BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011374
(487 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 209 HPAT---FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLI 265
HP + ++ ++ ++KKMI DD+ FL+ ++Y G ++RGYLLYGPPG+GK+S +
Sbjct: 200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFL 259
Query: 266 AAMANYLNFDVYDLELSSVEGNKD-LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAA 324
A+A L++D+ L L+ D L +L K+++++ED+D + ++R +
Sbjct: 260 YALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEVGFH 319
Query: 325 IPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVH 384
VT SGLLN +DG+ SS DERII TTNH ++LDPAL+RPGR+DV
Sbjct: 320 A------------NVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDVK 365
Query: 385 IHMSYCTPCGFKMLASNYLG 404
++ TP + + + + G
Sbjct: 366 AYLGNATPEQVREMFTRFYG 385
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 150/291 (51%), Gaps = 37/291 (12%)
Query: 167 RTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLD-----HPA---TFDTLAM 218
R ++++++KE++ +K+ G T I+ S+ D HP ++ +
Sbjct: 162 RQVFQNLIEEAKEMALEKE----------EGKTLIYTSMGTDWRRFGHPRRKRPISSVIL 211
Query: 219 DFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278
D ++I+ D+++FL ++Y G ++RGYLLYGPPGTGKSS I A+A L +
Sbjct: 212 DKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICI 271
Query: 279 LELSSVE-GNKDLRQILIATENKSILVVEDIDCCLEM--QDRLAKAKAA-IPDLYR---- 330
L L+ + L Q+L +SI+++EDID ++ D AK+ +A P +
Sbjct: 272 LNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQ 331
Query: 331 --------SACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 382
S + G+ +T SGLLN +DG+ +S G RI+ TTNH ++LD L+RPGR+D
Sbjct: 332 YQGYYGNPSVSSGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVD 389
Query: 383 VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQLM 433
+ I + C+ + + + T+ L + E +E + +PA + M
Sbjct: 390 LQIEIGLCSSYQMEQMFLKFY-PTDFDLAKQFVEKLENYKFSPAQLQAYFM 439
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 15/222 (6%)
Query: 172 HILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPA-TFDTLAMDFDMKKMIMDDL 230
+IL++++EL+ K++ K Y W+ ++ ++ + + I+ D+
Sbjct: 149 NILQEARELALKQQVGKTVM---YNAVGAEWRQFGFPRRRRPLSSVVLEQGISEKIVQDV 205
Query: 231 ERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELSSVEGNKD 289
+ F++ ++Y G ++RGYLLYGPPG GKSS I A+A L + + S +
Sbjct: 206 KGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLSDDR 265
Query: 290 LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID 349
L +L +SI+++ED+D +D L K P Y+ R+T SGLLN +D
Sbjct: 266 LNHLLSVAPQQSIILLEDVDAAFVSRD-LNKQN---PTAYQGM----GRLTFSGLLNALD 317
Query: 350 GLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 391
G+ S+ + RI+ TTNH DRLDPAL+RPGR+DV ++ +CT
Sbjct: 318 GVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 106/180 (58%), Gaps = 10/180 (5%)
Query: 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272
++ ++ + + I+DD++ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LSSVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 273 NFDVYDLELSSVEGNKD-LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331
+ + + LS + D L +L +SI+++ED+D ++ L P Y+
Sbjct: 248 GYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRELLPTEN---PLAYQG 304
Query: 332 ACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 391
R+T SGLLN +DG+ SS + RI+ TTN +RLDPAL+RPGR+D+ ++ +C+
Sbjct: 305 M----GRLTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCS 358
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 111/197 (56%), Gaps = 20/197 (10%)
Query: 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274
++ +D +K+ I+DD+ F+K ++Y G ++RGYLLYGPPG+GK+S I A+A L++
Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286
Query: 275 DVYDLELSSVEGNKD-LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSAC 333
++ L LS D L ++ +SIL++EDID + + +
Sbjct: 287 NICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTGE------------- 333
Query: 334 NQG--NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 391
QG + VT SGLLN +DG+ SS +E I TTNH ++LD A++RPGR+D + + T
Sbjct: 334 -QGFHSSVTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNAT 390
Query: 392 PCGF-KMLASNYLGITE 407
P KM Y G T+
Sbjct: 391 PYQVEKMFMKFYPGETD 407
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272
+++ + + I+ D++ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 273 NFDV-YDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331
+ S + L +L +S++++ED+D +D + L
