+LR+ E +I+ ++++D AI + R +S LL
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELD--------------AIAPKREKTHGEVERRIVSQLL 329
Query: 346 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 394
+DGL I++ TN + +DPAL R GR D + + G
Sbjct: 330 TLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 17/154 (11%)
Query: 240 YKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN--YLNF-DVYDLELSSV---EGNKDLRQI 293
+ + G +G L YGPPG GK+ L A+AN NF + EL ++ E ++R+I
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
Query: 294 LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353
+ V+ + D +AKA+ A ++ ++ +L +DG+
Sbjct: 563 FDKARQAAPCVL-----FFDELDSIAKARGGNIGDGGGAADR----VINQILTEMDGM-- 611
Query: 354 SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
S II TN D +DPA+LRPGR+D I++
Sbjct: 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS---VEGN 287
L+ +K +G RG LLYGPPGTGK+ + A+AN F + E+ S E
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 288 KDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345
+LR+ E +I+ ++++D AI + R +S LL
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELD--------------AIAPKREKTHGEVERRIVSQLL 329
Query: 346 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 394
+DGL I++ TN + +DPAL R GR D + + G
Sbjct: 330 TLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 35/171 (20%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKD 289
L +L+ ++++G +G L+ GPPGTGK+ L A+A + + S D
Sbjct: 27 LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS------D 80
Query: 290 LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLY-----------RSACNQGN- 337
++ + + +D +AK A P + R A G
Sbjct: 81 FVEMFVGVGASRV------------RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128
Query: 338 ---RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
TL+ +L +DG + G I+I TN D LDPALLRPGR D +
Sbjct: 129 DEREQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQV 177
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS--- 283
+E L+ +K +G RG LLYGPPGTGK+ + A+AN F + E+ S
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 284 VEGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341
E +LR+ E +I+ ++++D AI + R +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELD--------------AIAPKREKTHGEVERRIV 325
Query: 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 394
S LL +DGL I++ TN + +DPAL R GR D + + G
Sbjct: 326 SQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS--- 283
+E L+ +K +G RG LLYGPPGTGK+ + A+AN F + E+ S
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 284 VEGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341
E +LR+ E +I+ ++++D AI + R +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELD--------------AIAPKREKTHGEVERRIV 325
Query: 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 394
S LL +DGL I++ TN + +DPAL R GR D + + G
Sbjct: 326 SQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS--- 283
+E L+ +K +G RG LLYGPPGTGK+ + A+AN F + E+ S
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 284 VEGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341
E +LR+ E +I+ ++++D AI + R +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELD--------------AIAPKREKTHGEVERRIV 325
Query: 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 394
S LL +DGL I++ TN + +DPAL R GR D + + G
Sbjct: 326 SQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELSSVEG 286
FLK + +G +G LL GPPG GK+ L A+A ++ D +E+ G
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 287 NKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN---RVTL 341
+R + + + I+ +++ID + S GN TL
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRG--------------SGVGGGNDEREQTL 154
Query: 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
+ LL +DG +++ TN D LDPALLRPGR D I +
Sbjct: 155 NQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 198
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELSSVEG 286
FLK + +G +G LL GPPG GK+ L A+A ++ D +E+ G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 287 NKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN---RVTL 341
+R + + + I+ +++ID + S GN TL
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRG--------------SGVGGGNDEREQTL 163
Query: 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
+ LL +DG +++ TN D LDPALLRPGR D I
Sbjct: 164 NQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQI 205
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELSSVEG 286
FLK + +G +G LL GPPG GK+ L A+A ++ D +E+ G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 287 NKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN---RVTL 341
+R + + + I+ +++ID + S GN TL
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRG--------------SGVGGGNDEREQTL 163
Query: 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
+ LL +DG +++ TN D LDPALLRPGR D I +
Sbjct: 164 NQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELSSVEG 286
FLK + +G +G LL GPPG GK+ L A+A ++ D +E+ G
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 287 NKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN---RVTL 341
+R + + + I+ +++ID + S GN TL
Sbjct: 94 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRG--------------SGVGGGNDEREQTL 139
Query: 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
+ LL +DG +++ TN D LDPALLRPGR D I +
Sbjct: 140 NQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 22/141 (15%)
Query: 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQIL-IAT 297
+A RG LL+GPPG GK+ L A+A N +++ +S+ EG K +R + +A
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 298 E-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCG 356
E SI+ ++ +D L + R + A+ R+ L+ F DG+ S+
Sbjct: 205 ELQPSIIFIDQVDSLL-CERREGEHDAS------------RRLKTEFLIEF-DGVQSAGD 250
Query: 357 DERIIIFTTNHKDRLDPALLR 377
D +++ TN LD A+LR
Sbjct: 251 DRVLVMGATNRPQELDEAVLR 271
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQIL-IATENK-S 301
G LLYGPPGTGKS L A+A N + + S + E K ++Q+ +A ENK S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 302 ILVVEDIDC 310
I+ ++++D
Sbjct: 122 IIFIDEVDA 130
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQIL-IATENK-S 301
G LLYGPPGTGKS L A+A N + + S + E K ++Q+ +A ENK S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 302 ILVVEDIDCC 311
I+ ++ +D
Sbjct: 146 IIFIDQVDAL 155
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQIL-IATENK-S 301
G LLYGPPGTGKS L A+A N + + S + E K ++Q+ +A ENK S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 302 ILVVEDIDC 310
I+ ++ +D
Sbjct: 113 IIFIDQVDA 121
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQIL-IATENK-S 301
G LLYGPPGTGKS L A+A N + + S + E K ++Q+ +A ENK S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 302 ILVVEDIDC 310