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKYQGL--- 304
Query: 332 ACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 391
R+T SGLLN +DG+ S+ + RI+ TTNH DRLDPAL+RPGR+D+ ++ YC+
Sbjct: 305 -----GRLTFSGLLNALDGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCS 357
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 11/180 (6%)
Query: 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272
+++ ++ + + I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 273 NFDV-YDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331
+ S + L +L +S++++ED+D +D A+ L
Sbjct: 248 QHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPIKYQGL--- 304
Query: 332 ACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 391
R+T SGLLN +DG+ S+ + RI+ TTNH DRLDPAL+RPGR+D+ ++ +C+
Sbjct: 305 -----GRLTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCS 357
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 143/270 (52%), Gaps = 18/270 (6%)
Query: 170 IPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATFDTLA---MDFDMKKMI 226
I +L+++ LS + K T+ G W+ +P + +L+ + D+K +
Sbjct: 144 INQLLQEAMTLSLNRDIGK--TVIYINGGNGNWER--FGNPRSIRSLSSVILADDLKSKL 199
Query: 227 MDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285
++D++ F+ + +Y+ G ++RGYLLYG PG GKSSLI A+A LN D+ + LSS +
Sbjct: 200 IEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDI 259
Query: 286 GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345
+K + +L KSIL++EDID K+ D + N N +T SGLL
Sbjct: 260 DDKQINHLLNNAPPKSILLIEDIDAAF-------KSHRDNVDSNNNNSNNNNSLTYSGLL 312
Query: 346 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405
N +DG+ S G RI+ TTN + LD AL+R GR+D+ I +S T L +++ +
Sbjct: 313 NALDGVASQEG--RILFMTTNKIELLDSALIREGRIDLKIKVSNATKSQAAQLFTHFYNL 370
Query: 406 -TEHPLFLEVEELIEKVEVTPADVAEQLMR 434
T++ L + E + +++ + + L++
Sbjct: 371 PTDNQLAIRFSENLHDHQLSMSQIQGFLLK 400
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 17/226 (7%)
Query: 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272
D++ + + I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 273 NFDV-YDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331
+ S + L +L +S++++ED+D +D + L
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIKYQGL--- 304
Query: 332 ACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 391
R+T SGLLN +DG+ S+ + RI+ TTN+ DRLDPAL+RPGR+D+ ++ YC+
Sbjct: 305 -----GRLTFSGLLNALDGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCS 357
Query: 392 PCGF-KMLASNYLGITEHPLFLE--VEELIEKV-EVTPADVAEQLM 433
+M Y G + P E E +++ E++PA V M
Sbjct: 358 HWQLTQMFQRFYPG--QAPSLAENFAEHVLKATSEISPAQVQGYFM 401
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 108/231 (46%), Gaps = 22/231 (9%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATFDTLAMDFDMKK 224
+L T LK S ++ + + L + P D+ I + P DM+K
Sbjct: 116 ILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQK 175
Query: 225 M-IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
I + +E L + + YK++G RG LLYGPPGTGK+ L+ A+AN + S
Sbjct: 176 QEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSE 235
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ +++ID +A + D A +
Sbjct: 236 FVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDA-------IATKRF---DAQTGADRE 285
Query: 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 386
R+ L LLN +DG S + +I TN D LDPALLRPGR+D I
Sbjct: 286 VQRILLE-LLNQMDGFEQSSNVK--VIMATNRADTLDPALLRPGRLDRKIE 333
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHP-ATFDTLAMDFDMK 223
+L T +LK S ++ + + L + P D+ I + P T++ + K
Sbjct: 111 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 170
Query: 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
+ I + +E L E YK++G RG LLYGPPGTGK+ L A+AN+ + S
Sbjct: 171 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 230
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ ++++D +A A+ D A +
Sbjct: 231 FVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDA-------IATARF---DAQTGADRE 280
Query: 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
R+ + LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 281 VQRILME-LLNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKI 327
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 22/231 (9%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHP-ATFDTLAMDFDMK 223
+L T +LK S ++ + + L + P D+ I + P +++ + K
Sbjct: 105 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQK 164
Query: 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
+ I + +E L E YK++G RG LLYGPPGTGK+ L A+AN+ + S
Sbjct: 165 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ ++++D +A A+ D A +
Sbjct: 225 FVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDA-------IATARF---DAQTGADRE 274
Query: 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 386
R+ + LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 275 VQRILME-LLNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKIE 322
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 22/213 (10%)
Query: 184 KKTLKLFTLFPYRGDTEIW-QSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKR 242
++++ + + P D+ + V+ ++D + + + I + +E+ LK E +++
Sbjct: 148 QQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEK 207
Query: 243 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQILIA 296
VG +G LLYGPPGTGK+ L A+AN+ + L + EG + +R++
Sbjct: 208 VGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFEL 267
Query: 297 TENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS 354
K SI+ +++ID + R A ++ ++ + TL+ LL +DG
Sbjct: 268 AREKAPSIIFIDEIDAIGARRMRDA-----------TSGDREVQRTLTQLLAEMDGFDPL 316
Query: 355 CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
D+ +I TN KD LDPALLRPGR D HI +
Sbjct: 317 --DDIKVIAATNRKDILDPALLRPGRFDRHIKI 347
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHP-ATFDTLAMDFDMK 223
+L T +LK S + + + L + P D+ I + P T++ + K
Sbjct: 110 ILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 169
Query: 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
+ I + +E L E YK++G RG LLYGPPGTGK+ L A+A++ + S
Sbjct: 170 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSE 229
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ ++++D +A A+ D A +
Sbjct: 230 FVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDA-------IATARF---DAQTGADRE 279
Query: 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
R+ + LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 280 VQRILME-LLNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKI 326
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 22/182 (12%)
Query: 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271
TFD +A + K+ + + +E +L+ + + RVG RG LL GPPGTGK+ L A+A
Sbjct: 174 TFDEVAGQTNAKREVQELVE-YLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 272 LNFDVYDLELSS-VE-----GNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKA 323
+ Y + S +E G +RQ+ IA EN SI+ ++++D + + +
Sbjct: 233 AGVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDS-------VGRTRG 285
Query: 324 AIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDV 383
A Y ++ + TL+ +L +DG + D I++ TN D LDPAL+RPGR D
Sbjct: 286 AG---YGGGHDEREQ-TLNQILAEMDGF--AGHDAVIVLAATNRPDVLDPALMRPGRFDR 339
Query: 384 HI 385
H+
Sbjct: 340 HV 341
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 89/182 (48%), Gaps = 26/182 (14%)
Query: 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 273
D +D + K+ IM+ +FLK +FY+R+G RG +L GPPGTGK+ L A A N
Sbjct: 297 DVAGVD-EAKEEIME-FVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEAN 354
Query: 274 FDVYD------LELSSVEGNKDLRQILIATENKS---ILVVEDIDCCLEMQDRLAKAKAA 324
LE+ G +R L AT K+ I+ +++ID + + R +
Sbjct: 355 VPFLSVSGSEFLEMFVGVGPSRVRD-LFATARKNAPCIIFIDEIDAIGKARGRGGQF--- 410
Query: 325 IPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFT-TNHKDRLDPALLRPGRMDV 383
N TL+ LL +DG SS E I++F TN D LDPALLRPGR D
Sbjct: 411 -------GSNDERESTLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLDPALLRPGRFDR 460
Query: 384 HI 385
I
Sbjct: 461 QI 462
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 18/157 (11%)
Query: 264 LIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENK-SILVVEDIDCCLE-MQDRLAKA 321
+I A++ + ++ L L++++ + +L +L A K +ILV+EDIDC E ++ R +
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 322 KAAIPDLYRSACNQGNRV--------------TLSGLLNFIDGLWSSCGDERIIIFTTNH 367
+ + + N++ TLSG+LN +DG+++S G RI+I TTNH
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNH 118
Query: 368 KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404
+ LDPAL+R GR+D+ I S C + N+ G
Sbjct: 119 SEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYG 155
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHP--ATFDTLAMDFDM 222
+L T +LK S ++ ++ + L + P D+ I + P + D +D
Sbjct: 84 ILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDV-Q 142
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L + + Y+++G RG LLYGPPGTGK+ L+ A+AN + + S