I+ ++ +D
Sbjct: 131 IIFIDQVDA 139
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 249 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELSS---VEGNKDLRQIL-IATENK 300
RG LL+GPPGTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 301 -SILVVEDIDC-CLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358
SI+ +++ID C + ++A I + V + G+ DG+
Sbjct: 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEF--------LVQMQGVGVDNDGI------- 150
Query: 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEH 408
+++ TN LD A+ R R + I++ P + +LG T++
Sbjct: 151 -LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN 197
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQILIAT--ENK 300
+G LL+GPPGTGK+ + +A+ + + SS+ EG K +R + +
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQP 177
Query: 301 SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360
+++ +++ID L + ++ +R + L +DG +S D +
Sbjct: 178 AVIFIDEIDSLLSQRG--------------DGEHESSRRIKTEFLVQLDGATTSSEDRIL 223
Query: 361 IIFTTNHKDRLDPALLR 377
++ TN +D A R
Sbjct: 224 VVGATNRPQEIDEAARR 240
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 249 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELSS---VEGNKDLRQIL-IATENK 300
RG LL+GPPGTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 301 -SILVVEDIDC 310
SI+ +++ID
Sbjct: 228 PSIIFIDEIDS 238
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----------YLNFDVYD 278
+E F +F ++ A ++G LYG G GKS L+AAMA+ L+F +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 279 LELSSVEGNKDLRQILIATENKSILVVEDIDC 310
+++ + N +++ + A +N +L+++DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 245 KAWKRGYLLYGPPGTGKSSLIAAM-----ANYLNFDVYDLELSSVEGNKDLRQILIATE- 298
+A +G LL+GPPG GK+ L A+ A +LN L V + L + L A
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 299 --NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCG 356
SI+ ++++D L S+ ++ +R + L DGL +
Sbjct: 111 HMQPSIIFIDEVDSLLSE--------------RSSSEHEASRRLKTEFLVEFDGLPGNPD 156
Query: 357 DERIIIF-TTNHKDRLDPALLRPGRMDVHIHM 387
+RI++ TN LD A LR V++ +
Sbjct: 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSL 188
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277
L E +KRV + L+ GP G+GKS+ +AAM +YLN Y
Sbjct: 109 LGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 252 LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQ-ILIATEN-----KSILVV 305
+L+GPPGTGK++L +A Y N DV + + G K++R+ I A +N ++IL V
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERIS-AVTSGVKEIREAIERARQNRNAGRRTILFV 112
Query: 306 EDI 308
+++
Sbjct: 113 DEV 115
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 231 ERFLKRKEFYKRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287
ER ++ Y KA K LL+GPPG GK++L +A+ L ++ ++E
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 288 KDLRQILI-ATENKSILVVEDI 308
DL IL + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 231 ERFLKRKEFYKRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287
ER ++ Y KA K LL+GPPG GK++L +A+ L ++ ++E
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 288 KDLRQILI-ATENKSILVVEDI 308
DL IL + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 231 ERFLKRKEFYKRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287
ER ++ Y KA K LL+GPPG GK++L +A+ L ++ ++E
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 288 KDLRQILI-ATENKSILVVEDI 308
DL IL + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 242 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------VYDLELSSVE 285
R GK R L+ G PGTGK+++ MA L D ++ LE+S E
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE 117
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 236 RKEFYKRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284
+K +K GK R +LYGPPG GK++ +A L +D+ + S V
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 276
K R LL GPPGTGK++L A+A L V
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 252 LLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283
L YGPPGTGK+S I A+A + N+ LEL++
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 276
K R LL GPPGTGK++L A+A L V
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278
A KR L GP G GKS++ +A LN + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 252 LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDI 308
LL GPPG GK++L +A+ L +++ + D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 252 LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDI 308
LL GPPG GK++L +A+ L +++ + D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 252 LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDI 308
LL GPPG GK++L +A+ L +++ + D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 252 LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDI 308
LL GPPG GK++L +A+ L +++ + D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 252 LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDI 308
LL GPPG GK++L +A+ L +++ + D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 252 LLYGPPGTGKSSLIAAMANYLN 273
L+ GP G+GKS+ IA+M +Y+N
Sbjct: 140 LVTGPTGSGKSTTIASMIDYIN 161
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 252 LLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDI 308
LL GPPG G+++L +A+ L +++ + D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 252 LLYGPPGTGKSSLIAAMANYL 272
L YGPPGTGK+S I A+ L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 248 KRGYLLYGPPGTGKSSLI-AAMANYLNFDVYDLELS 282
KRG +L GPPG+GK+ ++ A+ N +DV + S
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1083
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 248 KRGYLLYGPPGTGKSSLI-AAMANYLNFDVYDLELS 282
KRG +L GPPG+GK+ ++ A+ N +DV + S
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1302
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 248 KRGYLLYGPPGTGKSSLIAAMANYL 272
KR LL G PGTGKS L AMA L
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 243 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN--KDLRQILIATENK 300
VG+ + G L+ G GKS L+ MA Y DV + L G KD + ++ + +
Sbjct: 154 VGRGQRMG--LFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGR 211
Query: 301 SILVV----EDIDCCLEMQ 315
+ VV D+ L MQ
Sbjct: 212 ARSVVIAAPADVSPLLRMQ 230
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 253 LYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLR 291
L GPPG GK+SL ++A L + L V ++R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,202,760
Number of Sequences: 62578
Number of extensions: 445642
Number of successful extensions: 1463
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1378
Number of HSP's gapped (non-prelim): 70
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)