Sbjct: 143 KQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGS 202
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID +A + D A
Sbjct: 203 EFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDA-------IATKRF---DAQTGADR 252
Query: 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 386
+ R+ + LL +DG G +I TN D LDPALLRPGR+D I
Sbjct: 253 EVQRILIE-LLTQMDGF--DQGANVKVIMATNRADTLDPALLRPGRLDRKIE 301
>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
PE=2 SV=1
Length = 418
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 24/231 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID +A + D A
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDA-------IATKRF---DAQTGADR 283
Query: 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
+ R+ L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 284 EVQRILLE-LLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
SV=2
Length = 418
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 24/231 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID +A + D A
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDA-------IATKRF---DAQTGADR 283
Query: 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
+ R+ L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 284 EVQRILLE-LLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
Length = 418
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 24/231 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID +A + D A
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDA-------IATKRF---DAQTGADR 283
Query: 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
+ R+ L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 284 EVQRILLE-LLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 174 LKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPA-TFDTLAMDFDMKKMIMDDLER 232
LKK ++ TL + + P D ++ + + TFD + + + + + +E
Sbjct: 140 LKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIEL 199
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EG 286
LK E ++RVG +G LLYGPPGTGK+ L A+A + + S + E
Sbjct: 200 PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259
Query: 287 NKDLRQILI-ATENKS-ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGL 344
+ +R++ A E++ I+ ++++D R ++ +A ++ R TL L
Sbjct: 260 ARIIREMFAYAKEHEPCIIFMDEVDAI--GGRRFSEGTSADREIQR---------TLMEL 308
Query: 345 LNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 394
L +DG + + G +II+ TN D LDPALLRPGR+D + + G
Sbjct: 309 LTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
PE=1 SV=1
Length = 418
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 24/231 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID +A + D A
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDA-------IATKRF---DAQTGADR 283
Query: 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
+ R+ L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 284 EVQRILLE-LLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
SV=2
Length = 418
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 24/231 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID +A + D A
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDA-------IATKRF---DAQTGADR 283
Query: 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
+ R+ L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 284 EVQRILLE-LLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 22/231 (9%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATFDTLAMDFDMKK 224
+L T +LK S ++ + + L + P D+ I + P DM+K
Sbjct: 122 ILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQK 181
Query: 225 M-IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
I + +E L + + Y+++G RG LLYGPPGTGK+ L+ A+AN + S
Sbjct: 182 QEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN SI+ ++++D +A + D + +
Sbjct: 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS-------IATKRF---DAQTGSDRE 291
Query: 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 386
R+ + LL +DG S + +I TN D LDPALLRPGR+D I
Sbjct: 292 VQRILIE-LLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIE 339
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
+++ + +E LK E ++R+G +G LLYGPPGTGK+ + A+AN ++ +
Sbjct: 192 RLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPE 251
Query: 284 V------EGNKDLRQIL-IATEN-KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
+ E + LR+I A EN SI+ +++ID ++ + +
Sbjct: 252 IMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEV--------------TGE 297
Query: 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGF 395
R ++ LL +DGL + GD I+I TN D +DPAL RPGR D I + G
Sbjct: 298 VERRVVAQLLALMDGL-EARGD-VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGR 355
Query: 396 K 396
K
Sbjct: 356 K 356
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 100/209 (47%), Gaps = 25/209 (11%)
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDL 279
K+ +M+ +E LK E ++ RG LL+GPPGTGK+ L A+AN N V
Sbjct: 464 KQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGP 523
Query: 280 ELSS---VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336
EL S E K +R++ + V+ + D LA + I D + +
Sbjct: 524 ELLSKWVGESEKHVREMFRKARQVAPCVI-----FFDEIDSLAPRRGGIGDSHVT----- 573
Query: 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFK 396
RV +S LL +DGL + ++I TN D +DPALLRPGR++ HI Y P K
Sbjct: 574 ERV-VSQLLTELDGLEEL--KDVVVIAATNRPDMIDPALLRPGRLERHI---YIPPPDKK 627
Query: 397 MLASNY-LGITEHPLF--LEVEELIEKVE 422
+ + + PL + +EEL EK E
Sbjct: 628 ARVEIFKIHLRGKPLADDVNIEELAEKTE 656
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 108/232 (46%), Gaps = 24/232 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPAT--FDTLAMDFDM 222
+L T +LK S ++ K + L + P D+ I + P D MD
Sbjct: 112 ILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMD-TQ 170
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ I + +E L E Y+++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 171 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGS 230
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID +A + D A
Sbjct: 231 EFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDA-------IATKRF---DAQTGADR 280
Query: 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 386
+ R+ L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 281 EVQRILLE-LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKIE 329
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATFDTLAMDFDMKK 224
+L T +LK S ++ ++ + L P D+ I + P+ + D++K
Sbjct: 100 ILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQK 159
Query: 225 MIMDD-LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
M + +E L YK++G RG LLYGPPGTGK+ L A+A++ + + S
Sbjct: 160 QEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSE 219
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ +++ID +A + D A +
Sbjct: 220 FVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDA-------IATKRF---DAQTGADRE 269
Query: 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 385
R+ + LLN +DG S + +I TN +D LDPALLRPGR+D I
Sbjct: 270 VQRILME-LLNQMDGFDVSVNVK--VIMATNRQDTLDPALLRPGRLDRKI 316
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ + + + + P D+ I + P+ D +D
Sbjct: 84 ILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDV-Q 142
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ I + +E L + + Y+++G +G LLYGPPGTGK+ L+ A+AN+ + S
Sbjct: 143 KQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGS 202
Query: 283 SV------EGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + K SI+ ++++D +A + D SA
Sbjct: 203 EFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDS-------IATKRF---DASTSADR 252
Query: 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 386
+ RV + LLN +DG + + +I TN D +DPALLRPGR+D I
Sbjct: 253 EVQRVLIE-LLNQMDGFDPAANVK--VIMATNRADTIDPALLRPGRLDRKIE 301
>sp|O59824|YME1_SCHPO ATP-dependent zinc metalloprotease YME1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC965.04c PE=3 SV=1
Length = 709
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 221 DMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280
D K ++++ FL+ + R+G RG LL GPPGTGK+ L A+A N + +
Sbjct: 273 DEAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMS 332
Query: 281 LSSVE------GNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSA 332
S + G K +R++ A + SI+ ++++D Q R A+ A +
Sbjct: 333 GSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAI--GQKRNARDAAHM------- 383
Query: 333 CNQGNRVTLSGLLNFIDGLWSS--CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 387
R TL+ LL +DG + + I TN + LDPAL RPGR D HIH+
Sbjct: 384 -----RQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHV 435
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAA 267
D TF +A + K+ + +++ FLK E Y +G +G LL GPPGTGK+ L A
Sbjct: 190 DRKVTFKDVAGLAEAKQEV-EEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKA 248
Query: 268 MANYLNFDVYDLELSS-VE-----GNKDLRQILIATENKS--ILVVEDIDCCLEMQDRLA 319
+A N + L S VE G +R + + KS I+ +++ID + + A
Sbjct: 249 VAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKNA 308
Query: 320 KAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPG 379
+ N TL+ LL +DG S+ G II+ TN D LD ALLR G
Sbjct: 309 NMNS----------NDERENTLNQLLTEMDGFGSNSG--VIILAATNRADILDKALLRAG 356
Query: 380 RMDVHIHM 387
R D IH+
Sbjct: 357 RFDRQIHV 364
>sp|D3FFN2|FTSH_MYCGH ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma gallisepticum
(strain R(high / passage 156)) GN=ftsH PE=3 SV=1
Length = 765
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 21/168 (12%)
Query: 229 DLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285
+L +LKR Y ++G RG +LYGPPGTGK+ L A+A + + S+ E
Sbjct: 288 ELVDYLKRPGKYVQMGARTPRGVVLYGPPGTGKTLLAKAVAGEAGVPFFQVTGSAFEDML 347
Query: 286 ---GNKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVT 340
G K +R + + + I+ +++ID + + Y + T
Sbjct: 348 VGVGAKRVRNLFAKAKKAAPCIIFIDEIDSVGSKRGK-----------YEISAGSATDQT 396
Query: 341 LSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
L+ LL +DG + G I++ TN D LD ALLRPGR D HI ++
Sbjct: 397 LNQLLAEMDGFSTRTG--IIVMAATNRLDVLDDALLRPGRFDRHIQVN 442
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 28/189 (14%)
Query: 208 DHPATFDTLAM---DFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSL 264
D P TF+ +A D + ++D FLK E Y+ +G +G LL GPPGTGK+ L
Sbjct: 245 DLPTTFEDVAGIEEAVDEVREVVD----FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLL 300
Query: 265 IAAMANYLNFDVYDLELSS-VE-----GNKDLRQILIATENKS--ILVVEDIDCCLEMQD 316
A+A + L S VE G +R + N++ I+ ++++D
Sbjct: 301 AKAIAGEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDA------ 354
Query: 317 RLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALL 376
L K+++ + TL+ LL +DG S+ G I++ TN + LDPALL
Sbjct: 355 -LGKSRSG----SVVGGHDEREQTLNALLVEMDGFDSNSG--VIVVAATNRPETLDPALL 407
Query: 377 RPGRMDVHI 385
RPGR D H+
Sbjct: 408 RPGRFDRHV 416
>sp|Q8EUA6|FTSH_MYCPE ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma penetrans
(strain HF-2) GN=ftsH PE=3 SV=1
Length = 822
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE------G 286
+LKR + Y +G +G +LYGPPGTGK+ L A+A + + S+ E G
Sbjct: 325 YLKRPDRYAAMGARVPKGVILYGPPGTGKTLLAKAVAGEAKVPFFQVSGSAFEDMLVGVG 384
Query: 287 NKDLRQIL--IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGL 344
K +R + +I+ +++ID + + ++ D TL+ L
Sbjct: 385 AKRVRDLFNKAVKSAPAIIFIDEIDSVGSKRGKFETTAGSLADQ-----------TLNQL 433
Query: 345 LNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
L +DG + G I++ TN D LD ALLRPGR D HI ++
Sbjct: 434 LAEMDGFNTKTG--VIVMAATNRLDVLDDALLRPGRFDRHIQVN 475
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 21/183 (11%)
Query: 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270
+T+D + K I + +E +K E ++ +G A +G +LYGPPGTGK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 271 YLN---FDVYDLELSS---VEGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAK 322
+ + V EL EG++ +R++ + SI+ +++ID R+ +
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI--GSTRVEGSG 262
Query: 323 AAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 382
++ R T+ LLN +DG +S + II TN D LDPALLRPGR+D
Sbjct: 263 GGDSEVQR---------TMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRID 311
Query: 383 VHI 385
I
Sbjct: 312 RKI 314
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271
TF +A D K + ++ FLK + Y+R+G +G LL G PGTGK+ L A+A
Sbjct: 238 TFADVA-GIDEAKEELSEIVSFLKDPQRYQRLGGKIPKGVLLVGAPGTGKTLLAKAVAGE 296
Query: 272 LNFDVYDLELSS-VE-----GNKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKA 323
+ + S VE G +R + E K+ I+ ++++D L K +A
Sbjct: 297 AGVPFFSMSGSDFVEMFVGVGAARVRDLFKQAETKAPCIIFIDELDA-------LGKTRA 349
Query: 324 AIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDV 383
L N+ TL+ LL +DG S+ G II+ TN + LDPALLRPGR D
Sbjct: 350 ----LNAVGGNEEREQTLNQLLVEMDGFDSNKG--VIIMAATNRPEILDPALLRPGRFDR 403
Query: 384 HIHM 387
H+ +
Sbjct: 404 HVAL 407
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR---VTLS 342
K +R + + KS I+ +++ID A+ + G+R TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 343 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 20/183 (10%)
Query: 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270
AT++ + + K I + +E +K E ++ +G A +G ++YGPPGTGK+ L A+A+
Sbjct: 153 ATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAH 212
Query: 271 YLNFDVYDLELSSV------EGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAK 322
+ + + S + EG+K +R++ + SI+ +++ID + K
Sbjct: 213 HTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKG- 271
Query: 323 AAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 382
++ R T+ LLN +DG S+ + II TN D LDPALLRPGR+D
Sbjct: 272 GGDSEVQR---------TMLELLNQLDGFESTQNIK--IIMATNRIDILDPALLRPGRID 320
Query: 383 VHI 385
I
Sbjct: 321 RKI 323
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR---VTLS 342
K +R + + KS I+ +++ID A+ + G+R TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 343 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR---VTLS 342
K +R + + KS I+ +++ID A+ + G+R TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 343 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 31/264 (11%)
Query: 171 PHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPA-TFDTLAMDFDMKKMIMDD 229
P +LK + +++L + + P D +I+ ++ P T++ + + I +
Sbjct: 109 PDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREA 168
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS--- 283
+E L + + +++VG + +G LLYGPPGTGK+ L A+A+ N V EL
Sbjct: 169 VELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYI 228
Query: 284 VEGNKDLRQI--LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR--- 338
EG + +R++ L SI+ +++ID AI + G+R
Sbjct: 229 GEGARLVRELFDLAKQRAPSIIFIDEID--------------AIGAHRNDSTTSGDREVQ 274
Query: 339 VTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG---F 395
TL LL +DG + + GD +I+ TN D LD ALLRPGR D I + G
Sbjct: 275 RTLMQLLAEMDG-FDNRGDVKIVA-ATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAI 332
Query: 396 KMLASNYLGITEHPLFLEVEELIE 419
+ + Y+ I E EV L E
Sbjct: 333 LKIHTQYMNIGEDVNLSEVSRLTE 356
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR---VTLS 342
K +R + + KS I+ +++ID A+ + G+R TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 343 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|Q8NB90|SPAT5_HUMAN Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1
SV=3
Length = 893
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271
T+D + K I + +E LK+ E +K G RG LLYGPPGTGK+ + A+AN
Sbjct: 351 TYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVANE 410
Query: 272 LNFDVYDLELSSV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKA 323
+ V + + E LRQI + SI+ ++++D ++
Sbjct: 411 VGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDALCPKRE------- 463
Query: 324 AIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIF-TTNHKDRLDPALLRPGRMD 382
A N+ + ++ LL +DG+ S + ++++ TN LD AL RPGR D
Sbjct: 464 -------GAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFD 516
Query: 383 VHIHMS 388
I +
Sbjct: 517 KEIEIG 522
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 30/206 (14%)
Query: 200 EIWQSVNLDHPATFDTLAMDF------------DMKKMIMDDLERFLKRKEFYKRVGKAW 247
+ Q++N P+ +A+D +K + +E LK E + R+G
Sbjct: 601 DFLQAMNDIRPSAMREIAIDVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESFIRMGIQP 660
Query: 248 KRGYLLYGPPGTGKSSLIAAMAN--YLNF-DVYDLELSS---VEGNKDLRQILIATENKS 301
+G LLYGPPG K+ + A+AN LNF + EL + E + +R+ T K+
Sbjct: 661 PKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVRE----TFRKA 716
Query: 302 ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361
V I E+ D LA + + A N +RV L+ LL +DG+ + I
Sbjct: 717 RAVAPSIIFFDEL-DALAVERGS----SLGAGNVADRV-LAQLLTEMDGIEQL--KDVTI 768
Query: 362 IFTTNHKDRLDPALLRPGRMDVHIHM 387
+ TN DR+D AL+RPGR+D I++
Sbjct: 769 LAATNRPDRIDKALMRPGRIDRIIYV 794
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR---VTLS 342
K +R + + KS I+ +++ID A+ + G+R TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 343 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
LL +DG + S GD +II TN D LDPA+LRPGR D I ++
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIA 317
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 24/199 (12%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284
+E L R E + VG G LLYGPPGTGK+ L A+AN N + S +
Sbjct: 166 VEMPLDRPEMFAEVGIDPPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFI 225
Query: 285 -EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341
EG K +R + +A EN+ +++ +++ID R + ++ R T+
Sbjct: 226 GEGAKLVRDLFEVARENEPAVIFIDEIDAI--ASKRTDSKTSGDAEVQR---------TM 274
Query: 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKM---L 398
LL +DG + G+ RII TN D LDPA+LRPGR D I + G ++ +
Sbjct: 275 MQLLAEMDG-FDERGNIRIIA-ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQI 332
Query: 399 ASNYLGITEHPLFLEVEEL 417
+ + +++ F+E+ E+
Sbjct: 333 HTRKMNVSDDVDFVELAEM 351
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 21/159 (13%)
Query: 238 EFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLR 291
E +KRVG +G LL+GPPGTGK+ L A+A+ L+ + + S++ E + +R
Sbjct: 174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIR 233
Query: 292 QILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID 349
++ + I+ +++ID R ++ +A ++ R TL LLN +D
Sbjct: 234 EMFNYARDHQPCIVFMDEIDAI--GGRRFSEGTSADREIQR---------TLMELLNQLD 282
Query: 350 GLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 388
G + S G ++I+ TN D LDPALLRPGR+D I +
Sbjct: 283 G-FDSLGKVKVIM-ATNRPDTLDPALLRPGRLDRKIEIG 319
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 23/167 (13%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284
+E L E ++RVG +G LLYGPPGTGK+ L A+A+ L+ + + SS+
Sbjct: 149 IELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYI 208
Query: 285 -EGNKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341
E + +R++ + I+ +++ID R ++ +A ++ R TL
Sbjct: 209 GESARLIREMFNYARDHQPCIIFMDEIDAI--GGRRFSEGTSADREIQR---------TL 257
Query: 342 SGLLNFIDGLWSSCGDERI-IIFTTNHKDRLDPALLRPGRMDVHIHM 387
LLN +DG + R+ +I TN D LDPALLRPGR+D IH+
Sbjct: 258 MELLNQMDGFDTL---HRVKMIMATNRPDTLDPALLRPGRLDRKIHI 301
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 23/167 (13%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284
+E L E ++RVG +G LLYGPPGTGK+ L A+A+ L+ + + SS+
Sbjct: 149 IELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYI 208
Query: 285 -EGNKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341
E + +R++ + I+ +++ID R ++ +A ++ R TL
Sbjct: 209 GESARLIREMFNYARDHQPCIIFMDEIDAI--GGRRFSEGTSADREIQR---------TL 257
Query: 342 SGLLNFIDGLWSSCGDERI-IIFTTNHKDRLDPALLRPGRMDVHIHM 387
LLN +DG + R+ +I TN D LDPALLRPGR+D IH+
Sbjct: 258 MELLNQMDGFDTL---HRVKMIMATNRPDTLDPALLRPGRLDRKIHI 301
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 23/167 (13%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284
+E L E ++RVG +G LLYGPPGTGK+ L A+A+ L+ + + SS+
Sbjct: 149 IELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYI 208
Query: 285 -EGNKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341
E + +R++ + I+ +++ID R ++ +A ++ R TL
Sbjct: 209 GESARLIREMFNYARDHQPCIIFMDEIDAI--GGRRFSEGTSADREIQR---------TL 257
Query: 342 SGLLNFIDGLWSSCGDERI-IIFTTNHKDRLDPALLRPGRMDVHIHM 387
LLN +DG + R+ +I TN D LDPALLRPGR+D IH+
Sbjct: 258 MELLNQMDGFDTL---HRVKMIMATNRPDTLDPALLRPGRLDRKIHI 301
>sp|Q3UMC0|SPAT5_MOUSE Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2
SV=2
Length = 893
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271
T+D + K I + +E LK+ E +K G RG LLYGPPGTGK+ + A+AN
Sbjct: 351 TYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410
Query: 272 LNFDVYDLELSSV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKA 323
+ V + + E LRQI + SI+ ++++D ++
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKRE------- 463
Query: 324 AIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIF-TTNHKDRLDPALLRPGRMD 382
A ++ + ++ LL +DG+ S + R+++ TN LD AL RPGR D
Sbjct: 464 -------GAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFD 516
Query: 383 VHIHMS 388
I +
Sbjct: 517 KEIEIG 522
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 30/206 (14%)
Query: 200 EIWQSVNLDHPATFDTLAMDF------------DMKKMIMDDLERFLKRKEFYKRVGKAW 247
+ Q +N P+ +A+D ++K + +E LK + + R+G
Sbjct: 601 DFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQP 660
Query: 248 KRGYLLYGPPGTGKSSLIAAMAN--YLNF-DVYDLELSS---VEGNKDLRQILIATENKS 301
+G LLYGPPG K+ + A+AN LNF + EL + E + +R+I K+
Sbjct: 661 PKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIF----RKA 716
Query: 302 ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361
V I E+ D LA + + A N +RV L+ LL +DG+ +
Sbjct: 717 RAVAPSIIFFDEL-DALAVERGS----SSGAGNVADRV-LAQLLTEMDGIEQL--KNVTV 768
Query: 362 IFTTNHKDRLDPALLRPGRMDVHIHM 387
+ TN DR+D AL+RPGR+D I++
Sbjct: 769 LAATNRPDRIDKALMRPGRIDRIIYV 794
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,049,392
Number of Sequences: 539616
Number of extensions: 7364912
Number of successful extensions: 32733
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 30764
Number of HSP's gapped (non-prelim): 1749
length of query: 487
length of database: 191,569,459
effective HSP length: 121
effective length of query: 366
effective length of database: 126,275,923
effective search space: 46216987818
effective search space used: 46216987818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)